Query 007138
Match_columns 616
No_of_seqs 228 out of 2850
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.7E-39 1.3E-43 360.8 24.4 372 202-606 318-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.5E-36 2.6E-40 334.0 33.3 438 16-503 95-548 (768)
3 3vq2_A TLR4, TOLL-like recepto 100.0 8E-32 2.7E-36 294.6 36.8 481 20-584 31-557 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-31 1.4E-35 292.9 38.4 523 21-584 25-621 (680)
5 3t6q_A CD180 antigen; protein- 100.0 2.1E-31 7.1E-36 291.3 34.7 484 21-584 33-559 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.3E-30 4.4E-35 285.0 35.3 464 15-561 51-559 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-31 1.9E-35 287.9 27.4 462 16-564 51-560 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-29 5.7E-34 280.0 35.8 212 328-565 404-625 (680)
9 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-28 2E-32 273.0 43.1 510 18-613 21-559 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-28 6E-33 264.9 32.0 371 20-452 25-424 (549)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2.9E-28 9.8E-33 263.2 29.5 458 49-583 25-508 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 2.1E-27 7.1E-32 257.8 36.1 476 20-583 27-529 (570)
13 4ecn_A Leucine-rich repeat pro 100.0 1.3E-27 4.6E-32 265.5 29.0 378 21-474 323-785 (876)
14 4eco_A Uncharacterized protein 100.0 3.8E-28 1.3E-32 265.5 23.9 346 194-585 202-600 (636)
15 2z63_A TOLL-like receptor 4, v 100.0 1.4E-27 4.7E-32 259.2 27.1 477 49-615 27-532 (570)
16 4eco_A Uncharacterized protein 100.0 6E-28 2E-32 263.9 23.0 370 161-586 198-633 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-27 5.3E-32 255.6 25.5 447 53-583 3-479 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 1E-26 3.5E-31 262.8 33.0 479 49-615 23-540 (844)
19 4ecn_A Leucine-rich repeat pro 100.0 5.7E-27 1.9E-31 260.5 29.7 276 161-476 440-764 (876)
20 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-26 5.7E-31 247.6 25.5 448 24-560 3-479 (520)
21 4g8a_A TOLL-like receptor 4; l 99.9 1E-23 3.5E-28 231.8 38.6 479 22-583 53-578 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 9.3E-26 3.2E-30 243.8 21.6 457 49-583 30-508 (562)
23 1jl5_A Outer protein YOPM; leu 99.9 1.4E-25 4.8E-30 234.4 21.8 416 19-583 9-427 (454)
24 1o6v_A Internalin A; bacterial 99.9 4.5E-24 1.5E-28 225.0 28.7 348 140-567 45-392 (466)
25 1o6v_A Internalin A; bacterial 99.9 4.1E-24 1.4E-28 225.3 28.4 345 166-584 43-387 (466)
26 3v47_A TOLL-like receptor 5B a 99.9 4.8E-24 1.6E-28 224.5 27.7 158 66-260 24-191 (455)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-23 7.8E-28 225.1 29.8 455 19-560 29-508 (562)
28 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.8E-28 220.3 24.5 227 165-475 123-349 (457)
29 3v47_A TOLL-like receptor 5B a 99.9 2.1E-23 7.1E-28 219.6 25.1 361 169-583 30-406 (455)
30 4fmz_A Internalin; leucine ric 99.9 4.2E-23 1.4E-27 209.0 26.0 304 166-583 41-344 (347)
31 1jl5_A Outer protein YOPM; leu 99.9 5.1E-23 1.7E-27 215.0 25.1 330 16-452 29-371 (454)
32 4fmz_A Internalin; leucine ric 99.9 1.7E-22 5.9E-27 204.5 26.2 302 138-558 41-342 (347)
33 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-22 7.1E-27 221.3 28.7 225 365-614 349-580 (635)
34 3o6n_A APL1; leucine-rich repe 99.9 1.5E-21 5E-26 200.9 27.8 265 139-452 43-309 (390)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.1E-21 7.3E-26 202.9 27.4 319 164-567 37-356 (457)
36 3o6n_A APL1; leucine-rich repe 99.9 3.2E-21 1.1E-25 198.4 26.6 306 167-583 43-350 (390)
37 3ogk_B Coronatine-insensitive 99.9 1.5E-22 5E-27 220.6 17.2 134 163-306 186-326 (592)
38 2id5_A Lingo-1, leucine rich r 99.9 4.7E-21 1.6E-25 202.8 26.3 179 365-560 152-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 9.3E-21 3.2E-25 205.8 27.6 305 139-503 49-355 (597)
40 3oja_B Anopheles plasmodium-re 99.9 1.8E-20 6.1E-25 203.6 26.3 107 167-285 49-157 (597)
41 2id5_A Lingo-1, leucine rich r 99.9 6.2E-20 2.1E-24 194.2 27.2 294 141-503 32-330 (477)
42 3ogk_B Coronatine-insensitive 99.9 3.9E-22 1.3E-26 217.3 8.2 398 139-582 110-548 (592)
43 2p1m_B Transport inhibitor res 99.8 4.5E-22 1.5E-26 216.9 5.1 212 17-260 62-300 (594)
44 2p1m_B Transport inhibitor res 99.8 1.4E-21 4.7E-26 213.0 8.1 381 18-449 102-518 (594)
45 1xku_A Decorin; proteoglycan, 99.8 1.3E-18 4.4E-23 174.6 25.8 199 365-611 121-329 (330)
46 1xku_A Decorin; proteoglycan, 99.8 7.6E-19 2.6E-23 176.2 24.0 223 202-455 52-280 (330)
47 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-21 4.5E-26 206.2 0.5 55 50-105 3-68 (461)
48 2ft3_A Biglycan; proteoglycan, 99.8 5.7E-19 2E-23 177.3 18.4 221 202-453 54-279 (332)
49 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-19 4.8E-24 179.8 13.2 252 299-585 51-304 (313)
50 4fcg_A Uncharacterized protein 99.8 7.3E-19 2.5E-23 175.7 18.2 230 202-475 81-311 (328)
51 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-20 5.2E-25 198.1 5.3 386 141-582 3-437 (461)
52 2ft3_A Biglycan; proteoglycan, 99.8 1.4E-17 4.7E-22 167.2 22.4 289 202-559 33-330 (332)
53 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-17 1.5E-21 175.4 27.1 254 202-558 40-293 (622)
54 4fcg_A Uncharacterized protein 99.8 3.6E-18 1.2E-22 170.6 17.3 173 365-580 127-309 (328)
55 1ogq_A PGIP-2, polygalacturona 99.8 1.7E-18 5.9E-23 171.9 13.0 57 366-423 175-231 (313)
56 3o53_A Protein LRIM1, AGAP0063 99.7 1.5E-18 5.2E-23 172.8 9.2 159 365-567 120-280 (317)
57 2z80_A TOLL-like receptor 2, v 99.7 4.8E-17 1.6E-21 164.7 15.2 79 202-284 52-133 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.7 8.5E-18 2.9E-22 167.4 8.6 261 146-476 12-273 (317)
59 3oja_A Leucine-rich immune mol 99.7 5.3E-17 1.8E-21 171.2 14.3 182 194-455 26-208 (487)
60 3zyj_A Leucine-rich repeat-con 99.7 6.3E-16 2.2E-20 161.3 22.3 198 365-583 88-290 (440)
61 3zyi_A Leucine-rich repeat-con 99.7 5.5E-16 1.9E-20 162.4 21.7 198 365-583 99-301 (452)
62 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-15 5.9E-20 163.0 25.3 131 141-308 61-191 (622)
63 2z80_A TOLL-like receptor 2, v 99.7 1E-15 3.5E-20 154.9 20.3 253 141-455 52-318 (353)
64 3zyi_A Leucine-rich repeat-con 99.7 1.9E-15 6.6E-20 158.3 22.5 220 202-447 75-300 (452)
65 2z66_A Variable lymphocyte rec 99.7 1.1E-15 3.7E-20 151.5 18.7 200 365-583 52-259 (306)
66 1ozn_A Reticulon 4 receptor; N 99.7 5.6E-16 1.9E-20 151.8 16.2 201 365-583 32-236 (285)
67 3zyj_A Leucine-rich repeat-con 99.7 4E-15 1.4E-19 155.3 20.8 224 365-613 64-291 (440)
68 2z66_A Variable lymphocyte rec 99.7 2.8E-15 9.6E-20 148.4 18.6 53 229-285 10-62 (306)
69 2xwt_C Thyrotropin receptor; s 99.6 4.1E-15 1.4E-19 141.5 16.4 177 365-585 55-239 (239)
70 3oja_A Leucine-rich immune mol 99.6 2.3E-15 7.8E-20 158.6 15.2 190 365-584 58-249 (487)
71 1p9a_G Platelet glycoprotein I 99.6 1.4E-14 4.9E-19 141.7 19.2 173 365-582 31-205 (290)
72 1wwl_A Monocyte differentiatio 99.6 6E-16 2.1E-20 153.6 7.1 82 490-583 225-307 (312)
73 2xwt_C Thyrotropin receptor; s 99.6 1.5E-14 5.3E-19 137.5 16.1 85 365-452 105-194 (239)
74 1ozn_A Reticulon 4 receptor; N 99.6 8.3E-14 2.8E-18 136.3 21.2 82 365-447 153-235 (285)
75 2z62_A TOLL-like receptor 4, v 99.6 7.8E-15 2.7E-19 142.9 13.4 199 365-581 28-233 (276)
76 4ay9_X Follicle-stimulating ho 99.6 4.2E-14 1.4E-18 142.7 18.6 150 365-558 104-255 (350)
77 2o6q_A Variable lymphocyte rec 99.6 7.7E-14 2.6E-18 135.2 19.6 175 365-583 37-216 (270)
78 1wwl_A Monocyte differentiatio 99.6 1.5E-14 5.1E-19 143.5 12.3 207 328-563 94-309 (312)
79 2ast_B S-phase kinase-associat 99.5 4.5E-15 1.5E-19 149.1 7.7 200 202-423 47-257 (336)
80 1h6u_A Internalin H; cell adhe 99.5 5.7E-14 1.9E-18 138.9 14.9 195 328-567 40-234 (308)
81 4ay9_X Follicle-stimulating ho 99.5 2.2E-13 7.4E-18 137.4 19.3 223 202-475 30-256 (350)
82 2ast_B S-phase kinase-associat 99.5 9.9E-15 3.4E-19 146.6 8.5 206 365-588 93-308 (336)
83 1h6u_A Internalin H; cell adhe 99.5 2.9E-13 1E-17 133.7 18.2 56 202-260 63-118 (308)
84 4glp_A Monocyte differentiatio 99.5 6.1E-14 2.1E-18 139.0 12.5 84 490-583 221-305 (310)
85 2z62_A TOLL-like receptor 4, v 99.5 2.7E-13 9.1E-18 132.0 16.2 176 365-559 52-234 (276)
86 1p9a_G Platelet glycoprotein I 99.5 9.8E-13 3.4E-17 128.6 19.7 193 202-447 10-205 (290)
87 2o6q_A Variable lymphocyte rec 99.5 8.9E-13 3E-17 127.7 19.1 151 365-559 61-215 (270)
88 2ca6_A RAN GTPase-activating p 99.5 1.1E-14 3.6E-19 149.3 4.4 94 161-260 24-133 (386)
89 4glp_A Monocyte differentiatio 99.5 1.3E-13 4.4E-18 136.6 12.0 181 365-564 117-308 (310)
90 3rfs_A Internalin B, repeat mo 99.5 6.8E-13 2.3E-17 128.7 14.4 135 365-548 109-245 (272)
91 2ca6_A RAN GTPase-activating p 99.5 1.3E-14 4.5E-19 148.6 2.4 247 296-564 30-317 (386)
92 3rfs_A Internalin B, repeat mo 99.5 5.2E-13 1.8E-17 129.5 13.5 200 202-456 41-240 (272)
93 3m19_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 124.6 16.3 61 489-558 127-188 (251)
94 3m19_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 121.7 16.9 84 490-583 104-190 (251)
95 3cvr_A Invasion plasmid antige 99.3 1.4E-11 4.9E-16 130.8 16.8 187 202-460 59-252 (571)
96 1h6t_A Internalin B; cell adhe 99.3 7.9E-12 2.7E-16 122.3 13.7 172 365-567 46-217 (291)
97 3goz_A Leucine-rich repeat-con 99.3 6.8E-13 2.3E-17 134.5 6.1 252 161-453 14-299 (362)
98 4ezg_A Putative uncharacterize 99.3 1.5E-11 5.1E-16 112.9 13.7 147 365-558 44-190 (197)
99 1h6t_A Internalin B; cell adhe 99.3 2.8E-11 9.5E-16 118.4 15.8 76 202-284 46-121 (291)
100 3goz_A Leucine-rich repeat-con 99.3 6.7E-13 2.3E-17 134.5 3.0 236 328-583 21-295 (362)
101 4ezg_A Putative uncharacterize 99.3 9.6E-12 3.3E-16 114.1 9.8 59 202-260 112-170 (197)
102 3cvr_A Invasion plasmid antige 99.3 3E-11 1E-15 128.3 13.5 185 329-563 59-243 (571)
103 1m9s_A Internalin B; cell inva 99.2 3.2E-11 1.1E-15 129.6 13.4 172 365-567 43-214 (605)
104 1m9s_A Internalin B; cell inva 99.2 6.2E-11 2.1E-15 127.4 14.3 125 165-308 39-163 (605)
105 1xeu_A Internalin C; cellular 99.2 2.5E-11 8.4E-16 116.8 9.2 170 365-566 19-188 (263)
106 3e6j_A Variable lymphocyte rec 99.2 1.6E-10 5.5E-15 108.6 14.7 147 366-558 20-168 (229)
107 2o6s_A Variable lymphocyte rec 99.2 1.1E-10 3.8E-15 108.0 12.0 129 365-503 28-158 (208)
108 1xeu_A Internalin C; cellular 99.2 3.2E-11 1.1E-15 116.0 8.1 148 365-542 41-188 (263)
109 3e6j_A Variable lymphocyte rec 99.2 2.1E-10 7.3E-15 107.8 13.3 57 524-582 111-169 (229)
110 2v9t_B SLIT homolog 2 protein 99.2 3.6E-10 1.2E-14 105.4 14.3 61 489-558 100-161 (220)
111 2xot_A Amphoterin-induced prot 99.1 2.8E-10 9.7E-15 115.0 13.6 106 365-475 39-146 (361)
112 2xot_A Amphoterin-induced prot 99.1 1.5E-10 5E-15 117.1 11.3 99 368-475 21-122 (361)
113 2v9t_B SLIT homolog 2 protein 99.1 5.1E-10 1.8E-14 104.4 13.5 131 365-536 32-163 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.1 5.5E-10 1.9E-14 104.2 12.2 146 392-583 14-164 (220)
115 2ell_A Acidic leucine-rich nuc 99.1 3.8E-10 1.3E-14 100.5 10.6 138 387-567 22-164 (168)
116 2v70_A SLIT-2, SLIT homolog 2 99.0 2.3E-09 8E-14 99.9 14.1 89 365-455 57-146 (220)
117 2o6s_A Variable lymphocyte rec 99.0 3.1E-09 1.1E-13 98.2 14.3 147 368-559 10-158 (208)
118 2je0_A Acidic leucine-rich nuc 99.0 7E-10 2.4E-14 96.5 8.1 125 389-557 17-148 (149)
119 1dce_A Protein (RAB geranylger 99.0 2E-11 6.8E-16 130.4 -3.3 185 365-578 349-566 (567)
120 3sb4_A Hypothetical leucine ri 99.0 1.1E-08 3.7E-13 101.9 16.5 32 523-555 295-327 (329)
121 2ell_A Acidic leucine-rich nuc 98.9 3.3E-09 1.1E-13 94.3 9.4 23 488-512 142-164 (168)
122 2je0_A Acidic leucine-rich nuc 98.9 3E-09 1E-13 92.5 8.0 13 489-501 136-148 (149)
123 1a9n_A U2A', U2A'; complex (nu 98.9 4.5E-09 1.5E-13 94.2 8.3 57 387-446 17-73 (176)
124 3sb4_A Hypothetical leucine ri 98.8 1.5E-08 5E-13 101.0 11.9 301 54-444 6-328 (329)
125 2wfh_A SLIT homolog 2 protein 98.8 3.1E-08 1.1E-12 90.1 12.3 62 488-558 73-135 (193)
126 1a9n_A U2A', U2A'; complex (nu 98.8 4.1E-09 1.4E-13 94.5 6.3 133 409-586 15-154 (176)
127 1w8a_A SLIT protein; signaling 98.8 2.7E-08 9.1E-13 90.5 11.1 79 368-452 11-92 (192)
128 2o6r_A Variable lymphocyte rec 98.8 4.5E-08 1.5E-12 87.7 12.3 60 490-558 73-133 (177)
129 4b8c_D Glucose-repressible alc 98.7 7.5E-09 2.6E-13 114.1 6.0 90 365-458 247-336 (727)
130 1w8a_A SLIT protein; signaling 98.7 7E-08 2.4E-12 87.7 11.0 106 365-475 29-136 (192)
131 4b8c_D Glucose-repressible alc 98.7 1.1E-08 3.8E-13 112.8 6.1 152 406-582 217-369 (727)
132 4fdw_A Leucine rich hypothetic 98.7 1.2E-06 4.2E-11 89.1 20.8 209 365-600 180-394 (401)
133 2wfh_A SLIT homolog 2 protein 98.7 1.4E-07 4.7E-12 85.7 11.9 86 365-453 31-117 (193)
134 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5.3E-11 88.4 18.8 236 330-611 136-380 (401)
135 2o6r_A Variable lymphocyte rec 98.6 3.4E-07 1.2E-11 81.9 12.0 85 365-452 28-114 (177)
136 1ds9_A Outer arm dynein; leuci 98.6 7.4E-10 2.5E-14 101.5 -6.2 83 366-452 24-107 (198)
137 1dce_A Protein (RAB geranylger 98.5 2.5E-07 8.7E-12 98.7 10.0 84 365-453 463-548 (567)
138 3g39_A Variable lymphocyte rec 98.5 4.7E-07 1.6E-11 80.3 9.8 100 415-558 11-111 (170)
139 2r9u_A Variable lymphocyte rec 98.5 5.4E-07 1.8E-11 80.2 10.1 99 416-558 15-114 (174)
140 1ds9_A Outer arm dynein; leuci 98.5 1.2E-09 4.1E-14 100.1 -7.7 60 390-452 24-84 (198)
141 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.9E-10 82.1 19.8 60 488-558 315-375 (394)
142 3g39_A Variable lymphocyte rec 98.3 1.5E-06 5.2E-11 77.0 8.8 63 389-453 30-93 (170)
143 2r9u_A Variable lymphocyte rec 98.3 1.8E-06 6E-11 76.9 8.9 63 389-453 33-96 (174)
144 3un9_A NLR family member X1; l 98.3 1.1E-07 3.8E-12 95.9 -0.0 137 365-503 72-221 (372)
145 4fs7_A Uncharacterized protein 98.2 4.2E-05 1.4E-09 77.8 18.6 81 488-581 292-375 (394)
146 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.6E-11 76.4 6.2 91 141-242 61-155 (176)
147 3un9_A NLR family member X1; l 98.2 1.6E-07 5.3E-12 94.8 -0.9 168 389-564 72-253 (372)
148 2ra8_A Uncharacterized protein 98.2 2.9E-06 9.8E-11 84.8 7.6 54 365-421 172-227 (362)
149 2ra8_A Uncharacterized protein 98.1 8.6E-06 2.9E-10 81.3 10.2 84 17-102 135-228 (362)
150 4gt6_A Cell surface protein; l 98.1 0.00074 2.5E-08 68.5 24.5 83 385-476 284-368 (394)
151 3e4g_A ATP synthase subunit S, 98.1 3E-06 1E-10 74.2 5.0 40 142-184 115-154 (176)
152 2ifg_A High affinity nerve gro 98.0 1.7E-05 5.7E-10 79.3 9.4 104 393-539 12-116 (347)
153 4gt6_A Cell surface protein; l 97.9 0.0015 5.3E-08 66.2 23.0 15 163-177 81-95 (394)
154 2ifg_A High affinity nerve gro 97.7 8.9E-05 3E-09 74.0 9.8 87 365-453 31-118 (347)
155 4h09_A Hypothetical leucine ri 97.5 0.019 6.4E-07 57.7 23.2 69 488-568 281-350 (379)
156 4h09_A Hypothetical leucine ri 97.5 0.037 1.3E-06 55.5 25.1 44 488-542 305-348 (379)
157 1io0_A Tropomodulin; LRR prote 97.3 0.00022 7.7E-09 63.8 5.8 13 91-103 34-46 (185)
158 1io0_A Tropomodulin; LRR prote 97.3 8.2E-05 2.8E-09 66.7 2.9 40 384-423 31-75 (185)
159 3rw6_A Nuclear RNA export fact 96.4 0.0025 8.5E-08 60.1 4.7 62 201-263 169-234 (267)
160 3rw6_A Nuclear RNA export fact 95.1 0.011 3.6E-07 55.8 3.1 83 387-472 168-258 (267)
161 3rfe_A Platelet glycoprotein I 91.7 0.21 7.1E-06 41.1 5.0 36 524-560 30-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 90.6 0.13 4.5E-06 45.6 2.8 93 409-502 37-135 (197)
163 3rfe_A Platelet glycoprotein I 89.5 0.43 1.5E-05 39.2 5.0 51 529-583 12-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 87.8 0.95 3.3E-05 40.1 6.3 95 160-259 32-136 (197)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-39 Score=360.79 Aligned_cols=372 Identities=20% Similarity=0.146 Sum_probs=202.9
Q ss_pred CCCcEEEccCCCCCcccccc-cCCCCCccEEEEcCCCCCCCCCC-CCCCC-CCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQS-SLSLSSLREIEICKCSSLVSFPE-VALPS-KLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|++|++++|...+.+|.. ++.+++|++|++++|.....+|. +..++ +|++|++++|.....++..+....+++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 55555555555443344443 45555555555555532223332 12232 55555555554322333322112234555
Q ss_pred EEEeccCCCCccccc-cCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccc
Q 007138 279 ILSIHGCRSLTYIAA-VQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 357 (616)
+|++++|.....++. ...+++|+.|++++|.-...+ +..+.. +++|++|+++++. +. +.+|..+..
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~-----l~~L~~L~L~~n~-l~-----~~~p~~~~~ 464 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI--PSSLGS-----LSKLRDLKLWLNM-LE-----GEIPQELMY 464 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC--CGGGGG-----CTTCCEEECCSSC-CC-----SCCCGGGGG
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc--cHHHhc-----CCCCCEEECCCCc-cc-----CcCCHHHcC
Confidence 665555432212221 134455666666555221122 333333 5566666666532 22 122333333
Q ss_pred cccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCC
Q 007138 358 LEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437 (616)
Q Consensus 358 l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 437 (616)
+ ++|++|++++|...+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|.....++
T Consensus 465 l------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 465 V------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp C------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred C------CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 3 6677777777766666666666777777777777666556666677777777777777654445665555566
Q ss_pred CceEEEccCCcccccchhhhHh----------------------------------------------------------
Q 007138 438 KLRRLDISDCKRLEGGFHRYMI---------------------------------------------------------- 459 (616)
Q Consensus 438 ~L~~L~l~~c~~l~~~~~~~~~---------------------------------------------------------- 459 (616)
+|++|++++| .+++.+|..+.
T Consensus 539 ~L~~L~Ls~N-~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 539 SLIWLDLNTN-LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TCCEEECCSS-EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCEEECCCC-ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 7777777763 45544443221
Q ss_pred ---------hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccc-cccccccccCCCCCCCCccce
Q 007138 460 ---------ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMV-SFPLEDKRLGTALPLPASLTT 529 (616)
Q Consensus 460 ---------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~-~l~~~~~~~~~~~~~~~~L~~ 529 (616)
.++++++|+.|++++|... ...+..+..+++|+.|++++| .+. .+|...+ .+++|++
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N--~l~g~ip~~l~-------~L~~L~~ 684 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLS----GYIPKEIGSMPYLFILNLGHN--DISGSIPDEVG-------DLRGLNI 684 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCB----SCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGG-------GCTTCCE
T ss_pred ceecccCchhhhccccccEEECcCCccc----ccCCHHHhccccCCEEeCcCC--ccCCCCChHHh-------CCCCCCE
Confidence 2334567777888777532 123445677788888888885 443 5666553 5788888
Q ss_pred EecccCccccccccccccCccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchh----hhhhhcCCCCcccccCCccE
Q 007138 530 LWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI----AEKCRKDGGQYWDLLTHIPH 605 (616)
Q Consensus 530 L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l----~~~~~~~~~~~w~~i~~i~~ 605 (616)
|++++|.-...+|..+..++.|++|++++|+--..+|..+.+..+....+.|+|.+ -..|....+++|++++|+++
T Consensus 685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC------------
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccc
Confidence 88888665557787888888888888888544455776655666666666666533 12688889999999999998
Q ss_pred E
Q 007138 606 V 606 (616)
Q Consensus 606 ~ 606 (616)
+
T Consensus 765 ~ 765 (768)
T 3rgz_A 765 H 765 (768)
T ss_dssp -
T ss_pred c
Confidence 5
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.5e-36 Score=334.00 Aligned_cols=438 Identities=17% Similarity=0.126 Sum_probs=213.0
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC----CCCCCccEEeecCCcch---hhh
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP----EHLPALEMLVIEGCEEL---LVS 88 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p----~~~~~L~~L~l~~c~~l---~~~ 88 (616)
++..+++|++|++.++. +.+..+. . ..++.+++|++|++++|. +.+..| ..+++|++|++++|..- +..
T Consensus 95 ~~~~l~~L~~L~Ls~n~-l~~~~~~-~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNS-LSGPVTT-L-TSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCTTCCEEECCSSE-EEEEGGG-G-GGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred hhccCCCCCEEECCCCc-CCCcCCC-h-HHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 35566777777777763 3332221 0 123667777777777764 333444 24567777777777621 122
Q ss_pred ---hcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCC--CCCCCCcEEEecCCCCcccccccchh
Q 007138 89 ---VASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLK--PRIPKLEELEIKNIENETYVWKSHNE 163 (616)
Q Consensus 89 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (616)
+..+++|++|++++|........ .....+...+..++. +.+.+| ..+++|+.|.+.++.... ..+.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~ 241 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHLDISGNKLSG----DFSR 241 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSC-CCSCCCBCTTCCSCCEEECCSSCCCS----CHHH
T ss_pred hhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCc-CCCCCcccccCCCCCEEECcCCcCCC----cccH
Confidence 56677777777777765542221 222233333222221 112222 223344444443332211 2334
Q ss_pred HHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCC-CCccEEEEcCCCCCCCC
Q 007138 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL-SSLREIEICKCSSLVSF 242 (616)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~ 242 (616)
.+..+++|++|++++|.....++.. .+ ++|++|++++|...+.+|..+... ++|++|++++|.....+
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~-------~l----~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL-------PL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC-------CC----TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred HHhcCCCCCEEECCCCcccCccCcc-------cc----CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 4556666666666665422221110 12 556666666665544556555443 66666666666432233
Q ss_pred C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-C-CCCCccEEEEecCCCCCccccccc
Q 007138 243 P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-Q-LPPSLKQLSISDCDNIRTLTVEEG 319 (616)
Q Consensus 243 ~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~-~~~~L~~L~l~~~~~l~~l~~~~~ 319 (616)
| .+..+++|++|++++|.....++.... ..+++|++|+++++.....++.. . ..++|+.|+++++.-...+ +..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~--~~~ 387 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTL-LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--LPN 387 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHH-TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC--CTT
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHH-hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc--Chh
Confidence 3 234466666666666653334443311 44566666666655321122221 1 1226666666665311111 111
Q ss_pred ccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccc
Q 007138 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERC 399 (616)
Q Consensus 320 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 399 (616)
+.. ..+++|++|++++|. ++. .+|..+..+ ++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 388 ~~~---~~~~~L~~L~L~~n~-l~~-----~~p~~l~~l------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 388 LCQ---NPKNTLQELYLQNNG-FTG-----KIPPTLSNC------SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp TTC---STTCCCCEEECCSSE-EEE-----ECCGGGGGC------TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred hhh---cccCCccEEECCCCc-ccc-----ccCHHHhcC------CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 100 013456666665532 221 122233333 55666666665555455555555556666666665
Q ss_pred cccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHH
Q 007138 400 GNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIW 479 (616)
Q Consensus 400 ~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 479 (616)
...+.+|..+..+++|+.|++++|.....+|.....+++|++|++++ +.+++.+|. .++++++|+.|++++|...
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~---~~~~l~~L~~L~L~~N~l~- 527 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN-NRLTGEIPK---WIGRLENLAILKLSNNSFS- 527 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCCSCCCG---GGGGCTTCCEEECCSSCCE-
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC-CccCCcCCh---HHhcCCCCCEEECCCCccc-
Confidence 55445555555556666666665543334444444445566666655 345544443 3445555556666555421
Q ss_pred HHhhhcCccccccCCccEEEEecC
Q 007138 480 KSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 480 ~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
...+..+..+++|+.|++++|
T Consensus 528 ---~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 528 ---GNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp ---EECCGGGGGCTTCCEEECCSS
T ss_pred ---CcCCHHHcCCCCCCEEECCCC
Confidence 112234455555666665553
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-32 Score=294.60 Aligned_cols=481 Identities=17% Similarity=0.127 Sum_probs=339.7
Q ss_pred CCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--ch-hhhhcCCC
Q 007138 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--EL-LVSVASLP 93 (616)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l-~~~~~~~~ 93 (616)
.+++++|++.++ .+.+..+... +.+++|++|++++|. +++..|. .+++|++|++++|. .+ +..+..++
T Consensus 31 ~~~l~~L~Ls~n-~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 31 PSSTKNIDLSFN-PLKILKSYSF----SNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTTTT----TTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCcCEEECCCC-CcCEeChhhc----cCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 377999999997 4566554333 789999999999985 5544453 46889999999997 22 46788999
Q ss_pred CccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccE
Q 007138 94 ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKR 173 (616)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 173 (616)
+|++|++++|.....+... -..+++|+.|.+.+...... ..+..++.+++|++
T Consensus 105 ~L~~L~L~~n~l~~~~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFP------------------------IGQLITLKKLNVAHNFIHSC---KLPAYFSNLTNLVH 157 (606)
T ss_dssp TCCEEECTTSCCCCSSSSC------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGTCTTCCE
T ss_pred cCCEEEccCCccccccccc------------------------cCCCCCCCEEeCCCCcccce---echHhHhhcCCCCE
Confidence 9999999999876543210 14567777777776654322 23556789999999
Q ss_pred EeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCC-CC-CCCCCCCC
Q 007138 174 LTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVS-FP-EVALPSKL 251 (616)
Q Consensus 174 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~~-~~~~~~~L 251 (616)
|+++++. ++.++.. .+..+..+...+++|++++|.. +.++.......+|++|++++|..... ++ .+..+++|
T Consensus 158 L~Ls~n~-l~~~~~~----~~~~l~~L~~~l~~L~l~~n~l-~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 158 VDLSYNY-IQTITVN----DLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp EECCSSC-CCEECTT----TTHHHHHCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred EEccCCc-ceecChh----hhhhhhccccccceeeccCCCc-ceeCcccccCceeeeeeccCCccchhHHHHHhcccccc
Confidence 9999975 5555443 2444433333467899999876 56665555555899999998843211 11 11223334
Q ss_pred cE--------------------------------EEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCC
Q 007138 252 KN--------------------------------IWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPS 299 (616)
Q Consensus 252 ~~--------------------------------L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 299 (616)
+. +++..+..+......+ ..+++|+.++++++. +..++....+++
T Consensus 232 ~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~ 308 (606)
T 3vq2_A 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFK 308 (606)
T ss_dssp EEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCC
T ss_pred ccccccccccccCCcccccChHHhhhhhhccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhhhcccccc
Confidence 43 3332222222221111 455889999998865 566765667789
Q ss_pred ccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch
Q 007138 300 LKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379 (616)
Q Consensus 300 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 379 (616)
|+.|++++|. ++.+ +. + . +++|++|+++++..+.. .+... + ++|++|++++|....
T Consensus 309 L~~L~l~~n~-l~~l--p~-~-~-----l~~L~~L~l~~n~~~~~-~~~~~-------l------~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 309 WQSLSIIRCQ-LKQF--PT-L-D-----LPFLKSLTLTMNKGSIS-FKKVA-------L------PSLSYLDLSRNALSF 364 (606)
T ss_dssp CSEEEEESCC-CSSC--CC-C-C-----CSSCCEEEEESCSSCEE-CCCCC-------C------TTCCEEECCSSCEEE
T ss_pred CCEEEccccc-Cccc--cc-C-C-----CCccceeeccCCcCccc-hhhcc-------C------CCCCEEECcCCccCC
Confidence 9999999995 4666 42 2 3 78999999999755554 22222 2 899999999986554
Q ss_pred h--hhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC-CCCCCCCCceEEEccCCcccccchhh
Q 007138 380 S--IAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLDISDCKRLEGGFHR 456 (616)
Q Consensus 380 ~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~ 456 (616)
. ++..+..+++|+.|++++|. +..+|..+..+++|+.|++++|......+ .....+++|++|++++| .+++..|.
T Consensus 365 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 442 (606)
T 3vq2_A 365 SGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDG 442 (606)
T ss_dssp EEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS-CCEECCTT
T ss_pred CcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC-CCCccchh
Confidence 3 36677889999999999987 66677888999999999999985433333 34456779999999995 57666654
Q ss_pred hHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCc
Q 007138 457 YMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFP 536 (616)
Q Consensus 457 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 536 (616)
.+.++++|+.|++++|.... ...+..+..+++|++|++++| .+..++... +..+++|++|++++|+
T Consensus 443 ---~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 443 ---IFLGLTSLNTLKMAGNSFKD---NTLSNVFANTTNLTFLDLSKC--QLEQISWGV------FDTLHRLQLLNMSHNN 508 (606)
T ss_dssp ---TTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCSSC
T ss_pred ---hhcCCCCCCEEECCCCcCCC---cchHHhhccCCCCCEEECCCC--cCCccChhh------hcccccCCEEECCCCc
Confidence 57889999999999986331 123556788999999999997 555554321 2368999999999965
Q ss_pred ccccc-ccccccCccccEEEecCCCCCcccCCCC-Cc-CCcceEEEcCCch
Q 007138 537 NLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKG-LP-SSLLQLQIYCCPL 584 (616)
Q Consensus 537 ~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~-~~L~~L~i~~c~~ 584 (616)
+..+ |..+..+++|++|++++ ++++.+|... .+ ++|++++++++|.
T Consensus 509 -l~~~~~~~~~~l~~L~~L~l~~-N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 509 -LLFLDSSHYNQLYSLSTLDCSF-NRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp -CSCEEGGGTTTCTTCCEEECTT-SCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred -CCCcCHHHccCCCcCCEEECCC-CcCcccCHhHhhhcccCcEEEccCCCc
Confidence 5554 66889999999999999 6788998852 23 4699999999763
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-31 Score=292.94 Aligned_cols=523 Identities=16% Similarity=0.149 Sum_probs=312.4
Q ss_pred CCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--chhh-hhcCCCC
Q 007138 21 PCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--ELLV-SVASLPA 94 (616)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l~~-~~~~~~~ 94 (616)
+++++|++.++ .+.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|. .++. .+..+++
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANF----TRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGG----GGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCC-CCCCcCHHHH----hCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 57888888886 3555443222 668888888888874 5434443 46788888888875 3333 4778888
Q ss_pred ccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCC---CCCCCcEEEecCCCCcccccccchhHHh--cCC
Q 007138 95 LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKP---RIPKLEELEIKNIENETYVWKSHNELLQ--DIC 169 (616)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~ 169 (616)
|++|++++|.....+ +..++....+...+..++.. .+..+. .+++|+.|.+.+..... ..+..+. .++
T Consensus 99 L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~~ 171 (680)
T 1ziw_A 99 LTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQA----LKSEELDIFANS 171 (680)
T ss_dssp CSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSSCCCC----BCHHHHGGGTTC
T ss_pred CCEEECCCCccCccC--hhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCCcccc----cCHHHhhccccc
Confidence 888888888765432 12344555555555444422 233333 45566666665543322 2333332 457
Q ss_pred CccEEeeccCCCccccchhhhhhHHhhhh--------------------hccCCCcEEEccCCCCCcccccccCCCCC--
Q 007138 170 SLKRLTITSCPKLQSLVAEEEKDQQQQLC--------------------ELSCRLEYLRLSNCEGLVKLPQSSLSLSS-- 227 (616)
Q Consensus 170 ~L~~L~l~~~~~l~~l~~~~~~~~l~~l~--------------------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-- 227 (616)
+|++|+++++. ++.+++..+. .+..+. ...++|+.|++++|...+..|..+..++.
T Consensus 172 ~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~ 249 (680)
T 1ziw_A 172 SLKKLELSSNQ-IKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTN 249 (680)
T ss_dssp EESEEECTTCC-CCCBCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSC
T ss_pred cccEEECCCCc-ccccChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCC
Confidence 88888888764 4433332110 000000 01156788888877765555666666644
Q ss_pred ccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCc-----ccc-----ccC
Q 007138 228 LREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLT-----YIA-----AVQ 295 (616)
Q Consensus 228 L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~-----~~~ 295 (616)
|++|++++|. ++.++ .+..+++|++|++++|......+..+ ..+++|+.|+++++..-. .++ ...
T Consensus 250 L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 250 LTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL--HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp CCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTT--TTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred CCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhh--cCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 8888888874 44443 34557888888888776333233222 455777777776542111 111 113
Q ss_pred CCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCC-cccccccCCCc----cccccccc----------
Q 007138 296 LPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPS-LTCIFSKNELP----ATLESLEV---------- 360 (616)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~~~~----~~l~~l~~---------- 360 (616)
.+++|+.|+++++ .+..+. +..+.. +++|++|+++++.. +.. .+...+. ..++.+.+
T Consensus 327 ~l~~L~~L~l~~n-~l~~~~-~~~~~~-----l~~L~~L~Ls~n~~~~~~-l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 327 WLKCLEHLNMEDN-DIPGIK-SNMFTG-----LINLKYLSLSNSFTSLRT-LTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp TCTTCCEEECCSC-CBCCCC-TTTTTT-----CTTCCEEECTTCBSCCCE-ECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred cCCCCCEEECCCC-ccCCCC-hhHhcc-----ccCCcEEECCCCchhhhh-cchhhhcccccCcCceEECCCCCCCeECh
Confidence 4567777777776 333320 222222 56677777766431 111 1111110 01111111
Q ss_pred ---CCCCCcccEEEecCCCCchhhh-hhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCC--CcccCCCCC
Q 007138 361 ---GNLPPSLKSLYVYGCSKLESIA-ERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN--LVSFPEGGL 434 (616)
Q Consensus 361 ---~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~ 434 (616)
..+ ++|+.|++++|...+.++ ..+..+++|+.|++++|......+..+..+++|+.|++++|.. +..+|....
T Consensus 399 ~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 399 DAFSWL-GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTC-TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhCC-CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 111 677777777776655454 4566677777777777765444455667777888888877642 234555556
Q ss_pred CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhh----cCccccccCCccEEEEecCCCccccc
Q 007138 435 PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIE----RGRGFHRFSSLRHLTIRGCDDDMVSF 510 (616)
Q Consensus 435 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~~l~~L~~L~i~~~~~~l~~l 510 (616)
.+++|++|++++ +.++++.+. .+..+++|+.|++++|......... ....+..+++|+.|++++| .++.+
T Consensus 478 ~l~~L~~L~Ls~-N~l~~i~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N--~l~~i 551 (680)
T 1ziw_A 478 PLRNLTILDLSN-NNIANINDD---MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN--GFDEI 551 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTT---TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS--CCCCC
T ss_pred cCCCCCEEECCC-CCCCcCChh---hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC--CCCCC
Confidence 677888888888 467766554 5677888888888888633211000 1123677888999999886 66666
Q ss_pred cccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCC---CcCCcceEEEcCCch
Q 007138 511 PLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKG---LPSSLLQLQIYCCPL 584 (616)
Q Consensus 511 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~~ 584 (616)
+... +..+++|++|++++ +.++.+|. .+..+++|++|++++ ++++.++... .+++|++++++++|.
T Consensus 552 ~~~~------~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 552 PVEV------FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CHHH------cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCCc
Confidence 6532 33678899999988 56788876 457888999999998 6888877642 357889999988763
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-31 Score=291.35 Aligned_cols=484 Identities=15% Similarity=0.108 Sum_probs=332.8
Q ss_pred CCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc---hhhhhcCCCC
Q 007138 21 PCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE---LLVSVASLPA 94 (616)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~---l~~~~~~~~~ 94 (616)
+++++|++.++ .+.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|.. .+..+..+++
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTF----SRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTS----TTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccCC-ccCcCChhHh----ccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 46999999987 4666654333 789999999999985 5544453 468899999999963 2457889999
Q ss_pred ccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEE
Q 007138 95 LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRL 174 (616)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 174 (616)
|++|++++|......... ...+++|+.|.+.+...... ..+. +..+++|++|
T Consensus 107 L~~L~L~~n~i~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~~~~-~~~l~~L~~L 158 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIP------------------------LHNQKTLESLYLGSNHISSI---KLPK-GFPTEKLKVL 158 (606)
T ss_dssp CCEEECTTSCCSCGGGSC------------------------CTTCTTCCEEECCSSCCCCC---CCCT-TCCCTTCCEE
T ss_pred ccEeeccccCcccCCcch------------------------hccCCcccEEECCCCccccc---Cccc-ccCCcccCEE
Confidence 999999999876642211 14566777777766544332 1222 2348888888
Q ss_pred eeccCCCccccchhhhhhHHhhhhhccCCCc--EEEccCCCCCcccccccCCCCCccEEEEcCCCCCC------------
Q 007138 175 TITSCPKLQSLVAEEEKDQQQQLCELSCRLE--YLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV------------ 240 (616)
Q Consensus 175 ~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~--~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~------------ 240 (616)
+++++. ++.+++. .+..+ ++|+ .|++++|... .++.......+|++|++++|..+.
T Consensus 159 ~L~~n~-l~~~~~~----~~~~l----~~L~~l~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~ 228 (606)
T 3t6q_A 159 DFQNNA-IHYLSKE----DMSSL----QQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQ 228 (606)
T ss_dssp ECCSSC-CCEECHH----HHHTT----TTCCSEEEECTTCCCC-EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEE
T ss_pred EcccCc-ccccChh----hhhhh----cccceeEEecCCCccC-ccChhHhhhccccccccCCchhHHHHhhhccccchh
Confidence 888865 5544332 35555 7777 7888887764 343334445678888887764210
Q ss_pred -------------CCCC--CCC--CCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCcccccc-CCCCCccE
Q 007138 241 -------------SFPE--VAL--PSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAV-QLPPSLKQ 302 (616)
Q Consensus 241 -------------~~~~--~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~ 302 (616)
.++. ... ..+|+.+++++|. +..++.... ..+++|++|+++++. ++.++.. ..+++|+.
T Consensus 229 ~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~ 305 (606)
T 3t6q_A 229 SLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY-FFNISSNTF-HCFSGLQELDLTATH-LSELPSGLVGLSTLKK 305 (606)
T ss_dssp EEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC-CSSCCTTTT-TTCTTCSEEECTTSC-CSCCCSSCCSCTTCCE
T ss_pred heechhhccccccccChhHhchhhcCceeEEEeecCc-cCccCHHHh-ccccCCCEEeccCCc-cCCCChhhcccccCCE
Confidence 0110 000 1278889998886 555554321 556889999999874 6666543 56689999
Q ss_pred EEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhh-
Q 007138 303 LSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESI- 381 (616)
Q Consensus 303 L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~- 381 (616)
|+++++. ++.+. +..+.. +++|++|+++++..... .+.. .+..+ ++|++|++++|......
T Consensus 306 L~l~~n~-l~~~~-~~~~~~-----l~~L~~L~l~~n~~~~~-~~~~----~~~~l------~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 306 LVLSANK-FENLC-QISASN-----FPSLTHLSIKGNTKRLE-LGTG----CLENL------ENLRELDLSHDDIETSDC 367 (606)
T ss_dssp EECTTCC-CSBGG-GGCGGG-----CTTCSEEECCSCSSCCB-CCSS----TTTTC------TTCCEEECCSSCCCEEEE
T ss_pred EECccCC-cCcCc-hhhhhc-----cCcCCEEECCCCCcccc-cchh----hhhcc------CcCCEEECCCCccccccC
Confidence 9999884 44431 233333 78899999998643222 2211 12233 88999999998766544
Q ss_pred -hhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhhHh
Q 007138 382 -AERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYMI 459 (616)
Q Consensus 382 -~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~ 459 (616)
+..+..+++|+.|++++|......+..+..+++|++|++++|......+.. ...+++|++|++++| .+++..|.
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--- 443 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQ--- 443 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTT---
T ss_pred cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHH---
Confidence 566888999999999998866666778889999999999998543333333 445679999999995 56666554
Q ss_pred hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 460 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
.+..+++|+.|++++|..... .......+..+++|+.|++++| .+..++... +..+++|++|++++|.-..
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKG-NIQKTNSLQTLGRLEILVLSFC--DLSSIDQHA------FTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGG-EECSSCGGGGCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECCSSCCCG
T ss_pred HHhCCCCCCEEECCCCCCCcc-ccccchhhccCCCccEEECCCC--ccCccChhh------hccccCCCEEECCCCccCc
Confidence 567889999999999863210 0112245788999999999997 555553321 3468999999999965444
Q ss_pred ccccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCch
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCPL 584 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~ 584 (616)
..|..+..++.| .|++++ +.+..+++..+ +++|+++++++||.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLAS-NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp GGGGGGTTCCSC-EEECCS-SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CChhHhCccccc-EEECcC-CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 556688899999 999999 67887776533 68999999999873
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-30 Score=285.05 Aligned_cols=464 Identities=15% Similarity=0.099 Sum_probs=327.8
Q ss_pred CCCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--h-hhh
Q 007138 15 DSPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--L-LVS 88 (616)
Q Consensus 15 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l-~~~ 88 (616)
.++..+++|++|++.++ .+.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|.. + +..
T Consensus 51 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~~----~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~ 124 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRC-QIYWIHEDTF----QSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIP 124 (606)
T ss_dssp TTSTTCTTCSEEECTTC-CCCEECTTTT----TTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSC
T ss_pred hHhccCccceEEECCCC-ccceeChhhc----cCccccCeeeCCCCc-ccccChhhhcccccccEeeccccCcccCCcch
Confidence 34778999999999998 4555554333 789999999999996 5545553 468999999999973 2 356
Q ss_pred hcCCCCccEEEeCCCcceee--cccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHh
Q 007138 89 VASLPALCKFEIGGCKKVVW--RSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQ 166 (616)
Q Consensus 89 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 166 (616)
+..+++|++|++++|..... +.. ..+++|+.|.+.+..... ..+..+.
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~--------------------------~~l~~L~~L~L~~n~l~~----~~~~~~~ 174 (606)
T 3t6q_A 125 LHNQKTLESLYLGSNHISSIKLPKG--------------------------FPTEKLKVLDFQNNAIHY----LSKEDMS 174 (606)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCTT--------------------------CCCTTCCEEECCSSCCCE----ECHHHHH
T ss_pred hccCCcccEEECCCCcccccCcccc--------------------------cCCcccCEEEcccCcccc----cChhhhh
Confidence 78899999999999987653 221 236788888887764432 4566788
Q ss_pred cCCCcc--EEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccc-------------------------
Q 007138 167 DICSLK--RLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP------------------------- 219 (616)
Q Consensus 167 ~l~~L~--~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~------------------------- 219 (616)
.+++|+ +|+++++. ++.+++.. +. . .+|+.|++++|..+...+
T Consensus 175 ~l~~L~~l~L~l~~n~-l~~~~~~~----~~-~----~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 175 SLQQATNLSLNLNGND-IAGIEPGA----FD-S----AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp TTTTCCSEEEECTTCC-CCEECTTT----TT-T----CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred hhcccceeEEecCCCc-cCccChhH----hh-h----ccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 899999 88888875 45444431 11 1 467788877765221111
Q ss_pred -cccCCCC--CccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccc-
Q 007138 220 -QSSLSLS--SLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA- 293 (616)
Q Consensus 220 -~~~~~l~--~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~- 293 (616)
..+..+. +|+.|++++| .++.++. +..+++|++|++++|. +..+|..+ ..+++|++|+++++. +..+..
