Query 007140
Match_columns 616
No_of_seqs 203 out of 2152
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 19:29:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 7.9E-30 1.7E-34 278.3 38.1 157 434-609 318-480 (620)
2 PRK10115 protease 2; Provision 100.0 3.6E-27 7.9E-32 258.7 41.6 158 436-609 370-531 (686)
3 KOG2281 Dipeptidyl aminopeptid 99.9 6.7E-23 1.4E-27 206.5 27.3 206 377-608 514-733 (867)
4 PRK04043 tolB translocation pr 99.9 1.7E-20 3.8E-25 194.6 28.6 231 4-333 168-401 (419)
5 PRK01029 tolB translocation pr 99.9 1.6E-20 3.4E-25 196.4 28.5 251 4-364 164-426 (428)
6 PRK03629 tolB translocation pr 99.9 2.9E-20 6.3E-25 195.2 29.9 235 3-341 177-413 (429)
7 PRK05137 tolB translocation pr 99.9 5.1E-20 1.1E-24 194.6 28.9 235 4-341 181-419 (435)
8 PRK04792 tolB translocation pr 99.9 5.4E-19 1.2E-23 186.4 30.1 227 5-333 198-426 (448)
9 PRK02889 tolB translocation pr 99.8 9.5E-19 2.1E-23 184.0 29.0 227 5-333 176-404 (427)
10 PRK01029 tolB translocation pr 99.8 1.9E-18 4.2E-23 180.7 30.4 265 34-413 140-413 (428)
11 PRK05137 tolB translocation pr 99.8 2.1E-18 4.6E-23 182.2 30.0 231 42-373 165-397 (435)
12 PRK04922 tolB translocation pr 99.8 1.9E-18 4.2E-23 182.3 28.6 233 5-341 184-418 (433)
13 PRK00178 tolB translocation pr 99.8 2.3E-18 5E-23 182.3 29.0 225 7-333 181-407 (430)
14 PRK03629 tolB translocation pr 99.8 1.3E-17 2.9E-22 175.2 30.1 228 43-372 164-393 (429)
15 PRK04043 tolB translocation pr 99.8 1.9E-17 4.1E-22 172.0 29.9 225 43-372 155-387 (419)
16 PRK04792 tolB translocation pr 99.8 7.2E-17 1.6E-21 170.3 30.5 230 42-373 182-413 (448)
17 PRK01742 tolB translocation pr 99.8 4E-17 8.7E-22 172.0 28.2 226 5-341 184-411 (429)
18 PRK02889 tolB translocation pr 99.8 7.9E-17 1.7E-21 169.5 29.8 227 43-374 164-392 (427)
19 PRK04922 tolB translocation pr 99.8 7.7E-17 1.7E-21 170.2 29.3 231 42-373 167-399 (433)
20 PRK00178 tolB translocation pr 99.8 1.1E-16 2.5E-21 169.3 30.2 232 41-373 161-394 (430)
21 KOG2100 Dipeptidyl aminopeptid 99.8 6.4E-16 1.4E-20 170.5 36.1 241 323-609 365-615 (755)
22 PF00930 DPPIV_N: Dipeptidyl p 99.7 2.6E-16 5.6E-21 161.4 23.8 310 3-452 21-353 (353)
23 TIGR02800 propeller_TolB tol-p 99.7 7.1E-15 1.5E-19 155.4 28.1 227 5-333 170-398 (417)
24 PRK01742 tolB translocation pr 99.7 2E-14 4.4E-19 151.5 28.4 222 42-372 168-391 (429)
25 COG4946 Uncharacterized protei 99.7 2.5E-13 5.5E-18 132.8 30.5 367 5-448 59-510 (668)
26 TIGR02800 propeller_TolB tol-p 99.7 1.2E-13 2.7E-18 145.9 30.0 233 39-374 152-386 (417)
27 COG0823 TolB Periplasmic compo 99.6 8.1E-14 1.8E-18 143.7 23.9 218 20-333 184-403 (425)
28 PF14583 Pectate_lyase22: Olig 99.6 1.8E-12 3.8E-17 128.1 30.0 343 13-460 15-383 (386)
29 COG1770 PtrB Protease II [Amin 99.6 2.5E-11 5.4E-16 125.6 37.2 157 437-609 373-534 (682)
30 COG0823 TolB Periplasmic compo 99.6 1.1E-13 2.4E-18 142.6 18.7 167 5-260 218-387 (425)
31 PF00930 DPPIV_N: Dipeptidyl p 99.5 1E-11 2.3E-16 127.4 29.1 292 39-471 1-327 (353)
32 PF14583 Pectate_lyase22: Olig 99.3 7.5E-10 1.6E-14 109.7 24.1 300 4-383 59-379 (386)
33 COG1505 Serine proteases of th 99.1 2.8E-10 6.1E-15 116.4 12.1 155 435-608 348-506 (648)
34 PF00326 Peptidase_S9: Prolyl 99.1 2.4E-11 5.3E-16 115.6 3.4 63 546-609 5-71 (213)
35 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 2.9E-07 6.2E-12 92.3 32.4 244 6-371 12-267 (300)
36 COG4946 Uncharacterized protei 99.1 1.5E-07 3.3E-12 93.0 26.4 285 21-374 218-510 (668)
37 KOG2237 Predicted serine prote 99.0 2.6E-09 5.7E-14 109.9 13.0 157 437-609 392-556 (712)
38 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 3.9E-06 8.5E-11 84.0 34.0 270 61-464 10-283 (300)
39 PF10282 Lactonase: Lactonase, 99.0 3.8E-07 8.3E-12 93.4 26.0 291 5-410 13-331 (345)
40 PRK11028 6-phosphogluconolacto 98.9 5.5E-06 1.2E-10 84.5 30.7 85 5-104 12-97 (330)
41 PF08662 eIF2A: Eukaryotic tra 98.8 1.5E-07 3.3E-12 87.4 16.7 147 33-255 8-157 (194)
42 PF02897 Peptidase_S9_N: Proly 98.8 4E-06 8.7E-11 88.5 27.3 127 35-218 128-261 (414)
43 COG3458 Acetyl esterase (deace 98.8 1.7E-08 3.7E-13 93.5 7.9 109 480-609 54-183 (321)
44 COG2706 3-carboxymuconate cycl 98.8 2.6E-05 5.6E-10 75.5 29.7 303 5-410 16-330 (346)
45 PF08662 eIF2A: Eukaryotic tra 98.7 5.7E-07 1.2E-11 83.6 16.2 144 5-221 39-183 (194)
46 PF05448 AXE1: Acetyl xylan es 98.7 5.1E-08 1.1E-12 97.5 9.0 109 480-609 54-182 (320)
47 PRK13616 lipoprotein LpqB; Pro 98.6 1.3E-06 2.9E-11 94.4 18.5 115 32-193 351-466 (591)
48 COG2706 3-carboxymuconate cycl 98.6 0.00033 7.1E-09 68.1 32.0 171 247-468 150-331 (346)
49 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00023 5E-09 71.6 32.2 119 41-221 11-140 (352)
50 KOG0271 Notchless-like WD40 re 98.6 1.2E-05 2.6E-10 77.8 20.9 58 32-104 117-175 (480)
51 PRK11028 6-phosphogluconolacto 98.5 0.00085 1.8E-08 68.4 32.5 154 177-371 82-246 (330)
52 KOG0291 WD40-repeat-containing 98.4 0.00049 1.1E-08 72.7 29.8 225 32-372 309-540 (893)
53 KOG0318 WD40 repeat stress pro 98.4 0.0005 1.1E-08 69.6 28.5 136 32-194 192-340 (603)
54 cd00200 WD40 WD40 domain, foun 98.4 0.00042 9.1E-09 67.8 28.2 193 32-333 11-208 (289)
55 cd00200 WD40 WD40 domain, foun 98.4 0.00027 5.9E-09 69.2 26.7 222 32-371 53-280 (289)
56 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00079 1.7E-08 67.8 29.5 90 5-104 27-122 (352)
57 KOG0305 Anaphase promoting com 98.4 5.3E-05 1.2E-09 78.3 21.5 249 5-372 197-451 (484)
58 KOG0293 WD40 repeat-containing 98.4 1.8E-05 3.9E-10 77.4 16.3 229 32-330 271-513 (519)
59 KOG0318 WD40 repeat stress pro 98.3 0.001 2.3E-08 67.4 27.6 70 301-382 193-262 (603)
60 KOG0973 Histone transcription 98.3 3.1E-05 6.8E-10 84.6 17.7 64 176-260 173-237 (942)
61 KOG1446 Histone H3 (Lys4) meth 98.3 0.0017 3.6E-08 62.0 26.7 230 32-371 16-251 (311)
62 PF02129 Peptidase_S15: X-Pro 98.3 3E-06 6.5E-11 83.8 9.2 104 491-609 1-108 (272)
63 PF12715 Abhydrolase_7: Abhydr 98.3 3.5E-06 7.7E-11 83.6 9.5 120 480-608 86-232 (390)
64 KOG2314 Translation initiation 98.3 0.00089 1.9E-08 68.3 26.3 299 32-461 212-526 (698)
65 KOG0279 G protein beta subunit 98.3 0.00019 4E-09 67.1 19.7 226 32-371 65-302 (315)
66 PF10282 Lactonase: Lactonase, 98.2 0.0019 4.1E-08 66.2 28.9 235 176-468 88-332 (345)
67 PRK13616 lipoprotein LpqB; Pro 98.2 2.6E-05 5.5E-10 84.5 15.0 88 3-105 377-466 (591)
68 KOG2055 WD40 repeat protein [G 98.2 0.00015 3.3E-09 72.1 18.2 202 32-329 259-466 (514)
69 PRK05077 frsA fermentation/res 98.2 1.3E-05 2.9E-10 83.7 11.7 103 481-609 167-272 (414)
70 KOG0293 WD40 repeat-containing 98.2 5.7E-05 1.2E-09 73.9 14.8 193 32-333 226-426 (519)
71 KOG0315 G-protein beta subunit 98.1 0.00084 1.8E-08 61.8 20.9 231 22-371 34-277 (311)
72 PF02239 Cytochrom_D1: Cytochr 98.1 0.0029 6.3E-08 65.0 27.9 108 44-224 6-116 (369)
73 TIGR00976 /NonD putative hydro 98.1 8.2E-06 1.8E-10 89.0 9.6 102 488-609 2-104 (550)
74 PF02239 Cytochrom_D1: Cytochr 98.1 0.0016 3.5E-08 66.9 25.1 129 27-224 74-209 (369)
75 KOG4497 Uncharacterized conser 98.1 8E-05 1.7E-09 70.9 13.7 131 35-254 13-146 (447)
76 KOG0272 U4/U6 small nuclear ri 98.1 0.00031 6.6E-09 69.2 17.6 194 32-329 177-374 (459)
77 KOG2055 WD40 repeat protein [G 98.1 0.00069 1.5E-08 67.6 20.1 231 30-372 213-455 (514)
78 KOG1407 WD40 repeat protein [F 98.0 0.0035 7.5E-08 58.3 22.8 225 32-371 22-250 (313)
79 KOG4497 Uncharacterized conser 98.0 0.00022 4.8E-09 68.0 15.5 59 32-104 93-151 (447)
80 PRK13604 luxD acyl transferase 98.0 2.8E-05 6.1E-10 76.3 9.8 98 486-608 13-114 (307)
81 cd00312 Esterase_lipase Estera 98.0 2.5E-05 5.3E-10 84.5 10.1 96 491-608 77-182 (493)
82 KOG0272 U4/U6 small nuclear ri 97.9 0.00016 3.4E-09 71.3 13.1 191 32-327 263-457 (459)
83 KOG0273 Beta-transducin family 97.9 0.0018 3.8E-08 64.9 20.4 270 32-371 237-512 (524)
84 KOG0266 WD40 repeat-containing 97.9 0.0012 2.7E-08 70.2 20.5 190 32-329 161-363 (456)
85 KOG2139 WD40 repeat protein [G 97.8 0.00026 5.7E-09 68.4 12.3 73 18-104 184-256 (445)
86 PF07676 PD40: WD40-like Beta 97.8 4.1E-05 8.8E-10 50.4 4.8 38 22-66 2-39 (39)
87 PRK10566 esterase; Provisional 97.8 0.00011 2.4E-09 71.6 9.9 99 489-609 6-114 (249)
88 KOG2314 Translation initiation 97.8 0.016 3.5E-07 59.5 25.0 74 30-104 249-323 (698)
89 KOG0291 WD40-repeat-containing 97.7 0.029 6.2E-07 59.8 26.2 59 32-104 352-410 (893)
90 COG0412 Dienelactone hydrolase 97.7 0.00031 6.7E-09 67.3 11.2 106 482-609 2-119 (236)
91 PTZ00421 coronin; Provisional 97.7 0.051 1.1E-06 58.1 28.3 147 176-371 127-278 (493)
92 TIGR01840 esterase_phb esteras 97.7 0.00012 2.5E-09 69.5 7.4 96 497-609 1-102 (212)
93 KOG1407 WD40 repeat protein [F 97.7 0.017 3.6E-07 53.9 20.7 59 32-104 66-124 (313)
94 COG2936 Predicted acyl esteras 97.7 0.00014 3E-09 76.4 8.3 106 481-608 18-130 (563)
95 KOG1446 Histone H3 (Lys4) meth 97.7 0.025 5.5E-07 54.2 22.4 101 176-315 189-292 (311)
96 PF08450 SGL: SMP-30/Gluconola 97.6 0.018 3.9E-07 55.9 22.6 195 35-333 4-214 (246)
97 COG3509 LpqC Poly(3-hydroxybut 97.6 0.00019 4.2E-09 68.3 7.9 104 483-608 36-150 (312)
98 KOG0315 G-protein beta subunit 97.6 0.012 2.6E-07 54.5 18.6 220 5-331 61-289 (311)
99 KOG0279 G protein beta subunit 97.6 0.074 1.6E-06 50.2 24.9 197 32-333 17-223 (315)
100 KOG2096 WD40 repeat protein [G 97.5 0.013 2.8E-07 56.1 18.7 38 157-194 209-248 (420)
101 PF02897 Peptidase_S9_N: Proly 97.5 0.02 4.4E-07 60.4 23.0 138 178-343 127-274 (414)
102 KOG2315 Predicted translation 97.5 0.028 6.1E-07 57.9 22.3 235 6-330 147-390 (566)
103 PF06433 Me-amine-dh_H: Methyl 97.5 0.12 2.5E-06 51.3 26.2 214 178-465 98-325 (342)
104 PRK10162 acetyl esterase; Prov 97.5 0.00061 1.3E-08 68.9 10.2 101 481-609 56-161 (318)
105 KOG0266 WD40 repeat-containing 97.5 0.024 5.1E-07 60.5 22.4 136 32-255 205-348 (456)
106 PTZ00421 coronin; Provisional 97.4 0.075 1.6E-06 56.9 25.5 199 32-333 77-291 (493)
107 TIGR02171 Fb_sc_TIGR02171 Fibr 97.4 0.0063 1.4E-07 67.1 17.2 85 6-104 330-417 (912)
108 PTZ00420 coronin; Provisional 97.4 0.24 5.1E-06 53.7 29.0 117 175-333 126-249 (568)
109 COG2272 PnbA Carboxylesterase 97.4 0.00061 1.3E-08 69.9 8.9 102 489-608 76-186 (491)
110 KOG0286 G-protein beta subunit 97.4 0.049 1.1E-06 51.7 20.0 214 9-327 123-342 (343)
111 PLN02298 hydrolase, alpha/beta 97.3 0.0023 5.1E-08 65.2 12.3 107 477-606 27-138 (330)
112 KOG2315 Predicted translation 97.3 0.0086 1.9E-07 61.6 15.7 145 34-255 221-368 (566)
113 PTZ00420 coronin; Provisional 97.3 0.23 4.9E-06 53.9 27.1 113 32-220 76-200 (568)
114 KOG0263 Transcription initiati 97.3 0.0097 2.1E-07 63.5 15.9 211 10-327 433-646 (707)
115 KOG2139 WD40 repeat protein [G 97.2 0.036 7.8E-07 54.1 17.9 118 19-196 130-260 (445)
116 PLN00181 protein SPA1-RELATED; 97.2 0.16 3.6E-06 58.4 26.5 58 32-103 534-593 (793)
117 KOG0271 Notchless-like WD40 re 97.1 0.002 4.2E-08 63.0 8.6 107 21-192 360-469 (480)
118 KOG0772 Uncharacterized conser 97.1 0.077 1.7E-06 54.2 19.9 59 32-104 169-232 (641)
119 KOG1274 WD40 repeat protein [G 97.1 0.037 8E-07 60.3 18.8 58 33-104 99-156 (933)
120 KOG0273 Beta-transducin family 97.1 0.098 2.1E-06 52.9 20.4 130 160-333 260-392 (524)
121 PF08450 SGL: SMP-30/Gluconola 97.1 0.28 6E-06 47.5 24.0 142 157-333 22-165 (246)
122 COG0657 Aes Esterase/lipase [L 97.1 0.0021 4.5E-08 65.0 9.3 99 488-609 57-159 (312)
123 KOG0772 Uncharacterized conser 97.1 0.01 2.2E-07 60.3 13.6 78 6-103 255-334 (641)
124 KOG0284 Polyadenylation factor 97.1 0.0047 1E-07 60.9 10.9 222 32-372 98-326 (464)
125 KOG0282 mRNA splicing factor [ 97.1 0.012 2.5E-07 59.5 13.7 78 7-104 239-317 (503)
126 COG5354 Uncharacterized protei 97.1 0.12 2.6E-06 52.9 20.6 153 4-219 151-308 (561)
127 KOG1274 WD40 repeat protein [G 97.0 0.014 3E-07 63.5 14.3 64 31-104 139-206 (933)
128 PF06500 DUF1100: Alpha/beta h 97.0 0.0018 3.9E-08 65.9 7.3 101 481-608 164-267 (411)
129 KOG2110 Uncharacterized conser 97.0 0.014 3.1E-07 56.9 13.0 82 5-104 106-191 (391)
130 PF10503 Esterase_phd: Esteras 97.0 0.0017 3.7E-08 61.0 6.6 96 496-608 2-103 (220)
131 PLN02919 haloacid dehalogenase 96.9 1.5 3.2E-05 51.8 31.4 34 179-224 687-720 (1057)
132 PF07433 DUF1513: Protein of u 96.9 0.48 1E-05 46.5 22.3 225 33-333 7-248 (305)
133 KOG0286 G-protein beta subunit 96.9 0.46 9.9E-06 45.4 26.4 234 21-371 48-292 (343)
134 PF01738 DLH: Dienelactone hyd 96.8 0.0035 7.7E-08 59.6 7.5 93 495-608 1-104 (218)
135 KOG1009 Chromatin assembly com 96.8 0.19 4.1E-06 50.0 18.9 39 158-196 146-187 (434)
136 PRK10115 protease 2; Provision 96.8 0.47 1E-05 53.3 24.9 82 5-103 153-239 (686)
137 PF00135 COesterase: Carboxyle 96.8 0.0014 3E-08 71.8 4.8 104 490-608 106-214 (535)
138 COG1506 DAP2 Dipeptidyl aminop 96.8 1.2 2.7E-05 49.5 27.8 78 3-104 41-118 (620)
139 KOG0275 Conserved WD40 repeat- 96.7 0.068 1.5E-06 51.2 15.0 38 29-76 212-249 (508)
140 PF07433 DUF1513: Protein of u 96.7 0.29 6.3E-06 48.0 19.4 189 156-372 27-236 (305)
141 PF10647 Gmad1: Lipoprotein Lp 96.7 0.065 1.4E-06 52.1 15.3 71 19-103 10-82 (253)
142 PRK05371 x-prolyl-dipeptidyl a 96.7 0.016 3.5E-07 65.3 12.4 61 546-609 270-345 (767)
143 COG3386 Gluconolactonase [Carb 96.7 0.8 1.7E-05 45.6 24.4 36 33-77 27-62 (307)
144 KOG1515 Arylacetamide deacetyl 96.7 0.01 2.2E-07 59.5 9.6 104 482-609 63-173 (336)
145 KOG0305 Anaphase promoting com 96.6 0.9 1.9E-05 47.7 23.4 56 33-104 180-235 (484)
146 TIGR03100 hydr1_PEP hydrolase, 96.6 0.027 5.9E-07 55.6 12.1 101 483-607 3-105 (274)
147 PLN02919 haloacid dehalogenase 96.5 0.47 1E-05 55.9 23.5 35 178-224 743-777 (1057)
148 PLN02442 S-formylglutathione h 96.5 0.012 2.7E-07 58.3 9.2 68 481-563 17-86 (283)
149 TIGR02821 fghA_ester_D S-formy 96.4 0.029 6.2E-07 55.5 11.2 111 481-609 12-145 (275)
150 KOG0265 U5 snRNP-specific prot 96.4 0.98 2.1E-05 43.4 24.2 58 32-104 49-108 (338)
151 PLN00021 chlorophyllase 96.4 0.013 2.9E-07 58.7 8.4 86 493-608 37-132 (313)
152 KOG0296 Angio-associated migra 96.4 1.2 2.6E-05 43.9 25.5 112 32-219 108-222 (399)
153 PLN00181 protein SPA1-RELATED; 96.3 1.7 3.8E-05 50.0 26.4 49 158-219 556-608 (793)
154 KOG0973 Histone transcription 96.3 0.021 4.5E-07 63.3 9.7 59 32-104 131-189 (942)
155 COG4099 Predicted peptidase [G 96.2 0.035 7.6E-07 53.1 9.5 95 490-609 169-276 (387)
156 KOG0645 WD40 repeat protein [G 96.1 1.3 2.8E-05 42.0 20.5 60 32-104 16-79 (312)
157 KOG2048 WD40 repeat protein [G 96.1 0.26 5.6E-06 52.2 15.9 126 28-225 380-513 (691)
158 TIGR03101 hydr2_PEP hydrolase, 96.0 0.073 1.6E-06 51.9 11.4 102 484-608 2-105 (266)
159 KOG1273 WD40 repeat protein [G 96.0 0.6 1.3E-05 45.1 16.7 58 32-104 25-83 (405)
160 PF04762 IKI3: IKI3 family; I 96.0 4.5 9.9E-05 47.0 27.7 118 246-385 214-333 (928)
161 KOG0282 mRNA splicing factor [ 95.9 0.15 3.3E-06 51.7 13.0 115 32-220 216-333 (503)
162 PF12146 Hydrolase_4: Putative 95.8 0.024 5.2E-07 43.9 5.6 52 492-565 1-53 (79)
163 PLN02872 triacylglycerol lipas 95.8 0.096 2.1E-06 54.4 11.5 112 479-607 41-165 (395)
164 KOG2919 Guanine nucleotide-bin 95.7 1.2 2.6E-05 43.2 17.2 37 294-333 246-282 (406)
165 KOG4391 Predicted alpha/beta h 95.6 0.15 3.2E-06 46.6 10.3 108 473-608 45-155 (300)
166 KOG0643 Translation initiation 95.5 0.67 1.5E-05 43.7 14.6 67 27-103 90-164 (327)
167 COG5354 Uncharacterized protei 95.5 0.52 1.1E-05 48.4 14.9 126 33-220 225-351 (561)
168 KOG0283 WD40 repeat-containing 95.5 1.3 2.8E-05 48.3 18.6 64 168-257 403-467 (712)
169 PF07676 PD40: WD40-like Beta 95.4 0.04 8.8E-07 35.9 4.9 36 293-328 3-39 (39)
170 KOG0265 U5 snRNP-specific prot 95.3 2.9 6.2E-05 40.3 19.3 135 157-333 155-297 (338)
171 KOG0771 Prolactin regulatory e 95.3 0.24 5.2E-06 49.5 11.6 55 30-98 186-241 (398)
172 KOG0319 WD40-repeat-containing 95.2 5.6 0.00012 43.1 23.8 57 35-104 24-80 (775)
173 PLN02385 hydrolase; alpha/beta 95.2 0.2 4.2E-06 51.5 11.7 99 483-606 62-166 (349)
174 PRK10985 putative hydrolase; P 95.2 0.11 2.4E-06 52.7 9.7 48 547-596 79-127 (324)
175 KOG1445 Tumor-specific antigen 95.1 0.16 3.5E-06 53.2 10.2 113 27-194 624-740 (1012)
176 KOG0263 Transcription initiati 95.1 0.14 3E-06 55.1 10.0 109 33-217 538-649 (707)
177 PF06433 Me-amine-dh_H: Methyl 95.0 3.1 6.6E-05 41.6 18.5 134 178-334 187-322 (342)
178 KOG0640 mRNA cleavage stimulat 94.9 1.4 3E-05 42.6 15.0 120 171-330 213-335 (430)
179 KOG2394 WD40 protein DMR-N9 [G 94.8 0.022 4.8E-07 58.3 3.3 58 32-103 292-349 (636)
180 KOG0296 Angio-associated migra 94.8 2.5 5.4E-05 41.8 16.8 116 32-224 66-186 (399)
181 COG2945 Predicted hydrolase of 94.8 0.1 2.2E-06 46.9 6.8 45 548-596 53-98 (210)
182 KOG1524 WD40 repeat-containing 94.8 0.33 7.1E-06 50.1 11.1 57 32-104 106-163 (737)
183 PF07859 Abhydrolase_3: alpha/ 94.7 0.065 1.4E-06 50.5 6.1 53 548-609 21-78 (211)
184 PF04762 IKI3: IKI3 family; I 94.5 1.9 4.1E-05 50.1 18.0 80 157-255 237-318 (928)
185 KOG0278 Serine/threonine kinas 94.5 1.6 3.5E-05 40.9 13.9 128 161-333 169-300 (334)
186 COG3490 Uncharacterized protei 94.5 4.9 0.00011 38.7 18.1 84 157-260 91-179 (366)
187 PHA02857 monoglyceride lipase; 94.4 0.32 7E-06 47.9 10.5 84 487-596 5-93 (276)
188 KOG0645 WD40 repeat protein [G 94.3 2.8 6.1E-05 39.8 15.2 154 177-382 17-177 (312)
189 KOG2096 WD40 repeat protein [G 94.2 5.9 0.00013 38.6 20.0 19 176-194 134-152 (420)
190 KOG4378 Nuclear protein COP1 [ 94.1 0.91 2E-05 46.5 12.6 137 6-219 144-282 (673)
191 TIGR02171 Fb_sc_TIGR02171 Fibr 94.0 0.41 8.9E-06 53.4 10.9 87 277-373 330-419 (912)
192 KOG4378 Nuclear protein COP1 [ 94.0 3.8 8.3E-05 42.2 16.6 134 158-334 144-282 (673)
193 KOG1538 Uncharacterized conser 94.0 2.1 4.6E-05 45.6 15.2 56 32-103 14-70 (1081)
194 PLN02652 hydrolase; alpha/beta 94.0 0.43 9.3E-06 49.7 10.6 91 482-596 110-204 (395)
195 KOG0288 WD40 repeat protein Ti 93.8 0.6 1.3E-05 46.7 10.4 108 27-193 338-450 (459)
196 COG4188 Predicted dienelactone 93.7 0.39 8.4E-06 48.1 9.1 100 492-608 49-165 (365)
197 KOG1445 Tumor-specific antigen 93.6 1.7 3.6E-05 46.0 13.7 59 176-260 679-738 (1012)
198 KOG2624 Triglyceride lipase-ch 93.6 0.37 7.9E-06 49.7 9.0 98 480-596 46-157 (403)
199 KOG1539 WD repeat protein [Gen 93.4 0.4 8.6E-06 52.2 9.1 82 60-195 554-638 (910)
200 KOG0771 Prolactin regulatory e 93.3 1.9 4.1E-05 43.3 13.0 58 33-104 147-204 (398)
201 PF06977 SdiA-regulated: SdiA- 93.3 6.3 0.00014 37.9 16.5 57 32-101 23-79 (248)
202 COG4757 Predicted alpha/beta h 93.3 0.19 4.1E-06 46.5 5.7 89 485-595 8-100 (281)
203 PRK02888 nitrous-oxide reducta 93.0 9 0.0002 41.6 18.5 146 35-218 197-352 (635)
204 KOG2110 Uncharacterized conser 92.9 0.49 1.1E-05 46.7 8.3 74 21-105 163-237 (391)
205 KOG0288 WD40 repeat protein Ti 92.7 1.3 2.8E-05 44.4 10.9 77 155-255 361-445 (459)
206 KOG0639 Transducin-like enhanc 92.5 2.9 6.3E-05 43.1 13.3 56 32-102 511-567 (705)
207 KOG2394 WD40 protein DMR-N9 [G 92.5 0.9 2E-05 47.1 9.8 60 300-371 292-351 (636)
208 COG3386 Gluconolactonase [Carb 92.5 13 0.00027 37.3 28.0 49 277-332 144-193 (307)
209 KOG1516 Carboxylesterase and r 92.4 0.27 5.9E-06 53.9 6.7 101 489-607 93-200 (545)
210 PRK10749 lysophospholipase L2; 92.3 0.68 1.5E-05 47.1 9.0 102 481-608 29-137 (330)
211 PF10647 Gmad1: Lipoprotein Lp 92.3 0.59 1.3E-05 45.4 8.1 66 32-104 113-183 (253)
212 KOG0284 Polyadenylation factor 91.9 1.3 2.9E-05 44.3 9.9 234 176-500 98-337 (464)
213 KOG1520 Predicted alkaloid syn 91.8 3 6.4E-05 42.0 12.3 120 33-195 117-239 (376)
214 PF12740 Chlorophyllase2: Chlo 91.7 0.48 1E-05 45.5 6.6 82 498-608 7-97 (259)
215 COG3204 Uncharacterized protei 91.7 4.4 9.6E-05 39.3 12.8 69 20-103 77-145 (316)
216 PRK02888 nitrous-oxide reducta 91.3 16 0.00035 39.8 17.9 121 185-333 140-269 (635)
217 COG1647 Esterase/lipase [Gener 91.0 0.33 7.2E-06 44.7 4.5 54 547-608 34-91 (243)
218 KOG0639 Transducin-like enhanc 90.7 6.1 0.00013 40.8 13.4 184 29-316 464-651 (705)
219 KOG1063 RNA polymerase II elon 90.0 1.6 3.5E-05 46.7 8.9 64 32-105 527-591 (764)
220 KOG0275 Conserved WD40 repeat- 89.8 5.2 0.00011 38.8 11.4 137 32-194 308-457 (508)
221 KOG0299 U3 snoRNP-associated p 89.7 27 0.00058 36.0 17.7 51 32-96 204-254 (479)
222 KOG1523 Actin-related protein 89.5 19 0.00042 35.2 15.0 60 33-104 13-73 (361)
223 KOG0268 Sof1-like rRNA process 89.4 2.4 5.1E-05 41.9 9.0 134 156-333 209-348 (433)
224 KOG0310 Conserved WD40 repeat- 89.3 28 0.00061 36.0 16.7 35 173-219 152-186 (487)
225 COG1770 PtrB Protease II [Amin 89.3 37 0.0008 37.0 18.5 167 300-503 130-301 (682)
226 KOG0283 WD40 repeat-containing 89.2 21 0.00044 39.4 16.7 53 32-100 371-423 (712)
227 KOG1552 Predicted alpha/beta h 89.2 3.6 7.8E-05 39.2 9.9 96 481-608 34-136 (258)
228 KOG1539 WD repeat protein [Gen 89.1 0.9 2E-05 49.5 6.5 58 32-104 578-635 (910)
229 KOG0306 WD40-repeat-containing 89.0 16 0.00035 40.0 15.4 110 177-329 553-663 (888)
230 PLN02511 hydrolase 88.3 2.9 6.2E-05 43.6 9.7 96 481-596 70-169 (388)
231 KOG2048 WD40 repeat protein [G 88.0 20 0.00043 38.7 15.2 143 4-219 402-550 (691)
232 KOG0307 Vesicle coat complex C 88.0 4 8.6E-05 46.4 10.7 142 156-334 138-286 (1049)
233 KOG0278 Serine/threonine kinas 87.7 14 0.0003 34.9 12.3 68 19-103 134-201 (334)
234 PRK10439 enterobactin/ferric e 87.7 5.2 0.00011 41.9 11.1 109 481-609 179-295 (411)
235 PF12695 Abhydrolase_5: Alpha/ 86.6 1.3 2.8E-05 38.3 5.2 50 546-608 17-67 (145)
236 KOG0306 WD40-repeat-containing 86.2 59 0.0013 35.9 19.5 22 175-196 509-530 (888)
237 PF03088 Str_synth: Strictosid 86.0 2.4 5.1E-05 33.5 5.7 41 155-195 35-77 (89)
238 KOG0319 WD40-repeat-containing 86.0 13 0.00029 40.4 12.7 115 176-333 64-180 (775)
239 KOG1455 Lysophospholipase [Lip 85.9 3.5 7.6E-05 40.2 7.9 94 482-596 27-123 (313)
240 KOG2106 Uncharacterized conser 85.7 3.4 7.3E-05 42.7 7.9 60 30-103 447-508 (626)
241 COG3490 Uncharacterized protei 85.6 16 0.00035 35.3 11.8 73 18-104 57-131 (366)
242 KOG3101 Esterase D [General fu 85.5 3.2 7E-05 38.0 6.9 100 494-608 27-147 (283)
243 KOG0264 Nucleosome remodeling 85.2 22 0.00047 36.4 13.2 113 32-217 229-347 (422)
244 KOG0295 WD40 repeat-containing 85.1 9.1 0.0002 38.0 10.2 128 32-220 237-367 (406)
245 COG3391 Uncharacterized conser 85.1 51 0.0011 34.2 18.8 122 32-223 117-245 (381)
246 PF02273 Acyl_transf_2: Acyl t 84.9 7.1 0.00015 36.9 9.0 96 489-608 9-107 (294)
247 COG0429 Predicted hydrolase of 84.6 3.6 7.8E-05 40.7 7.3 50 546-597 95-145 (345)
248 KOG4389 Acetylcholinesterase/B 84.3 2.8 6.2E-05 43.4 6.7 95 491-608 119-224 (601)
249 KOG0295 WD40 repeat-containing 84.1 12 0.00027 37.2 10.6 36 294-333 330-365 (406)
250 KOG2106 Uncharacterized conser 84.0 11 0.00024 39.2 10.6 56 33-104 410-465 (626)
251 KOG0289 mRNA splicing factor [ 83.8 37 0.0008 34.8 14.0 59 32-104 349-407 (506)
252 PF11768 DUF3312: Protein of u 83.3 29 0.00063 37.0 13.7 143 6-217 185-329 (545)
253 PF05694 SBP56: 56kDa selenium 82.8 12 0.00025 38.8 10.4 69 300-372 313-393 (461)
254 KOG1007 WD repeat protein TSSC 82.7 11 0.00025 36.2 9.5 62 32-104 125-190 (370)
255 COG2267 PldB Lysophospholipase 82.1 4.1 9E-05 40.6 7.0 63 481-565 8-71 (298)
256 KOG1273 WD40 repeat protein [G 81.6 56 0.0012 32.1 20.4 67 433-503 256-326 (405)
257 PF03583 LIP: Secretory lipase 81.4 3.8 8.2E-05 40.7 6.5 59 546-608 17-77 (290)
258 KOG0643 Translation initiation 81.1 53 0.0012 31.5 20.9 52 158-217 75-128 (327)
259 PRK00870 haloalkane dehalogena 80.9 7.9 0.00017 38.6 8.8 21 548-572 66-87 (302)
260 KOG2919 Guanine nucleotide-bin 80.4 15 0.00033 36.0 9.6 60 33-103 161-225 (406)
261 KOG0268 Sof1-like rRNA process 80.1 3.6 7.8E-05 40.7 5.4 78 6-103 211-289 (433)
262 PRK13614 lipoprotein LpqB; Pro 80.0 22 0.00048 38.8 12.0 66 32-104 435-503 (573)
263 KOG1920 IkappaB kinase complex 80.0 1.2E+02 0.0027 35.5 17.9 39 62-105 90-128 (1265)
264 KOG0264 Nucleosome remodeling 79.7 78 0.0017 32.5 21.0 155 176-374 229-395 (422)
265 PRK13615 lipoprotein LpqB; Pro 79.5 66 0.0014 35.1 15.3 48 34-98 337-384 (557)
266 TIGR01836 PHA_synth_III_C poly 79.3 12 0.00027 38.2 9.7 47 546-596 85-132 (350)
267 PF05677 DUF818: Chlamydia CHL 79.3 22 0.00047 35.6 10.6 103 481-608 111-221 (365)
268 TIGR01607 PST-A Plasmodium sub 79.2 4.7 0.0001 41.0 6.4 46 547-595 66-117 (332)
269 KOG0269 WD40 repeat-containing 78.9 55 0.0012 36.1 14.1 114 175-333 177-297 (839)
270 PF15492 Nbas_N: Neuroblastoma 78.7 14 0.00031 35.6 8.8 54 36-104 3-61 (282)
271 KOG4178 Soluble epoxide hydrol 78.4 7.2 0.00016 38.6 7.0 62 514-594 45-111 (322)
272 KOG0307 Vesicle coat complex C 77.7 15 0.00032 42.1 9.9 116 158-311 185-309 (1049)
273 KOG0650 WD40 repeat nucleolar 77.7 18 0.00038 38.6 9.8 104 32-196 523-629 (733)
274 PRK13614 lipoprotein LpqB; Pro 77.1 1.2E+02 0.0026 33.3 19.6 51 32-98 344-394 (573)
275 KOG1007 WD repeat protein TSSC 77.0 65 0.0014 31.3 12.5 70 32-104 65-141 (370)
276 PF00756 Esterase: Putative es 76.2 3.8 8.1E-05 39.6 4.6 26 492-519 5-30 (251)
277 KOG0289 mRNA splicing factor [ 74.5 1.1E+02 0.0024 31.6 18.4 53 176-253 349-401 (506)
278 KOG0647 mRNA export protein (c 73.5 14 0.0003 35.9 7.2 60 300-371 29-91 (347)
279 KOG0277 Peroxisomal targeting 73.4 87 0.0019 29.9 14.5 83 6-103 39-121 (311)
280 TIGR02604 Piru_Ver_Nterm putat 71.6 81 0.0018 32.5 13.4 37 156-193 163-201 (367)
281 KOG0316 Conserved WD40 repeat- 71.3 52 0.0011 31.0 10.1 56 32-101 61-116 (307)
282 PRK05855 short chain dehydroge 71.2 10 0.00022 41.8 7.1 78 488-593 8-90 (582)
283 KOG1524 WD40 repeat-containing 71.1 23 0.0005 37.2 8.7 56 32-103 147-203 (737)
284 KOG0303 Actin-binding protein 70.8 1.3E+02 0.0028 30.7 17.3 54 176-255 133-187 (472)
285 KOG2111 Uncharacterized conser 70.5 1.2E+02 0.0025 30.1 13.0 20 176-195 228-247 (346)
286 PF05787 DUF839: Bacterial pro 70.5 94 0.002 33.8 13.8 35 159-193 482-520 (524)
287 PRK13613 lipoprotein LpqB; Pro 70.0 70 0.0015 35.3 12.8 64 32-103 456-523 (599)
288 KOG0302 Ribosome Assembly prot 69.9 70 0.0015 32.3 11.3 84 5-103 234-319 (440)
289 KOG0640 mRNA cleavage stimulat 68.4 1.3E+02 0.0027 29.7 16.0 58 32-100 218-275 (430)
290 KOG0647 mRNA export protein (c 68.2 1.2E+02 0.0026 29.8 12.2 70 20-103 18-89 (347)
291 KOG0650 WD40 repeat nucleolar 67.5 1.9E+02 0.004 31.3 15.6 54 32-100 402-455 (733)
292 PF12566 DUF3748: Protein of u 67.4 4.5 9.8E-05 32.9 2.3 15 36-50 73-87 (122)
293 COG3391 Uncharacterized conser 66.5 1.7E+02 0.0036 30.4 22.5 205 33-333 76-284 (381)
294 KOG0316 Conserved WD40 repeat- 66.2 1.2E+02 0.0026 28.7 16.3 51 157-220 81-134 (307)
295 TIGR01838 PHA_synth_I poly(R)- 65.6 32 0.00068 37.4 9.0 57 546-608 211-268 (532)
296 KOG1063 RNA polymerase II elon 65.4 14 0.00031 39.9 6.0 63 32-104 574-636 (764)
297 PF09752 DUF2048: Uncharacteri 64.7 34 0.00074 34.5 8.3 88 498-609 80-182 (348)
298 KOG2111 Uncharacterized conser 63.8 25 0.00054 34.5 6.8 64 32-106 183-246 (346)
299 PRK13615 lipoprotein LpqB; Pro 63.6 89 0.0019 34.1 11.8 65 32-103 418-486 (557)
300 PF03403 PAF-AH_p_II: Platelet 62.9 5.8 0.00013 41.0 2.8 21 546-566 118-139 (379)
301 KOG3043 Predicted hydrolase re 62.3 8.6 0.00019 35.9 3.4 58 547-608 59-126 (242)
302 TIGR01249 pro_imino_pep_1 prol 62.1 49 0.0011 33.0 9.3 43 550-596 48-91 (306)
303 KOG1838 Alpha/beta hydrolase [ 62.1 50 0.0011 34.1 9.1 100 481-599 94-198 (409)
304 KOG1520 Predicted alkaloid syn 61.5 1.1E+02 0.0023 31.2 11.1 138 302-466 118-258 (376)
305 PF07224 Chlorophyllase: Chlor 61.1 20 0.00044 34.4 5.6 73 494-595 32-105 (307)
306 KOG0294 WD40 repeat-containing 60.7 1.1E+02 0.0024 30.1 10.6 36 158-193 150-187 (362)
307 PF15525 DUF4652: Domain of un 60.4 1E+02 0.0022 28.0 9.5 68 4-80 87-158 (200)
308 TIGR03695 menH_SHCHC 2-succiny 60.4 21 0.00046 33.4 6.2 52 548-606 21-74 (251)
309 KOG1963 WD40 repeat protein [G 60.4 57 0.0012 36.4 9.6 56 245-316 255-312 (792)
310 PF15492 Nbas_N: Neuroblastoma 60.3 30 0.00065 33.4 6.7 36 32-77 45-80 (282)
311 KOG0313 Microtubule binding pr 59.1 2.1E+02 0.0045 29.1 20.1 91 275-382 280-373 (423)
312 PF03088 Str_synth: Strictosid 59.0 57 0.0012 25.7 7.1 39 397-447 39-77 (89)
313 KOG1408 WD40 repeat protein [F 58.8 1E+02 0.0022 33.9 10.8 38 157-194 663-703 (1080)
314 PRK13613 lipoprotein LpqB; Pro 58.2 1.4E+02 0.003 33.1 12.3 52 32-98 364-420 (599)
315 PF12697 Abhydrolase_6: Alpha/ 56.6 17 0.00036 33.5 4.6 45 547-596 17-62 (228)
316 PF12894 Apc4_WD40: Anaphase-p 55.7 39 0.00084 23.0 4.9 29 32-70 13-41 (47)
317 TIGR01250 pro_imino_pep_2 prol 55.6 53 0.0011 31.6 8.2 18 548-566 46-64 (288)
318 TIGR02427 protocat_pcaD 3-oxoa 55.4 42 0.0009 31.4 7.3 17 548-566 33-50 (251)
319 KOG1036 Mitotic spindle checkp 55.3 1.6E+02 0.0034 29.0 10.5 63 21-99 5-67 (323)
320 KOG1009 Chromatin assembly com 54.3 12 0.00027 37.7 3.2 59 32-104 125-183 (434)
321 KOG0310 Conserved WD40 repeat- 53.3 2.9E+02 0.0063 29.0 15.5 58 32-104 112-171 (487)
322 TIGR03611 RutD pyrimidine util 52.7 77 0.0017 29.9 8.7 15 551-566 35-50 (257)
323 PRK11460 putative hydrolase; P 52.5 40 0.00087 32.1 6.5 62 546-608 34-109 (232)
324 cd00707 Pancreat_lipase_like P 52.4 35 0.00076 33.5 6.2 55 550-608 61-118 (275)
325 PF10340 DUF2424: Protein of u 52.1 43 0.00092 34.3 6.7 75 498-598 109-194 (374)
326 PF07082 DUF1350: Protein of u 51.9 54 0.0012 31.4 6.9 48 546-600 38-86 (250)
327 KOG1214 Nidogen and related ba 51.6 4.1E+02 0.0089 30.2 15.0 27 36-73 984-1010(1289)
328 KOG1230 Protein containing rep 51.3 2.9E+02 0.0062 28.6 12.0 64 156-225 153-223 (521)
329 KOG4283 Transcription-coupled 50.1 2.6E+02 0.0056 27.5 12.1 58 157-226 168-230 (397)
330 TIGR03343 biphenyl_bphD 2-hydr 49.4 36 0.00078 33.1 5.9 20 549-572 54-74 (282)
331 PF15525 DUF4652: Domain of un 48.8 2.1E+02 0.0046 26.1 11.6 63 39-104 66-129 (200)
332 KOG4547 WD40 repeat-containing 48.8 2.2E+02 0.0047 30.6 11.2 31 176-221 146-176 (541)
333 TIGR03502 lipase_Pla1_cef extr 47.7 72 0.0016 36.3 8.2 19 546-565 467-486 (792)
334 KOG0269 WD40 repeat-containing 47.6 1E+02 0.0022 34.3 8.8 68 19-99 121-189 (839)
335 PF05787 DUF839: Bacterial pro 47.1 34 0.00073 37.1 5.5 38 64-104 482-519 (524)
336 PF06342 DUF1057: Alpha/beta h 46.6 1.7E+02 0.0036 28.8 9.3 94 483-600 7-103 (297)
337 KOG0313 Microtubule binding pr 45.2 2.5E+02 0.0054 28.5 10.4 68 19-103 248-317 (423)
338 KOG1920 IkappaB kinase complex 45.2 5.9E+02 0.013 30.4 14.6 61 34-104 199-259 (1265)
339 PLN02965 Probable pheophorbida 43.1 53 0.0012 31.6 5.9 17 548-565 23-40 (255)
340 TIGR02276 beta_rpt_yvtn 40-res 41.9 72 0.0015 20.3 4.6 26 40-74 1-26 (42)
341 PF09910 DUF2139: Uncharacteri 41.8 1.2E+02 0.0025 29.9 7.5 74 322-414 76-150 (339)
342 TIGR03056 bchO_mg_che_rel puta 41.5 74 0.0016 30.7 6.7 20 548-572 48-68 (278)
343 KOG0270 WD40 repeat-containing 41.2 3.5E+02 0.0076 28.1 11.0 57 34-103 247-303 (463)
344 PHA01753 Holliday junction res 41.1 25 0.00053 29.5 2.5 19 547-566 14-33 (121)
345 KOG3914 WD repeat protein WDR4 40.9 4.1E+02 0.009 27.2 12.6 38 168-219 188-225 (390)
346 PLN02211 methyl indole-3-aceta 40.9 74 0.0016 31.1 6.5 18 547-565 37-55 (273)
347 KOG0302 Ribosome Assembly prot 39.8 4.3E+02 0.0093 27.0 11.5 141 156-333 233-381 (440)
348 KOG1963 WD40 repeat protein [G 39.7 2.3E+02 0.005 31.9 10.2 56 33-103 208-268 (792)
349 KOG1538 Uncharacterized conser 39.6 51 0.0011 35.7 5.1 53 301-368 15-69 (1081)
350 PF00400 WD40: WD domain, G-be 39.6 48 0.001 20.6 3.4 18 32-49 13-30 (39)
351 KOG1408 WD40 repeat protein [F 39.5 95 0.0021 34.2 7.1 56 33-103 40-95 (1080)
352 KOG1214 Nidogen and related ba 38.7 6.5E+02 0.014 28.7 13.8 170 155-372 997-1175(1289)
