BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007140
(616 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZF3|CGEP_ARATH Probable glutamyl endopeptidase, chloroplastic OS=Arabidopsis
thaliana GN=GEP PE=2 SV=2
Length = 960
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/599 (70%), Positives = 500/599 (83%), Gaps = 3/599 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TG+GIH+LLPD +L PEKE+ G PDG KINFV+WS DGK +AFS+RVDE N S
Sbjct: 174 MSFYTGLGIHQLLPDGTLSPEKEITGIPDGGKINFVTWSNDGKHLAFSIRVDENGN--SS 231
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
K VW+AD ETG A+PLF S DI LNA+F SFVW++NSTLL+ TIPSSR +PPKK +VP
Sbjct: 232 KPVVWVADVETGVARPLFNSQDIFLNAIFESFVWIDNSTLLVSTIPSSRGEPPKKPLVPS 291
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPK SNE K ++ R +LLKDEYD LFDYY ++QLVL SLDGT K+ G PAVYT++
Sbjct: 292 GPKTLSNETKTVVQVRTFQDLLKDEYDADLFDYYASSQLVLASLDGTVKEVGVPAVYTSL 351
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PS D KY+L++S+HRPYS+ VPC RF +KV+VWTTDG+ VR+LCDLP AEDIP+ NSV
Sbjct: 352 DPSTDHKYLLVSSLHRPYSFIVPCGRFPKKVEVWTTDGRFVRQLCDLPLAEDIPIASNSV 411
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+GMRSI+WRADKPSTL W E QD GDA +EVSPRDI+Y Q AEP GE+PE+LHKLDLR
Sbjct: 412 RKGMRSINWRADKPSTL-WAETQDGGDAKMEVSPRDIVYMQSAEPLAGEEPEVLHKLDLR 470
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ +SWCDD+LALV E+WYKT +TRTW++ PGS DV+PR+LFDR E+VYSDPGS M+ R
Sbjct: 471 YGGISWCDDTLALVYESWYKTRRTRTWVISPGSNDVSPRILFDRSSEDVYSDPGSTMLRR 530
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T GT VIAKIKKENDE Y+LLNG G TP+GN+PFLDLFDINTG+KERIWES++EKYFE
Sbjct: 531 TDAGTYVIAKIKKENDEGTYVLLNGSGATPQGNVPFLDLFDINTGNKERIWESDKEKYFE 590
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ Q E D+ + +LKILTSKESKTE TQY + WP +K QITNFPHPYP LASL
Sbjct: 591 TVVALMSDQKEGDLKMEELKILTSKESKTENTQYSLQLWPDRKVQQITNFPHPYPQLASL 650
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
QKEMI+YQRKDGV LTATLYLPPGYD SKDGPLPCLFW+YP ++KSKDAAGQVRGSPNEF
Sbjct: 651 QKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEF 710
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVG 599
+G+ TS+L++LARRFA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAAVEEVVRRGV
Sbjct: 711 AGIGSTSALLWLARRFAILSGPTIPIIGEGDEEANDRYVEQLVASAEAAVEEVVRRGVA 769
>sp|Q10MJ1|CGEP_ORYSJ Probable glutamyl endopeptidase, chloroplastic OS=Oryza sativa
subsp. japonica GN=GEP PE=2 SV=1
Length = 938
Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/601 (69%), Positives = 499/601 (83%), Gaps = 2/601 (0%)
Query: 1 MPFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSC 60
M F+TGIGIH+L+ D +LGPEK VHGYP+GA+INFV+WS DG+ ++FSVRVDEEDN S
Sbjct: 155 MSFYTGIGIHKLMDDGTLGPEKVVHGYPEGARINFVTWSQDGRHLSFSVRVDEEDNTSG- 213
Query: 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120
KLR+WIAD E+GEA+PLF+SP+I LNA+F SFVWVNNSTLL+ TIP SR PP+K VP
Sbjct: 214 KLRLWIADVESGEARPLFKSPEIYLNAIFDSFVWVNNSTLLVCTIPLSRGAPPQKPSVPS 273
Query: 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAV 180
GPKIQSNE N++ R +LLKDEYD LFDYY T+QLVL S DGT K G PAVYT++
Sbjct: 274 GPKIQSNETSNVVQVRTFQDLLKDEYDADLFDYYATSQLVLASFDGTVKPIGPPAVYTSI 333
Query: 181 EPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240
+PSPD KY++I+S+HRPYSY VPC RF +KV++WT DG+ +RELCDLP AEDIP+ +SV
Sbjct: 334 DPSPDDKYLMISSIHRPYSYIVPCGRFPKKVELWTVDGEFIRELCDLPLAEDIPIATSSV 393
Query: 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLR 300
R+G RSI WR DKP+ LYWVE QD GDA VEVSPRDI+Y + AEP GE+PEILHKLDLR
Sbjct: 394 RKGKRSIYWRPDKPAMLYWVETQDGGDAKVEVSPRDIVYMENAEPINGEQPEILHKLDLR 453
Query: 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360
+ SWCD+SLALV E+WYKT +TRTW++ P KDV+PR+LFDR E+VYSDPGSPM+ R