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l--~~l~~L~~L~l~~n~-l~~~~~~ 319 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATH-LSELPSGL--VGLSTLKKLVLSANK-FENLCQI 319 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSC--CSCTTCCEEECTTCC-CSBGGGG
T ss_pred hhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCc-cCCCChhh--cccccCCEEECccCC-cCcCchh
Confidence 1111111 7889999988 4666663 5568999999999986 66777654 567899999999875 444432
Q ss_pred -cCCCCCccEEEEecCCCCCccccccc-ccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEE
Q 007138 294 -VQLPPSLKQLSISDCDNIRTLTVEEG-IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLY 371 (616)
Q Consensus 294 -~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 371 (616)
...+++|+.|+++++.....+ +.. +.. +++|++|+++++. ++.+.. .+..+..+ ++|++|+
T Consensus 320 ~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~-----l~~L~~L~l~~n~-l~~~~~---~~~~~~~l------~~L~~L~ 382 (606)
T 3t6q_A 320 SASNFPSLTHLSIKGNTKRLEL--GTGCLEN-----LENLRELDLSHDD-IETSDC---CNLQLRNL------SHLQSLN 382 (606)
T ss_dssp CGGGCTTCSEEECCSCSSCCBC--CSSTTTT-----CTTCCEEECCSSC-CCEEEE---STTTTTTC------TTCCEEE
T ss_pred hhhccCcCCEEECCCCCccccc--chhhhhc-----cCcCCEEECCCCc-cccccC---cchhcccC------CCCCEEE
Confidence 256689999999998544333 222 333 7899999999843 333110 12223333 8999999
Q ss_pred ecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccc
Q 007138 372 VYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450 (616)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 450 (616)
+++|...+..+..+..+++|+.|++++|......+. .+..+++|+.|++++|......+.....+++|++|++++| .+
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 461 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HF 461 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BC
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CC
Confidence 999987776777888899999999999876555443 4789999999999998544444555556779999999995 45
Q ss_pred ccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceE
Q 007138 451 EGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTL 530 (616)
Q Consensus 451 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L 530 (616)
++........+..+++|+.|++++|... ...+..+..+++|++|++++| .+..+.... +..+++| .|
T Consensus 462 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------l~~l~~L-~L 528 (606)
T 3t6q_A 462 PKGNIQKTNSLQTLGRLEILVLSFCDLS----SIDQHAFTSLKMMNHVDLSHN--RLTSSSIEA------LSHLKGI-YL 528 (606)
T ss_dssp GGGEECSSCGGGGCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSS--CCCGGGGGG------GTTCCSC-EE
T ss_pred CccccccchhhccCCCccEEECCCCccC----ccChhhhccccCCCEEECCCC--ccCcCChhH------hCccccc-EE
Confidence 5422212236788999999999998633 123456788999999999997 555444322 2368889 99
Q ss_pred ecccCcccccccc-ccccCccccEEEecCCCC
Q 007138 531 WISRFPNLERLSS-SIVDLQNLTELVLVNCPK 561 (616)
Q Consensus 531 ~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~ 561 (616)
++++| .+..+++ .+..+++|+++++++|+-
T Consensus 529 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 529 NLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp ECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 99995 4666554 678899999999999653
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=5.6e-31 Score=287.93 Aligned_cols=462 Identities=16% Similarity=0.089 Sum_probs=314.2
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--hh-hhh
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--LL-VSV 89 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l~-~~~ 89 (616)
++..+++|++|++.++ .+.+..+... +.+++|++|++++|. +++..|. .+++|++|++++|.. +. ..+
T Consensus 51 ~~~~l~~L~~L~Ls~n-~l~~i~~~~~----~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRC-EIETIEDKAW----HGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTTT----TTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred hccCCccCcEEeCCCC-cccccCHHHh----hchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCcccccccccc
Confidence 4778999999999997 5666654333 779999999999996 5544454 478899999999973 22 568
Q ss_pred cCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCC
Q 007138 90 ASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDIC 169 (616)
Q Consensus 90 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 169 (616)
..+++|++|++++|...... .+..+ ..+++|+.|.+.+..... ..+..++.++
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~-lp~~~----------------------~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~ 177 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCK-LPAYF----------------------SNLTNLVHVDLSYNYIQT----ITVNDLQFLR 177 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCC-CCGGG----------------------GTCTTCCEEECCSSCCCE----ECTTTTHHHH
T ss_pred CCCCCCCEEeCCCCccccee-chHhH----------------------hhcCCCCEEEccCCccee----cChhhhhhhh
Confidence 89999999999999865411 11111 345566666665543322 2223233333
Q ss_pred C----ccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCc-ccccccCCCCCccEEEE-----------
Q 007138 170 S----LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV-KLPQSSLSLSSLREIEI----------- 233 (616)
Q Consensus 170 ~----L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l----------- 233 (616)
+ +++|+++++. ++.++... + .. .+|++|++++|.... ..|..++.+++|+.+.+
T Consensus 178 ~L~~~l~~L~l~~n~-l~~~~~~~----~-~~----~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNP-IDFIQDQA----F-QG----IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp HCTTCCCEEECTTCC-CCEECTTT----T-TT----CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccceeeccCCC-cceeCccc----c-cC----ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 3 3467777654 44444331 1 11 356777777765431 33444455555544443
Q ss_pred ----------------------cCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc
Q 007138 234 ----------------------CKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI 291 (616)
Q Consensus 234 ----------------------~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 291 (616)
..+.....++....+++|+.|+++++. +..++.. ..+++|++|++++|.. ..+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~l---~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLEDV---PKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCCCC---CTTCCCSEEEEESCCC-SSC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhhhc---cccccCCEEEcccccC-ccc
Confidence 222222334455568899999998887 5666622 5668899999998764 777
Q ss_pred cccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEE
Q 007138 292 AAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLY 371 (616)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~ 371 (616)
+.. .+++|+.|+++++..+..+ .+. .+++|++|+++++ .++.+. ..+..+..+ ++|++|+
T Consensus 323 p~~-~l~~L~~L~l~~n~~~~~~----~~~-----~l~~L~~L~ls~n-~l~~~~---~~~~~~~~~------~~L~~L~ 382 (606)
T 3vq2_A 323 PTL-DLPFLKSLTLTMNKGSISF----KKV-----ALPSLSYLDLSRN-ALSFSG---CCSYSDLGT------NSLRHLD 382 (606)
T ss_dssp CCC-CCSSCCEEEEESCSSCEEC----CCC-----CCTTCCEEECCSS-CEEEEE---ECCHHHHCC------SCCCEEE
T ss_pred ccC-CCCccceeeccCCcCccch----hhc-----cCCCCCEEECcCC-ccCCCc---chhhhhccC------CcccEeE
Confidence 765 7789999999998655433 112 3788999999984 333210 112333333 8899999
Q ss_pred ecCCCCchhhhhhccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccc
Q 007138 372 VYGCSKLESIAERLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRL 450 (616)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 450 (616)
+++|. +..+|..+..+++|+.|++++|...+..+ ..+..+++|++|++++|......|.....+++|++|++++| .+
T Consensus 383 L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l 460 (606)
T 3vq2_A 383 LSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SF 460 (606)
T ss_dssp CCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EE
T ss_pred CCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cC
Confidence 99886 44466778888999999999987665555 46788999999999998655555665666779999999985 56
Q ss_pred cc-chhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccc-cccccccCCCCCCCCccc
Q 007138 451 EG-GFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSF-PLEDKRLGTALPLPASLT 528 (616)
Q Consensus 451 ~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l-~~~~~~~~~~~~~~~~L~ 528 (616)
++ .+|. .++.+++|+.|++++|... ...+..+..+++|++|++++| .+..+ +... ..+++|+
T Consensus 461 ~~~~~~~---~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~~-------~~l~~L~ 524 (606)
T 3vq2_A 461 KDNTLSN---VFANTTNLTFLDLSKCQLE----QISWGVFDTLHRLQLLNMSHN--NLLFLDSSHY-------NQLYSLS 524 (606)
T ss_dssp GGGEECS---CCTTCTTCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSS--CCSCEEGGGT-------TTCTTCC
T ss_pred CCcchHH---hhccCCCCCEEECCCCcCC----ccChhhhcccccCCEEECCCC--cCCCcCHHHc-------cCCCcCC
Confidence 55 3443 5678899999999998632 122346788999999999997 56555 3333 3689999
Q ss_pred eEecccCccccccccccccCc-cccEEEecCCCCCcc
Q 007138 529 TLWISRFPNLERLSSSIVDLQ-NLTELVLVNCPKLKY 564 (616)
Q Consensus 529 ~L~l~~c~~l~~i~~~~~~~~-~L~~L~l~~c~~l~~ 564 (616)
+|++++| .++.+|..+..++ +|++|++++++-..+
T Consensus 525 ~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 525 TLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred EEECCCC-cCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999995 5889998888887 599999999654433
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.7e-29 Score=280.01 Aligned_cols=212 Identities=19% Similarity=0.168 Sum_probs=156.4
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccc--ccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNL--KIL 405 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~ 405 (616)
+++|++|+++++. +....+. ..+..+ ++|++|++++|......+..+..+++|+.|++++|... +.+
T Consensus 404 l~~L~~L~L~~N~-l~~~~~~----~~~~~l------~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 404 LGHLEVLDLGLNE-IGQELTG----QEWRGL------ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp CTTCCEEECCSSC-CEEECCS----GGGTTC------TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred CCCCCEEeCCCCc-CccccCc----ccccCc------ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence 6677777777733 2211111 122223 89999999999876666677888999999999998643 567
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhh-----HhhhcccccceeeecCCChHHH
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRY-----MIALHNLTNLHSLYIGGNMEIW 479 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~ 479 (616)
|..+..+++|+.|++++| .+..++.. ...+++|++|++++ +.+++..+.. +..+..+++|+.|++++|...
T Consensus 473 p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~- 549 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD- 549 (680)
T ss_dssp SCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-
T ss_pred CcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-
Confidence 888999999999999998 56666654 34667999999999 4676643221 123788999999999998633
Q ss_pred HHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccc-cCccccEEEec
Q 007138 480 KSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIV-DLQNLTELVLV 557 (616)
Q Consensus 480 ~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~-~~~~L~~L~l~ 557 (616)
......+..+++|+.|++++| .++.++... +..+++|++|++++| .++.++. .+. .+++|++++++
T Consensus 550 ---~i~~~~~~~l~~L~~L~Ls~N--~l~~l~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 550 ---EIPVEVFKDLFELKIIDLGLN--NLNTLPASV------FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp ---CCCTTTTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECT
T ss_pred ---CCCHHHcccccCcceeECCCC--CCCcCCHhH------hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEcc
Confidence 122335788999999999987 777777653 336899999999994 6887775 344 68999999999
Q ss_pred CCCCCccc
Q 007138 558 NCPKLKYF 565 (616)
Q Consensus 558 ~c~~l~~l 565 (616)
+++-..+-
T Consensus 618 ~N~~~c~c 625 (680)
T 1ziw_A 618 FNPFDCTC 625 (680)
T ss_dssp TCCCCBCC
T ss_pred CCCcccCC
Confidence 97655443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5.8e-28 Score=272.97 Aligned_cols=510 Identities=15% Similarity=0.119 Sum_probs=335.2
Q ss_pred ccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCccccc-C---CCCCCccEEeecCCcc--h-hhhhc
Q 007138 18 IPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTF-P---EHLPALEMLVIEGCEE--L-LVSVA 90 (616)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-p---~~~~~L~~L~l~~c~~--l-~~~~~ 90 (616)
.-.+++++|++.++ .+.+..+... +.+++|++|++++|.... .+ | ..+++|+.|++++|.. + +..+.
T Consensus 21 ~lp~~l~~LdLs~N-~i~~i~~~~~----~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 21 QVLNTTERLLLSFN-YIRTVTASSF----PFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SSCTTCCEEEEESC-CCCEECSSSC----SSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCCcCEEECCCC-cCCccChhHC----cccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 34578999999987 4666655444 789999999999995443 44 3 3578899999999972 2 46788
Q ss_pred CCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCC
Q 007138 91 SLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICS 170 (616)
Q Consensus 91 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 170 (616)
.+++|++|++++|........ +..-..+++|+.|.+.+...... .+...++.+++
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~----------------------~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~ 149 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLK----------------------DGYFRNLKALTRLDLSKNQIRSL---YLHPSFGKLNS 149 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCST----------------------TCCCSSCSSCCEEEEESCCCCCC---CCCGGGGTCSS
T ss_pred CCcccCEeeCcCCCCCccccc----------------------CccccccCCCCEEECCCCccccc---ccchhHhhCCC
Confidence 999999999999976541100 00014567888888877655433 34456799999
Q ss_pred ccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCC------ccEEEEcCCCCCCCCC-
Q 007138 171 LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSS------LREIEICKCSSLVSFP- 243 (616)
Q Consensus 171 L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~------L~~L~l~~~~~l~~~~- 243 (616)
|++|+++++. ++.+... .+..+.. ++|+.|++++|......|..++.+.+ |+.|++++|......+
T Consensus 150 L~~L~Ls~N~-i~~~~~~----~l~~l~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 222 (844)
T 3j0a_A 150 LKSIDFSSNQ-IFLVCEH----ELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222 (844)
T ss_dssp CCEEEEESSC-CCCCCSG----GGHHHHH--CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTS
T ss_pred CCEEECCCCc-CCeeCHH----HcccccC--CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHH
Confidence 9999999865 4443332 2333321 68999999999886677776666665 9999999985333333
Q ss_pred ---CCCCCCCCcEEEccCCCC--------ccccch-hhccCCCCCccEEEeccCCCCcccccc--CCCCCccEEEEecCC
Q 007138 244 ---EVALPSKLKNIWISTCDA--------LKSLPE-AWMCDTNSSLEILSIHGCRSLTYIAAV--QLPPSLKQLSISDCD 309 (616)
Q Consensus 244 ---~~~~~~~L~~L~l~~~~~--------l~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~ 309 (616)
......+++.+.+..+.. +..... .+.....++|++|+++++. +..+... ..+++|+.|+++++
T Consensus 223 ~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n- 300 (844)
T 3j0a_A 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN- 300 (844)
T ss_dssp GGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESC-
T ss_pred HHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCC-
Confidence 122346778887763221 111111 1111223789999998864 4444322 55689999999988
Q ss_pred CCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCC
Q 007138 310 NIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNT 389 (616)
Q Consensus 310 ~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 389 (616)
.++.+. +..+.. +++|++|+++++ .++.+ .+..+..+ ++|+.|++++|......+..+..++
T Consensus 301 ~i~~~~-~~~~~~-----l~~L~~L~Ls~N-~l~~~-----~~~~~~~l------~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 301 KINKIA-DEAFYG-----LDNLQVLNLSYN-LLGEL-----YSSNFYGL------PKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CCCEEC-TTTTTT-----CSSCCEEEEESC-CCSCC-----CSCSCSSC------TTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred cCCCCC-hHHhcC-----CCCCCEEECCCC-CCCcc-----CHHHhcCC------CCCCEEECCCCCCCccChhhhcCCC
Confidence 444431 223333 788999999884 34431 12233333 8899999999865444445577789
Q ss_pred CccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhccccccee
Q 007138 390 SLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHS 469 (616)
Q Consensus 390 ~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~ 469 (616)
+|+.|++++|. ++.++ .+++|+.|++++| .+..+|... .+++.+++++ +.+++... ...+..+++|+.
T Consensus 363 ~L~~L~Ls~N~-l~~i~----~~~~L~~L~l~~N-~l~~l~~~~---~~l~~L~ls~-N~l~~l~~--~~~~~~l~~L~~ 430 (844)
T 3j0a_A 363 KLQTLDLRDNA-LTTIH----FIPSIPDIFLSGN-KLVTLPKIN---LTANLIHLSE-NRLENLDI--LYFLLRVPHLQI 430 (844)
T ss_dssp CCCEEEEETCC-SCCCS----SCCSCSEEEEESC-CCCCCCCCC---TTCCEEECCS-CCCCSSTT--HHHHTTCTTCCE
T ss_pred CCCEEECCCCC-CCccc----CCCCcchhccCCC-Ccccccccc---cccceeeccc-CccccCch--hhhhhcCCccce
Confidence 99999999876 34333 4788999999988 555666542 3688999988 56666422 224568889999
Q ss_pred eecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccC
Q 007138 470 LYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDL 548 (616)
Q Consensus 470 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~ 548 (616)
|++++|.... ......+..+++|+.|++++| .+...+... .....+..+++|++|++++| .++.++. .+..+
T Consensus 431 L~Ls~N~l~~---~~~~~~~~~~~~L~~L~Ls~N--~l~~~~~~~-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 503 (844)
T 3j0a_A 431 LILNQNRFSS---CSGDQTPSENPSLEQLFLGEN--MLQLAWETE-LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHL 503 (844)
T ss_dssp EEEESCCCCC---CCSSSSSCSCTTCCBCEEESC--CCSSSCCSC-CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSC
T ss_pred eeCCCCcccc---cccccccccCCccccccCCCC--ccccccccc-cchhhhcCcccccEEECCCC-cccccChhHccch
Confidence 9999886321 011123455788999999986 444332211 11123446788999999984 6777665 57788
Q ss_pred ccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchhhhhhhcCCCCcccccCCccEEEEcCeec
Q 007138 549 QNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRV 613 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~~~~~~~~~ 613 (616)
++|++|++++ ++++.++.....++|++|+++++..... ....+..+..+.+.++.+
T Consensus 504 ~~L~~L~Ls~-N~l~~l~~~~~~~~L~~L~Ls~N~l~~~--------~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 504 TALRGLSLNS-NRLTVLSHNDLPANLEILDISRNQLLAP--------NPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CSCSEEEEES-CCCSSCCCCCCCSCCCEEEEEEECCCCC--------CSCCCSSCCEEEEEEECC
T ss_pred hhhheeECCC-CCCCccChhhhhccccEEECCCCcCCCC--------ChhHhCCcCEEEecCCCc
Confidence 9999999998 7888888877778899998887753221 112234566666665543
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.8e-28 Score=264.89 Aligned_cols=371 Identities=17% Similarity=0.154 Sum_probs=231.4
Q ss_pred CCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCc--chh-hhhcCCC
Q 007138 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCE--ELL-VSVASLP 93 (616)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~--~l~-~~~~~~~ 93 (616)
+++|++|++.++. +.+..+... +.+++|++|++++|. +.+..|. .+++|++|++++|. .+. ..+..++
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~----~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDL----RACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTT----SSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCccEEECcCCc-cCccChhhh----hcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 4689999999984 666654333 779999999999985 5544443 46889999999997 233 4588999
Q ss_pred CccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccE
Q 007138 94 ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKR 173 (616)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 173 (616)
+|++|++++|........ ..-..+++|+.|.+.++..... .+...+..+++|++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~-----------------------~~~~~l~~L~~L~L~~n~~~~~---~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVT-----------------------SLFPNLTNLQTLRIGNVETFSE---IRRIDFAGLTSLNE 152 (549)
T ss_dssp TCCEEECTTCCCSSSCSS-----------------------CSCTTCTTCCEEEEEESSSCCE---ECTTTTTTCCEEEE
T ss_pred CCcEEECCCCcccccchh-----------------------hhhhccCCccEEECCCCccccc---cCHhhhhcccccCe
Confidence 999999999976542110 0014567888888877653322 55566788999999
Q ss_pred EeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccccc-CCCCCccEEEEcCCCCCCCCC-----CCCC
Q 007138 174 LTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSS-LSLSSLREIEICKCSSLVSFP-----EVAL 247 (616)
Q Consensus 174 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~~-----~~~~ 247 (616)
|+++++. ++...+. .+..+ ++|++|++++|.. ..+|..+ +.+++|++|++++|. ++.++ ....
T Consensus 153 L~L~~n~-l~~~~~~----~l~~l----~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 153 LEIKALS-LRNYQSQ----SLKSI----RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEV 221 (549)
T ss_dssp EEEEETT-CCEECTT----TTTTC----SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCC
T ss_pred eeccCCc-ccccChh----hhhcc----ccCceEecccCcc-cccchhhHhhcccccEEEccCCc-cccccccccchhhh
Confidence 9999876 4432221 25555 7899999988775 4555543 568899999999884 44432 2234
Q ss_pred CCCCcEEEccCCCCccccchhh--ccCCCCCccEEEeccCCCCcccc--------ccCCCCCccEEEEecCCCCCccccc
Q 007138 248 PSKLKNIWISTCDALKSLPEAW--MCDTNSSLEILSIHGCRSLTYIA--------AVQLPPSLKQLSISDCDNIRTLTVE 317 (616)
Q Consensus 248 ~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~--------~~~~~~~L~~L~l~~~~~l~~l~~~ 317 (616)
+++|+.|++.++......+..+ ....+++|+.+++++|. +..+. .....++++.+.+.++. +......
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~ 299 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLF 299 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGS
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccc-cchhhhc
Confidence 7889999998876222111111 01334778888888764 21111 11344677777777663 2211000
Q ss_pred ccccccccccCCCccEEeccCCCCcccccccCCCcccc-cccccCCCCCcccEEEecCCCCchhhhh---hccCCCCccE
Q 007138 318 EGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL-ESLEVGNLPPSLKSLYVYGCSKLESIAE---RLDNNTSLET 393 (616)
Q Consensus 318 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l-~~l~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~ 393 (616)
.... ......++|++|+++++. +.. +|..+ ..+ ++|++|++++|...+.+|. .+..+++|+.
T Consensus 300 ~~l~-~~~~~~~~L~~L~l~~n~-l~~------ip~~~~~~l------~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 300 YDLS-TVYSLLEKVKRITVENSK-VFL------VPCSFSQHL------KSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp CCCC-HHHHHSTTCCEEEEESSC-CCC------CCHHHHHHC------TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred ccch-hhhhhcccceEEEeccCc-ccc------CCHHHHhcC------ccccEEEccCCccccccccchhhhhccccCcE
Confidence 0000 000113567777777732 332 23222 223 6778888887776665543 2556777888
Q ss_pred EEccccccccccc---ccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 394 ISIERCGNLKILP---SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 394 L~l~~~~~l~~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
|++++|. ++.++ ..+..+++|++|++++| .++.+|.....+++|++|++++| .+++
T Consensus 366 L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N-~l~~ 424 (549)
T 2z81_A 366 LVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRV 424 (549)
T ss_dssp EECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS-CCSC
T ss_pred EEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC-Cccc
Confidence 8887765 33333 24667778888888777 55567666555667777777774 3543
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=2.9e-28 Score=263.22 Aligned_cols=458 Identities=16% Similarity=0.138 Sum_probs=258.0
Q ss_pred CCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCcceeecccccccCCCCcee
Q 007138 49 FPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 122 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 122 (616)
+++|++|++++|. +++..|. .+++|++|++++|.. + +..+..+++|++|++++|.....+...
T Consensus 25 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------- 93 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---------- 93 (549)
T ss_dssp CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH----------
T ss_pred CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH----------
Confidence 4677777777774 4433332 356677777776652 1 134666777777777776654422110
Q ss_pred ecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccC
Q 007138 123 CRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSC 202 (616)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~ 202 (616)
-..+++|+.|.+.+...... ..+..++.+++|++|+++++..+..++.. .+..+ +
T Consensus 94 --------------~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l----~ 148 (549)
T 2z81_A 94 --------------FGPLSSLKYLNLMGNPYQTL---GVTSLFPNLTNLQTLRIGNVETFSEIRRI----DFAGL----T 148 (549)
T ss_dssp --------------HTTCTTCCEEECTTCCCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTC----C
T ss_pred --------------hccCCCCcEEECCCCccccc---chhhhhhccCCccEEECCCCccccccCHh----hhhcc----c
Confidence 02345555555554433221 12234566666666666666544444332 23334 6
Q ss_pred CCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCC--CCCCCCcEEEccCCCCccccc--hhhccCCCCCcc
Q 007138 203 RLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV--ALPSKLKNIWISTCDALKSLP--EAWMCDTNSSLE 278 (616)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~ 278 (616)
+|++|++++|...+..|..++.+++|++|++++|. ...++.. ..+++|++|++++|. +...+ ........++|+
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCC
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhccc
Confidence 66666666666544556666666666666666653 3333321 235666666666665 22221 000112345566
Q ss_pred EEEeccCCCCcccc------ccCCCCCccEEEEecCCCCCcc-cccccccccccccCCCccEEeccCCCCcccccccCCC
Q 007138 279 ILSIHGCRSLTYIA------AVQLPPSLKQLSISDCDNIRTL-TVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNEL 351 (616)
Q Consensus 279 ~L~l~~~~~l~~~~------~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 351 (616)
.|+++++. +.... .....++++.+++++|.. ..+ .++.. .......+++++.|.+.++. +........+
T Consensus 227 ~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l 302 (549)
T 2z81_A 227 KLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTL-NGLGDFNPS-ESDVVSELGKVETVTIRRLH-IPQFYLFYDL 302 (549)
T ss_dssp EEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEE-ECCSCCCCC-TTTCCCCCTTCCEEEEESCB-CSCGGGSCCC
T ss_pred ceeccccc-cchhHHHHHHHHhhhhccccccccccccc-ccccccccc-chhhhhhhcccccccccccc-cchhhhcccc
Confidence 66666542 11100 012345666666666631 111 00000 00011124556666666532 1111111111
Q ss_pred cccccccccCCCCCcccEEEecCCCCchhhhhhc-cCCCCccEEEcccccccccccc---cccCCCCCcEEEeccCCCCc
Q 007138 352 PATLESLEVGNLPPSLKSLYVYGCSKLESIAERL-DNNTSLETISIERCGNLKILPS---GLHNLRQLQGIKIWNCGNLV 427 (616)
Q Consensus 352 ~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~---~l~~l~~L~~L~l~~~~~~~ 427 (616)
+...... ++++.|++++|. +..+|..+ ..+++|+.|++++|...+.+|. .+..+++|+.|++++| .++
T Consensus 303 ~~~~~~~------~~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 374 (549)
T 2z81_A 303 STVYSLL------EKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLR 374 (549)
T ss_dssp CHHHHHS------TTCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCC
T ss_pred hhhhhhc------ccceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-ccc
Confidence 1111111 678888888875 44566655 4678888888888876555532 3567888888888887 444
Q ss_pred ccCC---CCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCC
Q 007138 428 SFPE---GGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504 (616)
Q Consensus 428 ~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 504 (616)
.++. ....+++|++|++++| .++.. |. .+..+++|+.|++++|.... .+. .-.++|+.|++++|
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~---~~~~~~~L~~L~Ls~N~l~~-----l~~--~~~~~L~~L~Ls~N- 441 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRN-TFHPM-PD---SCQWPEKMRFLNLSSTGIRV-----VKT--CIPQTLEVLDVSNN- 441 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTC-CCCCC-CS---CCCCCTTCCEEECTTSCCSC-----CCT--TSCTTCSEEECCSS-
T ss_pred ccccchhhhhcCCCCCEEECCCC-CCccC-Ch---hhcccccccEEECCCCCccc-----ccc--hhcCCceEEECCCC-
Confidence 4431 2334558888888885 56643 32 45677888888888875221 000 11257888888886
Q ss_pred CccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcCC
Q 007138 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCC 582 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c 582 (616)
.++.++. .+++|++|++++| .++.+|. ...+++|++|++++ ++++.+++.. .+++|++|++++|
T Consensus 442 -~l~~~~~----------~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 442 -NLDSFSL----------FLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp -CCSCCCC----------CCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred -Chhhhcc----------cCChhcEEECCCC-ccCcCCC-cccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCC
Confidence 5555432 5788999999984 6788885 56788999999998 6888877753 3688999999887
Q ss_pred c
Q 007138 583 P 583 (616)
Q Consensus 583 ~ 583 (616)
+
T Consensus 508 ~ 508 (549)
T 2z81_A 508 P 508 (549)
T ss_dssp C
T ss_pred C
Confidence 6
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=257.79 Aligned_cols=476 Identities=18% Similarity=0.156 Sum_probs=286.1
Q ss_pred CCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCC---CCCCccEEeecCCcc--h-hhhhcCCC
Q 007138 20 FPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEE--L-LVSVASLP 93 (616)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~--l-~~~~~~~~ 93 (616)
.+++++|++.++ .+.+..+... ..+++|++|++++|. +.+..|. .+++|++|++++|.- + +..+..++
T Consensus 27 ~~~l~~L~Ls~n-~l~~~~~~~~----~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 27 PFSTKNLDLSFN-PLRHLGSYSF----FSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp CSSCCEEECCSC-CCCEECTTTT----TTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred cccccEEEccCC-ccCccChhHh----hCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 357999999987 4555544333 779999999999995 5533333 478899999999962 2 25688899
Q ss_pred CccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccE
Q 007138 94 ALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKR 173 (616)
Q Consensus 94 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 173 (616)
+|++|++++|.....+... -..+++|+.|.+.+...... ..+..++.+++|++
T Consensus 101 ~L~~L~L~~n~l~~l~~~~------------------------~~~l~~L~~L~L~~n~l~~~---~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFP------------------------IGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEH 153 (570)
T ss_dssp TCCEEECTTSCCCCSTTCS------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCE
T ss_pred ccccccccccccccCCCcc------------------------ccccccccEEecCCCcccee---cChhhhcccCCCCE
Confidence 9999999999876644311 14567788888776544322 23456789999999
Q ss_pred EeeccCCCccccchhhhhhHHhhhhhccCCC----cEEEccCCCCCcccccccCCCCCccEEEEcCCCCCC-CCC-CCCC
Q 007138 174 LTITSCPKLQSLVAEEEKDQQQQLCELSCRL----EYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLV-SFP-EVAL 247 (616)
Q Consensus 174 L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L----~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~-~~~~ 247 (616)
|+++++. ++.++.. .+..+ .+| +.|++++|......|..+... +|++|++++|.... .++ ....
T Consensus 154 L~l~~n~-l~~~~~~----~~~~l----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~ 223 (570)
T 2z63_A 154 LDLSSNK-IQSIYCT----DLRVL----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQG 223 (570)
T ss_dssp EECTTSC-CCEECGG----GGHHH----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHT
T ss_pred EeCcCCc-cceecHH----Hccch----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcC
Confidence 9999875 5555443 35555 455 899999988744444445444 89999999873211 111 1122
Q ss_pred CCCCcEEEccCC-----CCccccchhh-ccCCCCCccEEEeccCCCCccccc--cCCCCCccEEEEecCCCCCccccccc
Q 007138 248 PSKLKNIWISTC-----DALKSLPEAW-MCDTNSSLEILSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLTVEEG 319 (616)
Q Consensus 248 ~~~L~~L~l~~~-----~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~ 319 (616)
+.+++...+... ..+..++... .....-.++.++++++..+..... ...+++|+.|+++++ .++.+ +..
T Consensus 224 l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l--~~~ 300 (570)
T 2z63_A 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERV--KDF 300 (570)
T ss_dssp TTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSC--CBC
T ss_pred ccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhh--hhh
Confidence 444444333211 1111111110 000012344555554422211111 133456777777666 33333 443
Q ss_pred ccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccc
Q 007138 320 IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERC 399 (616)
Q Consensus 320 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 399 (616)
+.. + +|++|+++++. +.. ++...+ ++|+.|++++|.....++. ..+++|+.|++++|
T Consensus 301 ~~~-----~-~L~~L~l~~n~-~~~-l~~~~l-------------~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n 357 (570)
T 2z63_A 301 SYN-----F-GWQHLELVNCK-FGQ-FPTLKL-------------KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN 357 (570)
T ss_dssp CSC-----C-CCSEEEEESCB-CSS-CCBCBC-------------SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS
T ss_pred hcc-----C-CccEEeeccCc-ccc-cCcccc-------------cccCEEeCcCCcccccccc--ccCCCCCEEeCcCC
Confidence 333 3 67777777643 222 221111 6677777777655444332 55667777777766
Q ss_pred cccccc--cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChH
Q 007138 400 GNLKIL--PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNME 477 (616)
Q Consensus 400 ~~l~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~ 477 (616)
...... +..+..+++|++|++++| .+..++.....+++|++|++++| .+++..+. ..+.++++|+.|++++|..
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTS-EEESCTTS--CTTTTCTTCCEEECTTSCC
T ss_pred ccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCC-ccccccch--hhhhcCCCCCEEeCcCCcc
Confidence 533221 445566777777777776 34444433444557777777763 44444331 1355667777777776642
Q ss_pred HHHHhhhcCccccccCCccEEEEecCCCccc--cccccccccCCCCCCCCccceEecccCcccccc-ccccccCccccEE
Q 007138 478 IWKSMIERGRGFHRFSSLRHLTIRGCDDDMV--SFPLEDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDLQNLTEL 554 (616)
Q Consensus 478 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~--~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L 554 (616)
. ...+..+..+++|++|++++| .+. .++... ..+++|++|++++|. +..+ |..+..+++|++|
T Consensus 434 ~----~~~~~~~~~l~~L~~L~l~~n--~l~~~~~p~~~-------~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 434 R----VAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIF-------TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp E----ECCTTTTTTCTTCCEEECTTC--EEGGGEECSCC-------TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred c----ccchhhhhcCCcCcEEECcCC--cCccccchhhh-------hcccCCCEEECCCCc-cccCChhhhhcccCCCEE
Confidence 1 112235677888888888886 332 344333 367888999998864 5554 6577888899999
Q ss_pred EecCCCCCcccCCCC--CcCCcceEEEcCCc
Q 007138 555 VLVNCPKLKYFPEKG--LPSSLLQLQIYCCP 583 (616)
Q Consensus 555 ~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 583 (616)
++++ ++++.++... .+++|++|++++++
T Consensus 500 ~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCC-CcCCCCCHHHhhcccCCcEEEecCCc
Confidence 9988 5777777643 36788899988865
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-27 Score=265.51 Aligned_cols=378 Identities=13% Similarity=0.123 Sum_probs=220.7
Q ss_pred CCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCCC------------------------------
Q 007138 21 PCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPEH------------------------------ 70 (616)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~------------------------------ 70 (616)
.++.+|+|.++ .+....+... +.+++|++|+++.+..+.|..|..
T Consensus 323 ~~V~~L~Ls~~-~L~G~ip~~l----~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~ 397 (876)
T 4ecn_A 323 GRVTGLSLAGF-GAKGRVPDAI----GQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397 (876)
T ss_dssp SCEEEEECTTT-CCEEEECGGG----GGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEECccC-CCCCcCchHH----hccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcc
Confidence 57999999987 4565555343 889999999995444444332210
Q ss_pred ------------------------CCCccEEeecC--Cc--chhhhhcCCCCccEEEeCCCcceeecccccccCCCCcee
Q 007138 71 ------------------------LPALEMLVIEG--CE--ELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 122 (616)
Q Consensus 71 ------------------------~~~L~~L~l~~--c~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 122 (616)
...++.+.+.. +. .++..+..+++|++|++++|..... .++..+..
T Consensus 398 ~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~-~i~~~~~~----- 471 (876)
T 4ecn_A 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD-NIAVDWED----- 471 (876)
T ss_dssp GGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGG-GBSSSCSC-----
T ss_pred hhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCC-cccccccc-----
Confidence 11122222222 11 2567788999999999999986541 00000000
Q ss_pred ecCCCcceeecCCCCCC-----CCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc--cchhhhhhHHh
Q 007138 123 CRDTSNQVFLAGPLKPR-----IPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQ 195 (616)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~l~ 195 (616)
... ..++|.+|.. +++|+.|.+.++.... ..+..++.+++|++|+++++..++. +|.. +.
T Consensus 472 ---~s~-n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-----i~ 538 (876)
T 4ecn_A 472 ---ANS-DYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNIACNRGISAAQLKAD-----WT 538 (876)
T ss_dssp ---TTS-HHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-----HH
T ss_pred ---ccc-ccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEECcCCCCcccccchHH-----HH
Confidence 000 0112234443 5566677776654433 2336678999999999998864553 4432 44
Q ss_pred hhh---hccCCCcEEEccCCCCCccccc--ccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhc
Q 007138 196 QLC---ELSCRLEYLRLSNCEGLVKLPQ--SSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWM 270 (616)
Q Consensus 196 ~l~---~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 270 (616)
.+. ...++|++|++++|.. +.+|. .++.+++|+.|++++|. ++.+|.+..+++|+.|++++|. +..++..+
T Consensus 539 ~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l- 614 (876)
T 4ecn_A 539 RLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ-IEEIPEDF- 614 (876)
T ss_dssp HHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC-CSCCCTTS-
T ss_pred hhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc-cccchHHH-
Confidence 431 1225899999999887 48888 89999999999999985 5688877778999999999887 44666543
Q ss_pred cCCCCC-ccEEEeccCCCCcccccc-CCC--CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCccccc
Q 007138 271 CDTNSS-LEILSIHGCRSLTYIAAV-QLP--PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIF 346 (616)
Q Consensus 271 ~~~~~~-L~~L~l~~~~~l~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 346 (616)
..+++ |+.|+++++. +..++.. ... ++|+.|++++|.-...+ +
T Consensus 615 -~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i--p----------------------------- 661 (876)
T 4ecn_A 615 -CAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG--R----------------------------- 661 (876)
T ss_dssp -CEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS--S-----------------------------
T ss_pred -hhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc--c-----------------------------
Confidence 34455 7777777654 3344322 111 12555555444211111 0
Q ss_pred ccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhc-cCCCCccEEEcccccccccccccccC--------CCCCcE
Q 007138 347 SKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL-DNNTSLETISIERCGNLKILPSGLHN--------LRQLQG 417 (616)
Q Consensus 347 ~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~l~~--------l~~L~~ 417 (616)
.++..+..+. . ++|+.|++++|... .+|..+ ..+++|+.|++++|. +..+|..+.. +++|+.
T Consensus 662 ---~l~~~l~~~~---~-~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 662 ---NISCSMDDYK---G-INASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp ---SCSSCTTTCC---C-CCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred ---cchhhhcccc---C-CCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccE
Confidence 0100010000 0 46777777776544 455443 366777777777764 3456554322 237788
Q ss_pred EEeccCCCCcccCCCCC--CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCC
Q 007138 418 IKIWNCGNLVSFPEGGL--PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGG 474 (616)
Q Consensus 418 L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~ 474 (616)
|++++| .+..+|.... .+++|+.|++++ +.+++ +|. .+.++++|+.|++++
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~-N~L~~-lp~---~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSY-NCFSS-FPT---QPLNSSQLKAFGIRH 785 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCS-SCCSS-CCC---GGGGCTTCCEEECCC
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCC-CCCCc-cch---hhhcCCCCCEEECCC
Confidence 888777 4556666554 566788888877 45655 332 233444444444443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=3.8e-28 Score=265.50 Aligned_cols=346 Identities=16% Similarity=0.209 Sum_probs=257.5
Q ss_pred HhhhhhccCCCcEEEccCCCCCcc-----------------cccccC--CCCCccEEEEcCCCCCCCCC-CCCCCCCCcE
Q 007138 194 QQQLCELSCRLEYLRLSNCEGLVK-----------------LPQSSL--SLSSLREIEICKCSSLVSFP-EVALPSKLKN 253 (616)
Q Consensus 194 l~~l~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~~ 253 (616)
+.++ ++|++|++++|...+. +|..++ ++++|++|++++|.....+| .+..+++|++
T Consensus 202 l~~l----~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 202 VMRL----TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp GGGC----TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred Hhcc----cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 5555 8999999999886443 899888 99999999999997777777 4567999999
Q ss_pred EEccCCCCcc--ccchhhcc----CCCCCccEEEeccCCCCccccc---cCCCCCccEEEEecCCCCC-ccccccccccc
Q 007138 254 IWISTCDALK--SLPEAWMC----DTNSSLEILSIHGCRSLTYIAA---VQLPPSLKQLSISDCDNIR-TLTVEEGIQSS 323 (616)
Q Consensus 254 L~l~~~~~l~--~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~ 323 (616)
|++++|..+. .+|..+.. ..+++|++|+++++. ++.++. ...+++|+.|+++++. ++ .+ + .+..
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~i--p-~~~~- 351 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEGKL--P-AFGS- 351 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEEEC--C-CCEE-
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Cccch--h-hhCC-
Confidence 9999987444 36654321 123789999999875 557765 4677899999999884 44 55 4 3433
Q ss_pred ccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCc-ccEEEecCCCCchhhhhhccCCC--CccEEEccccc
Q 007138 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPS-LKSLYVYGCSKLESIAERLDNNT--SLETISIERCG 400 (616)
Q Consensus 324 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~ 400 (616)
+++|++|+++++ .++ .+|..+..+ ++ |++|++++|... .+|..+...+ +|+.|++++|.
T Consensus 352 ----l~~L~~L~L~~N-~l~------~lp~~l~~l------~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 352 ----EIKLASLNLAYN-QIT------EIPANFCGF------TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp ----EEEESEEECCSS-EEE------ECCTTSEEE------CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred ----CCCCCEEECCCC-ccc------cccHhhhhh------cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 678999999884 333 244445555 77 999999998755 7787666554 89999999998
Q ss_pred cccccccccc-------CCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhh----hcccccce
Q 007138 401 NLKILPSGLH-------NLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIA----LHNLTNLH 468 (616)
Q Consensus 401 ~l~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~----~~~l~~L~ 468 (616)
..+.+|..+. .+++|++|++++| .+..+|...+ .+++|++|++++ +.++.+.+..... +.++++|+
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCC
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCcc
Confidence 7777777776 7789999999998 5567776544 356899999998 4666433321111 23445999
Q ss_pred eeecCCChHHHHHhhhcCcccc--ccCCccEEEEecCCCccccccccccccCCCCCCCCccceEeccc------Cccccc
Q 007138 469 SLYIGGNMEIWKSMIERGRGFH--RFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISR------FPNLER 540 (616)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~~~~~--~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~ 540 (616)
.|++++|... ..+..+. .+++|++|++++| .++.+|.... .+++|++|++++ +...+.
T Consensus 492 ~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~~-------~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 492 SIDLRFNKLT-----KLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPL-------NSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp EEECCSSCCC-----BCCGGGSTTTCTTCCEEECCSS--CCSSCCCGGG-------GCSSCCEEECCSCBCTTCCBCCCC
T ss_pred EEECcCCcCC-----ccChhhhhccCCCcCEEECCCC--CCCCcChhhh-------cCCCCCEEECCCCcccccCccccc
Confidence 9999998633 1233444 8899999999997 6666777653 689999999954 444667
Q ss_pred cccccccCccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchh
Q 007138 541 LSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 541 i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 585 (616)
+|..+..+++|++|++++ ++++.+|.. +.++|++|++++|+..
T Consensus 558 ~p~~l~~l~~L~~L~Ls~-N~l~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGS-NDIRKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CCTTGGGCSSCCEEECCS-SCCCBCCSC-CCTTCCEEECCSCTTC
T ss_pred ChHHHhcCCCCCEEECCC-CcCCccCHh-HhCcCCEEECcCCCCc
Confidence 888899999999999999 677999875 4489999999999643
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=259.19 Aligned_cols=477 Identities=15% Similarity=0.079 Sum_probs=292.0
Q ss_pred CCCcceEeeccCCCcccccC---CCCCCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCcceeecccccccCCCCcee
Q 007138 49 FPKLRELHIISCSKLQGTFP---EHLPALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVV 122 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p---~~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 122 (616)
.+++++|+++++. +++..+ ..+++|++|++++|.- + +..+..+++|++|++++|.....+..
T Consensus 27 ~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~----------- 94 (570)
T 2z63_A 27 PFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG----------- 94 (570)
T ss_dssp CSSCCEEECCSCC-CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-----------
T ss_pred cccccEEEccCCc-cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh-----------
Confidence 4567888887774 442222 2467777777777752 2 23466777777777777765543210
Q ss_pred ecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc--cchhhhhhHHhhhhhc
Q 007138 123 CRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS--LVAEEEKDQQQQLCEL 200 (616)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~l~~l~~~ 200 (616)
.-..+++|+.|.+.+..... .+...++.+++|++|+++++. ++. ++. .+..+
T Consensus 95 -------------~~~~l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~-----~~~~l--- 148 (570)
T 2z63_A 95 -------------AFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNL-IQSFKLPE-----YFSNL--- 148 (570)
T ss_dssp -------------TTTTCTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSC-CCCCCCCG-----GGGGC---
T ss_pred -------------hhcCcccccccccccccccc----CCCccccccccccEEecCCCc-cceecChh-----hhccc---
Confidence 00345666666665543322 222235677777777777754 332 222 24455
Q ss_pred cCCCcEEEccCCCCCcccccccCCCCCc----cEEEEcCCCCCCCCC-CCCCCCCCcEEEccCCCCcc-ccchhhccCCC
Q 007138 201 SCRLEYLRLSNCEGLVKLPQSSLSLSSL----REIEICKCSSLVSFP-EVALPSKLKNIWISTCDALK-SLPEAWMCDTN 274 (616)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~ 274 (616)
++|++|++++|......+..++.+++| +.|++++|. ++.++ ......+|+.|++.++..-. .++..+ ..+
T Consensus 149 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~l 224 (570)
T 2z63_A 149 -TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI--QGL 224 (570)
T ss_dssp -TTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHH--HTT
T ss_pred -CCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhh--cCc
Confidence 677777777766543344556666666 677777763 44333 22223367777776653111 111111 223
Q ss_pred CCccEEEec--cCC---CCccccccC--CC--CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccc
Q 007138 275 SSLEILSIH--GCR---SLTYIAAVQ--LP--PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCI 345 (616)
Q Consensus 275 ~~L~~L~l~--~~~---~l~~~~~~~--~~--~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 345 (616)
+.++...+. ... .+..++... .. -.++.+.+.++..+... .+..+.. +++|++|+++++. ++
T Consensus 225 ~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~-----l~~L~~L~l~~~~-l~-- 295 (570)
T 2z63_A 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNC-----LTNVSSFSLVSVT-IE-- 295 (570)
T ss_dssp TTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESC-STTTTGG-----GTTCSEEEEESCE-EC--
T ss_pred cccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhh-chhhhcC-----cCcccEEEecCcc-ch--
Confidence 333333221 111 111111110 00 13566666665332221 1233333 7889999999852 22
Q ss_pred cccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCC
Q 007138 346 FSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425 (616)
Q Consensus 346 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~ 425 (616)
.+|..+.. .+|++|++++|... .+|. ..+++|+.|++++|......+. ..+++|++|++++|.
T Consensus 296 ----~l~~~~~~-------~~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~- 358 (570)
T 2z63_A 296 ----RVKDFSYN-------FGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG- 358 (570)
T ss_dssp ----SCCBCCSC-------CCCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-
T ss_pred ----hhhhhhcc-------CCccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-
Confidence 23333322 37899999998655 5664 5778999999999886555543 789999999999984
Q ss_pred Cccc---CCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEec
Q 007138 426 LVSF---PEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 426 ~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
+... +.....+++|++|++++| .+++..+ .+..+++|+.|++++|.... ......+..+++|++|++++
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~----~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS----NFLGLEQLEHLDFQHSNLKQ---MSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE----EEETCTTCCEEECTTSEEES---CTTSCTTTTCTTCCEEECTT
T ss_pred cCccccccccccccCccCEEECCCC-ccccccc----cccccCCCCEEEccCCcccc---ccchhhhhcCCCCCEEeCcC
Confidence 4433 333445669999999995 5665543 37789999999999986321 11123578899999999999
Q ss_pred CCCccccccccccccCCCCCCCCccceEecccCccc-cccccccccCccccEEEecCCCCCcccCCC--CCcCCcceEEE
Q 007138 503 CDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL-ERLSSSIVDLQNLTELVLVNCPKLKYFPEK--GLPSSLLQLQI 579 (616)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i 579 (616)
| .+...... .+..+++|++|++++|... ..+|..+..+++|++|++++ +.+..+++. ..+++|++|++
T Consensus 431 n--~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 431 T--HTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp S--CCEECCTT------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEEC
T ss_pred C--cccccchh------hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCC-CccccCChhhhhcccCCCEEeC
Confidence 6 44333221 1236899999999997643 36888899999999999999 577777443 33789999999
Q ss_pred cCCchhhhhhhcCCCCcccccCCccEEEEcCeeccC
Q 007138 580 YCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRVFG 615 (616)
Q Consensus 580 ~~c~~l~~~~~~~~~~~w~~i~~i~~~~~~~~~~~~ 615 (616)
++|. +... ....+..+.++..+.+.++.+.+
T Consensus 502 ~~n~-l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 ASNQ-LKSV----PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSSC-CSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCc-CCCC----CHHHhhcccCCcEEEecCCcccC
Confidence 9985 3321 11234667788889888887654
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=6e-28 Score=263.89 Aligned_cols=370 Identities=16% Similarity=0.196 Sum_probs=273.3
Q ss_pred chhHHhcCCCccEEeeccCCCccc------------------cchhhhhhHHh--hhhhccCCCcEEEccCCCCCccccc
Q 007138 161 HNELLQDICSLKRLTITSCPKLQS------------------LVAEEEKDQQQ--QLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~------------------l~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+..++.+++|++|+++++. ++. +|.. +. .+ ++|++|++++|...+.+|.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~-----l~~~~l----~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED-----LKWDNL----KDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-----CCGGGC----TTCCEEEEECCTTCSSCCT
T ss_pred CCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh-----hhhccc----CCCCEEEecCCcCCccChH
Confidence 44567999999999999977 555 4433 44 56 8999999999998889999
Q ss_pred ccCCCCCccEEEEcCCCCCC--CCCC-CCC------CCCCcEEEccCCCCccccch--hhccCCCCCccEEEeccCCCCc
Q 007138 221 SSLSLSSLREIEICKCSSLV--SFPE-VAL------PSKLKNIWISTCDALKSLPE--AWMCDTNSSLEILSIHGCRSLT 289 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~--~~~~-~~~------~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~l~ 289 (616)
.++++++|++|++++|..++ .+|. +.. +++|++|++++|. +..+|. .+ ..+++|++|+++++. +.