353 TIGR02604 Piru_Ver_Nterm putat 38.4 1.9E+02 0.004 29.8 9.2 62 33-100 126-197 (367)
354 KOG3914 WD repeat protein WDR4 37.8 2.1E+02 0.0046 29.1 8.8 27 166-192 142-169 (390)
355 PF05096 Glu_cyclase_2: Glutam 37.6 3.5E+02 0.0077 26.3 10.1 152 17-193 76-249 (264)
356 KOG0646 WD40 repeat protein [G 37.1 5.1E+02 0.011 27.1 15.9 58 33-104 84-141 (476)
357 KOG4627 Kynurenine formamidase 36.9 1.6E+02 0.0034 27.5 7.0 42 548-596 90-131 (270)
358 PF15390 DUF4613: Domain of un 36.6 5.3E+02 0.011 28.2 11.8 91 4-105 35-131 (671)
359 KOG4283 Transcription-coupled 36.5 57 0.0012 31.7 4.5 66 32-104 190-264 (397)
360 KOG1523 Actin-related protein 35.7 4.6E+02 0.01 26.2 12.9 60 32-103 57-117 (361)
361 PF13449 Phytase-like: Esteras 35.4 4.8E+02 0.01 26.3 11.6 43 62-104 112-164 (326)
362 KOG2100 Dipeptidyl aminopeptid 34.8 7.1E+02 0.015 28.6 13.7 21 176-196 149-169 (755)
363 KOG3847 Phospholipase A2 (plat 34.6 32 0.00069 33.9 2.5 15 549-563 139-154 (399)
364 COG4257 Vgb Streptogramin lyas 33.2 4.8E+02 0.01 25.6 14.3 74 17-104 91-164 (353)
365 PF10313 DUF2415: Uncharacteri 33.0 1.3E+02 0.0028 20.1 4.4 35 33-77 3-41 (43)
366 PF06977 SdiA-regulated: SdiA- 32.7 4.6E+02 0.01 25.3 20.6 37 176-224 23-59 (248)
367 PRK10673 acyl-CoA esterase; Pr 32.4 89 0.0019 29.7 5.5 37 553-593 40-78 (255)
368 PRK14676 hypothetical protein; 32.0 33 0.00072 28.7 2.0 16 548-563 18-34 (117)
369 PF12566 DUF3748: Protein of u 31.6 40 0.00087 27.6 2.3 17 179-195 72-88 (122)
370 PF02021 UPF0102: Uncharacteri 31.2 19 0.00041 28.7 0.4 21 548-571 7-28 (93)
371 PF10584 Proteasome_A_N: Prote 30.8 18 0.00039 20.4 0.1 10 35-44 5-14 (23)
372 PRK14679 hypothetical protein; 30.7 36 0.00078 29.0 2.0 16 548-563 26-42 (128)
373 KOG4640 Anaphase-promoting com 30.0 1.4E+02 0.0031 32.4 6.6 50 7-73 44-95 (665)
374 PF08538 DUF1749: Protein of u 30.0 1.1E+02 0.0025 30.3 5.6 55 548-607 56-113 (303)
375 KOG2281 Dipeptidyl aminopeptid 29.9 2.5E+02 0.0053 31.0 8.2 29 144-172 208-237 (867)
376 PRK14689 hypothetical protein; 29.5 42 0.0009 28.4 2.2 17 547-563 18-35 (124)
377 KOG2041 WD40 repeat protein [G 29.4 8.5E+02 0.018 27.3 12.5 57 33-104 118-174 (1189)
378 KOG2321 WD40 repeat protein [G 29.1 7.8E+02 0.017 26.8 14.9 37 176-225 230-266 (703)
379 KOG0294 WD40 repeat-containing 28.8 2.3E+02 0.0049 28.1 7.1 58 32-104 129-186 (362)
380 KOG4547 WD40 repeat-containing 28.7 3.2E+02 0.0069 29.4 8.8 50 32-97 146-195 (541)
381 KOG0303 Actin-binding protein 28.5 6.7E+02 0.015 25.8 15.1 53 155-220 152-206 (472)
382 KOG1332 Vesicle coat complex C 28.5 5.4E+02 0.012 24.7 18.6 69 294-371 203-275 (299)
383 PLN03087 BODYGUARD 1 domain co 28.2 98 0.0021 33.2 5.3 30 485-519 178-207 (481)
384 KOG3621 WD40 repeat-containing 28.1 1.6E+02 0.0035 32.4 6.7 93 37-191 40-141 (726)
385 PTZ00472 serine carboxypeptida 28.1 4.3E+02 0.0093 28.2 10.1 114 483-608 50-177 (462)
386 TIGR00252 conserved hypothetic 28.0 42 0.00091 28.2 2.0 16 548-563 17-33 (119)
387 KOG2377 Uncharacterized conser 27.9 2.4E+02 0.0052 29.5 7.5 63 32-105 68-130 (657)
388 COG3204 Uncharacterized protei 27.6 6.1E+02 0.013 25.1 19.0 37 176-224 87-123 (316)
389 TIGR01392 homoserO_Ac_trn homo 27.5 1.8E+02 0.004 29.5 7.1 15 550-565 67-82 (351)
390 KOG0290 Conserved WD40 repeat- 27.3 6.1E+02 0.013 25.0 19.9 42 169-222 190-232 (364)
391 PRK14678 hypothetical protein; 27.0 44 0.00095 28.1 1.9 16 548-563 17-33 (120)
392 TIGR01839 PHA_synth_II poly(R) 26.4 4.1E+02 0.0089 29.0 9.4 45 546-596 238-284 (560)
393 PRK14673 hypothetical protein; 26.2 48 0.001 28.6 2.0 16 548-563 37-53 (137)
394 PRK12497 hypothetical protein; 26.1 46 0.00099 27.9 1.9 16 548-563 17-33 (119)
395 PRK14686 hypothetical protein; 26.0 48 0.001 27.8 2.0 16 548-563 16-32 (119)
396 PRK14680 hypothetical protein; 25.4 52 0.0011 28.3 2.1 16 548-563 17-33 (134)
397 PRK14674 hypothetical protein; 25.3 51 0.0011 28.3 2.0 16 548-563 16-32 (133)
398 PF04841 Vps16_N: Vps16, N-ter 25.1 2.4E+02 0.0051 29.6 7.4 59 32-103 218-276 (410)
399 smart00135 LY Low-density lipo 25.0 1.8E+02 0.004 18.2 4.5 31 33-72 11-41 (43)
400 PRK14677 hypothetical protein; 24.6 49 0.0011 27.1 1.7 16 548-563 11-27 (107)
401 PLN02894 hydrolase, alpha/beta 24.6 5.3E+02 0.012 26.9 10.0 17 548-566 125-142 (402)
402 PRK14688 hypothetical protein; 24.6 52 0.0011 27.7 1.9 16 548-563 17-33 (121)
403 KOG4499 Ca2+-binding protein R 24.5 6.3E+02 0.014 24.2 12.6 60 276-342 139-201 (310)
404 TIGR03032 conserved hypothetic 24.3 7.4E+02 0.016 24.9 10.8 54 33-104 205-258 (335)
405 PF13360 PQQ_2: PQQ-like domai 24.1 5.8E+02 0.013 23.6 14.6 34 33-76 25-60 (238)
406 KOG1230 Protein containing rep 23.9 3.6E+02 0.0078 28.0 7.8 91 4-103 153-248 (521)
407 KOG1047 Bifunctional leukotrie 23.5 51 0.0011 35.2 2.0 107 498-607 257-379 (613)
408 PRK14684 hypothetical protein; 23.2 57 0.0012 27.4 1.9 16 548-563 17-33 (120)
409 KOG1034 Transcriptional repres 23.0 3.2E+02 0.007 27.3 7.1 62 32-103 137-198 (385)
410 PF04053 Coatomer_WDAD: Coatom 22.8 1.7E+02 0.0036 31.1 5.7 18 33-50 147-164 (443)
411 PLN02679 hydrolase, alpha/beta 22.8 1.2E+02 0.0026 31.1 4.7 20 548-572 108-128 (360)
412 PF13449 Phytase-like: Esteras 22.4 8E+02 0.017 24.6 16.0 35 299-333 215-252 (326)
413 PRK14682 hypothetical protein; 22.3 53 0.0011 27.5 1.5 16 548-563 15-31 (117)
414 PRK08775 homoserine O-acetyltr 22.2 3.3E+02 0.0071 27.5 7.8 14 551-565 95-109 (343)
415 PRK03204 haloalkane dehalogena 21.8 1.5E+02 0.0032 29.1 5.0 40 552-596 57-97 (286)
416 PRK14685 hypothetical protein; 21.7 66 0.0014 28.9 2.1 16 548-563 53-69 (177)
417 KOG4667 Predicted esterase [Li 21.4 4.3E+02 0.0093 25.0 7.1 46 548-595 55-101 (269)
418 KOG4328 WD40 protein [Function 21.4 9.7E+02 0.021 25.2 13.3 30 176-217 188-218 (498)
419 COG4831 Roadblock/LC7 domain [ 21.4 63 0.0014 25.4 1.6 20 33-52 15-34 (109)
420 KOG0277 Peroxisomal targeting 21.3 7.5E+02 0.016 23.9 13.8 42 155-196 36-82 (311)
421 KOG4532 WD40-like repeat conta 20.8 7.9E+02 0.017 24.0 13.5 35 297-334 249-284 (344)
422 PRK00175 metX homoserine O-ace 20.1 3.3E+02 0.0072 28.0 7.3 14 551-565 87-101 (379)
423 PF05694 SBP56: 56kDa selenium 20.0 3.9E+02 0.0084 28.1 7.3 63 33-104 314-391 (461)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.9e-30 Score=278.33 Aligned_cols=157 Identities=20% Similarity=0.267 Sum_probs=133.5
Q ss_pred ccccCCEEEEEeecCCCCceEEEEeCCCCceeeeeeCCCCCCcccCC-ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCC
Q 007140 434 INLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (616)
Q Consensus 434 ~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~-~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p 512 (616)
|+.+++.+++.++++..|+++|+++. ++..+++..+........+ .+|.+++++.||.+|+|||++|.++++.|||
T Consensus 318 f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~y- 394 (620)
T COG1506 318 FDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKY- 394 (620)
T ss_pred EeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCC-
Confidence 45578999999999999999999986 5566776655554444455 9999999999999999999999999999887
Q ss_pred CcEEEecccCcccccccCCcccCCCCccCCCC-CchHHHHhhCCeEEEE-CCCCCccccCCCccC---ChhHHHHHHHHH
Q 007140 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAE 587 (616)
Q Consensus 513 ~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~ 587 (616)
|+||++|+| |....++. .+++|+||++||+|++ ||| ||+|||++|.. ++||+.+++|++
T Consensus 395 -P~i~~~hGG--------------P~~~~~~~~~~~~q~~~~~G~~V~~~n~R-GS~GyG~~F~~~~~~~~g~~~~~D~~ 458 (620)
T COG1506 395 -PLIVYIHGG--------------PSAQVGYSFNPEIQVLASAGYAVLAPNYR-GSTGYGREFADAIRGDWGGVDLEDLI 458 (620)
T ss_pred -CEEEEeCCC--------------CccccccccchhhHHHhcCCeEEEEeCCC-CCCccHHHHHHhhhhccCCccHHHHH
Confidence 899999543 32111111 2789999999999999 999 99999999997 899999999999
Q ss_pred HHHHHHHHcCCccCCceEEEee
Q 007140 588 AAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 588 ~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
+++++|.++|+||++||||++.
T Consensus 459 ~~~~~l~~~~~~d~~ri~i~G~ 480 (620)
T COG1506 459 AAVDALVKLPLVDPERIGITGG 480 (620)
T ss_pred HHHHHHHhCCCcChHHeEEecc
Confidence 9999999999999999999985
No 2
>PRK10115 protease 2; Provisional
Probab=99.97 E-value=3.6e-27 Score=258.65 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=126.1
Q ss_pred ccCCEEEEEeecCCCCceEEEEeCCCCceeeeeeCCCCCCcccCCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007140 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (616)
Q Consensus 436 ~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~ 515 (616)
++++.+++..++...|+++|.+++.+++.+.|+..+.+..+.....+|.+++++.||.+|+++|++|++....++ .|+
T Consensus 370 ~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~--~P~ 447 (686)
T PRK10115 370 PETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKGH--NPL 447 (686)
T ss_pred CCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCCC--CCE
Confidence 456789999999999999999999988888888764333333345999999999999999997777655433233 399
Q ss_pred EEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCccC---ChhHHHHHHHHHHHHH
Q 007140 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVE 591 (616)
Q Consensus 516 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~~~v~ 591 (616)
||++|+++. ......| . ...|+|+++||+|++ |+| ||+|||++|.+ ..++..+++|+++|++
T Consensus 448 ll~~hGg~~---------~~~~p~f---~-~~~~~l~~rG~~v~~~n~R-Gs~g~G~~w~~~g~~~~k~~~~~D~~a~~~ 513 (686)
T PRK10115 448 LVYGYGSYG---------ASIDADF---S-FSRLSLLDRGFVYAIVHVR-GGGELGQQWYEDGKFLKKKNTFNDYLDACD 513 (686)
T ss_pred EEEEECCCC---------CCCCCCc---c-HHHHHHHHCCcEEEEEEcC-CCCccCHHHHHhhhhhcCCCcHHHHHHHHH
Confidence 999965431 1111233 2 567999999999999 999 99999999997 3445689999999999
Q ss_pred HHHHcCCccCCceEEEee
Q 007140 592 EVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 592 ~l~~~~~vD~~ri~~~~~ 609 (616)
||+++|++|++||+|.+.
T Consensus 514 ~Lv~~g~~d~~rl~i~G~ 531 (686)
T PRK10115 514 ALLKLGYGSPSLCYGMGG 531 (686)
T ss_pred HHHHcCCCChHHeEEEEE
Confidence 999999999999999985
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.7e-23 Score=206.47 Aligned_cols=206 Identities=14% Similarity=0.169 Sum_probs=151.2
Q ss_pred cccEEEEEecCCCCCCCcceeEeeecC-CCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEE
Q 007140 377 EQIYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYH 455 (616)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~ 455 (616)
...-+||+|...++.....++ +... .|+..+|+... +... -.++-+-+.|+...++...|+.+.
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyv--vsye~~g~~~rlt~~g----~sh~---------~~l~~~~d~fv~~~~sv~sP~cv~ 578 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYV--VSYENPGEIARLTEPG----YSHS---------CELDQQCDHFVSYYSSVGSPPCVS 578 (867)
T ss_pred cceEEEEEccCCCCceeeEEE--EEEecCCceeeccCCC----cccc---------hhhhhhhhhHhhhhhcCCCCceEE
Confidence 345677777655555544443 3333 67888886422 2111 123334456888899999999999
Q ss_pred EEeCCCCce----eeeeeC---CCCCCcccCC-ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCccccc
Q 007140 456 ILSWPLKKS----SQITNF---PHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSK 527 (616)
Q Consensus 456 ~~~~~~~~~----~~Lt~~---~~~~~~~~~~-~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~ 527 (616)
++.+..++- +|.... -.....+... ++|.|.|++.-|.+++|.+|+|.+|+++||| |+++++|+|+
T Consensus 579 ~y~ls~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkY--ptvl~VYGGP---- 652 (867)
T KOG2281|consen 579 LYSLSWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKY--PTVLNVYGGP---- 652 (867)
T ss_pred EEeccCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCC--ceEEEEcCCC----
Confidence 998876542 221111 0112233344 7899999998899999999999999999999 8999988753
Q ss_pred ccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCccC---ChhHHHHHHHHHHHHHHHHHc-CCccCC
Q 007140 528 DAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRR-GVGLPI 602 (616)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~~~v~~l~~~-~~vD~~ 602 (616)
.=|.+. +.|-...++-.++||++||+|+. |.| ||..+|.+|+. +++|..+.+|+++|+++|+++ |+||.+
T Consensus 653 --~VQlVn--nsfkgi~ylR~~~LaslGy~Vv~IDnR-GS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmd 727 (867)
T KOG2281|consen 653 --GVQLVN--NSFKGIQYLRFCRLASLGYVVVFIDNR-GSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMD 727 (867)
T ss_pred --ceEEee--ccccceehhhhhhhhhcceEEEEEcCC-CccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccch
Confidence 344443 45543344668999999999999 999 99999999996 899999999999999999999 799999
Q ss_pred ceEEEe
Q 007140 603 LYLNTT 608 (616)
Q Consensus 603 ri~~~~ 608 (616)
||||-+
T Consensus 728 rV~vhG 733 (867)
T KOG2281|consen 728 RVGVHG 733 (867)
T ss_pred heeEec
Confidence 999975
No 4
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.7e-20 Score=194.62 Aligned_cols=231 Identities=11% Similarity=0.063 Sum_probs=165.1
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCe-EEEEEeeccccccCCCceeEEEEECCCCceEecccCCC
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (616)
...||+.+.. +.+.++++. .+ ....|+|||||++ ++|++.. .+..+||++|+++|+.++|+..+.
T Consensus 168 ~~~l~~~d~d----g~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 168 KSNIVLADYT----LTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred cceEEEECCC----CCceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCC
Confidence 4578888753 245666762 23 4679999999997 6665543 246799999999999999986543
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEE
Q 007140 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (616)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (616)
. ...+.|||||+.|+|+... + ...+||++
T Consensus 234 ~-----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~ 262 (419)
T PRK04043 234 M-----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLY 262 (419)
T ss_pred c-----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEE
Confidence 2 3468899999999996310 0 13689999
Q ss_pred eC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCc
Q 007140 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (616)
Q Consensus 163 d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (616)
++ +++.++|+... ....+.|||||++|+|++++.. ..+||++|+++++.++++..
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~------------- 319 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFH------------- 319 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccC-------------
Confidence 99 56888998654 3457899999999999987543 34899999999888777641
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeecc
Q 007140 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (616)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (616)
+.....|||||+. |+|+......+. ......++++++ ++|+.+.|+... ....|.|||||+.+++....
T Consensus 320 --g~~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~- 388 (419)
T PRK04043 320 --GKNNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYL- 388 (419)
T ss_pred --CCcCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEcc-
Confidence 1123589999985 666632211100 001246788787 778888888653 34579999999988776543
Q ss_pred CccEEEEEEeCCC
Q 007140 321 TSQTRTWLVCPGS 333 (616)
Q Consensus 321 ~~~~~l~~~d~~~ 333 (616)
.+...|+.+++++
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 4566899999988
No 5
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=1.6e-20 Score=196.38 Aligned_cols=251 Identities=14% Similarity=0.085 Sum_probs=170.7
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCe--EEEEEeeccccccCCCceeEEEEECCCCceEecccCC
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~ 81 (616)
-+.||+.+.. +++.++||.. ......|+|||||++ ++|++.+ ++..+||++++++|+.++|+..+
T Consensus 164 ~~~l~~~d~d----G~~~~~lt~~--~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 164 QGELWSVDYD----GQNLRPLTQE--HSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred cceEEEEcCC----CCCceEcccC--CCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecCC
Confidence 5689999874 4788999842 224689999999998 5557764 45789999999999999998765
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEE
Q 007140 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (616)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (616)
.. ...+.|||||++|+|+.... | ..++|+
T Consensus 231 g~-----~~~p~wSPDG~~Laf~s~~~---------------------g-------------------------~~di~~ 259 (428)
T PRK01029 231 GN-----QLMPTFSPRKKLLAFISDRY---------------------G-------------------------NPDLFI 259 (428)
T ss_pred CC-----ccceEECCCCCEEEEEECCC---------------------C-------------------------CcceeE
Confidence 43 34789999999999974210 1 112333
Q ss_pred --EeC-C---CCeeecCCCC--ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC--CceEEEecCCCCCC
Q 007140 162 --GSL-D---GTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (616)
Q Consensus 162 --~d~-~---g~~~~l~~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (616)
+++ . |++++|+... ....++|||||++|+|.+.... ..+||++++. +++.+.++...
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~~--- 326 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKKY--- 326 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccCC---
Confidence 343 2 3667777542 3457899999999999975432 2378999875 34556665421
Q ss_pred CCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCc
Q 007140 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~ 311 (616)
.....+.|||||+. |+|+...+ ....+++++. .+++.+.|+........+.|+|||+
T Consensus 327 ----------~~~~~p~wSPDG~~-Laf~~~~~---------g~~~I~v~dl---~~g~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 327 ----------RNSSCPAWSPDGKK-IAFCSVIK---------GVRQICVYDL---ATGRDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ----------CCccceeECCCCCE-EEEEEcCC---------CCcEEEEEEC---CCCCeEEccCCCCCccceEECCCCC
Confidence 01235889999985 66663211 1236777787 7788888876555567899999999
Q ss_pred eEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCC
Q 007140 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTG 364 (616)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dg 364 (616)
.|++.... .+...||+++++++ +.+.|+...... ..++|+|-.
T Consensus 384 ~L~f~~~~-~g~~~L~~vdl~~g--~~~~Lt~~~g~~-------~~p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGN-SNESELYLISLITK--KTRKIVIGSGEK-------RFPSWGAFP 426 (428)
T ss_pred EEEEEECC-CCCceEEEEECCCC--CEEEeecCCCcc-------cCceecCCC
Confidence 87765432 34568999999884 456665322211 127888753
No 6
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2.9e-20 Score=195.23 Aligned_cols=235 Identities=15% Similarity=0.138 Sum_probs=168.7
Q ss_pred ccceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCC
Q 007140 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (616)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (616)
+.+.||+.+... ++.++++... ..+..|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 177 ~~~~l~~~d~dg----~~~~~lt~~~--~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYDG----YNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCCC----CCCEEeecCC--CceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 456899998753 6778887422 257899999999999999753 456899999999999999986544
Q ss_pred ccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEE
Q 007140 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (616)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~ 162 (616)
. ...+.|||||+.|+|+... . ...+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~---------------------~-------------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSK---------------------T-------------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcC---------------------C-------------------------CCcEEEEE
Confidence 2 4579999999999996310 0 12469999
Q ss_pred eC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCc
Q 007140 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (616)
Q Consensus 163 d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (616)
|+ +++.++|+... ....+.|||||++|+|++.+.. ..+||++++++++.+.++...
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~~------------ 330 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWEG------------ 330 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecCC------------
Confidence 99 56888887654 4568999999999999986432 237999999988777765411
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeecc
Q 007140 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (616)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~ 320 (616)
.....+.|||||+. |+++...+ ....+++++. .+++.+.|+.. .....+.|||||+.|++... +
T Consensus 331 -~~~~~~~~SpDG~~-Ia~~~~~~---------g~~~I~~~dl---~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~-~ 394 (429)
T PRK03629 331 -SQNQDADVSSDGKF-MVMVSSNG---------GQQHIAKQDL---ATGGVQVLTDT-FLDETPSIAPNGTMVIYSSS-Q 394 (429)
T ss_pred -CCccCEEECCCCCE-EEEEEccC---------CCceEEEEEC---CCCCeEEeCCC-CCCCCceECCCCCEEEEEEc-C
Confidence 01235789999985 66653211 1235777787 67777777743 33457999999998887664 3
Q ss_pred CccEEEEEEeCCCCCCCceEE
Q 007140 321 TSQTRTWLVCPGSKDVAPRVL 341 (616)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l 341 (616)
.+...|+++++++. ..+.|
T Consensus 395 ~~~~~l~~~~~~G~--~~~~l 413 (429)
T PRK03629 395 GMGSVLNLVSTDGR--FKARL 413 (429)
T ss_pred CCceEEEEEECCCC--CeEEC
Confidence 34567999999873 34555
No 7
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.87 E-value=5.1e-20 Score=194.59 Aligned_cols=235 Identities=14% Similarity=0.162 Sum_probs=166.8
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCc
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (616)
...||+.+.. +++.++++.... .+..|+|||||++|+|++.. ++..+||++++++|+.++++..+..
T Consensus 181 ~~~l~~~d~d----g~~~~~lt~~~~--~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQD----GANVRYLTDGSS--LVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCC----CCCcEEEecCCC--CeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 4578888864 367788884322 58899999999999999864 4568999999999999999765532
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEe
Q 007140 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (616)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d 163 (616)
...+.|||||+.|+|+... + ...+||++|
T Consensus 248 -----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEE
Confidence 4578999999999886310 0 135799999
Q ss_pred C-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCcc
Q 007140 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (616)
Q Consensus 164 ~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (616)
+ +++.++|+... ....+.|||||++|+|.+.... ..+||++|+++++.+.++....
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~~~~------------ 334 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISFGGG------------ 334 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeecCCC------------
Confidence 9 56888888654 3457999999999999976432 2479999999888887764210
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccC
Q 007140 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (616)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~ 321 (616)
....+.|||||+. |++... +. ....+++++. +++..+.++.. .....+.|||||+.|++......
T Consensus 335 -~~~~~~~SpdG~~-ia~~~~-~~--------~~~~i~~~d~---~~~~~~~lt~~-~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 335 -RYSTPVWSPRGDL-IAFTKQ-GG--------GQFSIGVMKP---DGSGERILTSG-FLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred -cccCeEECCCCCE-EEEEEc-CC--------CceEEEEEEC---CCCceEeccCC-CCCCCCeECCCCCEEEEEEccCC
Confidence 0224789999985 666531 11 1235666676 65565556543 35678999999998777543221
Q ss_pred c--cEEEEEEeCCCCCCCceEE
Q 007140 322 S--QTRTWLVCPGSKDVAPRVL 341 (616)
Q Consensus 322 ~--~~~l~~~d~~~~~~~~~~l 341 (616)
. ...||+++++++ ..+.|
T Consensus 400 ~~~~~~L~~~dl~g~--~~~~l 419 (435)
T PRK05137 400 SGGAPKLYTVDLTGR--NEREV 419 (435)
T ss_pred CCCcceEEEEECCCC--ceEEc
Confidence 1 158999999873 44544
No 8
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.85 E-value=5.4e-19 Score=186.38 Aligned_cols=227 Identities=17% Similarity=0.128 Sum_probs=160.7
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..||+.+.. +.+.++++.... .+..|+|||||++|+|++.. ++..+||++|+.+|+.++++..+..
T Consensus 198 ~~l~i~d~d----G~~~~~l~~~~~--~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~- 263 (448)
T PRK04792 198 YQLMIADYD----GYNEQMLLRSPE--PLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI- 263 (448)
T ss_pred eEEEEEeCC----CCCceEeecCCC--cccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC-
Confidence 456666653 245677774332 47899999999999999864 4568999999999998888755432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|||||+.|+|+... + ...+||++|+
T Consensus 264 ----~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~dl 293 (448)
T PRK04792 264 ----NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVDI 293 (448)
T ss_pred ----cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEEC
Confidence 3478999999999986311 0 1357999999
Q ss_pred -CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 -~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
+++.++|+... ....++|||||++|+|++.... ..+||++|+++++.+.++... .
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~~g-------------~ 350 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTFEG-------------E 350 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEecCC-------------C
Confidence 56888887653 3457899999999999975432 247999999988777765310 0
Q ss_pred CCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCc
Q 007140 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (616)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (616)
....+.|+|||+. |++.... . ....++.++. ++++.+.++... ....+.|+|||+.+++.... .+
T Consensus 351 ~~~~~~~SpDG~~-l~~~~~~-~--------g~~~I~~~dl---~~g~~~~lt~~~-~d~~ps~spdG~~I~~~~~~-~g 415 (448)
T PRK04792 351 QNLGGSITPDGRS-MIMVNRT-N--------GKFNIARQDL---ETGAMQVLTSTR-LDESPSVAPNGTMVIYSTTY-QG 415 (448)
T ss_pred CCcCeeECCCCCE-EEEEEec-C--------CceEEEEEEC---CCCCeEEccCCC-CCCCceECCCCCEEEEEEec-CC
Confidence 0124689999984 6665321 1 1235676776 667777776443 33468999999988776533 35
Q ss_pred cEEEEEEeCCC
Q 007140 323 QTRTWLVCPGS 333 (616)
Q Consensus 323 ~~~l~~~d~~~ 333 (616)
...||++++++
T Consensus 416 ~~~l~~~~~~G 426 (448)
T PRK04792 416 KQVLAAVSIDG 426 (448)
T ss_pred ceEEEEEECCC
Confidence 56899999976
No 9
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=9.5e-19 Score=184.02 Aligned_cols=227 Identities=17% Similarity=0.151 Sum_probs=160.0
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..||+.+.. +...++++.... .+..|+|||||++|+|++.. ++..+||++|+++|+.++++..+..
T Consensus 176 ~~L~~~D~d----G~~~~~l~~~~~--~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g~- 241 (427)
T PRK02889 176 YQLQISDAD----GQNAQSALSSPE--PIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKGS- 241 (427)
T ss_pred cEEEEECCC----CCCceEeccCCC--CcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 467777752 245577763322 47899999999999999854 4467899999999998888755432
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|||||+.|+|.... + ...+||++|+
T Consensus 242 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~ 271 (427)
T PRK02889 242 ----NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNA 271 (427)
T ss_pred ----ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEEC
Confidence 4578999999999986321 0 1357999999
Q ss_pred C-CCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 D-GTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 ~-g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
. ++.++|+... ....+.|||||++|+|++++.. ..+||++++.+++.+.++... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~ 328 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------S 328 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------C
Confidence 4 5788887643 3457899999999999875432 237899998877766665310 0
Q ss_pred CCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCc
Q 007140 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (616)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (616)
....+.|||||+. |++.... + ....+++++. .+++.+.++... ....+.|+|||+.|++.... .+
T Consensus 329 ~~~~~~~SpDG~~-Ia~~s~~-~--------g~~~I~v~d~---~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~-~g 393 (427)
T PRK02889 329 YNTSPRISPDGKL-LAYISRV-G--------GAFKLYVQDL---ATGQVTALTDTT-RDESPSFAPNGRYILYATQQ-GG 393 (427)
T ss_pred CcCceEECCCCCE-EEEEEcc-C--------CcEEEEEEEC---CCCCeEEccCCC-CccCceECCCCCEEEEEEec-CC
Confidence 0124789999985 6665321 1 1125777787 667777776542 34679999999988776543 35
Q ss_pred cEEEEEEeCCC
Q 007140 323 QTRTWLVCPGS 333 (616)
Q Consensus 323 ~~~l~~~d~~~ 333 (616)
...||.+++++
T Consensus 394 ~~~l~~~~~~g 404 (427)
T PRK02889 394 RSVLAAVSSDG 404 (427)
T ss_pred CEEEEEEECCC
Confidence 66899999976
No 10
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=1.9e-18 Score=180.67 Aligned_cols=265 Identities=15% Similarity=0.158 Sum_probs=170.0
Q ss_pred cceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEE--EEecCCCCC
Q 007140 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI--FTIPSSRRD 111 (616)
Q Consensus 34 ~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~--~~~~~~~~~ 111 (616)
..+.++ +++|||+......+. +....+||++|.+++++++||..... ...+.|||||+.++ |++..
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~-~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~---- 207 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDT-ELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYK---- 207 (428)
T ss_pred CCCccc--cCEEEEEEeeCCccc-ccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEcc----
Confidence 345556 999999987621100 12357999999999999999865432 45899999998744 44210
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYV 189 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i 189 (616)
+ ...+||++++ .|+.++|+... ....++|||||++|
T Consensus 208 -----------------------------------~-------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 208 -----------------------------------L-------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred -----------------------------------C-------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 0 1368999999 56888887543 34578999999999
Q ss_pred EEEeccCCCcccccCcccCccEEEE--eCCC---ceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeec
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVW--TTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~--d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (616)
+|+..... ..++++. ++.+ ++.+.++.... .....+.|||||+. |+|+...+
T Consensus 246 af~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~~------------~~~~~p~wSPDG~~-Laf~s~~~ 302 (428)
T PRK01029 246 AFISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEAF------------GTQGNPSFSPDGTR-LVFVSNKD 302 (428)
T ss_pred EEEECCCC----------CcceeEEEeecccCCCCcceEeecCCC------------CCcCCeEECCCCCE-EEEEECCC
Confidence 99975432 1256664 5443 34555554110 00135899999985 76763211
Q ss_pred CCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeec
Q 007140 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (616)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (616)
....+|.++. .-.+++.+.++........+.|||||+.|++.... .+..+||++|++++ +.+.|+..