Sbjct: 454 YAGTSWCDESLALVYESWYKTRKTRTWVISPDKKDVSPRILFDRSSEDVYSDPGSPMLRR 513
Query: 361 TSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFE 420
T+ GT VIAK+KK+ DE YILLNG G TPEGN+PFLDLFDINTGSKERIW+S++EKY+E
Sbjct: 514 TAMGTYVIAKVKKQ-DENTYILLNGMGATPEGNVPFLDLFDINTGSKERIWQSDKEKYYE 572
Query: 421 TAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL 480
T VAL+ + + ++ L +LKILTSKESKTE TQY++ WP KK QIT+FPHPYP LASL
Sbjct: 573 TVVALMSDKTDGELPLEKLKILTSKESKTENTQYYLQIWPEKKQVQITDFPHPYPQLASL 632
Query: 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEF 540
KEMI+YQRKDGV LTATLYLPPGYD S+DGPLPCL W+YP ++KSKDAAGQVRGSPNEF
Sbjct: 633 YKEMIRYQRKDGVQLTATLYLPPGYDPSQDGPLPCLVWSYPGEFKSKDAAGQVRGSPNEF 692
Query: 541 SGMTPTSSLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGL 600
G+ TS L++LAR FA+L+GP+IPIIGEGD+ NDR+VEQLV+SAEAA EEVVRRGV
Sbjct: 693 PGIGATSPLLWLARGFAILSGPTIPIIGEGDEEANDRYVEQLVTSAEAAAEEVVRRGVAH 752
Query: 601 P 601
P
Sbjct: 753 P 753
>sp|Q2LRP7|TOLB_SYNAS Protein TolB OS=Syntrophus aciditrophicus (strain SB) GN=tolB PE=3
SV=2
Length = 452
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86
F SWSPDG+ + FS+R S + R+ I +A T E + L+ES D CL
Sbjct: 396 FPSWSPDGRFLTFSLR-------SGGRSRINILNANTLEVRTLYESTDRCLG 440
>sp|B7KSK7|TRPA_METC4 Tryptophan synthase alpha chain OS=Methylobacterium
chloromethanicum (strain CM4 / NCIMB 13688) GN=trpA PE=3
SV=1
Length = 280
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 172 GTPAVYTAVEPSPDQKYVLITSMHRP-YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230
GT A+ DQ V++ + P ++Y VP F + Q DG +V DLPP
Sbjct: 81 GTLALVRRFREGDDQTPVVLMGYYNPIHTYGVP--HFLEDAQAAGIDGLIV---VDLPPE 135
Query: 231 EDIPVCYNSVREGMRSISWRADKPST 256
ED +C ++ +G+ I R P+T
Sbjct: 136 EDEELCLPALEKGLAFI--RLATPTT 159
>sp|B1ZLY7|TRPA_METPB Tryptophan synthase alpha chain OS=Methylobacterium populi (strain
ATCC BAA-705 / NCIMB 13946 / BJ001) GN=trpA PE=3 SV=1
Length = 278
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 172 GTPAVYTAVEPSPDQKYVLITSMHRP-YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230
GT A+ D+ V++ + P ++Y VP RF + Q DG +V DLPP
Sbjct: 81 GTLALVRRFREGDDRTPVVLMGYYNPIHTYGVP--RFLEDAQAAGIDGLIV---VDLPPE 135
Query: 231 EDIPVCYNSVREGMRSISWRADKPST 256
ED +C + +G+ I R P+T
Sbjct: 136 EDEELCLPAREKGLAFI--RLATPTT 159
>sp|Q6MA25|TOLB_PARUW Protein TolB OS=Protochlamydia amoebophila (strain UWE25) GN=tolB
PE=3 SV=1
Length = 469
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81
+WSPDG +IA+ R D ++WI D T + K L + P
Sbjct: 374 AWSPDGTKIAYCSRTD-------GIRQIWIYDFTTNQEKQLTQGP 411
>sp|A9VWE9|TRPA_METEP Tryptophan synthase alpha chain OS=Methylobacterium extorquens
(strain PA1) GN=trpA PE=3 SV=1
Length = 280
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 172 GTPAVYTAVEPSPDQKYVLITSMHRP-YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230
GT A+ D+ V++ + P ++Y VP F + Q DG +V DLPP
Sbjct: 81 GTLALVRRFREGDDRTPVVLMGYYNPIHTYGVP--HFLEDAQAAGIDGLIV---VDLPPE 135
Query: 231 EDIPVCYNSVREGMRSISWRADKPST 256
ED +C ++ +G+ I R P+T
Sbjct: 136 EDEELCLPALEKGLAFI--RLATPTT 159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 252,730,609
Number of Sequences: 539616
Number of extensions: 11481046
Number of successful extensions: 26004
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 25987
Number of HSP's gapped (non-prelim): 23
length of query: 616
length of database: 191,569,459
effective HSP length: 124
effective length of query: 492
effective length of database: 124,657,075
effective search space: 61331280900
effective search space used: 61331280900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)