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l--~~l~~L~~L~L~~N~-l~ 343 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSL--QKMKKLGMLECLYNQ-LE 343 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHH--TTCTTCCEEECCSCC-CE
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhh--ccCCCCCEEeCcCCc-Cc
Confidence 99999999999999986355 3552 223 3899999999997 557776 43 677899999999875 55
Q ss_pred -cccccCCCCCccEEEEecCCCCCcccccccccccccccCCC-ccEEeccCCCCcccccccCCCcccccccccCCCCCcc
Q 007138 290 -YIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL-LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSL 367 (616)
Q Consensus 290 -~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L 367 (616)
.++....+++|+.|+++++ .++.+ +..+.. +++ |++|+++++. ++. +|..+..+.. ++|
T Consensus 344 g~ip~~~~l~~L~~L~L~~N-~l~~l--p~~l~~-----l~~~L~~L~Ls~N~-l~~------lp~~~~~~~l----~~L 404 (636)
T 4eco_A 344 GKLPAFGSEIKLASLNLAYN-QITEI--PANFCG-----FTEQVENLSFAHNK-LKY------IPNIFDAKSV----SVM 404 (636)
T ss_dssp EECCCCEEEEEESEEECCSS-EEEEC--CTTSEE-----ECTTCCEEECCSSC-CSS------CCSCCCTTCS----SCE
T ss_pred cchhhhCCCCCCCEEECCCC-ccccc--cHhhhh-----hcccCcEEEccCCc-Ccc------cchhhhhccc----Ccc
Confidence 6664455679999999988 45544 665555 778 9999999844 443 2333222211 589
Q ss_pred cEEEecCCCCchhhhhhcc-------CCCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcccCCCCCCCC--
Q 007138 368 KSLYVYGCSKLESIAERLD-------NNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVSFPEGGLPCA-- 437 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~-- 437 (616)
+.|++++|...+.+|..+. .+++|+.|++++|.. +.+|..+ ..+++|++|++++| .+..+|...+...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENE 482 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccc
Confidence 9999999988887777776 778999999999874 4676654 56899999999998 4558887665432
Q ss_pred ------CceEEEccCCcccccchhhhHhhhc--ccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC-----C
Q 007138 438 ------KLRRLDISDCKRLEGGFHRYMIALH--NLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC-----D 504 (616)
Q Consensus 438 ------~L~~L~l~~c~~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~-----~ 504 (616)
+|++|++++| .++. +|. .+. .+++|+.|++++|.... .+..+..+++|+.|++++| +
T Consensus 483 ~~~~l~~L~~L~Ls~N-~l~~-lp~---~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFN-KLTK-LSD---DFRATTLPYLVGIDLSYNSFSK-----FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp ECTTGGGCCEEECCSS-CCCB-CCG---GGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred cccccCCccEEECcCC-cCCc-cCh---hhhhccCCCcCEEECCCCCCCC-----cChhhhcCCCCCEEECCCCcccccC
Confidence 8999999994 6764 443 444 89999999999997431 3456778999999999763 1
Q ss_pred CccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCC----------cCCc
Q 007138 505 DDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL----------PSSL 574 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~----------~~~L 574 (616)
.....+|.... .+++|++|++++| .++.+|..+. ++|++|++++ +.+..+..... +...
T Consensus 553 ~l~~~~p~~l~-------~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~~ 621 (636)
T 4eco_A 553 RTLREWPEGIT-------LCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKD-NPNISIDLSYVCPYIEAGMYMLFYD 621 (636)
T ss_dssp BCCCCCCTTGG-------GCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCS-CTTCEEECTTTHHHHHTTCCEEECC
T ss_pred cccccChHHHh-------cCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcC-CCCccccHHhcchhhhcccceeecC
Confidence 22345555443 6899999999995 5699997654 8999999999 56666554322 1233
Q ss_pred ceEEEcCCchhh
Q 007138 575 LQLQIYCCPLIA 586 (616)
Q Consensus 575 ~~L~i~~c~~l~ 586 (616)
+..++.+|+.++
T Consensus 622 ~~~~i~~C~~L~ 633 (636)
T 4eco_A 622 KTQDIRGCDALD 633 (636)
T ss_dssp TTSEEESCGGGC
T ss_pred CccccCCCcccc
Confidence 455788888764
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=255.56 Aligned_cols=447 Identities=17% Similarity=0.122 Sum_probs=282.3
Q ss_pred ceEeeccCCCcccccCCCC-CCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCcceeecc-cccccCCCCceeecCCC
Q 007138 53 RELHIISCSKLQGTFPEHL-PALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVVWRS-ATDHLGSQNSVVCRDTS 127 (616)
Q Consensus 53 ~~L~l~~c~~l~~~~p~~~-~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 127 (616)
++|+++++. ++ .+|..+ ++|++|++++|.. + +..+..+++|++|++++|....... ..
T Consensus 3 ~~l~ls~n~-l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--------------- 65 (520)
T 2z7x_B 3 FLVDRSKNG-LI-HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF--------------- 65 (520)
T ss_dssp CEEECTTSC-CS-SCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG---------------
T ss_pred ceEecCCCC-cc-cccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh---------------
Confidence 356666653 44 455432 5677777777652 2 2457777788888888777655321 11
Q ss_pred cceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEE
Q 007138 128 NQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYL 207 (616)
Q Consensus 128 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L 207 (616)
..+++|+.|.+.+..-.. ++.. .+++|++|+++++. ++.++.. ..+..+ ++|++|
T Consensus 66 ----------~~l~~L~~L~Ls~N~l~~----lp~~---~l~~L~~L~L~~N~-l~~~~~p---~~~~~l----~~L~~L 120 (520)
T 2z7x_B 66 ----------KFNQELEYLDLSHNKLVK----ISCH---PTVNLKHLDLSFNA-FDALPIC---KEFGNM----SQLKFL 120 (520)
T ss_dssp ----------TTCTTCCEEECCSSCCCE----EECC---CCCCCSEEECCSSC-CSSCCCC---GGGGGC----TTCCEE
T ss_pred ----------hcccCCCEEecCCCceee----cCcc---ccCCccEEeccCCc-cccccch---hhhccC----CcceEE
Confidence 345556666555543322 2222 67888888888875 4432110 135556 788888
Q ss_pred EccCCCCCcccccccCCCCCc--cEEEEcCCCC--CCCCCC-CCCCC-CCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 208 RLSNCEGLVKLPQSSLSLSSL--REIEICKCSS--LVSFPE-VALPS-KLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 208 ~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++++|.... ..++.+++| ++|++++|.. ....|. +..+. ....+++.++.....++.... ..+++|+.++
T Consensus 121 ~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~-~~l~~L~~L~ 196 (520)
T 2z7x_B 121 GLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV-KTVANLELSN 196 (520)
T ss_dssp EEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCC-TTCSEEEECC
T ss_pred EecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhh-hcccceeecc
Confidence 888877533 235556666 8888888754 222221 11111 223456666654444433211 4467888888
Q ss_pred eccCC-------CCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccc
Q 007138 282 IHGCR-------SLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPAT 354 (616)
Q Consensus 282 l~~~~-------~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 354 (616)
++++. ....++.....++|+.|+++++. +....+.. ... ....++|++|+++++. ++. .+|..
T Consensus 197 l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~-~~~--~~~~~~L~~L~l~~n~-l~~-----~~p~~ 266 (520)
T 2z7x_B 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE-TTWNSFIR-ILQ--LVWHTTVWYFSISNVK-LQG-----QLDFR 266 (520)
T ss_dssp EEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE-EEHHHHHH-HHH--HHHTSSCSEEEEEEEE-EES-----CCCCC
T ss_pred ccccccccccceeecchhhhccccchhhccccccc-cCHHHHHH-HHH--HhhhCcccEEEeeccc-ccC-----ccccc
Confidence 88754 11122223456788888887763 22211111 000 0113579999998853 221 23333
Q ss_pred c-----cccccCCCCCcccEEEecCCCCchhhh-hhccCC---CCccEEEcccccccccccccccCCCCCcEEEeccCCC
Q 007138 355 L-----ESLEVGNLPPSLKSLYVYGCSKLESIA-ERLDNN---TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGN 425 (616)
Q Consensus 355 l-----~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~ 425 (616)
+ ..+ ++|+.++++++.. .+| ..+..+ ++|+.|++++|.... ++ ....+++|++|++++|..
T Consensus 267 ~~~~~~~~l------~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 267 DFDYSGTSL------KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML-CPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp CCCCCSCCC------CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCC
T ss_pred hhhcccccC------ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc-cc-chhhCCcccEEEeECCcc
Confidence 3 333 8899999998866 455 223222 579999999987433 22 126889999999999965
Q ss_pred CcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCC
Q 007138 426 LVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDD 505 (616)
Q Consensus 426 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 505 (616)
...+|.....+++|++|++++| .+++. +.....++++++|+.|++++|.... ......+..+++|++|++++|
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~l~~L~~L~Ls~N~l~~---~l~~~~~~~l~~L~~L~Ls~N-- 409 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMN-QLKEL-SKIAEMTTQMKSLQQLDISQNSVSY---DEKKGDCSWTKSLLSLNMSSN-- 409 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSS-CCCBH-HHHHHHHTTCTTCCEEECCSSCCBC---CGGGCSCCCCTTCCEEECCSS--
T ss_pred ChhhhhhhccCCCCCEEEccCC-ccCcc-ccchHHHhhCCCCCEEECCCCcCCc---ccccchhccCccCCEEECcCC--
Confidence 5556776677789999999994 66652 2223467899999999999986331 012224677899999999996
Q ss_pred ccc-cccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcCC
Q 007138 506 DMV-SFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCC 582 (616)
Q Consensus 506 ~l~-~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c 582 (616)
.+. .++.. ..++|++|++++| .++.+|..+..+++|++|++++ ++++.+|... .+++|++|+++++
T Consensus 410 ~l~~~~~~~---------l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 410 ILTDTIFRC---------LPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCGGGGGS---------CCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcchhhh---------hcccCCEEECCCC-cccccchhhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCC
Confidence 443 33332 2379999999995 6889998788999999999999 6899999853 3789999999987
Q ss_pred c
Q 007138 583 P 583 (616)
Q Consensus 583 ~ 583 (616)
+
T Consensus 479 ~ 479 (520)
T 2z7x_B 479 P 479 (520)
T ss_dssp C
T ss_pred C
Confidence 6
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1e-26 Score=262.76 Aligned_cols=479 Identities=14% Similarity=0.074 Sum_probs=322.5
Q ss_pred CCCcceEeeccCCCcccccCC---CCCCccEEeecCCcch----hhhhcCCCCccEEEeCCCcceeecc-cccccCCCCc
Q 007138 49 FPKLRELHIISCSKLQGTFPE---HLPALEMLVIEGCEEL----LVSVASLPALCKFEIGGCKKVVWRS-ATDHLGSQNS 120 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p~---~~~~L~~L~l~~c~~l----~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 120 (616)
.++|++|+++++. +++..|. .+++|++|++++|... +..+..+++|++|++++|....... ..
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-------- 93 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-------- 93 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS--------
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc--------
Confidence 6899999999985 5534443 5788999999999533 4668999999999999998766421 11
Q ss_pred eeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccc-hhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhh
Q 007138 121 VVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSH-NELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCE 199 (616)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~ 199 (616)
..+++|+.|.+.++.-... .+ ...++.+++|++|+++++. ++.+... ..+.++
T Consensus 94 -----------------~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~---~~~~~L-- 147 (844)
T 3j0a_A 94 -----------------QGLFHLFELRLYFCGLSDA---VLKDGYFRNLKALTRLDLSKNQ-IRSLYLH---PSFGKL-- 147 (844)
T ss_dssp -----------------CSCSSCCCEECTTCCCSSC---CSTTCCCSSCSSCCEEEEESCC-CCCCCCC---GGGGTC--
T ss_pred -----------------cCCcccCEeeCcCCCCCcc---cccCccccccCCCCEEECCCCc-ccccccc---hhHhhC--
Confidence 3566777777766544321 22 2347899999999999976 4443221 236666
Q ss_pred ccCCCcEEEccCCCCCcccccccCCC--CCccEEEEcCCCCCCCCC-CCCCCC------CCcEEEccCCCCccccchhhc
Q 007138 200 LSCRLEYLRLSNCEGLVKLPQSSLSL--SSLREIEICKCSSLVSFP-EVALPS------KLKNIWISTCDALKSLPEAWM 270 (616)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~-~~~~~~------~L~~L~l~~~~~l~~~~~~~~ 270 (616)
++|++|++++|......+..++.+ ++|+.|++++|......+ ....++ +|+.|++++|......+..+.
T Consensus 148 --~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 148 --NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp --SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred --CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHH
Confidence 899999999988755667777766 899999999986444443 222333 499999999864433433321
Q ss_pred -cCCCCCccEEEeccCC--------CCcccccc----CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEecc
Q 007138 271 -CDTNSSLEILSIHGCR--------SLTYIAAV----QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDIS 337 (616)
Q Consensus 271 -~~~~~~L~~L~l~~~~--------~l~~~~~~----~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 337 (616)
......++.+.++.+. .+...... ..+++|+.|+++++. +..+. +..+.. +++|+.|+++
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~-~~~~~~-----l~~L~~L~L~ 298 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLN-SRVFET-----LKDLKVLNLA 298 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEEC-SCCSSS-----CCCCCEEEEE
T ss_pred hhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccC-hhhhhc-----CCCCCEEECC
Confidence 1233678888876321 11111111 123689999998884 44331 233333 7889999999
Q ss_pred CCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcE
Q 007138 338 SCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQG 417 (616)
Q Consensus 338 ~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~ 417 (616)
++ .++.+.+ ..+..+ ++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.
T Consensus 299 ~n-~i~~~~~-----~~~~~l------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 299 YN-KINKIAD-----EAFYGL------DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SC-CCCEECT-----TTTTTC------SSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred CC-cCCCCCh-----HHhcCC------CCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 84 4444221 222333 88999999999776666778888999999999998643333446788999999
Q ss_pred EEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccE
Q 007138 418 IKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRH 497 (616)
Q Consensus 418 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 497 (616)
|++++| .+..++. +++|+.+++++ +.++.. |. ...+++.++++.|..... .....+..+++|+.
T Consensus 367 L~Ls~N-~l~~i~~----~~~L~~L~l~~-N~l~~l-~~------~~~~l~~L~ls~N~l~~l---~~~~~~~~l~~L~~ 430 (844)
T 3j0a_A 367 LDLRDN-ALTTIHF----IPSIPDIFLSG-NKLVTL-PK------INLTANLIHLSENRLENL---DILYFLLRVPHLQI 430 (844)
T ss_dssp EEEETC-CSCCCSS----CCSCSEEEEES-CCCCCC-CC------CCTTCCEEECCSCCCCSS---TTHHHHTTCTTCCE
T ss_pred EECCCC-CCCcccC----CCCcchhccCC-CCcccc-cc------cccccceeecccCccccC---chhhhhhcCCccce
Confidence 999998 4555543 45899999998 456543 21 245788999998863210 00012357899999
Q ss_pred EEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc------ccccccCccccEEEecCCCCCcccCCCC--
Q 007138 498 LTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL------SSSIVDLQNLTELVLVNCPKLKYFPEKG-- 569 (616)
Q Consensus 498 L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i------~~~~~~~~~L~~L~l~~c~~l~~l~~~~-- 569 (616)
|++++| .+..++... ....+++|+.|++++| .+..+ +..+..+++|++|++++ ++++.++...
T Consensus 431 L~Ls~N--~l~~~~~~~-----~~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~ 501 (844)
T 3j0a_A 431 LILNQN--RFSSCSGDQ-----TPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFS 501 (844)
T ss_dssp EEEESC--CCCCCCSSS-----SSCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSS
T ss_pred eeCCCC--ccccccccc-----ccccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCC-CcccccChhHcc
Confidence 999997 555443321 1235789999999995 45432 23577899999999999 6888888754
Q ss_pred CcCCcceEEEcCCchhhhhhhcCCCCcccccCCccEEEEcCeeccC
Q 007138 570 LPSSLLQLQIYCCPLIAEKCRKDGGQYWDLLTHIPHVVIDDKRVFG 615 (616)
Q Consensus 570 ~~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i~~i~~~~~~~~~~~~ 615 (616)
.+++|++|+++++. ++.. .+... -..+..+.+.++.+.+
T Consensus 502 ~l~~L~~L~Ls~N~-l~~l-----~~~~~-~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 502 HLTALRGLSLNSNR-LTVL-----SHNDL-PANLEILDISRNQLLA 540 (844)
T ss_dssp SCCSCSEEEEESCC-CSSC-----CCCCC-CSCCCEEEEEEECCCC
T ss_pred chhhhheeECCCCC-CCcc-----Chhhh-hccccEEECCCCcCCC
Confidence 37899999999985 3321 11111 1677788887776543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=5.7e-27 Score=260.48 Aligned_cols=276 Identities=17% Similarity=0.221 Sum_probs=185.6
Q ss_pred chhHHhcCCCccEEeeccCCCccc------------------cchhhhhhHHh--hhhhccCCCcEEEccCCCCCccccc
Q 007138 161 HNELLQDICSLKRLTITSCPKLQS------------------LVAEEEKDQQQ--QLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~------------------l~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
.+..++.+++|++|+++++. ++. +|.. +. .+ ++|++|++++|...+.+|.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~-----l~f~~L----~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE-----LSWSNL----KDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-----CCGGGC----TTCCEEEEESCTTCCSCCG
T ss_pred hhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh-----hhhccC----CCCCEEECcCCCCCccChH
Confidence 34557889999999999876 444 3332 33 55 8899999999888788898
Q ss_pred ccCCCCCccEEEEcCCCCCCC--CC--------CCCCCCCCcEEEccCCCCccccch--hhccCCCCCccEEEeccCCCC
Q 007138 221 SSLSLSSLREIEICKCSSLVS--FP--------EVALPSKLKNIWISTCDALKSLPE--AWMCDTNSSLEILSIHGCRSL 288 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~~--~~--------~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~l 288 (616)
.++++++|+.|++++|..++. +| ....+++|++|++++|. +..+|. .+ ..+++|+.|+++++. +
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l--~~L~~L~~L~Ls~N~-l 585 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASL--QKMVKLGLLDCVHNK-V 585 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHH--TTCTTCCEEECTTSC-C
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhh--hcCCCCCEEECCCCC-c
Confidence 899999999999998863443 44 22346689999999887 457776 33 667889999998865 5
Q ss_pred ccccccCCCCCccEEEEecCCCCCcccccccccccccccCCC-ccEEeccCCCCcccccccCCCcccccccccCCCCCcc
Q 007138 289 TYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCL-LEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSL 367 (616)
Q Consensus 289 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L 367 (616)
..++....+++|+.|+++++ .+..+ +..+.. +++ |++|+++++. ++. +|..+..+.. ++|
T Consensus 586 ~~lp~~~~L~~L~~L~Ls~N-~l~~l--p~~l~~-----l~~~L~~L~Ls~N~-L~~------lp~~~~~~~~----~~L 646 (876)
T 4ecn_A 586 RHLEAFGTNVKLTDLKLDYN-QIEEI--PEDFCA-----FTDQVEGLGFSHNK-LKY------IPNIFNAKSV----YVM 646 (876)
T ss_dssp CBCCCCCTTSEESEEECCSS-CCSCC--CTTSCE-----ECTTCCEEECCSSC-CCS------CCSCCCTTCS----SCE
T ss_pred ccchhhcCCCcceEEECcCC-ccccc--hHHHhh-----ccccCCEEECcCCC-CCc------Cchhhhcccc----CCC
Confidence 57775567788899998888 45544 555554 677 8889888843 433 2222222200 458
Q ss_pred cEEEecCCCCchhhhhh---cc--CCCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcccCCCCCCC-----
Q 007138 368 KSLYVYGCSKLESIAER---LD--NNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVSFPEGGLPC----- 436 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~----- 436 (616)
+.|++++|...+.+|.. .. ..++|+.|++++|.. ..+|..+ ..+++|+.|++++| .+..+|...+..
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccc
Confidence 88888888766544422 22 345888888888764 4666654 47888888888887 555777655432
Q ss_pred ---CCceEEEccCCcccccchhhhHhhhc--ccccceeeecCCCh
Q 007138 437 ---AKLRRLDISDCKRLEGGFHRYMIALH--NLTNLHSLYIGGNM 476 (616)
Q Consensus 437 ---~~L~~L~l~~c~~l~~~~~~~~~~~~--~l~~L~~L~l~~~~ 476 (616)
++|+.|++++| .++. +|. .+. .+++|+.|++++|.
T Consensus 725 ~nl~~L~~L~Ls~N-~L~~-lp~---~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 725 KNTYLLTTIDLRFN-KLTS-LSD---DFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp TTGGGCCEEECCSS-CCCC-CCG---GGSTTTCTTCCEEECCSSC
T ss_pred cccCCccEEECCCC-CCcc-chH---HhhhccCCCcCEEEeCCCC
Confidence 27888888884 5653 332 222 44455555555443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=247.56 Aligned_cols=448 Identities=15% Similarity=0.082 Sum_probs=270.4
Q ss_pred ceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC---CCCCCccEEeecCCcc--h-hhhhcCCCCccE
Q 007138 24 ETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP---EHLPALEMLVIEGCEE--L-LVSVASLPALCK 97 (616)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~ 97 (616)
++|++.++ .+.++. ... +++|++|++++|. +.+..| ..+++|++|++++|.- + +..+..+++|++
T Consensus 3 ~~l~ls~n-~l~~ip-~~~------~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 73 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVP-KDL------SQKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73 (520)
T ss_dssp CEEECTTS-CCSSCC-CSC------CTTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCE
T ss_pred ceEecCCC-Cccccc-ccc------cccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCE
Confidence 45666665 344432 122 3788888888875 443332 3577888888888862 2 356788888888
Q ss_pred EEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeec
Q 007138 98 FEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTIT 177 (616)
Q Consensus 98 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 177 (616)
|++++|....++. ..+++|+.|.+.+...... ..+..++.+++|++|+++
T Consensus 74 L~Ls~N~l~~lp~---------------------------~~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~ 123 (520)
T 2z7x_B 74 LDLSHNKLVKISC---------------------------HPTVNLKHLDLSFNAFDAL---PICKEFGNMSQLKFLGLS 123 (520)
T ss_dssp EECCSSCCCEEEC---------------------------CCCCCCSEEECCSSCCSSC---CCCGGGGGCTTCCEEEEE
T ss_pred EecCCCceeecCc---------------------------cccCCccEEeccCCccccc---cchhhhccCCcceEEEec
Confidence 8888887665432 1467777777776654332 234567888899999988
Q ss_pred cCCCccccchhhhhhHHhhhhhccCCC--cEEEccCCCC--CcccccccCCCC-CccEEEEcCCCCCCCCCC--CCCCCC
Q 007138 178 SCPKLQSLVAEEEKDQQQQLCELSCRL--EYLRLSNCEG--LVKLPQSSLSLS-SLREIEICKCSSLVSFPE--VALPSK 250 (616)
Q Consensus 178 ~~~~l~~l~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~--~~~~~~ 250 (616)
++. ++. ..+..+ ++| ++|++++|.. ....|..+..+. +..++++++|.....++. ...+++
T Consensus 124 ~n~-l~~-------~~~~~l----~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 191 (520)
T 2z7x_B 124 TTH-LEK-------SSVLPI----AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191 (520)
T ss_dssp ESS-CCG-------GGGGGG----TTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred Ccc-cch-------hhcccc----ccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccc
Confidence 865 333 124445 666 8999988876 556666666655 233455566654444442 334777
Q ss_pred CcEEEccCCCC-------ccccchhhccCCCCCccEEEeccCCCCcc-----ccccCCCCCccEEEEecCCCCCcccccc
Q 007138 251 LKNIWISTCDA-------LKSLPEAWMCDTNSSLEILSIHGCRSLTY-----IAAVQLPPSLKQLSISDCDNIRTLTVEE 318 (616)
Q Consensus 251 L~~L~l~~~~~-------l~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 318 (616)
|+.+++++|.. ...++.. ..+++|+.|+++++. +.. +......++|+.|++++|.-...+ +.
T Consensus 192 L~~L~l~~n~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--p~ 265 (520)
T 2z7x_B 192 LELSNIKCVLEDNKCSYFLSILAKL---QTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQL--DF 265 (520)
T ss_dssp EEECCEEECCSTTTTHHHHHHHHGG---GGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCC--CC
T ss_pred eeeccccccccccccceeecchhhh---ccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCcc--cc
Confidence 88888877641 1112211 345677777776543 111 111112347777777777322233 33
Q ss_pred cccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccc
Q 007138 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER 398 (616)
Q Consensus 319 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (616)
.+.......+++|+.++++++.- . +|...+...+.. .+++.|++++|..... + ....+++|+.|++++
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~--~-~p~~~~~~~~~~-------~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVF--G-FPQSYIYEIFSN-------MNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSN 333 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCC--C-SCTHHHHHHHHT-------CCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCS
T ss_pred chhhcccccCceeEeccccccce--e-cchhhhhccccc-------CceeEEEcCCCccccc-c-chhhCCcccEEEeEC
Confidence 33111112256677777766332 1 111111111111 3577777777754321 1 124667777777777
Q ss_pred ccccccccccccCCCCCcEEEeccCCCCc--ccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCCh
Q 007138 399 CGNLKILPSGLHNLRQLQGIKIWNCGNLV--SFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNM 476 (616)
Q Consensus 399 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 476 (616)
|...+.+|..+..+++|+.|++++|.... .+|.....+++|++|++++ +.+++.+|.. .+..+++|+.|++++|.
T Consensus 334 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~--~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKG--DCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGC--SCCCCTTCCEEECCSSC
T ss_pred CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC-CcCCcccccc--hhccCccCCEEECcCCC
Confidence 76555566677777777777777773322 2333334455777777777 4565533321 35566777777777775
Q ss_pred HHHHHhhhcCcccccc-CCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccEE
Q 007138 477 EIWKSMIERGRGFHRF-SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTEL 554 (616)
Q Consensus 477 ~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L 554 (616)
... .....+ ++|+.|++++| .++.+|.... .+++|++|++++| .++.+|.. +..+++|++|
T Consensus 411 l~~-------~~~~~l~~~L~~L~Ls~N--~l~~ip~~~~-------~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 411 LTD-------TIFRCLPPRIKVLDLHSN--KIKSIPKQVV-------KLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCG-------GGGGSCCTTCCEEECCSS--CCCCCCGGGG-------GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCc-------chhhhhcccCCEEECCCC--cccccchhhh-------cCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 321 011223 68999999997 7778887653 6899999999995 68889875 8889999999
Q ss_pred EecCCC
Q 007138 555 VLVNCP 560 (616)
Q Consensus 555 ~l~~c~ 560 (616)
++++++
T Consensus 474 ~l~~N~ 479 (520)
T 2z7x_B 474 WLHTNP 479 (520)
T ss_dssp ECCSSC
T ss_pred ECcCCC
Confidence 999953
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1e-23 Score=231.76 Aligned_cols=479 Identities=17% Similarity=0.163 Sum_probs=296.8
Q ss_pred CcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC-C---CCCCccEEeecCCc--chh-hhhcCCCC
Q 007138 22 CLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP-E---HLPALEMLVIEGCE--ELL-VSVASLPA 94 (616)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p-~---~~~~L~~L~l~~c~--~l~-~~~~~~~~ 94 (616)
++++|++++. .++++.+... ..+++|++|++++|. ++ .+| . .+++|++|+|++|. .++ ..+..+++
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f----~~l~~L~~L~Ls~N~-i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSF----FSFPELQVLDLSRCE-IQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTT----TTCTTCCEEECTTCC-CC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCC-CCCCCCHHHH----hCCCCCCEEECCCCc-CC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 6888888885 5666654333 678889999998885 55 343 2 46788899998886 233 45778888
Q ss_pred ccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEE
Q 007138 95 LCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRL 174 (616)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 174 (616)
|++|++++|....++... -..+++|+.|.+.+...... ..+..+..+++|++|
T Consensus 126 L~~L~Ls~N~l~~l~~~~------------------------~~~L~~L~~L~Ls~N~l~~~---~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFP------------------------IGHLKTLKELNVAHNLIQSF---KLPEYFSNLTNLEHL 178 (635)
T ss_dssp CCEEECTTSCCCCSTTCC------------------------CTTCTTCCEEECCSSCCCCC---CCCGGGGGCTTCCEE
T ss_pred CCEEECCCCcCCCCChhh------------------------hhcCcccCeeccccCccccC---CCchhhccchhhhhh
Confidence 999999888765543210 13466777777766543322 345667889999999
Q ss_pred eeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCc
Q 007138 175 TITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLK 252 (616)
Q Consensus 175 ~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~ 252 (616)
+++++. ++.+... .+..+.........++++.+.. +.++........++.+++.++.....+. ....+..++
T Consensus 179 ~L~~N~-l~~~~~~----~l~~L~~l~~~~~~~~ls~n~l-~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~ 252 (635)
T 4g8a_A 179 DLSSNK-IQSIYCT----DLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 252 (635)
T ss_dssp ECCSSC-CCEECGG----GGHHHHTCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred cccCcc-ccccccc----cccchhhhhhhhhhhhcccCcc-cccCcccccchhhhhhhhhcccccccccchhhcCCcccc
Confidence 999865 6655443 3455544445566788888765 5555555555566777776653211111 111233333
Q ss_pred EEEccCCC-----Cccccchh-h-------------------------ccCCCCCccEEEeccCCCCccccccCCCCCcc
Q 007138 253 NIWISTCD-----ALKSLPEA-W-------------------------MCDTNSSLEILSIHGCRSLTYIAAVQLPPSLK 301 (616)
Q Consensus 253 ~L~l~~~~-----~l~~~~~~-~-------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~ 301 (616)
...+.... .+...... + ......+++.+.+.++. +..+.......+++
T Consensus 253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~L~ 331 (635)
T 4g8a_A 253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFSYNFGWQ 331 (635)
T ss_dssp EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGGSCCCCS
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccccchhhh
Confidence 33322110 00000000 0 00111334444444332 22222233444566
Q ss_pred EEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch--
Q 007138 302 QLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE-- 379 (616)
Q Consensus 302 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~-- 379 (616)
.|++.++. +..+ +. ..+..|+.+.+.... ...... ...+ ++|+.++++.+....
T Consensus 332 ~L~l~~~~-~~~~--~~-------~~l~~L~~l~l~~n~-~~~~~~-------~~~l------~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 332 HLELVNCK-FGQF--PT-------LKLKSLKRLTFTSNK-GGNAFS-------EVDL------PSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp EEEEESCE-ESSC--CC-------CBCTTCCEEEEESCC-SCCBCC-------CCBC------TTCCEEECCSSCCBEEE
T ss_pred hhhccccc-ccCc--Cc-------ccchhhhhccccccc-CCCCcc-------cccc------cccccchhhcccccccc
Confidence 66666652 2222 11 113456666665522 111011 1111 788999998876542
Q ss_pred hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhhH
Q 007138 380 SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYM 458 (616)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~ 458 (616)
..+.......+|+.+++..+.. ..++..+..+++|+.+++..+......+.. ...+++++.++++. +.+.+..+.
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~-~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~-n~l~~~~~~-- 463 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNG-- 463 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSE-EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTT-SCCEECCTT--
T ss_pred ccccchhhhhhhhhhhcccccc-ccccccccccccccchhhhhccccccccccccccccccccccccc-ccccccccc--
Confidence 2344556677899999988664 345556778899999999887544444332 23456899999988 566666554
Q ss_pred hhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccc
Q 007138 459 IALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNL 538 (616)
Q Consensus 459 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 538 (616)
.+..+++|+.|++++|.... ...+..+..+++|+.|++++| .++.++... +..+++|++|++++ +.+
T Consensus 464 -~~~~~~~L~~L~Ls~N~~~~---~~~~~~~~~l~~L~~L~Ls~N--~L~~l~~~~------f~~l~~L~~L~Ls~-N~l 530 (635)
T 4g8a_A 464 -IFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQC--QLEQLSPTA------FNSLSSLQVLNMSH-NNF 530 (635)
T ss_dssp -TTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTS--CCCEECTTT------TTTCTTCCEEECTT-SCC
T ss_pred -ccccchhhhhhhhhhccccc---ccCchhhhhccccCEEECCCC--ccCCcChHH------HcCCCCCCEEECCC-CcC
Confidence 56778899999999885221 233456888999999999997 677665432 34689999999999 568
Q ss_pred ccccc-ccccCccccEEEecCCCCCcccCCCCC---cCCcceEEEcCCc
Q 007138 539 ERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL---PSSLLQLQIYCCP 583 (616)
Q Consensus 539 ~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~ 583 (616)
+.++. .+..+++|++|++++ +++..+++..+ +++|++|+++++|
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 87765 678899999999999 88888877543 4689999999865
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=9.3e-26 Score=243.83 Aligned_cols=457 Identities=15% Similarity=0.103 Sum_probs=266.4
Q ss_pred CCCcceEeeccCCCcccccCCC-CCCccEEeecCCc--chh-hhhcCCCCccEEEeCCCcceeecccccccCCCCceeec
Q 007138 49 FPKLRELHIISCSKLQGTFPEH-LPALEMLVIEGCE--ELL-VSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCR 124 (616)
Q Consensus 49 ~~~L~~L~l~~c~~l~~~~p~~-~~~L~~L~l~~c~--~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 124 (616)
+...++++++++. ++ .+|.. .++|++|++++|. .+. ..+..+++|++|++++|.........
T Consensus 30 ~~~~~~l~ls~~~-L~-~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------ 95 (562)
T 3a79_B 30 NELESMVDYSNRN-LT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV------------ 95 (562)
T ss_dssp ---CCEEECTTSC-CC-SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT------------
T ss_pred cCCCcEEEcCCCC-Cc-cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH------------
Confidence 5555888888874 65 56653 4678888888886 222 46788888888888888765532110
Q ss_pred CCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCC
Q 007138 125 DTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRL 204 (616)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L 204 (616)
-..+++|+.|.+.+..-.. ++.. .+++|++|+++++. ++.++.. ..+..+ ++|
T Consensus 96 ------------~~~l~~L~~L~Ls~N~l~~----lp~~---~l~~L~~L~Ls~N~-l~~l~~p---~~~~~l----~~L 148 (562)
T 3a79_B 96 ------------FLFNQDLEYLDVSHNRLQN----ISCC---PMASLRHLDLSFND-FDVLPVC---KEFGNL----TKL 148 (562)
T ss_dssp ------------TTTCTTCCEEECTTSCCCE----ECSC---CCTTCSEEECCSSC-CSBCCCC---GGGGGC----TTC
T ss_pred ------------hCCCCCCCEEECCCCcCCc----cCcc---ccccCCEEECCCCC-ccccCch---Hhhccc----Ccc
Confidence 0234555555555443321 2222 56777777777654 4443211 124444 677
Q ss_pred cEEEccCCCCCcccccccCCCCCc--cEEEEcCCCC--CCCCCC-CCCCC-CCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 205 EYLRLSNCEGLVKLPQSSLSLSSL--REIEICKCSS--LVSFPE-VALPS-KLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--l~~~~~-~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|++++|.... ..++.+++| ++|++++|.. ....+. +..+. ..-.++++++.....++.. ....+++|+
T Consensus 149 ~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~-~~~~l~~L~ 224 (562)
T 3a79_B 149 TFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM-SVNALGHLQ 224 (562)
T ss_dssp CEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEE-EESSEEEEE
T ss_pred cEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhh-cccccceEE
Confidence 777777765432 123334444 7777776643 122221 11111 0113344444433322221 113446677
Q ss_pred EEEeccCCC-Ccc----ccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcc
Q 007138 279 ILSIHGCRS-LTY----IAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPA 353 (616)
Q Consensus 279 ~L~l~~~~~-l~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 353 (616)
.++++++.. ... ++.....++++.+++.++. +..-.+.. .. .....++|++|+++++. ++...|...+..
T Consensus 225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~-~~--~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~ 299 (562)
T 3a79_B 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE-TTWKCSVK-LF--QFFWPRPVEYLNIYNLT-ITERIDREEFTY 299 (562)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE-ECHHHHHH-HH--HHHTTSSEEEEEEEEEE-ECSCCCCCCCCC
T ss_pred EecccccccccchHHHHHHHHhccCcceEEEecCCc-CcHHHHHH-HH--HhhhcccccEEEEeccE-eeccccchhhhc
Confidence 777765421 000 1111334567777766652 22110000 00 00113478899888853 221122222111
Q ss_pred cccccccCCCCCcccEEEecCCCCchhhhh-h---ccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc
Q 007138 354 TLESLEVGNLPPSLKSLYVYGCSKLESIAE-R---LDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF 429 (616)
Q Consensus 354 ~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~ 429 (616)
....+ ..|+.+++..+.. .+|. . .....+|+.|++++|.... ++ ....+++|++|++++|.....+
T Consensus 300 ~~~~L------~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~~~~l~~L~~L~l~~n~l~~~~ 369 (562)
T 3a79_B 300 SETAL------KSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH-MV-CPPSPSSFTFLNFTQNVFTDSV 369 (562)
T ss_dssp CSCSC------CEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-CCSSCCCCCEEECCSSCCCTTT
T ss_pred ccccc------hheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc-cc-CccCCCCceEEECCCCccccch
Confidence 11222 5555556655543 2331 1 1122579999999986432 21 1268899999999999655556
Q ss_pred CCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc
Q 007138 430 PEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS 509 (616)
Q Consensus 430 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~ 509 (616)
|.....+++|++|++++ +.+++. +.....+.++++|+.|++++|.... ......+..+++|++|++++| .++.
T Consensus 370 ~~~~~~l~~L~~L~L~~-N~l~~~-~~~~~~~~~l~~L~~L~l~~N~l~~---~~~~~~~~~l~~L~~L~l~~n--~l~~ 442 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQR-NGLKNF-FKVALMTKNMSSLETLDVSLNSLNS---HAYDRTCAWAESILVLNLSSN--MLTG 442 (562)
T ss_dssp TTTCCSCSSCCEEECCS-SCCCBT-THHHHTTTTCTTCCEEECTTSCCBS---CCSSCCCCCCTTCCEEECCSS--CCCG
T ss_pred hhhhcccCCCCEEECCC-CCcCCc-ccchhhhcCCCCCCEEECCCCcCCC---ccChhhhcCcccCCEEECCCC--CCCc
Confidence 66667778999999999 567663 2223467899999999999986321 122234678899999999997 4432
Q ss_pred -ccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC--CCcCCcceEEEcCCc
Q 007138 510 -FPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK--GLPSSLLQLQIYCCP 583 (616)
Q Consensus 510 -l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 583 (616)
++.. ..++|+.|++++| .++.+|..+..+++|++|++++ ++++.+|.. ..+++|++|+++++|
T Consensus 443 ~~~~~---------l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 443 SVFRC---------LPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp GGGSS---------CCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred chhhh---------hcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 2221 1379999999995 7899998777999999999999 789999985 347899999999876
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=1.4e-25 Score=234.40 Aligned_cols=416 Identities=21% Similarity=0.215 Sum_probs=213.3
Q ss_pred cCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccCCCCCC---ccEEeecCCcchhhhhcCCCCc
Q 007138 19 PFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFPEHLPA---LEMLVIEGCEELLVSVASLPAL 95 (616)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~---L~~L~l~~c~~l~~~~~~~~~L 95 (616)
+..+|++|.+.+. .+.+ ++.. ++.+++|++|++++|. +.+.+|..+.+ |+.+++.+|.. ..+
T Consensus 9 ~~~~L~~L~l~~n-~l~~-iP~~----i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~--------~~l 73 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTE-MPVE----AENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLD--------RQA 73 (454)
T ss_dssp -------------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHH--------HTC
T ss_pred ccccchhhhcccC-chhh-CChh----HhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhc--------cCC
Confidence 4678899998886 4543 3423 3889999999999985 66678875544 44555666632 567
Q ss_pred cEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEe
Q 007138 96 CKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLT 175 (616)
Q Consensus 96 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 175 (616)
++|++++|....++ ...++|+.|.+.+..... .+ ...++|++|+
T Consensus 74 ~~L~l~~~~l~~lp----------------------------~~~~~L~~L~l~~n~l~~----lp----~~~~~L~~L~ 117 (454)
T 1jl5_A 74 HELELNNLGLSSLP----------------------------ELPPHLESLVASCNSLTE----LP----ELPQSLKSLL 117 (454)
T ss_dssp SEEECTTSCCSCCC----------------------------SCCTTCSEEECCSSCCSS----CC----CCCTTCCEEE
T ss_pred CEEEecCCccccCC----------------------------CCcCCCCEEEccCCcCCc----cc----cccCCCcEEE
Confidence 88888888754433 223677888776654332 12 2347899999
Q ss_pred eccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEE
Q 007138 176 ITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIW 255 (616)
Q Consensus 176 l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~ 255 (616)
++++. ++.++. .+++|++|++++|.. +.+| .++.+++|++|++++| .++.+|.. ..+|++|+
T Consensus 118 l~~n~-l~~l~~------------~~~~L~~L~L~~n~l-~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~ 179 (454)
T 1jl5_A 118 VDNNN-LKALSD------------LPPLLEYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIA 179 (454)
T ss_dssp CCSSC-CSCCCS------------CCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEE
T ss_pred CCCCc-cCcccC------------CCCCCCEEECcCCCC-CCCc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEE
Confidence 98864 444332 226899999999876 5677 5888999999999988 46667643 46899999
Q ss_pred ccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEe
Q 007138 256 ISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLD 335 (616)
Q Consensus 256 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~ 335 (616)
+++|. ++.++.. ..+++|++|+++++. +..++. .+++|+.|++++| .++.+ +. +.. +++|++|+
T Consensus 180 L~~n~-l~~l~~~---~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~n-~l~~l--p~-~~~-----l~~L~~L~ 243 (454)
T 1jl5_A 180 AGNNQ-LEELPEL---QNLPFLTAIYADNNS-LKKLPD--LPLSLESIVAGNN-ILEEL--PE-LQN-----LPFLTTIY 243 (454)
T ss_dssp CCSSC-CSSCCCC---TTCTTCCEEECCSSC-CSSCCC--CCTTCCEEECCSS-CCSSC--CC-CTT-----CTTCCEEE
T ss_pred CcCCc-CCcCccc---cCCCCCCEEECCCCc-CCcCCC--CcCcccEEECcCC-cCCcc--cc-cCC-----CCCCCEEE
Confidence 99886 5666643 667889999988764 554442 3458888888887 45554 43 333 67788888
Q ss_pred ccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCC
Q 007138 336 ISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL 415 (616)
Q Consensus 336 l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L 415 (616)
++++ .++. +|... ++|++|++++|...+ +|.. +++|+.|++++|. ++.++. ..++|
T Consensus 244 l~~N-~l~~------l~~~~---------~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~-l~~l~~---~~~~L 299 (454)
T 1jl5_A 244 ADNN-LLKT------LPDLP---------PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENI-FSGLSE---LPPNL 299 (454)
T ss_dssp CCSS-CCSS------CCSCC---------TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC-CSEESC---CCTTC
T ss_pred CCCC-cCCc------ccccc---------cccCEEECCCCcccc-cCcc---cCcCCEEECcCCc-cCcccC---cCCcC
Confidence 8873 3332 11111 677788887775433 4432 3577888887765 333332 12577
Q ss_pred cEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCc
Q 007138 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495 (616)
Q Consensus 416 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 495 (616)
+.|++++| .+..++.. . ++|++|++++ +.+++. |. .+++|+.|++++|.... .+. .+++|
T Consensus 300 ~~L~l~~N-~l~~i~~~-~--~~L~~L~Ls~-N~l~~l-p~------~~~~L~~L~L~~N~l~~-----lp~---~l~~L 359 (454)
T 1jl5_A 300 YYLNASSN-EIRSLCDL-P--PSLEELNVSN-NKLIEL-PA------LPPRLERLIASFNHLAE-----VPE---LPQNL 359 (454)
T ss_dssp CEEECCSS-CCSEECCC-C--TTCCEEECCS-SCCSCC-CC------CCTTCCEEECCSSCCSC-----CCC---CCTTC
T ss_pred CEEECcCC-cCCcccCC-c--CcCCEEECCC-Cccccc-cc------cCCcCCEEECCCCcccc-----ccc---hhhhc
Confidence 77777776 44444421 1 2677777777 455542 21 13455555555553210 000 24556
Q ss_pred cEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCCcCCcc
Q 007138 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGLPSSLL 575 (616)
Q Consensus 496 ~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~ 575 (616)
++|++++| .+..++. .+..+..|.. +.....+|. .+++|++|++++ +.++.++. .+++++
T Consensus 360 ~~L~L~~N--~l~~l~~----------ip~~l~~L~~--n~~~~~i~~---~~~~L~~L~ls~-N~l~~~~~--iP~sl~ 419 (454)
T 1jl5_A 360 KQLHVEYN--PLREFPD----------IPESVEDLRM--NSHLAEVPE---LPQNLKQLHVET-NPLREFPD--IPESVE 419 (454)
T ss_dssp CEEECCSS--CCSSCCC----------CCTTCCEEEC--CC---------------------------------------
T ss_pred cEEECCCC--CCCcCCC----------ChHHHHhhhh--ccccccccc---ccCcCCEEECCC-CcCCcccc--chhhHh
Confidence 66666554 3333322 1222333322 223333442 238899999999 67776544 566788
Q ss_pred eEEEcCCc
Q 007138 576 QLQIYCCP 583 (616)
Q Consensus 576 ~L~i~~c~ 583 (616)
.|.+.+|.
T Consensus 420 ~L~~~~~~ 427 (454)
T 1jl5_A 420 DLRMNSER 427 (454)
T ss_dssp --------
T ss_pred heeCcCcc
Confidence 88888764
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.5e-24 Score=225.01 Aligned_cols=348 Identities=16% Similarity=0.188 Sum_probs=252.8
Q ss_pred CCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccc
Q 007138 140 IPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLP 219 (616)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 219 (616)
+++++.|.+.++..... + .+..+++|++|++++|. ++.+++ +..+ ++|++|++++|.. ..++
T Consensus 45 l~~l~~L~l~~~~i~~l----~--~~~~l~~L~~L~Ls~n~-l~~~~~------~~~l----~~L~~L~l~~n~l-~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI----D--GVEYLNNLTQINFSNNQ-LTDITP------LKNL----TKLVDILMNNNQI-ADIT 106 (466)
T ss_dssp HHTCCEEECCSSCCCCC----T--TGGGCTTCCEEECCSSC-CCCCGG------GTTC----TTCCEEECCSSCC-CCCG
T ss_pred hccccEEecCCCCCccC----c--chhhhcCCCEEECCCCc-cCCchh------hhcc----ccCCEEECCCCcc-ccCh
Confidence 56888888877654332 2 26789999999999875 555432 4445 8999999999876 5555
Q ss_pred cccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCC
Q 007138 220 QSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPS 299 (616)
Q Consensus 220 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 299 (616)
. ++.+++|++|++++| .++.++.+..+++|++|++++|. +..++.. ..+++|++|++++ .+..+.....+++
T Consensus 107 ~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~l~~L~~L~l~~--~~~~~~~~~~l~~ 178 (466)
T 1o6v_A 107 P-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNT-ISDISAL---SGLTSLQQLSFGN--QVTDLKPLANLTT 178 (466)
T ss_dssp G-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEEEEEEE-ECCCGGG---TTCTTCSEEEEEE--SCCCCGGGTTCTT
T ss_pred h-hcCCCCCCEEECCCC-CCCCChHHcCCCCCCEEECCCCc-cCCChhh---ccCCcccEeecCC--cccCchhhccCCC
Confidence 5 889999999999998 57777777789999999999886 6666543 6778999999874 3445555677789
Q ss_pred ccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch
Q 007138 300 LKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE 379 (616)
Q Consensus 300 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 379 (616)
|+.|+++++. ++.+ +. +. .+++|++|+++++. +..+.+ +..+ ++|+.|++++|...+
T Consensus 179 L~~L~l~~n~-l~~~--~~-l~-----~l~~L~~L~l~~n~-l~~~~~-------~~~l------~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 179 LERLDISSNK-VSDI--SV-LA-----KLTNLESLIATNNQ-ISDITP-------LGIL------TNLDELSLNGNQLKD 235 (466)
T ss_dssp CCEEECCSSC-CCCC--GG-GG-----GCTTCSEEECCSSC-CCCCGG-------GGGC------TTCCEEECCSSCCCC
T ss_pred CCEEECcCCc-CCCC--hh-hc-----cCCCCCEEEecCCc-cccccc-------cccc------CCCCEEECCCCCccc
Confidence 9999999884 5554 22 22 37889999999853 443222 2222 889999999886543
Q ss_pred hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHh
Q 007138 380 SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMI 459 (616)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 459 (616)
++ .+..+++|+.|++++|... .++. +..+++|+.|++++| .+..++. ...+++|++|++++| .+++..+
T Consensus 236 -~~-~l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~---- 304 (466)
T 1o6v_A 236 -IG-TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDISP---- 304 (466)
T ss_dssp -CG-GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCSCCGG----
T ss_pred -ch-hhhcCCCCCEEECCCCccc-cchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCC-cccCchh----
Confidence 33 4677889999999998744 3433 788899999999988 4444544 445568999999985 5666533
Q ss_pred hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 460 ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 460 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
+..+++|+.|++++|.... ...+..+++|+.|++++| .+..++... .+++|+.|++++|+ +.
T Consensus 305 -~~~l~~L~~L~L~~n~l~~------~~~~~~l~~L~~L~l~~n--~l~~~~~l~--------~l~~L~~L~l~~n~-l~ 366 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFNNISD------ISPVSSLTKLQRLFFYNN--KVSDVSSLA--------NLTNINWLSAGHNQ-IS 366 (466)
T ss_dssp -GGGCTTCSEEECCSSCCSC------CGGGGGCTTCCEEECCSS--CCCCCGGGT--------TCTTCCEEECCSSC-CC
T ss_pred -hcCCCCCCEEECcCCcCCC------chhhccCccCCEeECCCC--ccCCchhhc--------cCCCCCEEeCCCCc-cC
Confidence 6788899999999886321 123678899999999986 666664332 68899999999864 55
Q ss_pred ccccccccCccccEEEecCCCCCcccCC
Q 007138 540 RLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 540 ~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+++ +..+++|+.|++++ +.+..+|.