T Consensus 303 ---------g~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g--~~~~Lt~~ 369 (428)
T PRK01029 303 ---------GRPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATG--RDYQLTTS 369 (428)
T ss_pred ---------CCceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCC--CeEEccCC
Confidence 1235666554 11234466676555556789999999988776532 24568999999884 55666533
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeecCCCceeeeeec
Q 007140 345 VFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (616)
Q Consensus 345 ~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (616)
.... ..+.|+|||+.|++.....+ ...+| .+|+++++.++|+..
T Consensus 370 ~~~~-------~~p~wSpDG~~L~f~~~~~g--~~~L~----------------~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 370 PENK-------ESPSWAIDSLHLVYSAGNSN--ESELY----------------LISLITKKTRKIVIG 413 (428)
T ss_pred CCCc-------cceEECCCCCEEEEEECCCC--CceEE----------------EEECCCCCEEEeecC
Confidence 2110 12899999999988765332 22344 578888888877643
No 11
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=2.1e-18 Score=182.23 Aligned_cols=231 Identities=15% Similarity=0.165 Sum_probs=162.5
Q ss_pred CCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCC
Q 007140 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (616)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (616)
..+|||++..... .....+||++|.+++..+++|..... +..+.|||||+.|+|+...
T Consensus 165 ~~~iafv~~~~~~---~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~-------------- 222 (435)
T PRK05137 165 DTRIVYVAESGPK---NKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYA-------------- 222 (435)
T ss_pred CCeEEEEEeeCCC---CCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEec--------------
Confidence 5689999875210 01257999999998888999865432 5689999999999996321
Q ss_pred CeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCc
Q 007140 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYS 199 (616)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~ 199 (616)
+ ...+||++|+ +|+.++|+... ....++|||||++|+|+.....
T Consensus 223 --------~------------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 223 --------N------------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred --------C------------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 0 1358999999 66777777543 4457899999999998865432
Q ss_pred ccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeE
Q 007140 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (616)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (616)
..+||++|+.+++.+.|+..+.. ...+.|+|||+. |+|.... .....+|
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~~~~-------------~~~~~~spDG~~-i~f~s~~---------~g~~~Iy 317 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDSPAI-------------DTSPSYSPDGSQ-IVFESDR---------SGSPQLY 317 (435)
T ss_pred --------CceEEEEECCCCceEEccCCCCc-------------cCceeEcCCCCE-EEEEECC---------CCCCeEE
Confidence 34899999998888888763211 235889999985 6665211 1124688
Q ss_pred eccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCee
Q 007140 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (616)
Q Consensus 280 ~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~ 359 (616)
+++. ++++.+.++.....+..+.|||||+.+++... ..+..+|++++++++ ..+.++... . . ..+.
T Consensus 318 ~~d~---~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~-~~~~~~i~~~d~~~~--~~~~lt~~~-~--~-----~~p~ 383 (435)
T PRK05137 318 VMNA---DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ-GGGQFSIGVMKPDGS--GERILTSGF-L--V-----EGPT 383 (435)
T ss_pred EEEC---CCCCeEEeecCCCcccCeEECCCCCEEEEEEc-CCCceEEEEEECCCC--ceEeccCCC-C--C-----CCCe
Confidence 8887 77778888765555677999999998877653 234468999999773 345453221 1 0 1289
Q ss_pred eCCCCCEEEEEeee
Q 007140 360 RTSTGTNVIAKIKK 373 (616)
Q Consensus 360 ~s~dgk~l~~~~~~ 373 (616)
|+|||+.|++....
T Consensus 384 ~spDG~~i~~~~~~ 397 (435)
T PRK05137 384 WAPNGRVIMFFRQT 397 (435)
T ss_pred ECCCCCEEEEEEcc
Confidence 99999999887653
No 12
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.9e-18 Score=182.34 Aligned_cols=233 Identities=15% Similarity=0.103 Sum_probs=164.3
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..||+.+.. +++.++|+... ..+..|+|||||++|+|++.. .+..+||++++++|+.++++..+..
T Consensus 184 ~~l~i~D~~----g~~~~~lt~~~--~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~- 249 (433)
T PRK04922 184 YALQVADSD----GYNPQTILRSA--EPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI- 249 (433)
T ss_pred EEEEEECCC----CCCceEeecCC--CccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC-
Confidence 457777653 35678887432 247899999999999999753 4568999999999998888755431
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|||||+.|+|+... + ...+||++|+
T Consensus 250 ----~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~ 279 (433)
T PRK04922 250 ----NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDL 279 (433)
T ss_pred ----ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEEC
Confidence 4578999999999886311 0 1257999999
Q ss_pred -CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 -~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
+|+.++|+... ....++|||||++|+|++.+.. ..+||++++.+++.+.++... .
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g-------------~ 336 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQG-------------N 336 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCC-------------C
Confidence 66888887643 3357899999999999976432 237999999887777765311 0
Q ss_pred CCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCc
Q 007140 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (616)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (616)
....+.|||||+. |++... +. ....+++++. .+++.+.|+... ....+.|+|||+.+++.... .+
T Consensus 337 ~~~~~~~SpDG~~-Ia~~~~-~~--------~~~~I~v~d~---~~g~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 337 YNARASVSPDGKK-IAMVHG-SG--------GQYRIAVMDL---STGSVRTLTPGS-LDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred CccCEEECCCCCE-EEEEEC-CC--------CceeEEEEEC---CCCCeEECCCCC-CCCCceECCCCCEEEEEEec-CC
Confidence 0124789999985 666522 11 1225777787 667777776543 34578999999987776543 35
Q ss_pred cEEEEEEeCCCCCCCceEE
Q 007140 323 QTRTWLVCPGSKDVAPRVL 341 (616)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (616)
...||.+++++. ..+.+
T Consensus 402 ~~~L~~~~~~g~--~~~~l 418 (433)
T PRK04922 402 RGVLAAVSTDGR--VRQRL 418 (433)
T ss_pred ceEEEEEECCCC--ceEEc
Confidence 568999999873 34545
No 13
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=2.3e-18 Score=182.29 Aligned_cols=225 Identities=17% Similarity=0.154 Sum_probs=159.4
Q ss_pred eEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcccc
Q 007140 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (616)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~ 86 (616)
|++.+.. +++.++++.. ...+..|+|||||++|+|++.. ++..+||++++++|+.++++.....
T Consensus 181 l~~~d~~----g~~~~~l~~~--~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~--- 244 (430)
T PRK00178 181 LQRSDYD----GARAVTLLQS--REPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL--- 244 (430)
T ss_pred EEEECCC----CCCceEEecC--CCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC---
Confidence 5555542 3567778632 2247899999999999999754 3567999999999999999755431
Q ss_pred ccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-C
Q 007140 87 AVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D 165 (616)
Q Consensus 87 ~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~ 165 (616)
...+.|||||+.|+|.... + ...+||++|+ +
T Consensus 245 --~~~~~~SpDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~~ 276 (430)
T PRK00178 245 --NGAPAWSPDGSKLAFVLSK---------------------------------------D-------GNPEIYVMDLAS 276 (430)
T ss_pred --cCCeEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECCC
Confidence 3478999999999986311 0 1257999999 5
Q ss_pred CCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCC
Q 007140 166 GTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGM 244 (616)
Q Consensus 166 g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (616)
++.++|+... ....+.|||||++|+|.+.... ..+||++++.+++.+.++... ...
T Consensus 277 ~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~~ 333 (430)
T PRK00178 277 RQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NYN 333 (430)
T ss_pred CCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CCc
Confidence 6788887653 3457899999999999976432 247999999888777665310 001
Q ss_pred CcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccE
Q 007140 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (616)
Q Consensus 245 ~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (616)
..+.|||||+. |++....+ ....+++++. .+++.+.|+... ....+.|||||+.+++.... .+..
T Consensus 334 ~~~~~Spdg~~-i~~~~~~~---------~~~~l~~~dl---~tg~~~~lt~~~-~~~~p~~spdg~~i~~~~~~-~g~~ 398 (430)
T PRK00178 334 ARPRLSADGKT-LVMVHRQD---------GNFHVAAQDL---QRGSVRILTDTS-LDESPSVAPNGTMLIYATRQ-QGRG 398 (430)
T ss_pred cceEECCCCCE-EEEEEccC---------CceEEEEEEC---CCCCEEEccCCC-CCCCceECCCCCEEEEEEec-CCce
Confidence 24789999985 66653211 1224777787 777777777543 33468999999988776543 3566
Q ss_pred EEEEEeCCC
Q 007140 325 RTWLVCPGS 333 (616)
Q Consensus 325 ~l~~~d~~~ 333 (616)
.||.+++++
T Consensus 399 ~l~~~~~~g 407 (430)
T PRK00178 399 VLMLVSING 407 (430)
T ss_pred EEEEEECCC
Confidence 899999986
No 14
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=1.3e-17 Score=175.15 Aligned_cols=228 Identities=18% Similarity=0.189 Sum_probs=160.3
Q ss_pred CeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCC
Q 007140 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (616)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (616)
++|||+...... ....+||++|.+++..+++|.... . ...+.|||||+.|+|+...
T Consensus 164 ~riayv~~~~~~----~~~~~l~~~d~dg~~~~~lt~~~~-~----~~~p~wSPDG~~la~~s~~--------------- 219 (429)
T PRK03629 164 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQ-P----LMSPAWSPDGSKLAYVTFE--------------- 219 (429)
T ss_pred CeEEEEEeeCCC----CcceeEEEEcCCCCCCEEeecCCC-c----eeeeEEcCCCCEEEEEEec---------------
Confidence 889999875211 336799999999888889986543 2 5689999999999996311
Q ss_pred eeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCC-CceeeeeECCCCcEEEEEeccCCCcc
Q 007140 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (616)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (616)
. ...+|+++++ +|+.++|+.. .....+.|||||++|+|......
T Consensus 220 -------~------------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 220 -------S------------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred -------C------------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 0 1357899999 5688887754 34557999999999999865322
Q ss_pred cccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEe
Q 007140 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (616)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (616)
..+||++|+++++.++++.... ....+.|+|||+. |+|.... . ....+|.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~~-------------~~~~~~wSPDG~~-I~f~s~~-~--------g~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGRS-------------NNTEPTWFPDSQN-LAYTSDQ-A--------GRPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCCC-------------CcCceEECCCCCE-EEEEeCC-C--------CCceEEE
Confidence 2379999999888887765211 1235899999985 6665311 1 1236777
Q ss_pred ccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeee
Q 007140 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (616)
Q Consensus 281 ~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~ 360 (616)
++. ++++.+.++........+.|||||+.+++.... .+..+||++|+++ ++.+.|+.... + ..+.|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~--g~~~~Lt~~~~-~-------~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLAT--GGVQVLTDTFL-D-------ETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCC--CCeEEeCCCCC-C-------CCceE
Confidence 787 777777776544445679999999987775432 2445899999988 34566653211 1 12899
Q ss_pred CCCCCEEEEEee
Q 007140 361 TSTGTNVIAKIK 372 (616)
Q Consensus 361 s~dgk~l~~~~~ 372 (616)
+|||+.|++...
T Consensus 382 SpDG~~i~~~s~ 393 (429)
T PRK03629 382 APNGTMVIYSSS 393 (429)
T ss_pred CCCCCEEEEEEc
Confidence 999999998875
No 15
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.9e-17 Score=172.02 Aligned_cols=225 Identities=14% Similarity=0.118 Sum_probs=157.7
Q ss_pred CeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE-EEEEecCCCCCCCCCcccCCC
Q 007140 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL-LIFTIPSSRRDPPKKTMVPLG 121 (616)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~-l~~~~~~~~~~~~~~~~~~~g 121 (616)
.+|||++... + ....+||++|.++...++++... . ...+.|||||+. ++|+...
T Consensus 155 ~r~~~v~~~~---~--~~~~~l~~~d~dg~~~~~~~~~~--~----~~~p~wSpDG~~~i~y~s~~-------------- 209 (419)
T PRK04043 155 KRKVVFSKYT---G--PKKSNIVLADYTLTYQKVIVKGG--L----NIFPKWANKEQTAFYYTSYG-------------- 209 (419)
T ss_pred eeEEEEEEcc---C--CCcceEEEECCCCCceeEEccCC--C----eEeEEECCCCCcEEEEEEcc--------------
Confidence 5778876521 0 23689999999988888887543 1 457999999996 5554211
Q ss_pred CeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCc
Q 007140 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYS 199 (616)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~ 199 (616)
+ ...+||++|+ +|+.++|+..+ ....+.|||||++|+|+.....
T Consensus 210 --------~------------------------~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g-- 255 (419)
T PRK04043 210 --------E------------------------RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG-- 255 (419)
T ss_pred --------C------------------------CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC--
Confidence 0 1358999999 67888887643 3456899999999999976432
Q ss_pred ccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeE
Q 007140 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (616)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (616)
..+||++++.+++.+.|+..+.. ...+.|+|||+. |+|+... .....+|
T Consensus 256 --------~~~Iy~~dl~~g~~~~LT~~~~~-------------d~~p~~SPDG~~-I~F~Sdr---------~g~~~Iy 304 (419)
T PRK04043 256 --------QPDIYLYDTNTKTLTQITNYPGI-------------DVNGNFVEDDKR-IVFVSDR---------LGYPNIF 304 (419)
T ss_pred --------CcEEEEEECCCCcEEEcccCCCc-------------cCccEECCCCCE-EEEEECC---------CCCceEE
Confidence 35899999999888888764321 224789999985 7776321 1224788
Q ss_pred eccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccC-----ccEEEEEEeCCCCCCCceEEeecccccccCCCC
Q 007140 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT-----SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG 354 (616)
Q Consensus 280 ~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~-----~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g 354 (616)
.+++ ++|+.++++.... ..+.|||||+.+++...... +..+||++|++++ ..+.|+......
T Consensus 305 ~~dl---~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~~~~------ 371 (419)
T PRK04043 305 MKKL---NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANGVNQ------ 371 (419)
T ss_pred EEEC---CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCCCcC------
Confidence 8888 7788877764322 24699999998777653221 2368999999884 567776532111
Q ss_pred CCCeeeCCCCCEEEEEee
Q 007140 355 SPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 355 ~~~~~~s~dgk~l~~~~~ 372 (616)
.+.|+|||+.|+|...
T Consensus 372 --~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 372 --FPRFSSDGGSIMFIKY 387 (419)
T ss_pred --CeEECCCCCEEEEEEc
Confidence 2899999999998865
No 16
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.2e-17 Score=170.28 Aligned_cols=230 Identities=17% Similarity=0.151 Sum_probs=159.6
Q ss_pred CCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCC
Q 007140 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (616)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (616)
..+|||++..... ....+||++|.++...+++|..... +..+.|||||++|+|+...
T Consensus 182 ~~riayv~~~~~~----~~~~~l~i~d~dG~~~~~l~~~~~~-----~~~p~wSPDG~~La~~s~~-------------- 238 (448)
T PRK04792 182 LTRIAYVVVNDKD----KYPYQLMIADYDGYNEQMLLRSPEP-----LMSPAWSPDGRKLAYVSFE-------------- 238 (448)
T ss_pred cCEEEEEEeeCCC----CCceEEEEEeCCCCCceEeecCCCc-----ccCceECCCCCEEEEEEec--------------
Confidence 4788998765210 2246999999988888888866542 5689999999999996321
Q ss_pred CeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCc
Q 007140 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYS 199 (616)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~ 199 (616)
+ ...+||++|+ +|+.++++... ....++|||||++|+|+.....
T Consensus 239 -------------------------~-------g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g-- 284 (448)
T PRK04792 239 -------------------------N-------RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG-- 284 (448)
T ss_pred -------------------------C-------CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC--
Confidence 0 1358999999 56877777543 3457899999999999865432
Q ss_pred ccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeE
Q 007140 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (616)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (616)
..+||++|+++++.+.++.... ....+.|+|||+. |++.... .....+|
T Consensus 285 --------~~~Iy~~dl~tg~~~~lt~~~~-------------~~~~p~wSpDG~~-I~f~s~~---------~g~~~Iy 333 (448)
T PRK04792 285 --------QPEIYVVDIATKALTRITRHRA-------------IDTEPSWHPDGKS-LIFTSER---------GGKPQIY 333 (448)
T ss_pred --------CeEEEEEECCCCCeEECccCCC-------------CccceEECCCCCE-EEEEECC---------CCCceEE
Confidence 3479999999888887765211 1235889999985 6665221 1124678
Q ss_pred eccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCee
Q 007140 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (616)
Q Consensus 280 ~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~ 359 (616)
.++. .+++.+.|+........+.|||||+.+++.... .+..+||++|++++ +.+.|+...... .+.
T Consensus 334 ~~dl---~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g--~~~~lt~~~~d~--------~ps 399 (448)
T PRK04792 334 RVNL---ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETG--AMQVLTSTRLDE--------SPS 399 (448)
T ss_pred EEEC---CCCCEEEEecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCC--CeEEccCCCCCC--------Cce
Confidence 7787 777777776333334468999999987775532 34568999999884 456565332211 278
Q ss_pred eCCCCCEEEEEeee
Q 007140 360 RTSTGTNVIAKIKK 373 (616)
Q Consensus 360 ~s~dgk~l~~~~~~ 373 (616)
|+|||+.|++....
T Consensus 400 ~spdG~~I~~~~~~ 413 (448)
T PRK04792 400 VAPNGTMVIYSTTY 413 (448)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999887753
No 17
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=4e-17 Score=171.97 Aligned_cols=226 Identities=18% Similarity=0.163 Sum_probs=153.4
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..|||.+.. ++..++|+... ..+..|+|||||++|||++.. ++..+||++++.+|+.++++.....
T Consensus 184 ~~i~i~d~d----g~~~~~lt~~~--~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~- 249 (429)
T PRK01742 184 YEVRVADYD----GFNQFIVNRSS--QPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH- 249 (429)
T ss_pred EEEEEECCC----CCCceEeccCC--CccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc-
Confidence 456777653 24566666322 247899999999999999753 3467999999999988888654431
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|||||+.|++.... + ...+||++|+
T Consensus 250 ----~~~~~wSPDG~~La~~~~~---------------------~-------------------------g~~~Iy~~d~ 279 (429)
T PRK01742 250 ----NGAPAFSPDGSRLAFASSK---------------------D-------------------------GVLNIYVMGA 279 (429)
T ss_pred ----cCceeECCCCCEEEEEEec---------------------C-------------------------CcEEEEEEEC
Confidence 3478999999999986310 0 1246999999
Q ss_pred -CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 -~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
+++.++|+... ....+.|||||++|+|.+.... ..+||.++..++..+.+.. .
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~---------------~ 334 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG---------------R 334 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC---------------C
Confidence 55788887654 4568999999999999976432 2378889888776655432 0
Q ss_pred CCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCc
Q 007140 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (616)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (616)
+ ..+.|||||+. |++.. .+.++.++. .+|+.+.++.. .....+.|+|||+.|++... +.+
T Consensus 335 ~-~~~~~SpDG~~-ia~~~-------------~~~i~~~Dl---~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~ 394 (429)
T PRK01742 335 G-YSAQISADGKT-LVMIN-------------GDNVVKQDL---TSGSTEVLSST-FLDESPSISPNGIMIIYSST-QGL 394 (429)
T ss_pred C-CCccCCCCCCE-EEEEc-------------CCCEEEEEC---CCCCeEEecCC-CCCCCceECCCCCEEEEEEc-CCC
Confidence 1 24679999984 55541 123555676 66666666533 23467899999998877653 334
Q ss_pred cEEEEEEeCCCCCCCceEE
Q 007140 323 QTRTWLVCPGSKDVAPRVL 341 (616)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l 341 (616)
...++++++++. ..+.|
T Consensus 395 ~~~l~~~~~~G~--~~~~l 411 (429)
T PRK01742 395 GKVLQLVSADGR--FKARL 411 (429)
T ss_pred ceEEEEEECCCC--ceEEc
Confidence 445677777762 34444
No 18
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.9e-17 Score=169.47 Aligned_cols=227 Identities=17% Similarity=0.206 Sum_probs=156.7
Q ss_pred CeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCC
Q 007140 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (616)
Q Consensus 43 ~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~ 122 (616)
.+|||++.. .+..+||++|.++...++++..... +..+.|||||+.|+|+...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~--------------- 216 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFE--------------- 216 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEcc---------------
Confidence 679999753 3467999999987777888755442 5689999999999996311
Q ss_pred eeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCC-CceeeeeECCCCcEEEEEeccCCCcc
Q 007140 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (616)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (616)
. ...+||++|+ +|+.++++.. .....++|||||++|+|+.....
T Consensus 217 -------~------------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 217 -------S------------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred -------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 0 1357999999 5677777643 34457999999999999865432
Q ss_pred cccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEe
Q 007140 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (616)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~ 280 (616)
..+||++|+.+++.+.++..... ...+.|+|||+. |++.. +. .....+|.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~wSpDG~~-l~f~s--~~-------~g~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSSGI-------------DTEPFFSPDGRS-IYFTS--DR-------GGAPQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCCCC-------------CcCeEEcCCCCE-EEEEe--cC-------CCCcEEEE
Confidence 34899999988877777652110 235789999985 66652 11 11235777
Q ss_pred ccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeee
Q 007140 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (616)
Q Consensus 281 ~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~ 360 (616)
++. .+++.+.++........+.|||||+.+++.... .+..+|+++|+.++ +.+.++..... ..+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g--~~~~lt~~~~~--------~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATG--QVTALTDTTRD--------ESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCC--CeEEccCCCCc--------cCceE
Confidence 776 666666665333334568999999988776532 34458999999874 45555432211 12899
Q ss_pred CCCCCEEEEEeeec
Q 007140 361 TSTGTNVIAKIKKE 374 (616)
Q Consensus 361 s~dgk~l~~~~~~~ 374 (616)
+|||+.|++.....
T Consensus 379 spdg~~l~~~~~~~ 392 (427)
T PRK02889 379 APNGRYILYATQQG 392 (427)
T ss_pred CCCCCEEEEEEecC
Confidence 99999999887543
No 19
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.7e-17 Score=170.17 Aligned_cols=231 Identities=16% Similarity=0.175 Sum_probs=159.1
Q ss_pred CCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCC
Q 007140 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (616)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (616)
+++|||++..... .....+||++|.+++..++||..... +..+.|||||+.|+|+...
T Consensus 167 ~~~ia~v~~~~~~---~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~-------------- 224 (433)
T PRK04922 167 WTRIAYVTVSGAG---GAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFE-------------- 224 (433)
T ss_pred cceEEEEEEeCCC---CCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecC--------------
Confidence 5779998765211 13356899999988888999865432 5689999999999996311
Q ss_pred CeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCc
Q 007140 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYS 199 (616)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~ 199 (616)
+ ...+||++|+ +|+.++++... ....++|||||++|+|+.....
T Consensus 225 --------~------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 225 --------R------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred --------C------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 0 1357999999 56777776433 3457899999999998865432
Q ss_pred ccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeE
Q 007140 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (616)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (616)
..+||++|+.+++.+.++.... ....+.|+|||+. |++....+ ....+|
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~~-------------~~~~~~~spDG~~-l~f~sd~~---------g~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHFG-------------IDTEPTWAPDGKS-IYFTSDRG---------GRPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCCC-------------CccceEECCCCCE-EEEEECCC---------CCceEE
Confidence 2479999999888877765211 0235789999985 66652111 123677
Q ss_pred eccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCee
Q 007140 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (616)
Q Consensus 280 ~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~ 359 (616)
.++. .+++.+.++........+.|||||+.+++... +.+..+|++++++++ +.+.|+...... .+.
T Consensus 320 ~~dl---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g--~~~~Lt~~~~~~--------~p~ 385 (433)
T PRK04922 320 RVAA---SGGSAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTG--SVRTLTPGSLDE--------SPS 385 (433)
T ss_pred EEEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCC--CeEECCCCCCCC--------Cce
Confidence 7777 66777777644334457899999998877543 234458999999873 456665332111 279
Q ss_pred eCCCCCEEEEEeee
Q 007140 360 RTSTGTNVIAKIKK 373 (616)
Q Consensus 360 ~s~dgk~l~~~~~~ 373 (616)
|+|||+.|++....
T Consensus 386 ~spdG~~i~~~s~~ 399 (433)
T PRK04922 386 FAPNGSMVLYATRE 399 (433)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888754
No 20
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.1e-16 Score=169.33 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=160.8
Q ss_pred CCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCC
Q 007140 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (616)
Q Consensus 41 DG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 120 (616)
-.++|||++..... .+...+||++|.++++.++++..... +..+.|||||+.|+|+....
T Consensus 161 f~~~ia~v~~~~~~---~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~~------------ 220 (430)
T PRK00178 161 FSTRILYVTAERFS---VNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFEQ------------ 220 (430)
T ss_pred ceeeEEEEEeeCCC---CCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcCC------------
Confidence 45679998764211 13456899999998888888755432 46889999999999963210
Q ss_pred CCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCC
Q 007140 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPY 198 (616)
Q Consensus 121 g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~ 198 (616)
...+||++++ +|+.++|+... ....+.|||||++|+|......
T Consensus 221 ----------------------------------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 221 ----------------------------------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ----------------------------------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 1357999999 56888887543 3457899999999999865432
Q ss_pred cccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCcee
Q 007140 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (616)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~ 278 (616)
..+||++|+.+++.+.++..... ...+.|+|||+. |+|.... .....+
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~~~-------------~~~~~~spDg~~-i~f~s~~---------~g~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHPAI-------------DTEPFWGKDGRT-LYFTSDR---------GGKPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCCCC-------------cCCeEECCCCCE-EEEEECC---------CCCceE
Confidence 24899999998888877752211 235789999985 6665211 112367
Q ss_pred EeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCe
Q 007140 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (616)
Q Consensus 279 ~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~ 358 (616)
|.+++ .+++.+.++........+.|||||+.+++.... .+..+||++|+.++ +.+.|+...... .+
T Consensus 314 y~~d~---~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~tg--~~~~lt~~~~~~--------~p 379 (430)
T PRK00178 314 YKVNV---NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQRG--SVRILTDTSLDE--------SP 379 (430)
T ss_pred EEEEC---CCCCEEEeecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCCC--CEEEccCCCCCC--------Cc
Confidence 77777 667777776433344568999999988776532 24568999999884 456665332211 27
Q ss_pred eeCCCCCEEEEEeee
Q 007140 359 TRTSTGTNVIAKIKK 373 (616)
Q Consensus 359 ~~s~dgk~l~~~~~~ 373 (616)
.|+|||+.+++....
T Consensus 380 ~~spdg~~i~~~~~~ 394 (430)
T PRK00178 380 SVAPNGTMLIYATRQ 394 (430)
T ss_pred eECCCCCEEEEEEec
Confidence 899999999988753
No 21
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.4e-16 Score=170.46 Aligned_cols=241 Identities=17% Similarity=0.103 Sum_probs=149.4
Q ss_pred cEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeec
Q 007140 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (616)
Q Consensus 323 ~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~ 402 (616)
..++..+....+. .++.++...++- .. .+.++.+.++++|.+.........+| ++++
T Consensus 365 ~~hi~~~~~~~~~-~~~~lt~g~w~v-~~-----i~~~~~~~~~i~f~~~~~~~~~~~ly----------------~i~~ 421 (755)
T KOG2100|consen 365 YNHIAYLKLSNGS-EPRMLTSGNWEV-TS-----ILGYDKDSNRIYFDAYEEDPSERHLY----------------SISL 421 (755)
T ss_pred EEEEEEEEcCCCC-ccccccccceEE-EE-----eccccCCCceEEEEecCCCCCceEEE----------------EEEc
Confidence 5577777666531 344444333221 00 14455677888887764422233444 4556
Q ss_pred CCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCce-EEEEeCCCCc-eeeeeeCCCCCC---cc
Q 007140 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQ-YHILSWPLKK-SSQITNFPHPYP---TL 477 (616)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~-l~~~~~~~~~-~~~Lt~~~~~~~---~~ 477 (616)
.+.....++....+ ....... .+++...+.++...+.+..|-. +-+.+....+ ...|.... ... ..
T Consensus 422 ~~~~~~~lt~~~~~-~~~~~~~-------~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~-~~~~~~~~ 492 (755)
T KOG2100|consen 422 GSGTVESLTCSLIT-GPCTYLS-------VSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNE-ELKKTIEN 492 (755)
T ss_pred cccccccccccCCC-CcceEEE-------EecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccCh-hhHHHhhc
Confidence 55555555443321 0111111 2445555677777776665532 2222222211 23343321 211 11
Q ss_pred cCC-ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCe
Q 007140 478 ASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (616)
Q Consensus 478 ~~~-~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy 556 (616)
..+ ..+..+..- ||..++.++++|++|++.||| |++|++|+|+ ++|... ..| ... ++.+++.++||
T Consensus 493 ~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~ky--Pllv~~yGGP------~sq~v~--~~~-~~~-~~~~~~s~~g~ 559 (755)
T KOG2100|consen 493 VALPIVEFGKIEI-DGITANAILILPPNFDPSKKY--PLLVVVYGGP------GSQSVT--SKF-SVD-WNEVVVSSRGF 559 (755)
T ss_pred ccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCCC--CEEEEecCCC------Ccceee--eeE-Eec-HHHHhhccCCe
Confidence 112 455555554 999999999999999999988 7888886653 222221 122 112 55678999999
Q ss_pred EEEE-CCCCCccccCCCccC---ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 557 AVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 557 ~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
+|+. |+| ||+|+|.+|+. +++|..+++|++.+++++++.++||++||+|.+.
T Consensus 560 ~v~~vd~R-Gs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~Gw 615 (755)
T KOG2100|consen 560 AVLQVDGR-GSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGW 615 (755)
T ss_pred EEEEEcCC-CcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEecc
Confidence 9999 999 99999999986 9999999999999999999999999999999864
No 22
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.74 E-value=2.6e-16 Score=161.39 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=181.1
Q ss_pred ccceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCC
Q 007140 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (616)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (616)
+..++||.++.. ++.++|+.. ......+.|||||++|||+.. ++||+.+..+++.++||....
T Consensus 21 ~~~~y~i~d~~~----~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg~ 83 (353)
T PF00930_consen 21 FKGDYYIYDIET----GEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDGE 83 (353)
T ss_dssp EEEEEEEEETTT----TEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--T
T ss_pred cceeEEEEecCC----CceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEeccccc
Confidence 567899999975 888888732 346899999999999999973 699999999999999997752
Q ss_pred ccc-cc------------cccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCccc
Q 007140 83 ICL-NA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES 149 (616)
Q Consensus 83 ~~~-~~------------~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 149 (616)
..+ ++ ....+.|||||++|+|..-+++.... -........+...+ . . ..++++.-+
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~~yp-~-~-~~~~YPk~G- 152 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDSQYP-E-V-ESIRYPKAG- 152 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTESS--E-E-EEEE--BTT-
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccccCC-c-c-cccccCCCC-
Confidence 221 11 12478899999999997655443210 00000000000000 0 0 001111111
Q ss_pred ceeEeccceEEEEeC-CCCeeecCC------CC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE
Q 007140 150 LFDYYTTAQLVLGSL-DGTAKDFGT------PA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (616)
Q Consensus 150 ~~~~~~~~~l~~~d~-~g~~~~l~~------~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (616)
.+. ....|+++++ +++...+.. .+ ....+.|++|++.|++...++... ..++.++|..+++.
T Consensus 153 -~~n-p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 153 -DPN-PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTGET 222 (353)
T ss_dssp -S----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECTTTC
T ss_pred -CcC-CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCCCce
Confidence 111 4578999999 556544332 22 456899999999888877665421 22455555543332
Q ss_pred EEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccc
Q 007140 222 RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRF 301 (616)
Q Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~ 301 (616)
+.+.. + ....| + + ..
T Consensus 223 ~~~~~----e-------------~~~~W----------v---------------------~-----------------~~ 237 (353)
T PF00930_consen 223 RVVLE----E-------------TSDGW----------V---------------------D-----------------VY 237 (353)
T ss_dssp EEEEE----E-------------ESSSS----------S---------------------S-----------------SS
T ss_pred eEEEE----e-------------cCCcc----------e---------------------e-----------------ee
Confidence 22110 0 00000 0 0 11
Q ss_pred cceeec-CCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007140 302 RSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (616)
Q Consensus 302 ~~~~ws-pDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~ 380 (616)
..+.|. +++..++.... +++..+||.++.++ +.++.|+...++- . ..+.|+++++.|||.+...+....+
T Consensus 238 ~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V-~-----~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEV-T-----SILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-E-E-----EEEEEECTSSEEEEEESSGGTTSBE
T ss_pred cccccccCCCCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceee-c-----ccceEcCCCCEEEEEecCCCCCceE
Confidence 223343 67665554443 45788999999998 4467776554321 0 0277888888888888654323344
Q ss_pred EEEEecCCCCCCCcceeEeeecC-CCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCc
Q 007140 381 ILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (616)
Q Consensus 381 l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (616)
|| +++++ +++.++|+...+.. . ...||++++.++.++++++.||
T Consensus 309 lY----------------~v~~~~~~~~~~LT~~~~~~-----~-------~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 309 LY----------------RVSLDSGGEPKCLTCEDGDH-----Y-------SASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp EE----------------EEETTETTEEEESSTTSSTT-----E-------EEEE-TTSSEEEEEEESSSSCE
T ss_pred EE----------------EEEeCCCCCeEeccCCCCCc-----e-------EEEECCCCCEEEEEEcCCCCCC
Confidence 44 78888 88899998765331 1 2468999999999999999986
No 23
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=7.1e-15 Score=155.38 Aligned_cols=227 Identities=19% Similarity=0.200 Sum_probs=155.1
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..||+.+.. +++.++|+.... ....|.|||||++|||+... .+..+||++++++|+.++++.....
T Consensus 170 ~~l~~~d~~----g~~~~~l~~~~~--~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~~- 235 (417)
T TIGR02800 170 YELQVADYD----GANPQTITRSRE--PILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPGM- 235 (417)
T ss_pred ceEEEEcCC----CCCCEEeecCCC--ceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 457877763 367788874322 47789999999999998754 3457999999999988877654331
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|+|||+.|+|.... + ...+||++++
T Consensus 236 ----~~~~~~spDg~~l~~~~~~---------------------------------------~-------~~~~i~~~d~ 265 (417)
T TIGR02800 236 ----NGAPAFSPDGSKLAVSLSK---------------------------------------D-------GNPDIYVMDL 265 (417)
T ss_pred ----ccceEECCCCCEEEEEECC---------------------------------------C-------CCccEEEEEC
Confidence 3468999999999885210 0 1257899999
Q ss_pred -CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 -~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
+++.++|+... ....+.|||||++|+|.+.... ..+||++++.+++.+.++... .
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~~~-------------~ 322 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTFRG-------------G 322 (417)
T ss_pred CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------C
Confidence 55777776543 3346899999999999875432 237999999887766665311 0
Q ss_pred CCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCc
Q 007140 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (616)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (616)
....+.|+|||+. |++... +. ....+++++. .++..+.++.. .....+.|+|||..|++.... .+
T Consensus 323 ~~~~~~~spdg~~-i~~~~~-~~--------~~~~i~~~d~---~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~-~~ 387 (417)
T TIGR02800 323 YNASPSWSPDGDL-IAFVHR-EG--------GGFNIAVMDL---DGGGERVLTDT-GLDESPSFAPNGRMILYATTR-GG 387 (417)
T ss_pred CccCeEECCCCCE-EEEEEc-cC--------CceEEEEEeC---CCCCeEEccCC-CCCCCceECCCCCEEEEEEeC-CC
Confidence 1235789999984 555421 11 1235777776 55555555543 234568999999987766533 34
Q ss_pred cEEEEEEeCCC
Q 007140 323 QTRTWLVCPGS 333 (616)
Q Consensus 323 ~~~l~~~d~~~ 333 (616)
...|++++.++
T Consensus 388 ~~~l~~~~~~g 398 (417)
T TIGR02800 388 RGVLGLVSTDG 398 (417)
T ss_pred cEEEEEEECCC
Confidence 46888888776
No 24
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2e-14 Score=151.48 Aligned_cols=222 Identities=19% Similarity=0.165 Sum_probs=148.0
Q ss_pred CCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCC
Q 007140 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (616)
Q Consensus 42 G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g 121 (616)
+++|||++.+... ....+||++|.++...+.++..... +..+.|||||+.|+|+....
T Consensus 168 ~~ria~v~~~~~~----~~~~~i~i~d~dg~~~~~lt~~~~~-----v~~p~wSPDG~~la~~s~~~------------- 225 (429)
T PRK01742 168 RTRIAYVVQKNGG----SQPYEVRVADYDGFNQFIVNRSSQP-----LMSPAWSPDGSKLAYVSFEN------------- 225 (429)
T ss_pred CCEEEEEEEEcCC----CceEEEEEECCCCCCceEeccCCCc-----cccceEcCCCCEEEEEEecC-------------
Confidence 6899999875211 2247999999988888888765432 56899999999999963110
Q ss_pred CeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCC-CceeeeeECCCCcEEEEEeccCCCc
Q 007140 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (616)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (616)
...+||++|+ +|+.+++... .....++|||||++|++......
T Consensus 226 ---------------------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 226 ---------------------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------------------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 1357899999 5676666543 23457899999999999864332
Q ss_pred ccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeE
Q 007140 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (616)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~ 279 (616)
..+||++|+.+++.+.++.... ....+.|+|||+. |++....+ ....+|
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~~~~-------------~~~~~~wSpDG~~-i~f~s~~~---------g~~~I~ 319 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTSGAG-------------NNTEPSWSPDGQS-ILFTSDRS---------GSPQVY 319 (429)
T ss_pred --------cEEEEEEECCCCCeEeeccCCC-------------CcCCEEECCCCCE-EEEEECCC---------CCceEE
Confidence 2379999998888777765211 1235899999985 66652111 123566
Q ss_pred eccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCee
Q 007140 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (616)
Q Consensus 280 ~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~ 359 (616)
.++. .++..+.+. ... ..+.|||||+.+++... ..++++|+.++ +.+.++.. ... ..+.
T Consensus 320 ~~~~---~~~~~~~l~-~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g--~~~~lt~~-~~~-------~~~~ 378 (429)
T PRK01742 320 RMSA---SGGGASLVG-GRG--YSAQISADGKTLVMING-----DNVVKQDLTSG--STEVLSST-FLD-------ESPS 378 (429)
T ss_pred EEEC---CCCCeEEec-CCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCC--CeEEecCC-CCC-------CCce
Confidence 6665 554554442 222 35789999998776542 25888999873 44555422 111 1278
Q ss_pred eCCCCCEEEEEee
Q 007140 360 RTSTGTNVIAKIK 372 (616)
Q Consensus 360 ~s~dgk~l~~~~~ 372 (616)
|+|||+.|++...
T Consensus 379 ~sPdG~~i~~~s~ 391 (429)
T PRK01742 379 ISPNGIMIIYSST 391 (429)
T ss_pred ECCCCCEEEEEEc
Confidence 9999999988764
No 25
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.66 E-value=2.5e-13 Score=132.79 Aligned_cols=367 Identities=15% Similarity=0.185 Sum_probs=194.5
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEE-eeccccccCCCceeEEEEECCCCceEecccCCCc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~-~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (616)
++||.+.|++ |+.++||.--. -+.+|++||||++|||.+ .... +-...+||+++.++|++++||....
T Consensus 59 DdlWe~slk~----g~~~ritS~lG--Vvnn~kf~pdGrkvaf~rv~~~s----s~~taDly~v~~e~Ge~kRiTyfGr- 127 (668)
T COG4946 59 DDLWEYSLKD----GKPLRITSGLG--VVNNPKFSPDGRKVAFSRVMLGS----SLQTADLYVVPSEDGEAKRITYFGR- 127 (668)
T ss_pred hHHHHhhhcc----CCeeEEecccc--eeccccCCCCCcEEEEEEEEecC----CCccccEEEEeCCCCcEEEEEEecc-
Confidence 5789999987 99999994222 488999999999999943 2221 1345789999999999999998843
Q ss_pred ccccccc-ceEEecCCcEEEEEecCC----CCCC-------CCCcccCCCCeeeecC-ccccchhccccccccCCC----
Q 007140 84 CLNAVFG-SFVWVNNSTLLIFTIPSS----RRDP-------PKKTMVPLGPKIQSNE-QKNIIISRMTDNLLKDEY---- 146 (616)
Q Consensus 84 ~~~~~~~-~~~wspdg~~l~~~~~~~----~~~~-------~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~---- 146 (616)
. +. -..|+|||+.|+.+-... ...+ .+...++.||...... +|.....+...+ +++..