T Consensus 367 ~~~~-~~~l~~L~~L~l~~-n~~~~~p~ 392 (466)
T 1o6v_A 367 DLTP-LANLTRITQLGLND-QAWTNAPV 392 (466)
T ss_dssp BCGG-GTTCTTCCEEECCC-EEEECCCB
T ss_pred ccch-hhcCCCCCEEeccC-CcccCCch
Confidence 5553 78899999999998 55666554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.1e-24 Score=225.27 Aligned_cols=345 Identities=19% Similarity=0.194 Sum_probs=264.3
Q ss_pred hcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCC
Q 007138 166 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV 245 (616)
Q Consensus 166 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 245 (616)
..+++++.|++.++. ++.++. +..+ ++|++|++++|.. +.++. ++.+++|++|++++| .+..++.+
T Consensus 43 ~~l~~l~~L~l~~~~-i~~l~~------~~~l----~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~ 108 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG-IKSIDG------VEYL----NNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNN-QIADITPL 108 (466)
T ss_dssp HHHHTCCEEECCSSC-CCCCTT------GGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hHhccccEEecCCCC-CccCcc------hhhh----cCCCEEECCCCcc-CCchh-hhccccCCEEECCCC-ccccChhh
Confidence 346789999998875 555432 4444 8999999999876 66666 899999999999998 46777667
Q ss_pred CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccccccccc
Q 007138 246 ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 325 (616)
..+++|++|++++|. +..++.. ..+++|++|+++++. +..++....+++|+.|++.+. +..+ +. +.
T Consensus 109 ~~l~~L~~L~L~~n~-l~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~--~~-~~---- 174 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQ-ITDIDPL---KNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDL--KP-LA---- 174 (466)
T ss_dssp TTCTTCCEEECCSSC-CCCCGGG---TTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCC--GG-GT----
T ss_pred cCCCCCCEEECCCCC-CCCChHH---cCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccCc--hh-hc----
Confidence 889999999999986 6666653 778999999999874 556666677889999999753 3333 22 33
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
.+++|++|+++++. ++.+ ..+..+ ++|++|++++|...+..+ +..+++|+.|++++|. ++.+
T Consensus 175 -~l~~L~~L~l~~n~-l~~~-------~~l~~l------~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~ 236 (466)
T 1o6v_A 175 -NLTTLERLDISSNK-VSDI-------SVLAKL------TNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-LKDI 236 (466)
T ss_dssp -TCTTCCEEECCSSC-CCCC-------GGGGGC------TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC
T ss_pred -cCCCCCEEECcCCc-CCCC-------hhhccC------CCCCEEEecCCccccccc--ccccCCCCEEECCCCC-cccc
Confidence 37899999999954 4431 113333 899999999997665444 6678899999999986 4445
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+ .+..+++|+.|++++|. +..++. ...+++|++|++++| .+++..+ +..+++|+.|++++|....
T Consensus 237 ~-~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~L~~n~l~~------ 301 (466)
T 1o6v_A 237 G-TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISP-----LAGLTALTNLELNENQLED------ 301 (466)
T ss_dssp G-GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCCCCGG-----GTTCTTCSEEECCSSCCSC------
T ss_pred h-hhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCC-ccCcccc-----ccCCCccCeEEcCCCcccC------
Confidence 3 57889999999999984 444443 445669999999995 6766533 6789999999999986321
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCccc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
...+..+++|+.|++++| .+..++... .+++|+.|++++| .+..++ .+..+++|++|++++ +.+..+
T Consensus 302 ~~~~~~l~~L~~L~L~~n--~l~~~~~~~--------~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~-n~l~~~ 368 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFN--NISDISPVS--------SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGH-NQISDL 368 (466)
T ss_dssp CGGGGGCTTCSEEECCSS--CCSCCGGGG--------GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCS-SCCCBC
T ss_pred chhhcCCCCCCEEECcCC--cCCCchhhc--------cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCC-CccCcc
Confidence 223678999999999997 565555433 5899999999996 577775 788999999999999 566766
Q ss_pred CCCCCcCCcceEEEcCCch
Q 007138 566 PEKGLPSSLLQLQIYCCPL 584 (616)
Q Consensus 566 ~~~~~~~~L~~L~i~~c~~ 584 (616)
++...+++|++|++++|+.
T Consensus 369 ~~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TPLANLTRITQLGLNDQAW 387 (466)
T ss_dssp GGGTTCTTCCEEECCCEEE
T ss_pred chhhcCCCCCEEeccCCcc
Confidence 6655688999999998853
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=4.8e-24 Score=224.50 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred ccCCCCCCccEEeecCCcc--h-hhhhcCCCCccEEEeCCCccee-ecccccccCCCCceeecCCCcceeecCCCCCCCC
Q 007138 66 TFPEHLPALEMLVIEGCEE--L-LVSVASLPALCKFEIGGCKKVV-WRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIP 141 (616)
Q Consensus 66 ~~p~~~~~L~~L~l~~c~~--l-~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 141 (616)
.+|...++|++|+++++.. + +..+..+++|++|++++|.... ++.. .-..++
T Consensus 24 ~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~------------------------~~~~l~ 79 (455)
T 3v47_A 24 QVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN------------------------TFRGLS 79 (455)
T ss_dssp SCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT------------------------TTTTCT
T ss_pred cCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc------------------------cccccc
Confidence 5555335577777776652 1 3456677777777777775432 1100 002334
Q ss_pred CCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc-cchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 142 KLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS-LVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
+|+.|.+.+..... ..+..++.+++|++|++++|. ++. .+.. ..+..+ ++|++|++++|......|.
T Consensus 80 ~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~~~l----~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 80 SLIILKLDYNQFLQ----LETGAFNGLANLEVLTLTQCN-LDGAVLSG---NFFKPL----TSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp TCCEEECTTCTTCE----ECTTTTTTCTTCCEEECTTSC-CBTHHHHS---STTTTC----TTCCEEECCSSBCCSCCCC
T ss_pred cCCEEeCCCCccCc----cChhhccCcccCCEEeCCCCC-CCccccCc---ccccCc----ccCCEEECCCCccCccCcc
Confidence 44444444433221 233445566666666666654 222 1111 113333 5666666666655333343
Q ss_pred c-cCCCCCccEEEEcCCCCCCCCCC--CCC--CCCCcEEEccCCC
Q 007138 221 S-SLSLSSLREIEICKCSSLVSFPE--VAL--PSKLKNIWISTCD 260 (616)
Q Consensus 221 ~-~~~l~~L~~L~l~~~~~l~~~~~--~~~--~~~L~~L~l~~~~ 260 (616)
. ++.+++|++|++++|. ++.++. +.. ..+|+.++++++.
T Consensus 148 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp GGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred cccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCc
Confidence 3 5566666666666653 332221 111 2455555555554
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.3e-23 Score=225.10 Aligned_cols=455 Identities=13% Similarity=0.091 Sum_probs=273.8
Q ss_pred cCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccccC---CCCCCccEEeecCCcc--h-hhhhcCC
Q 007138 19 PFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGTFP---EHLPALEMLVIEGCEE--L-LVSVASL 92 (616)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p---~~~~~L~~L~l~~c~~--l-~~~~~~~ 92 (616)
.+...+++++.++ .+.++. . ..+++|++|++++|. +.+..| ..+++|++|++++|.- + +..+..+
T Consensus 29 ~~~~~~~l~ls~~-~L~~ip-~------~~~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNR-NLTHVP-K------DLPPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTS-CCCSCC-T------TSCTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCC-CCccCC-C------CCCCCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 3555688998887 566543 2 235899999999996 553333 3578999999999972 2 3568889
Q ss_pred CCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhcCCCcc
Q 007138 93 PALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQDICSLK 172 (616)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 172 (616)
++|++|++++|....++. ..+++|+.|.+.+...... ..+..++.+++|+
T Consensus 100 ~~L~~L~Ls~N~l~~lp~---------------------------~~l~~L~~L~Ls~N~l~~l---~~p~~~~~l~~L~ 149 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISC---------------------------CPMASLRHLDLSFNDFDVL---PVCKEFGNLTKLT 149 (562)
T ss_dssp TTCCEEECTTSCCCEECS---------------------------CCCTTCSEEECCSSCCSBC---CCCGGGGGCTTCC
T ss_pred CCCCEEECCCCcCCccCc---------------------------cccccCCEEECCCCCcccc---CchHhhcccCccc
Confidence 999999999998765442 1478888888887654432 2235679999999
Q ss_pred EEeeccCCCccccchhhhhhHHhhhhhccCCC--cEEEccCCCC--CcccccccCCCC--CccEEEEcCCCCCCCCC--C
Q 007138 173 RLTITSCPKLQSLVAEEEKDQQQQLCELSCRL--EYLRLSNCEG--LVKLPQSSLSLS--SLREIEICKCSSLVSFP--E 244 (616)
Q Consensus 173 ~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~~~~~~~~~l~--~L~~L~l~~~~~l~~~~--~ 244 (616)
+|+++++. ++.. .+..+ ++| ++|++++|.. ....|..+..+. .+ .+++++|.....++ .
T Consensus 150 ~L~L~~n~-l~~~-------~~~~l----~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~ 216 (562)
T 3a79_B 150 FLGLSAAK-FRQL-------DLLPV----AHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMS 216 (562)
T ss_dssp EEEEECSB-CCTT-------TTGGG----TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEE
T ss_pred EEecCCCc-cccC-------chhhh----hhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhc
Confidence 99999865 4331 24445 556 9999999877 555666665544 22 45666665444444 2
Q ss_pred CCCCCCCcEEEccCCCCc-cccchhh-ccCCCCCccEEEeccCCC----CccccccCCCCCccEEEEecCCCCCcccccc
Q 007138 245 VALPSKLKNIWISTCDAL-KSLPEAW-MCDTNSSLEILSIHGCRS----LTYIAAVQLPPSLKQLSISDCDNIRTLTVEE 318 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l-~~~~~~~-~~~~~~~L~~L~l~~~~~----l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 318 (616)
...+++|+.++++++... ..++... .....+.++.+++.++.. +..++.....++|+.|++++|.-...+ |.
T Consensus 217 ~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i--p~ 294 (562)
T 3a79_B 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI--DR 294 (562)
T ss_dssp ESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC--CC
T ss_pred ccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc--cc
Confidence 334778888888876411 1111100 003346666666665421 111111122347778887777422233 33
Q ss_pred cccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccc
Q 007138 319 GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIER 398 (616)
Q Consensus 319 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (616)
.+.......+..|+.+++.... + . +|...+...+.. .++++|++++|...... ....+++|+.|++++
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~-~-~-~p~~~~~~~~~~-------~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQV-F-L-FSKEALYSVFAE-------MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECC-C-S-SCHHHHHHHHHT-------CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCS
T ss_pred hhhhcccccchheehhhcccce-e-e-cChhhhhhhhcc-------CcceEEEccCCCccccc--CccCCCCceEEECCC
Confidence 3211000112333333333311 1 0 111101011111 45777777776543211 114566777777777
Q ss_pred ccccccccccccCCCCCcEEEeccCCCCcccC---CCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 399 CGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP---EGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 399 ~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
|...+.+|..+..+++|+.|++++| .+..++ .....+++|++|++++ +.+++.+|.. .+..+++|+.|++++|
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~--~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL-NSLNSHAYDR--TCAWAESILVLNLSSN 438 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT-SCCBSCCSSC--CCCCCTTCCEEECCSS
T ss_pred CccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC-CcCCCccChh--hhcCcccCCEEECCCC
Confidence 7655556666777777777777776 344332 2334455777777777 3555533321 3556677777777777
Q ss_pred hHHHHHhhhcCcccccc-CCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccE
Q 007138 476 MEIWKSMIERGRGFHRF-SSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTE 553 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~ 553 (616)
.... ..+..+ ++|+.|++++| .++.+|... ..+++|++|++++ +.++.+|.. +..+++|+.
T Consensus 439 ~l~~-------~~~~~l~~~L~~L~L~~N--~l~~ip~~~-------~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 439 MLTG-------SVFRCLPPKVKVLDLHNN--RIMSIPKDV-------THLQALQELNVAS-NQLKSVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCCG-------GGGSSCCTTCSEEECCSS--CCCCCCTTT-------TSSCCCSEEECCS-SCCCCCCTTSTTTCTTCCC
T ss_pred CCCc-------chhhhhcCcCCEEECCCC--cCcccChhh-------cCCCCCCEEECCC-CCCCCCCHHHHhcCCCCCE
Confidence 5321 123344 68999999997 777777755 2689999999999 568889875 888999999
Q ss_pred EEecCCC
Q 007138 554 LVLVNCP 560 (616)
Q Consensus 554 L~l~~c~ 560 (616)
|++++++
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9999954
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.1e-23 Score=220.26 Aligned_cols=227 Identities=16% Similarity=0.153 Sum_probs=125.9
Q ss_pred HhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC
Q 007138 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 244 (616)
Q Consensus 165 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 244 (616)
++.+++|++|+++++. ++.++ +..+ ++|++|++++|..++.+ .++.+++|++|++++| .++.++
T Consensus 123 ~~~l~~L~~L~l~~N~-l~~l~-------l~~l----~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~- 186 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNT-LTEID-------VSHN----TQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD- 186 (457)
T ss_dssp CTTCTTCCEEECTTSC-CSCCC-------CTTC----TTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCC-
T ss_pred CCCCCcCCEEECCCCc-cceec-------cccC----CcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceec-
Confidence 3555666666666543 33321 2222 56666666666544444 2555666666666665 355554
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccc
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSR 324 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 324 (616)
+..+++|+.|++++|. ++.++ . ..+++|+.|+++++. ++.++ ...+++|+.|+++++ .++.+ + ..
T Consensus 187 l~~l~~L~~L~l~~N~-l~~~~-l---~~l~~L~~L~Ls~N~-l~~ip-~~~l~~L~~L~l~~N-~l~~~--~--~~--- 251 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNN-ITKLD-L---NQNIQLTFLDCSSNK-LTEID-VTPLTQLTYFDCSVN-PLTEL--D--VS--- 251 (457)
T ss_dssp CTTCTTCCEEECCSSC-CSCCC-C---TTCTTCSEEECCSSC-CSCCC-CTTCTTCSEEECCSS-CCSCC--C--CT---
T ss_pred cccCCCCCEEECcCCc-CCeec-c---ccCCCCCEEECcCCc-ccccC-ccccCCCCEEEeeCC-cCCCc--C--HH---
Confidence 4456666666666654 33332 1 344566666666542 44443 344456666666665 34333 1 11
Q ss_pred cccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccc
Q 007138 325 RYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKI 404 (616)
Q Consensus 325 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 404 (616)
.+++|+.|++++ .+|+.|++++|...+.+| ...+++|+.|++++|..++.
T Consensus 252 --~l~~L~~L~l~~--------------------------n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 252 --TLSKLTTLHCIQ--------------------------TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp --TCTTCCEEECTT--------------------------CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred --HCCCCCEEeccC--------------------------CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 144566666554 556666677776666555 35566777777777776666
Q ss_pred ccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 405 LPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+|. ..++|+.|++++| ++|++|++++ +++++. .++++++|+.|++++|
T Consensus 302 l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~-N~l~~l------~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 302 LDC---QAAGITELDLSQN-------------PKLVYLYLNN-TELTEL------DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEC---TTCCCSCCCCTTC-------------TTCCEEECTT-CCCSCC------CCTTCTTCSEEECCSS
T ss_pred ecc---CCCcceEechhhc-------------ccCCEEECCC-Cccccc------ccccCCcCcEEECCCC
Confidence 653 3445555555544 2677777777 456553 2455666666666655
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.1e-23 Score=219.59 Aligned_cols=361 Identities=18% Similarity=0.201 Sum_probs=194.9
Q ss_pred CCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc-ccccCCCCCccEEEEcCCCCCCCC-C-CC
Q 007138 169 CSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL-PQSSLSLSSLREIEICKCSSLVSF-P-EV 245 (616)
Q Consensus 169 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~-~~ 245 (616)
++|++|+++++. ++.+.+. .+..+ ++|++|++++|.....+ +..+..+++|++|++++|. ++.+ | .+
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~ 99 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNET----SFSRL----QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF 99 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT----TTSSC----TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT
T ss_pred CccCEEEecCCc-cCcCChh----HhccC----ccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc
Confidence 788888888865 5554332 25555 78888888888765455 4467888888888888875 4443 3 45
Q ss_pred CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccc-cc--cCCCCCccEEEEecCCCCCcccccccccc
Q 007138 246 ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYI-AA--VQLPPSLKQLSISDCDNIRTLTVEEGIQS 322 (616)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 322 (616)
..+++|++|++++|.....++.......+++|++|+++++. +..+ +. ...+++|+.|+++++. ++.+. +..+..
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~l~~ 176 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK-VKSIC-EEDLLN 176 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC-BSCCC-TTTSGG
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc-ccccC-hhhhhc
Confidence 56888888888888633222322111456778888888764 3333 22 2455677777777763 33321 111111
Q ss_pred cccccCCCccEEeccCCCCcccccccCCCc----ccccccccCCCCCcccEEEecCCCCchhhhhhccC---CCCccEEE
Q 007138 323 SRRYTSCLLEHLDISSCPSLTCIFSKNELP----ATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDN---NTSLETIS 395 (616)
Q Consensus 323 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~----~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~ 395 (616)
....+++.|+++++. +.. .+...+. ..+..+ ++|++|++++|...+..+..+.. .++|+.|+
T Consensus 177 ---l~~~~L~~L~l~~n~-l~~-~~~~~~~~~~~~~~~~~------~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 177 ---FQGKHFTLLRLSSIT-LQD-MNEYWLGWEKCGNPFKN------TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp ---GTTCEEEEEECTTCB-CTT-CSTTCTTHHHHCCTTTT------CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ---cccccccccccccCc-ccc-cchhhcccccccccccc------ceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 112456777776632 222 1111000 001111 56677777776665555544332 25667777
Q ss_pred cccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 396 IERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 396 l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+++|........ ...++.+ .........+++|+++++++ +.+++..|. .++++++|+.|++++|
T Consensus 246 l~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~---~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 246 LSNSYNMGSSFG-HTNFKDP-----------DNFTFKGLEASGVKTCDLSK-SKIFALLKS---VFSHFTDLEQLTLAQN 309 (455)
T ss_dssp CTTCTTTSCCTT-CCSSCCC-----------CTTTTGGGTTSCCCEEECCS-SCCCEECTT---TTTTCTTCCEEECTTS
T ss_pred eccccccccccc-hhhhccC-----------cccccccccccCceEEEecC-ccccccchh---hcccCCCCCEEECCCC
Confidence 666543322100 0000000 00000001112455555555 234443332 3344455555555554
Q ss_pred hHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc-ccccccCccccEE
Q 007138 476 MEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDLQNLTEL 554 (616)
Q Consensus 476 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L 554 (616)
... ...+..+..+++|++|++++| .+..++... +..+++|++|++++| .+..+ |..+..+++|++|
T Consensus 310 ~l~----~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 310 EIN----KIDDNAFWGLTHLLKLNLSQN--FLGSIDSRM------FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp CCC----EECTTTTTTCTTCCEEECCSS--CCCEECGGG------GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred ccc----ccChhHhcCcccCCEEECCCC--ccCCcChhH------hcCcccCCEEECCCC-cccccChhhccccccccEE
Confidence 321 111224566777777777775 444443321 225677888888774 45554 4467777888888
Q ss_pred EecCCCCCcccCCCC--CcCCcceEEEcCCc
Q 007138 555 VLVNCPKLKYFPEKG--LPSSLLQLQIYCCP 583 (616)
Q Consensus 555 ~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 583 (616)
++++ ++++.++... .+++|++|++++++
T Consensus 377 ~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 377 ALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp ECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 8887 6777777643 36778888887654
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=4.2e-23 Score=209.04 Aligned_cols=304 Identities=15% Similarity=0.184 Sum_probs=146.3
Q ss_pred hcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCC
Q 007138 166 QDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEV 245 (616)
Q Consensus 166 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 245 (616)
..+++|++|+++++. +..++. +..+ ++|++|++++|.. +.++. +..+++|++|++++| .++.++.+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~~------~~~~----~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~ 106 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQG------IEYL----TNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTN-KITDISAL 106 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCTT------GGGC----TTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCCGGG
T ss_pred hhcccccEEEEeCCc-cccchh------hhhc----CCccEEEccCCcc-ccchh-hhcCCcCCEEEccCC-cccCchHH
Confidence 455666666666543 333211 2233 5666666666543 44443 555666666666665 34555545
Q ss_pred CCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccccccccc
Q 007138 246 ALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRR 325 (616)
Q Consensus 246 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 325 (616)
..+++|++|++++|. +..++.. ..+++|+.|++++|.....++....++
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~l~--------------------------- 155 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMT--------------------------- 155 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGG---TTCTTCCEEECTTCTTCCCCGGGTTCT---------------------------
T ss_pred cCCCcCCEEECcCCc-ccCchhh---ccCCceeEEECCCCCCcccccchhhCC---------------------------
Confidence 555666666665554 3333331 344455555555444333333333333
Q ss_pred ccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccc
Q 007138 326 YTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKIL 405 (616)
Q Consensus 326 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 405 (616)
+|++|+++++. +..+.+ +..+ ++|++|++++|...+ ++. +..+++|+.+++++|.. ..+
T Consensus 156 ----~L~~L~l~~~~-~~~~~~-------~~~l------~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l-~~~ 214 (347)
T 4fmz_A 156 ----GLNYLTVTESK-VKDVTP-------IANL------TDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQI-TDI 214 (347)
T ss_dssp ----TCCEEECCSSC-CCCCGG-------GGGC------TTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCC-CCC
T ss_pred ----CCcEEEecCCC-cCCchh-------hccC------CCCCEEEccCCcccc-ccc-ccCCCccceeecccCCC-CCC
Confidence 44444444422 111000 1111 445555555443222 222 34445555555555432 222
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+. +..+++|++|++++| .+..++. ...+++|++|++++| .+++.
T Consensus 215 ~~-~~~~~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~-------------------------------- 258 (347)
T 4fmz_A 215 TP-VANMTRLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDI-------------------------------- 258 (347)
T ss_dssp GG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCC--------------------------------
T ss_pred ch-hhcCCcCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCC-ccCCC--------------------------------
Confidence 21 445555555555555 2333332 223345555555553 33321
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCccc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYF 565 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l 565 (616)
..+..+++|+.|++++| .+..++... .+++|+.|++++|+-....+..+..+++|++|++++| .++.+
T Consensus 259 -~~~~~l~~L~~L~l~~n--~l~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~ 326 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSN--QISDISVLN--------NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDI 326 (347)
T ss_dssp -GGGTTCTTCCEEECCSS--CCCCCGGGG--------GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCC
T ss_pred -hhHhcCCCcCEEEccCC--ccCCChhhc--------CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccc
Confidence 13345566666666664 444443322 4566677777665432233335566677777777763 45555
Q ss_pred CCCCCcCCcceEEEcCCc
Q 007138 566 PEKGLPSSLLQLQIYCCP 583 (616)
Q Consensus 566 ~~~~~~~~L~~L~i~~c~ 583 (616)
++...+++|++|++++|+
T Consensus 327 ~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 327 RPLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGGCTTCSEESSSCC-
T ss_pred cChhhhhccceeehhhhc
Confidence 543345667777776665
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=5.1e-23 Score=215.01 Aligned_cols=330 Identities=24% Similarity=0.241 Sum_probs=210.3
Q ss_pred CCccCCCcceeecccccccccccccCCCcccccCCCc-------------ceEeeccCCCcccccCCCCCCccEEeecCC
Q 007138 16 SPIPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKL-------------RELHIISCSKLQGTFPEHLPALEMLVIEGC 82 (616)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L-------------~~L~l~~c~~l~~~~p~~~~~L~~L~l~~c 82 (616)
++..+++|++|++.++. +.+..+... +.+.+| ++|++++|. ++ .+|...++|+.|+++++
T Consensus 29 ~i~~L~~L~~L~l~~n~-~~~~~p~~~----~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~-~lp~~~~~L~~L~l~~n 101 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSE-WERNAPPGN----GEQREMAVSRLRDCLDRQAHELELNNLG-LS-SLPELPPHLESLVASCN 101 (454)
T ss_dssp -----CCHHHHHHHHHH-HHHTSCTTS----CCCHHHHHHHHHHHHHHTCSEEECTTSC-CS-CCCSCCTTCSEEECCSS
T ss_pred hHhcccchhhhhccCCc-ccccCCccc----ccchhcchhhhhhhhccCCCEEEecCCc-cc-cCCCCcCCCCEEEccCC
Confidence 46778889999999873 454444333 666654 888888885 55 56666678888888877
Q ss_pred cchhhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccch
Q 007138 83 EELLVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHN 162 (616)
Q Consensus 83 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (616)
..-. .-...++|++|++++|....++ ...++|+.|.+.++.-.. .+
T Consensus 102 ~l~~-lp~~~~~L~~L~l~~n~l~~l~----------------------------~~~~~L~~L~L~~n~l~~----lp- 147 (454)
T 1jl5_A 102 SLTE-LPELPQSLKSLLVDNNNLKALS----------------------------DLPPLLEYLGVSNNQLEK----LP- 147 (454)
T ss_dssp CCSS-CCCCCTTCCEEECCSSCCSCCC----------------------------SCCTTCCEEECCSSCCSS----CC-
T ss_pred cCCc-cccccCCCcEEECCCCccCccc----------------------------CCCCCCCEEECcCCCCCC----Cc-
Confidence 5221 1123478888888888654422 122678888887764432 23
Q ss_pred hHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCC
Q 007138 163 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF 242 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 242 (616)
.++.+++|++|+++++. ++.++.. +.+|++|++++|.. +.+| .++.+++|++|++++| .++.+
T Consensus 148 -~~~~l~~L~~L~l~~N~-l~~lp~~------------~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N-~l~~l 210 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNS-LKKLPDL------------PPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNN-SLKKL 210 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSCCCCC------------CTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSS-CCSSC
T ss_pred -ccCCCCCCCEEECCCCc-CcccCCC------------cccccEEECcCCcC-CcCc-cccCCCCCCEEECCCC-cCCcC
Confidence 36888899999998874 5554432 25889999998865 5577 5888999999999888 46666
Q ss_pred CCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccc
Q 007138 243 PEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQS 322 (616)
Q Consensus 243 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 322 (616)
|.. +++|++|++++|. +..++.. ..+++|++|+++++. ++.++. .+++|+.|+++++ .++.+ +..
T Consensus 211 ~~~--~~~L~~L~l~~n~-l~~lp~~---~~l~~L~~L~l~~N~-l~~l~~--~~~~L~~L~l~~N-~l~~l--~~~--- 275 (454)
T 1jl5_A 211 PDL--PLSLESIVAGNNI-LEELPEL---QNLPFLTTIYADNNL-LKTLPD--LPPSLEALNVRDN-YLTDL--PEL--- 275 (454)
T ss_dssp CCC--CTTCCEEECCSSC-CSSCCCC---TTCTTCCEEECCSSC-CSSCCS--CCTTCCEEECCSS-CCSCC--CCC---
T ss_pred CCC--cCcccEEECcCCc-CCccccc---CCCCCCCEEECCCCc-CCcccc--cccccCEEECCCC-ccccc--Ccc---
Confidence 643 4688999998886 5566643 567888888888763 555543 3468888888877 45444 332
Q ss_pred cccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccc
Q 007138 323 SRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNL 402 (616)
Q Consensus 323 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 402 (616)
.++|++|+++++ .++. .+ .+|++|++|++++|...+ ++. -.++|+.|++++|. +
T Consensus 276 -----~~~L~~L~ls~N-~l~~-l~--------------~~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~-l 329 (454)
T 1jl5_A 276 -----PQSLTFLDVSEN-IFSG-LS--------------ELPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNK-L 329 (454)
T ss_dssp -----CTTCCEEECCSS-CCSE-ES--------------CCCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSC-C
T ss_pred -----cCcCCEEECcCC-ccCc-cc--------------CcCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCc-c
Confidence 246788888773 2332 11 011567777777764432 221 11477777777765 3
Q ss_pred ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 403 KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
..+|.. +++|+.|++++| .+..+|. . +++|++|++++ +.+++
T Consensus 330 ~~lp~~---~~~L~~L~L~~N-~l~~lp~-~--l~~L~~L~L~~-N~l~~ 371 (454)
T 1jl5_A 330 IELPAL---PPRLERLIASFN-HLAEVPE-L--PQNLKQLHVEY-NPLRE 371 (454)
T ss_dssp SCCCCC---CTTCCEEECCSS-CCSCCCC-C--CTTCCEEECCS-SCCSS
T ss_pred cccccc---CCcCCEEECCCC-ccccccc-h--hhhccEEECCC-CCCCc
Confidence 345542 467777777776 4556665 2 34777777776 45554
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.7e-22 Score=204.50 Aligned_cols=302 Identities=16% Similarity=0.230 Sum_probs=187.2
Q ss_pred CCCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 138 PRIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
..+++|+.|.+.+...... ..+..+++|++|++++|. ++.++. +..+ ++|++|++++|.. +.
T Consensus 41 ~~l~~L~~L~l~~~~i~~~------~~~~~~~~L~~L~l~~n~-i~~~~~------~~~l----~~L~~L~L~~n~i-~~ 102 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI------QGIEYLTNLEYLNLNGNQ-ITDISP------LSNL----VKLTNLYIGTNKI-TD 102 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC------TTGGGCTTCCEEECCSSC-CCCCGG------GTTC----TTCCEEECCSSCC-CC
T ss_pred hhcccccEEEEeCCccccc------hhhhhcCCccEEEccCCc-cccchh------hhcC----CcCCEEEccCCcc-cC
Confidence 3578899999988655432 236889999999999974 665532 4444 8999999999865 56
Q ss_pred cccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCC
Q 007138 218 LPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 297 (616)
Q Consensus 218 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 297 (616)
++ .+..+++|++|++++| .++.++....+++|++|++++|.....++.. ..+++|++|+++++. +..++....+
T Consensus 103 ~~-~~~~l~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~l~~L~~L~l~~~~-~~~~~~~~~l 176 (347)
T 4fmz_A 103 IS-ALQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLSDLSPL---SNMTGLNYLTVTESK-VKDVTPIANL 176 (347)
T ss_dssp CG-GGTTCTTCSEEECTTS-CCCCCGGGTTCTTCCEEECTTCTTCCCCGGG---TTCTTCCEEECCSSC-CCCCGGGGGC
T ss_pred ch-HHcCCCcCCEEECcCC-cccCchhhccCCceeEEECCCCCCcccccch---hhCCCCcEEEecCCC-cCCchhhccC
Confidence 65 5899999999999998 5777777788999999999999878777764 778999999999874 4444434445
Q ss_pred CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCC
Q 007138 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377 (616)
Q Consensus 298 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 377 (616)
++|+.|++++| .++.+ +. +.. + ++|+.+++++|..
T Consensus 177 ~~L~~L~l~~n-~l~~~--~~-~~~-----l------------------------------------~~L~~L~l~~n~l 211 (347)
T 4fmz_A 177 TDLYSLSLNYN-QIEDI--SP-LAS-----L------------------------------------TSLHYFTAYVNQI 211 (347)
T ss_dssp TTCSEEECTTS-CCCCC--GG-GGG-----C------------------------------------TTCCEEECCSSCC
T ss_pred CCCCEEEccCC-ccccc--cc-ccC-----C------------------------------------CccceeecccCCC
Confidence 56666666555 23332 11 111 3 4455555555433
Q ss_pred chhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhh
Q 007138 378 LESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRY 457 (616)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 457 (616)
.+..+ +..+++|+.|++++|. +..++. +..+++|++|++++| .+..++ ....+++|++|++++| .+++. +
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~-~-- 281 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDI-S-- 281 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCC-G--
T ss_pred CCCch--hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCC-h--
Confidence 32211 4455666666666654 333333 566666777777666 333332 2233446777777664 44332 1
Q ss_pred HhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcc
Q 007138 458 MIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537 (616)
Q Consensus 458 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 537 (616)
.+..+++|+.|++++| .+...+... +..+++|++|++++|+
T Consensus 282 ------------------------------~~~~l~~L~~L~L~~n--~l~~~~~~~------l~~l~~L~~L~L~~n~- 322 (347)
T 4fmz_A 282 ------------------------------VLNNLSQLNSLFLNNN--QLGNEDMEV------IGGLTNLTTLFLSQNH- 322 (347)
T ss_dssp ------------------------------GGGGCTTCSEEECCSS--CCCGGGHHH------HHTCTTCSEEECCSSS-
T ss_pred ------------------------------hhcCCCCCCEEECcCC--cCCCcChhH------hhccccCCEEEccCCc-
Confidence 2234455555555553 232222111 0135566666666643
Q ss_pred ccccccccccCccccEEEecC
Q 007138 538 LERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 538 l~~i~~~~~~~~~L~~L~l~~ 558 (616)
++.+++ +..+++|++|++++
T Consensus 323 l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 323 ITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CCCCGG-GGGCTTCSEESSSC
T ss_pred cccccC-hhhhhccceeehhh
Confidence 444443 55566666666666
No 33
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.1e-22 Score=221.34 Aligned_cols=225 Identities=19% Similarity=0.123 Sum_probs=155.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccc--cccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 442 (616)
..++.+.+..+..... .....+++|+.+++++|.... ..+.....+.+|+.+++..+. ...++.....+++|+.+
T Consensus 349 ~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHL 425 (635)
T ss_dssp TTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEE
T ss_pred hhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccch
Confidence 6677777777654332 234567899999999876432 234455678899999998873 44555556667799999
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccc-ccccccccCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVS-FPLEDKRLGTAL 521 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~-l~~~~~~~~~~~ 521 (616)
++..++......+ ..+..+.+++.++++.|... ...+..+..+++|+.|++++|. .... .+.. +
T Consensus 426 ~l~~~~~~~~~~~---~~~~~l~~l~~l~ls~n~l~----~~~~~~~~~~~~L~~L~Ls~N~-~~~~~~~~~-------~ 490 (635)
T 4g8a_A 426 DFQHSNLKQMSEF---SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-------F 490 (635)
T ss_dssp ECTTSEEESTTSS---CTTTTCTTCCEEECTTSCCE----ECCTTTTTTCTTCCEEECTTCE-EGGGEECSC-------C
T ss_pred hhhhccccccccc---cccccccccccccccccccc----cccccccccchhhhhhhhhhcc-cccccCchh-------h
Confidence 9998654433222 25678899999999988632 1223356778999999999962 2332 3332 3
Q ss_pred CCCCccceEecccCccccccc-cccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcCCchhhhhhhcCCCCccc
Q 007138 522 PLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCCPLIAEKCRKDGGQYWD 598 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~w~ 598 (616)
..+++|++|++++| .++.++ ..+..+++|++|++++ ++++.++... .+++|++|+++++....- ......
T Consensus 491 ~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~l~ 563 (635)
T 4g8a_A 491 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-----KKQELQ 563 (635)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSCCCBC-----CSSCTT
T ss_pred hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCcCCCC-----CHHHHH
Confidence 47899999999995 577764 4788999999999999 7899988753 378999999999863221 111122
Q ss_pred cc-CCccEEEEcCeecc
Q 007138 599 LL-THIPHVVIDDKRVF 614 (616)
Q Consensus 599 ~i-~~i~~~~~~~~~~~ 614 (616)
.+ ..+.++.+.++.+.
T Consensus 564 ~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 564 HFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CCCTTCCEEECTTCCBC
T ss_pred hhhCcCCEEEeeCCCCc
Confidence 23 56777887776553
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.5e-21 Score=200.93 Aligned_cols=265 Identities=20% Similarity=0.206 Sum_probs=177.9
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.+.+++.|.+.+.... ..+...+..+++|++|+++++. ++.++.. .+..+ ++|++|++++|......
T Consensus 43 ~l~~l~~l~l~~~~l~----~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ-IEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEES----EECTHHHHHCCCCSEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCchh----hCChhHhcccccCcEEECCCCc-ccccChh----hccCC----CCcCEEECCCCCCCcCC
Confidence 4578888888775433 3567778899999999999875 6655543 25555 88999999998864444
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 296 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 296 (616)
|..++.+++|++|++++| .++.+|. +..+++|++|++++|. +..++.... ..+++|++|+++++. ++.++ ...
T Consensus 110 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~ 184 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 184 (390)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC-GGG
T ss_pred HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhc-cCCCCCCEEECCCCc-CCccc-ccc
Confidence 566889999999999998 5777774 3568999999999887 444433211 456888999888764 44443 344
Q ss_pred CCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCC
Q 007138 297 PPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 376 (616)
Q Consensus 297 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 376 (616)
+++|+.++++++ .++.+.. .++|++|+++++ .+.. .+.... ++|+.|++++|.
T Consensus 185 l~~L~~L~l~~n-~l~~~~~-----------~~~L~~L~l~~n-~l~~-~~~~~~-------------~~L~~L~l~~n~ 237 (390)
T 3o6n_A 185 IPSLFHANVSYN-LLSTLAI-----------PIAVEELDASHN-SINV-VRGPVN-------------VELTILKLQHNN 237 (390)
T ss_dssp CTTCSEEECCSS-CCSEEEC-----------CSSCSEEECCSS-CCCE-EECCCC-------------SSCCEEECCSSC
T ss_pred ccccceeecccc-cccccCC-----------CCcceEEECCCC-eeee-cccccc-------------ccccEEECCCCC
Confidence 568888888776 3443311 245778888773 3333 221111 567777777775
Q ss_pred CchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 377 KLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 377 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
..+. ..+..+++|+.|++++|...+..|..+..+++|++|++++| .+..++.....+++|++|++++| .+++
T Consensus 238 l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 238 LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCC
T ss_pred Cccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-ccee
Confidence 5432 35666777777777777655555666777777777777776 45556555555567777777774 4544
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=2.1e-21 Score=202.91 Aligned_cols=319 Identities=18% Similarity=0.176 Sum_probs=207.6
Q ss_pred HHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC
Q 007138 164 LLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243 (616)
Q Consensus 164 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 243 (616)
.++.+++|++|+++++. ++.++ .+..+ ++|++|++++|.. +.+| ++.+++|++|++++|. ++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~-l~~~~------~l~~l----~~L~~L~Ls~n~l-~~~~--~~~l~~L~~L~Ls~N~-l~~~~ 101 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS-ITDMT------GIEKL----TGLTKLICTSNNI-TTLD--LSQNTNLTYLACDSNK-LTNLD 101 (457)
T ss_dssp EHHHHTTCCEEECCSSC-CCCCT------TGGGC----TTCSEEECCSSCC-SCCC--CTTCTTCSEEECCSSC-CSCCC
T ss_pred ChhHcCCCCEEEccCCC-cccCh------hhccc----CCCCEEEccCCcC-CeEc--cccCCCCCEEECcCCC-Cceee
Confidence 35778999999998864 55543 24555 8899999999875 5565 7889999999999884 66665
Q ss_pred CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccccccc
Q 007138 244 EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSS 323 (616)
Q Consensus 244 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 323 (616)
+..+++|++|++++|. +..++ . ..+++|++|+++++. ++.++ ...+++|+.|++++|..++.+. +.
T Consensus 102 -~~~l~~L~~L~L~~N~-l~~l~-~---~~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~----~~-- 167 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNK-LTKLD-V---SQNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLD----VT-- 167 (457)
T ss_dssp -CTTCTTCCEEECCSSC-CSCCC-C---TTCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCC----CT--
T ss_pred -cCCCCcCCEEECCCCc-CCeec-C---CCCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCcccccc----cc--
Confidence 6678899999998886 55554 1 566888888888764 55543 4556788888888876555541 12
Q ss_pred ccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccc
Q 007138 324 RRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLK 403 (616)
Q Consensus 324 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 403 (616)
.+++|++|+++++ .++. .+ +..+ ++|+.|++++|...+ + .+..+++|+.|++++|. ++
T Consensus 168 ---~l~~L~~L~ls~n-~l~~-l~-------l~~l------~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~-l~ 225 (457)
T 3bz5_A 168 ---PQTQLTTLDCSFN-KITE-LD-------VSQN------KLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK-LT 225 (457)
T ss_dssp ---TCTTCCEEECCSS-CCCC-CC-------CTTC------TTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CS
T ss_pred ---cCCcCCEEECCCC-ccce-ec-------cccC------CCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc-cc
Confidence 2567888888773 3443 12 1122 677788887775443 2 25667778888887765 34
Q ss_pred cccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhh
Q 007138 404 ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMI 483 (616)
Q Consensus 404 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 483 (616)
.+| +..+++|+.|++++| .+..++...+ ++|+.++++. + +|+.+++++|...
T Consensus 226 ~ip--~~~l~~L~~L~l~~N-~l~~~~~~~l--~~L~~L~l~~-n-----------------~L~~L~l~~n~~~----- 277 (457)
T 3bz5_A 226 EID--VTPLTQLTYFDCSVN-PLTELDVSTL--SKLTTLHCIQ-T-----------------DLLEIDLTHNTQL----- 277 (457)
T ss_dssp CCC--CTTCTTCSEEECCSS-CCSCCCCTTC--TTCCEEECTT-C-----------------CCSCCCCTTCTTC-----
T ss_pred ccC--ccccCCCCEEEeeCC-cCCCcCHHHC--CCCCEEeccC-C-----------------CCCEEECCCCccC-----
Confidence 455 667777888888777 4555553333 3666666554 2 3344555555311
Q ss_pred hcCccccccCCccEEEEecCCCccccccccccccCC-CCCCCCccceEecccCccccccccccccCccccEEEecCCCCC
Q 007138 484 ERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGT-ALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKL 562 (616)
Q Consensus 484 ~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l 562 (616)
..-.+..+++|+.|++++| ..+..++.....+.. .+...++|++|++++ +.++.++ +..+++|++|++++ +++
T Consensus 278 -~~~~~~~l~~L~~L~Ls~n-~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~-N~l~~l~--l~~l~~L~~L~l~~-N~l 351 (457)
T 3bz5_A 278 -IYFQAEGCRKIKELDVTHN-TQLYLLDCQAAGITELDLSQNPKLVYLYLNN-TELTELD--VSHNTKLKSLSCVN-AHI 351 (457)
T ss_dssp -CEEECTTCTTCCCCCCTTC-TTCCEEECTTCCCSCCCCTTCTTCCEEECTT-CCCSCCC--CTTCTTCSEEECCS-SCC
T ss_pred -CcccccccccCCEEECCCC-cccceeccCCCcceEechhhcccCCEEECCC-Ccccccc--cccCCcCcEEECCC-CCC
Confidence 0112345677777777774 344444432221111 123568889999988 4577764 78899999999998 777
Q ss_pred cccCC
Q 007138 563 KYFPE 567 (616)
Q Consensus 563 ~~l~~ 567 (616)
+.++.
T Consensus 352 ~~l~~ 356 (457)
T 3bz5_A 352 QDFSS 356 (457)
T ss_dssp CBCTT
T ss_pred CCccc
Confidence 77654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=3.2e-21 Score=198.45 Aligned_cols=306 Identities=18% Similarity=0.149 Sum_probs=176.5
Q ss_pred cCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC--
Q 007138 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-- 244 (616)
Q Consensus 167 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 244 (616)
.++++++|+++++. ++.++.. .+..+ ++|++|++++|......+..++.+++|++|++++|. ++.++.
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~----~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred ccCCceEEEecCCc-hhhCChh----Hhccc----ccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHH
Confidence 46899999998865 6766654 35555 899999999987643344578899999999999984 666652
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccc
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSR 324 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 324 (616)
+..+++|++|++++|. +..++.... ..+++|++|+++++. +..++.. .+..
T Consensus 113 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~~~------------------------~~~~-- 163 (390)
T 3o6n_A 113 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDD------------------------TFQA-- 163 (390)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTT------------------------TTSS--
T ss_pred hcCCCCCCEEECCCCc-cCcCCHHHh-cCCCCCcEEECCCCc-cCccChh------------------------hccC--
Confidence 4568889999998886 555554321 345667777766653 2222211 1111
Q ss_pred cccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccc
Q 007138 325 RYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKI 404 (616)
Q Consensus 325 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 404 (616)
+++|++|+++++ .++. .+ +..+ ++|+.|+++++.... +...++|+.|++++|. +..
T Consensus 164 ---l~~L~~L~l~~n-~l~~-~~-------~~~l------~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~-l~~ 219 (390)
T 3o6n_A 164 ---TTSLQNLQLSSN-RLTH-VD-------LSLI------PSLFHANVSYNLLST-----LAIPIAVEELDASHNS-INV 219 (390)
T ss_dssp ---CTTCCEEECCSS-CCSB-CC-------GGGC------TTCSEEECCSSCCSE-----EECCSSCSEEECCSSC-CCE
T ss_pred ---CCCCCEEECCCC-cCCc-cc-------cccc------cccceeecccccccc-----cCCCCcceEEECCCCe-eee
Confidence 233444444431 1111 00 0000 334444444332111 1112244444444433 222
Q ss_pred ccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhh
Q 007138 405 LPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIE 484 (616)
Q Consensus 405 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 484 (616)
++. ...++|+.|++++| .+++. ..+..+++|+.|++++|... ..
T Consensus 220 ~~~--~~~~~L~~L~l~~n-------------------------~l~~~-----~~l~~l~~L~~L~Ls~n~l~----~~ 263 (390)
T 3o6n_A 220 VRG--PVNVELTILKLQHN-------------------------NLTDT-----AWLLNYPGLVEVDLSYNELE----KI 263 (390)
T ss_dssp EEC--CCCSSCCEEECCSS-------------------------CCCCC-----GGGGGCTTCSEEECCSSCCC----EE
T ss_pred ccc--cccccccEEECCCC-------------------------CCccc-----HHHcCCCCccEEECCCCcCC----Cc
Confidence 221 11234444444443 22221 12334444444444444311 01
Q ss_pred cCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcc
Q 007138 485 RGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 485 ~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~ 564 (616)
.+..+..+++|++|++++| .++.++... ..+++|++|++++| .+..+|..+..+++|++|++++ +.++.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n--~l~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~-N~i~~ 332 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNN--RLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH-NSIVT 332 (390)
T ss_dssp ESGGGTTCSSCCEEECCSS--CCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS-SCCCC
T ss_pred ChhHccccccCCEEECCCC--cCcccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCC-Cccce
Confidence 1225567788888888886 566655543 25788999999985 6778887788889999999998 66777
Q ss_pred cCCCCCcCCcceEEEcCCc
Q 007138 565 FPEKGLPSSLLQLQIYCCP 583 (616)
Q Consensus 565 l~~~~~~~~L~~L~i~~c~ 583 (616)
++. ..+++|++|++++++
T Consensus 333 ~~~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 333 LKL-STHHTLKNLTLSHND 350 (390)
T ss_dssp CCC-CTTCCCSEEECCSSC
T ss_pred eCc-hhhccCCEEEcCCCC
Confidence 763 446789999999876
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.5e-22 Score=220.60 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=71.4
Q ss_pred hHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCC-
Q 007138 163 ELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVS- 241 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~- 241 (616)
.....+++|++|+++++. ++.+.... +..+...+++|++|++++|.. ..++..++.+++|++|+++++.....
T Consensus 186 ~~~~~~~~L~~L~L~~n~-~~~~~~~~----l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 186 ELAQHNTSLEVLNFYMTE-FAKISPKD----LETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp HHHHHCCCCCEEECTTCC-CSSCCHHH----HHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred HHHhcCCCccEEEeeccC-CCccCHHH----HHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccch
Confidence 445667777777776654 33222222 222222337778888877654 45666677777788887765422211
Q ss_pred ---CCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccc---cCCCCCccEEEEe
Q 007138 242 ---FPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA---VQLPPSLKQLSIS 306 (616)
Q Consensus 242 ---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~ 306 (616)
...+..+++|+.+++.++. ...++... ..+++|++|++++|. +..... ...+++|+.|+++
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~--~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYMG-PNEMPILF--PFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTCC-TTTGGGGG--GGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhhccccccccCccccc-hhHHHHHH--hhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 1133446677777776542 22233221 234566666666654 322211 1344566666665
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=4.7e-21 Score=202.78 Aligned_cols=179 Identities=21% Similarity=0.197 Sum_probs=122.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|..+..++...+...+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 56666666666444333345667778888888777654444446777888888888887777777776666567888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++..+. .+.++++|+.|++++|... ......+..+++|+.|++++| .+..+.... +..+
T Consensus 232 ~~n-~l~~~~~~---~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~------~~~l 295 (477)
T 2id5_A 232 THC-NLTAVPYL---AVRHLVYLRFLNLSYNPIS----TIEGSMLHELLRLQEIQLVGG--QLAVVEPYA------FRGL 295 (477)
T ss_dssp ESS-CCCSCCHH---HHTTCTTCCEEECCSSCCC----EECTTSCTTCTTCCEEECCSS--CCSEECTTT------BTTC
T ss_pred cCC-cccccCHH---HhcCccccCeeECCCCcCC----ccChhhccccccCCEEECCCC--ccceECHHH------hcCc
Confidence 884 56654332 4567777888888777522 122335678889999999886 555543321 3367
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCC
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCP 560 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~ 560 (616)
++|+.|++++| .++.++. .+..+++|++|++++++
T Consensus 296 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 296 NYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp TTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 88999999984 6777775 56788899999998843
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=9.3e-21 Score=205.80 Aligned_cols=305 Identities=20% Similarity=0.208 Sum_probs=218.5
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKL 218 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~ 218 (616)
.+.+++.+.+.+.... ..+...+..+++|++|+++++. ++.+++. .+..+ ++|++|++++|......
T Consensus 49 ~l~~l~~l~l~~~~l~----~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR----KLPAALLDSFRQVELLNLNDLQ-IEEIDTY----AFAYA----HTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCEES----EECTHHHHHCCCCSEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCCCC----CcCHHHHccCCCCcEEECCCCC-CCCCChH----HhcCC----CCCCEEECCCCcCCCCC
Confidence 3567777877765432 3677888999999999999976 6665543 35555 89999999999874445
Q ss_pred ccccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCC
Q 007138 219 PQSSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQL 296 (616)
Q Consensus 219 ~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 296 (616)
|..++.+++|++|++++| .++.+|. +..+++|++|++++|. +..++.... ..+++|+.|+++++. +..++ ...
T Consensus 116 ~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~ 190 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTF-QATTSLQNLQLSSNR-LTHVD-LSL 190 (597)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTCCEEECTTSC-CSBCC-GGG
T ss_pred HHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhh-hcCCcCcEEECcCCC-CCCcC-hhh
Confidence 556799999999999998 5777774 3569999999999997 444443211 567899999999864 55553 355
Q ss_pred CCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCC
Q 007138 297 PPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCS 376 (616)
Q Consensus 297 ~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~ 376 (616)
+++|+.|+++++ .+..+.. .++|++|+++++ .+.. ++.... ++|+.|++++|.
T Consensus 191 l~~L~~L~l~~n-~l~~l~~-----------~~~L~~L~ls~n-~l~~-~~~~~~-------------~~L~~L~L~~n~ 243 (597)
T 3oja_B 191 IPSLFHANVSYN-LLSTLAI-----------PIAVEELDASHN-SINV-VRGPVN-------------VELTILKLQHNN 243 (597)
T ss_dssp CTTCSEEECCSS-CCSEEEC-----------CTTCSEEECCSS-CCCE-EECSCC-------------SCCCEEECCSSC
T ss_pred hhhhhhhhcccC-ccccccC-----------CchhheeeccCC-cccc-cccccC-------------CCCCEEECCCCC
Confidence 679999999887 4544311 357999999984 3443 221111 689999999987
Q ss_pred CchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhh
Q 007138 377 KLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHR 456 (616)
Q Consensus 377 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 456 (616)
..+ +..+..+++|+.|++++|...+..|..+..+++|+.|++++| .+..+|.....+++|++|++++| .++++.+
T Consensus 244 l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~- 318 (597)
T 3oja_B 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER- 318 (597)
T ss_dssp CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG-
T ss_pred CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc-
Confidence 654 356788899999999998876667888899999999999998 56777777767779999999995 5665432
Q ss_pred hHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 457 YMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 457 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
.+..+++|+.|++++|... ...+..+++|+.|++++|
T Consensus 319 ---~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 319 ---NQPQFDRLENLYLDHNSIV-------TLKLSTHHTLKNLTLSHN 355 (597)
T ss_dssp ---GHHHHTTCSEEECCSSCCC-------CCCCCTTCCCSEEECCSS
T ss_pred ---ccccCCCCCEEECCCCCCC-------CcChhhcCCCCEEEeeCC
Confidence 2345556666666665421 112444555555555554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.8e-20 Score=203.57 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred cCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC--
Q 007138 167 DICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-- 244 (616)
Q Consensus 167 ~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-- 244 (616)
.+.+++.++++++. +..++.. .+..+ ++|++|++++|......|..++.+++|++|++++|. ++.++.
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 118 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV 118 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred cCCCceEEEeeCCC-CCCcCHH----HHccC----CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH
Confidence 46788999998865 6666654 35555 899999999987644445578899999999999984 666653
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC 285 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 285 (616)
+..+++|++|++++|. +..++.... ..+++|++|+++++
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~Ls~N 157 (597)
T 3oja_B 119 FQNVPLLTVLVLERND-LSSLPRGIF-HNTPKLTTLSMSNN 157 (597)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSS
T ss_pred HcCCCCCCEEEeeCCC-CCCCCHHHh-ccCCCCCEEEeeCC
Confidence 4568899999998886 556554321 34566777777665
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=6.2e-20 Score=194.15 Aligned_cols=294 Identities=18% Similarity=0.205 Sum_probs=134.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++++.|.+.+..... ..+..+..+++|++|+++++. ++.+.+. .+..+ ++|++|++++|.. +.+|.
T Consensus 32 ~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~-i~~~~~~----~~~~l----~~L~~L~L~~n~l-~~~~~ 97 (477)
T 2id5_A 32 TETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENI-VSAVEPG----AFNNL----FNLRTLGLRSNRL-KLIPL 97 (477)
T ss_dssp TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCC-CSCCT
T ss_pred CCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCc-cCEeChh----hhhCC----ccCCEEECCCCcC-CccCc
Confidence 355555555443322 233445566666666666543 3333221 23333 5566666666543 33433
Q ss_pred -ccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCC
Q 007138 221 -SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLP 297 (616)
Q Consensus 221 -~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 297 (616)
.+..+++|++|++++|. +..++ .+..+++|++|++++|. +..+..... ..+++|++|+++++. ++.++..
T Consensus 98 ~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~--- 170 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDND-LVYISHRAF-SGLNSLEQLTLEKCN-LTSIPTE--- 170 (477)
T ss_dssp TSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTT-CCEECTTSS-TTCTTCCEEEEESCC-CSSCCHH---
T ss_pred ccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCc-cceeChhhc-cCCCCCCEEECCCCc-CcccChh---
Confidence 34556666666666653 33322 23345556666665554 222221100 233445555554432 2222211
Q ss_pred CCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCC
Q 007138 298 PSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSK 377 (616)
Q Consensus 298 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~ 377 (616)
.+.. +++|+.|+++++ .+.. .+.. .+..+ ++|+.|++++|..
T Consensus 171 ---------------------~l~~-----l~~L~~L~l~~n-~i~~-~~~~----~~~~l------~~L~~L~l~~~~~ 212 (477)
T 2id5_A 171 ---------------------ALSH-----LHGLIVLRLRHL-NINA-IRDY----SFKRL------YRLKVLEISHWPY 212 (477)
T ss_dssp ---------------------HHTT-----CTTCCEEEEESC-CCCE-ECTT----CSCSC------TTCCEEEEECCTT
T ss_pred ---------------------Hhcc-----cCCCcEEeCCCC-cCcE-eChh----hcccC------cccceeeCCCCcc
Confidence 1111 344444544442 2221 1100 11111 4555555555555
Q ss_pred chhhhhhccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchh
Q 007138 378 LESIAERLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
.+.++.......+|+.|++++|. ++.+| ..+..+++|+.|++++|. +..++.. ...+++|++|++++ +.+++..|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~ 289 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVG-GQLAVVEP 289 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCS-SCCSEECT
T ss_pred ccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCC-CccceECH
Confidence 55555444444456666665554 33333 244555666666666553 3333322 22344566666655 34444433
Q ss_pred hhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 456 RYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 456 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
. .+..+++|+.|++++|.... .....+..+++|++|++++|
T Consensus 290 ~---~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 290 Y---AFRGLNYLRVLNVSGNQLTT----LEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp T---TBTTCTTCCEEECCSSCCSC----CCGGGBSCGGGCCEEECCSS
T ss_pred H---HhcCcccCCEEECCCCcCce----eCHhHcCCCcccCEEEccCC
Confidence 2 33444455555555443110 11124566677777777775
No 42
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=3.9e-22 Score=217.29 Aligned_cols=398 Identities=11% Similarity=0.055 Sum_probs=237.0
Q ss_pred CCCCCcEEEecCCCCcccccccchhHHhcCCC-ccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcc
Q 007138 139 RIPKLEELEIKNIENETYVWKSHNELLQDICS-LKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 217 (616)
.+++|+.|.+.++..... ....+...++. |++|++++|..++. ..+..+...+++|++|++++|.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~---~~~~l~~~~~~~L~~L~L~~~~~~~~-------~~l~~~~~~~~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL---DLDRLAKARADDLETLKLDKCSGFTT-------DGLLSIVTHCRKIKTLLMEESSFSEK 179 (592)
T ss_dssp HCTTCCEEEEESCBCCHH---HHHHHHHHHGGGCCEEEEESCEEEEH-------HHHHHHHHHCTTCSEEECTTCEEECC
T ss_pred hCCCCCeEEeeccEecHH---HHHHHHHhccccCcEEECcCCCCcCH-------HHHHHHHhhCCCCCEEECccccccCc
Confidence 466777777776633221 22222222444 88888888764322 12333333348888888888764222
Q ss_pred ----cccccCCCCCccEEEEcCCCCCCCC-----CC-CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCC
Q 007138 218 ----LPQSSLSLSSLREIEICKCSSLVSF-----PE-VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRS 287 (616)
Q Consensus 218 ----~~~~~~~l~~L~~L~l~~~~~l~~~-----~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (616)
++.....+++|++|++++|. ++.+ +. ...+++|++|++++|. +..++..+ ..+++|++|+++++..
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~--~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF--KAAANLEEFCGGSLNE 255 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH--HHCTTCCEEEECBCCC
T ss_pred chhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH--hhhhHHHhhccccccc
Confidence 33334567888888888774 3322 11 2247888888888876 44455433 4457888888875432
Q ss_pred Ccc----ccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCC
Q 007138 288 LTY----IAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNL 363 (616)
Q Consensus 288 l~~----~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~ 363 (616)
... ......+++|+.+.++++. ...+ +..+.. +++|++|++++|. ++. ..+...+..+
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l--~~~~~~-----~~~L~~L~Ls~~~-l~~----~~~~~~~~~~----- 317 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM--PILFPF-----AAQIRKLDLLYAL-LET----EDHCTLIQKC----- 317 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCC-TTTG--GGGGGG-----GGGCCEEEETTCC-CCH----HHHHHHHTTC-----
T ss_pred ccchHHHHHHhhccccccccCccccc-hhHH--HHHHhh-----cCCCcEEecCCCc-CCH----HHHHHHHHhC-----
Confidence 211 1222556788888887752 2222 443333 6789999999977 543 1111222333
Q ss_pred CCcccEEEecCCCCchhhhhhccCCCCccEEEccc----------cccccc--ccccccCCCCCcEEEeccCCCCcc-cC
Q 007138 364 PPSLKSLYVYGCSKLESIAERLDNNTSLETISIER----------CGNLKI--LPSGLHNLRQLQGIKIWNCGNLVS-FP 430 (616)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~--~~~~l~~l~~L~~L~l~~~~~~~~-~~ 430 (616)
++|+.|++.++.....++.....+++|+.|++++ |..++. ++.....+++|++|+++.+ .++. .+
T Consensus 318 -~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~ 395 (592)
T 3ogk_B 318 -PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESL 395 (592)
T ss_dssp -TTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHH
T ss_pred -cCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHH
Confidence 8899999985533344555556788999999995 655543 2333456899999999554 4432 11
Q ss_pred CCC-CCCCCceEEEcc---CCcccccchhh--hHhhhcccccceeeecCCChH--HHHHhhhcCccccccCCccEEEEec
Q 007138 431 EGG-LPCAKLRRLDIS---DCKRLEGGFHR--YMIALHNLTNLHSLYIGGNME--IWKSMIERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 431 ~~~-~~~~~L~~L~l~---~c~~l~~~~~~--~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~l~~L~~L~i~~ 502 (616)
... ..+++|+.|+++ .|+.+++...+ ....+..+++|+.|+++.+.. ...... .....+++|++|++++
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~---~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS---YIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH---HHHHSCTTCCEEEECS
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH---HHHHhCccceEeeccC
Confidence 111 125589999997 46788774221 222456789999999965331 110001 0123478999999998
Q ss_pred CCCccccccccccccCCCCCCCCccceEecccCccccc--cccccccCccccEEEecCCCCCcccCCCC---CcCCcceE
Q 007138 503 CDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLER--LSSSIVDLQNLTELVLVNCPKLKYFPEKG---LPSSLLQL 577 (616)
Q Consensus 503 ~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--i~~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L 577 (616)
|...-..++... ..+++|++|++++|+ ++. ++.....+++|++|++++|+ ++...... .+|.+...
T Consensus 473 n~l~~~~~~~~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 473 VGESDEGLMEFS-------RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CCSSHHHHHHHH-------TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEE
T ss_pred CCCCHHHHHHHH-------hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEE
Confidence 621112233322 257899999999987 443 34455679999999999976 55532221 24556555
Q ss_pred EEcCC
Q 007138 578 QIYCC 582 (616)
Q Consensus 578 ~i~~c 582 (616)
.+...
T Consensus 544 ~~~~~ 548 (592)
T 3ogk_B 544 LIPSR 548 (592)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 55543
No 43
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=4.5e-22 Score=216.88 Aligned_cols=212 Identities=16% Similarity=0.197 Sum_probs=121.1
Q ss_pred CccCCCcceeeccccccccccccc--CC--------CcccccCCCcceEeeccCCCcccc----cCCCCCCccEEeecCC
Q 007138 17 PIPFPCLETLRFENMQEWEDWIPL--RS--------GQGVEWFPKLRELHIISCSKLQGT----FPEHLPALEMLVIEGC 82 (616)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~~~~~~--~~--------~~~~~~~~~L~~L~l~~c~~l~~~----~p~~~~~L~~L~l~~c 82 (616)
+..|++|++|++.+++...+.... .. ..-...+++|++|++++|. +.+. +...+++|++|++.+|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCc
Confidence 456888999999888755433210 00 0001357889999999885 4433 2235788999999988
Q ss_pred cch-----hhhhcCCCCccEEEeCCCcceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccc
Q 007138 83 EEL-----LVSVASLPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYV 157 (616)
Q Consensus 83 ~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 157 (616)
..+ ......+++|++|++++|........ .+ ..++..+++|+.|.+.++. ....
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~--~l------------------~~~~~~~~~L~~L~l~~~~-~~~~ 199 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH--WL------------------SHFPDTYTSLVSLNISCLA-SEVS 199 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG--GG------------------GGSCTTCCCCCEEECTTCC-SCCC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH--HH------------------HHHhhcCCcCcEEEecccC-CcCC
Confidence 643 23345788999999998874331100 00 1233567788888887765 1111
Q ss_pred cccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCC------CcccccccCCCCCccEE
Q 007138 158 WKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEG------LVKLPQSSLSLSSLREI 231 (616)
Q Consensus 158 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~------~~~~~~~~~~l~~L~~L 231 (616)
..........+++|++|++++|..++.++ ..+..+ ++|++|+++++.. +..++..+.++++|+.|
T Consensus 200 ~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-----~~~~~~----~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~L 270 (594)
T 2p1m_B 200 FSALERLVTRCPNLKSLKLNRAVPLEKLA-----TLLQRA----PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCTTSCHHHHH-----HHHHHC----TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEE
T ss_pred HHHHHHHHHhCCCCcEEecCCCCcHHHHH-----HHHhcC----CcceEcccccccCccchhhHHHHHHHHhcCCCcccc
Confidence 12334445667888888888775444422 223444 7788888766532 12344456667777777
Q ss_pred -EEcCCCCCCCCCCCC-CCCCCcEEEccCCC
Q 007138 232 -EICKCSSLVSFPEVA-LPSKLKNIWISTCD 260 (616)
Q Consensus 232 -~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~ 260 (616)
.+.+. ....++... .+++|++|++++|.
T Consensus 271 s~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 271 SGFWDA-VPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp ECCBTC-CGGGGGGGHHHHTTCCEEECTTCC
T ss_pred cCCccc-chhhHHHHHHhhCCCCEEEccCCC
Confidence 23222 112222211 35666666666665
No 44
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.4e-21 Score=213.04 Aligned_cols=381 Identities=17% Similarity=0.184 Sum_probs=215.0
Q ss_pred ccCCCcceeecccccccccccccCCCcccccCCCcceEeeccCCCcccc-cC---CCCCCccEEeecCCcc-------hh
Q 007138 18 IPFPCLETLRFENMQEWEDWIPLRSGQGVEWFPKLRELHIISCSKLQGT-FP---EHLPALEMLVIEGCEE-------LL 86 (616)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~p---~~~~~L~~L~l~~c~~-------l~ 86 (616)
..+++|++|++.+|. +.+...... . ..+++|++|++.+|..+.+. ++ ..+++|++|++++|.. +.
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~l-~--~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLELI-A--KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHHH-H--HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHHH-H--HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 468899999999985 443332111 0 25899999999999655431 22 3689999999999971 22
Q ss_pred hhhcCCCCccEEEeCCCc-ceeecccccccCCCCceeecCCCcceeecCCCCCCCCCCcEEEecCCCCcccccccchhHH
Q 007138 87 VSVASLPALCKFEIGGCK-KVVWRSATDHLGSQNSVVCRDTSNQVFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELL 165 (616)
Q Consensus 87 ~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (616)
.....+++|++|++++|. ......+. .+...+++|+.|.+.++.... ..+..+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~----------------------~l~~~~~~L~~L~L~~~~~~~----~l~~~~ 231 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALE----------------------RLVTRCPNLKSLKLNRAVPLE----KLATLL 231 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHH----------------------HHHHHCTTCCEEECCTTSCHH----HHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHH----------------------HHHHhCCCCcEEecCCCCcHH----HHHHHH
Confidence 233478899999999986 11111110 011346899999999884432 256677
Q ss_pred hcCCCccEEeeccCCC-ccccchhhhhhHHhhhhhccCCCcEE-EccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC
Q 007138 166 QDICSLKRLTITSCPK-LQSLVAEEEKDQQQQLCELSCRLEYL-RLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP 243 (616)
Q Consensus 166 ~~l~~L~~L~l~~~~~-l~~l~~~~~~~~l~~l~~~~~~L~~L-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 243 (616)
..+++|++|++..+.. +..-.-..+...+.. +++|+.| .+.+... ..++..+..+++|++|++++|. ++...
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~----~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~-l~~~~ 305 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSG----CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYAT-VQSYD 305 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT----CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCC-CCHHH
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhc----CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCC-CCHHH
Confidence 8999999999887653 111001111122333 3888888 4444332 4566656678899999999986 54321
Q ss_pred --C-CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC--------CCCcccccc---CCCCCccEEEEecCC
Q 007138 244 --E-VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC--------RSLTYIAAV---QLPPSLKQLSISDCD 309 (616)
Q Consensus 244 --~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~--------~~l~~~~~~---~~~~~L~~L~l~~~~ 309 (616)
. ...+++|++|++.+| +.+.........+++|++|++.+| ..+...... ..+++|+.|.+. |.
T Consensus 306 l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~ 382 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CR 382 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ES
T ss_pred HHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cC
Confidence 1 345789999999887 222111111134678888888443 333321111 225677877543 33
Q ss_pred CCCcccccccccccccccCCCccEEecc-----CCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhh
Q 007138 310 NIRTLTVEEGIQSSRRYTSCLLEHLDIS-----SCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAER 384 (616)
Q Consensus 310 ~l~~l~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 384 (616)
.++...+..... .+++|++|+++ +|..++.......++..+..+ ++|+.|++++ ...+..+..
T Consensus 383 ~l~~~~~~~l~~-----~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~------~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 383 QMTNAALITIAR-----NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC------KDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp CCCHHHHHHHHH-----HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC------TTCCEEECCS-SCCHHHHHH
T ss_pred CcCHHHHHHHHh-----hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC------CCccEEeecC-cccHHHHHH
Confidence 554432111111 25677888777 555655311011122222333 5677777755 222222223
Q ss_pred ccC-CCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcc-cCCCCCCCCCceEEEccCCcc
Q 007138 385 LDN-NTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVS-FPEGGLPCAKLRRLDISDCKR 449 (616)
Q Consensus 385 ~~~-~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~ 449 (616)
+.. +++|+.|++++|.........+ ..+++|+.|++++|+.... +......+++|++|++++|+.
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 332 5667777776665322222222 4566777777776653111 111122244666677666643
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.3e-18 Score=174.61 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=115.9
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccc--cccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|.... ..+..+..+++|++|++++| .+..+|....+ +|++|
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~--~L~~L 197 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP--SLTEL 197 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCT--TCSEE
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccc--cCCEE
Confidence 345555555554443334456667777888887765432 34556778888888888887 56667665553 88999
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++| .+++..+. .+..+++|++|++++| .++.++... +.
T Consensus 198 ~l~~n-~l~~~~~~-------------------------------~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~ 237 (330)
T 1xku_A 198 HLDGN-KITKVDAA-------------------------------SLKGLNNLAKLGLSFN--SISAVDNGS------LA 237 (330)
T ss_dssp ECTTS-CCCEECTG-------------------------------GGTTCTTCCEEECCSS--CCCEECTTT------GG
T ss_pred ECCCC-cCCccCHH-------------------------------HhcCCCCCCEEECCCC--cCceeChhh------cc
Confidence 99884 56655443 3345556666666654 343333211 12
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCC--------cCCcceEEEcCCchhhhhhhcCCC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--------PSSLLQLQIYCCPLIAEKCRKDGG 594 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~~l~~~~~~~~~ 594 (616)
.+++|++|++++| .+..+|..+..+++|++|++++ +.++.++...+ .+.|+.++++++|..... ...
T Consensus 238 ~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~---i~~ 312 (330)
T 1xku_A 238 NTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE---IQP 312 (330)
T ss_dssp GSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG---SCG
T ss_pred CCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccccc---cCc
Confidence 4566777777763 4666666666677777777776 56666655322 256777777777633211 111
Q ss_pred CcccccCCccEEEEcCe
Q 007138 595 QYWDLLTHIPHVVIDDK 611 (616)
Q Consensus 595 ~~w~~i~~i~~~~~~~~ 611 (616)
..+..+.++..+.+.++
T Consensus 313 ~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGTTCCCGGGEEC---
T ss_pred cccccccceeEEEeccc
Confidence 23444556666655443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=7.6e-19 Score=176.23 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=121.5
Q ss_pred CCCcEEEccCCCCCcccc-cccCCCCCccEEEEcCCCCCCCC-C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLP-QSSLSLSSLREIEICKCSSLVSF-P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|+.|++++|.. +.++ ..++.+++|++|++++|. ++.+ | .+..+++|++|++++|. ++.++... .++|+
T Consensus 52 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~~L~ 124 (330)
T 1xku_A 52 PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM----PKTLQ 124 (330)
T ss_dssp TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC----CTTCC
T ss_pred CCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccChhh----ccccc
Confidence 3455555555443 2222 234455555555555542 3333 2 23334555555555444 33333321 14455
Q ss_pred EEEeccCCCCccccc--cCCCCCccEEEEecCCCCCccc-ccccccccccccCCCccEEeccCCCCcccccccCCCcccc
Q 007138 279 ILSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLT-VEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 355 (616)
+|+++++. +..++. ...+++|+.|+++++. ++... .+..+.. +++|++|+++++ .++. ++....
T Consensus 125 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-----l~~L~~L~l~~n-~l~~-l~~~~~---- 191 (330)
T 1xku_A 125 ELRVHENE-ITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQG-----MKKLSYIRIADT-NITT-IPQGLP---- 191 (330)
T ss_dssp EEECCSSC-CCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGG-----CTTCCEEECCSS-CCCS-CCSSCC----
T ss_pred EEECCCCc-ccccCHhHhcCCccccEEECCCCc-CCccCcChhhccC-----CCCcCEEECCCC-cccc-CCcccc----
Confidence 55555432 333222 1334455666655552 22110 0222222 567777777763 2332 221111
Q ss_pred cccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCC
Q 007138 356 ESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLP 435 (616)
Q Consensus 356 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 435 (616)
++|++|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|.....
T Consensus 192 ---------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~ 261 (330)
T 1xku_A 192 ---------PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD 261 (330)
T ss_dssp ---------TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT
T ss_pred ---------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCccCChhhcc
Confidence 57888888887665555666777888888888887654444446778888888888887 56677776667
Q ss_pred CCCceEEEccCCcccccchh
Q 007138 436 CAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~~~ 455 (616)
+++|++|++++ +.+++..+
T Consensus 262 l~~L~~L~l~~-N~i~~~~~ 280 (330)
T 1xku_A 262 HKYIQVVYLHN-NNISAIGS 280 (330)
T ss_dssp CSSCCEEECCS-SCCCCCCT
T ss_pred CCCcCEEECCC-CcCCccCh
Confidence 77888888888 45665543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.3e-21 Score=206.18 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=25.9
Q ss_pred CCcceEeeccCCCccccc----CCCCCCccEEeecCCcc-------hhhhhcCCCCccEEEeCCCcc
Q 007138 50 PKLRELHIISCSKLQGTF----PEHLPALEMLVIEGCEE-------LLVSVASLPALCKFEIGGCKK 105 (616)
Q Consensus 50 ~~L~~L~l~~c~~l~~~~----p~~~~~L~~L~l~~c~~-------l~~~~~~~~~L~~L~l~~~~~ 105 (616)
++|++|+++++. +.+.. ...+++|+.|++++|.- +...+..+++|++|++++|..
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC
Confidence 455666665553 22111 11345555555555541 123344455555555555543
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=5.7e-19 Score=177.27 Aligned_cols=221 Identities=18% Similarity=0.138 Sum_probs=115.3
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCC-C-CCCCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSF-P-EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
++|++|++++|......|..++.+++|++|++++|. ++.+ + .+..+++|++|++++|. +..++... .++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~----~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL----PSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC----CTTCCE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccc----cccCCE
Confidence 456666666655422223345556666666666553 3333 2 23445566666665554 44444331 145556
Q ss_pred EEeccCCCCccccc--cCCCCCccEEEEecCCCCCcccc-cccccccccccCCCccEEeccCCCCcccccccCCCccccc
Q 007138 280 LSIHGCRSLTYIAA--VQLPPSLKQLSISDCDNIRTLTV-EEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLE 356 (616)
Q Consensus 280 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 356 (616)
|+++++. +..++. ...+++|+.|+++++ .++...+ +..+.. + +|++|+++++ .++. ++....
T Consensus 128 L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~-----l-~L~~L~l~~n-~l~~-l~~~~~----- 192 (332)
T 2ft3_A 128 LRIHDNR-IRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDG-----L-KLNYLRISEA-KLTG-IPKDLP----- 192 (332)
T ss_dssp EECCSSC-CCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCS-----C-CCSCCBCCSS-BCSS-CCSSSC-----
T ss_pred EECCCCc-cCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccC-----C-ccCEEECcCC-CCCc-cCcccc-----
Confidence 6655542 333332 134456666666555 2322100 111111 2 5666666652 2222 111111
Q ss_pred ccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCC
Q 007138 357 SLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPC 436 (616)
Q Consensus 357 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 436 (616)
++|++|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++| .+..+|.....+
T Consensus 193 --------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l 263 (332)
T 2ft3_A 193 --------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDL 263 (332)
T ss_dssp --------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGC
T ss_pred --------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecChhhhcC
Confidence 45666777766555444455666777777777776544333445667777777777776 455666655556
Q ss_pred CCceEEEccCCcccccc
Q 007138 437 AKLRRLDISDCKRLEGG 453 (616)
Q Consensus 437 ~~L~~L~l~~c~~l~~~ 453 (616)
++|++|++++ +.+++.
T Consensus 264 ~~L~~L~l~~-N~l~~~ 279 (332)
T 2ft3_A 264 KLLQVVYLHT-NNITKV 279 (332)
T ss_dssp TTCCEEECCS-SCCCBC
T ss_pred ccCCEEECCC-CCCCcc
Confidence 6777777776 455554
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=1.4e-19 Score=179.80 Aligned_cols=252 Identities=17% Similarity=0.155 Sum_probs=184.5
Q ss_pred CccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCc
Q 007138 299 SLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKL 378 (616)
Q Consensus 299 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~ 378 (616)
+++.|+++++.--....++..+.. +++|++|++++++++.. .+|..+..+ ++|++|++++|...
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~-----l~~L~~L~L~~~n~l~~-----~~p~~l~~l------~~L~~L~Ls~n~l~ 114 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLAN-----LPYLNFLYIGGINNLVG-----PIPPAIAKL------TQLHYLYITHTNVS 114 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-----CTTCSEEEEEEETTEES-----CCCGGGGGC------TTCSEEEEEEECCE
T ss_pred eEEEEECCCCCccCCcccChhHhC-----CCCCCeeeCCCCCcccc-----cCChhHhcC------CCCCEEECcCCeeC
Confidence 566666666632220011444444 77888888886455553 334445555 88999999988777
Q ss_pred hhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCC-CceEEEccCCcccccchhhh
Q 007138 379 ESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA-KLRRLDISDCKRLEGGFHRY 457 (616)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~ 457 (616)
+.+|..+..+++|+.|++++|...+.+|..+..+++|++|++++|.....+|.....++ +|++|++++ +.+++..|.
T Consensus 115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~- 192 (313)
T 1ogq_A 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPP- 192 (313)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCG-
T ss_pred CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCCh-
Confidence 77888888899999999999876667888888999999999998854446776666665 899999998 577777665
Q ss_pred HhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcc
Q 007138 458 MIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPN 537 (616)
Q Consensus 458 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 537 (616)
.+..++ |+.|++++|.... ..+..+..+++|+.|++++| .+....... ..+++|++|++++|.-
T Consensus 193 --~~~~l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N--~l~~~~~~~-------~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 193 --TFANLN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKN--SLAFDLGKV-------GLSKNLNGLDLRNNRI 256 (313)
T ss_dssp --GGGGCC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSS--EECCBGGGC-------CCCTTCCEEECCSSCC
T ss_pred --HHhCCc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCC--ceeeecCcc-------cccCCCCEEECcCCcc
Confidence 344555 9999999886321 22345788999999999996 454333322 2679999999999654
Q ss_pred ccccccccccCccccEEEecCCCCCc-ccCCCCCcCCcceEEEcCCchh
Q 007138 538 LERLSSSIVDLQNLTELVLVNCPKLK-YFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 538 l~~i~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~i~~c~~l 585 (616)
...+|..+..+++|++|++++| .+. .+|....+++|+++++++++.+
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCcCChHHhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCc
Confidence 4478888999999999999994 555 7887766889999999998855
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=7.3e-19 Score=175.69 Aligned_cols=230 Identities=20% Similarity=0.325 Sum_probs=129.0
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC-CCCCCCCcEEEccCCCCccccchhhccCCCCCccEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE-VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEIL 280 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 280 (616)
.+++.|++++|.. +.+|..++.+++|++|++++|. ++.+|. +..+++|++|++++|. +..++..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l--~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASI--ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGG--GGCTTCCEE
T ss_pred cceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHH--hcCcCCCEE
Confidence 5666666666554 4666666666666666666663 445552 4456666666666665 33554433 344556666
Q ss_pred EeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccccccccc
Q 007138 281 SIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEV 360 (616)
Q Consensus 281 ~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~ 360 (616)
++++|.....++.. +....+ ...+.. +++|++|+++++ .++ .+|..+..+
T Consensus 156 ~L~~n~~~~~~p~~-----~~~~~~-----------~~~~~~-----l~~L~~L~L~~n-~l~------~lp~~l~~l-- 205 (328)
T 4fcg_A 156 SIRACPELTELPEP-----LASTDA-----------SGEHQG-----LVNLQSLRLEWT-GIR------SLPASIANL-- 205 (328)
T ss_dssp EEEEETTCCCCCSC-----SEEEC------------CCCEEE-----STTCCEEEEEEE-CCC------CCCGGGGGC--
T ss_pred ECCCCCCccccChh-----Hhhccc-----------hhhhcc-----CCCCCEEECcCC-CcC------cchHhhcCC--
Confidence 66655444433321 111000 000111 344555555542 222 122333333
Q ss_pred CCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCce
Q 007138 361 GNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLR 440 (616)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 440 (616)
++|++|++++|... .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|.....+++|+
T Consensus 206 ----~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 206 ----QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp ----TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred ----CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence 56666666666443 3555566667777777777776666766677777777777777766666666655666777
Q ss_pred EEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 441 RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 441 ~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+|++++|+. .+.+|. .++++++|+.+++..+
T Consensus 281 ~L~L~~n~~-~~~iP~---~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 281 KLDLRGCVN-LSRLPS---LIAQLPANCIILVPPH 311 (328)
T ss_dssp EEECTTCTT-CCCCCG---GGGGSCTTCEEECCGG
T ss_pred EEeCCCCCc-hhhccH---HHhhccCceEEeCCHH
Confidence 777777543 344443 4566677777777655
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=1.5e-20 Score=198.08 Aligned_cols=386 Identities=20% Similarity=0.221 Sum_probs=183.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++++.|++.+..-... .....+..+++|++|++++|. ++......+...+..+ ++|++|++++|......+.
T Consensus 3 ~~l~~L~Ls~~~l~~~---~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~----~~L~~L~Ls~n~l~~~~~~ 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA---RWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVN----PALAELNLRSNELGDVGVH 74 (461)
T ss_dssp EEEEEEEEESCCCCHH---HHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTC----TTCCEEECTTCCCHHHHHH
T ss_pred ccceehhhhhcccCch---hHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhC----CCcCEEeCCCCcCChHHHH
Confidence 3456666655443322 344457788889999998876 4432222222234444 7888999988775332222
Q ss_pred c-cCCCC----CccEEEEcCCCCCCC-----CC-CCCCCCCCcEEEccCCCCccccch-hhc---cCCCCCccEEEeccC
Q 007138 221 S-SLSLS----SLREIEICKCSSLVS-----FP-EVALPSKLKNIWISTCDALKSLPE-AWM---CDTNSSLEILSIHGC 285 (616)
Q Consensus 221 ~-~~~l~----~L~~L~l~~~~~l~~-----~~-~~~~~~~L~~L~l~~~~~l~~~~~-~~~---~~~~~~L~~L~l~~~ 285 (616)
. ...++ +|++|++++|. ++. ++ .+..+++|++|++++|. +.+... .+. ....++|++|++++|
T Consensus 75 ~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n 152 (461)
T 1z7x_W 75 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC 152 (461)
T ss_dssp HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC
Confidence 2 22344 68888888884 543 22 34557888888888877 433211 110 122356777777776
Q ss_pred CCCccccc------cCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccc
Q 007138 286 RSLTYIAA------VQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLE 359 (616)
Q Consensus 286 ~~l~~~~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 359 (616)
. +..... ....++|+.|+++++. ++...... +........++|++|++++| .++. .....++..+..+
T Consensus 153 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~-l~~~l~~~~~~L~~L~L~~n-~l~~-~~~~~l~~~l~~~- 226 (461)
T 1z7x_W 153 S-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRV-LCQGLKDSPCQLEALKLESC-GVTS-DNCRDLCGIVASK- 226 (461)
T ss_dssp C-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHH-HHHHHHHSCCCCCEEECTTS-CCBT-THHHHHHHHHHHC-
T ss_pred C-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHH-HHHHHhcCCCCceEEEccCC-CCcH-HHHHHHHHHHHhC-
Confidence 3 332110 1223566777766663 33221100 00000001235666666664 2221 0001122233333
Q ss_pred cCCCCCcccEEEecCCCCchhh----hh-hccCCCCccEEEccccccccc----ccccccCCCCCcEEEeccCCCCcc--
Q 007138 360 VGNLPPSLKSLYVYGCSKLESI----AE-RLDNNTSLETISIERCGNLKI----LPSGLHNLRQLQGIKIWNCGNLVS-- 428 (616)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l~~L~~L~l~~~~~~~~-- 428 (616)
++|++|++++|...+.- .. ....+++|+.|++++|..... ++..+..+++|++|++++|. +..
T Consensus 227 -----~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~ 300 (461)
T 1z7x_W 227 -----ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG 300 (461)
T ss_dssp -----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred -----CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH
Confidence 55666666665432211 11 122355666666666532221 34444455666666666552 221
Q ss_pred ---cCCCC-CCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCC
Q 007138 429 ---FPEGG-LPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCD 504 (616)
Q Consensus 429 ---~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 504 (616)
+.... .+.++|++|++++|. +++.... ..+..+..+++|++|++++|
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~---------------------------~l~~~l~~~~~L~~L~Ls~n- 351 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCS-FTAACCS---------------------------HFSSVLAQNRFLLELQISNN- 351 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH---------------------------HHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhccCCccceeeEcCCCC-CchHHHH---------------------------HHHHHHhhCCCccEEEccCC-
Confidence 11000 111255666666542 3332111 11112344456666666654
Q ss_pred CccccccccccccCCCCC-CCCccceEecccCcccc-----ccccccccCccccEEEecCCCCCcccCC-------CCCc
Q 007138 505 DDMVSFPLEDKRLGTALP-LPASLTTLWISRFPNLE-----RLSSSIVDLQNLTELVLVNCPKLKYFPE-------KGLP 571 (616)
Q Consensus 505 ~~l~~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~L~l~~c~~l~~l~~-------~~~~ 571 (616)
.+....... +...+. ..++|++|++++|. ++ .++..+..+++|++|++++ +.+..... ....
T Consensus 352 -~i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~-N~i~~~~~~~l~~~l~~~~ 426 (461)
T 1z7x_W 352 -RLEDAGVRE--LCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQLVESVRQPG 426 (461)
T ss_dssp -BCHHHHHHH--HHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHHHHHHTSTT
T ss_pred -ccccccHHH--HHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCC-CCCCHHHHHHHHHHhccCC
Confidence 222211100 000000 14567777777653 44 4555666677777777777 34443211 0112
Q ss_pred CCcceEEEcCC
Q 007138 572 SSLLQLQIYCC 582 (616)
Q Consensus 572 ~~L~~L~i~~c 582 (616)
.+|+.|++.++
T Consensus 427 ~~L~~L~~~~~ 437 (461)
T 1z7x_W 427 CLLEQLVLYDI 437 (461)
T ss_dssp CCCCEEECTTC
T ss_pred cchhheeeccc
Confidence 35666666654
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.4e-17 Score=167.16 Aligned_cols=289 Identities=16% Similarity=0.167 Sum_probs=153.3
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCcccc-chhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSL-PEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~ 278 (616)
.+++.++++++.. +.+|..+ .++|+.|++++|. ++.++ .+..+++|++|++++|. +..+ +..+ ..+++|+
T Consensus 33 c~l~~l~~~~~~l-~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~--~~l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDLGL-KAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF--SPLRKLQ 105 (332)
T ss_dssp EETTEEECCSSCC-SSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS--TTCTTCC
T ss_pred ccCCEEECCCCCc-cccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh--hCcCCCC
Confidence 4688999988764 6788765 4789999999984 66664 35668999999999887 4444 3332 5567888
Q ss_pred EEEeccCCCCccccccCCCCCccEEEEecCCCCCccccccc-ccccccccCCCccEEeccCCCCcccccccCCCcccccc
Q 007138 279 ILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEG-IQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLES 357 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~ 357 (616)
+|+++++. ++.++... .++|+.|+++++ .++.+ +.. +.. +
T Consensus 106 ~L~L~~n~-l~~l~~~~-~~~L~~L~l~~n-~i~~~--~~~~~~~-----l----------------------------- 146 (332)
T 2ft3_A 106 KLYISKNH-LVEIPPNL-PSSLVELRIHDN-RIRKV--PKGVFSG-----L----------------------------- 146 (332)
T ss_dssp EEECCSSC-CCSCCSSC-CTTCCEEECCSS-CCCCC--CSGGGSS-----C-----------------------------
T ss_pred EEECCCCc-CCccCccc-cccCCEEECCCC-ccCcc--CHhHhCC-----C-----------------------------
Confidence 88887753 44444322 256666666665 33333 211 111 3
Q ss_pred cccCCCCCcccEEEecCCCCch--hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC-CCCC
Q 007138 358 LEVGNLPPSLKSLYVYGCSKLE--SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-EGGL 434 (616)
Q Consensus 358 l~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 434 (616)
++|+.|++++|.... ..+..+..+ +|+.|++++|. ++.+|..+. ++|++|++++| .+..++ ....
T Consensus 147 -------~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~ 214 (332)
T 2ft3_A 147 -------RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLP--ETLNELHLDHN-KIQAIELEDLL 214 (332)
T ss_dssp -------SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSC--SSCSCCBCCSS-CCCCCCTTSST
T ss_pred -------ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcccc--CCCCEEECCCC-cCCccCHHHhc
Confidence 445555555443321 223333333 66666666654 334544332 56666666666 333333 3334
Q ss_pred CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccc
Q 007138 435 PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLED 514 (616)
Q Consensus 435 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~ 514 (616)
.+++|++|++++ +.+++..+. .+..+++|+.|++++|... ..+..+..+++|+.|++++| .++.++...
T Consensus 215 ~l~~L~~L~L~~-N~l~~~~~~---~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N--~l~~~~~~~ 283 (332)
T 2ft3_A 215 RYSKLYRLGLGH-NQIRMIENG---SLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTN--NITKVGVND 283 (332)
T ss_dssp TCTTCSCCBCCS-SCCCCCCTT---GGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSS--CCCBCCTTS
T ss_pred CCCCCCEEECCC-CcCCcCChh---HhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCC--CCCccChhH
Confidence 455667777766 355554332 2334444444444444311 11223455666666666665 444444322
Q ss_pred cccCCCCCCCCccceEecccCccc--cccccccccCccccEEEecCC
Q 007138 515 KRLGTALPLPASLTTLWISRFPNL--ERLSSSIVDLQNLTELVLVNC 559 (616)
Q Consensus 515 ~~~~~~~~~~~~L~~L~l~~c~~l--~~i~~~~~~~~~L~~L~l~~c 559 (616)
-.-.......++|+.|++.+++.. ...|..+..++.|+.++++++
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 000000011355666666665432 122334555666666666654
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=4.3e-17 Score=175.41 Aligned_cols=254 Identities=28% Similarity=0.346 Sum_probs=147.8
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+++.|+++++.. +.+|..+. ++|++|++++| .++.+|. .+++|++|++++|. ++.++. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L-~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCC-SCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCc-CccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC-----CCCCCCEEE
Confidence 3577777777664 56776554 67777777777 4666665 56777777777776 555553 346677777
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++ .++.++. .+++|+.|+++++ +++.+ +.. +++|++|+++++ .++. +|..+
T Consensus 108 Ls~N-~l~~l~~--~l~~L~~L~L~~N-~l~~l--p~~--------l~~L~~L~Ls~N-~l~~------l~~~~------ 160 (622)
T 3g06_A 108 IFSN-PLTHLPA--LPSGLCKLWIFGN-QLTSL--PVL--------PPGLQELSVSDN-QLAS------LPALP------ 160 (622)
T ss_dssp ECSC-CCCCCCC--CCTTCCEEECCSS-CCSCC--CCC--------CTTCCEEECCSS-CCSC------CCCCC------
T ss_pred CcCC-cCCCCCC--CCCCcCEEECCCC-CCCcC--CCC--------CCCCCEEECcCC-cCCC------cCCcc------
Confidence 7765 3555443 4567777777766 45544 332 245777777763 3332 11111
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceE
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR 441 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 441 (616)
++|+.|++++|... .+| ..+++|+.|++++|. ++.+|. .+++|+.|++++| .+..+|.. +++|++
T Consensus 161 ---~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~~---~~~L~~ 225 (622)
T 3g06_A 161 ---SELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPAL---PSGLKE 225 (622)
T ss_dssp ---TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCCC---CTTCCE
T ss_pred ---CCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCCC---CCCCCE
Confidence 56667777666433 344 345677777777654 344443 2356777777766 44555532 236777
Q ss_pred EEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCC
Q 007138 442 LDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTAL 521 (616)
Q Consensus 442 L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~ 521 (616)
|++++| .++++ | ..+++|+.|++++| .++.++.
T Consensus 226 L~Ls~N-~L~~l-p----------------------------------~~l~~L~~L~Ls~N--~L~~lp~--------- 258 (622)
T 3g06_A 226 LIVSGN-RLTSL-P----------------------------------VLPSELKELMVSGN--RLTSLPM--------- 258 (622)
T ss_dssp EECCSS-CCSCC-C----------------------------------CCCTTCCEEECCSS--CCSCCCC---------
T ss_pred EEccCC-ccCcC-C----------------------------------CCCCcCcEEECCCC--CCCcCCc---------
Confidence 777763 45442 1 22355666666654 4444444
Q ss_pred CCCCccceEecccCccccccccccccCccccEEEecC
Q 007138 522 PLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
.+++|+.|++++| .++.+|..+..+++|+.|++++
T Consensus 259 -~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 259 -LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp -CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred -ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence 2456666666663 4556665566666666666666
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=3.6e-18 Score=170.63 Aligned_cols=173 Identities=23% Similarity=0.314 Sum_probs=90.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccC---------CCCCcEEEeccCCCCcccCCCCCC
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHN---------LRQLQGIKIWNCGNLVSFPEGGLP 435 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~~ 435 (616)
++|++|++++|... .+|..+..+++|+.|++++|...+.+|..+.. +++|++|++++| .+..+|.....
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcC
Confidence 45555555555333 44545555555555555555555555443332 555555555554 33344444334
Q ss_pred CCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccccccccc
Q 007138 436 CAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDK 515 (616)
Q Consensus 436 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~ 515 (616)
+++|++|++++| .+++..+ .+..+++|++|++++| .....++...
T Consensus 205 l~~L~~L~L~~N-~l~~l~~--------------------------------~l~~l~~L~~L~Ls~n-~~~~~~p~~~- 249 (328)
T 4fcg_A 205 LQNLKSLKIRNS-PLSALGP--------------------------------AIHHLPKLEELDLRGC-TALRNYPPIF- 249 (328)
T ss_dssp CTTCCEEEEESS-CCCCCCG--------------------------------GGGGCTTCCEEECTTC-TTCCBCCCCT-
T ss_pred CCCCCEEEccCC-CCCcCch--------------------------------hhccCCCCCEEECcCC-cchhhhHHHh-
Confidence 445555555552 3333211 3445566666666663 3333444332
Q ss_pred ccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-CCcCCcceEEEc
Q 007138 516 RLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIY 580 (616)
Q Consensus 516 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~ 580 (616)
..+++|++|++++|+.++.+|..+..+++|++|++++|+.+..+|.. +.+++|+.+++.
T Consensus 250 ------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 250 ------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred ------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 24566666666666666666666666666666666666666666653 225556666554
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=1.7e-18 Score=171.94 Aligned_cols=57 Identities=12% Similarity=-0.005 Sum_probs=29.2
Q ss_pred cccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccC
Q 007138 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~ 423 (616)
+|++|++++|...+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 455555555544444444444443 555555555443344444555555555555554
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.5e-18 Score=172.80 Aligned_cols=159 Identities=13% Similarity=0.045 Sum_probs=92.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccc-cCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL-HNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......+..+ ..+++|++|++++| .+..++... .+++|++|+
T Consensus 120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~L~ 197 (317)
T 3o53_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLD 197 (317)
T ss_dssp SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEE
T ss_pred CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccc-ccccCCEEE
Confidence 344444444444333333344555667777777665443333433 35677777777776 345554333 245788888
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++ +.+++..+ .+..+++|+.|++++| .++.++... ..
T Consensus 198 Ls~-N~l~~l~~--------------------------------~~~~l~~L~~L~L~~N--~l~~l~~~~-------~~ 235 (317)
T 3o53_A 198 LSS-NKLAFMGP--------------------------------EFQSAAGVTWISLRNN--KLVLIEKAL-------RF 235 (317)
T ss_dssp CCS-SCCCEECG--------------------------------GGGGGTTCSEEECTTS--CCCEECTTC-------CC
T ss_pred CCC-CcCCcchh--------------------------------hhcccCcccEEECcCC--cccchhhHh-------hc
Confidence 887 45655433 2344566677777665 555555433 25
Q ss_pred CCccceEecccCccc-cccccccccCccccEEEecCCCCCcccCC
Q 007138 524 PASLTTLWISRFPNL-ERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
+++|+.|++++|+.. ..++..+..++.|+.+++.+++.++....
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 677777787775544 24555667777888887776666555443
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=164.71 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=42.9
Q ss_pred CCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
++|++|++++|.. +.++. .+..+++|++|++++| .++.++ .+..+++|++|++++|. ++.++.... ..+++|+
T Consensus 52 ~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWF-KPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHH-TTCTTCS
T ss_pred ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHh-CCCccCC
Confidence 5677777777664 44443 5666777777777766 344443 24446666666666665 334433211 2334444
Q ss_pred EEEecc
Q 007138 279 ILSIHG 284 (616)
Q Consensus 279 ~L~l~~ 284 (616)
+|++++
T Consensus 128 ~L~L~~ 133 (353)
T 2z80_A 128 FLNLLG 133 (353)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 444443
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=8.5e-18 Score=167.39 Aligned_cols=261 Identities=15% Similarity=0.177 Sum_probs=149.5
Q ss_pred EEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCC
Q 007138 146 LEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSL 225 (616)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l 225 (616)
+.+.+++.... ...+...+..+++|++|+++++. ++.+++. .+..+ ++|++|++++|.. +..+. +..+
T Consensus 12 l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~-~~~l 79 (317)
T 3o53_A 12 YKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNP-LSQISAA----DLAPF----TKLELLNLSSNVL-YETLD-LESL 79 (317)
T ss_dssp EEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSC-CCCCCHH----HHTTC----TTCCEEECTTSCC-EEEEE-ETTC
T ss_pred eeEeeccccch-hhhHHHHhccCCCCCEEECcCCc-cCcCCHH----HhhCC----CcCCEEECCCCcC-Ccchh-hhhc
Confidence 44444444433 22333444555666666666653 4443322 24444 5666666666554 32332 5566
Q ss_pred CCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEE
Q 007138 226 SSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSI 305 (616)
Q Consensus 226 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l 305 (616)
++|++|++++| .++.++ ..++|++|++++|. +..++. .. +++|+.|++
T Consensus 80 ~~L~~L~Ls~n-~l~~l~---~~~~L~~L~l~~n~-l~~~~~----~~-----------------------~~~L~~L~l 127 (317)
T 3o53_A 80 STLRTLDLNNN-YVQELL---VGPSIETLHAANNN-ISRVSC----SR-----------------------GQGKKNIYL 127 (317)
T ss_dssp TTCCEEECCSS-EEEEEE---ECTTCCEEECCSSC-CSEEEE----CC-----------------------CSSCEEEEC
T ss_pred CCCCEEECcCC-cccccc---CCCCcCEEECCCCc-cCCcCc----cc-----------------------cCCCCEEEC
Confidence 66666666665 244333 23556666665554 222221 11 334555555
Q ss_pred ecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhc
Q 007138 306 SDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERL 385 (616)
Q Consensus 306 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (616)
+++ .++.+. +..+.. +++|++|+++++ .++.+.+ ..+. ..+ ++|++|++++|.... ++. .