T Consensus 128 ~----fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntyd-LP~WK~YkG 202 (668)
T COG4946 128 R----FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYD-LPHWKGYKG 202 (668)
T ss_pred c----cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCccc-CcccccccC
Confidence 2 33 346999999888751110 0000 0111233333321111 111000011111 00000
Q ss_pred ------------------------cc--------c-ce--eEeccceEEEEeCCC-CeeecCCCC-ceeeeeECCCCcEE
Q 007140 147 ------------------------DE--------S-LF--DYYTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYV 189 (616)
Q Consensus 147 ------------------------d~--------~-~~--~~~~~~~l~~~d~~g-~~~~l~~~~-~~~~~~~SpDg~~i 189 (616)
+. + .| +.....+||.+|++| ..++.|+-. .+. =..+.||++|
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~-R~~nsDGkrI 281 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYP-RNANSDGKRI 281 (668)
T ss_pred CccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccc-cccCCCCcEE
Confidence 00 0 00 000234566666655 355555432 222 2457799999
Q ss_pred EEEeccCCCcccccCcccCccEEEEeCCCceEEEec-CCCCCC--CCCccccCccCCCCcceeecCCCc-----------
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAE--DIPVCYNSVREGMRSISWRADKPS----------- 255 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~--~~~~~~~~~~~~~~~~~wspdg~~----------- 255 (616)
+|.. ..+||++|-++...+.|. .+|+.. .++...+.+.. ...++.+ +|..
T Consensus 282 vFq~--------------~GdIylydP~td~lekldI~lpl~rk~k~~k~~~psky-ledfa~~-~Gd~ia~VSRGkaFi 345 (668)
T COG4946 282 VFQN--------------AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKY-LEDFAVV-NGDYIALVSRGKAFI 345 (668)
T ss_pred EEec--------------CCcEEEeCCCcCcceeeecCCccccccccccccCHHHh-hhhhccC-CCcEEEEEecCcEEE
Confidence 9985 347999998877666653 234321 11110000000 0001111 1111
Q ss_pred ---------------eEEEEEeecCCCcc-cccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeec
Q 007140 256 ---------------TLYWVEAQDRGDAN-VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (616)
Q Consensus 256 ---------------~l~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~ 319 (616)
.+.|.+.+..+... ......+.+-+++. .+++.+.+...-+.+..+..++||+.++...
T Consensus 346 ~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~---~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN-- 420 (668)
T COG4946 346 MRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK---DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN-- 420 (668)
T ss_pred ECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec---CCceEEEeeCCccceEEEEEcCCCcEEEEEc--
Confidence 01111111000000 11122345666676 6677777766667777889999999755432
Q ss_pred cCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEe
Q 007140 320 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDL 399 (616)
Q Consensus 320 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~ 399 (616)
.+..||++|+++ ++++.+- .+-..++.+ +.|+|+++.+++.-. .. .| + ..+..
T Consensus 421 --dr~el~vididn--gnv~~id-kS~~~lItd-----f~~~~nsr~iAYafP-----~g-y~-t----------q~Ikl 473 (668)
T COG4946 421 --DRFELWVIDIDN--GNVRLID-KSEYGLITD-----FDWHPNSRWIAYAFP-----EG-YY-T----------QSIKL 473 (668)
T ss_pred --CceEEEEEEecC--CCeeEec-ccccceeEE-----EEEcCCceeEEEecC-----cc-ee-e----------eeEEE
Confidence 234899999999 4566653 322223333 999999998877532 11 11 0 11334
Q ss_pred eecCCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecC
Q 007140 400 FDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESK 448 (616)
Q Consensus 400 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~ 448 (616)
+|+.+++.-.++.... ++. .++|.+|++.+.|.....
T Consensus 474 ydm~~~Kiy~vTT~ta---~Df---------sPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 474 YDMDGGKIYDVTTPTA---YDF---------SPAFDPDGRYLYFLSARS 510 (668)
T ss_pred EecCCCeEEEecCCcc---ccc---------CcccCCCCcEEEEEeccc
Confidence 6777777777654331 111 146778888777655433
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.65 E-value=1.2e-13 Score=145.93 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=157.9
Q ss_pred ccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccc
Q 007140 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (616)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 118 (616)
.+-+.+|+|++.... .+..+||+++.++++.++++..... ...+.|||||++|+|+...
T Consensus 152 ~~~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~----------- 210 (417)
T TIGR02800 152 GAFSTRIAYVSKSGK-----SRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFE----------- 210 (417)
T ss_pred CCcCCEEEEEEEeCC-----CCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcC-----------
Confidence 345788999986521 3567899999988888888755431 4578999999999996311
Q ss_pred CCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCC-CceeeeeECCCCcEEEEEeccC
Q 007140 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHR 196 (616)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~-~~~~~~~~SpDg~~i~~~~~~~ 196 (616)
+ ...+|+++|+ +|+.+.+... .....++|||||+.|+|.....
T Consensus 211 -----------~------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 211 -----------S------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred -----------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCC
Confidence 0 1257889999 5666666543 2344689999999999986432
Q ss_pred CCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCc
Q 007140 197 PYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRD 276 (616)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~ 276 (616)
. ..+||++++.+++.+.++..... ...+.|+|||+. |++.... ....
T Consensus 256 ~----------~~~i~~~d~~~~~~~~l~~~~~~-------------~~~~~~s~dg~~-l~~~s~~---------~g~~ 302 (417)
T TIGR02800 256 G----------NPDIYVMDLDGKQLTRLTNGPGI-------------DTEPSWSPDGKS-IAFTSDR---------GGSP 302 (417)
T ss_pred C----------CccEEEEECCCCCEEECCCCCCC-------------CCCEEECCCCCE-EEEEECC---------CCCc
Confidence 2 24799999998877777652110 124789999984 6555211 1123
Q ss_pred eeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCC
Q 007140 277 IIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSP 356 (616)
Q Consensus 277 ~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~ 356 (616)
.+|.++. .+++.+.++........+.|||||..+++.... .+..+|+++++++ +..+.+...... .
T Consensus 303 ~iy~~d~---~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~--~~~~~l~~~~~~--------~ 368 (417)
T TIGR02800 303 QIYMMDA---DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDG--GGERVLTDTGLD--------E 368 (417)
T ss_pred eEEEEEC---CCCCEEEeecCCCCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCC--CCeEEccCCCCC--------C
Confidence 6777787 666666666444455678999999987776532 3456899999987 344555432111 1
Q ss_pred CeeeCCCCCEEEEEeeec
Q 007140 357 MMTRTSTGTNVIAKIKKE 374 (616)
Q Consensus 357 ~~~~s~dgk~l~~~~~~~ 374 (616)
.+.|+|||+.|++.....
T Consensus 369 ~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRG 386 (417)
T ss_pred CceECCCCCEEEEEEeCC
Confidence 278999999998887643
No 27
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.62 E-value=8.1e-14 Score=143.71 Aligned_cols=218 Identities=18% Similarity=0.226 Sum_probs=147.9
Q ss_pred CceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007140 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (616)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~ 99 (616)
..+.++ ........|.|||||+.|+|+.-.. .+...+|++++++|+..++...... ...+.|||||+
T Consensus 184 ~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g~-----~~~P~fspDG~ 250 (425)
T COG0823 184 NQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNGN-----NGAPAFSPDGS 250 (425)
T ss_pred ceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCCc-----cCCccCCCCCC
Confidence 444444 3333577899999999999997541 2237899999999987777654332 45899999999
Q ss_pred EEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-CeeecCCCC-ce
Q 007140 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VY 177 (616)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~~l~~~~-~~ 177 (616)
.|+|.... + ...+||++|+.+ +.++|+... ..
T Consensus 251 ~l~f~~~r---------------------------------------d-------g~~~iy~~dl~~~~~~~Lt~~~gi~ 284 (425)
T COG0823 251 KLAFSSSR---------------------------------------D-------GSPDIYLMDLDGKNLPRLTNGFGIN 284 (425)
T ss_pred EEEEEECC---------------------------------------C-------CCccEEEEcCCCCcceecccCCccc
Confidence 99996311 0 246899999955 667788664 34
Q ss_pred eeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceE
Q 007140 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (616)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (616)
..+.|||||++|+|++.+.. ..+||+++++++..+.++.... +...+.|||||+. |
T Consensus 285 ~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~~~~-------------~~~~p~~SpdG~~-i 340 (425)
T COG0823 285 TSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTFSGG-------------GNSNPVWSPDGDK-I 340 (425)
T ss_pred cCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeeccCC-------------CCcCccCCCCCCE-E
Confidence 58999999999999987643 3489999999998888775211 1225889999995 6
Q ss_pred EEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 258 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
++.... ++. -.+...+. ..+...++.........+.|++||+.+++..... +...|+.+++++
T Consensus 341 ~~~~~~-~g~--------~~i~~~~~---~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~g 403 (425)
T COG0823 341 VFESSS-GGQ--------WDIDKNDL---ASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSLDG 403 (425)
T ss_pred EEEecc-CCc--------eeeEEecc---CCCCcEEEccccccCCCCCcCCCCceEEEeccCC-CCceEEEeeccc
Confidence 666421 221 12333333 2223233333344456789999999988876432 455788887765
No 28
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.60 E-value=1.8e-12 Score=128.13 Aligned_cols=343 Identities=11% Similarity=0.111 Sum_probs=165.1
Q ss_pred CCCCCCCCceeeecCCCCC---cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccc
Q 007140 13 LPDDSLGPEKEVHGYPDGA---KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (616)
Q Consensus 13 ~~~~~~g~~~~lt~~~~~~---~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~ 89 (616)
.|.+++-+.++||..+... ...+..|.+||++|.|.+++ ++..+||++|+++++.+|||..+... .
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~----~ 83 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN----T 83 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----T
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----c
Confidence 3334445777887443322 46789999999999998876 57899999999999999999765321 2
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCe
Q 007140 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA 168 (616)
Q Consensus 90 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~ 168 (616)
-+..+||+++.|+|... ..+|+.+|+ +.+.
T Consensus 84 ~g~~~s~~~~~~~Yv~~-------------------------------------------------~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 84 FGGFLSPDDRALYYVKN-------------------------------------------------GRSLRRVDLDTLEE 114 (386)
T ss_dssp TT-EE-TTSSEEEEEET-------------------------------------------------TTEEEEEETTT--E
T ss_pred cceEEecCCCeEEEEEC-------------------------------------------------CCeEEEEECCcCcE
Confidence 25678899998888521 136788888 5566
Q ss_pred eecCC-C-CceeeeeE--CCCCcEEEEEeccCCCccccc-Cc--------ccCccEEEEeCCCceEEEecCCCCCCCCCc
Q 007140 169 KDFGT-P-AVYTAVEP--SPDQKYVLITSMHRPYSYKVP-CA--------RFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (616)
Q Consensus 169 ~~l~~-~-~~~~~~~~--SpDg~~i~~~~~~~~~~~~~~-~~--------~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (616)
+.|.. + +......| ..|+..++.....+......+ |. +....|+.+|+.+++.+.+..-..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~------ 188 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD------ 188 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS------
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc------
Confidence 65532 2 23333445 456777766654432111111 11 235689999999888877654100
Q ss_pred cccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEecccc--ccccceeecCCCceE
Q 007140 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLAL 313 (616)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~--~~~~~~~wspDg~~l 313 (616)
+ ..-+.+||.-...|.|.. ++ .|. .....++.++. +++..+.+.... ...+.--|+|||..+
T Consensus 189 ---w----lgH~~fsP~dp~li~fCH--EG-pw~---~Vd~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 189 ---W----LGHVQFSPTDPTLIMFCH--EG-PWD---LVDQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp --------EEEEEEETTEEEEEEEEE---S--TT---TSS-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ---c----ccCcccCCCCCCEEEEec--cC-Ccc---eeceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCEE
Confidence 0 013677888776677752 21 111 11225677777 666666665332 334567799999988
Q ss_pred EEeeeccC-ccEEEEEEeCCCCCCCceEEeeccc-ccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCC
Q 007140 314 VNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVF-ENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 391 (616)
Q Consensus 314 ~~~~~~~~-~~~~l~~~d~~~~~~~~~~l~~~~~-~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~ 391 (616)
.+...... ...-|+.+++++. +.+.+..... .. +..++||+.++-...+. .. .. ...+...-
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~--~~~~~~~~p~~~H---------~~ss~Dg~L~vGDG~d~---p~-~v-~~~~~~~~ 316 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTG--ERRRLMEMPWCSH---------FMSSPDGKLFVGDGGDA---PV-DV-ADAGGYKI 316 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT----EEEEEEE-SEEE---------EEE-TTSSEEEEEE--------------------
T ss_pred EEEeecCCCCceEEEeeCCCCC--CceEEEeCCceee---------eEEcCCCCEEEecCCCC---Cc-cc-ccccccee
Confidence 77654222 2346788889884 4444432221 12 55678888654332110 00 10 01111222
Q ss_pred CCcceeEeeecCCCceeeeeecCCcccceeeEEeecC-----CCcccccccCCEEEEEeecCCCCceEEEEeCC
Q 007140 392 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVFG-----QGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (616)
Q Consensus 392 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~ 460 (616)
...++++.++++.+....|-.-. ....+.++ -+-++||||+++++|+.. ...++.||+++++
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~------~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHD------TSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP 383 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred cCCcEEEEeccccCceeeeeecc------CcceeecCCCccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence 35667878888877766653211 00000110 013689999999988654 5778999999875
No 29
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.58 E-value=2.5e-11 Score=125.62 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=120.2
Q ss_pred cCCEEEEEeecCCCCceEEEEeCCCCceeeeeeCCCCC-CcccCCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcE
Q 007140 437 NQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (616)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~-~~~~~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~ 515 (616)
+...+.+.++|.++|..++-+|+.+++.+.|-...-+. -+......+.|..++.||..|+--|++=.+++. +.+.|+
T Consensus 373 ~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~~--~g~~p~ 450 (682)
T COG1770 373 DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKL--DGSAPL 450 (682)
T ss_pred CCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccCC--CCCCcE
Confidence 56789999999999999999999999988875543222 223334888999999999999999998877543 356699
Q ss_pred EEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCccC-ChhH--HHHHHHHHHHHH
Q 007140 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLPN-DRFV--EQLVSSAEAAVE 591 (616)
Q Consensus 516 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~-~~~g--~~~~~D~~~~v~ 591 (616)
++|+|+.. | +.-+..|+. ..--|+.|||+--. =.| |..--|+.|-. +..- ..-++|.++|++
T Consensus 451 lLygYGaY-------G--~s~~p~Fs~----~~lSLlDRGfiyAIAHVR-GGgelG~~WYe~GK~l~K~NTf~DFIa~a~ 516 (682)
T COG1770 451 LLYGYGAY-------G--ISMDPSFSI----ARLSLLDRGFVYAIAHVR-GGGELGRAWYEDGKLLNKKNTFTDFIAAAR 516 (682)
T ss_pred EEEEeccc-------c--ccCCcCccc----ceeeeecCceEEEEEEee-cccccChHHHHhhhhhhccccHHHHHHHHH
Confidence 99999741 1 222235532 12349999988888 899 97778888875 3332 347899999999
Q ss_pred HHHHcCCccCCceEEEee
Q 007140 592 EVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 592 ~l~~~~~vD~~ri~~~~~ 609 (616)
+|+++|+.+++||++.+.
T Consensus 517 ~Lv~~g~~~~~~i~a~GG 534 (682)
T COG1770 517 HLVKEGYTSPDRIVAIGG 534 (682)
T ss_pred HHHHcCcCCccceEEecc
Confidence 999999999999999875
No 30
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.57 E-value=1.1e-13 Score=142.64 Aligned_cols=167 Identities=18% Similarity=0.201 Sum_probs=122.9
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..||+.++.. |+..++..+.. ....|+|||||++|+|...+ ++..+||++|+.++..++||.....
T Consensus 218 ~~i~~~~l~~----g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~r-------dg~~~iy~~dl~~~~~~~Lt~~~gi- 283 (425)
T COG0823 218 PRIYYLDLNT----GKRPVILNFNG--NNGAPAFSPDGSKLAFSSSR-------DGSPDIYLMDLDGKNLPRLTNGFGI- 283 (425)
T ss_pred ceEEEEeccC----CccceeeccCC--ccCCccCCCCCCEEEEEECC-------CCCccEEEEcCCCCcceecccCCcc-
Confidence 5689999875 77667664444 47899999999999999987 6789999999999988888766543
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|||||+.|+|++.. + ...+||++++
T Consensus 284 ----~~~Ps~spdG~~ivf~Sdr----------------------~------------------------G~p~I~~~~~ 313 (425)
T COG0823 284 ----NTSPSWSPDGSKIVFTSDR----------------------G------------------------GRPQIYLYDL 313 (425)
T ss_pred ----ccCccCCCCCCEEEEEeCC----------------------C------------------------CCcceEEECC
Confidence 3489999999999997321 1 2358999999
Q ss_pred CC-CeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce-EEEecCCCCCCCCCccccCcc
Q 007140 165 DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVR 241 (616)
Q Consensus 165 ~g-~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~ 241 (616)
+| ++++++... ....+.|||||++|+|...... ..++.+.++.++. .+.++.-.
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g----------~~~i~~~~~~~~~~~~~lt~~~------------- 370 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG----------QWDIDKNDLASGGKIRILTSTY------------- 370 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC----------ceeeEEeccCCCCcEEEccccc-------------
Confidence 76 677777543 3447899999999999973321 1357777876554 55555421
Q ss_pred CCCCcceeecCCCceEEEE
Q 007140 242 EGMRSISWRADKPSTLYWV 260 (616)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~ 260 (616)
....+.|+++|+. +.|.
T Consensus 371 -~~e~ps~~~ng~~-i~~~ 387 (425)
T COG0823 371 -LNESPSWAPNGRM-IMFS 387 (425)
T ss_pred -cCCCCCcCCCCce-EEEe
Confidence 1235789999985 4444
No 31
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.53 E-value=1e-11 Score=127.38 Aligned_cols=292 Identities=19% Similarity=0.225 Sum_probs=163.2
Q ss_pred ccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCccc
Q 007140 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (616)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 118 (616)
||||++++|..+..+.= -.+....+|++|+++++.++++.... ....+.|||||+.|+|+..
T Consensus 1 S~d~~~~l~~~~~~~~~-r~s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQW-RHSFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEES-SSEEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEee-eeccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 89999999977652110 01345789999999999999975521 2578999999999999732
Q ss_pred CCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCCC-------------------cee
Q 007140 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (616)
Q Consensus 119 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~~-------------------~~~ 178 (616)
..||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 24555555 34555554321 124
Q ss_pred eeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-e----EEEecCCCCCCCCCccccCccCCCCcceeecCC
Q 007140 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-L----VRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (616)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (616)
.+.|||||++|+|...+... ...+.+.+.... . ...+ .+|.. |...
T Consensus 105 ~~~WSpd~~~la~~~~d~~~---------v~~~~~~~~~~~~~~yp~~~~~-~YPk~------------G~~n------- 155 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDERE---------VPEYPLPDYSPPDSQYPEVESI-RYPKA------------GDPN------- 155 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-TT---------S-EEEEEEESSSTESS-EEEEE-E--BT------------TS---------
T ss_pred ceEECCCCCEEEEEEECCcC---------CceEEeeccCCccccCCccccc-ccCCC------------CCcC-------
Confidence 67899999999999876421 123333332211 1 1111 11110 0000
Q ss_pred CceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEec------cccccccceeecCCCce-EEEeeeccCccEEE
Q 007140 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH------KLDLRFRSVSWCDDSLA-LVNETWYKTSQTRT 326 (616)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~------~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l 326 (616)
..-.++++++ ++++...+. ..+.....+.|++|+.. ++....+......|
T Consensus 156 --------------------p~v~l~v~~~---~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 156 --------------------PRVSLFVVDL---ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp ---------------------EEEEEEEES---SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred --------------------CceEEEEEEC---CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 1112333344 444443322 22334567999999884 33333455567789
Q ss_pred EEEeCCCCCCCceEEeecccccccCCCCCCCeeeC-CCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeecCCC
Q 007140 327 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRT-STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (616)
Q Consensus 327 ~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s-~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (616)
..+|+.++ ..+.+.......-+ ... ..+.+. +++..+++...+.| -.+|| .++.+++
T Consensus 213 ~~~d~~tg--~~~~~~~e~~~~Wv-~~~-~~~~~~~~~~~~~l~~s~~~G--~~hly----------------~~~~~~~ 270 (353)
T PF00930_consen 213 VLCDASTG--ETRVVLEETSDGWV-DVY-DPPHFLGPDGNEFLWISERDG--YRHLY----------------LYDLDGG 270 (353)
T ss_dssp EEEEECTT--TCEEEEEEESSSSS-SSS-SEEEE-TTTSSEEEEEEETTS--SEEEE----------------EEETTSS
T ss_pred EEEECCCC--ceeEEEEecCCcce-eee-cccccccCCCCEEEEEEEcCC--CcEEE----------------EEccccc
Confidence 99999873 44555322111111 111 114443 77877777766332 44555 5677777
Q ss_pred ceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCC-CCceEEEEeCC-CCceeeeeeCC
Q 007140 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWP-LKKSSQITNFP 471 (616)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~-~p~~l~~~~~~-~~~~~~Lt~~~ 471 (616)
..+.|+...- +. ..+ ..++.+++.++|+....+ .-.+||.++++ +++.++||...
T Consensus 271 ~~~~lT~G~~----~V-~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 271 KPRQLTSGDW----EV-TSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp EEEESS-SSS-----E-EEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred ceeccccCce----ee-ccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 7777775542 11 111 235667788888877533 45679999999 88899998763
No 32
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.31 E-value=7.5e-10 Score=109.71 Aligned_cols=300 Identities=16% Similarity=0.148 Sum_probs=146.4
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCc
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (616)
-.+||+++|.. ++++|||..+.. ......+||+++.|.|+.+ ..+|+.+++++.+.+.|...++.
T Consensus 59 ~~nly~lDL~t----~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~ 123 (386)
T PF14583_consen 59 NRNLYLLDLAT----GEITQLTDGPGD-NTFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDD 123 (386)
T ss_dssp S-EEEEEETTT-----EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TT
T ss_pred CcceEEEEccc----CEEEECccCCCC-CccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCcc
Confidence 35899999976 999999965543 3447899999999999763 35899999999999999877764
Q ss_pred cccccccceEEe--cCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEE
Q 007140 84 CLNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (616)
Q Consensus 84 ~~~~~~~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (616)
. .+.-.|+ .|++.++....... + .+..+ .+.. ..+ .+......+|+.
T Consensus 124 ~----~g~gt~v~n~d~t~~~g~e~~~~------------------d-~~~l~--~~~~-----f~e-~~~a~p~~~i~~ 172 (386)
T PF14583_consen 124 W----KGYGTWVANSDCTKLVGIEISRE------------------D-WKPLT--KWKG-----FRE-FYEARPHCRIFT 172 (386)
T ss_dssp E----EEEEEEEE-TTSSEEEEEEEEGG------------------G--------SHHH-----HHH-HHHC---EEEEE
T ss_pred c----ccccceeeCCCccEEEEEEEeeh------------------h-ccCcc--ccHH-----HHH-HHhhCCCceEEE
Confidence 3 3345776 45666655421100 0 00000 0000 000 011113578999
Q ss_pred EeC-CCCeeecCCC-CceeeeeECCC-CcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCcccc
Q 007140 162 GSL-DGTAKDFGTP-AVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (616)
Q Consensus 162 ~d~-~g~~~~l~~~-~~~~~~~~SpD-g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (616)
+|+ +|+.+.|... ....-+.+||. ...|.|.. +.|+. ....+||+++.+|+..+++......+.
T Consensus 173 idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH-EGpw~------~Vd~RiW~i~~dg~~~~~v~~~~~~e~------ 239 (386)
T PF14583_consen 173 IDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH-EGPWD------LVDQRIWTINTDGSNVKKVHRRMEGES------ 239 (386)
T ss_dssp EETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE--S-TT------TSS-SEEEEETTS---EESS---TTEE------
T ss_pred EECCCCceeEEEecCccccCcccCCCCCCEEEEec-cCCcc------eeceEEEEEEcCCCcceeeecCCCCcc------
Confidence 999 7888776543 34456788885 56666763 44532 124589999999998888765221110
Q ss_pred CccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeee
Q 007140 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (616)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (616)
..--.|+|||+. |+|.....++.. -.+..++. .+++.+.+...+ ....+.-++||+.++.+..
T Consensus 240 -----~gHEfw~~DG~~-i~y~~~~~~~~~-------~~i~~~d~---~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 240 -----VGHEFWVPDGST-IWYDSYTPGGQD-------FWIAGYDP---DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp -----EEEEEE-TTSS--EEEEEEETTT---------EEEEEE-T---TT--EEEEEEE--SEEEEEE-TTSSEEEEEE-
T ss_pred -----cccccccCCCCE-EEEEeecCCCCc-------eEEEeeCC---CCCCceEEEeCC-ceeeeEEcCCCCEEEecCC
Confidence 112569999984 766643322211 12333344 444555443332 2334555789998776532
Q ss_pred cc------------CccEEEEEEeCCCCCCCceEEeeccccccc----CCCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007140 319 YK------------TSQTRTWLVCPGSKDVAPRVLFDRVFENVY----SDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (616)
Q Consensus 319 ~~------------~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~----~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~ 382 (616)
.. ....-||++++..+ ....|......... .....+-+++|||||.|+|.+...| ...||
T Consensus 303 d~p~~v~~~~~~~~~~~p~i~~~~~~~~--~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G--~~~vY 378 (386)
T PF14583_consen 303 DAPVDVADAGGYKIENDPWIYLFDVEAG--RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG--PPAVY 378 (386)
T ss_dssp ------------------EEEEEETTTT--EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS--S-EEE
T ss_pred CCCccccccccceecCCcEEEEeccccC--ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC--CccEE
Confidence 10 01236777888763 33444322211110 1123356999999999999987654 33466
Q ss_pred E
Q 007140 383 L 383 (616)
Q Consensus 383 ~ 383 (616)
+
T Consensus 379 ~ 379 (386)
T PF14583_consen 379 L 379 (386)
T ss_dssp E
T ss_pred E
Confidence 4
No 33
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.15 E-value=2.8e-10 Score=116.42 Aligned_cols=155 Identities=16% Similarity=0.099 Sum_probs=122.9
Q ss_pred cccCCEEEEEeecCCCCceEEEEeCCCCceeeeeeCCCCCCcccCCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCc
Q 007140 435 NLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLP 514 (616)
Q Consensus 435 s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P 514 (616)
+.++..+.+..++...|+.+|+.++.+++++.+.... ...+......|....++.||+.|+-.++. ++.+.+ +.|
T Consensus 348 ~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p-~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~p 422 (648)
T COG1505 348 DKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQP-VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENP 422 (648)
T ss_pred CCCCcEEEEEeecccCCCceEEEecCCceehhhhhcc-CCcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCc
Confidence 3366788899999999999999999988888876653 22333456888889999999999999998 776654 459
Q ss_pred EEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCccC---ChhHHHHHHHHHHHH
Q 007140 515 CLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAV 590 (616)
Q Consensus 515 ~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~~~v 590 (616)
+++|.|+|+- ++-. .+|. ...-+|..+|.+-++ |.| |..-||.+|++ +.=.+..++|..+++
T Consensus 423 Tll~aYGGF~--------vslt-P~fs----~~~~~WLerGg~~v~ANIR-GGGEfGp~WH~Aa~k~nrq~vfdDf~AVa 488 (648)
T COG1505 423 TLLYAYGGFN--------ISLT-PRFS----GSRKLWLERGGVFVLANIR-GGGEFGPEWHQAGMKENKQNVFDDFIAVA 488 (648)
T ss_pred eEEEeccccc--------cccC-Cccc----hhhHHHHhcCCeEEEEecc-cCCccCHHHHHHHhhhcchhhhHHHHHHH
Confidence 9999998762 1212 2442 223789999998888 999 98889999986 222456899999999
Q ss_pred HHHHHcCCccCCceEEEe
Q 007140 591 EEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 591 ~~l~~~~~vD~~ri~~~~ 608 (616)
+.|+++|+.-|++|||-+
T Consensus 489 edLi~rgitspe~lgi~G 506 (648)
T COG1505 489 EDLIKRGITSPEKLGIQG 506 (648)
T ss_pred HHHHHhCCCCHHHhhhcc
Confidence 999999999999999854
No 34
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.13 E-value=2.4e-11 Score=115.61 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=57.8
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccC---ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
+..|+||++||+|+. ||| ||.|||.+|.. ++||..+++|+++++++|++++.||++||+|.+.
T Consensus 5 ~~~~~la~~Gy~v~~~~~r-Gs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~ 71 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYR-GSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGH 71 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-T-TSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHHHHhCCEEEEEEcCC-CCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcc
Confidence 678999999999999 999 99999999986 8999999999999999999999999999999874
No 35
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.11 E-value=2.9e-07 Score=92.30 Aligned_cols=244 Identities=14% Similarity=0.050 Sum_probs=131.7
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (616)
.|++.++.. ++..... ........+.|+|||+.++.+.. ....|+++++.+++..........
T Consensus 12 ~v~~~d~~t----~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~~---------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 12 TISVIDTAT----LEVTRTF--PVGQRPRGITLSKDGKLLYVCAS---------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred EEEEEECCC----CceEEEE--ECCCCCCceEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 356666543 5543333 22223567999999997655542 246789999998876543222111
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-
Q 007140 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (616)
Q Consensus 86 ~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~- 164 (616)
...+.|+||++.|+.... ....|.++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~~------------------------------------------------~~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANE------------------------------------------------DDNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcC------------------------------------------------CCCeEEEEECC
Confidence 346789999997755411 0134666677
Q ss_pred CCC-eeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCC
Q 007140 165 DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (616)
Q Consensus 165 ~g~-~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (616)
+++ ...+........++|+|||+.+++..... ..+..+|..+++....... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~------------~~~~~~d~~~~~~~~~~~~-------------~~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETT------------NMAHFIDTKTYEIVDNVLV-------------DQR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecCC------------CeEEEEeCCCCeEEEEEEc-------------CCC
Confidence 332 22332222235789999999988875432 1355667765543221110 001
Q ss_pred CCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCc-eEeccc-------cccccceeecCCCceEEE
Q 007140 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-------DLRFRSVSWCDDSLALVN 315 (616)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~-------~~~~~~~~wspDg~~l~~ 315 (616)
...+.|+|||+. |+.. . .....+++++. .+++. +.+.-. ......+.|+||+..++.
T Consensus 159 ~~~~~~s~dg~~-l~~~-~----------~~~~~v~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 159 PRFAEFTADGKE-LWVS-S----------EIGGTVSVIDV---ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ccEEEECCCCCE-EEEE-c----------CCCCEEEEEEc---CcceeeeeeeecccccccccCCccceEECCCCCEEEE
Confidence 234789999873 3322 1 11234666666 43332 222210 111234779999986433
Q ss_pred eeeccCccEEEEEEeCCCCCCCceE-Ee-ecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 316 ETWYKTSQTRTWLVCPGSKDVAPRV-LF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 316 ~~~~~~~~~~l~~~d~~~~~~~~~~-l~-~~~~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
.... ..++.++|+.+. +... +. ...+. .+.|+|+|+.|+...
T Consensus 224 ~~~~---~~~i~v~d~~~~--~~~~~~~~~~~~~---------~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 224 ALGP---ANRVAVVDAKTY--EVLDYLLVGQRVW---------QLAFTPDEKYLLTTN 267 (300)
T ss_pred EcCC---CCeEEEEECCCC--cEEEEEEeCCCcc---------eEEECCCCCEEEEEc
Confidence 2211 126888888763 3222 11 11111 288999999887654
No 36
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=1.5e-07 Score=93.01 Aligned_cols=285 Identities=9% Similarity=0.052 Sum_probs=165.9
Q ss_pred ceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007140 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (616)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~ 100 (616)
-+.+-+++.+ ++.|.+- |.+|.|++.. ++..+||..|+++...|+-|+..+-. . -.-+.||++
T Consensus 218 FeK~vdl~~~--vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtdYY-~-----R~~nsDGkr 280 (668)
T COG4946 218 FEKFVDLDGN--VSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTDYY-P-----RNANSDGKR 280 (668)
T ss_pred eeeeeecCCC--cCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchhcc-c-----cccCCCCcE
Confidence 3444446664 7777775 8899999976 67899999999998888888765421 1 112347787
Q ss_pred EEEEecCCC----CCCCCCcccCCC-CeeeecCccc-cchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCC
Q 007140 101 LIFTIPSSR----RDPPKKTMVPLG-PKIQSNEQKN-IIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT 173 (616)
Q Consensus 101 l~~~~~~~~----~~~~~~~~~~~g-~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~ 173 (616)
|+|....+. +.......+.-+ +..+.....+ ..+.+-..+.. ..+....+...+.+.|+++. .|-..++..
T Consensus 281 IvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa--~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 281 IVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFA--VVNGDYIALVSRGKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred EEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhc--cCCCcEEEEEecCcEEEECCCCCeeEEcCC
Confidence 777522110 000000011111 0000000000 00001011111 12233444456788999998 567778887
Q ss_pred CCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCC
Q 007140 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (616)
Q Consensus 174 ~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (616)
...+.-..++-|++.++....+. ..|.++|..+++++.+... + .....+.-+|||
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dg------------D~l~iyd~~~~e~kr~e~~-----l--------g~I~av~vs~dG 413 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDG------------DKLGIYDKDGGEVKRIEKD-----L--------GNIEAVKVSPDG 413 (668)
T ss_pred CCceEEEEEccCCcceEEeccCC------------ceEEEEecCCceEEEeeCC-----c--------cceEEEEEcCCC
Confidence 76555556666777666665442 2688999999987776431 0 012356789999
Q ss_pred CceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEecccc-ccccceeecCCCceEEEeeeccCccEEEEEEeCC
Q 007140 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (616)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (616)
+. ++.. +.+-+++++++ +.|.++.+.... +-...+.|+|+++.+++.--..--.++|.++|.+
T Consensus 414 K~-~vva------------Ndr~el~vidi---dngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 414 KK-VVVA------------NDRFELWVIDI---DNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred cE-EEEE------------cCceEEEEEEe---cCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 84 3222 34557888888 777887776544 4467899999999877642110112367778887
Q ss_pred CCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeec
Q 007140 333 SKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKE 374 (616)
Q Consensus 333 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~ 374 (616)
++ +.-.++.....+ ..+++.|||++||+++.+.
T Consensus 478 ~~--Kiy~vTT~ta~D-------fsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 478 GG--KIYDVTTPTAYD-------FSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred CC--eEEEecCCcccc-------cCcccCCCCcEEEEEeccc
Confidence 73 333333222111 2388999999999998653
No 37
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.6e-09 Score=109.94 Aligned_cols=157 Identities=16% Similarity=0.090 Sum_probs=118.3
Q ss_pred cCCEEEEEeecCCCCceEEEEeCCCCcee--eee--eCCCCCCcccCCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCC
Q 007140 437 NQLKILTSKESKTEITQYHILSWPLKKSS--QIT--NFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (616)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~--~Lt--~~~~~~~~~~~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p 512 (616)
+...+-|..+|+-.|+.||-+|+..++++ .+. ..+.+..+......+.+.+++.||..|+=.+++=.+.+.. .+
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~d--g~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLD--GS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhhhc--CC
Confidence 34678899999999999999999988532 222 2223444444458999999999999999888885444322 24
Q ss_pred CcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCccC-ChhH--HHHHHHHHH
Q 007140 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLPN-DRFV--EQLVSSAEA 588 (616)
Q Consensus 513 ~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~-~~~g--~~~~~D~~~ 588 (616)
-|.++|+|++.-- +.. ..| . .+.-.|..+|++... |.| |..+||..|.+ |... ...++|.++
T Consensus 470 ~P~LLygYGay~i-------sl~--p~f---~-~srl~lld~G~Vla~a~VR-GGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 470 KPLLLYGYGAYGI-------SLD--PSF---R-ASRLSLLDRGWVLAYANVR-GGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred CceEEEEecccce-------eec--ccc---c-cceeEEEecceEEEEEeec-cCcccccchhhccchhhhcccHHHHHH
Confidence 4999999875311 100 233 2 444568889999999 999 99999999997 5554 347899999
Q ss_pred HHHHHHHcCCccCCceEEEee
Q 007140 589 AVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 589 ~v~~l~~~~~vD~~ri~~~~~ 609 (616)
|+++|+++||+-|+|+++++-
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~ 556 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGG 556 (712)
T ss_pred HHHHHHHcCCCCccceeEecc
Confidence 999999999999999999863
No 38
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.97 E-value=3.9e-06 Score=83.98 Aligned_cols=270 Identities=11% Similarity=0.039 Sum_probs=141.4
Q ss_pred ceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccc
Q 007140 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (616)
Q Consensus 61 ~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 140 (616)
...|+++++++++.......... ...+.|+|||+.++....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~~---------------------------------- 50 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCAS---------------------------------- 50 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEEC----------------------------------
Confidence 46889999988876555433221 456899999997655411
Q ss_pred cccCCCcccceeEeccceEEEEeC-CCCee-ecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCC
Q 007140 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (616)
Q Consensus 141 ~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~-~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (616)
....|+++|+ +++.. .+........+.|+|||+.+++.... ...+.++|+.+
T Consensus 51 --------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 51 --------------DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred --------------CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 0134666777 45433 33332233468999999988766422 23688999876
Q ss_pred ceE-EEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccc
Q 007140 219 KLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (616)
Q Consensus 219 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~ 297 (616)
.+. ..+.. . .....+.|+|||+. ++.. ..+ ...++.++. .+++.......
T Consensus 105 ~~~~~~~~~---~-----------~~~~~~~~~~dg~~-l~~~-~~~----------~~~~~~~d~---~~~~~~~~~~~ 155 (300)
T TIGR03866 105 RKVLAEIPV---G-----------VEPEGMAVSPDGKI-VVNT-SET----------TNMAHFIDT---KTYEIVDNVLV 155 (300)
T ss_pred CeEEeEeeC---C-----------CCcceEEECCCCCE-EEEE-ecC----------CCeEEEEeC---CCCeEEEEEEc
Confidence 532 22211 0 01235789999973 3222 111 122333354 32332221112
Q ss_pred cccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCC-CCCeeeCCCCCEEEEEeeecCC
Q 007140 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPG-SPMMTRTSTGTNVIAKIKKEND 376 (616)
Q Consensus 298 ~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g-~~~~~~s~dgk~l~~~~~~~~~ 376 (616)
......+.|+|||..|+.....+ + .++++|+.+++ ..+.+. ......-.... ...+.+++||+.+++.....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~-~--~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-- 228 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIG-G--TVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-- 228 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCC-C--EEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCCC--
Confidence 22345678999998765443211 2 68888887731 112221 11000000000 01267899999876654211
Q ss_pred cccEEEEEecCCCCCCCcceeEeeecCCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEE
Q 007140 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (616)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~ 456 (616)
..+. .+|+++++........ ..+. ...|+++++.++... ..-..|.+
T Consensus 229 --~~i~----------------v~d~~~~~~~~~~~~~-----~~~~-------~~~~~~~g~~l~~~~---~~~~~i~v 275 (300)
T TIGR03866 229 --NRVA----------------VVDAKTYEVLDYLLVG-----QRVW-------QLAFTPDEKYLLTTN---GVSNDVSV 275 (300)
T ss_pred --CeEE----------------EEECCCCcEEEEEEeC-----CCcc-------eEEECCCCCEEEEEc---CCCCeEEE
Confidence 1222 3567666544332111 0111 135788888765432 22356999
Q ss_pred EeCCCCce
Q 007140 457 LSWPLKKS 464 (616)
Q Consensus 457 ~~~~~~~~ 464 (616)
+|+.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99887764
No 39
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=3.8e-07 Score=93.37 Aligned_cols=291 Identities=15% Similarity=0.177 Sum_probs=144.1
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
.+||..++ |.++|+...+.........+.+.+||++++|..+..... ..+.-..|.++.++|+...+.......