T Consensus 128 ~~N-~l~~~~-~~~~~~-----l~~L~~L~Ls~N-~l~~~~~-~~~~---~~l------~~L~~L~L~~N~l~~-~~~-~ 187 (317)
T 3o53_A 128 ANN-KITMLR-DLDEGC-----RSRVQYLDLKLN-EIDTVNF-AELA---ASS------DTLEHLNLQYNFIYD-VKG-Q 187 (317)
T ss_dssp CSS-CCCSGG-GBCTGG-----GSSEEEEECTTS-CCCEEEG-GGGG---GGT------TTCCEEECTTSCCCE-EEC-C
T ss_pred CCC-CCCCcc-chhhhc-----cCCCCEEECCCC-CCCcccH-HHHh---hcc------CcCCEEECCCCcCcc-ccc-c
Confidence 554 233320 112222 566777777763 3443111 1111 112 678888888875443 332 3
Q ss_pred cCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccc-cchhhhHhhhccc
Q 007138 386 DNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLE-GGFHRYMIALHNL 464 (616)
Q Consensus 386 ~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~l 464 (616)
..+++|+.|++++|. ++.+|..+..+++|++|++++| .+..+|.....+++|++|+++++ .++ +.+|. .+..+
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N-~~~~~~~~~---~~~~~ 261 (317)
T 3o53_A 188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN-GFHCGTLRD---FFSKN 261 (317)
T ss_dssp CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC-CCBHHHHHH---HHHTC
T ss_pred cccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC-CccCcCHHH---HHhcc
Confidence 347899999999876 5567667888999999999998 66678877767779999999995 455 54444 45677
Q ss_pred ccceeeecCCCh
Q 007138 465 TNLHSLYIGGNM 476 (616)
Q Consensus 465 ~~L~~L~l~~~~ 476 (616)
++|+.+++.++.
T Consensus 262 ~~L~~l~l~~~~ 273 (317)
T 3o53_A 262 QRVQTVAKQTVK 273 (317)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccceEEECCCch
Confidence 888888887554
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=5.3e-17 Score=171.16 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=108.2
Q ss_pred HhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCC
Q 007138 194 QQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDT 273 (616)
Q Consensus 194 l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 273 (616)
+..+...+++|++|++++|......|..++.+++|++|++++|. ++..+++..+++|++|++++|. +..++..
T Consensus 26 l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~----- 98 (487)
T 3oja_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG----- 98 (487)
T ss_dssp HHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-----
T ss_pred HHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-----
Confidence 44443334689999999987644455678889999999998884 5544446667777777777765 3332211
Q ss_pred CCCccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcc
Q 007138 274 NSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPA 353 (616)
Q Consensus 274 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 353 (616)
+ +|+.|++++| .+..+ +.. . +
T Consensus 99 -~-----------------------~L~~L~L~~N-~l~~~--~~~--~-----l------------------------- 119 (487)
T 3oja_A 99 -P-----------------------SIETLHAANN-NISRV--SCS--R-----G------------------------- 119 (487)
T ss_dssp -T-----------------------TCCEEECCSS-CCCCE--EEC--C-----C-------------------------
T ss_pred -C-----------------------CcCEEECcCC-cCCCC--Ccc--c-----c-------------------------
Confidence 2 3444444443 22221 000 0 1
Q ss_pred cccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccccc-CCCCCcEEEeccCCCCcccCCC
Q 007138 354 TLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLH-NLRQLQGIKIWNCGNLVSFPEG 432 (616)
Q Consensus 354 ~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~ 432 (616)
++|+.|++++|...+..|..+..+++|+.|++++|...+..|..+. .+++|+.|++++| .+..++..
T Consensus 120 -----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~ 187 (487)
T 3oja_A 120 -----------QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ 187 (487)
T ss_dssp -----------SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC
T ss_pred -----------CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-cccccccc
Confidence 4455555555554444455556666777777777665554555554 6777778887777 34444433
Q ss_pred CCCCCCceEEEccCCcccccchh
Q 007138 433 GLPCAKLRRLDISDCKRLEGGFH 455 (616)
Q Consensus 433 ~~~~~~L~~L~l~~c~~l~~~~~ 455 (616)
. .+++|++|++++ +.+++..|
T Consensus 188 ~-~l~~L~~L~Ls~-N~l~~~~~ 208 (487)
T 3oja_A 188 V-VFAKLKTLDLSS-NKLAFMGP 208 (487)
T ss_dssp C-CCTTCCEEECCS-SCCCEECG
T ss_pred c-cCCCCCEEECCC-CCCCCCCH
Confidence 2 345788888887 45666544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=6.3e-16 Score=161.35 Aligned_cols=198 Identities=20% Similarity=0.235 Sum_probs=108.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|. ++.++. .+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEe
Confidence 455555555554333333445555556666665543 333332 3455556666666555 23344332 2234456666
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++|+.+..+.+. .+.++++|+.|++++|... ....+..+++|++|++++| .++.++... +.
T Consensus 166 ~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~ 228 (440)
T 3zyj_A 166 DLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLR------EIPNLTPLIKLDELDLSGN--HLSAIRPGS------FQ 228 (440)
T ss_dssp ECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCS------SCCCCTTCSSCCEEECTTS--CCCEECTTT------TT
T ss_pred CCCCCCCcceeCcc---hhhcccccCeecCCCCcCc------cccccCCCcccCEEECCCC--ccCccChhh------hc
Confidence 66655555443332 3445556666666655422 1123556677777777775 454443221 23
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.+++|+.|+++++ .++.++. .+..+++|++|++++ ++++.++...+ +++|++|+++++|
T Consensus 229 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 5677777777773 4555543 566777777777777 57777766432 5677777777654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=5.5e-16 Score=162.40 Aligned_cols=198 Identities=22% Similarity=0.247 Sum_probs=100.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|. ++.++. .+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEE
Confidence 444444444443333333344445555555555543 222222 2444555555555554 23333332 2233455555
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++|+.++.+.+. .+..+++|+.|++++|... ....+..+++|++|++++| .+..++... +.
T Consensus 177 ~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~------~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~ 239 (452)
T 3zyi_A 177 DLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIK------DMPNLTPLVGLEELEMSGN--HFPEIRPGS------FH 239 (452)
T ss_dssp ECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCS------SCCCCTTCTTCCEEECTTS--CCSEECGGG------GT
T ss_pred eCCCCCCccccChh---hccCCCCCCEEECCCCccc------ccccccccccccEEECcCC--cCcccCccc------cc
Confidence 55555444443222 3444555555555555321 1123455667777777765 444443221 23
Q ss_pred CCCccceEecccCcccccc-ccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 523 LPASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.+++|+.|++++| .+..+ +..+..+++|++|++++ ++++.++...+ +++|++|+++++|
T Consensus 240 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 240 GLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCC
Confidence 5667777777763 34444 33566677777777777 56666666432 5677777777654
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1.7e-15 Score=162.96 Aligned_cols=131 Identities=29% Similarity=0.293 Sum_probs=62.1
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++|+.|.+.++.... ++. .+++|++|++++|. ++.++. .+++|++|++++|.. +.+|.
T Consensus 61 ~~L~~L~L~~N~l~~----lp~----~l~~L~~L~Ls~N~-l~~lp~------------~l~~L~~L~Ls~N~l-~~l~~ 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTS----LPA----LPPELRTLEVSGNQ-LTSLPV------------LPPGLLELSIFSNPL-THLPA 118 (622)
T ss_dssp TTCSEEEECSCCCSC----CCC----CCTTCCEEEECSCC-CSCCCC------------CCTTCCEEEECSCCC-CCCCC
T ss_pred CCCcEEEecCCCCCC----CCC----cCCCCCEEEcCCCc-CCcCCC------------CCCCCCEEECcCCcC-CCCCC
Confidence 456666665543322 111 34566666666543 443332 115566666665543 44443
Q ss_pred ccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCc
Q 007138 221 SSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSL 300 (616)
Q Consensus 221 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L 300 (616)
.+++|++|++++| .++.+|. .+++|++|++++|. +..++. ..++|+.|+++++ .++.++ ..+++|
T Consensus 119 ---~l~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~l~~-----~~~~L~~L~L~~N-~l~~l~--~~~~~L 183 (622)
T 3g06_A 119 ---LPSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQ-LASLPA-----LPSELCKLWAYNN-QLTSLP--MLPSGL 183 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSCCC--CCCTTC
T ss_pred ---CCCCcCEEECCCC-CCCcCCC--CCCCCCEEECcCCc-CCCcCC-----ccCCCCEEECCCC-CCCCCc--ccCCCC
Confidence 3455666666555 3444543 23556666665553 333332 1244555555543 233333 333445
Q ss_pred cEEEEecC
Q 007138 301 KQLSISDC 308 (616)
Q Consensus 301 ~~L~l~~~ 308 (616)
+.|++++|
T Consensus 184 ~~L~Ls~N 191 (622)
T 3g06_A 184 QELSVSDN 191 (622)
T ss_dssp CEEECCSS
T ss_pred cEEECCCC
Confidence 55555444
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=1e-15 Score=154.93 Aligned_cols=253 Identities=17% Similarity=0.131 Sum_probs=135.4
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCccccc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQ 220 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~ 220 (616)
++|+.|.+.+..-.. .+...+..+++|++|+++++. ++.+++. .+..+ ++|++|++++|.. +.+|.
T Consensus 52 ~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~-l~~~~~~----~~~~l----~~L~~L~Ls~n~l-~~~~~ 117 (353)
T 2z80_A 52 EAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNG-INTIEED----SFSSL----GSLEHLDLSYNYL-SNLSS 117 (353)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC-CCEECTT----TTTTC----TTCCEEECCSSCC-SSCCH
T ss_pred ccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCc-cCccCHh----hcCCC----CCCCEEECCCCcC-CcCCH
Confidence 466666666544322 344455667777777777653 4444332 23444 6677777777655 44444
Q ss_pred c-cCCCCCccEEEEcCCCCCCCCCC---CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccc--c
Q 007138 221 S-SLSLSSLREIEICKCSSLVSFPE---VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAA--V 294 (616)
Q Consensus 221 ~-~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~ 294 (616)
. ++.+++|++|++++| .++.++. +..+++|++|++++|..+..++.... ..+++|++|+++++. +..+.. .
T Consensus 118 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~l 194 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF-AGLTFLEELEIDASD-LQSYEPKSL 194 (353)
T ss_dssp HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-TTCCEEEEEEEEETT-CCEECTTTT
T ss_pred hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHc-cCCCCCCEEECCCCC-cCccCHHHH
Confidence 3 666777777777776 3555554 34467777777776654544432211 344666666666553 333211 1
Q ss_pred CCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecC
Q 007138 295 QLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYG 374 (616)
Q Consensus 295 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~ 374 (616)
..+++|+.|+++++. ++.+ +..... .+++|++|++++
T Consensus 195 ~~l~~L~~L~l~~n~-l~~~--~~~~~~----~~~~L~~L~L~~------------------------------------ 231 (353)
T 2z80_A 195 KSIQNVSHLILHMKQ-HILL--LEIFVD----VTSSVECLELRD------------------------------------ 231 (353)
T ss_dssp TTCSEEEEEEEECSC-STTH--HHHHHH----HTTTEEEEEEES------------------------------------
T ss_pred hccccCCeecCCCCc-cccc--hhhhhh----hcccccEEECCC------------------------------------
Confidence 334455555555552 3332 211110 134455555544
Q ss_pred CCCchhhhh---hccCCCCccEEEccccccc----ccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccC
Q 007138 375 CSKLESIAE---RLDNNTSLETISIERCGNL----KILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISD 446 (616)
Q Consensus 375 ~~~~~~~~~---~~~~~~~L~~L~l~~~~~l----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~ 446 (616)
|...+..+. .....+.++.++++++... ..+|..+..+++|+.|++++| .+..+|... ..+++|++|++++
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 322211110 0112335555555554322 235666777888888888887 556777664 4566888888888
Q ss_pred Ccccccchh
Q 007138 447 CKRLEGGFH 455 (616)
Q Consensus 447 c~~l~~~~~ 455 (616)
+ .+++..|
T Consensus 311 N-~~~~~~~ 318 (353)
T 2z80_A 311 N-PWDCSCP 318 (353)
T ss_dssp S-CBCCCHH
T ss_pred C-CccCcCC
Confidence 4 5655544
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.9e-15 Score=158.28 Aligned_cols=220 Identities=18% Similarity=0.206 Sum_probs=118.1
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
+++++|++++|......+..++.+++|++|++++| .++.++ .+..+++|++|++++|. +..++.... ..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCCCE
Confidence 34444454444432222334444445555555444 233332 22234445555554443 333332211 23344455
Q ss_pred EEeccCCCCcccccc--CCCCCccEEEEecCCCCCcccccc-cccccccccCCCccEEeccCCCCcccccccCCCccccc
Q 007138 280 LSIHGCRSLTYIAAV--QLPPSLKQLSISDCDNIRTLTVEE-GIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLE 356 (616)
Q Consensus 280 L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~ 356 (616)
|+++++. +..++.. ..+++|+.|++++|..++.+ +. .+.. +++|++|+++++ +++.+ + .+.
T Consensus 152 L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i--~~~~~~~-----l~~L~~L~L~~n-~l~~~-~------~~~ 215 (452)
T 3zyi_A 152 LWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYI--SEGAFEG-----LFNLKYLNLGMC-NIKDM-P------NLT 215 (452)
T ss_dssp EECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEE--CTTTTTT-----CTTCCEEECTTS-CCSSC-C------CCT
T ss_pred EECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcccc--ChhhccC-----CCCCCEEECCCC-ccccc-c------ccc
Confidence 5544432 3333321 23445555555555555444 22 1222 566777777763 33331 1 122
Q ss_pred ccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CC
Q 007138 357 SLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LP 435 (616)
Q Consensus 357 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~ 435 (616)
.+ ++|+.|++++|...+..+..+..+++|+.|++++|......+..+..+++|+.|++++| .+..++... ..
T Consensus 216 ~l------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 288 (452)
T 3zyi_A 216 PL------VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTP 288 (452)
T ss_dssp TC------TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTT
T ss_pred cc------ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhcc
Confidence 22 67888888888766666777778888888888887755555666778888888888887 555665544 34
Q ss_pred CCCceEEEccCC
Q 007138 436 CAKLRRLDISDC 447 (616)
Q Consensus 436 ~~~L~~L~l~~c 447 (616)
+++|+.|+++++
T Consensus 289 l~~L~~L~L~~N 300 (452)
T 3zyi_A 289 LRYLVELHLHHN 300 (452)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEEccCC
Confidence 567888888874
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.1e-15 Score=151.48 Aligned_cols=200 Identities=22% Similarity=0.189 Sum_probs=114.7
Q ss_pred CcccEEEecCCCCch--hhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC--CCCCCCCce
Q 007138 365 PSLKSLYVYGCSKLE--SIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE--GGLPCAKLR 440 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~ 440 (616)
++|++|++++|.... ..+..+..+++|+.|++++|. +..++..+..+++|++|++++| .+..++. ....+++|+
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCC
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCC
Confidence 444445554443221 112333445566666666554 3345555555666666666655 3333332 233444666
Q ss_pred EEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCC
Q 007138 441 RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTA 520 (616)
Q Consensus 441 ~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~ 520 (616)
+|++++| .+++..+. .+..+++|+.|++++|.... ...+..+..+++|++|++++| .++.++...
T Consensus 130 ~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~------ 194 (306)
T 2z66_A 130 YLDISHT-HTRVAFNG---IFNGLSSLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQC--QLEQLSPTA------ 194 (306)
T ss_dssp EEECTTS-CCEECSTT---TTTTCTTCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTS--CCCEECTTT------
T ss_pred EEECCCC-cCCccchh---hcccCcCCCEEECCCCcccc---ccchhHHhhCcCCCEEECCCC--CcCCcCHHH------
Confidence 6666663 34444332 34555666666666654211 112345677888888888886 555553221
Q ss_pred CCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCC---CcCCcceEEEcCCc
Q 007138 521 LPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKG---LPSSLLQLQIYCCP 583 (616)
Q Consensus 521 ~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~ 583 (616)
+..+++|++|++++| .++.++. .+..+++|++|++++ +.+...+... .+++|++|++++++
T Consensus 195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTT-SCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCC-CCCcccCHHHHHhhhccCCEEEccCCC
Confidence 235788899999884 4666654 577788999999998 5666654432 23588999998875
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5.6e-16 Score=151.81 Aligned_cols=201 Identities=19% Similarity=0.235 Sum_probs=113.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc-CCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 443 (616)
+++++|+++++......+..+..+++|+.|++++|......+..+..+++|++|++++|..+..+ +.....+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45555555555443333334555566666666665433333445556666666666665434444 22233445666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++| .+++..+. .+.++++|+.|++++|... ......+..+++|++|++++| .++.++... +..
T Consensus 112 l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~------~~~ 175 (285)
T 1ozn_A 112 LDRC-GLQELGPG---LFRGLAALQYLYLQDNALQ----ALPDDTFRDLGNLTHLFLHGN--RISSVPERA------FRG 175 (285)
T ss_dssp CTTS-CCCCCCTT---TTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSS--CCCEECTTT------TTT
T ss_pred CCCC-cCCEECHh---HhhCCcCCCEEECCCCccc----ccCHhHhccCCCccEEECCCC--cccccCHHH------hcC
Confidence 6653 44444332 3455566666666655421 111223566777777777775 555555431 235
Q ss_pred CCccceEecccCcccccc-ccccccCccccEEEecCCCCCcccCCC--CCcCCcceEEEcCCc
Q 007138 524 PASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEK--GLPSSLLQLQIYCCP 583 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 583 (616)
+++|++|++++|. +..+ |..+..+++|++|++++ +.++.++.. ..+++|++|++++++
T Consensus 176 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 176 LHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCEEECCCCc-ccccCHhHccCcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 6778888888744 4444 55677777888888887 566666642 335778888887765
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=4e-15 Score=155.28 Aligned_cols=224 Identities=17% Similarity=0.234 Sum_probs=173.2
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 443 (616)
++++.|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceee
Confidence 67899999998766655677889999999999998755444567899999999999998 66677664 44567999999
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++ +.++...+. .+.++++|+.|+++++.... ......+..+++|++|++++| .++.++... .
T Consensus 143 L~~-N~i~~~~~~---~~~~l~~L~~L~l~~~~~l~---~i~~~~~~~l~~L~~L~L~~n--~l~~~~~~~--------~ 205 (440)
T 3zyj_A 143 LRN-NPIESIPSY---AFNRIPSLRRLDLGELKRLS---YISEGAFEGLSNLRYLNLAMC--NLREIPNLT--------P 205 (440)
T ss_dssp CCS-CCCCEECTT---TTTTCTTCCEEECCCCTTCC---EECTTTTTTCSSCCEEECTTS--CCSSCCCCT--------T
T ss_pred CCC-CcccccCHH---HhhhCcccCEeCCCCCCCcc---eeCcchhhcccccCeecCCCC--cCccccccC--------C
Confidence 999 567766543 67889999999999854211 122335788999999999997 777777543 6
Q ss_pred CCccceEecccCcccccc-ccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCchhhhhhhcCCCCccccc
Q 007138 524 PASLTTLWISRFPNLERL-SSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCPLIAEKCRKDGGQYWDLL 600 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i 600 (616)
+++|++|++++| .++.+ +..+..+++|++|++++ +.++.++...+ +++|++|++++|. +... ....+..+
T Consensus 206 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~----~~~~~~~l 278 (440)
T 3zyj_A 206 LIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAHNN-LTLL----PHDLFTPL 278 (440)
T ss_dssp CSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCCEEECTTSC-CCCC----CTTTTSSC
T ss_pred CcccCEEECCCC-ccCccChhhhccCccCCEEECCC-CceeEEChhhhcCCCCCCEEECCCCC-CCcc----ChhHhccc
Confidence 899999999995 57766 55888999999999999 78888877543 7899999999985 3221 12224557
Q ss_pred CCccEEEEcCeec
Q 007138 601 THIPHVVIDDKRV 613 (616)
Q Consensus 601 ~~i~~~~~~~~~~ 613 (616)
.++..+.+.++.+
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 7888888877754
No 68
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=2.8e-15 Score=148.44 Aligned_cols=53 Identities=28% Similarity=0.394 Sum_probs=31.8
Q ss_pred cEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccC
Q 007138 229 REIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGC 285 (616)
Q Consensus 229 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 285 (616)
+.++.+++ .++.+|. ...++|++|++++|. ++.++.... ..+++|++|+++++
T Consensus 10 ~~l~c~~~-~l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n 62 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPT-GIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSN 62 (306)
T ss_dssp TEEECCSS-CCSSCCS-CCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSS
T ss_pred CEEEcCCC-CcccCCC-CCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCC
Confidence 35566654 4666664 335678888887776 555554321 34566666666654
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.1e-15 Score=141.48 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=107.1
Q ss_pred CcccEEEecCCCCchhhhh-hccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCCCCCCCce--
Q 007138 365 PSLKSLYVYGCSKLESIAE-RLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLR-- 440 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~-- 440 (616)
++|++|++++|..++.++. .+..+++|+.|++++|..++.++ ..+..+++|++|++++| .+..+|. ...+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L 132 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIF 132 (239)
T ss_dssp TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSE
T ss_pred CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCccccc-cccccccccc
Confidence 4455555555432333332 34455555555555533344443 23455555555555555 2334443 22333444
Q ss_pred -EEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCcc-EEEEecCCCccccccccccccC
Q 007138 441 -RLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLR-HLTIRGCDDDMVSFPLEDKRLG 518 (616)
Q Consensus 441 -~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~i~~~~~~l~~l~~~~~~~~ 518 (616)
+|++++++.++++.+ ..+..+++|+ +|++++| .++.++...
T Consensus 133 ~~L~l~~N~~l~~i~~-------------------------------~~~~~l~~L~~~L~l~~n--~l~~i~~~~---- 175 (239)
T 2xwt_C 133 FILEITDNPYMTSIPV-------------------------------NAFQGLCNETLTLKLYNN--GFTSVQGYA---- 175 (239)
T ss_dssp EEEEEESCTTCCEECT-------------------------------TTTTTTBSSEEEEECCSC--CCCEECTTT----
T ss_pred cEEECCCCcchhhcCc-------------------------------ccccchhcceeEEEcCCC--CCcccCHhh----
Confidence 555555334443322 2467788888 8999886 666666643
Q ss_pred CCCCCCCccceEecccCcccccccc-ccccC-ccccEEEecCCCCCcccCCCCCcCCcceEEEcCCchh
Q 007138 519 TALPLPASLTTLWISRFPNLERLSS-SIVDL-QNLTELVLVNCPKLKYFPEKGLPSSLLQLQIYCCPLI 585 (616)
Q Consensus 519 ~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 585 (616)
+ ..++|++|++++|+.++.++. .+..+ ++|++|++++ +.++.+|.. .+++|++|++.+++.+
T Consensus 176 --~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 176 --F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp --T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred --c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 1 237899999999656888865 57778 9999999999 888888876 5688999999887653
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=2.3e-15 Score=158.64 Aligned_cols=190 Identities=14% Similarity=0.065 Sum_probs=114.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|++|++++|...+..+ +..+++|+.|++++|. ++.++ ..++|+.|++++| .+..++...+ ++|+.|++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L~L~~N-~l~~~~~~~l--~~L~~L~L 127 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANN-NISRVSCSRG--QGKKNIYL 127 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSS-CCCCEEECCC--SSCEEEEC
T ss_pred CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCC----CCCCcCEEECcCC-cCCCCCcccc--CCCCEEEC
Confidence 566666666665443333 5566667777776654 33333 2266777777666 3444443333 36777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccc-cccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGF-HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
++ +.+++..|. .++.+++|+.|++++|.... ..+..+ ..+++|++|++++| .+..++... .
T Consensus 128 ~~-N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~~L~Ls~N--~l~~~~~~~--------~ 189 (487)
T 3oja_A 128 AN-NKITMLRDL---DEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHLNLQYN--FIYDVKGQV--------V 189 (487)
T ss_dssp CS-SCCCSGGGB---CGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCCEEECTTS--CCCEEECCC--------C
T ss_pred CC-CCCCCCCch---hhcCCCCCCEEECCCCCCCC----cChHHHhhhCCcccEEecCCC--ccccccccc--------c
Confidence 66 356555443 34556677777777664221 111122 25677777777776 455554433 4
Q ss_pred CCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC-CCcCCcceEEEcCCch
Q 007138 524 PASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK-GLPSSLLQLQIYCCPL 584 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~ 584 (616)
+++|+.|++++ +.++.+|+.+..+++|+.|++++ +.+..+|.. ..+++|+.|++++|+.
T Consensus 190 l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 190 FAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCC
Confidence 67778888877 45666766677777788888877 667777764 3357777787777653
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=1.4e-14 Score=141.74 Aligned_cols=173 Identities=21% Similarity=0.206 Sum_probs=101.8
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++++.|++++|......+..+..+++|+.|++++|. ++.++.. ..+++|+.|++++| .+..+|.....+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEEC
Confidence 567777887776655555667777888888888765 4445433 67778888888877 55667766556667888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.+++..+. .+..+++|++|++++| .++.++... +..+
T Consensus 108 ~~-N~l~~l~~~-------------------------------~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l 147 (290)
T 1p9a_G 108 SF-NRLTSLPLG-------------------------------ALRGLGELQELYLKGN--ELKTLPPGL------LTPT 147 (290)
T ss_dssp CS-SCCCCCCSS-------------------------------TTTTCTTCCEEECTTS--CCCCCCTTT------TTTC
T ss_pred CC-CcCcccCHH-------------------------------HHcCCCCCCEEECCCC--CCCccChhh------cccc
Confidence 77 456554432 3344555555555554 344443321 1234
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC-cCCcceEEEcCC
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL-PSSLLQLQIYCC 582 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~L~~L~i~~c 582 (616)
++|+.|++++ +.++.+|. .+..+++|++|++++ +.++.+|.... .++|+.++++++
T Consensus 148 ~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 148 PKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred cCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 5555555555 34555554 234455555555555 45555555322 345555555544
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=6e-16 Score=153.59 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred cccCCccEEEEecCCCcccccc-ccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFP-LEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
..+++|++|++++| .+...+ ... +..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|..
T Consensus 225 ~~l~~L~~L~Ls~N--~l~~~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~ 292 (312)
T 1wwl_A 225 AARVQLQGLDLSHN--SLRDAAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSP 292 (312)
T ss_dssp HTTCCCSEEECTTS--CCCSSCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCT
T ss_pred hcCCCCCEEECCCC--cCCcccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhH
Confidence 34567777777765 444432 111 11356777777777 34667765444 6777777777 677777664
Q ss_pred CCcCCcceEEEcCCc
Q 007138 569 GLPSSLLQLQIYCCP 583 (616)
Q Consensus 569 ~~~~~L~~L~i~~c~ 583 (616)
..+++|++|++++++
T Consensus 293 ~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 293 DELPQVGNLSLKGNP 307 (312)
T ss_dssp TTSCEEEEEECTTCT
T ss_pred hhCCCCCEEeccCCC
Confidence 446777777777665
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=1.5e-14 Score=137.49 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCcc---EEEcccccccccccc-cccCCCCCc-EEEeccCCCCcccCCCCCCCCCc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLE---TISIERCGNLKILPS-GLHNLRQLQ-GIKIWNCGNLVSFPEGGLPCAKL 439 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~-~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L 439 (616)
++|++|++++|... .+|. +..+++|+ .|++++|..++.++. .+..+++|+ .|++++| .+..+|...+..++|
T Consensus 105 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 105 PLLKFLGIFNTGLK-MFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL 181 (239)
T ss_dssp TTCCEEEEEEECCC-SCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred CCCCEEeCCCCCCc-cccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence 44455555544322 2333 44444554 666666534444443 355666666 6666665 344555544443456
Q ss_pred eEEEccCCccccc
Q 007138 440 RRLDISDCKRLEG 452 (616)
Q Consensus 440 ~~L~l~~c~~l~~ 452 (616)
++|++++|..+++
T Consensus 182 ~~L~L~~n~~l~~ 194 (239)
T 2xwt_C 182 DAVYLNKNKYLTV 194 (239)
T ss_dssp EEEECTTCTTCCE
T ss_pred CEEEcCCCCCccc
Confidence 6666666433543
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=8.3e-14 Score=136.26 Aligned_cols=82 Identities=18% Similarity=0.292 Sum_probs=46.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++| .+..++.. ...+++|++|+
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEe
Confidence 45555555555333222223555667777777776644444566666777777777776 34444322 23445777777
Q ss_pred ccCC
Q 007138 444 ISDC 447 (616)
Q Consensus 444 l~~c 447 (616)
++++
T Consensus 232 l~~N 235 (285)
T 1ozn_A 232 LNDN 235 (285)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7773
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=7.8e-15 Score=142.88 Aligned_cols=199 Identities=18% Similarity=0.147 Sum_probs=103.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccC-CCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFP-EGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 443 (616)
+++++|++++|...+..+..+..+++|+.|++++|......+..+..+++|++|++++|. +..++ .....+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEE
Confidence 445666666554433323345555666666666654322222345556666666666653 33333 2233445666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++| .+++..+. .++++++|+.|++++|.... ...+..+..+++|++|++++| .++.++... +..
T Consensus 107 l~~n-~l~~~~~~---~~~~l~~L~~L~l~~n~l~~---~~l~~~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~ 171 (276)
T 2z62_A 107 AVET-NLASLENF---PIGHLKTLKELNVAHNLIQS---FKLPEYFSNLTNLEHLDLSSN--KIQSIYCTD------LRV 171 (276)
T ss_dssp CTTS-CCCCSTTC---CCTTCTTCCEEECCSSCCCC---CCCCGGGGGCTTCCEEECCSS--CCCEECGGG------GHH
T ss_pred CCCC-CccccCch---hcccCCCCCEEECcCCccce---ecCchhhccCCCCCEEECCCC--CCCcCCHHH------hhh
Confidence 6653 34443221 24555666666666554211 001234556677777777765 444443321 012
Q ss_pred CCccc----eEecccCccccccccccccCccccEEEecCCCCCcccCCCC--CcCCcceEEEcC
Q 007138 524 PASLT----TLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYC 581 (616)
Q Consensus 524 ~~~L~----~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~ 581 (616)
+++|+ .|++++ +.++.++.......+|++|++++ +.++.++... .+++|++|++++
T Consensus 172 l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 172 LHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp HHTCTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCS-SCCSCCCTTTTTTCCSCCEEECCS
T ss_pred hhhccccceeeecCC-CcccccCccccCCCcccEEECCC-CceeecCHhHhcccccccEEEccC
Confidence 33344 667776 44666655444455677777777 5566666642 256777777774
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=4.2e-14 Score=142.66 Aligned_cols=150 Identities=19% Similarity=0.153 Sum_probs=92.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCC-CCCcEEEeccCCCCcccCCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNL-RQLQGIKIWNCGNLVSFPEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 442 (616)
++|++|++++|......+..+....++..+++.++..+..++. .+..+ ..++.|++++| .++.++...+...+|+.+
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l 182 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDEL 182 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEE
T ss_pred cccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHH
Confidence 4444444444432221122223334566666666666666554 23333 35777888776 567777777766678888
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++.+++.++.+.++ .+..+++|++|++++| .++.+|...
T Consensus 183 ~l~~~n~l~~i~~~-------------------------------~f~~l~~L~~LdLs~N--~l~~lp~~~-------- 221 (350)
T 4ay9_X 183 NLSDNNNLEELPND-------------------------------VFHGASGPVILDISRT--RIHSLPSYG-------- 221 (350)
T ss_dssp ECTTCTTCCCCCTT-------------------------------TTTTEECCSEEECTTS--CCCCCCSSS--------
T ss_pred hhccCCcccCCCHH-------------------------------HhccCcccchhhcCCC--CcCccChhh--------
Confidence 88877777654332 4566677777777775 666666543
Q ss_pred CCCccceEecccCccccccccccccCccccEEEecC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
+.+|+.|.+.++++++.+| .+..+++|+.+++.+
T Consensus 222 -~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 222 -LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp -CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred -hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 5677777777777777777 466777777777754
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=7.7e-14 Score=135.24 Aligned_cols=175 Identities=23% Similarity=0.282 Sum_probs=92.4
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccc-ccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG-LHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
+++++|+++++......+..+..+++|+.|++++|. ++.++.. +..+++|++|++++| .+..++... ..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 456666666664433333345666677777776654 3344433 356677777777766 344444433 344567777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++ +.+++..+. .+..+++|++|++++| .++.++... +.
T Consensus 115 ~l~~-n~l~~~~~~-------------------------------~~~~l~~L~~L~Ls~n--~l~~~~~~~------~~ 154 (270)
T 2o6q_A 115 RLDR-NQLKSLPPR-------------------------------VFDSLTKLTYLSLGYN--ELQSLPKGV------FD 154 (270)
T ss_dssp ECCS-SCCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCCCCCTTT------TT
T ss_pred ECCC-CccCeeCHH-------------------------------HhCcCcCCCEEECCCC--cCCccCHhH------cc
Confidence 7766 345444332 2344555555555554 344443321 12
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.+++|++|++++| .++.++. .+..+++|++|++++ +.++.++...+ +++|++|+++++|
T Consensus 155 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCC-cCcEeChhHhccCCCcCEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 3555566666552 3444443 345555666666665 35555554322 4556666665543
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=143.47 Aligned_cols=207 Identities=18% Similarity=0.124 Sum_probs=116.4
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCC-----CCccEEEccccccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNN-----TSLETISIERCGNL 402 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~l 402 (616)
+++|++|+++++ .++...+...+. ..+ ++|++|++++|...+. |..+..+ ++|+.|++++|...
T Consensus 94 l~~L~~L~L~~n-~l~~~~~~~~~~---~~l------~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 94 ISGLQELTLENL-EVTGTAPPPLLE---ATG------PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp TSCCCEEEEEEE-BCBSCCCCCSSS---CCS------CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred cCCccEEEccCC-cccchhHHHHHH---hcC------CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 577777777773 333212221110 222 6777777777755443 4444433 67777777776644
Q ss_pred ccccccccCCCCCcEEEeccCCCCcc--cCCCC--CCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHH
Q 007138 403 KILPSGLHNLRQLQGIKIWNCGNLVS--FPEGG--LPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEI 478 (616)
Q Consensus 403 ~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 478 (616)
+..+..+..+++|++|++++|..... ++... ..+++|++|++++| .+++........+.++++|+.|++++|...
T Consensus 163 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCC
T ss_pred cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 44445667777777777777643322 11111 33447777777773 455321111123456677777777777522
Q ss_pred HHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecC
Q 007138 479 WKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 479 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
. ......+..+++|++|++++| .++.+|... .++|++|++++ +.++.+|. +..+++|++|++++
T Consensus 242 ~---~~~~~~~~~l~~L~~L~Ls~N--~l~~ip~~~---------~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 242 D---AAGAPSCDWPSQLNSLNLSFT--GLKQVPKGL---------PAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp S---SCCCSCCCCCTTCCEEECTTS--CCSSCCSSC---------CSEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT
T ss_pred c---ccchhhhhhcCCCCEEECCCC--ccChhhhhc---------cCCceEEECCC-CCCCCChh-HhhCCCCCEEeccC
Confidence 1 000123344667777777775 555665543 26777777777 45666664 66777777777777
Q ss_pred CCCCc
Q 007138 559 CPKLK 563 (616)
Q Consensus 559 c~~l~ 563 (616)
+.++
T Consensus 306 -N~l~ 309 (312)
T 1wwl_A 306 -NPFL 309 (312)
T ss_dssp -CTTT
T ss_pred -CCCC
Confidence 4444
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=4.5e-15 Score=149.12 Aligned_cols=200 Identities=17% Similarity=0.238 Sum_probs=89.0
Q ss_pred CCCcEEEccCCCCCcccccccCCC--CCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccc--cchhhccCCCCCc
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSL--SSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKS--LPEAWMCDTNSSL 277 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L 277 (616)
..++.++++++... +..+..+ ++++.|+++++......+....+++|++|++++|. +.. ++..+ ..+++|
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~--~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGIL--SQCSKL 120 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHH--TTBCCC
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHH--hhCCCC
Confidence 34666666665432 2333334 56666666665322233344456666777766665 322 22221 344566
Q ss_pred cEEEeccCCCCcc-cc-ccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccc
Q 007138 278 EILSIHGCRSLTY-IA-AVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355 (616)
Q Consensus 278 ~~L~l~~~~~l~~-~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 355 (616)
++|++++|. +.. .+ ....+++|+.|++++|..++...++..+.. +++|++|++++|..+++ ..++..+
T Consensus 121 ~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~-----~~~L~~L~l~~~~~l~~----~~~~~~~ 190 (336)
T 2ast_B 121 QNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS-----CSRLDELNLSWCFDFTE----KHVQVAV 190 (336)
T ss_dssp SEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH-----CTTCCEEECCCCTTCCH----HHHHHHH
T ss_pred CEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc-----CCCCCEEcCCCCCCcCh----HHHHHHH
Confidence 666666553 221 11 112344555555555544443211222222 44555555555434332 0111112
Q ss_pred cccccCCCCC-cccEEEecCCC--Cc-hhhhhhccCCCCccEEEccccccc-ccccccccCCCCCcEEEeccC
Q 007138 356 ESLEVGNLPP-SLKSLYVYGCS--KL-ESIAERLDNNTSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 356 ~~l~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~l~~l~~L~~L~l~~~ 423 (616)
..+ + +|++|++++|. .. ..++..+..+++|+.|++++|..+ ...+..+..+++|++|++++|
T Consensus 191 ~~l------~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 191 AHV------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHS------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred Hhc------ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 222 3 45555555542 11 233333444455555555554422 223334444445555555444
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=5.7e-14 Score=138.86 Aligned_cols=195 Identities=16% Similarity=0.156 Sum_probs=140.1
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS 407 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 407 (616)
+++|++|+++++ .++. ++ .+..+ ++|++|++++|... .++. +..+++|+.|++++|. ++.++
T Consensus 40 l~~L~~L~l~~~-~i~~------l~-~~~~l------~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~-l~~~~- 101 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTT------IE-GVQYL------NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNP-LKNVS- 101 (308)
T ss_dssp HHTCCEEECTTS-CCCC------CT-TGGGC------TTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCC-CSCCG-
T ss_pred cCCcCEEEeeCC-CccC------ch-hhhcc------CCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCc-CCCch-
Confidence 688999999885 3443 11 23333 88999999988544 4444 7888899999999876 55554
Q ss_pred cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCc
Q 007138 408 GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR 487 (616)
Q Consensus 408 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 487 (616)
.+..+++|++|++++| .+..++. ...+++|++|++++| .+++..+ +..+++|+.|++++|.... ..
T Consensus 102 ~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~l~~n~l~~------~~ 167 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDLN-QITNISP-----LAGLTNLQYLSIGNAQVSD------LT 167 (308)
T ss_dssp GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECCSSCCCC------CG
T ss_pred hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCCC-ccCcCcc-----ccCCCCccEEEccCCcCCC------Ch
Confidence 5788899999999988 4555554 445568999999884 6666533 6788888999988885321 12
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+..+++|++|++++| .++.++... .+++|++|++++| .+..++ .+..+++|+.|++++ +.+...|.
T Consensus 168 ~l~~l~~L~~L~l~~n--~l~~~~~l~--------~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~-N~i~~~~~ 234 (308)
T 1h6u_A 168 PLANLSKLTTLKADDN--KISDISPLA--------SLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN-QTITNQPV 234 (308)
T ss_dssp GGTTCTTCCEEECCSS--CCCCCGGGG--------GCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE-EEEECCCE
T ss_pred hhcCCCCCCEEECCCC--ccCcChhhc--------CCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccC-CeeecCCe
Confidence 3677888889998886 566665533 5788899999884 577776 477888889998888 55666544
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=2.2e-13 Score=137.40 Aligned_cols=223 Identities=20% Similarity=0.194 Sum_probs=132.2
Q ss_pred CCCcEEEccCCCCCccccc-ccCCCCCccEEEEcCCCCCCCCCC--CCCCCCCcEEEccCCCCccccchhhccCCCCCcc
Q 007138 202 CRLEYLRLSNCEGLVKLPQ-SSLSLSSLREIEICKCSSLVSFPE--VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLE 278 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 278 (616)
+++++|++++|.. +.+|. .|+++++|++|++++|...+.++. +..+++++.+...++..+..++.... ..+++|+
T Consensus 30 ~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB-CCCTTCC
T ss_pred CCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh-hhccccc
Confidence 5667777776654 55554 456667777777766644444442 22345555443333333444432211 2334445
Q ss_pred EEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCccccccc
Q 007138 279 ILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESL 358 (616)
Q Consensus 279 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l 358 (616)
.|++ +++ .++.+ +.... ....++..+++.++..+.. .+...+...
T Consensus 108 ~L~l-----------------------~~n-~l~~~--~~~~~----~~~~~l~~l~l~~~~~i~~-l~~~~f~~~---- 152 (350)
T 4ay9_X 108 YLLI-----------------------SNT-GIKHL--PDVHK----IHSLQKVLLDIQDNINIHT-IERNSFVGL---- 152 (350)
T ss_dssp EEEE-----------------------EEE-CCSSC--CCCTT----CCBSSCEEEEEESCTTCCE-ECTTSSTTS----
T ss_pred cccc-----------------------ccc-ccccC--Cchhh----cccchhhhhhhcccccccc-ccccchhhc----
Confidence 4444 444 22222 11100 0123455566655555554 222222111
Q ss_pred ccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCC
Q 007138 359 EVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCA 437 (616)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 437 (616)
+..++.|++++|. +..++.......+|+.+++.++..++.+|. .+..+++|+.|++++| .++.+|...+.
T Consensus 153 -----~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~-- 223 (350)
T 4ay9_X 153 -----SFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE-- 223 (350)
T ss_dssp -----BSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT--
T ss_pred -----chhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc--
Confidence 0457788888874 445666666677899999998888888886 4588999999999988 67888887766
Q ss_pred CceEEEccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 438 KLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 438 ~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
+|+.|.+.+++.++..+ .+.++++|+.+++..+
T Consensus 224 ~L~~L~~l~~~~l~~lP-----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLP-----TLEKLVALMEASLTYP 256 (350)
T ss_dssp TCCEEECTTCTTCCCCC-----CTTTCCSCCEEECSCH
T ss_pred cchHhhhccCCCcCcCC-----CchhCcChhhCcCCCC
Confidence 89999988888776542 3566777777777654
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=9.9e-15 Score=146.61 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=120.1
Q ss_pred CcccEEEecCCCCchh-hhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcc--cCCCCCCCCCceE
Q 007138 365 PSLKSLYVYGCSKLES-IAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVS--FPEGGLPCAKLRR 441 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~ 441 (616)
++|++|++++|..... ++..+..+++|+.|++++|......+..+..+++|++|++++|..++. ++.....+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 6677777777654433 566666777777777777764445555666677777777777744442 3333334457777
Q ss_pred EEccCCcccccc-hhhhHhhhcccc-cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccc-cccccccccC
Q 007138 442 LDISDCKRLEGG-FHRYMIALHNLT-NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMV-SFPLEDKRLG 518 (616)
Q Consensus 442 L~l~~c~~l~~~-~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~-~l~~~~~~~~ 518 (616)
|++++|..+++. ++ ..+.+++ +|+.|++++|...... ...+..+..+++|++|++++| ..++ ..+...
T Consensus 173 L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~-~~l~~~~~~~l---- 243 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDS-VMLKNDCFQEF---- 243 (336)
T ss_dssp EECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTC-TTCCGGGGGGG----
T ss_pred EcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCC-CcCCHHHHHHH----
Confidence 777776566543 22 2456677 7777777776310000 000113456788888888885 2222 222222
Q ss_pred CCCCCCCccceEecccCccccccc-cccccCccccEEEecCCCCCcccCCCCC---cCCcceEEEcCCchhhhh
Q 007138 519 TALPLPASLTTLWISRFPNLERLS-SSIVDLQNLTELVLVNCPKLKYFPEKGL---PSSLLQLQIYCCPLIAEK 588 (616)
Q Consensus 519 ~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~ 588 (616)
..+++|++|++++|..+.... ..+..+++|++|++++| ++...+ ...+..|+++++ .+...
T Consensus 244 ---~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 244 ---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp ---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCT
T ss_pred ---hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccc
Confidence 146888888888876433221 14667888888888886 444322 234777777544 34433
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.52 E-value=2.9e-13 Score=133.73 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 260 (616)
++|++|++++|.. +.++. +..+++|++|++++|. ++.++.+..+++|++|++++|.
T Consensus 63 ~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 63 NNLIGLELKDNQI-TDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp TTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred CCCCEEEccCCcC-CCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence 4555555555433 33333 4445555555555542 4444444444444444444443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=138.96 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=51.0
Q ss_pred cccCCccEEEEecCCCccccc-cccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcccCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSF-PLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
..+++|++|++++| .+..+ |.... ....+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|..
T Consensus 221 ~~l~~L~~L~Ls~N--~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~ 290 (310)
T 4glp_A 221 AAGVQPHSLDLSHN--SLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQP 290 (310)
T ss_dssp HHTCCCSSEECTTS--CCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCT
T ss_pred hcCCCCCEEECCCC--CCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchh
Confidence 44566777777765 44443 32221 011236777777777 45667765443 6777777777 667776655
Q ss_pred CCcCCcceEEEcCCc
Q 007138 569 GLPSSLLQLQIYCCP 583 (616)
Q Consensus 569 ~~~~~L~~L~i~~c~ 583 (616)
..+++|++|++++++
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 456777777777765
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.51 E-value=2.7e-13 Score=131.96 Aligned_cols=176 Identities=16% Similarity=0.121 Sum_probs=94.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC-CCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-GGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. +..++. ....+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEE
Confidence 445555555543332222334455555555555554333333345555555555555552 233322 223344556666
Q ss_pred ccCCcccccc-hhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCcc----EEEEecCCCccccccccccccC
Q 007138 444 ISDCKRLEGG-FHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLR----HLTIRGCDDDMVSFPLEDKRLG 518 (616)
Q Consensus 444 l~~c~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~----~L~i~~~~~~l~~l~~~~~~~~ 518 (616)
+++ +.+++. +|. .+.++++|+.|++++|.... .....+..+++|+ .|++++| .+..++...
T Consensus 131 l~~-n~l~~~~l~~---~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~l~l~L~ls~n--~l~~~~~~~---- 196 (276)
T 2z62_A 131 VAH-NLIQSFKLPE---YFSNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMPLLNLSLDLSLN--PMNFIQPGA---- 196 (276)
T ss_dssp CCS-SCCCCCCCCG---GGGGCTTCCEEECCSSCCCE----ECGGGGHHHHTCTTCCEEEECCSS--CCCEECTTS----
T ss_pred CcC-CccceecCch---hhccCCCCCEEECCCCCCCc----CCHHHhhhhhhccccceeeecCCC--cccccCccc----
Confidence 655 234332 232 34455566666666553211 0111333444454 7888876 566665543
Q ss_pred CCCCCCCccceEecccCcccccccc-ccccCccccEEEecCC
Q 007138 519 TALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNC 559 (616)
Q Consensus 519 ~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 559 (616)
....+|+.|++++| .++.+|. .+..+++|++|+++++
T Consensus 197 ---~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 197 ---FKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ---SCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ---cCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence 13458999999984 5888876 4578999999999984
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=9.8e-13 Score=128.62 Aligned_cols=193 Identities=20% Similarity=0.208 Sum_probs=109.4
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCC--CCCCCCCCcEEEccCCCCccccchhhccCCCCCccE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFP--EVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEI 279 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 279 (616)
+++++++++++.. +.+|..+. ++++.|++++|. ++.++ .+..+++|++|++++|. +..++.