T Consensus 13 ~gI~~~~~--d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 13 GGIYVFRF--DEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp TEEEEEEE--ETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CcEEEEEE--cCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCC
Confidence 57899998 346787777765444446788899999987555543210 133445555555557766654332111
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
.....+..+||++.|+..--. ...+.++++
T Consensus 87 --~~p~~i~~~~~g~~l~vany~------------------------------------------------~g~v~v~~l 116 (345)
T PF10282_consen 87 --SSPCHIAVDPDGRFLYVANYG------------------------------------------------GGSVSVFPL 116 (345)
T ss_dssp --SCEEEEEECTTSSEEEEEETT------------------------------------------------TTEEEEEEE
T ss_pred --CCcEEEEEecCCCEEEEEEcc------------------------------------------------CCeEEEEEc
Confidence 112346677899987774110 112222322
Q ss_pred --CCCeeec---C------------CCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce--EEEec
Q 007140 165 --DGTAKDF---G------------TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL--VRELC 225 (616)
Q Consensus 165 --~g~~~~l---~------------~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~ 225 (616)
+|.+... . .......+.++|||++|++.... ...|++++++... .....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG------------~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG------------ADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT------------TTEEEEEEE-TTS-TEEEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC------------CCEEEEEEEeCCCceEEEee
Confidence 2211110 0 11234578999999999887543 2367888775432 32221
Q ss_pred CCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEec---cc--cc-
Q 007140 226 DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KL--DL- 299 (616)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~---~~--~~- 299 (616)
.... | ...|.+.+.++|||+. +|.+. +..+.+.+++.++ ..|..+.+. .. ..
T Consensus 185 ~~~~----~-----~G~GPRh~~f~pdg~~-~Yv~~-----------e~s~~v~v~~~~~-~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 185 SIKV----P-----PGSGPRHLAFSPDGKY-AYVVN-----------ELSNTVSVFDYDP-SDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEC----S-----TTSSEEEEEE-TTSSE-EEEEE-----------TTTTEEEEEEEET-TTTEEEEEEEEESCETTSC
T ss_pred cccc----c-----cCCCCcEEEEcCCcCE-EEEec-----------CCCCcEEEEeecc-cCCceeEEEEeeecccccc
Confidence 1100 0 1234567899999983 44432 1223333333300 123322211 11 11
Q ss_pred ---cccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCC
Q 007140 300 ---RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND 376 (616)
Q Consensus 300 ---~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~ 376 (616)
....+..||||+.|+..... .. .|.+++++...+..+.+-....... .| ..+.++|+|++|++.....
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~-~~--sI~vf~~d~~~g~l~~~~~~~~~G~--~P--r~~~~s~~g~~l~Va~~~s-- 313 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRG-SN--SISVFDLDPATGTLTLVQTVPTGGK--FP--RHFAFSPDGRYLYVANQDS-- 313 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECT-TT--EEEEEEECTTTTTEEEEEEEEESSS--SE--EEEEE-TTSSEEEEEETTT--
T ss_pred ccCCceeEEEecCCCEEEEEecc-CC--EEEEEEEecCCCceEEEEEEeCCCC--Cc--cEEEEeCCCCEEEEEecCC--
Confidence 23457889999976554322 22 5655655332134443311111000 00 0278899999998876432
Q ss_pred cccEEEEEecCCCCCCCcceeEeeecCCCceeee
Q 007140 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERI 410 (616)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l 410 (616)
....+ +++|.++|..+.+
T Consensus 314 ~~v~v----------------f~~d~~tG~l~~~ 331 (345)
T PF10282_consen 314 NTVSV----------------FDIDPDTGKLTPV 331 (345)
T ss_dssp TEEEE----------------EEEETTTTEEEEE
T ss_pred CeEEE----------------EEEeCCCCcEEEe
Confidence 12223 3578778876655
No 40
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.86 E-value=5.5e-06 Score=84.54 Aligned_cols=85 Identities=18% Similarity=0.107 Sum_probs=48.5
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECC-CCceEecccCCCc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDI 83 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~-~g~~~~lt~~~~~ 83 (616)
..|++.++.. +|+.+.+..++.........+||||++|+.... ....|.+++++ .|+...+.....
T Consensus 12 ~~I~~~~~~~---~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~- 78 (330)
T PRK11028 12 QQIHVWNLNH---EGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPL- 78 (330)
T ss_pred CCEEEEEECC---CCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecC-
Confidence 3467777732 355555544443335678899999998755432 23456556664 455433321111
Q ss_pred cccccccceEEecCCcEEEEE
Q 007140 84 CLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~ 104 (616)
......+.++|||+.|+..
T Consensus 79 --~~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 79 --PGSPTHISTDHQGRFLFSA 97 (330)
T ss_pred --CCCceEEEECCCCCEEEEE
Confidence 1114568899999987664
No 41
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.85 E-value=1.5e-07 Score=87.39 Aligned_cols=147 Identities=14% Similarity=0.269 Sum_probs=90.7
Q ss_pred ccceEEccCCCeEEEEEeec--cccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007140 33 INFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~--~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (616)
.....|+|+|+.|++...++ +...-..+..+||.++..+.....+.-..++. +..++|+|+|+.++++.-.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~----I~~~~WsP~g~~favi~g~--- 80 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGP----IHDVAWSPNGNEFAVIYGS--- 80 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCc----eEEEEECcCCCEEEEEEcc---
Confidence 55789999999999998842 11111234678999988776555553222222 6789999999998775210
Q ss_pred CCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-CeeecCCCCceeeeeECCCCcEE
Q 007140 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYV 189 (616)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~~l~~~~~~~~~~~SpDg~~i 189 (616)
....+.++|+.+ .+..+.. .....+.|||+|++|
T Consensus 81 --------------------------------------------~~~~v~lyd~~~~~i~~~~~-~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 81 --------------------------------------------MPAKVTLYDVKGKKIFSFGT-QPRNTISWSPDGRFL 115 (194)
T ss_pred --------------------------------------------CCcccEEEcCcccEeEeecC-CCceEEEECCCCCEE
Confidence 011344445544 2333432 234579999999999
Q ss_pred EEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
++...... ..+|.+||....+.-..... .....+.|||||+.
T Consensus 116 ~~~g~~n~----------~G~l~~wd~~~~~~i~~~~~--------------~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 116 VLAGFGNL----------NGDLEFWDVRKKKKISTFEH--------------SDATDVEWSPDGRY 157 (194)
T ss_pred EEEEccCC----------CcEEEEEECCCCEEeecccc--------------CcEEEEEEcCCCCE
Confidence 98864321 35788999884432211110 11235899999995
No 42
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.78 E-value=4e-06 Score=88.47 Aligned_cols=127 Identities=24% Similarity=0.257 Sum_probs=77.0
Q ss_pred ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007140 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (616)
Q Consensus 35 ~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~ 114 (616)
..++||||++|||..+.+. +....|+++|+++|+...-. ... .....+.|++|++.|+|+.......
T Consensus 128 ~~~~Spdg~~la~~~s~~G-----~e~~~l~v~Dl~tg~~l~d~-i~~----~~~~~~~W~~d~~~~~y~~~~~~~~--- 194 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG-----SEWYTLRVFDLETGKFLPDG-IEN----PKFSSVSWSDDGKGFFYTRFDEDQR--- 194 (414)
T ss_dssp EEEETTTSSEEEEEEEETT-----SSEEEEEEEETTTTEEEEEE-EEE----EESEEEEECTTSSEEEEEECSTTTS---
T ss_pred eeeECCCCCEEEEEecCCC-----CceEEEEEEECCCCcCcCCc-ccc----cccceEEEeCCCCEEEEEEeCcccc---
Confidence 6789999999999987632 34578999999999543210 011 1123499999999999974321100
Q ss_pred CcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC--eeecC---CCCc-eeeeeECCCCc
Q 007140 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFG---TPAV-YTAVEPSPDQK 187 (616)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~--~~~l~---~~~~-~~~~~~SpDg~ 187 (616)
+ .+ .....++|...+ ++. ...|. .... ...+..|+||+
T Consensus 195 ---------------~---------------~~-----~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~ 239 (414)
T PF02897_consen 195 ---------------T---------------SD-----SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGR 239 (414)
T ss_dssp ---------------S----------------C-----CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSS
T ss_pred ---------------c---------------cc-----CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCccc
Confidence 0 00 001357888888 442 22332 2234 55789999999
Q ss_pred EEEEEeccCCCcccccCcccCccEEEEeCCC
Q 007140 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (616)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (616)
+|++....... .+++|+.++..
T Consensus 240 ~l~i~~~~~~~---------~s~v~~~d~~~ 261 (414)
T PF02897_consen 240 YLFISSSSGTS---------ESEVYLLDLDD 261 (414)
T ss_dssp EEEEEEESSSS---------EEEEEEEECCC
T ss_pred EEEEEEEcccc---------CCeEEEEeccc
Confidence 99988764321 14677777664
No 43
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.78 E-value=1.7e-08 Score=93.47 Aligned_cols=109 Identities=16% Similarity=0.028 Sum_probs=77.3
Q ss_pred CceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEE
Q 007140 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (616)
Q Consensus 480 ~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl 559 (616)
++.=.++|++.+|..|.|||++|..-. .++|+||+.++ . ++ .++ .++..-.|+..||+||
T Consensus 54 ve~ydvTf~g~~g~rI~gwlvlP~~~~----~~~P~vV~fhG----Y--------~g-~~g---~~~~~l~wa~~Gyavf 113 (321)
T COG3458 54 VEVYDVTFTGYGGARIKGWLVLPRHEK----GKLPAVVQFHG----Y--------GG-RGG---EWHDMLHWAVAGYAVF 113 (321)
T ss_pred eEEEEEEEeccCCceEEEEEEeecccC----CccceEEEEee----c--------cC-CCC---CccccccccccceeEE
Confidence 455568999999999999999998753 35688887621 0 00 111 1123346999999999
Q ss_pred E-CCCCCccccCCC---ccCC-----h--hHH----------HHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 560 A-GPSIPIIGEGDK---LPND-----R--FVE----------QLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 560 ~-n~R~GS~GyG~~---f~~~-----~--~g~----------~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
. |.| |-.++-++ .+.+ . -|. ..+.|+.-+|+.|+..+.||.+||+||+.
T Consensus 114 ~MdvR-GQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~ 183 (321)
T COG3458 114 VMDVR-GQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGG 183 (321)
T ss_pred EEecc-cCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEecc
Confidence 9 999 97776331 1111 0 022 24689999999999999999999999985
No 44
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.6e-05 Score=75.54 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=150.4
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
.+||.-+|. ..+|+...+.........+.+.|+|++++|.-....++ .+.-..|.+|.+.|+...+-......
T Consensus 16 ~gI~v~~ld--~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-----~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 16 QGIYVFNLD--TKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-----EGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CceEEEEEe--CcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-----cCcEEEEEEcCCCCeEEEeeccccCC
Confidence 467777774 24565555543333335778899999998555443221 45567777777778776663222110
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
....-.+.+++|+.|+...-.. +. + .++. ++ .+.... ...++ +.+.
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~-g~------------v-----------~v~p--~~--~dG~l~---~~v~~-~~h~ 134 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHS-GS------------V-----------SVYP--LQ--ADGSLQ---PVVQV-VKHT 134 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccC-ce------------E-----------EEEE--cc--cCCccc---cceee-eecC
Confidence 0012456778888766541110 00 0 0000 00 000000 00000 0111
Q ss_pred -CC-CeeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 -DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 -~g-~~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
.| .++|-.. ......+.||+++|+..... ..++++++++.+.....+..... | ..
T Consensus 135 g~~p~~rQ~~~--h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v~---~------G~ 191 (346)
T COG2706 135 GSGPHERQESP--HVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEVK---P------GA 191 (346)
T ss_pred CCCCCccccCC--ccceeeeCCCCCEEEEeecC------------CceEEEEEcccCccccccccccC---C------CC
Confidence 11 1222221 24567899999999888653 24788998875544433332111 1 23
Q ss_pred CCCcceeecCCCceEEEE-EeecCCCcccccCCCceeEeccCCCCCCCCceEec---ccc------ccccceeecCCCce
Q 007140 243 GMRSISWRADKPSTLYWV-EAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLD------LRFRSVSWCDDSLA 312 (616)
Q Consensus 243 ~~~~~~wspdg~~~l~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~---~~~------~~~~~~~wspDg~~ 312 (616)
|.|.+.+.|+++ ++|+ ..+ .+.+.++..++ ..|+.+.|- ..+ .....+..|+||+.
T Consensus 192 GPRHi~FHpn~k--~aY~v~EL-----------~stV~v~~y~~-~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 192 GPRHIVFHPNGK--YAYLVNEL-----------NSTVDVLEYNP-AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred CcceEEEcCCCc--EEEEEecc-----------CCEEEEEEEcC-CCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 457799999998 4444 222 22333333312 234444322 111 12345678999998
Q ss_pred EEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCC
Q 007140 313 LVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEG 392 (616)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~ 392 (616)
|+...+.. ..-.++.+|.++ ++.+.+.....+.. .|- .+.+++.|+.|+++..+. ....+|
T Consensus 258 LYasNRg~-dsI~~f~V~~~~--g~L~~~~~~~teg~--~PR--~F~i~~~g~~Liaa~q~s--d~i~vf---------- 318 (346)
T COG2706 258 LYASNRGH-DSIAVFSVDPDG--GKLELVGITPTEGQ--FPR--DFNINPSGRFLIAANQKS--DNITVF---------- 318 (346)
T ss_pred EEEecCCC-CeEEEEEEcCCC--CEEEEEEEeccCCc--CCc--cceeCCCCCEEEEEccCC--CcEEEE----------
Confidence 76654332 223455566655 33222211111110 011 277888999887765422 233333
Q ss_pred CcceeEeeecCCCceeee
Q 007140 393 NIPFLDLFDINTGSKERI 410 (616)
Q Consensus 393 ~~~~l~~~d~~~g~~~~l 410 (616)
++|.++|..+.+
T Consensus 319 ------~~d~~TG~L~~~ 330 (346)
T COG2706 319 ------ERDKETGRLTLL 330 (346)
T ss_pred ------EEcCCCceEEec
Confidence 577778877665
No 45
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.72 E-value=5.7e-07 Score=83.56 Aligned_cols=144 Identities=18% Similarity=0.254 Sum_probs=84.9
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
..||..+.+. .....+. +.....+...+|||+|+++|.+... ....|-++++++.....+ ....
T Consensus 39 ~~l~~~~~~~----~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~--------~~~~v~lyd~~~~~i~~~---~~~~ 102 (194)
T PF08662_consen 39 FELFYLNEKN----IPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGS--------MPAKVTLYDVKGKKIFSF---GTQP 102 (194)
T ss_pred EEEEEEecCC----Cccceee-ccCCCceEEEEECcCCCEEEEEEcc--------CCcccEEEcCcccEeEee---cCCC
Confidence 4567776553 5555554 3333358999999999999988642 223777778863322222 2222
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
...+.|||+|+.|+...-. . ....|.++|+
T Consensus 103 ----~n~i~wsP~G~~l~~~g~~--------------------------------n--------------~~G~l~~wd~ 132 (194)
T PF08662_consen 103 ----RNTISWSPDGRFLVLAGFG--------------------------------N--------------LNGDLEFWDV 132 (194)
T ss_pred ----ceEEEECCCCCEEEEEEcc--------------------------------C--------------CCcEEEEEEC
Confidence 4578999999998885110 0 1245666776
Q ss_pred C-CCeeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE
Q 007140 165 D-GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (616)
Q Consensus 165 ~-g~~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (616)
. .+............++|||||++++..... +. . +....+.+|+..|+..
T Consensus 133 ~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~-~r-~-----~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 133 RKKKKISTFEHSDATDVEWSPDGRYLATATTS-PR-L-----RVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCCEEeeccccCcEEEEEEcCCCCEEEEEEec-cc-e-----eccccEEEEEecCeEe
Confidence 4 222221222245689999999999977542 10 0 0123455666666543
No 46
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.70 E-value=5.1e-08 Score=97.47 Aligned_cols=109 Identities=20% Similarity=0.140 Sum_probs=74.0
Q ss_pred CceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEE
Q 007140 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (616)
Q Consensus 480 ~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl 559 (616)
.....|+|++.+|..|.|||++|.+-. .++|+||..++ +++. .. .+.....||.+||+||
T Consensus 54 ~~vy~v~f~s~~g~~V~g~l~~P~~~~----~~~Pavv~~hG------------yg~~-~~---~~~~~~~~a~~G~~vl 113 (320)
T PF05448_consen 54 VEVYDVSFESFDGSRVYGWLYRPKNAK----GKLPAVVQFHG------------YGGR-SG---DPFDLLPWAAAGYAVL 113 (320)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEES-SS----SSEEEEEEE--------------TT---GG---GHHHHHHHHHTT-EEE
T ss_pred EEEEEEEEEccCCCEEEEEEEecCCCC----CCcCEEEEecC------------CCCC-CC---CcccccccccCCeEEE
Confidence 466779999999999999999998532 34699888722 1111 10 1123346999999999
Q ss_pred E-CCCCCccccCCCcc-----------C--------ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 560 A-GPSIPIIGEGDKLP-----------N--------DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 560 ~-n~R~GS~GyG~~f~-----------~--------~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
. |.| |-.|...+.. . .-+-...+.|++.||++|..++.+|++||+||+.
T Consensus 114 ~~d~r-Gqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~ 182 (320)
T PF05448_consen 114 AMDVR-GQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGG 182 (320)
T ss_dssp EE--T-TTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEE
T ss_pred EecCC-CCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEee
Confidence 9 999 8664433321 0 1123357899999999999999999999999985
No 47
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.64 E-value=1.3e-06 Score=94.38 Aligned_cols=115 Identities=16% Similarity=0.239 Sum_probs=79.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+.+|.+||||+++||+.....++ .+...+||+.+. +++.+++|.... ...+.|||||+.|+|+......
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~--~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWspDG~~lw~v~dg~~~- 420 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA--PDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSLDADAVWVVVDGNTV- 420 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC--CCcceEEEEEeC-CCcceeeecCCC------CCCceECCCCCceEEEecCcce-
Confidence 468999999999999998642111 145679999997 556688864332 5789999999999997432110
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-CeeecCCCCceeeeeECCCCcEEE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~~l~~~~~~~~~~~SpDg~~i~ 190 (616)
. .... . ....+||++++++ +.++ .....+..+.|||||++|+
T Consensus 421 ------------~-----------~v~~------~-------~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA 463 (591)
T PRK13616 421 ------------V-----------RVIR------D-------PATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAA 463 (591)
T ss_pred ------------E-----------EEec------c-------CCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEE
Confidence 0 0000 0 0246899999854 6654 2233578999999999999
Q ss_pred EEe
Q 007140 191 ITS 193 (616)
Q Consensus 191 ~~~ 193 (616)
|..
T Consensus 464 ~i~ 466 (591)
T PRK13616 464 MII 466 (591)
T ss_pred EEE
Confidence 986
No 48
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=0.00033 Score=68.10 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=92.0
Q ss_pred ceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEec----cccccccceeecCCCce--EEEeeecc
Q 007140 247 ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH----KLDLRFRSVSWCDDSLA--LVNETWYK 320 (616)
Q Consensus 247 ~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~----~~~~~~~~~~wspDg~~--l~~~~~~~ 320 (616)
....||++. | ++ .|-+ .+.+++++. +.|...... ......+.+.|.|+++. ++.+ -
T Consensus 150 a~~tP~~~~-l-~v--~DLG--------~Dri~~y~~---~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E---L 211 (346)
T COG2706 150 ANFTPDGRY-L-VV--PDLG--------TDRIFLYDL---DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE---L 211 (346)
T ss_pred eeeCCCCCE-E-EE--eecC--------CceEEEEEc---ccCccccccccccCCCCCcceEEEcCCCcEEEEEec---c
Confidence 457889873 2 22 2221 245666666 334333211 33445678999999984 3333 2
Q ss_pred CccEEEEEEeCCCCCCCceEEe-----ecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcc
Q 007140 321 TSQTRTWLVCPGSKDVAPRVLF-----DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIP 395 (616)
Q Consensus 321 ~~~~~l~~~d~~~~~~~~~~l~-----~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~ 395 (616)
.....+|.++... ++.++|- ..++. ...+...+..++||+.||+..+..+ ...+
T Consensus 212 ~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~---g~~~~aaIhis~dGrFLYasNRg~d--sI~~-------------- 270 (346)
T COG2706 212 NSTVDVLEYNPAV--GKFEELQTIDTLPEDFT---GTNWAAAIHISPDGRFLYASNRGHD--SIAV-------------- 270 (346)
T ss_pred CCEEEEEEEcCCC--ceEEEeeeeccCccccC---CCCceeEEEECCCCCEEEEecCCCC--eEEE--------------
Confidence 3445677777654 3334441 12222 1223345889999999998765432 2223
Q ss_pred eeEeeecCCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEeCCCCceeeee
Q 007140 396 FLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (616)
Q Consensus 396 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt 468 (616)
+++|..+|+.+-+....-.... .-. -.++++++.|+........ -.+|.+|..+|.++.+.
T Consensus 271 --f~V~~~~g~L~~~~~~~teg~~--PR~-------F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 271 --FSVDPDGGKLELVGITPTEGQF--PRD-------FNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLG 331 (346)
T ss_pred --EEEcCCCCEEEEEEEeccCCcC--Ccc-------ceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEecc
Confidence 3577777765544211100000 111 1356677777766665554 56888888887766653
No 49
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.61 E-value=0.00023 Score=71.61 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=68.7
Q ss_pred CCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec-CCCCCCCCCcccC
Q 007140 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVP 119 (616)
Q Consensus 41 DG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~-~~~~~~~~~~~~~ 119 (616)
|+++ +|+.+... ....+.|+++|.++++.......... ... ..||||+.|+.... -+|..
T Consensus 11 ~~~~-v~V~d~~~----~~~~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~-------- 71 (352)
T TIGR02658 11 DARR-VYVLDPGH----FAATTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIA-------- 71 (352)
T ss_pred CCCE-EEEECCcc----cccCceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEeccccccc--------
Confidence 5555 77775310 01138999999998875433222221 223 48999998877522 11110
Q ss_pred CCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecCCCC--------ceeeeeECCCCcEE
Q 007140 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPA--------VYTAVEPSPDQKYV 189 (616)
Q Consensus 120 ~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~~~~--------~~~~~~~SpDg~~i 189 (616)
.|+ ....|-++|+ +++ ...|..++ .-..+++||||++|
T Consensus 72 ---------~G~-----------------------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 72 ---------RGK-----------------------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred ---------cCC-----------------------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEE
Confidence 010 2356778888 664 33443221 22378999999999
Q ss_pred EEEeccCCCcccccCcccCccEEEEeCCCceE
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (616)
++.. ..| ...+-++|+..+++
T Consensus 120 ~V~n-~~p----------~~~V~VvD~~~~kv 140 (352)
T TIGR02658 120 LFYQ-FSP----------SPAVGVVDLEGKAF 140 (352)
T ss_pred EEec-CCC----------CCEEEEEECCCCcE
Confidence 8773 332 24688999986654
No 50
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=1.2e-05 Score=77.79 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=38.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+-..+|||||++|+-= .+.+-+.++|+.+..+. ....+... +..++|||||++|+.-
T Consensus 117 ~Vl~~~fsp~g~~l~tG----------sGD~TvR~WD~~TeTp~~t~KgH~~W-----VlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTG----------SGDTTVRLWDLDTETPLFTCKGHKNW-----VLCVAWSPDGKKIASG 175 (480)
T ss_pred cEEEEEecCCCceEEec----------CCCceEEeeccCCCCcceeecCCccE-----EEEEEECCCcchhhcc
Confidence 35678999999998753 34566667788775432 22222221 5689999999998763
No 51
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.45 E-value=0.00085 Score=68.43 Aligned_cols=154 Identities=14% Similarity=0.043 Sum_probs=72.6
Q ss_pred eeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCC-c-eEEEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-K-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
...+.++|||++|+..... ...+.+++++. + ..+.+...+. ..+.....++|||+
T Consensus 82 p~~i~~~~~g~~l~v~~~~------------~~~v~v~~~~~~g~~~~~~~~~~~-----------~~~~~~~~~~p~g~ 138 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYN------------ANCVSVSPLDKDGIPVAPIQIIEG-----------LEGCHSANIDPDNR 138 (330)
T ss_pred ceEEEECCCCCEEEEEEcC------------CCeEEEEEECCCCCCCCceeeccC-----------CCcccEeEeCCCCC
Confidence 3578999999999887532 23567777642 2 1111111110 01123467899987
Q ss_pred ceEEEEEeecCCCcccccCCCceeEeccCCCCCC-CCceE-----ec-cccccccceeecCCCceEEEeeeccCccEEEE
Q 007140 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEI-----LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (616)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~-----l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~ 327 (616)
. + |+.. ...+.+.+++. +. +.... +. ........+.|+|||+.++.... ..+ .|.
T Consensus 139 ~-l-~v~~----------~~~~~v~v~d~---~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-~~~--~v~ 200 (330)
T PRK11028 139 T-L-WVPC----------LKEDRIRLFTL---SDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-LNS--SVD 200 (330)
T ss_pred E-E-EEee----------CCCCEEEEEEE---CCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-CCC--EEE
Confidence 3 3 3311 12245555565 21 22110 11 11223456899999997544332 123 455
Q ss_pred EEeCCCCCCCceEEeecc-cccccCCCCCC-CeeeCCCCCEEEEEe
Q 007140 328 LVCPGSKDVAPRVLFDRV-FENVYSDPGSP-MMTRTSTGTNVIAKI 371 (616)
Q Consensus 328 ~~d~~~~~~~~~~l~~~~-~~~~~~~~g~~-~~~~s~dgk~l~~~~ 371 (616)
+++++...++.+.+.... .......+..+ .+.++|||+++|+..
T Consensus 201 v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 201 VWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred EEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 555542112222221110 00000001111 267889999988864
No 52
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.44 E-value=0.00049 Score=72.66 Aligned_cols=225 Identities=17% Similarity=0.185 Sum_probs=131.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+....|+--|.+|||-.. +-.||-||+-.+.. ..+-+... ......+..||||+.|+--..
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---------klgQLlVweWqsEs-YVlKQQgH---~~~i~~l~YSpDgq~iaTG~e----- 370 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---------KLGQLLVWEWQSES-YVLKQQGH---SDRITSLAYSPDGQLIATGAE----- 370 (893)
T ss_pred eeeEEEecccCCEEEEcCC---------ccceEEEEEeeccc-eeeecccc---ccceeeEEECCCCcEEEeccC-----
Confidence 5778899999999999764 24577777765432 22211111 011568899999998876421
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecCCC-CceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~~~-~~~~~~~~SpDg~~ 188 (616)
+| .+-++|. +|- ..-.+.. ..++.+.|+.+|+.
T Consensus 371 -----------------Dg---------------------------KVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 371 -----------------DG---------------------------KVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred -----------------CC---------------------------cEEEEeccCceEEEEeccCCCceEEEEEEecCCE
Confidence 12 1223333 221 1112221 24678999999998
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCc-ceeecCCCceEEEEEeecCC
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRS-ISWRADKPSTLYWVEAQDRG 266 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~wspdg~~~l~~~~~~d~~ 266 (616)
|+..+.+. .+..||+. ..+-+..+. | .... ...+-|-...|+.+..+|.
T Consensus 407 llssSLDG-------------tVRAwDlkRYrNfRTft~-------P--------~p~QfscvavD~sGelV~AG~~d~- 457 (893)
T KOG0291|consen 407 LLSSSLDG-------------TVRAWDLKRYRNFRTFTS-------P--------EPIQFSCVAVDPSGELVCAGAQDS- 457 (893)
T ss_pred EEEeecCC-------------eEEeeeecccceeeeecC-------C--------CceeeeEEEEcCCCCEEEeeccce-
Confidence 88877643 46677775 344455443 0 0111 1122232223555533221
Q ss_pred CcccccCCCceeEeccCCCCCCCCceE-eccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEE-eec
Q 007140 267 DANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL-FDR 344 (616)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l-~~~ 344 (616)
=.|++|+. .+|+.-. |....+.+....|+|+|..|+..+|.+ ..+||-+=-.. +..+.| ...
T Consensus 458 ---------F~IfvWS~---qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk--TVRiW~if~s~--~~vEtl~i~s 521 (893)
T KOG0291|consen 458 ---------FEIFVWSV---QTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK--TVRIWDIFSSS--GTVETLEIRS 521 (893)
T ss_pred ---------EEEEEEEe---ecCeeeehhcCCCCcceeeEEccccCeEEeccccc--eEEEEEeeccC--ceeeeEeecc
Confidence 15777787 6666555 555677788889999999888888753 35788663332 233333 122
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEee
Q 007140 345 VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 345 ~~~~~~~~~g~~~~~~s~dgk~l~~~~~ 372 (616)
++.. +.+.|||+.|+++..
T Consensus 522 dvl~---------vsfrPdG~elaVaTl 540 (893)
T KOG0291|consen 522 DVLA---------VSFRPDGKELAVATL 540 (893)
T ss_pred ceeE---------EEEcCCCCeEEEEEe
Confidence 2222 889999999998875
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.43 E-value=0.0005 Score=69.61 Aligned_cols=136 Identities=23% Similarity=0.279 Sum_probs=74.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+...++||||+++|-+.. ...++++|=.+|+..-.......- ...+=.++||||+++++-+..+....
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~aH-kGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSDAH-KGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCCCc-cccEEEEEECCCCceEEEecCCceEE
Confidence 4678899999999877653 368899998888755443321110 11133789999999988764322110
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccce-eEeccceEEEEeCCCCeeecC------------CCCcee
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLF-DYYTTAQLVLGSLDGTAKDFG------------TPAVYT 178 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~-~~~~~~~l~~~d~~g~~~~l~------------~~~~~~ 178 (616)
-..+.....+++...+. ..+..+. ......+|..+.+.|.+.-|. +.+.++
T Consensus 261 ---IWdVs~~slv~t~~~~~-------------~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~IT 324 (603)
T KOG0318|consen 261 ---IWDVSTNSLVSTWPMGS-------------TVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSIT 324 (603)
T ss_pred ---EEEeeccceEEEeecCC-------------chhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccccee
Confidence 00111111111111010 0011111 111356777777777544332 123467
Q ss_pred eeeECCCCcEEEEEec
Q 007140 179 AVEPSPDQKYVLITSM 194 (616)
Q Consensus 179 ~~~~SpDg~~i~~~~~ 194 (616)
.++.|||+++|+-.+.
T Consensus 325 aLtv~~d~~~i~Sgsy 340 (603)
T KOG0318|consen 325 ALTVSPDGKTIYSGSY 340 (603)
T ss_pred EEEEcCCCCEEEeecc
Confidence 8999999998876654
No 54
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.41 E-value=0.00042 Score=67.82 Aligned_cols=193 Identities=18% Similarity=0.174 Sum_probs=110.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+..+.|+|+|+.|++... ...|.+++..+++........... ...+.|+|+++.|+....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~----- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGSS----- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEcC-----
Confidence 4779999999999887653 357777788776533222221111 457899999987766411
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CC-CeeecCCC-CceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g-~~~~l~~~-~~~~~~~~SpDg~~ 188 (616)
...+.++++ ++ ....+... ..+..+.|+|+++.
T Consensus 72 --------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 72 --------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred --------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 134566666 32 33333322 24668999999776
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCC
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~ 267 (616)
++..... ..+.+|++..+ ....+... ......+.|+|++. ++....
T Consensus 108 ~~~~~~~-------------~~i~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~--~l~~~~----- 154 (289)
T cd00200 108 LSSSSRD-------------KTIKVWDVETGKCLTTLRGH-------------TDWVNSVAFSPDGT--FVASSS----- 154 (289)
T ss_pred EEEecCC-------------CeEEEEECCCcEEEEEeccC-------------CCcEEEEEEcCcCC--EEEEEc-----
Confidence 6655312 36888998743 33333311 01123578888865 323211
Q ss_pred cccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 268 ANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
....+.+++. ..++.. .+.........+.|+|++..++.... .+ .+.++|+..
T Consensus 155 ------~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~--~i~i~d~~~ 208 (289)
T cd00200 155 ------QDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DG--TIKLWDLST 208 (289)
T ss_pred ------CCCcEEEEEc---cccccceeEecCccccceEEECCCcCEEEEecC--CC--cEEEEECCC
Confidence 1234555665 323332 23333345677899999976655432 23 577777765
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.40 E-value=0.00027 Score=69.17 Aligned_cols=222 Identities=15% Similarity=0.145 Sum_probs=123.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (616)
.+..+.|+|+++.|+.... ...|+++++.+++. ..+..... .+..+.|+++++.|+...
T Consensus 53 ~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~----- 112 (289)
T cd00200 53 PVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSS----- 112 (289)
T ss_pred ceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEec-----
Confidence 3568999999988777653 36788889887543 33322221 156789999877554431
Q ss_pred CCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecC-CCCceeeeeECCCCc
Q 007140 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQK 187 (616)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~-~~~~~~~~~~SpDg~ 187 (616)
....+.++++ +++ ...+. ....+..+.|+|+++
T Consensus 113 --------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 113 --------------------------------------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred --------------------------------------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 0134556666 343 22232 223467899999988
Q ss_pred EEEEEeccCCCcccccCcccCccEEEEeCCCce-EEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCC
Q 007140 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (616)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (616)
.|+..... ..+.++|+..++ ...+... ......+.|+|+++. ++.. .
T Consensus 149 ~l~~~~~~-------------~~i~i~d~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~-l~~~-~---- 196 (289)
T cd00200 149 FVASSSQD-------------GTIKLWDLRTGKCVATLTGH-------------TGEVNSVAFSPDGEK-LLSS-S---- 196 (289)
T ss_pred EEEEEcCC-------------CcEEEEEccccccceeEecC-------------ccccceEEECCCcCE-EEEe-c----
Confidence 77766422 268889987443 3332210 011345889999863 4333 1
Q ss_pred CcccccCCCceeEeccCCCCCCCCceEec-cccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecc
Q 007140 267 DANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (616)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (616)
....+.+++. ..++..... ........+.|+|++..++... .++ .|+++++.++ .....+...
T Consensus 197 -------~~~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~--~i~i~~~~~~--~~~~~~~~~ 260 (289)
T cd00200 197 -------SDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLLASGS--EDG--TIRVWDLRTG--ECVQTLSGH 260 (289)
T ss_pred -------CCCcEEEEEC---CCCceecchhhcCCceEEEEEcCCCcEEEEEc--CCC--cEEEEEcCCc--eeEEEcccc
Confidence 1234556665 333333222 3334566789999976655543 123 5777777652 222222111
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 346 ~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
. . ....+.|+++++.++...
T Consensus 261 ~-~-----~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 261 T-N-----SVTSLAWSPDGKRLASGS 280 (289)
T ss_pred C-C-----cEEEEEECCCCCEEEEec
Confidence 0 0 011278899888766543
No 56
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.39 E-value=0.00079 Score=67.79 Aligned_cols=90 Identities=17% Similarity=0.027 Sum_probs=49.1
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEee-cc-ccccCCCceeEEEEECCCCceE-ecccCC
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRV-DE-EDNVSSCKLRVWIADAETGEAK-PLFESP 81 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~-~~-~~~~~~~~~~l~v~~~~~g~~~-~lt~~~ 81 (616)
..|++.+... ++ .+..++.+..... .+||||+.|+..... .. ..+ .....|-++|+++.+.. .| ..+
T Consensus 27 ~~v~ViD~~~----~~--v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G--~~~d~V~v~D~~t~~~~~~i-~~p 96 (352)
T TIGR02658 27 TQVYTIDGEA----GR--VLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARG--KRTDYVEVIDPQTHLPIADI-ELP 96 (352)
T ss_pred ceEEEEECCC----CE--EEEEEEccCCCce-eECCCCCEEEEEeccccccccC--CCCCEEEEEECccCcEEeEE-ccC
Confidence 4466666532 32 2222444433444 599999987766541 00 000 23467888899998754 23 211
Q ss_pred Ccc---ccccccceEEecCCcEEEEE
Q 007140 82 DIC---LNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 82 ~~~---~~~~~~~~~wspdg~~l~~~ 104 (616)
... .......+..||||++|++.
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEe
Confidence 110 01112378899999988774
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.3e-05 Score=78.29 Aligned_cols=249 Identities=15% Similarity=0.202 Sum_probs=143.9
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI 83 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~ 83 (616)
..+||.+-.. |+..+|..+. ...+..+.|+++|++||.-.. + ..|.++|.+..+. +.+.....
T Consensus 197 ~~vylW~~~s----~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~--------~--g~v~iwD~~~~k~~~~~~~~h~- 260 (484)
T KOG0305|consen 197 QSVYLWSASS----GSVTELCSFG-EELVTSVKWSPDGSHLAVGTS--------D--GTVQIWDVKEQKKTRTLRGSHA- 260 (484)
T ss_pred ceEEEEecCC----CceEEeEecC-CCceEEEEECCCCCEEEEeec--------C--CeEEEEehhhccccccccCCcC-
Confidence 4788888765 8888888664 336899999999999998654 2 4555668776543 33322011
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEe
Q 007140 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (616)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d 163 (616)
..++.++|. +..+..-. ....|...|
T Consensus 261 ---~rvg~laW~--~~~lssGs-------------------------------------------------r~~~I~~~d 286 (484)
T KOG0305|consen 261 ---SRVGSLAWN--SSVLSSGS-------------------------------------------------RDGKILNHD 286 (484)
T ss_pred ---ceeEEEecc--CceEEEec-------------------------------------------------CCCcEEEEE
Confidence 236788887 22222210 011233333
Q ss_pred C-CC-C-eeec-CCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCCCCCCCcccc
Q 007140 164 L-DG-T-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYN 238 (616)
Q Consensus 164 ~-~g-~-~~~l-~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~ 238 (616)
+ .. . ...+ .....+..++|++|+++++-..++ ..+.+||.... ....++.+.
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H~---------- 343 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEHT---------- 343 (484)
T ss_pred EecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEeccc----------
Confidence 3 11 1 1111 223356799999999999866543 36888887433 333333321
Q ss_pred CccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeee
Q 007140 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETW 318 (616)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~ 318 (616)
..+..+.|+|=.+..|+- .+| .....+..|+. .+|+.........++..+.||+..+.|+..-.
T Consensus 344 ---aAVKA~awcP~q~~lLAs----GGG------s~D~~i~fwn~---~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 344 ---AAVKALAWCPWQSGLLAT----GGG------SADRCIKFWNT---NTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred ---eeeeEeeeCCCccCceEE----cCC------CcccEEEEEEc---CCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 224568898887653321 222 12235666676 44555444456677889999999876665433
Q ss_pred ccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007140 319 YKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 319 ~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~ 372 (616)
+......||.+..-. ....+......-. .+++||||..|+..+.
T Consensus 408 ~s~n~i~lw~~ps~~---~~~~l~gH~~RVl-------~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 408 YSENQITLWKYPSMK---LVAELLGHTSRVL-------YLALSPDGETIVTGAA 451 (484)
T ss_pred CCCCcEEEEeccccc---eeeeecCCcceeE-------EEEECCCCCEEEEecc
Confidence 333455777774421 1233322221111 1899999999887765
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.37 E-value=1.8e-05 Score=77.38 Aligned_cols=229 Identities=16% Similarity=0.220 Sum_probs=119.4
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+....||||.++|.-.... ..++++|+.+|+.+.+..... .-.+.+..|.|||.+++.-.++
T Consensus 271 ~V~yi~wSPDdryLlaCg~~----------e~~~lwDv~tgd~~~~y~~~~---~~S~~sc~W~pDg~~~V~Gs~d---- 333 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFD----------EVLSLWDVDTGDLRHLYPSGL---GFSVSSCAWCPDGFRFVTGSPD---- 333 (519)
T ss_pred ceEEEEECCCCCeEEecCch----------HheeeccCCcchhhhhcccCc---CCCcceeEEccCCceeEecCCC----
Confidence 47789999999998877542 348899999999887764431 1225689999999997664332
Q ss_pred CCCCcccCCCCeeeecCccccch-------hccccccccCCCcc-cceeEeccceEEEEeCCC--CeeecCCCCceeeee
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIII-------SRMTDNLLKDEYDE-SLFDYYTTAQLVLGSLDG--TAKDFGTPAVYTAVE 181 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~-------~~~~~~~~~~~~d~-~~~~~~~~~~l~~~d~~g--~~~~l~~~~~~~~~~ 181 (616)
+..+....+|+... ++++ ++ .-..|. .........++..++... ....+.....++++.
T Consensus 334 ---------r~i~~wdlDgn~~~~W~gvr~~~v~-dl-ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 334 ---------RTIIMWDLDGNILGNWEGVRDPKVH-DL-AITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred ---------CcEEEecCCcchhhcccccccceeE-EE-EEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 11211111121100 0111 10 000111 111111233455555522 122333444678999
Q ss_pred ECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEE
Q 007140 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (616)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (616)
.|.||+.+++.-. ..++.+||++.. +.+..+ .|... |...| -.
T Consensus 403 iS~d~k~~LvnL~-------------~qei~LWDl~e~--~lv~kY--------------~Ghkq------~~fiI--rS 445 (519)
T KOG0293|consen 403 ISKDGKLALVNLQ-------------DQEIHLWDLEEN--KLVRKY--------------FGHKQ------GHFII--RS 445 (519)
T ss_pred EcCCCcEEEEEcc-------------cCeeEEeecchh--hHHHHh--------------hcccc------cceEE--Ee
Confidence 9999998887743 347889998721 222111 11100 00000 00
Q ss_pred eecCCCcccc--cCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCce-EEEeeeccCccEEEEEEe
Q 007140 262 AQDRGDANVE--VSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVC 330 (616)
Q Consensus 262 ~~d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l~~~d 330 (616)
...+.+.... -+..+++|+|.. ..|+.- .|......+..++|.|-... |+.. .+++..+||-.+
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr---~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa--sDDgtIRIWg~~ 513 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHR---ISGKLLAVLSGHSKTVNCVSWNPADPEMFASA--SDDGTIRIWGPS 513 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEc---cCCceeEeecCCcceeeEEecCCCCHHHhhcc--CCCCeEEEecCC
Confidence 1111111111 123457788776 544443 35555556778999997654 5543 344666777653
No 59
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.31 E-value=0.001 Score=67.40 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=42.1
Q ss_pred ccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccE
Q 007140 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIY 380 (616)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~ 380 (616)
+..+.+||||..|+..... + .++++|-.++ +..-.++.+... ..+...++|+||+++++-.+.+ ...+
T Consensus 193 V~~VRysPDG~~Fat~gsD--g--ki~iyDGktg--e~vg~l~~~~aH---kGsIfalsWsPDs~~~~T~SaD---kt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSD--G--KIYIYDGKTG--EKVGELEDSDAH---KGSIFALSWSPDSTQFLTVSAD---KTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecCC--c--cEEEEcCCCc--cEEEEecCCCCc---cccEEEEEECCCCceEEEecCC---ceEE
Confidence 4568999999987765421 2 6999998774 322222211110 0122469999999998776542 2445
Q ss_pred EE
Q 007140 381 IL 382 (616)
Q Consensus 381 l~ 382 (616)
+|
T Consensus 261 IW 262 (603)
T KOG0318|consen 261 IW 262 (603)
T ss_pred EE
Confidence 55
No 60
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.29 E-value=3.1e-05 Score=84.60 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=37.5
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
.+-++.|.|=|++++-.+.++ .|-+|.+. -+..+.++... . ..|. .+-.+.+.|||||+
T Consensus 173 ~VKGvs~DP~Gky~ASqsdDr-------------tikvwrt~dw~i~k~It~pf-~-~~~~-----~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDDR-------------TLKVWRTSDWGIEKSITKPF-E-ESPL-----TTFFLRLSWSPDGH 232 (942)
T ss_pred cccceEECCccCeeeeecCCc-------------eEEEEEcccceeeEeeccch-h-hCCC-----cceeeecccCCCcC
Confidence 456899999999999887654 35555543 34445554411 0 0110 11124589999998
Q ss_pred ceEEEE
Q 007140 255 STLYWV 260 (616)
Q Consensus 255 ~~l~~~ 260 (616)
+ |+-.
T Consensus 233 ~-las~ 237 (942)
T KOG0973|consen 233 H-LASP 237 (942)
T ss_pred e-ecch
Confidence 4 4433
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0017 Score=61.96 Aligned_cols=230 Identities=16% Similarity=0.176 Sum_probs=126.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+....||+||..++-.+. ...|.++|...|+.......+.-+ .....|......++......
T Consensus 16 ~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sStk~--- 78 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSSTKE--- 78 (311)
T ss_pred ceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEccCCC---
Confidence 5889999999999887542 246777799888765554444322 45667777666666642110
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeec-CCCCceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDF-GTPAVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l-~~~~~~~~~~~SpDg~~ 188 (616)
...|--+++ +.+ ++-. ++.+.+..++.||-+..
T Consensus 79 --------------------------------------------d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 79 --------------------------------------------DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred --------------------------------------------CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 012333444 332 2322 23346778999998766
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCc
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (616)
.+-.+.+ ..|.+||+...+-+-+-.+.. ..-.++.|+| |+++...+
T Consensus 115 FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~G---LifA~~~~---- 160 (311)
T KOG1446|consen 115 FLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEG---LIFALANG---- 160 (311)
T ss_pred EEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCC---cEEEEecC----
Confidence 5544433 268899988655444332110 1125677876 44542221
Q ss_pred ccccCCCceeEeccCCCCCCCCceEe--c-cccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecc
Q 007140 269 NVEVSPRDIIYTQPAEPAEGEKPEIL--H-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~g~~~~l--~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (616)
.+.|-++|+..++.|..... . ....+...+.|||||+.++.... ..-++++|.=. |....-+...
T Consensus 161 ------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~--G~~~~tfs~~ 228 (311)
T KOG1446|consen 161 ------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFD--GTVKSTFSGY 228 (311)
T ss_pred ------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccC--CcEeeeEeec
Confidence 12344444434443333332 2 12234567899999998655442 23578888755 3322222111
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 346 ~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
... -..+ ....++|||+.|+..+
T Consensus 229 ~~~-~~~~--~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 229 PNA-GNLP--LSATFTPDSKFVLSGS 251 (311)
T ss_pred cCC-CCcc--eeEEECCCCcEEEEec
Confidence 110 0011 1367899999877654
No 62
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.28 E-value=3e-06 Score=83.76 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=62.5
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCC--C-chHHHHhhCCeEEEE-CCCCCc
Q 007140 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMT--P-TSSLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 491 DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~q~la~~Gy~Vl~-n~R~GS 566 (616)
||.+|.+.||+| +.+.++ |+|+||...| | +............. . .....|+.+||+|+. |.| |+
T Consensus 1 DGv~L~adv~~P-~~~~~~--~~P~il~~tp--Y------~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~R-G~ 68 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGG--PFPVILTRTP--Y------GKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVR-GT 68 (272)
T ss_dssp TS-EEEEEEEEE---TTSS--SEEEEEEEES--S------TCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-T-TS
T ss_pred CCCEEEEEEEec-CCCCCC--cccEEEEccC--c------CCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCc-cc
Confidence 899999999999 555544 4588877632 0 00000000000000 0 112349999999999 999 86
Q ss_pred cccCCCccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 567 ~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
.+-+-.|... ...+.+|..+.|+||.+|++-| .|||+++.
T Consensus 69 g~S~G~~~~~--~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~ 108 (272)
T PF02129_consen 69 GGSEGEFDPM--SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGI 108 (272)
T ss_dssp TTS-S-B-TT--SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEE
T ss_pred ccCCCccccC--ChhHHHHHHHHHHHHHhCCCCC-CeEEeecc
Confidence 4433333322 6679999999999999998876 69999875
No 63
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.28 E-value=3.5e-06 Score=83.59 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=69.6
Q ss_pred CceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCC-------CccCCCCCchHHHHh
Q 007140 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-------NEFSGMTPTSSLIFL 552 (616)
Q Consensus 480 ~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~q~la 552 (616)
...|.+.|...++..+.++|+.|.+. +.|.|+|+..++ |+.+..-+.+.+ ..+..........||
T Consensus 86 Y~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHg----Hg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LA 157 (390)
T PF12715_consen 86 YTREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHG----HGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLA 157 (390)
T ss_dssp EEEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE------TT--HHHHCT---SSGCG--STTSTTT-HHHHHH
T ss_pred eEEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCC----CCCCcccccCCcccccccchhhccccccHHHHHH
Confidence 47888999999999999999999886 247799988743 111111111111 012211113356799
Q ss_pred hCCeEEEE-CCCCCccccCCCcc-------------------CChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 553 ARRFAVLA-GPSIPIIGEGDKLP-------------------NDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 553 ~~Gy~Vl~-n~R~GS~GyG~~f~-------------------~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
.+||+||. |.. |=.-+|..-. ...|.+...-|.+.++|||..++.||++|||+.+
T Consensus 158 k~GYVvla~D~~-g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~G 232 (390)
T PF12715_consen 158 KRGYVVLAPDAL-GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMG 232 (390)
T ss_dssp TTTSEEEEE--T-TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEE
T ss_pred hCCCEEEEEccc-cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEe
Confidence 99999999 888 5332332100 0334455556666799999999999999999987
No 64
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=0.00089 Score=68.33 Aligned_cols=299 Identities=13% Similarity=0.185 Sum_probs=148.8
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (616)
...-.+|||-|.+|+-.-. .+-.|| ||+. .++....... +....|||..++|+..++....
T Consensus 212 Tetyv~wSP~GTYL~t~Hk---------~GI~lW-----GG~~f~r~~RF~Hp~----Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHK---------QGIALW-----GGESFDRIQRFYHPG----VQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeeEEecCCceEEEEEec---------cceeee-----cCccHHHHHhccCCC----ceeeecCCccceEEEecCCccc
Confidence 4667899999998877653 357788 5653 2222222212 5678899999988765332110
Q ss_pred CCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeee-cC--CCC--ceeeeeECC
Q 007140 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG--TPA--VYTAVEPSP 184 (616)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~-l~--~~~--~~~~~~~Sp 184 (616)
. .. + .+ ...+|+++|+ +|..+. .. ... ....+.||-
T Consensus 274 ~--------------~~--~---------------d~-------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 274 V--------------EE--D---------------DN-------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH 315 (698)
T ss_pred c--------------Cc--c---------------cC-------CCceEEEEEccccchhcceeccCCCccccceEEecc
Confidence 0 00 0 01 1368999999 884332 22 122 335789999
Q ss_pred CCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeec
Q 007140 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (616)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (616)
|+|+++....+ .|.+++..+ ...+..-++. ..|.+++.|||.+.-..||+...+
T Consensus 316 DdKy~Arm~~~--------------sisIyEtps--f~lld~Kslk----------i~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 316 DDKYFARMTGN--------------SISIYETPS--FMLLDKKSLK----------ISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred CCceeEEeccc--------------eEEEEecCc--eeeecccccC----------CccccCcccCCCcceEEEEccccc
Confidence 99999877532 233443322 1111110000 134578999999874334432111
Q ss_pred CCCcccccCCCceeEeccCCCCCCCCce--EeccccccccceeecCCCceEEEee-ec-----cCccEEEEEEeCCCCCC
Q 007140 265 RGDANVEVSPRDIIYTQPAEPAEGEKPE--ILHKLDLRFRSVSWCDDSLALVNET-WY-----KTSQTRTWLVCPGSKDV 336 (616)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~l~~~~~~~~~~~wspDg~~l~~~~-~~-----~~~~~~l~~~d~~~~~~ 336 (616)
. ...+-.++.++. . .+.+ .|. ........|-.+|.+|++.- ++ .+..+.+-++-++.++.
T Consensus 370 ~------~parvtL~evPs---~-~~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 370 N------IPARVTLMEVPS---K-REIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred C------CcceEEEEecCc---c-ceeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 1 111222332221 1 1111 111 11234467988888876532 11 11123333333443322
Q ss_pred CceEE-eecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeecCCCceeeeeecCC
Q 007140 337 APRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNR 415 (616)
Q Consensus 337 ~~~~l-~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~ 415 (616)
....+ ....+- .++|-|.|...++...+....+..+|. +....++.+.+ ..
T Consensus 438 pve~velke~vi---------~FaWEP~gdkF~vi~g~~~k~tvsfY~----------------~e~~~~~~~lV-k~-- 489 (698)
T KOG2314|consen 438 PVEVVELKESVI---------AFAWEPHGDKFAVISGNTVKNTVSFYA----------------VETNIKKPSLV-KE-- 489 (698)
T ss_pred Cceeeecchhee---------eeeeccCCCeEEEEEccccccceeEEE----------------eecCCCchhhh-hh--
Confidence 11112 122222 289999999888777554333444442 22112222222 11
Q ss_pred cccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEeCCC
Q 007140 416 EKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPL 461 (616)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~ 461 (616)
++... .+...+||.|+.+++..- ...-++++.+|..-
T Consensus 490 ---~dk~~-----~N~vfwsPkG~fvvva~l-~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 490 ---LDKKF-----ANTVFWSPKGRFVVVAAL-VSRRGDLEFYDTDY 526 (698)
T ss_pred ---hcccc-----cceEEEcCCCcEEEEEEe-cccccceEEEecch
Confidence 11100 123568999886655433 33678899998653
No 65
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.27 E-value=0.00019 Score=67.07 Aligned_cols=226 Identities=16% Similarity=0.123 Sum_probs=121.6
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.++....|+||++ |+..+. ...|.++|+++|+.++.+-..... +-..++|+|.+.|+--+++
T Consensus 65 ~v~dv~~s~dg~~-alS~sw---------D~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~qivSGSrD---- 126 (315)
T KOG0279|consen 65 FVSDVVLSSDGNF-ALSASW---------DGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNRQIVSGSRD---- 126 (315)
T ss_pred EecceEEccCCce-EEeccc---------cceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCceeecCCCc----
Confidence 6889999999996 665543 356777799998876665332211 5588999999987653211
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC--CeeecCC--CCceeeeeECCCC-
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG--TAKDFGT--PAVYTAVEPSPDQ- 186 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g--~~~~l~~--~~~~~~~~~SpDg- 186 (616)
..|-+++.-| +.+.... .+.++-+.|||+-
T Consensus 127 ---------------------------------------------kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 127 ---------------------------------------------KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES 161 (315)
T ss_pred ---------------------------------------------ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC
Confidence 1233334322 1111111 2356778999985
Q ss_pred cEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCC
Q 007140 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (616)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (616)
.-+++.... ...+-+||+.+-+.+. .++.. .........||||. |.- ..+
T Consensus 162 ~p~Ivs~s~------------DktvKvWnl~~~~l~~--~~~gh----------~~~v~t~~vSpDGs--lca---sGg- 211 (315)
T KOG0279|consen 162 NPIIVSASW------------DKTVKVWNLRNCQLRT--TFIGH----------SGYVNTVTVSPDGS--LCA---SGG- 211 (315)
T ss_pred CcEEEEccC------------CceEEEEccCCcchhh--ccccc----------cccEEEEEECCCCC--EEe---cCC-
Confidence 333333221 2357788888755432 11110 00012367899997 211 111
Q ss_pred CcccccCCCceeEeccCCCCCCCCceEecccc--ccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeec
Q 007140 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLD--LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (616)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~ 344 (616)
...++++|++ . +.+.+...+ ..+....|+|+.-.|+.... ..|-+.|++++ +++.+.
T Consensus 212 -------kdg~~~LwdL---~--~~k~lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl~~~----~~v~~l 270 (315)
T KOG0279|consen 212 -------KDGEAMLWDL---N--EGKNLYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDLESK----AVVEEL 270 (315)
T ss_pred -------CCceEEEEEc---c--CCceeEeccCCCeEeeEEecCCceeEeeccC-----CceEEEeccch----hhhhhc
Confidence 2346777787 4 333344332 34567889998766654331 13555666653 222211
Q ss_pred cccc-----ccCCCCCCCeeeCCCCCEEEEEe
Q 007140 345 VFEN-----VYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 345 ~~~~-----~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
.++. ....|--...+||+||..||...
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 1110 00011112478999999887543
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.23 E-value=0.0019 Score=66.17 Aligned_cols=235 Identities=9% Similarity=0.065 Sum_probs=107.8
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCC-ceEEEe---cCCCCCCCCCccccCccCCCCcceeec
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVREL---CDLPPAEDIPVCYNSVREGMRSISWRA 251 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (616)
.-..++++|||++|++..... ..+.+++++. +..... .........+. .........+.++|
T Consensus 88 ~p~~i~~~~~g~~l~vany~~------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~--rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGG------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPD--RQEGPHPHQVVFSP 153 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTT------------TEEEEEEECTTSEEEEEEEEEESEEEESSTT--TTSSTCEEEEEE-T
T ss_pred CcEEEEEecCCCEEEEEEccC------------CeEEEEEccCCcccceeeeecccCCCCCccc--ccccccceeEEECC
Confidence 345789999999999885432 3577777653 333222 11100000000 00001112467899
Q ss_pred CCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceE---ec-cccccccceeecCCCceEEEeeeccCccEEEE
Q 007140 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (616)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---l~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~ 327 (616)
||+. | |+. +. ..+.+++++.+. .+++... +. ......+.+.|+|||+.++... +... .|.
T Consensus 154 dg~~-v-~v~--dl--------G~D~v~~~~~~~-~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~s~--~v~ 217 (345)
T PF10282_consen 154 DGRF-V-YVP--DL--------GADRVYVYDIDD-DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-ELSN--TVS 217 (345)
T ss_dssp TSSE-E-EEE--ET--------TTTEEEEEEE-T-TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TTTT--EEE
T ss_pred CCCE-E-EEE--ec--------CCCEEEEEEEeC-CCceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CCCC--cEE
Confidence 9983 3 332 21 124455544410 1122222 11 2223456789999998643332 2223 455
Q ss_pred EEeCCCCCCCceEEeecccc-cccC-CCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeecCCC
Q 007140 328 LVCPGSKDVAPRVLFDRVFE-NVYS-DPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (616)
Q Consensus 328 ~~d~~~~~~~~~~l~~~~~~-~~~~-~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (616)
.+++....+..+.+...... ..+. ......+..+|||++||+..... +...+| .+|.++|
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf----------------~~d~~~g 279 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVF----------------DLDPATG 279 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEE----------------EECTTTT
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEE----------------EEecCCC
Confidence 55555221332332111000 0000 00112378899999999876532 122232 4555667
Q ss_pred ceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEeCCCCceeeee
Q 007140 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQIT 468 (616)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt 468 (616)
+.+.+-...-.. ..+.. ..++++|+++++.....+ --.+|.+|.++|+++.+.
T Consensus 280 ~l~~~~~~~~~G--~~Pr~-------~~~s~~g~~l~Va~~~s~-~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 280 TLTLVQTVPTGG--KFPRH-------FAFSPDGRYLYVANQDSN-TVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp TEEEEEEEEESS--SSEEE-------EEE-TTSSEEEEEETTTT-EEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEEeCCC--CCccE-------EEEeCCCCEEEEEecCCC-eEEEEEEeCCCCcEEEec
Confidence 766552211000 01111 246889887766554333 345667777788876664
No 67
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.20 E-value=2.6e-05 Score=84.55 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=62.1
Q ss_pred ccceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeecccc--ccCCCceeEEEEECCCCceEecccC
Q 007140 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEED--NVSSCKLRVWIADAETGEAKPLFES 80 (616)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~--~~~~~~~~l~v~~~~~g~~~~lt~~ 80 (616)
+-+.||+-.. ++..++++. .. ....|+|||||+.|+|+++.+.-. -...+..+||++++++|+.++ ..
T Consensus 377 ~~s~Lwv~~~-----gg~~~~lt~--g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~ 446 (591)
T PRK13616 377 PASSLWVGPL-----GGVAVQVLE--GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV 446 (591)
T ss_pred cceEEEEEeC-----CCcceeeec--CC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc
Confidence 4568888875 266688862 22 489999999999999986431000 001345799999999888775 22
Q ss_pred CCccccccccceEEecCCcEEEEEe
Q 007140 81 PDICLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 81 ~~~~~~~~~~~~~wspdg~~l~~~~ 105 (616)
+. . +..+.|||||++|+|+.
T Consensus 447 ~g-~----Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 447 PG-P----ISELQLSRDGVRAAMII 466 (591)
T ss_pred CC-C----cCeEEECCCCCEEEEEE
Confidence 22 2 78999999999999974
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=0.00015 Score=72.06 Aligned_cols=202 Identities=17% Similarity=0.209 Sum_probs=116.8
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+....|+|+|+..+|++.+ ..-+|.||+.+.+..++...-.. -...+..+.-|||+..|++.
T Consensus 259 Pi~~a~f~p~G~~~i~~s~r---------rky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~fia~~------- 321 (514)
T KOG2055|consen 259 PIQKAEFAPNGHSVIFTSGR---------RKYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSNFIAIA------- 321 (514)
T ss_pred ccceeeecCCCceEEEeccc---------ceEEEEeeccccccccccCCCCc-ccchhheeEecCCCCeEEEc-------
Confidence 47788999999977777654 47899999988876666322111 01124477889999987774
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecCCCCceeeeeECCCCcEE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYV 189 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~i 189 (616)
| ..++|.++.. +++ +..+..++.+..+.||.||+.|
T Consensus 322 ------------------G------------------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 322 ------------------G------------------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred ------------------c------------------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 2 1356777766 553 3333344567899999999988
Q ss_pred EEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCc
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (616)
+.... ..++|+||+... ......+- + ......+.-|++|+. ++.-.+.|-.
T Consensus 360 ~~~~~-------------~GeV~v~nl~~~~~~~rf~D~----G--------~v~gts~~~S~ng~y---lA~GS~~GiV 411 (514)
T KOG2055|consen 360 LASGG-------------TGEVYVWNLRQNSCLHRFVDD----G--------SVHGTSLCISLNGSY---LATGSDSGIV 411 (514)
T ss_pred EEEcC-------------CceEEEEecCCcceEEEEeec----C--------ccceeeeeecCCCce---EEeccCcceE
Confidence 87742 247999999754 33332220 0 001124666777761 2211221110
Q ss_pred ccccCCCceeEeccCCCCCCCCceEec---cccccccceeecCCCceEEEeeeccCccEEEEEE
Q 007140 269 NVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~g~~~~l~---~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (616)
.||-.+. -+.++.++.+. +.-..+.++.|++|.+.|+..+.......+|..+
T Consensus 412 --------NIYd~~s-~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 412 --------NIYDGNS-CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV 466 (514)
T ss_pred --------EEeccch-hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec
Confidence 1222111 12333444433 2234567899999998766555444444566554
No 69
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.17 E-value=1.3e-05 Score=83.71 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=70.0
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCC--CccCCCCCchHHHHhhCCeEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP--NEFSGMTPTSSLIFLARRFAV 558 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~la~~Gy~V 558 (616)
..|.|+++..||.+|+|+|++|.. + + |.|+||..++. ++. ..| . ...+.|+++||+|
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~-~--~--~~P~Vli~gG~------------~~~~~~~~---~-~~~~~La~~Gy~v 225 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKG-D--G--PFPTVLVCGGL------------DSLQTDYY---R-LFRDYLAPRGIAM 225 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCC-C--C--CccEEEEeCCc------------ccchhhhH---H-HHHHHHHhCCCEE
Confidence 688899998899899999999973 2 2 34777765220 010 111 1 4467899999999
Q ss_pred EE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 559 LA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 559 l~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
|. |+| |. |+...+.... .......+++++|...+.||++||++.+-
T Consensus 226 l~~D~p-G~-G~s~~~~~~~---d~~~~~~avld~l~~~~~vd~~ri~l~G~ 272 (414)
T PRK05077 226 LTIDMP-SV-GFSSKWKLTQ---DSSLLHQAVLNALPNVPWVDHTRVAAFGF 272 (414)
T ss_pred EEECCC-CC-CCCCCCCccc---cHHHHHHHHHHHHHhCcccCcccEEEEEE
Confidence 99 999 73 5544432111 11122246788999999999999999874
No 70
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.16 E-value=5.7e-05 Score=73.93 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=108.3
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceE---ecccCCCccccccccceEEecCCcEEEEEecCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~---~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~ 108 (616)
.+-...||++|++||-.+. +...-||....+.- .+ .+..+.. .+.-+.||||++.|+-.-.
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~-~kl~~tlvgh~~-----~V~yi~wSPDdryLlaCg~-- 289 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVH-FKLKKTLVGHSQ-----PVSYIMWSPDDRYLLACGF-- 289 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcc-eeeeeeeecccC-----ceEEEEECCCCCeEEecCc--
Confidence 4678899999999998764 34456776665443 22 2212221 2567899999998765311
Q ss_pred CCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecC-CC--CceeeeeECC
Q 007140 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG-TP--AVYTAVEPSP 184 (616)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~-~~--~~~~~~~~Sp 184 (616)
+ ..+++.|+ +|+.+.+. .. ......+|-|
T Consensus 290 --------------------------------------~---------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p 322 (519)
T KOG0293|consen 290 --------------------------------------D---------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP 322 (519)
T ss_pred --------------------------------------h---------HheeeccCCcchhhhhcccCcCCCcceeEEcc
Confidence 0 12455566 55444332 22 2456889999
Q ss_pred CCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCcc-CCCCcceeecCCCceEEEEEee
Q 007140 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR-EGMRSISWRADKPSTLYWVEAQ 263 (616)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~wspdg~~~l~~~~~~ 263 (616)
||.+++..+.+ +.+..+|++|.....- .+++ +....++.++||+. ++.+. .
T Consensus 323 Dg~~~V~Gs~d-------------r~i~~wdlDgn~~~~W-------------~gvr~~~v~dlait~Dgk~-vl~v~-~ 374 (519)
T KOG0293|consen 323 DGFRFVTGSPD-------------RTIIMWDLDGNILGNW-------------EGVRDPKVHDLAITYDGKY-VLLVT-V 374 (519)
T ss_pred CCceeEecCCC-------------CcEEEecCCcchhhcc-------------cccccceeEEEEEcCCCcE-EEEEe-c
Confidence 99998777543 3688888887642110 0111 11235778899985 33331 1
Q ss_pred cCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
...+..++. .....+.+......+..+..|.||+.++..-. .. .+.+.|++.
T Consensus 375 -----------d~~i~l~~~---e~~~dr~lise~~~its~~iS~d~k~~LvnL~--~q--ei~LWDl~e 426 (519)
T KOG0293|consen 375 -----------DKKIRLYNR---EARVDRGLISEEQPITSFSISKDGKLALVNLQ--DQ--EIHLWDLEE 426 (519)
T ss_pred -----------ccceeeech---hhhhhhccccccCceeEEEEcCCCcEEEEEcc--cC--eeEEeecch
Confidence 112333233 22222334455556778889999986433221 12 455556653
No 71
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.14 E-value=0.00084 Score=61.79 Aligned_cols=231 Identities=13% Similarity=0.154 Sum_probs=129.1
Q ss_pred eeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007140 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (616)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l 101 (616)
+.+. .+.. .++.+.+.||++.||-.. ...|.++|+.++++.++.....- ...+....|-.||+++
T Consensus 34 rTiq-h~ds-qVNrLeiTpdk~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~h--~kNVtaVgF~~dgrWM 98 (311)
T KOG0315|consen 34 RTIQ-HPDS-QVNRLEITPDKKDLAAAG-----------NQHVRLYDLNSNNPNPVATFEGH--TKNVTAVGFQCDGRWM 98 (311)
T ss_pred EEEe-cCcc-ceeeEEEcCCcchhhhcc-----------CCeeEEEEccCCCCCceeEEecc--CCceEEEEEeecCeEE
Confidence 3444 3433 688999999999988753 47899999999887555433221 1225567788888887
Q ss_pred EEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-Ce-eecCCCCceee
Q 007140 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TA-KDFGTPAVYTA 179 (616)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~-~~l~~~~~~~~ 179 (616)
+.... + ..+-++|+.. .. +.+.....+..
T Consensus 99 yTgse----------------------D---------------------------gt~kIWdlR~~~~qR~~~~~spVn~ 129 (311)
T KOG0315|consen 99 YTGSE----------------------D---------------------------GTVKIWDLRSLSCQRNYQHNSPVNT 129 (311)
T ss_pred EecCC----------------------C---------------------------ceEEEEeccCcccchhccCCCCcce
Confidence 65311 1 1222333311 11 11222234567
Q ss_pred eeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEE
Q 007140 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (616)
Q Consensus 180 ~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (616)
+.+.|+...|+..... ..|++||+... ...++..- + ......+..-|||+. |+
T Consensus 130 vvlhpnQteLis~dqs-------------g~irvWDl~~~~c~~~liPe----~--------~~~i~sl~v~~dgsm-l~ 183 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQS-------------GNIRVWDLGENSCTHELIPE----D--------DTSIQSLTVMPDGSM-LA 183 (311)
T ss_pred EEecCCcceEEeecCC-------------CcEEEEEccCCccccccCCC----C--------CcceeeEEEcCCCcE-EE
Confidence 8899998777766432 36999998755 33333220 0 011245667788874 32
Q ss_pred EEEeecCCCcccccCCCceeEeccCCCCCCCCc----eEeccc---cccccceeecCCCceEEEeeeccCccEEEEEEeC
Q 007140 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP----EILHKL---DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (616)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~l~~~---~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (616)
- .++++.+|+|+. .+++. ..+... ......-.+|||++.|+..+.. . .+++.+.
T Consensus 184 a------------~nnkG~cyvW~l---~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd--k--tv~iwn~ 244 (311)
T KOG0315|consen 184 A------------ANNKGNCYVWRL---LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD--K--TVKIWNT 244 (311)
T ss_pred E------------ecCCccEEEEEc---cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC--c--eEEEEec
Confidence 2 245677888887 32221 112221 2223456799999998876532 2 3444555
Q ss_pred CCCCCCc-eEEeec--ccccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 332 GSKDVAP-RVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 332 ~~~~~~~-~~l~~~--~~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
++- .+. +.|... -+.+ -++|.||++|+...
T Consensus 245 ~~~-~kle~~l~gh~rWvWd---------c~FS~dg~YlvTas 277 (311)
T KOG0315|consen 245 DDF-FKLELVLTGHQRWVWD---------CAFSADGEYLVTAS 277 (311)
T ss_pred CCc-eeeEEEeecCCceEEe---------eeeccCccEEEecC
Confidence 442 121 222222 2223 46788998876554
No 72
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.14 E-value=0.0029 Score=65.04 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=63.7
Q ss_pred eEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCe
Q 007140 44 RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPK 123 (616)
Q Consensus 44 ~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~ 123 (616)
-|.|+..+ +.++|.++|.++.+........... -....++|||++++...
T Consensus 6 ~l~~V~~~--------~~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~------------------ 55 (369)
T PF02239_consen 6 NLFYVVER--------GSGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVAN------------------ 55 (369)
T ss_dssp GEEEEEEG--------GGTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEE------------------
T ss_pred cEEEEEec--------CCCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEc------------------
Confidence 35666654 4589999999887644332221110 23567899999876641
Q ss_pred eeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecCCCCceeeeeECCCCcEEEEEeccCCCccc
Q 007140 124 IQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYK 201 (616)
Q Consensus 124 ~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~ 201 (616)
....|.++|+ +++ +..+..+....++++||||++|++....
T Consensus 56 -------------------------------rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~------ 98 (369)
T PF02239_consen 56 -------------------------------RDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE------ 98 (369)
T ss_dssp -------------------------------TTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE------
T ss_pred -------------------------------CCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC------
Confidence 0135778888 564 4455555455689999999999877543
Q ss_pred ccCcccCccEEEEeCCCc-eEEEe
Q 007140 202 VPCARFSQKVQVWTTDGK-LVREL 224 (616)
Q Consensus 202 ~~~~~~~~~l~~~d~~~~-~~~~l 224 (616)
+..+.++|.++. ..+.+
T Consensus 99 ------~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 99 ------PGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp ------TTEEEEEETTT--EEEEE
T ss_pred ------CCceeEeccccccceeec
Confidence 347889998754 34444
No 73
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.13 E-value=8.2e-06 Score=89.04 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=69.8
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCc
Q 007140 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 488 ~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS 566 (616)
+.+||.+|.+.+++|.+- .|.|+||+.+|- +........+ .....++|+++||+|+. |+| |.
T Consensus 2 ~~~DG~~L~~~~~~P~~~-----~~~P~Il~~~gy--------g~~~~~~~~~---~~~~~~~l~~~Gy~vv~~D~R-G~ 64 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAGG-----GPVPVILSRTPY--------GKDAGLRWGL---DKTEPAWFVAQGYAVVIQDTR-GR 64 (550)
T ss_pred cCCCCCEEEEEEEecCCC-----CCCCEEEEecCC--------CCchhhcccc---ccccHHHHHhCCcEEEEEecc-cc
Confidence 468999999999999752 135888876431 0000000011 11345789999999999 999 86
Q ss_pred cccCCCccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 567 ~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
.+-+..+. .++..+.+|+.++++||.++++.| .||++.+.
T Consensus 65 g~S~g~~~--~~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~ 104 (550)
T TIGR00976 65 GASEGEFD--LLGSDEAADGYDLVDWIAKQPWCD-GNVGMLGV 104 (550)
T ss_pred ccCCCceE--ecCcccchHHHHHHHHHHhCCCCC-CcEEEEEe
Confidence 44433322 222468999999999999999888 69999874
No 74
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.11 E-value=0.0016 Score=66.94 Aligned_cols=129 Identities=17% Similarity=0.141 Sum_probs=67.5
Q ss_pred CCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCcc---ccccccceEEecCCcEEEE
Q 007140 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC---LNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~---~~~~~~~~~wspdg~~l~~ 103 (616)
+..+.......+||||++|+- ++. ..+++-++|.++.+..+........ ....+..+.-+|....+++
T Consensus 74 i~~G~~~~~i~~s~DG~~~~v-~n~--------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 74 IKVGGNPRGIAVSPDGKYVYV-ANY--------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EE-SSEEEEEEE--TTTEEEE-EEE--------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EecCCCcceEEEcCCCCEEEE-Eec--------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 344445778999999998754 432 2478999999887755432111100 0001112233344333222
Q ss_pred EecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCC-CC---eeecCCCCceee
Q 007140 104 TIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GT---AKDFGTPAVYTA 179 (616)
Q Consensus 104 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~-g~---~~~l~~~~~~~~ 179 (616)
.. ....++|++|.+ .+ .+.+..+....+
T Consensus 145 ~l------------------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 145 NL------------------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp EE------------------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred EE------------------------------------------------ccCCeEEEEEeccccccceeeecccccccc
Confidence 10 024678888873 32 223334445568
Q ss_pred eeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEe
Q 007140 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (616)
Q Consensus 180 ~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (616)
..|+|||++++...+.. ..+-++|.+.++...+
T Consensus 177 ~~~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGS------------NKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEE-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEE
T ss_pred cccCcccceeeeccccc------------ceeEEEeeccceEEEE
Confidence 99999999998876542 3678888876654443
No 75
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.09 E-value=8e-05 Score=70.92 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=83.6
Q ss_pred ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCC
Q 007140 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (616)
Q Consensus 35 ~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~ 114 (616)
--.|||+|++||-++. ..|.+.|..+=+..+++..- ..+.-+.|+.|+.+++.....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cl-----dki~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCL-----DKIVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHH-----HHhhheeeeccceeeeeeeec-------
Confidence 4589999999999874 47888887776655554221 125578999999988775211
Q ss_pred CcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-Cee-ecCCC-CceeeeeECCCCcEEEE
Q 007140 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGTP-AVYTAVEPSPDQKYVLI 191 (616)
Q Consensus 115 ~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~-~l~~~-~~~~~~~~SpDg~~i~~ 191 (616)
...+.++++.. +.. .|-.+ +..+.+.|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 12333444422 222 12222 35678999999999997
Q ss_pred EeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
++. +..+|-+|.+.+++...+.. | ..+...+.+.|||+
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~-p------------K~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPH-P------------KTNVKGYAFHPDGQ 146 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEecc-c------------ccCceeEEECCCCc
Confidence 753 23467788887766555432 1 22334678899998
No 76
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.07 E-value=0.00031 Score=69.25 Aligned_cols=194 Identities=18% Similarity=0.173 Sum_probs=106.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCC--cEEEEEecCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS--TLLIFTIPSSR 109 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg--~~l~~~~~~~~ 109 (616)
.+....||+||++||-.+= +|...|| +.......+....... .++...|.|.. ..|+..+.+
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW--~~~~~~~~~~l~gH~~----~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVW--SVPQCNLLQTLRGHTS----RVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEe--ecCCcceeEEEecccc----ceeeEEEccCCCccceeeeccC--
Confidence 3567799999999887653 4566666 5555554444432222 26788999973 334442110
Q ss_pred CCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCCCeeecC-CCCceeeeeECCCCcE
Q 007140 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFG-TPAVYTAVEPSPDQKY 188 (616)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g~~~~l~-~~~~~~~~~~SpDg~~ 188 (616)
| ...||.++-+..+.+|+ ....+..++|.|+|++
T Consensus 241 --------------------g-------------------------tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 241 --------------------G-------------------------TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred --------------------C-------------------------ceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 1 12333333222233343 2235678999999999
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCc
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (616)
|.-.+.+.. -.+||+.++..-.+.+ +...+..+++|.|||. |+-..-.|
T Consensus 276 L~TasfD~t-------------WRlWD~~tk~ElL~QE------------GHs~~v~~iaf~~DGS--L~~tGGlD---- 324 (459)
T KOG0272|consen 276 LGTASFDST-------------WRLWDLETKSELLLQE------------GHSKGVFSIAFQPDGS--LAATGGLD---- 324 (459)
T ss_pred eeecccccc-------------hhhcccccchhhHhhc------------ccccccceeEecCCCc--eeeccCcc----
Confidence 987765432 3377888765433322 2234456789999997 33221111
Q ss_pred ccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCceEEEeeeccCccEEEEEE
Q 007140 269 NVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (616)
..-.+||. -+|... .|....-.+..+.|||+|..++..+. +..-++|-+
T Consensus 325 -------~~~RvWDl---Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDL 374 (459)
T KOG0272|consen 325 -------SLGRVWDL---RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDL 374 (459)
T ss_pred -------chhheeec---ccCcEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeee
Confidence 11122333 222221 12222334567899999998876542 233456554
No 77
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=0.00069 Score=67.60 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=127.1
Q ss_pred CCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007140 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (616)
Q Consensus 30 ~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (616)
...++...|.|.-.. +.+..- ++...||-+|-+.. ..|+...-. .-.+....|.|+|+..+|++
T Consensus 213 ~~~I~sv~FHp~~pl-llvaG~-------d~~lrifqvDGk~N--~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s---- 276 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPL-LLVAGL-------DGTLRIFQVDGKVN--PKLQSIHLE--KFPIQKAEFAPNGHSVIFTS---- 276 (514)
T ss_pred cCCceEEEecCCCce-EEEecC-------CCcEEEEEecCccC--hhheeeeec--cCccceeeecCCCceEEEec----
Confidence 336889999998774 444433 45667776653333 244322100 01145778999999666641
Q ss_pred CCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCC-----CceeeeeEC
Q 007140 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-----AVYTAVEPS 183 (616)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~-----~~~~~~~~S 183 (616)
+ .+..+|.+|+ ++++.+|... .....++.|
T Consensus 277 --------------------~------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVS 312 (514)
T KOG2055|consen 277 --------------------G------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVS 312 (514)
T ss_pred --------------------c------------------------cceEEEEeeccccccccccCCCCcccchhheeEec
Confidence 1 1246788999 6676665432 245689999
Q ss_pred CCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCC-CCcceeecCCCceEEEEEe
Q 007140 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSISWRADKPSTLYWVEA 262 (616)
Q Consensus 184 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~wspdg~~~l~~~~~ 262 (616)
||+++|++..... -|.++..++++ .|+.+.. .| ..++.|+.||+. |+..