T Consensus 10 ~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------ 72 (290)
T 1p9a_G 10 ASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQV------------ 72 (290)
T ss_dssp TTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEEC------------
T ss_pred CCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccC------------
Confidence 5667777766543 56665442 566666776663 44433 23445666666666554 333332
Q ss_pred EEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccc
Q 007138 280 LSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLE 359 (616)
Q Consensus 280 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 359 (616)
...+++|+.|+++++ .++.+ +..+.. +++|++|++++ +.++. .+. ..+..+
T Consensus 73 --------------~~~l~~L~~L~Ls~N-~l~~l--~~~~~~-----l~~L~~L~l~~-N~l~~-l~~----~~~~~l- 123 (290)
T 1p9a_G 73 --------------DGTLPVLGTLDLSHN-QLQSL--PLLGQT-----LPALTVLDVSF-NRLTS-LPL----GALRGL- 123 (290)
T ss_dssp --------------CSCCTTCCEEECCSS-CCSSC--CCCTTT-----CTTCCEEECCS-SCCCC-CCS----STTTTC-
T ss_pred --------------CCCCCcCCEEECCCC-cCCcC--chhhcc-----CCCCCEEECCC-CcCcc-cCH----HHHcCC-
Confidence 233334444544444 33333 332222 45666666666 33332 111 112222
Q ss_pred cCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCC
Q 007138 360 VGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAK 438 (616)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 438 (616)
++|++|++++|......+..+..+++|+.|++++|. ++.+|. .+..+++|+.|++++| .+..+|...+..++
T Consensus 124 -----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~ 196 (290)
T 1p9a_G 124 -----GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHL 196 (290)
T ss_dssp -----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCC
T ss_pred -----CCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhccccc
Confidence 677777777775544333345667788888888765 445554 3467788888888877 56677777776667
Q ss_pred ceEEEccCC
Q 007138 439 LRRLDISDC 447 (616)
Q Consensus 439 L~~L~l~~c 447 (616)
|+.++++++
T Consensus 197 L~~l~L~~N 205 (290)
T 1p9a_G 197 LPFAFLHGN 205 (290)
T ss_dssp CSEEECCSC
T ss_pred CCeEEeCCC
Confidence 888888774
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=8.9e-13 Score=127.73 Aligned_cols=151 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred CcccEEEecCCCCchhhhh-hccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceE
Q 007138 365 PSLKSLYVYGCSKLESIAE-RLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRR 441 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~ 441 (616)
++|++|++++|... .++. .+..+++|+.|++++|.. +.++ ..+..+++|++|++++| .+..++... ..+++|++
T Consensus 61 ~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTY 137 (270)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCE
Confidence 56666666666433 3333 345677777777777653 3343 34567778888888776 444454433 35567888
Q ss_pred EEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCC
Q 007138 442 LDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTAL 521 (616)
Q Consensus 442 L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~ 521 (616)
|++++| .+++..+. .+..+++|++|++++| .++.++... +
T Consensus 138 L~Ls~n-~l~~~~~~-------------------------------~~~~l~~L~~L~L~~n--~l~~~~~~~------~ 177 (270)
T 2o6q_A 138 LSLGYN-ELQSLPKG-------------------------------VFDKLTSLKELRLYNN--QLKRVPEGA------F 177 (270)
T ss_dssp EECCSS-CCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCSCCCTTT------T
T ss_pred EECCCC-cCCccCHh-------------------------------HccCCcccceeEecCC--cCcEeChhH------h
Confidence 888774 55544321 2345566666666654 444444321 2
Q ss_pred CCCCccceEecccCcccccccc-ccccCccccEEEecCC
Q 007138 522 PLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNC 559 (616)
Q Consensus 522 ~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 559 (616)
..+++|++|++++| .++.++. .+..+++|+.|+++++
T Consensus 178 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 178 DKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 24566666666663 4555554 3556667777777664
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=1.1e-14 Score=149.33 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=57.4
Q ss_pred chhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCC--C-cccccc-------cCCCCCccE
Q 007138 161 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEG--L-VKLPQS-------SLSLSSLRE 230 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~-~~~~~~-------~~~l~~L~~ 230 (616)
....+..+++|++|++++|. +.......+...+..+ ++|++|++++|.. + ..+|.. +..+++|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~----~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASK----KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTC----TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhC----CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 44556788888888888874 4432222111223333 7888888888632 1 133443 367888888
Q ss_pred EEEcCCCCCCC-----CC-CCCCCCCCcEEEccCCC
Q 007138 231 IEICKCSSLVS-----FP-EVALPSKLKNIWISTCD 260 (616)
Q Consensus 231 L~l~~~~~l~~-----~~-~~~~~~~L~~L~l~~~~ 260 (616)
|++++|. ++. ++ .+..+++|++|++++|.
T Consensus 99 L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 99 VRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp EECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred EECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 8888874 443 22 23346778888887776
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=136.60 Aligned_cols=181 Identities=17% Similarity=0.102 Sum_probs=126.4
Q ss_pred CcccEEEecCCCCchhhh----hhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcc--cCCC--CCCC
Q 007138 365 PSLKSLYVYGCSKLESIA----ERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVS--FPEG--GLPC 436 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~--~~~~ 436 (616)
++|++|++++|......+ ..+..+++|+.|++++|......+..+..+++|++|++++|..... ++.. ...+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 677888888776554322 2345678899999988876555556778889999999998854321 2222 2345
Q ss_pred CCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcccccc---CCccEEEEecCCCcccccccc
Q 007138 437 AKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRF---SSLRHLTIRGCDDDMVSFPLE 513 (616)
Q Consensus 437 ~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l---~~L~~L~i~~~~~~l~~l~~~ 513 (616)
++|++|++++| .++...+.....++++++|+.|++++|.... ..+..+..+ ++|++|++++| .++.+|..
T Consensus 197 ~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~~~L~~L~Ls~N--~l~~lp~~ 269 (310)
T 4glp_A 197 PAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRA----TVNPSAPRCMWSSALNSLNLSFA--GLEQVPKG 269 (310)
T ss_dssp CCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCC----CCCSCCSSCCCCTTCCCEECCSS--CCCSCCSC
T ss_pred CCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCc----cchhhHHhccCcCcCCEEECCCC--CCCchhhh
Confidence 68999999985 5654322212235788899999999886321 112234444 79999999997 67777765
Q ss_pred ccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCcc
Q 007138 514 DKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 514 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~ 564 (616)
. +++|++|++++ +.++.+|. +..+++|++|++++ |.+.+
T Consensus 270 ~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~-N~l~~ 308 (310)
T 4glp_A 270 L---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDG-NPFLV 308 (310)
T ss_dssp C---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSS-TTTSC
T ss_pred h---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcC-CCCCC
Confidence 4 48999999999 56888874 77899999999999 55543
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=6.8e-13 Score=128.68 Aligned_cols=135 Identities=18% Similarity=0.129 Sum_probs=72.1
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
++|++|++++|......+..+..+++|+.|++++|.. +.++ ..+..+++|+.|++++| .+..++... ..+++|++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 3444444444433322233345566677777766643 3333 33466777777777776 344444433 345577777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
++++| .+++..+. .+..+++|+.|++++| .+. .
T Consensus 187 ~L~~N-~l~~~~~~-------------------------------~~~~l~~L~~L~l~~N--~~~-----~-------- 219 (272)
T 3rfs_A 187 RLYQN-QLKSVPDG-------------------------------VFDRLTSLQYIWLHDN--PWD-----C-------- 219 (272)
T ss_dssp ECCSS-CCSCCCTT-------------------------------TTTTCTTCCEEECCSS--CBC-----C--------
T ss_pred ECCCC-cCCccCHH-------------------------------HHhCCcCCCEEEccCC--Ccc-----c--------
Confidence 77763 45554332 3455566666666664 111 1
Q ss_pred CCCccceEecccCccccccccccccC
Q 007138 523 LPASLTTLWISRFPNLERLSSSIVDL 548 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~~~~~~ 548 (616)
.+++|+.|+++.+.....+|..++.+
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCcHHHHHHHHHHhCCCcccCccccc
Confidence 34566666666655555566544443
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.3e-14 Score=148.64 Aligned_cols=247 Identities=17% Similarity=0.128 Sum_probs=147.0
Q ss_pred CCCCccEEEEecCCCCCccc---ccccccccccccCCCccEEeccCC--CCccccccc--CCCcccccccccCCCCCccc
Q 007138 296 LPPSLKQLSISDCDNIRTLT---VEEGIQSSRRYTSCLLEHLDISSC--PSLTCIFSK--NELPATLESLEVGNLPPSLK 368 (616)
Q Consensus 296 ~~~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~--~~~~~~l~~l~~~~~~~~L~ 368 (616)
.+++|+.|++++| .++... ++..+. .+++|++|++++| ..++...|. ..+...+..+ ++|+
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~-----~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~------~~L~ 97 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIA-----SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC------PKLH 97 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTT-----TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC------TTCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHH-----hCCCccEEeCcccccCccccchhHHHHHHHHHHhhC------Cccc
Confidence 3568899999887 344321 112222 3788899988886 333321111 0111112333 7888
Q ss_pred EEEecCCCCch----hhhhhccCCCCccEEEccccccccc----ccccccCC---------CCCcEEEeccCCCC-cccC
Q 007138 369 SLYVYGCSKLE----SIAERLDNNTSLETISIERCGNLKI----LPSGLHNL---------RQLQGIKIWNCGNL-VSFP 430 (616)
Q Consensus 369 ~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~l~~----~~~~l~~l---------~~L~~L~l~~~~~~-~~~~ 430 (616)
+|++++|.... .++..+..+++|+.|++++|..... ++..+..+ ++|++|++++|... ..++
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 88888886655 4666777788888888888765322 22233344 78888888887432 1232
Q ss_pred ---CCCCCCCCceEEEccCCcccccc-hhhhHh-hhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCC
Q 007138 431 ---EGGLPCAKLRRLDISDCKRLEGG-FHRYMI-ALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDD 505 (616)
Q Consensus 431 ---~~~~~~~~L~~L~l~~c~~l~~~-~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 505 (616)
.....+++|++|++++| .+++. +...+. .+.++++|+.|++++|.....+....+..+..+++|++|++++|
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n-- 254 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-- 254 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC--
T ss_pred HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC--
Confidence 12223457888888885 45421 111222 56778888888888887543333333445677788888888886
Q ss_pred ccccc-----cccccccCCCCCCCCccceEecccCccccc-----ccccc-ccCccccEEEecCCCCCcc
Q 007138 506 DMVSF-----PLEDKRLGTALPLPASLTTLWISRFPNLER-----LSSSI-VDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 506 ~l~~l-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~-~~~~~L~~L~l~~c~~l~~ 564 (616)
.+... +.... ...+++|++|++++|. ++. +|..+ .++++|++|++++ +.+..
T Consensus 255 ~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~~ 317 (386)
T 2ca6_A 255 LLSARGAAAVVDAFS-----KLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNG-NRFSE 317 (386)
T ss_dssp CCCHHHHHHHHHHHH-----TCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTT-SBSCT
T ss_pred CCchhhHHHHHHHHh-----hccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccC-CcCCc
Confidence 33322 22110 0126788888888854 554 66555 5578888888888 44444
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.45 E-value=5.2e-13 Score=129.50 Aligned_cols=200 Identities=16% Similarity=0.144 Sum_probs=112.3
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|+.|++++|.. +.++ .++.+++|++|++++| .++.++.+..+++|++|++++|. +..++.... ..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i-~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDI-KSVQ-GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGNQ-LQSLPNGVF-DKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCC-CCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCEEE
T ss_pred cceeeeeeCCCCc-cccc-ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCccChhHh-cCCcCCCEEE
Confidence 7888888888764 4554 4777888888888887 46666666678888888888775 444443211 3446666666
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. +..++.. .+.. +++|++|+++++ .++. .+. ..+..+
T Consensus 116 L~~n~-l~~~~~~------------------------~~~~-----l~~L~~L~L~~n-~l~~-~~~----~~~~~l--- 156 (272)
T 3rfs_A 116 LVENQ-LQSLPDG------------------------VFDK-----LTNLTYLNLAHN-QLQS-LPK----GVFDKL--- 156 (272)
T ss_dssp CTTSC-CCCCCTT------------------------TTTT-----CTTCCEEECCSS-CCCC-CCT----TTTTTC---
T ss_pred CCCCc-CCccCHH------------------------Hhcc-----CCCCCEEECCCC-ccCc-cCH----HHhccC---
Confidence 66543 3332221 0111 344555555442 2222 110 111111
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceE
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRR 441 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 441 (616)
++|+.|++++|...+..+..+..+++|+.|++++|...+..+..+..+++|+.|++++|+.. ..|++|++
T Consensus 157 ---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~ 226 (272)
T 3rfs_A 157 ---TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRY 226 (272)
T ss_dssp ---TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHH
T ss_pred ---ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHH
Confidence 55666666666444333333456667777777776544333334566777777777776322 12335666
Q ss_pred EEccCCcccccchhh
Q 007138 442 LDISDCKRLEGGFHR 456 (616)
Q Consensus 442 L~l~~c~~l~~~~~~ 456 (616)
+++.. +.++|.+|.
T Consensus 227 l~~~~-n~~~g~ip~ 240 (272)
T 3rfs_A 227 LSEWI-NKHSGVVRN 240 (272)
T ss_dssp HHHHH-HHTGGGBBC
T ss_pred HHHHH-HhCCCcccC
Confidence 66665 455555554
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=1.5e-12 Score=124.60 Aligned_cols=61 Identities=23% Similarity=0.379 Sum_probs=30.9
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+..+++|++|++++| .++.++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 127 ~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 127 FDRLTKLKELRLNTN--QLQSIPAGA------FDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred hccCCcccEEECcCC--cCCccCHHH------cCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 344555666666554 444444321 12455566666655 33444443 445555566666555
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=4e-12 Score=121.65 Aligned_cols=84 Identities=19% Similarity=0.325 Sum_probs=39.3
Q ss_pred cccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEK 568 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~ 568 (616)
..+++|++|++++| .++.++... +..+++|++|++++ +.++.++. .+..+++|++|++++ +.++.++..
T Consensus 104 ~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~ 173 (251)
T 3m19_A 104 DHLTQLDKLYLGGN--QLKSLPSGV------FDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHG 173 (251)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTT
T ss_pred cccCCCCEEEcCCC--cCCCcChhH------hccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCC-CcCCccCHH
Confidence 34445555555543 333333321 11345555555555 24444443 344555555555555 445554442
Q ss_pred CC--cCCcceEEEcCCc
Q 007138 569 GL--PSSLLQLQIYCCP 583 (616)
Q Consensus 569 ~~--~~~L~~L~i~~c~ 583 (616)
.+ +++|++|++++++
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 22 4455555555543
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=1.4e-11 Score=130.84 Aligned_cols=187 Identities=23% Similarity=0.309 Sum_probs=114.0
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
.+|+.|++++|.. +.+|..+ +++|++|++++| .++.+| ..+++|++|++++|. +..++. + . .+|++|+
T Consensus 59 ~~L~~L~Ls~n~L-~~lp~~l--~~~L~~L~Ls~N-~l~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--~--~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSLPDNL--PPQITVLEITQN-ALISLP--ELPASLEYLDACDNR-LSTLPE-L--P--ASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCC-SCCCSCC--CTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-C--C--TTCCEEE
T ss_pred CCccEEEeCCCCC-CccCHhH--cCCCCEEECcCC-CCcccc--cccCCCCEEEccCCC-CCCcch-h--h--cCCCEEE
Confidence 4788999988765 5677755 378889999887 466777 567888888888875 555554 2 1 1677777
Q ss_pred eccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccccccccC
Q 007138 282 IHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATLESLEVG 361 (616)
Q Consensus 282 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~ 361 (616)
++++. ++.++. .+++|+.|+++++ .++.+ +. . +
T Consensus 127 Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~l~~l--p~---~-----l--------------------------------- 159 (571)
T 3cvr_A 127 VDNNQ-LTMLPE--LPALLEYINADNN-QLTML--PE---L-----P--------------------------------- 159 (571)
T ss_dssp CCSSC-CSCCCC--CCTTCCEEECCSS-CCSCC--CC---C-----C---------------------------------
T ss_pred CCCCc-CCCCCC--cCccccEEeCCCC-ccCcC--CC---c-----C---------------------------------
Confidence 76643 444443 3344555555444 22222 11 0 1
Q ss_pred CCCCcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCC-------cEEEeccCCCCcccCCCCC
Q 007138 362 NLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQL-------QGIKIWNCGNLVSFPEGGL 434 (616)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~~~ 434 (616)
++|+.|++++|.... +|. +. ++|+.|++++|. ++.+|. +.. +| +.|++++| .++.+|....
T Consensus 160 ---~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~ 227 (571)
T 3cvr_A 160 ---TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPENIL 227 (571)
T ss_dssp ---TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSS-CCCCCCGGGG
T ss_pred ---CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCC-cceecCHHHh
Confidence 455566666554332 444 33 577777777764 445655 433 55 78888777 5666776666
Q ss_pred CCCCceEEEccCCcccccchhhhHhh
Q 007138 435 PCAKLRRLDISDCKRLEGGFHRYMIA 460 (616)
Q Consensus 435 ~~~~L~~L~l~~c~~l~~~~~~~~~~ 460 (616)
.+++|++|++++ +.+++..|..+..
T Consensus 228 ~l~~L~~L~L~~-N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 228 SLDPTCTIILED-NPLSSRIRESLSQ 252 (571)
T ss_dssp GSCTTEEEECCS-SSCCHHHHHHHHH
T ss_pred cCCCCCEEEeeC-CcCCCcCHHHHHH
Confidence 667788888887 5677766654443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=7.9e-12 Score=122.26 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=111.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|.. ..++ .+..+++|+.|++++|. ++.++. +..+++|++|++++| .+..++. ...+++|++|++
T Consensus 46 ~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEEC
Confidence 5566666666533 2232 25556677777777654 333433 666777777777766 3444433 344457777777
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++. ..+..+++|+.|++++|.... ...+..+++|++|++++| .+..++... .+
T Consensus 120 ~~n-~i~~~-----~~l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~L~~N--~l~~~~~l~--------~l 177 (291)
T 1h6t_A 120 EHN-GISDI-----NGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVPLA--------GL 177 (291)
T ss_dssp TTS-CCCCC-----GGGGGCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSS--CCCCCGGGT--------TC
T ss_pred CCC-cCCCC-----hhhcCCCCCCEEEccCCcCCc------chhhccCCCCCEEEccCC--ccccchhhc--------CC
Confidence 764 45443 245666777777777765221 135677899999999986 666665522 68
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++|+.|++++| .++.++ .+..+++|+.|++++ +.+...+.
T Consensus 178 ~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~-n~i~~~~~ 217 (291)
T 1h6t_A 178 TKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI 217 (291)
T ss_dssp TTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE-EEEECCCE
T ss_pred CccCEEECCCC-cCCCCh-hhccCCCCCEEECcC-CcccCCcc
Confidence 99999999994 688887 488899999999998 55555443
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=6.8e-13 Score=134.49 Aligned_cols=252 Identities=14% Similarity=0.043 Sum_probs=131.7
Q ss_pred chhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccC-CCcEEEccCCCCCcccccccCCC-----CCccEEEEc
Q 007138 161 HNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSC-RLEYLRLSNCEGLVKLPQSSLSL-----SSLREIEIC 234 (616)
Q Consensus 161 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~ 234 (616)
.+.++...++|++|++++|. ++..+...+...+..+ + +|++|++++|......+..+..+ ++|++|+++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~----~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANT----PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTC----CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhC----CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 44555556668888888876 6655543332334444 5 78888888886643334444433 788888888
Q ss_pred CCCCCCCCCC------CCCC-CCCcEEEccCCCCccccchhhcc---CC-CCCccEEEeccCCCCccccccCCCCCccEE
Q 007138 235 KCSSLVSFPE------VALP-SKLKNIWISTCDALKSLPEAWMC---DT-NSSLEILSIHGCRSLTYIAAVQLPPSLKQL 303 (616)
Q Consensus 235 ~~~~l~~~~~------~~~~-~~L~~L~l~~~~~l~~~~~~~~~---~~-~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 303 (616)
+|. ++..+. +... ++|++|++++|. +...+..... .. .++|++|++++|. +......
T Consensus 89 ~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~--------- 156 (362)
T 3goz_A 89 GNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD--------- 156 (362)
T ss_dssp SSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH---------
T ss_pred CCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH---------
Confidence 874 444331 2223 678888887776 4444322110 11 2356666665542 2211000
Q ss_pred EEecCCCCCcccccccccccccccC-CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCch---
Q 007138 304 SISDCDNIRTLTVEEGIQSSRRYTS-CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLE--- 379 (616)
Q Consensus 304 ~l~~~~~l~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~--- 379 (616)
.+ +..+.. + ++|++|++++| .++. .....+...+... |++|++|++++|...+
T Consensus 157 ---------~l--~~~l~~-----~~~~L~~L~Ls~n-~l~~-~~~~~l~~~l~~~-----~~~L~~L~Ls~N~i~~~~~ 213 (362)
T 3goz_A 157 ---------EL--IQILAA-----IPANVNSLNLRGN-NLAS-KNCAELAKFLASI-----PASVTSLDLSANLLGLKSY 213 (362)
T ss_dssp ---------HH--HHHHHT-----SCTTCCEEECTTS-CGGG-SCHHHHHHHHHTS-----CTTCCEEECTTSCGGGSCH
T ss_pred ---------HH--HHHHhc-----CCccccEeeecCC-CCch-hhHHHHHHHHHhC-----CCCCCEEECCCCCCChhHH
Confidence 00 111111 1 14555555553 2222 0000111111111 0267777777765333
Q ss_pred -hhhhhccC-CCCccEEEcccccccccc----cccccCCCCCcEEEeccCC---C----CcccCCCCCCCCCceEEEccC
Q 007138 380 -SIAERLDN-NTSLETISIERCGNLKIL----PSGLHNLRQLQGIKIWNCG---N----LVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 380 -~~~~~~~~-~~~L~~L~l~~~~~l~~~----~~~l~~l~~L~~L~l~~~~---~----~~~~~~~~~~~~~L~~L~l~~ 446 (616)
.++..+.. .++|+.|++++|...... ...+..+++|+.|++++|. . +..++.....+++|+.+++++
T Consensus 214 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 214 AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 24555544 358888888887643322 2234677888888888874 0 122333344556789999988
Q ss_pred Ccccccc
Q 007138 447 CKRLEGG 453 (616)
Q Consensus 447 c~~l~~~ 453 (616)
+.+.+.
T Consensus 294 -N~l~~~ 299 (362)
T 3goz_A 294 -KEIHPS 299 (362)
T ss_dssp -CBCCGG
T ss_pred -CcCCCc
Confidence 456554
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=1.5e-11 Score=112.85 Aligned_cols=147 Identities=12% Similarity=0.124 Sum_probs=75.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|+++++... .++ .+..+++|+.|++++| .+..++ .+..+++|++|++++|......+.....+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45666666655332 344 4555566666666665 233332 4555666666666665332223444444556666666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++..+. .+..+++|++|++++| ..+..++... .+
T Consensus 120 s~n-~i~~~~~~-------------------------------~l~~l~~L~~L~L~~n-~~i~~~~~l~--------~l 158 (197)
T 4ezg_A 120 SHS-AHDDSILT-------------------------------KINTLPKVNSIDLSYN-GAITDIMPLK--------TL 158 (197)
T ss_dssp CSS-BCBGGGHH-------------------------------HHTTCSSCCEEECCSC-TBCCCCGGGG--------GC
T ss_pred cCC-ccCcHhHH-------------------------------HHhhCCCCCEEEccCC-CCccccHhhc--------CC
Confidence 653 34332221 2344555566666553 1244443222 35
Q ss_pred CccceEecccCccccccccccccCccccEEEecC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVN 558 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 558 (616)
++|+.|++++| .+..++ .+..+++|++|++++
T Consensus 159 ~~L~~L~l~~n-~i~~~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 159 PELKSLNIQFD-GVHDYR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp SSCCEEECTTB-CCCCCT-TGGGCSSCCEEEECB
T ss_pred CCCCEEECCCC-CCcChH-HhccCCCCCEEEeeC
Confidence 56666666653 345554 455566666666665
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.31 E-value=2.8e-11 Score=118.36 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=36.2
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCCCccccchhhccCCCCCccEEE
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILS 281 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 281 (616)
++|+.|++++|.. ..++ .++.+++|++|++++| .++.++.+..+++|++|++++|. +..++.. ..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i-~~~~-~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l---~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSSL---KDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCC-CCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGGG---TTCTTCCEEE
T ss_pred CcccEEEccCCCc-ccCh-hHhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChhh---ccCCCCCEEE
Confidence 4555555555443 3333 2455555555555555 34444444445555555555554 3333321 3334444444
Q ss_pred ecc
Q 007138 282 IHG 284 (616)
Q Consensus 282 l~~ 284 (616)
+++
T Consensus 119 L~~ 121 (291)
T 1h6t_A 119 LEH 121 (291)
T ss_dssp CTT
T ss_pred CCC
Confidence 444
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=6.7e-13 Score=134.51 Aligned_cols=236 Identities=16% Similarity=0.061 Sum_probs=140.5
Q ss_pred CCCccEEeccCCCCcccccccCCCcccccccccCCCCC-cccEEEecCCCCchhhhhhccCC-----CCccEEEcccccc
Q 007138 328 SCLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPP-SLKSLYVYGCSKLESIAERLDNN-----TSLETISIERCGN 401 (616)
Q Consensus 328 ~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~ 401 (616)
..+|++|+++++. ++. .+...+...+..+ + +|++|++++|...+..+..+..+ ++|+.|++++|..
T Consensus 21 ~~~L~~L~Ls~n~-l~~-~~~~~l~~~l~~~------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYS-ISTVELIQAFANT------PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp CTTCCEEECTTSC-GGG-SCHHHHHHHHHTC------CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred CCCceEEEccCCC-CCh-HHHHHHHHHHHhC------CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 4559999999854 554 1111111233333 5 79999999886655444443332 7899999998874
Q ss_pred ccccccc----ccCC-CCCcEEEeccCCCCcccCCCC-----CC-CCCceEEEccCCcccccchhhhH-hhhcccc-cce
Q 007138 402 LKILPSG----LHNL-RQLQGIKIWNCGNLVSFPEGG-----LP-CAKLRRLDISDCKRLEGGFHRYM-IALHNLT-NLH 468 (616)
Q Consensus 402 l~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~-----~~-~~~L~~L~l~~c~~l~~~~~~~~-~~~~~l~-~L~ 468 (616)
....+.. +..+ ++|++|++++|. +...+... .. +++|++|++++| .+++.....+ ..+..++ +|+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCcccc
Confidence 4433332 3444 789999999884 44433211 11 248999999984 5665433322 3445555 899
Q ss_pred eeecCCChHHHHHhhhcCcccccc-CCccEEEEecCCCcccc-----ccccccccCCCCCCCCccceEecccCccccccc
Q 007138 469 SLYIGGNMEIWKSMIERGRGFHRF-SSLRHLTIRGCDDDMVS-----FPLEDKRLGTALPLPASLTTLWISRFPNLERLS 542 (616)
Q Consensus 469 ~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~L~i~~~~~~l~~-----l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 542 (616)
.|++++|.....+.......+..+ ++|++|++++| .+.. ++.... ...++|++|++++| .++..+
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N--~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~ 241 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN--LLGLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPS 241 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS--CGGGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCC
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC--CCChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHH
Confidence 999988864321111111233445 48999999886 4444 232221 02458899999884 465543
Q ss_pred c-----ccccCccccEEEecCCCCCcc--------cCC-CCCcCCcceEEEcCCc
Q 007138 543 S-----SIVDLQNLTELVLVNCPKLKY--------FPE-KGLPSSLLQLQIYCCP 583 (616)
Q Consensus 543 ~-----~~~~~~~L~~L~l~~c~~l~~--------l~~-~~~~~~L~~L~i~~c~ 583 (616)
. .+..+++|++|++++| .+.. ++. ....++|++|++++++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 2 3467788999999884 3222 222 1235678888888875
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=9.6e-12 Score=114.13 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCCCCCCCCCcEEEccCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPEVALPSKLKNIWISTCD 260 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~ 260 (616)
++|++|++++|......+..++.+++|++|++++|..++.++.+..+++|++|++++|.
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 45555555555443334444555555555555555334444444445555555555544
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=3e-11 Score=128.35 Aligned_cols=185 Identities=18% Similarity=0.208 Sum_probs=114.1
Q ss_pred CCccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhhhhccCCCCccEEEccccccccccccc
Q 007138 329 CLLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSG 408 (616)
Q Consensus 329 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 408 (616)
.+++.|+++++ +++. +|...+ ++|++|++++|... .+| ..+++|+.|++++|. ++.+|.
T Consensus 59 ~~L~~L~Ls~n-~L~~-lp~~l~-------------~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSS-LPDNLP-------------PQITVLEITQNALI-SLP---ELPASLEYLDACDNR-LSTLPE- 117 (571)
T ss_dssp TTCSEEECCSS-CCSC-CCSCCC-------------TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-CSCCCC-
T ss_pred CCccEEEeCCC-CCCc-cCHhHc-------------CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-CCCcch-
Confidence 47888888874 3443 222211 67888888887544 566 446788888888875 445766
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG 488 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 488 (616)
+.. +|++|++++| .+..+|. .+++|++|++++ +.++++ |. .+++|+.|++++|.... .+.
T Consensus 118 l~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~-N~l~~l-p~------~l~~L~~L~Ls~N~L~~-----lp~- 177 (571)
T 3cvr_A 118 LPA--SLKHLDVDNN-QLTMLPE---LPALLEYINADN-NQLTML-PE------LPTSLEVLSVRNNQLTF-----LPE- 177 (571)
T ss_dssp CCT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCS-SCCSCC-CC------CCTTCCEEECCSSCCSC-----CCC-
T ss_pred hhc--CCCEEECCCC-cCCCCCC---cCccccEEeCCC-CccCcC-CC------cCCCcCEEECCCCCCCC-----cch-
Confidence 444 8888888887 4556766 345888888888 456653 32 45677777777775221 111
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCccccEEEecCCCCCc
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 563 (616)
+. ++|+.|++++| .++.+|. ... ......+.|+.|++++ +.++.+|..+..+++|+.|++++ |.+.
T Consensus 178 l~--~~L~~L~Ls~N--~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~-N~l~ 243 (571)
T 3cvr_A 178 LP--ESLEALDVSTN--LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILED-NPLS 243 (571)
T ss_dssp CC--TTCCEEECCSS--CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCS-SSCC
T ss_pred hh--CCCCEEECcCC--CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeC-CcCC
Confidence 22 67777777776 5666665 310 0000112227777777 45777777666677777777777 3443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=3.2e-11 Score=129.61 Aligned_cols=172 Identities=18% Similarity=0.216 Sum_probs=117.4
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
+.|+.|++++|.. ..++ .+..+++|+.|++++|. +..++. +..+++|+.|++++| .+..++ ....+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDI-KSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCC-CCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC-CCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEe
Confidence 5666666666543 3333 35667777777777765 334433 667777777777776 444444 3445567888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++. ..+..+++|+.|+|++|.... ...+..+++|+.|++++| .+..++... .+
T Consensus 117 s~N-~l~~l-----~~l~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~L~Ls~N--~l~~~~~l~--------~l 174 (605)
T 1m9s_A 117 EHN-GISDI-----NGLVHLPQLESLYLGNNKITD------ITVLSRLTKLDTLSLEDN--QISDIVPLA--------GL 174 (605)
T ss_dssp TTS-CCCCC-----GGGGGCTTCSEEECCSSCCCC------CGGGGSCTTCSEEECCSS--CCCCCGGGT--------TC
T ss_pred cCC-CCCCC-----ccccCCCccCEEECCCCccCC------chhhcccCCCCEEECcCC--cCCCchhhc--------cC
Confidence 774 45543 246677788888887775321 135678899999999987 566655422 68
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccCC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
++|+.|++++| .+..++ .+..+++|+.|++++ +.+...|.
T Consensus 175 ~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~-N~l~~~p~ 214 (605)
T 1m9s_A 175 TKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS-QECLNKPI 214 (605)
T ss_dssp TTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCS-EEEECCCC
T ss_pred CCCCEEECcCC-CCCCCh-HHccCCCCCEEEccC-CcCcCCcc
Confidence 99999999995 678776 688899999999999 55555544
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=6.2e-11 Score=127.39 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=80.7
Q ss_pred HhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCcccccccCCCCCccEEEEcCCCCCCCCCC
Q 007138 165 LQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCSSLVSFPE 244 (616)
Q Consensus 165 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 244 (616)
...+++|+.|+++++. +..++ .+..+ ++|+.|++++|.. ..++. +..+++|+.|++++| .+..++.
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~------~l~~l----~~L~~L~Ls~N~l-~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~ 104 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQ------GIQYL----PNVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDEN-KIKDLSS 104 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCT------TGGGC----TTCCEEECTTSCC-CCCGG-GGGCTTCCEEECCSS-CCCCCTT
T ss_pred hhcCCCCCEEECcCCC-CCCCh------HHccC----CCCCEEEeeCCCC-CCChh-hccCCCCCEEECcCC-CCCCChh
Confidence 4567788888887765 55442 24444 7888888888765 45554 777888888888887 4667777
Q ss_pred CCCCCCCcEEEccCCCCccccchhhccCCCCCccEEEeccCCCCccccccCCCCCccEEEEecC
Q 007138 245 VALPSKLKNIWISTCDALKSLPEAWMCDTNSSLEILSIHGCRSLTYIAAVQLPPSLKQLSISDC 308 (616)
Q Consensus 245 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 308 (616)
+..+++|+.|++++|. +..++.. ..+++|+.|++++|. +..++....+++|+.|++++|
T Consensus 105 l~~l~~L~~L~Ls~N~-l~~l~~l---~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNG-ISDINGL---VHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp STTCTTCCEEECTTSC-CCCCGGG---GGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS
T ss_pred hccCCCCCEEEecCCC-CCCCccc---cCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC
Confidence 7778888888888776 4445433 455667777776653 444433344455555555554
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=2.5e-11 Score=116.81 Aligned_cols=170 Identities=14% Similarity=0.171 Sum_probs=119.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
.++..+.+.++.. ..++ .+..+++|+.|++++|. ++.++ ++..+++|+.|++++| .+..++. ...+++|++|++
T Consensus 19 ~~l~~l~l~~~~i-~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSV-TDLV-SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCT-TSEE-CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCc-cccc-chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 4556666666543 3343 45667899999999975 66676 6888999999999988 5666655 556679999999
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.+++..+ +.. ++|+.|++++|.... ...+..+++|++|++++| .++.++... .+
T Consensus 93 ~~-N~l~~l~~-----~~~-~~L~~L~L~~N~l~~------~~~l~~l~~L~~L~Ls~N--~i~~~~~l~--------~l 149 (263)
T 1xeu_A 93 NR-NRLKNLNG-----IPS-ACLSRLFLDNNELRD------TDSLIHLKNLEILSIRNN--KLKSIVMLG--------FL 149 (263)
T ss_dssp CS-SCCSCCTT-----CCC-SSCCEEECCSSCCSB------SGGGTTCTTCCEEECTTS--CCCBCGGGG--------GC
T ss_pred CC-CccCCcCc-----ccc-CcccEEEccCCccCC------ChhhcCcccccEEECCCC--cCCCChHHc--------cC
Confidence 98 46766422 222 788888888886322 235677888888888886 566665333 57
Q ss_pred CccceEecccCccccccccccccCccccEEEecCCCCCcccC
Q 007138 525 ASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
++|+.|++++ +.+..+ ..+..+++|+.|++++ +.+...|
T Consensus 150 ~~L~~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~-N~~~~~~ 188 (263)
T 1xeu_A 150 SKLEVLDLHG-NEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188 (263)
T ss_dssp TTCCEEECTT-SCCCBC-TTSTTCCCCCEEEEEE-EEEECCC
T ss_pred CCCCEEECCC-CcCcch-HHhccCCCCCEEeCCC-CcccCCc
Confidence 8888888888 456666 4677788888888888 4555443
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.21 E-value=1.6e-10 Score=108.63 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=75.3
Q ss_pred cccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEc
Q 007138 366 SLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDI 444 (616)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l 444 (616)
+.+.++.+++ .+..+|..+. ++|+.|++++|...+..+..+..+++|++|++++| .+..++... ..+++|++|++
T Consensus 20 s~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEEC
Confidence 3445555443 3344454332 46666666665544434445566666666666665 344444332 23445566666
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++ +.+++..+. .+..+++|+.|++++| .++.++.... .+
T Consensus 96 s~-N~l~~l~~~-------------------------------~~~~l~~L~~L~Ls~N--~l~~lp~~~~-------~l 134 (229)
T 3e6j_A 96 GT-NQLTVLPSA-------------------------------VFDRLVHLKELFMCCN--KLTELPRGIE-------RL 134 (229)
T ss_dssp CS-SCCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCCSCCTTGG-------GC
T ss_pred CC-CcCCccChh-------------------------------HhCcchhhCeEeccCC--cccccCcccc-------cC
Confidence 55 344433221 2345566666666654 4445544332 45
Q ss_pred CccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 525 ASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
++|++|++++ +.++.++. .+..+++|++|++.+
T Consensus 135 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 135 THLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeC
Confidence 5666666665 34555543 345555666666655
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.18 E-value=1.1e-10 Score=108.01 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=67.8
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
+++++|+++++......+..+..+++|+.|++++|. ++.++. .+..+++|++|++++| .+..++... ..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence 556667776664443333335566777777777754 334433 3466777777777766 444554433 345567777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
++++ +.+++..+. .+.++++|+.|++++|... ......+..+++|++|++++|
T Consensus 106 ~L~~-N~l~~~~~~---~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 106 ALNT-NQLQSLPDG---VFDKLTQLKDLRLYQNQLK----SVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp ECCS-SCCCCCCTT---TTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSC
T ss_pred EcCC-CcCcccCHh---HhccCCcCCEEECCCCccc----eeCHHHhccCCCccEEEecCC
Confidence 7776 355554332 2334444444444444311 011112444555555555554
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=3.2e-11 Score=115.98 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=113.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|+.|++++|. +..++ .+..+++|+.|++++|. ++.++. +..+++|++|++++| .+..++.... ++|++|++
T Consensus 41 ~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCEEEC
T ss_pred CcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccEEEc
Confidence 788899998884 44555 57788899999999876 555655 889999999999998 5666665444 58999999
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLP 524 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~ 524 (616)
++| .+++. ..+..+++|+.|++++|.... ...+..+++|++|++++| .+..+.. +..+
T Consensus 114 ~~N-~l~~~-----~~l~~l~~L~~L~Ls~N~i~~------~~~l~~l~~L~~L~L~~N--~i~~~~~--------l~~l 171 (263)
T 1xeu_A 114 DNN-ELRDT-----DSLIHLKNLEILSIRNNKLKS------IVMLGFLSKLEVLDLHGN--EITNTGG--------LTRL 171 (263)
T ss_dssp CSS-CCSBS-----GGGTTCTTCCEEECTTSCCCB------CGGGGGCTTCCEEECTTS--CCCBCTT--------STTC
T ss_pred cCC-ccCCC-----hhhcCcccccEEECCCCcCCC------ChHHccCCCCCEEECCCC--cCcchHH--------hccC
Confidence 994 67664 257889999999999986332 225778999999999997 6666522 2368
Q ss_pred CccceEecccCccccccc
Q 007138 525 ASLTTLWISRFPNLERLS 542 (616)
Q Consensus 525 ~~L~~L~l~~c~~l~~i~ 542 (616)
++|+.|+++++ .+...|
T Consensus 172 ~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 172 KKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp CCCCEEEEEEE-EEECCC
T ss_pred CCCCEEeCCCC-cccCCc
Confidence 99999999995 455555
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=2.1e-10 Score=107.77 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCccceEecccCccccccccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCC
Q 007138 524 PASLTTLWISRFPNLERLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCC 582 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 582 (616)
+++|++|++++ +.++.+|..+..+++|++|++++ ++++.++...+ +++|++|+++++
T Consensus 111 l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 111 LVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred chhhCeEeccC-CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 44555555554 33444444444455555555554 44444443211 344555555444
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.16 E-value=3.6e-10 Score=105.44 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=30.5
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+..+++|++|++++| .+..++... +..+++|+.|++++ +.++.++. .+..+++|++|++++
T Consensus 100 f~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 100 FEGLFSLQLLLLNAN--KINCLRVDA------FQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccCCCCCCEEECCCC--CCCEeCHHH------cCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCC
Confidence 344555666666554 444433221 22455556666655 33444443 344555555555555
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=2.8e-10 Score=115.00 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=54.3
Q ss_pred CcccEEEecCCCCchhhhhhcc-CCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLD-NNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
+.++.|++++|...+..+..+. .+++|+.|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEE
Confidence 4456666666644333233333 5666666666665533222334566666666666666 34444443 2334566666
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
++++ +.+++..+. .+..+++|+.|++++|
T Consensus 118 ~L~~-N~i~~~~~~---~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 118 LLYN-NHIVVVDRN---AFEDMAQLQKLYLSQN 146 (361)
T ss_dssp ECCS-SCCCEECTT---TTTTCTTCCEEECCSS
T ss_pred ECCC-CcccEECHH---HhCCcccCCEEECCCC
Confidence 6666 345544332 2333444444444444
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.14 E-value=1.5e-10 Score=117.09 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=59.3
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-ccc-CCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEc
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLH-NLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDI 444 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~-~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 444 (616)
+.++++++ .+..+|..+. +.++.|++++|. ++.++. .+. .+++|+.|++++| .+..++.. ...+++|++|++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 45566554 3444565433 368888888875 444443 444 7888888888887 55555543 445668888888
Q ss_pred cCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 445 SDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 445 ~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
++ +.++...+. .+..+++|+.|++++|
T Consensus 96 s~-N~l~~~~~~---~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 96 SS-NHLHTLDEF---LFSDLQALEVLLLYNN 122 (361)
T ss_dssp CS-SCCCEECTT---TTTTCTTCCEEECCSS
T ss_pred CC-CcCCcCCHH---HhCCCcCCCEEECCCC
Confidence 88 456655442 2334444444444444
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.12 E-value=5.1e-10 Score=104.39 Aligned_cols=131 Identities=11% Similarity=0.184 Sum_probs=75.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~ 443 (616)
++++.|++++|......+..+..+++|+.|++++|......|..+..+++|++|++++| .+..++... ..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 45666666666443333334555666666666665543333555666666666666665 344555443 2344666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPL 523 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~ 523 (616)
+++ +.+++..|. .+..+++|+.|++++| .++.++... +..
T Consensus 111 L~~-N~l~~~~~~-------------------------------~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~ 150 (220)
T 2v9t_B 111 LNA-NKINCLRVD-------------------------------AFQDLHNLNLLSLYDN--KLQTIAKGT------FSP 150 (220)
T ss_dssp CCS-SCCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCSCCCTTT------TTT
T ss_pred CCC-CCCCEeCHH-------------------------------HcCCCCCCCEEECCCC--cCCEECHHH------HhC
Confidence 666 345443322 4566778888888876 566665432 235
Q ss_pred CCccceEecccCc
Q 007138 524 PASLTTLWISRFP 536 (616)
Q Consensus 524 ~~~L~~L~l~~c~ 536 (616)
+++|+.|++++++
T Consensus 151 l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 151 LRAIQTMHLAQNP 163 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEEeCCCC
Confidence 7788888888754
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=5.5e-10 Score=104.17 Aligned_cols=146 Identities=15% Similarity=0.223 Sum_probs=79.4
Q ss_pred cEEEcccccccccccccccCCCCCcEEEeccCCCCcccCC-C-CCCCCCceEEEccCCcccccchhhhHhhhccccccee
Q 007138 392 ETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPE-G-GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHS 469 (616)
Q Consensus 392 ~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~ 469 (616)
+.++++++. ++.+|..+. +.++.|++++| .+..++. . ...+++|++|++++ +.++++.+.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~------------- 75 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSN-NKITDIEEG------------- 75 (220)
T ss_dssp TEEECCSSC-CSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCS-SCCCEECTT-------------
T ss_pred CEeEeCCCC-cccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCC-CcCCEECHH-------------
Confidence 466666643 455665432 34567777766 3444422 2 22445677777766 445554332
Q ss_pred eecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccc-ccccccC
Q 007138 470 LYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL-SSSIVDL 548 (616)
Q Consensus 470 L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~ 548 (616)
.+..+++|++|++++| .++.++... +..+++|++|++++ +.+..+ |..+..+
T Consensus 76 ------------------~~~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l 128 (220)
T 2v70_A 76 ------------------AFEGASGVNEILLTSN--RLENVQHKM------FKGLESLKTLMLRS-NRITCVGNDSFIGL 128 (220)
T ss_dssp ------------------TTTTCTTCCEEECCSS--CCCCCCGGG------GTTCSSCCEEECTT-SCCCCBCTTSSTTC
T ss_pred ------------------HhCCCCCCCEEECCCC--ccCccCHhH------hcCCcCCCEEECCC-CcCCeECHhHcCCC
Confidence 3455566666666664 444444431 12456666666666 334444 3355566
Q ss_pred ccccEEEecCCCCCcccCCCC--CcCCcceEEEcCCc
Q 007138 549 QNLTELVLVNCPKLKYFPEKG--LPSSLLQLQIYCCP 583 (616)
Q Consensus 549 ~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 583 (616)
++|++|++++ +.++.+++.. .+++|++|++++++
T Consensus 129 ~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 129 SSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred ccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6666666666 5666654422 25566666666654
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.09 E-value=3.8e-10 Score=100.51 Aligned_cols=138 Identities=19% Similarity=0.271 Sum_probs=88.1
Q ss_pred CCCCccEEEccccccc-ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccc
Q 007138 387 NNTSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLT 465 (616)
Q Consensus 387 ~~~~L~~L~l~~~~~l-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~ 465 (616)
..++|+.|++++|... ..+|..+..+++|+.|++++|. +..+ .....+++|++|++++| .+++.+|.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~--------- 89 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDM--------- 89 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCH---------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHH---------
Confidence 3467888888887643 3677777788888888888874 5555 44455668888888884 56554442
Q ss_pred cceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--
Q 007138 466 NLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-- 543 (616)
Q Consensus 466 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-- 543 (616)
.+..+++|+.|++++| .++.++... .+..+++|++|++++| .+..++.
T Consensus 90 ----------------------~~~~l~~L~~L~Ls~N--~l~~~~~~~-----~l~~l~~L~~L~l~~N-~l~~~~~~~ 139 (168)
T 2ell_A 90 ----------------------LAEKLPNLTHLNLSGN--KLKDISTLE-----PLKKLECLKSLDLFNC-EVTNLNDYR 139 (168)
T ss_dssp ----------------------HHHHCTTCCEEECBSS--SCCSSGGGG-----GGSSCSCCCEEECCSS-GGGTSTTHH
T ss_pred ----------------------HHhhCCCCCEEeccCC--ccCcchhHH-----HHhcCCCCCEEEeeCC-cCcchHHHH
Confidence 1233566777777665 455544210 0125677777777774 4666654
Q ss_pred --ccccCccccEEEecCCCCCcccCC
Q 007138 544 --SIVDLQNLTELVLVNCPKLKYFPE 567 (616)
Q Consensus 544 --~~~~~~~L~~L~l~~c~~l~~l~~ 567 (616)
.+..+++|++|++++ +.+.++|.
T Consensus 140 ~~~~~~l~~L~~L~l~~-n~~~~~~~ 164 (168)
T 2ell_A 140 ESVFKLLPQLTYLDGYD-REDQEAPD 164 (168)
T ss_dssp HHHHTTCSSCCEETTEE-TTSCBCCS
T ss_pred HHHHHhCccCcEecCCC-CChhhccc
Confidence 566777888888877 45555554
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.04 E-value=2.3e-09 Score=99.90 Aligned_cols=89 Identities=9% Similarity=0.131 Sum_probs=47.7
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc-CCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 443 (616)
++|++|++++|......+..+..+++|+.|++++|......+..+..+++|++|++++|. +..+ +.....+++|++|+
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEE
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEE
Confidence 556666666554433333345556666666666655433333345666666666666653 3333 33333445666666
Q ss_pred ccCCcccccchh
Q 007138 444 ISDCKRLEGGFH 455 (616)
Q Consensus 444 l~~c~~l~~~~~ 455 (616)
+++ +.+++..|
T Consensus 136 L~~-N~l~~~~~ 146 (220)
T 2v70_A 136 LYD-NQITTVAP 146 (220)
T ss_dssp CTT-SCCCCBCT
T ss_pred CCC-CcCCEECH
Confidence 666 45555444
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=3.1e-09 Score=98.22 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=83.1
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccC
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISD 446 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~ 446 (616)
+.++.+++ ....+|..+ .++|+.|++++|......+..+..+++|++|++++| .+..++... ..+++|++|++++
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 34444443 333445333 358999999987644333334678899999999887 556666544 3566889999988
Q ss_pred CcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCc
Q 007138 447 CKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPAS 526 (616)
Q Consensus 447 c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~ 526 (616)
+ .+++..+. .+..+++|++|++++| .++.++... +..+++
T Consensus 86 n-~l~~~~~~-------------------------------~~~~l~~L~~L~L~~N--~l~~~~~~~------~~~l~~ 125 (208)
T 2o6s_A 86 N-QLQSLPNG-------------------------------VFDKLTQLKELALNTN--QLQSLPDGV------FDKLTQ 125 (208)
T ss_dssp S-CCCCCCTT-------------------------------TTTTCTTCCEEECCSS--CCCCCCTTT------TTTCTT
T ss_pred C-cCCccCHh-------------------------------HhcCccCCCEEEcCCC--cCcccCHhH------hccCCc
Confidence 4 56654332 2344455555555554 334333321 123455
Q ss_pred cceEecccCcccccccc-ccccCccccEEEecCC
Q 007138 527 LTTLWISRFPNLERLSS-SIVDLQNLTELVLVNC 559 (616)
Q Consensus 527 L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 559 (616)
|++|+++++ .++.++. .+..+++|++|+++++
T Consensus 126 L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 126 LKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 555555552 3444443 2445555566655553
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=7e-10 Score=96.52 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=71.3
Q ss_pred CCccEEEccccccc-ccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccc
Q 007138 389 TSLETISIERCGNL-KILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNL 467 (616)
Q Consensus 389 ~~L~~L~l~~~~~l-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L 467 (616)
++|+.|++++|... +.+|..+..+++|+.|++++| .+..+ .....+++|++|++++ +.+++.+|.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~----------- 82 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSD-NRVSGGLEV----------- 82 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCS-SCCCSCTHH-----------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCC-CcccchHHH-----------
Confidence 46777777776643 366666677777888887776 44444 3344556788888877 356554443
Q ss_pred eeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCcccccc--ccccccCCCCCCCCccceEecccCcccccccc--
Q 007138 468 HSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFP--LEDKRLGTALPLPASLTTLWISRFPNLERLSS-- 543 (616)
Q Consensus 468 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-- 543 (616)
.+..+++|++|++++| .++.++ ... ..+++|++|++++| .++.++.
T Consensus 83 --------------------~~~~l~~L~~L~ls~N--~i~~~~~~~~~-------~~l~~L~~L~l~~N-~l~~~~~~~ 132 (149)
T 2je0_A 83 --------------------LAEKCPNLTHLNLSGN--KIKDLSTIEPL-------KKLENLKSLDLFNC-EVTNLNDYR 132 (149)
T ss_dssp --------------------HHHHCTTCCEEECTTS--CCCSHHHHGGG-------GGCTTCCEEECTTC-GGGGSTTHH
T ss_pred --------------------HhhhCCCCCEEECCCC--cCCChHHHHHH-------hhCCCCCEEeCcCC-cccchHHHH
Confidence 1123455555555554 333332 111 13566666666663 4555543
Q ss_pred --ccccCccccEEEec
Q 007138 544 --SIVDLQNLTELVLV 557 (616)
Q Consensus 544 --~~~~~~~L~~L~l~ 557 (616)
.+..+++|+.|+++
T Consensus 133 ~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 133 ENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEETTB
T ss_pred HHHHHHCCCcccccCC
Confidence 45566666666654
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=2e-11 Score=130.40 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=113.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEccccc-------------ccccccccccCCCCCcEEE-eccCC------
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCG-------------NLKILPSGLHNLRQLQGIK-IWNCG------ 424 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~l~~~~~~l~~l~~L~~L~-l~~~~------ 424 (616)
+.|+.|+++++ .++.+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ +..+.