T Consensus 313 hd~~fia~~G~~G-------------~I~lLhakT~e--li~s~Ki------------eG~v~~~~fsSdsk~-l~~~-- 362 (514)
T KOG2055|consen 313 HDSNFIAIAGNNG-------------HIHLLHAKTKE--LITSFKI------------EGVVSDFTFSSDSKE-LLAS-- 362 (514)
T ss_pred CCCCeEEEcccCc-------------eEEeehhhhhh--hhheeee------------ccEEeeEEEecCCcE-EEEE--
Confidence 9999999885432 35566555543 2222111 11 246889999973 4322
Q ss_pred ecCCCcccccCCCceeEeccCCCCCCCCceEec--ccccc--ccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCc
Q 007140 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLR--FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAP 338 (616)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~--~~~~~--~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~ 338 (616)
...+.+|+|++ . +..-+. ..++. ...+.-|.+|.+|+..+ +.+-..||-.+-.-.+..|
T Consensus 363 ----------~~~GeV~v~nl---~--~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS--~~GiVNIYd~~s~~~s~~P 425 (514)
T KOG2055|consen 363 ----------GGTGEVYVWNL---R--QNSCLHRFVDDGSVHGTSLCISLNGSYLATGS--DSGIVNIYDGNSCFASTNP 425 (514)
T ss_pred ----------cCCceEEEEec---C--CcceEEEEeecCccceeeeeecCCCceEEecc--CcceEEEeccchhhccCCC
Confidence 22346777776 2 222222 12222 23456678888777654 2354556553321111345
Q ss_pred eEEeec-ccccccCCCCCCCeeeCCCCCEEEEEee
Q 007140 339 RVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 339 ~~l~~~-~~~~~~~~~g~~~~~~s~dgk~l~~~~~ 372 (616)
+.+... +....+ ..+.+++|++.+++.+.
T Consensus 426 kPik~~dNLtt~I-----tsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 426 KPIKTVDNLTTAI-----TSLQFNHDAQILAIASR 455 (514)
T ss_pred Cchhhhhhhheee-----eeeeeCcchhhhhhhhh
Confidence 554211 111111 22899999988777654
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.04 E-value=0.0035 Score=58.30 Aligned_cols=225 Identities=14% Similarity=0.205 Sum_probs=114.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+..+.|+-||.+||-.+. ++...+| +++.+ +.++.....+-...+.++.|.|...-+++++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~--n~e~~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVW--NLERD--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEE--Eecch--hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 4779999999999998764 3444555 55444 333222211112235688898765545554221
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCee-ecCCCCceeeeeECCCCcEE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYV 189 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~-~l~~~~~~~~~~~SpDg~~i 189 (616)
...+.++|. .++.. ++.....-..+.|||+|+++
T Consensus 86 --------------------------------------------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~ 121 (313)
T KOG1407|consen 86 --------------------------------------------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYI 121 (313)
T ss_pred --------------------------------------------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEE
Confidence 123445555 55433 23222223468999999999
Q ss_pred EEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcc
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~ 269 (616)
++...+. .|-.+|...-+...-.. ++ .......|.-++. ++|+.. ..|
T Consensus 122 ~~~~kdD-------------~it~id~r~~~~~~~~~------~~-------~e~ne~~w~~~nd--~Fflt~-GlG--- 169 (313)
T KOG1407|consen 122 AVGNKDD-------------RITFIDARTYKIVNEEQ------FK-------FEVNEISWNNSND--LFFLTN-GLG--- 169 (313)
T ss_pred EEecCcc-------------cEEEEEecccceeehhc------cc-------ceeeeeeecCCCC--EEEEec-CCc---
Confidence 9985432 45556654332221111 10 1112466764443 666521 101
Q ss_pred cccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEe--ecccc
Q 007140 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVFE 347 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~--~~~~~ 347 (616)
.-+|+.++. - .....|.......-.+.|+|+|++|+..+.. ....||- ++.- .=.|.+. +..+.
T Consensus 170 -----~v~ILsyps---L-kpv~si~AH~snCicI~f~p~GryfA~GsAD--AlvSLWD--~~EL-iC~R~isRldwpVR 235 (313)
T KOG1407|consen 170 -----CVEILSYPS---L-KPVQSIKAHPSNCICIEFDPDGRYFATGSAD--ALVSLWD--VDEL-ICERCISRLDWPVR 235 (313)
T ss_pred -----eEEEEeccc---c-ccccccccCCcceEEEEECCCCceEeecccc--ceeeccC--hhHh-hhheeeccccCceE
Confidence 012222221 1 1222344445556678999999998765421 2234443 3320 0123332 23232
Q ss_pred cccCCCCCCCeeeCCCCCEEEEEe
Q 007140 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 348 ~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
. +++|-||+.|+-.+
T Consensus 236 T---------lSFS~dg~~lASaS 250 (313)
T KOG1407|consen 236 T---------LSFSHDGRMLASAS 250 (313)
T ss_pred E---------EEeccCcceeeccC
Confidence 2 88999999876544
No 79
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.03 E-value=0.00022 Score=68.00 Aligned_cols=59 Identities=19% Similarity=0.356 Sum_probs=43.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
..+..+|||||++|.-.+.. ...|-|+.+.+.+...+-..+. + +..+++.|||+..+..
T Consensus 93 gls~~~WSPdgrhiL~tseF---------~lriTVWSL~t~~~~~~~~pK~-~----~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEF---------DLRITVWSLNTQKGYLLPHPKT-N----VKGYAFHPDGQFCAIL 151 (447)
T ss_pred cceeeeECCCcceEeeeecc---------eeEEEEEEeccceeEEeccccc-C----ceeEEECCCCceeeee
Confidence 47899999999999998865 3556666776666555533332 2 5789999999976664
No 80
>PRK13604 luxD acyl transferase; Provisional
Probab=98.02 E-value=2.8e-05 Score=76.25 Aligned_cols=98 Identities=11% Similarity=-0.004 Sum_probs=63.7
Q ss_pred EEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCC
Q 007140 486 KYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSI 564 (616)
Q Consensus 486 ~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~ 564 (616)
..++.||.+|.||+..|.+-++ ++. |+||..++ .+++..+ +. ....+|+++||+||. |+|
T Consensus 13 ~~~~~dG~~L~Gwl~~P~~~~~-~~~--~~vIi~HG------------f~~~~~~--~~-~~A~~La~~G~~vLrfD~r- 73 (307)
T PRK13604 13 VICLENGQSIRVWETLPKENSP-KKN--NTILIASG------------FARRMDH--FA-GLAEYLSSNGFHVIRYDSL- 73 (307)
T ss_pred eEEcCCCCEEEEEEEcCcccCC-CCC--CEEEEeCC------------CCCChHH--HH-HHHHHHHHCCCEEEEecCC-
Confidence 3456799999999999986433 223 66666622 1111111 01 457899999999999 998
Q ss_pred Ccccc-CCCccC--ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 565 PIIGE-GDKLPN--DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 565 GS~Gy-G~~f~~--~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
|..|- +.+|.. -.. ..+|+.++++||.++ +.++|++-+
T Consensus 74 g~~GeS~G~~~~~t~s~---g~~Dl~aaid~lk~~---~~~~I~LiG 114 (307)
T PRK13604 74 HHVGLSSGTIDEFTMSI---GKNSLLTVVDWLNTR---GINNLGLIA 114 (307)
T ss_pred CCCCCCCCccccCcccc---cHHHHHHHHHHHHhc---CCCceEEEE
Confidence 65332 233432 122 369999999999876 346788755
No 81
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.00 E-value=2.5e-05 Score=84.52 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=65.1
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhC-C-eEEEE-CCCCCcc
Q 007140 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR-R-FAVLA-GPSIPII 567 (616)
Q Consensus 491 DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~-G-y~Vl~-n~R~GS~ 567 (616)
|-+.| -++.|.+..++++ +|||||+|+|.+. .|+...+ ....|+.+ + ++|+. |||.|+.
T Consensus 77 dcl~l--~i~~p~~~~~~~~--~pv~v~ihGG~~~--------~g~~~~~------~~~~~~~~~~~~~vv~~~yRlg~~ 138 (493)
T cd00312 77 DCLYL--NVYTPKNTKPGNS--LPVMVWIHGGGFM--------FGSGSLY------PGDGLAREGDNVIVVSINYRLGVL 138 (493)
T ss_pred cCCeE--EEEeCCCCCCCCC--CCEEEEEcCCccc--------cCCCCCC------ChHHHHhcCCCEEEEEeccccccc
Confidence 44444 6888987654443 5999999554322 2221111 23445554 3 99999 9999999
Q ss_pred ccCCCccC---ChhHHHHHHHHHHHHHHHHHc----CCccCCceEEEe
Q 007140 568 GEGDKLPN---DRFVEQLVSSAEAAVEEVVRR----GVGLPILYLNTT 608 (616)
Q Consensus 568 GyG~~f~~---~~~g~~~~~D~~~~v~~l~~~----~~vD~~ri~~~~ 608 (616)
||...... +++| +.|+..|++|+.+. | .||+||.|.+
T Consensus 139 g~~~~~~~~~~~n~g---~~D~~~al~wv~~~i~~fg-gd~~~v~~~G 182 (493)
T cd00312 139 GFLSTGDIELPGNYG---LKDQRLALKWVQDNIAAFG-GDPDSVTIFG 182 (493)
T ss_pred ccccCCCCCCCcchh---HHHHHHHHHHHHHHHHHhC-CCcceEEEEe
Confidence 99876543 4554 78999999998765 3 7999999976
No 82
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.94 E-value=0.00016 Score=71.25 Aligned_cols=191 Identities=16% Similarity=0.191 Sum_probs=106.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
++..++|.|+|++|+-.+- +..-.|| |+.+++.-.+- ... ...+..++|-+||..++.-
T Consensus 263 RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~Q-EGH---s~~v~~iaf~~DGSL~~tG------- 321 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQ-EGH---SKGVFSIAFQPDGSLAATG------- 321 (459)
T ss_pred hheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhh-ccc---ccccceeEecCCCceeecc-------
Confidence 5889999999999887653 3345555 88887644432 221 1226689999999865441
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CC-CeeecC-CCCceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFG-TPAVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g-~~~~l~-~~~~~~~~~~SpDg~~ 188 (616)
| .| ...+ ++|+ +| .+.-|. ..+.+.+++|||+|-.
T Consensus 322 ------------------G---------------lD-------~~~R--vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 322 ------------------G---------------LD-------SLGR--VWDLRTGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred ------------------C---------------cc-------chhh--eeecccCcEEEEecccccceeeEeECCCceE
Confidence 1 00 0112 2344 44 233332 2234568999999999
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCc
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~ 268 (616)
|+-.+.+. ..-+||+..... +..+|...+ -+..+.++|++..-|+-.
T Consensus 360 lATgs~Dn-------------t~kVWDLR~r~~--ly~ipAH~n----------lVS~Vk~~p~~g~fL~Ta-------- 406 (459)
T KOG0272|consen 360 LATGSSDN-------------TCKVWDLRMRSE--LYTIPAHSN----------LVSQVKYSPQEGYFLVTA-------- 406 (459)
T ss_pred EeecCCCC-------------cEEEeeeccccc--ceecccccc----------hhhheEecccCCeEEEEc--------
Confidence 88665432 466788764422 222221111 123577888544322221
Q ss_pred ccccCCCceeEeccCCCCCCC-CceEeccccccccceeecCCCceEEEeeeccCccEEEE
Q 007140 269 NVEVSPRDIIYTQPAEPAEGE-KPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~g-~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~ 327 (616)
...+.+-+|.. .+. ..+.|......+.....|+|+..++..++. +..+||
T Consensus 407 ----syD~t~kiWs~---~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW 457 (459)
T KOG0272|consen 407 ----SYDNTVKIWST---RTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD--RTIKLW 457 (459)
T ss_pred ----ccCcceeeecC---CCcccchhhcCCccceEEEEeccCCceEEEeccC--ceeeec
Confidence 12233333443 222 233466666777788899999987776533 223555
No 83
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.94 E-value=0.0018 Score=64.94 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=136.8
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+..+.|+-||..||+-+. ...+.+|+..++-...+.+++. + +-.+.|..+|.+|+-...+....
T Consensus 237 dVT~L~Wn~~G~~LatG~~----------~G~~riw~~~G~l~~tl~~Hkg-P----I~slKWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSE----------DGEARIWNKDGNLISTLGQHKG-P----IFSLKWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred CcceEEecCCCCeEEEeec----------CcEEEEEecCchhhhhhhccCC-c----eEEEEEcCCCCEEEeccCCccEE
Confidence 5789999999999998653 3456666877665555555543 2 55789999999887742222111
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeE-eccceEEEEeCCC-C-ee-ecCCCCceeeeeECCCCc
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDY-YTTAQLVLGSLDG-T-AK-DFGTPAVYTAVEPSPDQK 187 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~-~~~~~l~~~d~~g-~-~~-~l~~~~~~~~~~~SpDg~ 187 (616)
. .+.-.|...+.-.-. ..+ . .|.-+ .+..-|.- .....|+++-+.+ . +. .+.+...+..+.|.|-|+
T Consensus 302 l---wd~~~g~~~q~f~~~-s~~--~-lDVdW--~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~ 372 (524)
T KOG0273|consen 302 L---WDAHTGTVKQQFEFH-SAP--A-LDVDW--QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS 372 (524)
T ss_pred E---EeccCceEEEeeeec-cCC--c-cceEE--ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc
Confidence 0 000001000000000 000 0 00000 00011111 1334577777744 2 22 234444567899999998
Q ss_pred EEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCC
Q 007140 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (616)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (616)
-|+-.+.+. .+-+|+.. +.....+... ......+.|||+|+. ...+..+
T Consensus 373 LLaS~SdD~-------------TlkiWs~~~~~~~~~l~~H-------------skei~t~~wsp~g~v----~~n~~~~ 422 (524)
T KOG0273|consen 373 LLASCSDDG-------------TLKIWSMGQSNSVHDLQAH-------------SKEIYTIKWSPTGPV----TSNPNMN 422 (524)
T ss_pred eEEEecCCC-------------eeEeeecCCCcchhhhhhh-------------ccceeeEeecCCCCc----cCCCcCC
Confidence 777665432 34455532 2222111110 011235788888872 1111111
Q ss_pred CcccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecc
Q 007140 267 DANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRV 345 (616)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~ 345 (616)
.........+.+.+|++ ..|.+. .+......+..++|||||+++++.+.. + .+.+.+..+++ -.+...+..
T Consensus 423 ~~l~sas~dstV~lwdv---~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d--g--~V~iws~~~~~-l~~s~~~~~ 494 (524)
T KOG0273|consen 423 LMLASASFDSTVKLWDV---ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD--G--CVHIWSTKTGK-LVKSYQGTG 494 (524)
T ss_pred ceEEEeecCCeEEEEEc---cCCceeEeeccCCCceEEEEecCCCcEEEecCCC--C--eeEeccccchh-eeEeecCCC
Confidence 11122233456666777 544443 455666778889999999998876532 3 34444444421 111111111
Q ss_pred cccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 346 FENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 346 ~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
+...++|+.+|..|....
T Consensus 495 --------~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 495 --------GIFELCWNAAGDKLGACA 512 (524)
T ss_pred --------eEEEEEEcCCCCEEEEEe
Confidence 113489999998877655
No 84
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.0012 Score=70.21 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=109.8
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc---eEecccCCCccccccccceEEecCCcEEEEEecCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~ 108 (616)
.+....|||||+.++.... + ..+.++++.+++ .+.+..+. ..+..+.|||||+.|+-...
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~--~~i~~~~~~~~~~~~~~~l~~h~-----~~v~~~~fs~d~~~l~s~s~-- 223 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------D--GLIRIWKLEGIKSNLLRELSGHT-----RGVSDVAFSPDGSYLLSGSD-- 223 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------C--CcEEEeecccccchhhccccccc-----cceeeeEECCCCcEEEEecC--
Confidence 4667899999999888754 2 344444554444 12221111 12668999999996555311
Q ss_pred CCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CC--Ceeec-CCCCceeeeeECC
Q 007140 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG--TAKDF-GTPAVYTAVEPSP 184 (616)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g--~~~~l-~~~~~~~~~~~Sp 184 (616)
..+|.++|+ .. ..+.| .....+..++|+|
T Consensus 224 -----------------------------------------------D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 224 -----------------------------------------------DKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred -----------------------------------------------CceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 134555666 32 23444 3444678999999
Q ss_pred CCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEee
Q 007140 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQ 263 (616)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~ 263 (616)
+|+.|+..+.+ ..+.+||+.++ ..+.|... ..+.....+++||.. +..
T Consensus 257 ~g~~i~Sgs~D-------------~tvriWd~~~~~~~~~l~~h-------------s~~is~~~f~~d~~~--l~s--- 305 (456)
T KOG0266|consen 257 DGNLLVSGSDD-------------GTVRIWDVRTGECVRKLKGH-------------SDGISGLAFSPDGNL--LVS--- 305 (456)
T ss_pred CCCEEEEecCC-------------CcEEEEeccCCeEEEeeecc-------------CCceEEEEECCCCCE--EEE---
Confidence 99666655433 36889999864 45555431 112335778888873 222
Q ss_pred cCCCcccccCCCceeEeccCCCCCCCCc---eEeccccc--cccceeecCCCceEEEeeeccCccEEEEEE
Q 007140 264 DRGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL--RFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (616)
Q Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~l~~~~~--~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (616)
......+.+||. .++.. +.+..... ......|+|++++++... .++..+||-+
T Consensus 306 --------~s~d~~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~--~d~~~~~w~l 363 (456)
T KOG0266|consen 306 --------ASYDGTIRVWDL---ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS--LDRTLKLWDL 363 (456)
T ss_pred --------cCCCccEEEEEC---CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec--CCCeEEEEEc
Confidence 122346777787 55552 23333222 357789999999866543 2233345444
No 85
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.83 E-value=0.00026 Score=68.42 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=51.9
Q ss_pred CCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecC
Q 007140 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (616)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspd 97 (616)
++..+.+. .+....+...+|.+||..++-.+ -+...|-++++++|...+|--...++ ++.+.||||
T Consensus 184 ~~~~qvl~-~pgh~pVtsmqwn~dgt~l~tAS---------~gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPd 249 (445)
T KOG2139|consen 184 THHLQVLQ-DPGHNPVTSMQWNEDGTILVTAS---------FGSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPD 249 (445)
T ss_pred ccchhhee-CCCCceeeEEEEcCCCCEEeecc---------cCcceEEEEcCCCCCcccccccCCCc----eeeEEEcCC
Confidence 34454454 45555688999999999877654 34678889999999877774222222 678999999
Q ss_pred CcEEEEE
Q 007140 98 STLLIFT 104 (616)
Q Consensus 98 g~~l~~~ 104 (616)
|..|+-.
T Consensus 250 gd~lfaA 256 (445)
T KOG2139|consen 250 GDVLFAA 256 (445)
T ss_pred CCEEEEe
Confidence 9987664
No 86
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.81 E-value=4.1e-05 Score=50.40 Aligned_cols=38 Identities=26% Similarity=0.573 Sum_probs=26.6
Q ss_pred eeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEE
Q 007140 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (616)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v 66 (616)
+++|..+. ....|.|||||++|+|++++.. .+..+||+
T Consensus 2 ~~~t~~~~--~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPG--DDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES-SSS--SEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCcccCCc--cccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 45663333 5889999999999999998721 26788885
No 87
>PRK10566 esterase; Provisional
Probab=97.81 E-value=0.00011 Score=71.61 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=63.8
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCcc
Q 007140 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPII 567 (616)
Q Consensus 489 ~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~ 567 (616)
+.....+...+|.|.+.. +++ .|+||+.|+. .++...| . ...+.|+++||.|+. |+| |.
T Consensus 6 ~~~~~~~~~~~~~p~~~~-~~~--~p~vv~~HG~-----------~~~~~~~---~-~~~~~l~~~G~~v~~~d~~-g~- 65 (249)
T PRK10566 6 TRELAGIEVLHAFPAGQR-DTP--LPTVFFYHGF-----------TSSKLVY---S-YFAVALAQAGFRVIMPDAP-MH- 65 (249)
T ss_pred EEEecCcceEEEcCCCCC-CCC--CCEEEEeCCC-----------CcccchH---H-HHHHHHHhCCCEEEEecCC-cc-
Confidence 333345556778897532 222 3888888331 0011122 1 457889999999999 999 74
Q ss_pred ccCCCccC------Ch-hH--HHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 568 GEGDKLPN------DR-FV--EQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 568 GyG~~f~~------~~-~g--~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
|..+.. .. |. ....+|+.++++++.+++.+|++||+|-+-
T Consensus 66 --G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~ 114 (249)
T PRK10566 66 --GARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGA 114 (249)
T ss_pred --cccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEee
Confidence 332211 12 22 245788999999999999999999999764
No 88
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.016 Score=59.51 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCcccceEEccCCCeEEEEEeec-cccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 30 GAKINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 30 ~~~~~~~~~SPDG~~iaf~~~~~-~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
++.+....|||.-++|.--+... ..+..++...+|.++|+++|...+-+...... .....-+.||.|++.++.+
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEe
Confidence 34578899999999876654331 00001245689999999999766554332111 0113468999999988876
No 89
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.73 E-value=0.029 Score=59.84 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=39.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....+||||+.||--.. ++ .|-+||..+|-...-+...... +..+.|+..|+.|+..
T Consensus 352 ~i~~l~YSpDgq~iaTG~e--------Dg--KVKvWn~~SgfC~vTFteHts~----Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAE--------DG--KVKVWNTQSGFCFVTFTEHTSG----VTAVQFTARGNVLLSS 410 (893)
T ss_pred ceeeEEECCCCcEEEeccC--------CC--cEEEEeccCceEEEEeccCCCc----eEEEEEEecCCEEEEe
Confidence 4778999999999886542 34 4455588777654333222212 6789999999977664
No 90
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.72 E-value=0.00031 Score=67.35 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=73.4
Q ss_pred eeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-
Q 007140 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA- 560 (616)
Q Consensus 482 ~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~- 560 (616)
.+.+++.+.| .++.|++.+|.+-.+ + |+||.++. ..|-+.+ .. -....||++||+|+.
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~~~----~-P~VIv~he------------i~Gl~~~--i~-~~a~rlA~~Gy~v~~P 60 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGAGG----F-PGVIVLHE------------IFGLNPH--IR-DVARRLAKAGYVVLAP 60 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcCCC----C-CEEEEEec------------ccCCchH--HH-HHHHHHHhCCcEEEec
Confidence 3457787766 999999999988543 2 77877732 1111111 00 335789999999999
Q ss_pred CCCCCccccCCCccC--ChhH---------HHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 561 GPSIPIIGEGDKLPN--DRFV---------EQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 561 n~R~GS~GyG~~f~~--~~~g---------~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
|.= +..|....+.. .... .....|+.++++||..++.+|++|||+++=
T Consensus 61 dl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~Gf 119 (236)
T COG0412 61 DLY-GRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGF 119 (236)
T ss_pred hhh-ccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEE
Confidence 876 54444444442 1111 467799999999999999999999999973
No 91
>PTZ00421 coronin; Provisional
Probab=97.68 E-value=0.051 Score=58.11 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=74.2
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce-EEEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
.+..++|+|++..++++... ...|.+||+..++ ...+... ......+.|+|||.
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~~~~~l~~h-------------~~~V~sla~spdG~ 181 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGKAVEVIKCH-------------SDQITSLEWNLDGS 181 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCeEEEEEcCC-------------CCceEEEEEECCCC
Confidence 46689999997544444332 2368899987554 3333221 01134688999997
Q ss_pred ceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-Eecccc-ccccceeecCCCceEEEeee--ccCccEEEEEEe
Q 007140 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLD-LRFRSVSWCDDSLALVNETW--YKTSQTRTWLVC 330 (616)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~-~~~~~~~wspDg~~l~~~~~--~~~~~~~l~~~d 330 (616)
. |+-. .....+.+||. ..++.. .+.... .......|.+++..++.... ..++ .|.++|
T Consensus 182 l-Latg------------s~Dg~IrIwD~---rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr--~VklWD 243 (493)
T PTZ00421 182 L-LCTT------------SKDKKLNIIDP---RDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR--QIMLWD 243 (493)
T ss_pred E-EEEe------------cCCCEEEEEEC---CCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC--eEEEEe
Confidence 2 3221 12235666675 333322 232222 22345779988665543221 1123 466667
Q ss_pred CCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 331 PGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
+.... .+..+...+.. .+...+.|++|++.++...
T Consensus 244 lr~~~-~p~~~~~~d~~-----~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 244 TRKMA-SPYSTVDLDQS-----SALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred CCCCC-CceeEeccCCC-----CceEEEEEcCCCCEEEEEE
Confidence 76531 22222211110 1112356788988777654
No 92
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.66 E-value=0.00012 Score=69.46 Aligned_cols=96 Identities=10% Similarity=-0.064 Sum_probs=62.3
Q ss_pred EEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCc--
Q 007140 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKL-- 573 (616)
Q Consensus 497 g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f-- 573 (616)
++||+|++++ +++ |+||+.|+.. +....+.. .+.+.+++.+.||+|+. |+| |+.+.+..|
T Consensus 1 ~~ly~P~~~~--~~~--P~vv~lHG~~-----------~~~~~~~~-~~~~~~~a~~~g~~Vv~Pd~~-g~~~~~~~~~~ 63 (212)
T TIGR01840 1 MYVYVPAGLT--GPR--ALVLALHGCG-----------QTASAYVI-DWGWKAAADRYGFVLVAPEQT-SYNSSNNCWDW 63 (212)
T ss_pred CEEEcCCCCC--CCC--CEEEEeCCCC-----------CCHHHHhh-hcChHHHHHhCCeEEEecCCc-CccccCCCCCC
Confidence 4799999864 234 8888884311 00012210 01235666678999999 999 876544332
Q ss_pred cC---ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 574 PN---DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 574 ~~---~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
.. ...+..+..|+...++++.++..+|++||+|.+-
T Consensus 64 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~ 102 (212)
T TIGR01840 64 FFTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGL 102 (212)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEE
Confidence 11 1223457889999999999887799999998863
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.66 E-value=0.017 Score=53.93 Aligned_cols=59 Identities=12% Similarity=0.274 Sum_probs=43.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+.+..|+|-..-+.++.. +...|.++|...+++...+....+ .-...|||+|+++++.
T Consensus 66 svdql~w~~~~~d~~atas---------~dk~ir~wd~r~~k~~~~i~~~~e-----ni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATAS---------GDKTIRIWDIRSGKCTARIETKGE-----NINITWSPDGEYIAVG 124 (313)
T ss_pred chhhheeCCCCCcceEEec---------CCceEEEEEeccCcEEEEeeccCc-----ceEEEEcCCCCEEEEe
Confidence 4668899997777777664 346777889999987766655432 2367999999999885
No 94
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.66 E-value=0.00014 Score=76.44 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=70.5
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEec----ccCcccccccCCcccCCCCccCCCCC--chHHHHhhC
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWA----YPEDYKSKDAAGQVRGSPNEFSGMTP--TSSLIFLAR 554 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~la~~ 554 (616)
....+.++-+||.+|..-||+|++-. |+||++.- |... .+ .+..... ...++||++
T Consensus 18 ~~~~v~V~MRDGvrL~~dIy~Pa~~g-----~~Pvll~~~~~Py~k~-----------~~--~~~~~~~~~p~~~~~aa~ 79 (563)
T COG2936 18 IERDVMVPMRDGVRLAADIYRPAGAG-----PLPVLLSRTRLPYRKR-----------NG--TFGPQLSALPQPAWFAAQ 79 (563)
T ss_pred eeeeeeEEecCCeEEEEEEEccCCCC-----CCceeEEeeccccccc-----------cc--cCcchhhcccccceeecC
Confidence 33446777789999999999998762 33666554 3210 00 1111111 112489999
Q ss_pred CeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 555 RFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 555 Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
||+|+. |-| |+.+-.-.|. -++..+.+|=.+.++||++|++-+ .+||-.+
T Consensus 80 GYavV~qDvR-G~~~SeG~~~--~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G 130 (563)
T COG2936 80 GYAVVNQDVR-GRGGSEGVFD--PESSREAEDGYDTIEWLAKQPWSN-GNVGMLG 130 (563)
T ss_pred ceEEEEeccc-ccccCCcccc--eeccccccchhHHHHHHHhCCccC-Ceeeeec
Confidence 999999 999 8744333332 223368999999999999999988 6676554
No 95
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.025 Score=54.16 Aligned_cols=101 Identities=19% Similarity=0.189 Sum_probs=58.3
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
....++||||||.|+++++. ..++++|.= |.....+...+.....| -...++||++
T Consensus 189 ew~~l~FS~dGK~iLlsT~~-------------s~~~~lDAf~G~~~~tfs~~~~~~~~~----------~~a~ftPds~ 245 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTNA-------------SFIYLLDAFDGTVKSTFSGYPNAGNLP----------LSATFTPDSK 245 (311)
T ss_pred ceeeeEEcCCCCEEEEEeCC-------------CcEEEEEccCCcEeeeEeeccCCCCcc----------eeEEECCCCc
Confidence 46789999999999999753 257888864 44333344333222211 1467899998
Q ss_pred ceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccc--cccccceeecCCCceEEE
Q 007140 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLALVN 315 (616)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~--~~~~~~~~wspDg~~l~~ 315 (616)
. ++.. ...+.+++|++ ..|........ ......+.|.|--..++.
T Consensus 246 F--vl~g-----------s~dg~i~vw~~---~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~s 292 (311)
T KOG1446|consen 246 F--VLSG-----------SDDGTIHVWNL---ETGKKVAVLRGPNGGPVSCVRFNPRYAMFVS 292 (311)
T ss_pred E--EEEe-----------cCCCcEEEEEc---CCCcEeeEecCCCCCCccccccCCceeeeee
Confidence 2 2221 22346777777 55554433322 234455667775444444
No 96
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.64 E-value=0.018 Score=55.88 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=101.1
Q ss_pred ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEe-cCCcEEEEEecCCCCCCC
Q 007140 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNSTLLIFTIPSSRRDPP 113 (616)
Q Consensus 35 ~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~ws-pdg~~l~~~~~~~~~~~~ 113 (616)
.|.|.+....|.|+- -....|+.++.++++.+.+... . ...+... ++|+ |++...
T Consensus 4 gp~~d~~~g~l~~~D---------~~~~~i~~~~~~~~~~~~~~~~-~------~~G~~~~~~~g~-l~v~~~------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVD---------IPGGRIYRVDPDTGEVEVIDLP-G------PNGMAFDRPDGR-LYVADS------- 59 (246)
T ss_dssp EEEEETTTTEEEEEE---------TTTTEEEEEETTTTEEEEEESS-S------EEEEEEECTTSE-EEEEET-------
T ss_pred ceEEECCCCEEEEEE---------cCCCEEEEEECCCCeEEEEecC-C------CceEEEEccCCE-EEEEEc-------
Confidence 689999777777764 2457999999998876654322 2 2345555 5655 444311
Q ss_pred CCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCC----C-C--ceeeeeECCC
Q 007140 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGT----P-A--VYTAVEPSPD 185 (616)
Q Consensus 114 ~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~----~-~--~~~~~~~SpD 185 (616)
..+.++|+ +++.+.+.. . . ...+++++||
T Consensus 60 -------------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~ 96 (246)
T PF08450_consen 60 -------------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPD 96 (246)
T ss_dssp -------------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TT
T ss_pred -------------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCC
Confidence 11233354 444333321 1 1 3458999999
Q ss_pred CcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEec-CCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeec
Q 007140 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (616)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (616)
|+ |+|+.......... ....+++++.. ++.+.+. .+. ....+.|+||++ .||+...
T Consensus 97 G~-ly~t~~~~~~~~~~----~~g~v~~~~~~-~~~~~~~~~~~--------------~pNGi~~s~dg~-~lyv~ds-- 153 (246)
T PF08450_consen 97 GN-LYVTDSGGGGASGI----DPGSVYRIDPD-GKVTVVADGLG--------------FPNGIAFSPDGK-TLYVADS-- 153 (246)
T ss_dssp S--EEEEEECCBCTTCG----GSEEEEEEETT-SEEEEEEEEES--------------SEEEEEEETTSS-EEEEEET--
T ss_pred CC-EEEEecCCCccccc----cccceEEECCC-CeEEEEecCcc--------------cccceEECCcch-heeeccc--
Confidence 98 77775432211000 01579999988 4444432 211 012589999997 3655421
Q ss_pred CCCcccccCCCceeEeccCCCCCCCCc---eEeccccc---cccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 265 RGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLDL---RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~l~~~~~---~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
....++.++.+ ..+++. +.+..... ....+.+..+|..++... . ..+|++++.++
T Consensus 154 ---------~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~---~~~I~~~~p~G 214 (246)
T PF08450_consen 154 ---------FNGRIWRFDLD-ADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-G---GGRIVVFDPDG 214 (246)
T ss_dssp ---------TTTEEEEEEEE-TTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-T---TTEEEEEETTS
T ss_pred ---------ccceeEEEecc-ccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-C---CCEEEEECCCc
Confidence 22345544430 012211 22222221 234566777777544432 1 22799999885
No 97
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.62 E-value=0.00019 Score=68.34 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=73.0
Q ss_pred eEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEECC
Q 007140 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (616)
Q Consensus 483 e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~n~ 562 (616)
+..++. .+|...+++||.|++.+.++ |+||+.|+. .+.++++.|. . -|..+....||+|+.
T Consensus 36 ~~~s~~-~~g~~r~y~l~vP~g~~~~a----pLvv~LHG~---~~sgag~~~~--------s-g~d~lAd~~gFlV~y-- 96 (312)
T COG3509 36 SVASFD-VNGLKRSYRLYVPPGLPSGA----PLVVVLHGS---GGSGAGQLHG--------T-GWDALADREGFLVAY-- 96 (312)
T ss_pred Cccccc-cCCCccceEEEcCCCCCCCC----CEEEEEecC---CCChHHhhcc--------c-chhhhhcccCcEEEC--
Confidence 334554 48899999999999988643 677777442 1122222221 1 234677888999999
Q ss_pred CCCccccCCCcc-C--Chh--------HHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 563 SIPIIGEGDKLP-N--DRF--------VEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 563 R~GS~GyG~~f~-~--~~~--------g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
. .||.+.|. + .+| |-.|+..|.+.|+.|+.+.=|||.||+||+
T Consensus 97 --P-dg~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtG 150 (312)
T COG3509 97 --P-DGYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTG 150 (312)
T ss_pred --c-CccccccCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEe
Confidence 4 46777773 2 333 446889999999999988779999999997
No 98
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.59 E-value=0.012 Score=54.45 Aligned_cols=220 Identities=12% Similarity=0.151 Sum_probs=120.6
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCC-CcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCc
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~ 83 (616)
.+|=|.++.. ++..++..+... ..+....|--||++++- ... ++...|| |+..-...++.....
T Consensus 61 qhvRlyD~~S----~np~Pv~t~e~h~kNVtaVgF~~dgrWMyT-gse-------Dgt~kIW--dlR~~~~qR~~~~~s- 125 (311)
T KOG0315|consen 61 QHVRLYDLNS----NNPNPVATFEGHTKNVTAVGFQCDGRWMYT-GSE-------DGTVKIW--DLRSLSCQRNYQHNS- 125 (311)
T ss_pred CeeEEEEccC----CCCCceeEEeccCCceEEEEEeecCeEEEe-cCC-------CceEEEE--eccCcccchhccCCC-
Confidence 3555666542 554444433322 15778889999998644 321 4555555 665544455543332
Q ss_pred cccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEe
Q 007140 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (616)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d 163 (616)
. +....-.|+-..|+.. + ...+|+++|
T Consensus 126 p----Vn~vvlhpnQteLis~-----------------------------------d--------------qsg~irvWD 152 (311)
T KOG0315|consen 126 P----VNTVVLHPNQTELISG-----------------------------------D--------------QSGNIRVWD 152 (311)
T ss_pred C----cceEEecCCcceEEee-----------------------------------c--------------CCCcEEEEE
Confidence 1 4444555554444432 0 246788889
Q ss_pred C-CC-CeeecCCCC--ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce----EEEecCCCCCCCCCc
Q 007140 164 L-DG-TAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL----VRELCDLPPAEDIPV 235 (616)
Q Consensus 164 ~-~g-~~~~l~~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~ 235 (616)
+ +. -..+|.+++ .+.++...|||+.++...+. ...|+|++.++. ...+..++..+.
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-------------G~cyvW~l~~~~~~s~l~P~~k~~ah~~--- 216 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-------------GNCYVWRLLNHQTASELEPVHKFQAHNG--- 216 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-------------ccEEEEEccCCCccccceEhhheecccc---
Confidence 8 44 244444332 56789999999998877432 368899875432 222333222110
Q ss_pred cccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEE
Q 007140 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (616)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~ 315 (616)
. .-.-.+|||+++ |+-. +....+++|+.+.|- .....|.........-.||.||.+|+.
T Consensus 217 ------~-il~C~lSPd~k~-lat~------------ssdktv~iwn~~~~~-kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 217 ------H-ILRCLLSPDVKY-LATC------------SSDKTVKIWNTDDFF-KLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred ------e-EEEEEECCCCcE-EEee------------cCCceEEEEecCCce-eeEEEeecCCceEEeeeeccCccEEEe
Confidence 0 113568999984 3322 223356666663221 112234444445677889999998776
Q ss_pred eeeccCccEEEEEEeC
Q 007140 316 ETWYKTSQTRTWLVCP 331 (616)
Q Consensus 316 ~~~~~~~~~~l~~~d~ 331 (616)
.+. +...+||-+..
T Consensus 276 ass--d~~~rlW~~~~ 289 (311)
T KOG0315|consen 276 ASS--DHTARLWDLSA 289 (311)
T ss_pred cCC--CCceeeccccc
Confidence 542 24557776544
No 99
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.57 E-value=0.074 Score=50.23 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=114.4
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC-----Cc-eEecccCCCccccccccceEEecCCcEEEEEe
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-----GE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~-----g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (616)
.+...+..+.+..+.+.+.+| ..+.++++.. |. .++++.++.. ++...-|+||...+-..
T Consensus 17 ~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH~-----v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSHF-----VSDVVLSSDGNFALSAS 82 (315)
T ss_pred eEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccceE-----ecceEEccCCceEEecc
Confidence 356677777777788877653 3455555532 43 3556554432 56788888988533320
Q ss_pred cCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeee-c-CCCCceeeeeE
Q 007140 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-F-GTPAVYTAVEP 182 (616)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~-l-~~~~~~~~~~~ 182 (616)
. ...+..+|+ +|+.++ + .+...+..+++
T Consensus 83 ----------------------------------------w---------D~~lrlWDl~~g~~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 83 ----------------------------------------W---------DGTLRLWDLATGESTRRFVGHTKDVLSVAF 113 (315)
T ss_pred ----------------------------------------c---------cceEEEEEecCCcEEEEEEecCCceEEEEe
Confidence 1 135667788 566554 3 34446779999
Q ss_pred CCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEe
Q 007140 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (616)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (616)
|||.++|+-.+.+ ..|-+|++.|...-.+.+.... . + ..-+.|+|.... .+.+..