T Consensus 349 ~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 55666666665 334566666666666666665443 2333444555666666665 22220
Q ss_pred ------CCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEE
Q 007138 425 ------NLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHL 498 (616)
Q Consensus 425 ------~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 498 (616)
.+..++. ..|+.|++++ +.++++ | .++.+++|+.|++++|... ..+..+..+++|+.|
T Consensus 428 l~l~~n~i~~l~~-----~~L~~L~Ls~-n~l~~l-p----~~~~l~~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 428 KFLLENSVLKMEY-----ADVRVLHLAH-KDLTVL-C----HLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVL 491 (567)
T ss_dssp HHHHHHHHHHHHH-----TTCSEEECTT-SCCSSC-C----CGGGGTTCCEEECCSSCCC-----CCCGGGGGCTTCCEE
T ss_pred hhhhcccccccCc-----cCceEEEecC-CCCCCC-c----CccccccCcEeecCccccc-----ccchhhhcCCCCCEE
Confidence 1111111 1477777777 456553 3 2566667777777766522 123356777888888
Q ss_pred EEecCCCccccccccccccCCCCCCCCccceEecccCcccccc--ccccccCccccEEEecCCCCCcccCCCCC-----c
Q 007138 499 TIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERL--SSSIVDLQNLTELVLVNCPKLKYFPEKGL-----P 571 (616)
Q Consensus 499 ~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-----~ 571 (616)
++++| .++.+| .. ..+++|++|++++ +.++.+ |..+..+++|++|++++ +.+..+|+... +
T Consensus 492 ~Ls~N--~l~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 492 QASDN--ALENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEML 559 (567)
T ss_dssp ECCSS--CCCCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHC
T ss_pred ECCCC--CCCCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHC
Confidence 88886 666676 32 2678888888888 456766 66788888888888888 67777766321 5
Q ss_pred CCcceEE
Q 007138 572 SSLLQLQ 578 (616)
Q Consensus 572 ~~L~~L~ 578 (616)
|+|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 6777764
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.97 E-value=1.1e-08 Score=101.91 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=16.2
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEE
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELV 555 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~ 555 (616)
.+++|+.+++.+ +.++.|+. .+..+++|++++
T Consensus 295 ~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 295 GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 445555555544 34555544 455555555554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.92 E-value=3.3e-09 Score=94.29 Aligned_cols=23 Identities=17% Similarity=0.026 Sum_probs=14.7
Q ss_pred cccccCCccEEEEecCCCccccccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPL 512 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~ 512 (616)
.+..+++|+.|++++| ....++.
T Consensus 142 ~~~~l~~L~~L~l~~n--~~~~~~~ 164 (168)
T 2ell_A 142 VFKLLPQLTYLDGYDR--EDQEAPD 164 (168)
T ss_dssp HHTTCSSCCEETTEET--TSCBCCS
T ss_pred HHHhCccCcEecCCCC--Chhhccc
Confidence 3566777888887775 4444444
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.89 E-value=3e-09 Score=92.46 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=7.0
Q ss_pred ccccCCccEEEEe
Q 007138 489 FHRFSSLRHLTIR 501 (616)
Q Consensus 489 ~~~l~~L~~L~i~ 501 (616)
+..+++|+.|+++
T Consensus 136 ~~~l~~L~~L~l~ 148 (149)
T 2je0_A 136 FKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEETTB
T ss_pred HHHCCCcccccCC
Confidence 3445566665553
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.86 E-value=4.5e-09 Score=94.22 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=25.5
Q ss_pred CCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccC
Q 007138 387 NNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISD 446 (616)
Q Consensus 387 ~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 446 (616)
.+++|+.|++++|. ++.++......++|+.|++++| .+..+ .....+++|++|++++
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~ 73 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNN 73 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCS
T ss_pred CcCCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCC
Confidence 34455555555543 3333322222235555555555 33333 2223334555555555
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=1.5e-08 Score=100.95 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=149.9
Q ss_pred eEeeccCCCcccccCC-CCCCccEEeecCCcchh--hhhcC-CCCccEEEeCCCcceeecccccccCCCCceeecCCCcc
Q 007138 54 ELHIISCSKLQGTFPE-HLPALEMLVIEGCEELL--VSVAS-LPALCKFEIGGCKKVVWRSATDHLGSQNSVVCRDTSNQ 129 (616)
Q Consensus 54 ~L~l~~c~~l~~~~p~-~~~~L~~L~l~~c~~l~--~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (616)
++.+..-..+.+.++. .++++++|.+++.-... ..+.. +++|+.|+++++.+..+....
T Consensus 6 ~~~~~~~g~l~~~l~~~~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~----------------- 68 (329)
T 3sb4_A 6 TYYVSKPGTLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA----------------- 68 (329)
T ss_dssp EEEESSTTCGGGGSCHHHHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS-----------------
T ss_pred eEecCCCCcHHhhccchhhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc-----------------
Confidence 3444433333333332 35567777777653211 23333 788999999999876221110
Q ss_pred eeecCCCCCCCCCCcEEEecCCCCcccccccchhHHhc--------CCCccEEeeccCCCccccchhhhhhHHhhhhhcc
Q 007138 130 VFLAGPLKPRIPKLEELEIKNIENETYVWKSHNELLQD--------ICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELS 201 (616)
Q Consensus 130 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~--------l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~ 201 (616)
..++.+..+.. ..+ .++...|.. +++|++|++.+ .++.++.. .+..+
T Consensus 69 --------~~~~~~~~~~~---~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~----aF~~~---- 123 (329)
T 3sb4_A 69 --------GTYPNGKFYIY---MAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDA----AFKGC---- 123 (329)
T ss_dssp --------SSSGGGCCEEE---CTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTT----TTTTC----
T ss_pred --------ccccccccccc---ccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHH----HhhcC----
Confidence 11111111211 111 145556667 88888888877 46666554 23344
Q ss_pred CCCcEEEccCCCCCcccccccCCCCCccEEEEcCCC---CCCCCCC--CCCCCCCc-EEEccCCCCccccchhhccCCCC
Q 007138 202 CRLEYLRLSNCEGLVKLPQSSLSLSSLREIEICKCS---SLVSFPE--VALPSKLK-NIWISTCDALKSLPEAWMCDTNS 275 (616)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~l~~~~~--~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~ 275 (616)
++|+.+++.++....--+..|..+.++..+...... ....+.. ...+..|+ .+.+.....+ +......
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l---~~~~~~~--- 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL---EDEIMKA--- 197 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH---HHHHHHT---
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH---HHHHhhc---
Confidence 788888888776533333455555555554443311 1111111 11133333 3333222111 1110000
Q ss_pred CccEEEeccCCCCccccccCCCCCccEEEEecCCCCCcccccccccccccccCCCccEEeccCCCCcccccccCCCcccc
Q 007138 276 SLEILSIHGCRSLTYIAAVQLPPSLKQLSISDCDNIRTLTVEEGIQSSRRYTSCLLEHLDISSCPSLTCIFSKNELPATL 355 (616)
Q Consensus 276 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l 355 (616)
+ ..+.++..+.+.+.- ....+..... .+++|+++++.+ ++++. .+...|.
T Consensus 198 ---------~---------~~~~~~~~l~~~~~l--~~~~~~~l~~-----~~~~L~~l~L~~-n~i~~-I~~~aF~--- 247 (329)
T 3sb4_A 198 ---------G---------LQPRDINFLTIEGKL--DNADFKLIRD-----YMPNLVSLDISK-TNATT-IPDFTFA--- 247 (329)
T ss_dssp ---------T---------CCGGGCSEEEEEECC--CHHHHHHHHH-----HCTTCCEEECTT-BCCCE-ECTTTTT---
T ss_pred ---------c---------cCccccceEEEeeee--cHHHHHHHHH-----hcCCCeEEECCC-CCcce-ecHhhhh---
Confidence 0 112233444443321 1110000000 145566666665 22333 2222221
Q ss_pred cccccCCCCCcccEEEecCCCCchhhh-hhccCCCCcc-EEEccccccccccc-ccccCCCCCcEEEeccCCCCcccCCC
Q 007138 356 ESLEVGNLPPSLKSLYVYGCSKLESIA-ERLDNNTSLE-TISIERCGNLKILP-SGLHNLRQLQGIKIWNCGNLVSFPEG 432 (616)
Q Consensus 356 ~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~l~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 432 (616)
.+ .+|+.+.+.++ +..++ ..+..+++|+ .+++.+ .++.++ ..+..|++|+.+++..+ .+..++..
T Consensus 248 -~~------~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~ 315 (329)
T 3sb4_A 248 -QK------KYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDE 315 (329)
T ss_dssp -TC------TTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTT
T ss_pred -CC------CCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchh
Confidence 11 67777777765 44444 3467788888 888876 455554 46788899999998765 56777765
Q ss_pred CC-CCCCceEEEc
Q 007138 433 GL-PCAKLRRLDI 444 (616)
Q Consensus 433 ~~-~~~~L~~L~l 444 (616)
.+ .|++|+.++.
T Consensus 316 aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 316 LFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTCCCCEEEC
T ss_pred hhcCCcchhhhcc
Confidence 54 5677887764
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.81 E-value=3.1e-08 Score=90.09 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=33.1
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
.+..+++|++|++++| .++.++... +..+++|+.|++++ +.++.++. .+..+++|+.|++++
T Consensus 73 ~f~~l~~L~~L~Ls~N--~l~~i~~~~------f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 73 SFSNMTQLLTLILSYN--RLRCIPPRT------FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTTTCTTCCEEECCSS--CCCBCCTTT------TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS
T ss_pred HccCCCCCCEEECCCC--ccCEeCHHH------hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCC
Confidence 3455566666666664 444444321 22455666666665 34555554 345556666666665
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.81 E-value=4.1e-09 Score=94.46 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=88.5
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCcc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRG 488 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 488 (616)
+..+++|+.|++++| .+..++......++|++|++++| .+++. ..
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~---------------------------------~~ 59 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL---------------------------------DG 59 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE---------------------------------CC
T ss_pred cCCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc---------------------------------cc
Confidence 446678888888887 45555442222337888888874 45442 14
Q ss_pred ccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc--ccccCccccEEEecCCCCCcccC
Q 007138 489 FHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS--SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 489 ~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~--~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
+..+++|++|++++| .+..++... +..+++|+.|++++ +.++.+|. .+..+++|+.|++++ +.+..+|
T Consensus 60 l~~l~~L~~L~Ls~N--~l~~~~~~~------~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~ 129 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN--RICRIGEGL------DQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILR-NPVTNKK 129 (176)
T ss_dssp CCCCSSCCEEECCSS--CCCEECSCH------HHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCS-SGGGGST
T ss_pred cccCCCCCEEECCCC--cccccCcch------hhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecC-CCCCCcH
Confidence 566777888888776 566665432 01467888888888 45677775 677788888888888 5667776
Q ss_pred CC-----CCcCCcceEEEcCCchhh
Q 007138 567 EK-----GLPSSLLQLQIYCCPLIA 586 (616)
Q Consensus 567 ~~-----~~~~~L~~L~i~~c~~l~ 586 (616)
.. ..+++|++|+++++..-+
T Consensus 130 ~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 130 HYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp THHHHHHHHCTTCSEETTEECCHHH
T ss_pred hHHHHHHHHCCccceeCCCcCCHHH
Confidence 62 236788888888876443
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.79 E-value=2.7e-08 Score=90.50 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=36.1
Q ss_pred cEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc--cccCCCCCcEEEeccCCCCccc-CCCCCCCCCceEEEc
Q 007138 368 KSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS--GLHNLRQLQGIKIWNCGNLVSF-PEGGLPCAKLRRLDI 444 (616)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 444 (616)
+.++++++. ++.+|..+.. +|+.|++++|. ++.++. .+..+++|++|++++|. +..+ |.....+++|++|++
T Consensus 11 ~~l~~s~~~-l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC-CSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC-cCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEEC
Confidence 455555542 2344443322 55566665553 233332 24555555555555552 2322 333333445555555
Q ss_pred cCCccccc
Q 007138 445 SDCKRLEG 452 (616)
Q Consensus 445 ~~c~~l~~ 452 (616)
++ +.+++
T Consensus 86 s~-N~l~~ 92 (192)
T 1w8a_A 86 GE-NKIKE 92 (192)
T ss_dssp CS-CCCCE
T ss_pred CC-CcCCc
Confidence 55 34433
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=4.5e-08 Score=87.70 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred cccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccEEEecC
Q 007138 490 HRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTELVLVN 558 (616)
Q Consensus 490 ~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~l~~ 558 (616)
..+++|+.|++++| .++.++... +..+++|++|++++ +.++.+|.. +..+++|++|++++
T Consensus 73 ~~l~~L~~L~l~~N--~l~~~~~~~------~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 73 DKLTKLTILYLHEN--KLQSLPNGV------FDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp TTCTTCCEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCCccCEEECCCC--CccccCHHH------hhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecC
Confidence 44555555555554 344443321 12345555555555 234444442 34455555555555
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.72 E-value=7.5e-09 Score=114.10 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=68.1
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
++|++|++++|... .+|..+..+++|+.|++++|. ++.+|..+..+++|++|+|++| .+..+|.....+++|++|++
T Consensus 247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEEC
T ss_pred CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeC
Confidence 67777777777544 677777788888888888876 4477878888888888888887 56677777666778888888
Q ss_pred cCCcccccchhhhH
Q 007138 445 SDCKRLEGGFHRYM 458 (616)
Q Consensus 445 ~~c~~l~~~~~~~~ 458 (616)
++ +.+++.+|..+
T Consensus 324 ~~-N~l~~~~p~~~ 336 (727)
T 4b8c_D 324 EG-NPLEKQFLKIL 336 (727)
T ss_dssp TT-SCCCSHHHHHH
T ss_pred CC-CccCCCChHHH
Confidence 88 56777776644
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.71 E-value=7e-08 Score=87.70 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=59.4
Q ss_pred CcccEEEecCCCCchhhhh-hccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAE-RLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L 442 (616)
.++++|+++++......+. .+..+++|+.|++++|...+..|..+..+++|++|++++| .+..++.. ...+++|++|
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 4566666766643332222 2566677777777776644444566677777777777776 34444433 3345577777
Q ss_pred EccCCcccccchhhhHhhhcccccceeeecCCC
Q 007138 443 DISDCKRLEGGFHRYMIALHNLTNLHSLYIGGN 475 (616)
Q Consensus 443 ~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~ 475 (616)
++++ +.+++..|. .+..+++|+.|++++|
T Consensus 108 ~L~~-N~l~~~~~~---~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 108 NLYD-NQISCVMPG---SFEHLNSLTSLNLASN 136 (192)
T ss_dssp ECCS-SCCCEECTT---SSTTCTTCCEEECTTC
T ss_pred ECCC-CcCCeeCHH---HhhcCCCCCEEEeCCC
Confidence 7777 456665443 2333334444444433
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.69 E-value=1.1e-08 Score=112.76 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=77.9
Q ss_pred cccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhc
Q 007138 406 PSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIER 485 (616)
Q Consensus 406 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 485 (616)
+..+..+++|+.|++++| .+..++...+.+++|++|++++ +.++ .+|. .++++++|+.|+|++|... ..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~-N~l~-~lp~---~~~~l~~L~~L~Ls~N~l~-----~l 285 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG-NSLT-ELPA---EIKNLSNLRVLDLSHNRLT-----SL 285 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT-SCCS-CCCG---GGGGGTTCCEEECTTSCCS-----SC
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC-CcCc-ccCh---hhhCCCCCCEEeCcCCcCC-----cc
Confidence 334455556666666555 3345554444455566666665 3444 2232 3455555555555555422 12
Q ss_pred CccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccccccCc-cccEEEecCCCCCcc
Q 007138 486 GRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSSIVDLQ-NLTELVLVNCPKLKY 564 (616)
Q Consensus 486 ~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~-~L~~L~l~~c~~l~~ 564 (616)
+..+..+++|+.|++++| .+..+|.... .+++|+.|++++|+....+|..+.... .+..+++.+ +.+..
T Consensus 286 p~~~~~l~~L~~L~L~~N--~l~~lp~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~-N~l~~ 355 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDN--MVTTLPWEFG-------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRD-NRPEI 355 (727)
T ss_dssp CSSGGGGTTCSEEECCSS--CCCCCCSSTT-------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHH-CCCCC
T ss_pred ChhhcCCCCCCEEECCCC--CCCccChhhh-------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhcc-CcccC
Confidence 335677888999999886 6677776543 688999999998654334554443322 122356776 34332
Q ss_pred cCCCCCcCCcceEEEcCC
Q 007138 565 FPEKGLPSSLLQLQIYCC 582 (616)
Q Consensus 565 l~~~~~~~~L~~L~i~~c 582 (616)
..+..|..|+++++
T Consensus 356 ----~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 356 ----PLPHERRFIEINTD 369 (727)
T ss_dssp ----CCCCC---------
T ss_pred ----cCccccceeEeecc
Confidence 23445666666655
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=1.2e-06 Score=89.10 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=121.0
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
.+|+.+++.++ .+..++.....+.+|+.+.+..+ ++.++. .+..+++|+.+.+.++ +..++...+...+|+.+.
T Consensus 180 ~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKT-KITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCCEEECTTS-CCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEE
T ss_pred ccCCeeecCCC-cceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEE
Confidence 44455555443 22233333333456666666532 444432 4556666666666542 455555554444666666
Q ss_pred ccCCcccccchhhhHhhhcccccceeeecCCChHHHHH-hhhcCccccccCCccEEEEecCCCccccccccccccCCCCC
Q 007138 444 ISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKS-MIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALP 522 (616)
Q Consensus 444 l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~ 522 (616)
+.. .++.+... .|.+|++|+.+.+.++...... ..+....|..+++|+.+.+.+ .++.++... |.
T Consensus 255 lp~--~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~~a------F~ 320 (401)
T 4fdw_A 255 LPN--GVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQGL------LG 320 (401)
T ss_dssp EET--TCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECTTT------TT
T ss_pred eCC--CccEEChh---HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhhhh------hc
Confidence 632 33333222 5566666666666554311000 013344788899999999975 466665543 55
Q ss_pred CCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccCCCCC---cCCcceEEEcCCchhhhhhhcCCCCccc
Q 007138 523 LPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFPEKGL---PSSLLQLQIYCCPLIAEKCRKDGGQYWD 598 (616)
Q Consensus 523 ~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~~~~~~~w~ 598 (616)
.+++|+.+.+.. +++.|+. .+..+ +|+++++.+ +.+..++...+ ...+..|.+-... .+.|... ..|.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~~a--~~W~ 392 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPAES--VEKYKNA--NGWR 392 (401)
T ss_dssp TCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECGGG--HHHHHHS--TTGG
T ss_pred CCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCHHH--HHHhhhc--cchh
Confidence 678999999965 4777765 67788 999999998 67777776433 3578888887532 3334432 3475
Q ss_pred cc
Q 007138 599 LL 600 (616)
Q Consensus 599 ~i 600 (616)
..
T Consensus 393 ~f 394 (401)
T 4fdw_A 393 DF 394 (401)
T ss_dssp GG
T ss_pred hh
Confidence 44
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.67 E-value=1.4e-07 Score=85.72 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=47.4
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~ 443 (616)
+++++|+++++.. ..+|..+..+++|+.|++++|......+..+..+++|++|++++| .+..++.. ...+++|++|+
T Consensus 31 ~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 4566666666533 345555666666666666665533333334566666666666665 34444432 23345666666
Q ss_pred ccCCcccccc
Q 007138 444 ISDCKRLEGG 453 (616)
Q Consensus 444 l~~c~~l~~~ 453 (616)
+++ +.++..
T Consensus 109 L~~-N~l~~~ 117 (193)
T 2wfh_A 109 LHG-NDISVV 117 (193)
T ss_dssp CCS-SCCCBC
T ss_pred CCC-CCCCee
Confidence 666 445443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=1.5e-06 Score=88.35 Aligned_cols=236 Identities=10% Similarity=0.139 Sum_probs=153.7
Q ss_pred CccEEeccCCCCcccccccCCCcccccccccCCCCCcccEEEecCCCCchhhh-hhccCCCCccEEEccccccccccccc
Q 007138 330 LLEHLDISSCPSLTCIFSKNELPATLESLEVGNLPPSLKSLYVYGCSKLESIA-ERLDNNTSLETISIERCGNLKILPSG 408 (616)
Q Consensus 330 ~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~ 408 (616)
+|+.+.+.. +++. .....|.. .+|+.+.+.. .+..+. ..+..|++|+.+++.++. ++.++..
T Consensus 136 ~L~~i~l~~--~i~~-I~~~aF~~-----------~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~ 198 (401)
T 4fdw_A 136 QIAKVVLNE--GLKS-IGDMAFFN-----------STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAS 198 (401)
T ss_dssp CCSEEECCT--TCCE-ECTTTTTT-----------CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTT
T ss_pred CccEEEeCC--CccE-ECHHhcCC-----------CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechh
Confidence 577777753 2443 23233322 4577777765 344443 356778899999998754 6666664
Q ss_pred ccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCc
Q 007138 409 LHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGR 487 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 487 (616)
.-.+.+|+.+.+.+ .+..++...+ .|++|+.+++.. +++.+-.. .|.+ .+|+.+.+..+. ..+...
T Consensus 199 aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~---aF~~-~~L~~i~lp~~i-----~~I~~~ 265 (401)
T 4fdw_A 199 TFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQE---AFRE-SGITTVKLPNGV-----TNIASR 265 (401)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTT---TTTT-CCCSEEEEETTC-----CEECTT
T ss_pred hEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccc---cccc-CCccEEEeCCCc-----cEEChh
Confidence 44468999999875 3677776655 577899999875 35444332 3444 578888885542 123345
Q ss_pred cccccCCccEEEEecCCCc---cccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCc
Q 007138 488 GFHRFSSLRHLTIRGCDDD---MVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLK 563 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~---l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~ 563 (616)
+|..+++|+.+++.++... ...++. ..|..+++|+.+++.+ .++.|+. .+..+++|+.+.+.. +++
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~------~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~ 335 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHP------YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVT 335 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECT------TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCC
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECH------HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--ccc
Confidence 7889999999999885211 112333 2456789999999985 5888876 688899999999964 588
Q ss_pred ccCCCCC--cCCcceEEEcCCchhhhhhhcCCCCccccc-CCccEEEEcCe
Q 007138 564 YFPEKGL--PSSLLQLQIYCCPLIAEKCRKDGGQYWDLL-THIPHVVIDDK 611 (616)
Q Consensus 564 ~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~~~~~w~~i-~~i~~~~~~~~ 611 (616)
.+....+ + +|+++.+.++.-.. . ....+..+ .++..+.++..
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~-l----~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQ-V----FEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCB-C----CCSSCCCSCTTCCEEEECGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcc-c----ccccccCCCCCccEEEeCHH
Confidence 8887544 5 89999998863211 1 11224444 35666766543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.60 E-value=3.4e-07 Score=81.87 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=40.3
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L 442 (616)
++++.|+++++...+..+..+..+++|+.|++++|. ++.++. .+..+++|+.|++++| .+..++... ..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 445555555554332222233455556666665554 233332 3455556666666555 333444332 234455666
Q ss_pred EccCCccccc
Q 007138 443 DISDCKRLEG 452 (616)
Q Consensus 443 ~l~~c~~l~~ 452 (616)
++++ +.+++
T Consensus 106 ~l~~-N~l~~ 114 (177)
T 2o6r_A 106 ALDT-NQLKS 114 (177)
T ss_dssp ECCS-SCCSC
T ss_pred ECcC-CcceE
Confidence 6655 34443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.58 E-value=7.4e-10 Score=101.52 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=46.2
Q ss_pred cccEEEecCC-CCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEc
Q 007138 366 SLKSLYVYGC-SKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDI 444 (616)
Q Consensus 366 ~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 444 (616)
.++...+.+. +.++.+|..+..+++|+.|++++|. ++.+| .+..+++|+.|++++| .+..+|.....+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 3444444433 1234445566667777777777764 44455 5666777777777766 34445443333346666666
Q ss_pred cCCccccc
Q 007138 445 SDCKRLEG 452 (616)
Q Consensus 445 ~~c~~l~~ 452 (616)
++| .+++
T Consensus 101 ~~N-~l~~ 107 (198)
T 1ds9_A 101 SYN-QIAS 107 (198)
T ss_dssp EEE-ECCC
T ss_pred cCC-cCCc
Confidence 663 4444
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=2.5e-07 Score=98.66 Aligned_cols=84 Identities=19% Similarity=0.205 Sum_probs=38.5
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCccc--CCCCCCCCCceEE
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSF--PEGGLPCAKLRRL 442 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L 442 (616)
++|+.|++++|... .+|..+..+++|+.|++++|. ++.+| .+..+++|+.|++++| .+..+ |.....+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEE
Confidence 44555555544332 444445555555555555543 23344 4455555555555554 23333 3333334455555
Q ss_pred EccCCcccccc
Q 007138 443 DISDCKRLEGG 453 (616)
Q Consensus 443 ~l~~c~~l~~~ 453 (616)
++++ +.+++.
T Consensus 539 ~L~~-N~l~~~ 548 (567)
T 1dce_A 539 NLQG-NSLCQE 548 (567)
T ss_dssp ECTT-SGGGGS
T ss_pred EecC-CcCCCC
Confidence 5554 334443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.49 E-value=4.7e-07 Score=80.30 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=50.7
Q ss_pred CcEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCC
Q 007138 415 LQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSS 494 (616)
Q Consensus 415 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 494 (616)
.+.++++++ .++.+|..... +|++|++++ +.+++..|. .+..+++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~~--~l~~L~L~~-N~i~~~~~~-------------------------------~~~~l~~ 55 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIPT--TTQVLYLYD-NQITKLEPG-------------------------------VFDRLTQ 55 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCCT--TCSEEECCS-SCCCCCCTT-------------------------------TTTTCTT
T ss_pred CCEEEeCCC-CcCccCccCCC--CCcEEEcCC-CcCCccChh-------------------------------hhcCccc
Confidence 345555554 45555554433 666666666 455554332 2344455
Q ss_pred ccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 495 LRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 495 L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
|++|++++| .++.++... +..+++|++|++++ +.++.++. .+..+++|++|++++
T Consensus 56 L~~L~Ls~N--~l~~l~~~~------f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 56 LTRLDLDNN--QLTVLPAGV------FDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCC--CcCccChhh------ccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCC
Confidence 555555554 444444322 12355555555555 34555544 345555666666655
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.48 E-value=5.4e-07 Score=80.25 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=55.0
Q ss_pred cEEEeccCCCCcccCCCCCCCCCceEEEccCCcccccchhhhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCc
Q 007138 416 QGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSL 495 (616)
Q Consensus 416 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 495 (616)
+.++++++ .+..+|..... +|++|++++ +.+++..|. .+..+++|
T Consensus 15 ~~l~~~~n-~l~~iP~~~~~--~L~~L~Ls~-N~l~~~~~~-------------------------------~~~~l~~L 59 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIPT--DKQRLWLNN-NQITKLEPG-------------------------------VFDHLVNL 59 (174)
T ss_dssp SEEECCSS-CCSSCCSCCCT--TCSEEECCS-SCCCCCCTT-------------------------------TTTTCTTC
T ss_pred cEEEeCCC-CCCccCCCcCC--CCcEEEeCC-CCccccCHH-------------------------------HhcCCcCC
Confidence 45555554 44556554443 667777766 455554332 34455566
Q ss_pred cEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccccc-cccCccccEEEecC
Q 007138 496 RHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSSS-IVDLQNLTELVLVN 558 (616)
Q Consensus 496 ~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~l~~ 558 (616)
+.|++++| .++.++... +..+++|++|++++ +.++.+|.. +..+++|++|++++
T Consensus 60 ~~L~Ls~N--~l~~i~~~~------~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 60 QQLYFNSN--KLTAIPTGV------FDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CEEECCSS--CCCCCCTTT------TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CEEECCCC--CCCccChhH------hCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCC
Confidence 66666654 455554432 12456666666666 445565543 55666666666666
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=1.2e-09 Score=100.15 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=40.3
Q ss_pred CccEEEcccc-cccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEEccCCccccc
Q 007138 390 SLETISIERC-GNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLDISDCKRLEG 452 (616)
Q Consensus 390 ~L~~L~l~~~-~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 452 (616)
.++...+.+. +.++.+|..+..+++|++|++++| .+..+| ....+++|++|++++| .++.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~ 84 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKK 84 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECS
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Cccc
Confidence 4455555543 234556667888999999999887 455666 4445568899998884 5653
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=1.1e-05 Score=82.11 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=33.2
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVN 558 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~ 558 (616)
+|..+.+|+.++|.+ .++.+... +|..+++|+.+.+.. .++.|+. .+..+++|+.+++..
T Consensus 315 aF~~c~~L~~i~lp~---~v~~I~~~------aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY---LVEEIGKR------SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT---TCCEECTT------TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCC---cccEEhHH------hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 455666666666643 34444332 234556666666654 2555544 556666666666653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.32 E-value=1.5e-06 Score=76.95 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=29.8
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccCCcccccc
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~ 453 (616)
++|+.|++++|...+..+..+..+++|++|++++| .+..++... ..+++|++|++++ +.+++.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~ 93 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND-NQLKSI 93 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC-CccCEe
Confidence 35555555554433322344455555555555554 344444433 2334555555555 344443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.30 E-value=1.8e-06 Score=76.86 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=32.3
Q ss_pred CCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCC-CCCCCceEEEccCCcccccc
Q 007138 389 TSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGG-LPCAKLRRLDISDCKRLEGG 453 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~ 453 (616)
++|+.|++++|...+..|..+..+++|+.|++++| .+..+|... ..+++|++|++++ +.+++.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l 96 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND-NHLKSI 96 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC-Ccccee
Confidence 45556666555433333444555566666666555 444454433 2344566666655 345443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=1.1e-07 Score=95.87 Aligned_cols=137 Identities=14% Similarity=0.015 Sum_probs=64.6
Q ss_pred CcccEEEecCCCCchhhh----hhcc-CCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCC-----CC
Q 007138 365 PSLKSLYVYGCSKLESIA----ERLD-NNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPE-----GG 433 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~----~~~~-~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-----~~ 433 (616)
+.++.|++++|....... ..+. ..++|+.|++++|........ ....+++|+.|++++|. +..... ..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHH
Confidence 556666666665443222 1222 225777777777653222111 12334566777777663 321110 00
Q ss_pred -CCCCCceEEEccCCcccccchh-hhHhhhcccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecC
Q 007138 434 -LPCAKLRRLDISDCKRLEGGFH-RYMIALHNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGC 503 (616)
Q Consensus 434 -~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~ 503 (616)
.+.++|++|++++| .+++... .....+..+++|+.|++++|.....+.......+...++|++|++++|
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 12236777777764 3443221 112234455566666666665333332222334444555666666654
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=4.2e-05 Score=77.85 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=62.7
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
.+..+.+|+.+.+.+ .++.+.... |..+++|+.+++.. .++.|+. .+..+.+|+.+.+.. .++.+.
T Consensus 292 ~F~~~~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~ 358 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD---SVKFIGEEA------FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG 358 (394)
T ss_dssp TTTTCTTCCEEEECT---TCCEECTTT------TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC
T ss_pred ccccccccccccccc---ccceechhh------hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh
Confidence 567788999999966 466655432 55789999999975 4778865 788899999999975 488888
Q ss_pred CCCC--cCCcceEEEcC
Q 007138 567 EKGL--PSSLLQLQIYC 581 (616)
Q Consensus 567 ~~~~--~~~L~~L~i~~ 581 (616)
...+ +++|+++++..
T Consensus 359 ~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTBTTCTTCCEEEEEG
T ss_pred HHHhhCCCCCCEEEECC
Confidence 7654 67899999864
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=1.3e-06 Score=76.43 Aligned_cols=91 Identities=7% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhh---ccCCCcEEEccCCCCCcc
Q 007138 141 PKLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCE---LSCRLEYLRLSNCEGLVK 217 (616)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~---~~~~L~~L~l~~~~~~~~ 217 (616)
.+|+.|++++|.... .....+..+++|++|+|++|..+++ ..+..+.. .+++|++|++++|..+++
T Consensus 61 ~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD-------~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIED-------GCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCH-------HHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCH-------HHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 467888888876332 2334457888888888888887776 23444433 235688888888876653
Q ss_pred c-ccccCCCCCccEEEEcCCCCCCCC
Q 007138 218 L-PQSSLSLSSLREIEICKCSSLVSF 242 (616)
Q Consensus 218 ~-~~~~~~l~~L~~L~l~~~~~l~~~ 242 (616)
- -..+..+++|++|++++|+.+++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCch
Confidence 1 223556788888888888766653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.18 E-value=1.6e-07 Score=94.75 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=108.2
Q ss_pred CCccEEEcccccccccc----ccccc-CCCCCcEEEeccCCCCcc--cCCCCCCCCCceEEEccCCcccccchhhhHh-h
Q 007138 389 TSLETISIERCGNLKIL----PSGLH-NLRQLQGIKIWNCGNLVS--FPEGGLPCAKLRRLDISDCKRLEGGFHRYMI-A 460 (616)
Q Consensus 389 ~~L~~L~l~~~~~l~~~----~~~l~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-~ 460 (616)
+.|+.|++++|...... ...+. ..++|++|++++|. +.. +......+++|++|++++| .+++.....++ .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 48999999998744322 22233 34799999999984 332 1111112347999999995 67655433333 2
Q ss_pred h-cccccceeeecCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 461 L-HNLTNLHSLYIGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 461 ~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
+ ....+|+.|++++|.....+.......+...++|++|++++| .+..... ..+...+..+++|++|++++| .++
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N--~l~~~g~--~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGL--ELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS--SCHHHHH--HHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC--CCCcHHH--HHHHHHHhcCCCcCeEECCCC-CCC
Confidence 2 356789999999998655444444455677899999999997 3332110 001111224678999999996 455
Q ss_pred cc-----ccccccCccccEEEecCCCCCcc
Q 007138 540 RL-----SSSIVDLQNLTELVLVNCPKLKY 564 (616)
Q Consensus 540 ~i-----~~~~~~~~~L~~L~l~~c~~l~~ 564 (616)
.. ...+...++|++|++++ +.+.+
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~-N~i~~ 253 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYF-NELSS 253 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTT-SSCCH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccC-CCCCH
Confidence 43 33455679999999999 55655
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=2.9e-06 Score=84.79 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=25.6
Q ss_pred CcccEEEecCCCCchhhhhhccCCCCccEEEcccccccccccccc--cCCCCCcEEEec
Q 007138 365 PSLKSLYVYGCSKLESIAERLDNNTSLETISIERCGNLKILPSGL--HNLRQLQGIKIW 421 (616)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l--~~l~~L~~L~l~ 421 (616)
|+|+.|.++++.... ++. + ..++|+.|++..|.........+ ..+|+|++|+|+
T Consensus 172 P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 566666665552221 222 1 24566666666544322211122 256666666664
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=8.6e-06 Score=81.32 Aligned_cols=84 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred CccCCCcceeecccccccc----cccc-cCCCcccccCCCcceEeeccCCCcccccCCCCCCccEEeecCCcchh---hh
Q 007138 17 PIPFPCLETLRFENMQEWE----DWIP-LRSGQGVEWFPKLRELHIISCSKLQGTFPEHLPALEMLVIEGCEELL---VS 88 (616)
Q Consensus 17 ~~~~~~L~~L~l~~~~~~~----~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~~~~L~~L~l~~c~~l~---~~ 88 (616)
...|++|++|.+.+.. .+ +|.. .+...-+..+|+|+.|.+++|..+. ..+...++|+.|++..|..-. ..
T Consensus 135 ~~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHH
Confidence 4567889999886542 11 1211 0110111457889999988874332 222246788888888776322 12
Q ss_pred h--cCCCCccEEEeCC
Q 007138 89 V--ASLPALCKFEIGG 102 (616)
Q Consensus 89 ~--~~~~~L~~L~l~~ 102 (616)
+ ..+|+|++|+|+.
T Consensus 213 l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHSBCTTCCEEEEEC
T ss_pred HHHccCCCCcEEEEec
Confidence 2 3678888888753
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=0.00074 Score=68.53 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=43.1
Q ss_pred ccCCCCccEEEcccccccccccc-cccCCCCCcEEEeccCCCCcccCCCCC-CCCCceEEEccCCcccccchhhhHhhhc
Q 007138 385 LDNNTSLETISIERCGNLKILPS-GLHNLRQLQGIKIWNCGNLVSFPEGGL-PCAKLRRLDISDCKRLEGGFHRYMIALH 462 (616)
Q Consensus 385 ~~~~~~L~~L~l~~~~~l~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 462 (616)
+..++.|+.+.+.. .++.++. .+..|.+|+.+.+.. .++.+....+ .|.+|+.+.+.. +++.+-.. .|.
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~---aF~ 354 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPES---AFS 354 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGG---GGT
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHh---Hhh
Confidence 44556666666642 2344433 455666777776654 2455555443 456666666643 23332211 445
Q ss_pred ccccceeeecCCCh
Q 007138 463 NLTNLHSLYIGGNM 476 (616)
Q Consensus 463 ~l~~L~~L~l~~~~ 476 (616)
+|.+|+.+++.++.
T Consensus 355 ~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 355 NCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEESSCH
T ss_pred CCCCCCEEEECCce
Confidence 55555555555544
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=3e-06 Score=74.22 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=20.4
Q ss_pred CCcEEEecCCCCcccccccchhHHhcCCCccEEeeccCCCccc
Q 007138 142 KLEELEIKNIENETYVWKSHNELLQDICSLKRLTITSCPKLQS 184 (616)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 184 (616)
+|+.|++.+|.+.+. .....+..+++|++|++++|+.+++
T Consensus 115 ~L~~L~Ls~C~~ITD---~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTD---KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCH---HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCH---HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 344444444444333 2223344566666666666666654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.99 E-value=1.7e-05 Score=79.32 Aligned_cols=104 Identities=24% Similarity=0.180 Sum_probs=71.9
Q ss_pred EEEcccccccccccccccCCCCCcEEEeccCCCCcccCCC-CCCCCCceEEEccCCcccccchhhhHhhhcccccceeee
Q 007138 393 TISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEG-GLPCAKLRRLDISDCKRLEGGFHRYMIALHNLTNLHSLY 471 (616)
Q Consensus 393 ~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~l~~L~~L~ 471 (616)
.++.+++..++.+|. +..+++|+.|+|+++..+..++.. ...+++|++|++++ ++++++.|.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~--------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPD--------------- 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTT---------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHH---------------
Confidence 456666535777887 888888888888763356666643 33556788888887 467766553
Q ss_pred cCCChHHHHHhhhcCccccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccc
Q 007138 472 IGGNMEIWKSMIERGRGFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLE 539 (616)
Q Consensus 472 l~~~~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 539 (616)
.|..+++|+.|++++| .+..++... +..+ .|+.|++.+++ +.
T Consensus 75 ----------------~~~~l~~L~~L~l~~N--~l~~~~~~~------~~~~-~L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 75 ----------------AFHFTPRLSRLNLSFN--ALESLSWKT------VQGL-SLQELVLSGNP-LH 116 (347)
T ss_dssp ----------------GGGSCSCCCEEECCSS--CCSCCCSTT------TCSC-CCCEEECCSSC-CC
T ss_pred ----------------HhcCCcCCCEEeCCCC--ccceeCHHH------cccC-CceEEEeeCCC-cc
Confidence 4577889999999987 777777654 1123 39999999844 44
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.0015 Score=66.15 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=6.5
Q ss_pred hHHhcCCCccEEeec
Q 007138 163 ELLQDICSLKRLTIT 177 (616)
Q Consensus 163 ~~~~~l~~L~~L~l~ 177 (616)
.+|..+.+|+.+.+.
T Consensus 81 ~AF~~C~~L~~i~~~ 95 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQ 95 (394)
T ss_dssp TTTTTCTTCCEEEEG
T ss_pred HHhhCCccCceEeec
Confidence 334444444444443
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.74 E-value=8.9e-05 Score=73.97 Aligned_cols=87 Identities=18% Similarity=0.183 Sum_probs=61.5
Q ss_pred CcccEEEecC-CCCchhhhhhccCCCCccEEEcccccccccccccccCCCCCcEEEeccCCCCcccCCCCCCCCCceEEE
Q 007138 365 PSLKSLYVYG-CSKLESIAERLDNNTSLETISIERCGNLKILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCAKLRRLD 443 (616)
Q Consensus 365 ~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 443 (616)
.+|+.|++++ |......+..+..+++|+.|++++|...+..|..+..+++|+.|+|++| .+..+|...+....|+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCCCCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCCceEEE
Confidence 6788888886 5444333456778888999999887644444556788889999999887 5667776665543588888
Q ss_pred ccCCcccccc
Q 007138 444 ISDCKRLEGG 453 (616)
Q Consensus 444 l~~c~~l~~~ 453 (616)
+.+ +.+...
T Consensus 110 l~~-N~~~c~ 118 (347)
T 2ifg_A 110 LSG-NPLHCS 118 (347)
T ss_dssp CCS-SCCCCC
T ss_pred eeC-CCccCC
Confidence 887 455543
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.50 E-value=0.019 Score=57.70 Aligned_cols=69 Identities=7% Similarity=0.109 Sum_probs=44.4
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCcccccccc-ccccCccccEEEecCCCCCcccC
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCPKLKYFP 566 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~ 566 (616)
.+..+.+|+.+.+.++ .++.++... |..+++|+.+.+.. .++.|.. .+..+++|+++.+.. .++.+.
T Consensus 281 aF~~c~~L~~i~l~~~--~i~~I~~~a------F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNS--AIETLEPRV------FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCEEEECCT--TCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCEEC
T ss_pred cccccccccccccccc--ccceehhhh------hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCEEc
Confidence 5677788888888653 455555432 45677888888854 4666655 567777777777653 355555
Q ss_pred CC
Q 007138 567 EK 568 (616)
Q Consensus 567 ~~ 568 (616)
..
T Consensus 349 ~~ 350 (379)
T 4h09_A 349 SG 350 (379)
T ss_dssp TT
T ss_pred hh
Confidence 43
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.48 E-value=0.037 Score=55.47 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=24.5
Q ss_pred cccccCCccEEEEecCCCccccccccccccCCCCCCCCccceEecccCccccccc
Q 007138 488 GFHRFSSLRHLTIRGCDDDMVSFPLEDKRLGTALPLPASLTTLWISRFPNLERLS 542 (616)
Q Consensus 488 ~~~~l~~L~~L~i~~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 542 (616)
+|..+.+|+.+.|.. .++.+.... |..+++|+.+.+-. .++.|.
T Consensus 305 aF~~c~~L~~i~lp~---~l~~I~~~a------F~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 305 VFMDCVKLSSVTLPT---ALKTIQVYA------FKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCCCCCCT--TCCEEC
T ss_pred hhcCCCCCCEEEcCc---cccEEHHHH------hhCCCCCCEEEECC--ccCEEc
Confidence 566677777777744 344444322 34556666666643 344444
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=0.00022 Score=63.75 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=5.3
Q ss_pred CCCCccEEEeCCC
Q 007138 91 SLPALCKFEIGGC 103 (616)
Q Consensus 91 ~~~~L~~L~l~~~ 103 (616)
..+.|++|++++|
T Consensus 34 ~~~~L~~L~L~~n 46 (185)
T 1io0_A 34 NDPDLEEVNLNNI 46 (185)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCCCCEEEecCC
Confidence 3344444444443
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=8.2e-05 Score=66.67 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=18.2
Q ss_pred hccCCCCccEEEccccccccc-----ccccccCCCCCcEEEeccC
Q 007138 384 RLDNNTSLETISIERCGNLKI-----LPSGLHNLRQLQGIKIWNC 423 (616)
Q Consensus 384 ~~~~~~~L~~L~l~~~~~l~~-----~~~~l~~l~~L~~L~l~~~ 423 (616)
.+...++|++|++++|..++. +...+...++|++|++++|
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 344455555555555512221 2223344455555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.40 E-value=0.0025 Score=60.12 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=44.1
Q ss_pred cCCCcEEEccCCCCCc--ccccccCCCCCccEEEEcCCCCCCCCCCCCCCC--CCcEEEccCCCCcc
Q 007138 201 SCRLEYLRLSNCEGLV--KLPQSSLSLSSLREIEICKCSSLVSFPEVALPS--KLKNIWISTCDALK 263 (616)
Q Consensus 201 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~L~~L~l~~~~~l~ 263 (616)
+++|+.|+|++|.... .+|..++.+++|+.|++++| .++.+..+..+. +|++|++.+|+.-.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCcc
Confidence 4789999999887643 44556667889999999887 466554443333 88888888887443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.08 E-value=0.011 Score=55.81 Aligned_cols=83 Identities=17% Similarity=0.065 Sum_probs=38.9
Q ss_pred CCCCccEEEcccccccc--cccccccCCCCCcEEEeccCCCCcccCCCCCCCC--CceEEEccCCcccccchhh----hH
Q 007138 387 NNTSLETISIERCGNLK--ILPSGLHNLRQLQGIKIWNCGNLVSFPEGGLPCA--KLRRLDISDCKRLEGGFHR----YM 458 (616)
Q Consensus 387 ~~~~L~~L~l~~~~~l~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~~~~----~~ 458 (616)
.+++|+.|++++|.... .++..+..+++|+.|+|++| .+..+.. ...++ +|++|+++++ .+.+.+|. ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~-l~~l~~l~L~~L~L~~N-pl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE-LDKIKGLKLEELWLDGN-SLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG-GGGGTTSCCSEEECTTS-TTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh-hhhcccCCcceEEccCC-cCccccCcchhHHH
Confidence 34556666666554322 23333445666666666655 3332211 11111 5666666663 34443321 11
Q ss_pred hhhcccccceeeec
Q 007138 459 IALHNLTNLHSLYI 472 (616)
Q Consensus 459 ~~~~~l~~L~~L~l 472 (616)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23556667776653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.71 E-value=0.21 Score=41.13 Aligned_cols=36 Identities=28% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCccceEecccCcccccccc-ccccCccccEEEecCCC
Q 007138 524 PASLTTLWISRFPNLERLSS-SIVDLQNLTELVLVNCP 560 (616)
Q Consensus 524 ~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~ 560 (616)
+++|++|++++ +.|+.++. .+..+++|++|+|.+++
T Consensus 30 p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 30 PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 56778888877 56777776 45667777777777743
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.57 E-value=0.13 Score=45.63 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=43.7
Q ss_pred ccCCCCCcEEEeccCCCCcc-----cCCCCCCCCCceEEEccCCcccccchhhhH-hhhcccccceeeecCCChHHHHHh
Q 007138 409 LHNLRQLQGIKIWNCGNLVS-----FPEGGLPCAKLRRLDISDCKRLEGGFHRYM-IALHNLTNLHSLYIGGNMEIWKSM 482 (616)
Q Consensus 409 l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 482 (616)
+.+-+.|++|+++++..+.. +......-+.|+.|++++| .+.+.--..+ ..+..-++|+.|+|++|.....+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 34556788888876533331 1111122237888888874 4544321111 233444455555555554333333
Q ss_pred hhcCccccccCCccEEEEec
Q 007138 483 IERGRGFHRFSSLRHLTIRG 502 (616)
Q Consensus 483 ~~~~~~~~~l~~L~~L~i~~ 502 (616)
....+++..-..|++|++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 32223333333444444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.49 E-value=0.43 Score=39.19 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=40.6
Q ss_pred eEecccCcccc--ccccccccCccccEEEecCCCCCcccCCCCC--cCCcceEEEcCCc
Q 007138 529 TLWISRFPNLE--RLSSSIVDLQNLTELVLVNCPKLKYFPEKGL--PSSLLQLQIYCCP 583 (616)
Q Consensus 529 ~L~l~~c~~l~--~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 583 (616)
.++.++ ..++ .+|..+ .++|++|+|++ |+++.++...+ +++|++|++.++|
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 566776 5677 788543 34799999999 99999998654 6899999999876
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.82 E-value=0.95 Score=40.06 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=53.5
Q ss_pred cchhHHhcCCCccEEeeccCCCccccchhhhhhHHhhhhhccCCCcEEEccCCCCCc----ccccccCCCCCccEEEEcC
Q 007138 160 SHNELLQDICSLKRLTITSCPKLQSLVAEEEKDQQQQLCELSCRLEYLRLSNCEGLV----KLPQSSLSLSSLREIEICK 235 (616)
Q Consensus 160 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 235 (616)
........-+.|++|+|+++..+..-... .....|. .-..|+.|+|++|..-. .+...+..-+.|++|++++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~---~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIR---SLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHH---HHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHH---HHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence 34445566678888888765344432111 1222222 22678888888877633 2333344566788888888
Q ss_pred CCCCCCCC------CCCCCCCCcEEEccCC
Q 007138 236 CSSLVSFP------EVALPSKLKNIWISTC 259 (616)
Q Consensus 236 ~~~l~~~~------~~~~~~~L~~L~l~~~ 259 (616)
|. +++-. .+..-..|++|+++++
T Consensus 108 N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 108 NF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred Cc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 73 44322 1233456888888765
Done!