T Consensus 114 s~dn~qivSGSrD-------------kTiklwnt~g~ck~t~~~~~~~---~----W----VscvrfsP~~~~-p~Ivs~ 168 (315)
T KOG0279|consen 114 STDNRQIVSGSRD-------------KTIKLWNTLGVCKYTIHEDSHR---E----W----VSCVRFSPNESN-PIIVSA 168 (315)
T ss_pred cCCCceeecCCCc-------------ceeeeeeecccEEEEEecCCCc---C----c----EEEEEEcCCCCC-cEEEEc
Confidence 9999998755432 3678899988877666541100 0 0 113778888532 333322
Q ss_pred ecCCCcccccCCCceeEeccCCCCCCCCceE-eccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
.....+-+|++ .+-+.+. .....+....+.+||||...++. .+++ .+++.|++.
T Consensus 169 ----------s~DktvKvWnl---~~~~l~~~~~gh~~~v~t~~vSpDGslcasG--gkdg--~~~LwdL~~ 223 (315)
T KOG0279|consen 169 ----------SWDKTVKVWNL---RNCQLRTTFIGHSGYVNTVTVSPDGSLCASG--GKDG--EAMLWDLNE 223 (315)
T ss_pred ----------cCCceEEEEcc---CCcchhhccccccccEEEEEECCCCCEEecC--CCCc--eEEEEEccC
Confidence 12234555666 3222222 22334455678999999965552 3334 567777776
No 100
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.013 Score=56.15 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=23.9
Q ss_pred ceEEEEeCCCCeee-cCCCC-ceeeeeECCCCcEEEEEec
Q 007140 157 AQLVLGSLDGTAKD-FGTPA-VYTAVEPSPDQKYVLITSM 194 (616)
Q Consensus 157 ~~l~~~d~~g~~~~-l~~~~-~~~~~~~SpDg~~i~~~~~ 194 (616)
..|.++++.|+.-+ +.... .....+.||||++|+....
T Consensus 209 t~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred CcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecC
Confidence 45677777664332 32221 2236799999999998753
No 101
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.54 E-value=0.02 Score=60.37 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=75.4
Q ss_pred eeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEE--ecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE--LCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
..+.+||||++|+|+...... -...|+++|+++++... +.. .....+.|++|++.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~--------e~~~l~v~Dl~tg~~l~d~i~~---------------~~~~~~~W~~d~~~ 183 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGS--------EWYTLRVFDLETGKFLPDGIEN---------------PKFSSVSWSDDGKG 183 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTS--------SEEEEEEEETTTTEEEEEEEEE---------------EESEEEEECTTSSE
T ss_pred eeeeECCCCCEEEEEecCCCC--------ceEEEEEEECCCCcCcCCcccc---------------cccceEEEeCCCCE
Confidence 368999999999999765431 13478999998774322 111 00113899999984
Q ss_pred eEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce--Eecccc-cc--ccceeecCCCceEEEeeeccCccEEEEEEe
Q 007140 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE--ILHKLD-LR--FRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (616)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~l~~~~-~~--~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (616)
++|....+..... .......++.+.+ .++... .+.... .. ...+.+|+|++.++.........+.+|.++
T Consensus 184 -~~y~~~~~~~~~~-~~~~~~~v~~~~~---gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 184 -FFYTRFDEDQRTS-DSGYPRQVYRHKL---GTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp -EEEEECSTTTSS--CCGCCEEEEEEET---TS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred -EEEEEeCcccccc-cCCCCcEEEEEEC---CCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 7776443221100 0111234555554 322222 344332 22 346778999997655443322247999999
Q ss_pred CCCC---CCCceEEee
Q 007140 331 PGSK---DVAPRVLFD 343 (616)
Q Consensus 331 ~~~~---~~~~~~l~~ 343 (616)
+... ..+++++..
T Consensus 259 ~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 259 LDDGGSPDAKPKLLSP 274 (414)
T ss_dssp CCCTTTSS-SEEEEEE
T ss_pred ccccCCCcCCcEEEeC
Confidence 9873 224555543
No 102
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.028 Score=57.90 Aligned_cols=235 Identities=16% Similarity=0.196 Sum_probs=127.1
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (616)
.+++.++.. ..+....|. ...++...+||-+..-....-.-+..| .-....||-+..+ +....+. . ..+
T Consensus 147 ev~f~~~~~--f~~~~~kl~----~~~i~~f~lSpgp~~~~vAvyvPe~kG-aPa~vri~~~~~~-~~~~~~a-~--ksF 215 (566)
T KOG2315|consen 147 EVQFYDLGS--FKTIQHKLS----VSGITMLSLSPGPEPPFVAVYVPEKKG-APASVRIYKYPEE-GQHQPVA-N--KSF 215 (566)
T ss_pred eEEEEecCC--ccceeeeee----ccceeeEEecCCCCCceEEEEccCCCC-CCcEEEEeccccc-cccchhh-h--ccc
Confidence 455666532 333444443 225788899987654333222211111 1223456655522 2222221 0 011
Q ss_pred -cccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 86 -NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 86 -~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
.+.--.+.|.+-|..|+.++.. + .|...-.||+...||.++.
T Consensus 216 Fkadkvqm~WN~~gt~LLvLast--------------------d-----------------VDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 216 FKADKVQMKWNKLGTALLVLAST--------------------D-----------------VDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred cccceeEEEeccCCceEEEEEEE--------------------e-----------------ecCCCccccccceEEEEEe
Confidence 0112378999999977775321 1 1111123556789999999
Q ss_pred CCC--eeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccC
Q 007140 165 DGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (616)
Q Consensus 165 ~g~--~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (616)
+|+ ..+|...+-+.++.|||+|+..++.---- +..+-++|+.++.+-.+-.
T Consensus 259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM-----------PAkvtifnlr~~~v~df~e---------------- 311 (566)
T KOG2315|consen 259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM-----------PAKVTIFNLRGKPVFDFPE---------------- 311 (566)
T ss_pred cCceEEEecCCCCCceEEEECCCCCEEEEEEecc-----------cceEEEEcCCCCEeEeCCC----------------
Confidence 874 44566555567999999998777663211 4578889999886654332
Q ss_pred CCCc-ceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEecccc-ccccceeecCCCceEEEeee--
Q 007140 243 GMRS-ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETW-- 318 (616)
Q Consensus 243 ~~~~-~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-~~~~~~~wspDg~~l~~~~~-- 318 (616)
|.++ +.|+|.|.. |+++.+- +..+.+-+||+ . ..+.|.... ....-+.|+|||..|+....
T Consensus 312 gpRN~~~fnp~g~i-i~lAGFG---------NL~G~mEvwDv---~--n~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNI-ILLAGFG---------NLPGDMEVWDV---P--NRKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred CCccceEECCCCCE-EEEeecC---------CCCCceEEEec---c--chhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 3444 789999973 5554331 12233444555 2 223343332 23456899999998654321
Q ss_pred --ccCccEEEEEEe
Q 007140 319 --YKTSQTRTWLVC 330 (616)
Q Consensus 319 --~~~~~~~l~~~d 330 (616)
+.+....||.++
T Consensus 377 RlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYT 390 (566)
T ss_pred cEEecCCeEEEEec
Confidence 112345777774
No 103
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.52 E-value=0.12 Score=51.31 Aligned_cols=214 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred eeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCc-ceeecCCCce
Q 007140 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS-ISWRADKPST 256 (616)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~wspdg~~~ 256 (616)
..+.+|.|||++++.. -.| ...+-++|++.+++-..... |.|.-....+.+. .....||+
T Consensus 98 ~~~~ls~dgk~~~V~N-~TP----------a~SVtVVDl~~~kvv~ei~~------PGC~~iyP~~~~~F~~lC~DGs-- 158 (342)
T PF06433_consen 98 NMFALSADGKFLYVQN-FTP----------ATSVTVVDLAAKKVVGEIDT------PGCWLIYPSGNRGFSMLCGDGS-- 158 (342)
T ss_dssp GGEEE-TTSSEEEEEE-ESS----------SEEEEEEETTTTEEEEEEEG------TSEEEEEEEETTEEEEEETTSC--
T ss_pred cceEEccCCcEEEEEc-cCC----------CCeEEEEECCCCceeeeecC------CCEEEEEecCCCceEEEecCCc--
Confidence 4679999999998874 334 45789999997765433221 2111000011112 23344444
Q ss_pred EEEEEeecCCCcccccCCCceeEeccCCCCCCCCceE----ec--cccccccceeecCCCceEEEeeeccCccEEEEEEe
Q 007140 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI----LH--KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (616)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----l~--~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d 330 (616)
+..+ .++. + |+... ++ ..+.-+..+.++.++..++|-+. . + .+|.++
T Consensus 159 l~~v-------------------~Ld~---~-Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy-~-G--~v~~~d 211 (342)
T PF06433_consen 159 LLTV-------------------TLDA---D-GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY-E-G--NVYSAD 211 (342)
T ss_dssp EEEE-------------------EETS---T-SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT-T-S--EEEEEE
T ss_pred eEEE-------------------EECC---C-CCEeEeeccccCCCCcccccccceECCCCeEEEEec-C-C--EEEEEe
Confidence 2222 1232 2 22221 11 11122345566655555565542 2 2 799999
Q ss_pred CCCCCCCceEEeeccc------ccccCCC-CCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeecC
Q 007140 331 PGSKDVAPRVLFDRVF------ENVYSDP-GSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDIN 403 (616)
Q Consensus 331 ~~~~~~~~~~l~~~~~------~~~~~~~-g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~ 403 (616)
+.+. .++..-..+. .+.. -| |...+++.+...++|++-... . .|.++. .-..++.+|++
T Consensus 212 lsg~--~~~~~~~~~~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g-~---------~gsHKd-pgteVWv~D~~ 277 (342)
T PF06433_consen 212 LSGD--SAKFGKPWSLLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQG-G---------EGSHKD-PGTEVWVYDLK 277 (342)
T ss_dssp ETTS--SEEEEEEEESS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE------------TT-TTS--EEEEEEEETT
T ss_pred ccCC--cccccCcccccCccccccCc-CCcceeeeeeccccCeEEEEecCC-C---------CCCccC-CceEEEEEECC
Confidence 9873 3343321111 0000 12 224466666555665543211 0 111122 12235568998
Q ss_pred CCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEeCCCCcee
Q 007140 404 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS 465 (616)
Q Consensus 404 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~ 465 (616)
++++..-+....+ +.+ ..++-|.+=+++..+. .-..|+++|+.+|+..
T Consensus 278 t~krv~Ri~l~~~-----~~S-------i~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 278 THKRVARIPLEHP-----IDS-------IAVSQDDKPLLYALSA--GDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEEEEEEE-----ESE-------EEEESSSS-EEEEEET--TTTEEEEEETTT--EE
T ss_pred CCeEEEEEeCCCc-----cce-------EEEccCCCcEEEEEcC--CCCeEEEEeCcCCcEE
Confidence 8874443332211 111 1244455656565543 2367999999988754
No 104
>PRK10162 acetyl esterase; Provisional
Probab=97.49 E-value=0.00061 Score=68.87 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=68.5
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhh-CCeEEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~-~Gy~Vl 559 (616)
..+.+++...+| +|...+|+|.. + +.|+|||+|+|. -+.++...+ . .....||. .||.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~--~~p~vv~~HGGg--------~~~g~~~~~---~-~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----D--SQATLFYLHGGG--------FILGNLDTH---D-RIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----C--CCCEEEEEeCCc--------ccCCCchhh---h-HHHHHHHHHcCCEEE
Confidence 466678888888 59999999952 1 238999994321 112222222 1 23456776 599999
Q ss_pred E-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc--C-CccCCceEEEee
Q 007140 560 A-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--G-VGLPILYLNTTA 609 (616)
Q Consensus 560 ~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~--~-~vD~~ri~~~~~ 609 (616)
. ||| .+... .|+ ..++|+.++++|+.+. . -+|++||+|-+.
T Consensus 117 ~vdYr-lape~--~~p------~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~ 161 (318)
T PRK10162 117 GIDYT-LSPEA--RFP------QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGD 161 (318)
T ss_pred EecCC-CCCCC--CCC------CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEE
Confidence 9 999 77543 344 2579999999999764 2 379999998764
No 105
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.024 Score=60.45 Aligned_cols=136 Identities=15% Similarity=0.220 Sum_probs=84.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEEC-CCCceEecc-cCCCccccccccceEEecCCcEEEEEecCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~-~~g~~~~lt-~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (616)
.+....|||||+.|+-.+ ....|+++++ ..+...+.. .+.. . +..+.|+|+|+.|+....
T Consensus 205 ~v~~~~fs~d~~~l~s~s----------~D~tiriwd~~~~~~~~~~l~gH~~-~----v~~~~f~p~g~~i~Sgs~--- 266 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGS----------DDKTLRIWDLKDDGRNLKTLKGHST-Y----VTSVAFSPDGNLLVSGSD--- 266 (456)
T ss_pred ceeeeEECCCCcEEEEec----------CCceEEEeeccCCCeEEEEecCCCC-c----eEEEEecCCCCEEEEecC---
Confidence 588999999999554433 2468888898 444543333 2222 2 568899999965555310
Q ss_pred CCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCee-ecC-CCCceeeeeECCCC
Q 007140 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG-TPAVYTAVEPSPDQ 186 (616)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~-~l~-~~~~~~~~~~SpDg 186 (616)
...+.++|+ +|+.. .|. ..+.++.+++++||
T Consensus 267 ----------------------------------------------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 267 ----------------------------------------------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG 300 (456)
T ss_pred ----------------------------------------------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCC
Confidence 134556677 45544 343 23467789999999
Q ss_pred cEEEEEeccCCCcccccCcccCccEEEEeCCCceEE---EecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR---ELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
..|+..+.+ ..+.+||+.++... .+... +.. . -.....|+|++++
T Consensus 301 ~~l~s~s~d-------------~~i~vwd~~~~~~~~~~~~~~~---~~~-------~-~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 301 NLLVSASYD-------------GTIRVWDLETGSKLCLKLLSGA---ENS-------A-PVTSVQFSPNGKY 348 (456)
T ss_pred CEEEEcCCC-------------ccEEEEECCCCceeeeecccCC---CCC-------C-ceeEEEECCCCcE
Confidence 999877532 36889999877633 33221 110 0 0235788999984
No 106
>PTZ00421 coronin; Provisional
Probab=97.43 E-value=0.075 Score=56.87 Aligned_cols=199 Identities=11% Similarity=0.027 Sum_probs=103.4
Q ss_pred cccceEEcc-CCCeEEEEEeeccccccCCCceeEEEEECCCCce--------EecccCCCccccccccceEEecCCcEEE
Q 007140 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--------KPLFESPDICLNAVFGSFVWVNNSTLLI 102 (616)
Q Consensus 32 ~~~~~~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~--------~~lt~~~~~~~~~~~~~~~wspdg~~l~ 102 (616)
.+....||| |++.|+..+. ...|.+|++.++.. ..+..+. ..+..+.|+|++..++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~----------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE----------DGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC----------CCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 478999999 8887665542 24666677765421 1221111 1256789999865333
Q ss_pred EEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCe-eecC-CCCceee
Q 007140 103 FTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA-KDFG-TPAVYTA 179 (616)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~-~~l~-~~~~~~~ 179 (616)
.+.. ....|.++|+ +++. ..+. ....+..
T Consensus 142 aSgs------------------------------------------------~DgtVrIWDl~tg~~~~~l~~h~~~V~s 173 (493)
T PTZ00421 142 ASAG------------------------------------------------ADMVVNVWDVERGKAVEVIKCHSDQITS 173 (493)
T ss_pred EEEe------------------------------------------------CCCEEEEEECCCCeEEEEEcCCCCceEE
Confidence 3210 0134566677 4543 3333 2345678
Q ss_pred eeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEE
Q 007140 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (616)
Q Consensus 180 ~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (616)
++|+|||+.|+....+ ..|.+||+..+ ....+..... .......|.+++.. |+
T Consensus 174 la~spdG~lLatgs~D-------------g~IrIwD~rsg~~v~tl~~H~~------------~~~~~~~w~~~~~~-iv 227 (493)
T PTZ00421 174 LEWNLDGSLLCTTSKD-------------KKLNIIDPRDGTIVSSVEAHAS------------AKSQRCLWAKRKDL-II 227 (493)
T ss_pred EEEECCCCEEEEecCC-------------CEEEEEECCCCcEEEEEecCCC------------CcceEEEEcCCCCe-EE
Confidence 9999999988776543 36889998654 3333322100 00113568887653 32
Q ss_pred EEEeecCCCcccccCCCceeEeccCCCCCC-CCceEecc--ccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 259 WVEAQDRGDANVEVSPRDIIYTQPAEPAEG-EKPEILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 259 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
-+.... .....+.+||. .. ..+..+.. .......+.|++|+..|+..... ++ .|..+++..
T Consensus 228 t~G~s~--------s~Dr~VklWDl---r~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkg-Dg--~Iriwdl~~ 291 (493)
T PTZ00421 228 TLGCSK--------SQQRQIMLWDT---RKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKG-EG--NIRCFELMN 291 (493)
T ss_pred EEecCC--------CCCCeEEEEeC---CCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeC-CC--eEEEEEeeC
Confidence 221110 11235666675 21 12222211 11223456789998865543311 23 455666655
No 107
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.42 E-value=0.0063 Score=67.11 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=50.6
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (616)
+|.|.+.. +++.+.+. +.....+..|.|||||++|||+..... -.+...||+.++.+....++- .+-..
T Consensus 330 ~L~~~D~d----G~n~~~ve-~~~~~~i~sP~~SPDG~~vAY~ts~e~----~~g~s~vYv~~L~t~~~~~vk-l~ve~- 398 (912)
T TIGR02171 330 NLAYIDYT----KGASRAVE-IEDTISVYHPDISPDGKKVAFCTGIEG----LPGKSSVYVRNLNASGSGLVK-LPVEN- 398 (912)
T ss_pred eEEEEecC----CCCceEEE-ecCCCceecCcCCCCCCEEEEEEeecC----CCCCceEEEEehhccCCCceE-eeccc-
Confidence 56677653 24666662 122335789999999999999554420 025788999999874333221 11111
Q ss_pred cccccceEEe--cCCcE-EEEE
Q 007140 86 NAVFGSFVWV--NNSTL-LIFT 104 (616)
Q Consensus 86 ~~~~~~~~ws--pdg~~-l~~~ 104 (616)
..-+.|- .+|.. |+|+
T Consensus 399 ---aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 399 ---AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred ---ccccceEecCCCCeEEEEE
Confidence 2356775 66775 4555
No 108
>PTZ00420 coronin; Provisional
Probab=97.41 E-value=0.24 Score=53.73 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=61.2
Q ss_pred CceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE-EEecCCCCCCCCCccccCccCCCCcceeecCC
Q 007140 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (616)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (616)
..+..++|+|++..++++.... ..|.+||+..++. ..+.. + .....+.|+|||
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~D------------gtIrIWDl~tg~~~~~i~~-~-------------~~V~SlswspdG 179 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFD------------SFVNIWDIENEKRAFQINM-P-------------KKLSSLKWNIKG 179 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCC------------CeEEEEECCCCcEEEEEec-C-------------CcEEEEEECCCC
Confidence 3567899999999877664322 3688999876543 22221 0 012468899999
Q ss_pred CceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-Eeccccccc-cc----eeecCCCceEEEeeeccCccEEEE
Q 007140 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRF-RS----VSWCDDSLALVNETWYKTSQTRTW 327 (616)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~-~~----~~wspDg~~l~~~~~~~~~~~~l~ 327 (616)
.. | .... ....+.+|+. ..++.. .+....+.. .. ..|++|+..|+.....+.....|.
T Consensus 180 ~l-L-at~s-----------~D~~IrIwD~---Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 180 NL-L-SGTC-----------VGKHMHIIDP---RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred CE-E-EEEe-----------cCCEEEEEEC---CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 83 3 2211 1235666676 433332 232222211 11 234588777665432211112466
Q ss_pred EEeCCC
Q 007140 328 LVCPGS 333 (616)
Q Consensus 328 ~~d~~~ 333 (616)
+.|+..
T Consensus 244 LWDlr~ 249 (568)
T PTZ00420 244 LWDLKN 249 (568)
T ss_pred EEECCC
Confidence 667664
No 109
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=97.41 E-value=0.00061 Score=69.87 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=67.3
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCC-eEEEE-CCCCCc
Q 007140 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLA-GPSIPI 566 (616)
Q Consensus 489 ~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~G-y~Vl~-n~R~GS 566 (616)
+-|.+-|. |+.|+ +.. .++|||||+|+|.|..| ++.-.. ...+.||.+| ++|+. |||.|-
T Consensus 76 sEDCL~LN--IwaP~-~~a---~~~PVmV~IHGG~y~~G------s~s~~~------ydgs~La~~g~vVvVSvNYRLG~ 137 (491)
T COG2272 76 SEDCLYLN--IWAPE-VPA---EKLPVMVYIHGGGYIMG------SGSEPL------YDGSALAARGDVVVVSVNYRLGA 137 (491)
T ss_pred cccceeEE--eeccC-CCC---CCCcEEEEEeccccccC------CCcccc------cChHHHHhcCCEEEEEeCccccc
Confidence 34666675 78888 333 24699999977665432 111111 2357899999 99999 999997
Q ss_pred cccC--CCccC--ChhHHHHHHHHHHHHHHHHHc--CC-ccCCceEEEe
Q 007140 567 IGEG--DKLPN--DRFVEQLVSSAEAAVEEVVRR--GV-GLPILYLNTT 608 (616)
Q Consensus 567 ~GyG--~~f~~--~~~g~~~~~D~~~~v~~l~~~--~~-vD~~ri~~~~ 608 (616)
-||= ..+.. ..-...-+.||+.|++|+.+. -+ -||+.|-|.+
T Consensus 138 lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~G 186 (491)
T COG2272 138 LGFLDLSSLDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFG 186 (491)
T ss_pred ceeeehhhccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEee
Confidence 7761 11111 111124589999999999766 22 6999998876
No 110
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.36 E-value=0.049 Score=51.74 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=120.1
Q ss_pred EeecCCCCCCCCceeeecCCCCC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccc
Q 007140 9 IHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNA 87 (616)
Q Consensus 9 ~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~ 87 (616)
|.+++..+..|..+.-..++... ..+.-+|-+|++.|. . ++....-+||+++|+..+.+....+.
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT--~---------SGD~TCalWDie~g~~~~~f~GH~gD--- 188 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILT--G---------SGDMTCALWDIETGQQTQVFHGHTGD--- 188 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCceEe--c---------CCCceEEEEEcccceEEEEecCCccc---
Confidence 34554333344333332233333 467778888776432 2 23345556699999877665433322
Q ss_pred cccceEEec-CCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-C
Q 007140 88 VFGSFVWVN-NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D 165 (616)
Q Consensus 88 ~~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~ 165 (616)
+-.+..+| +++.++--.- ....+++|+ +
T Consensus 189 -V~slsl~p~~~ntFvSg~c-------------------------------------------------D~~aklWD~R~ 218 (343)
T KOG0286|consen 189 -VMSLSLSPSDGNTFVSGGC-------------------------------------------------DKSAKLWDVRS 218 (343)
T ss_pred -EEEEecCCCCCCeEEeccc-------------------------------------------------ccceeeeeccC
Confidence 45677778 6665433110 122344566 5
Q ss_pred CCeeec--CCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCC
Q 007140 166 GTAKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (616)
Q Consensus 166 g~~~~l--~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (616)
+..+|- +....+..+.|-|+|..++-.+.+. ...++|+...+.-.+...+ ....+
T Consensus 219 ~~c~qtF~ghesDINsv~ffP~G~afatGSDD~-------------tcRlyDlRaD~~~a~ys~~----------~~~~g 275 (343)
T KOG0286|consen 219 GQCVQTFEGHESDINSVRFFPSGDAFATGSDDA-------------TCRLYDLRADQELAVYSHD----------SIICG 275 (343)
T ss_pred cceeEeecccccccceEEEccCCCeeeecCCCc-------------eeEEEeecCCcEEeeeccC----------cccCC
Confidence 544442 2333567899999998877665432 3557777654322222210 01123
Q ss_pred CCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCceEEEeeeccCc
Q 007140 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (616)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~ 322 (616)
..+..+|-.|+ |.|....| -.+.+||. ++ ++.. .|...+.+++.+..+|||.+++..+|. .
T Consensus 276 itSv~FS~SGR--lLfagy~d-----------~~c~vWDt--lk-~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD--s 337 (343)
T KOG0286|consen 276 ITSVAFSKSGR--LLFAGYDD-----------FTCNVWDT--LK-GERVGVLAGHENRVSCLGVSPDGMAVATGSWD--S 337 (343)
T ss_pred ceeEEEccccc--EEEeeecC-----------CceeEeec--cc-cceEEEeeccCCeeEEEEECCCCcEEEecchh--H
Confidence 34577888887 55653221 24566675 23 3333 477778888999999999999988874 3
Q ss_pred cEEEE
Q 007140 323 QTRTW 327 (616)
Q Consensus 323 ~~~l~ 327 (616)
..+||
T Consensus 338 ~lriW 342 (343)
T KOG0286|consen 338 TLRIW 342 (343)
T ss_pred heeec
Confidence 34565
No 111
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.32 E-value=0.0023 Score=65.18 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=66.7
Q ss_pred ccCCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC-chHHHHhhCC
Q 007140 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARR 555 (616)
Q Consensus 477 ~~~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~la~~G 555 (616)
.+.+..+...|++.||.+|++..+.|.+-.+ +.|+||++|+- ++...| .+ ...+.|+++|
T Consensus 27 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~----~~~~VvllHG~------------~~~~~~---~~~~~~~~L~~~G 87 (330)
T PLN02298 27 LKGIKGSKSFFTSPRGLSLFTRSWLPSSSSP----PRALIFMVHGY------------GNDISW---TFQSTAIFLAQMG 87 (330)
T ss_pred ccCCccccceEEcCCCCEEEEEEEecCCCCC----CceEEEEEcCC------------CCCcce---ehhHHHHHHHhCC
Confidence 3345666778888999999999998865322 23778888321 000122 11 3356789999
Q ss_pred eEEEE-CCCCCccccCCCccC-C--hhHHHHHHHHHHHHHHHHHcCCccCCceEE
Q 007140 556 FAVLA-GPSIPIIGEGDKLPN-D--RFVEQLVSSAEAAVEEVVRRGVGLPILYLN 606 (616)
Q Consensus 556 y~Vl~-n~R~GS~GyG~~f~~-~--~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~ 606 (616)
|.|+. |+| | +|..-.. + .--....+|+.+++++|....-.+..++.+
T Consensus 88 y~V~~~D~r-G---hG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l 138 (330)
T PLN02298 88 FACFALDLE-G---HGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFL 138 (330)
T ss_pred CEEEEecCC-C---CCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 99999 999 7 3433111 1 112345789999999998654334444444
No 112
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0086 Score=61.56 Aligned_cols=145 Identities=12% Similarity=0.226 Sum_probs=95.0
Q ss_pred cceEEccCCCeEEEEEeecccc--ccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 34 NFVSWSPDGKRIAFSVRVDEED--NVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 34 ~~~~~SPDG~~iaf~~~~~~~~--~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
....|.+-|+-|..+...+-+. .-..+.+.||++++. |+...+--..++. +-.+.|+|+|+.++++.
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP----Vhdv~W~~s~~EF~Vvy------ 289 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP----VHDVTWSPSGREFAVVY------ 289 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC----ceEEEECCCCCEEEEEE------
Confidence 3568999999999998874321 123567899999998 5544443223333 67899999999766641
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCCCeee-cCCCCceeeeeECCCCcEEE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKD-FGTPAVYTAVEPSPDQKYVL 190 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g~~~~-l~~~~~~~~~~~SpDg~~i~ 190 (616)
| +....+-++|+.+.+.- +..+ -...+-|||-|..|+
T Consensus 290 ------------------G-----------------------fMPAkvtifnlr~~~v~df~eg-pRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 290 ------------------G-----------------------FMPAKVTIFNLRGKPVFDFPEG-PRNTAFFNPHGNIIL 327 (566)
T ss_pred ------------------e-----------------------cccceEEEEcCCCCEeEeCCCC-CccceEECCCCCEEE
Confidence 1 01245566777776553 4433 345789999999999
Q ss_pred EEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
+..-.+ .+.++.+||+.. .++|...... +..-+.|+|||.+
T Consensus 328 lAGFGN----------L~G~mEvwDv~n--~K~i~~~~a~------------~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 328 LAGFGN----------LPGDMEVWDVPN--RKLIAKFKAA------------NTTVFEWSPDGEY 368 (566)
T ss_pred EeecCC----------CCCceEEEeccc--hhhccccccC------------CceEEEEcCCCcE
Confidence 886543 367899999876 3344432111 1224789999985
No 113
>PTZ00420 coronin; Provisional
Probab=97.29 E-value=0.23 Score=53.87 Aligned_cols=113 Identities=9% Similarity=0.085 Sum_probs=68.0
Q ss_pred cccceEEccC-CCeEEEEEeeccccccCCCceeEEEEECCCCce--E-------ecccCCCccccccccceEEecCCcEE
Q 007140 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--K-------PLFESPDICLNAVFGSFVWVNNSTLL 101 (616)
Q Consensus 32 ~~~~~~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~--~-------~lt~~~~~~~~~~~~~~~wspdg~~l 101 (616)
.+....|+|+ ++.||-.+ . + ..|.+|++.++.. . .+..+. ..+..+.|+|++..+
T Consensus 76 ~V~~lafsP~~~~lLASgS-~-------D--gtIrIWDi~t~~~~~~~i~~p~~~L~gH~-----~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGS-E-------D--LTIRVWEIPHNDESVKEIKDPQCILKGHK-----KKISIIDWNPMNYYI 140 (568)
T ss_pred CEEEEEEcCCCCCEEEEEe-C-------C--CeEEEEECCCCCccccccccceEEeecCC-----CcEEEEEECCCCCeE
Confidence 5789999997 56554443 2 2 4566668765321 1 121111 126688999999876
Q ss_pred EEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecCCCCceee
Q 007140 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTA 179 (616)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~~~~~~~~ 179 (616)
+.+... ...|.++|+ +++ ...+.....+..
T Consensus 141 LaSgS~------------------------------------------------DgtIrIWDl~tg~~~~~i~~~~~V~S 172 (568)
T PTZ00420 141 MCSSGF------------------------------------------------DSFVNIWDIENEKRAFQINMPKKLSS 172 (568)
T ss_pred EEEEeC------------------------------------------------CCeEEEEECCCCcEEEEEecCCcEEE
Confidence 553210 124556666 443 333433345678
Q ss_pred eeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce
Q 007140 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (616)
Q Consensus 180 ~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (616)
++|+|||+.|+....+ ..|.+||+.+++
T Consensus 173 lswspdG~lLat~s~D-------------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVG-------------KHMHIIDPRKQE 200 (568)
T ss_pred EEECCCCCEEEEEecC-------------CEEEEEECCCCc
Confidence 9999999988766432 268899987554
No 114
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.26 E-value=0.0097 Score=63.52 Aligned_cols=211 Identities=18% Similarity=0.235 Sum_probs=122.3
Q ss_pred eecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccc
Q 007140 10 HRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (616)
Q Consensus 10 ~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~ 89 (616)
.++.++++.+..+.+.+..+ .+...+||||.+.|.-.+. +....||.++. .....+. ... +..+
T Consensus 433 ~~~~D~~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t--~s~~V~y-~GH---~~PV 496 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDT--WSCLVIY-KGH---LAPV 496 (707)
T ss_pred hhhccccCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeeccc--ceeEEEe-cCC---Ccce
Confidence 46667788888888875443 4788899999998776653 45567776554 3322222 211 0113
Q ss_pred cceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCCCee
Q 007140 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK 169 (616)
Q Consensus 90 ~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g~~~ 169 (616)
-...|+|-|-+++.. . +| .+.+||..|-+-..+
T Consensus 497 wdV~F~P~GyYFata-s---------------------------------------~D-------~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATA-S---------------------------------------HD-------QTARLWSTDHNKPLR 529 (707)
T ss_pred eeEEecCCceEEEec-C---------------------------------------CC-------ceeeeeecccCCchh
Confidence 356678877433322 0 11 234566555432222
Q ss_pred ecCC-CCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcc
Q 007140 170 DFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSI 247 (616)
Q Consensus 170 ~l~~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 247 (616)
.+.. -..+.-+.|.|++.+++-.+.+ +.+.+||+. |..++..+.. . .-...+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD-------------~tVRlWDv~~G~~VRiF~GH----~---------~~V~al 583 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSD-------------RTVRLWDVSTGNSVRIFTGH----K---------GPVTAL 583 (707)
T ss_pred hhcccccccceEEECCcccccccCCCC-------------ceEEEEEcCCCcEEEEecCC----C---------CceEEE
Confidence 2211 1123458999999988755432 368899976 5566665431 1 112358
Q ss_pred eeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCceEEEeeeccCccEEE
Q 007140 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRT 326 (616)
Q Consensus 248 ~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l 326 (616)
.+||+|+ |+..- .....+.+||+ .+|... .+.........+.||.||.-|+.... +...+|
T Consensus 584 ~~Sp~Gr----~LaSg---------~ed~~I~iWDl---~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~l 645 (707)
T KOG0263|consen 584 AFSPCGR----YLASG---------DEDGLIKIWDL---ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRL 645 (707)
T ss_pred EEcCCCc----eEeec---------ccCCcEEEEEc---CCCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEE
Confidence 8999998 33111 22356778887 554433 34445566778999999987766542 233456
Q ss_pred E
Q 007140 327 W 327 (616)
Q Consensus 327 ~ 327 (616)
|
T Consensus 646 W 646 (707)
T KOG0263|consen 646 W 646 (707)
T ss_pred E
Confidence 6
No 115
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.036 Score=54.13 Aligned_cols=118 Identities=10% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceE----------ecccCCCcccccc
Q 007140 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK----------PLFESPDICLNAV 88 (616)
Q Consensus 19 g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~----------~lt~~~~~~~~~~ 88 (616)
..+..|+ .+....+....|-|.+..-.-+.-+ .+-.||..+......+ +|...+. +-.
T Consensus 130 t~pt~Lk-s~sQrnvtclawRPlsaselavgCr--------~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pg---h~p 197 (445)
T KOG2139|consen 130 TCPTKLK-SVSQRNVTCLAWRPLSASELAVGCR--------AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPG---HNP 197 (445)
T ss_pred CCCceec-chhhcceeEEEeccCCcceeeeeec--------ceeEEEEcCcccccccccccccccchhheeCCC---Cce
Confidence 4444454 2333357889999987764444432 3466776554332222 1222211 112
Q ss_pred ccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC
Q 007140 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT 167 (616)
Q Consensus 89 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~ 167 (616)
+..+.|.+||..|+-.+. ....|.++|+ +|.
T Consensus 198 Vtsmqwn~dgt~l~tAS~------------------------------------------------gsssi~iWdpdtg~ 229 (445)
T KOG2139|consen 198 VTSMQWNEDGTILVTASF------------------------------------------------GSSSIMIWDPDTGQ 229 (445)
T ss_pred eeEEEEcCCCCEEeeccc------------------------------------------------CcceEEEEcCCCCC
Confidence 557889998887655321 1356777888 565
Q ss_pred eeecCC--CCceeeeeECCCCcEEEEEeccC
Q 007140 168 AKDFGT--PAVYTAVEPSPDQKYVLITSMHR 196 (616)
Q Consensus 168 ~~~l~~--~~~~~~~~~SpDg~~i~~~~~~~ 196 (616)
..+|.. .+..+.+.|||||.+|+..+.+.
T Consensus 230 ~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 230 KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred cccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 444442 23567899999999998886543
No 116
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.18 E-value=0.16 Score=58.36 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=34.5
Q ss_pred cccceEEccC-CCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEec-CCcEEEE
Q 007140 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp-dg~~l~~ 103 (616)
.+....|+|. +++||. .. ....|.+||+.+++........... +..+.|+| ++..|+.
T Consensus 534 ~v~~l~~~~~~~~~las-~~---------~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 534 KLSGICWNSYIKSQVAS-SN---------FEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSSADPTLLAS 593 (793)
T ss_pred ceeeEEeccCCCCEEEE-Ee---------CCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcCCCCCEEEE
Confidence 4567889875 555443 32 2357778899887643332221212 56889996 6666555
No 117
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.14 E-value=0.002 Score=62.95 Aligned_cols=107 Identities=26% Similarity=0.267 Sum_probs=64.3
Q ss_pred ceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007140 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (616)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~ 100 (616)
..++|+.-+ -++...|||||++||-.+- ++ .|-+++-.+|+ .|+.... -+. .+=..+||.|.++
T Consensus 360 i~rmtgHq~--lVn~V~fSPd~r~IASaSF--------Dk--SVkLW~g~tGk--~lasfRG-Hv~-~VYqvawsaDsRL 423 (480)
T KOG0271|consen 360 ITRMTGHQA--LVNHVSFSPDGRYIASASF--------DK--SVKLWDGRTGK--FLASFRG-HVA-AVYQVAWSADSRL 423 (480)
T ss_pred hhhhhchhh--heeeEEECCCccEEEEeec--------cc--ceeeeeCCCcc--hhhhhhh-ccc-eeEEEEeccCccE
Confidence 334543332 4789999999999998653 33 44455767776 3432221 100 1237899999997
Q ss_pred EEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCee-ecC-CCCce
Q 007140 101 LIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFG-TPAVY 177 (616)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~-~l~-~~~~~ 177 (616)
|+.-+. ...|-++++ +.+.. .|. ..+.+
T Consensus 424 lVS~Sk-------------------------------------------------DsTLKvw~V~tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 424 LVSGSK-------------------------------------------------DSTLKVWDVRTKKLKQDLPGHADEV 454 (480)
T ss_pred EEEcCC-------------------------------------------------CceEEEEEeeeeeecccCCCCCceE
Confidence 665311 134555666 33333 243 34456
Q ss_pred eeeeECCCCcEEEEE
Q 007140 178 TAVEPSPDQKYVLIT 192 (616)
Q Consensus 178 ~~~~~SpDg~~i~~~ 192 (616)
..+.|||||++++-.
T Consensus 455 f~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 455 FAVDWSPDGQRVASG 469 (480)
T ss_pred EEEEecCCCceeecC
Confidence 689999999998744
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.13 E-value=0.077 Score=54.22 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=39.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-----EecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.++.+++-|.|.+++-= .-...+..||.++-.+ ++|--.. +-.+..+.||+.|..|+.+
T Consensus 169 ~Vsal~~Dp~GaR~~sG----------s~Dy~v~~wDf~gMdas~~~fr~l~P~E----~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSG----------SLDYTVKFWDFQGMDASMRSFRQLQPCE----THQINSLQYSVTGDQILVV 232 (641)
T ss_pred EEEEeeecCCCceeeec----------cccceEEEEecccccccchhhhccCccc----ccccceeeecCCCCeEEEE
Confidence 47889999999985432 2346778889987543 2331111 1225689999999987775
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.13 E-value=0.037 Score=60.32 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=41.5
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
+...+++-+|++||+-+. ...|-+++...+.....+...++ .+..+.+.|.++.|+..
T Consensus 99 ~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGNFLAVS 156 (933)
T ss_pred ceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccCC----ceeeeeEcCCCCEEEEE
Confidence 568899999999999763 36677777766544444322222 26789999999998886
No 120
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.13 E-value=0.098 Score=52.91 Aligned_cols=130 Identities=12% Similarity=0.275 Sum_probs=71.6
Q ss_pred EEEeCCC-CeeecCC-CCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccc
Q 007140 160 VLGSLDG-TAKDFGT-PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCY 237 (616)
Q Consensus 160 ~~~d~~g-~~~~l~~-~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~ 237 (616)
-+++.+| .+..|.. .+.+..+.|+.+|.+|+-...+ ..+.+||..+++.++...+--. |
T Consensus 260 riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD-------------~ttilwd~~~g~~~q~f~~~s~---~--- 320 (524)
T KOG0273|consen 260 RIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD-------------GTTILWDAHTGTVKQQFEFHSA---P--- 320 (524)
T ss_pred EEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC-------------ccEEEEeccCceEEEeeeeccC---C---
Confidence 3445555 2333432 2356789999999999877543 2578999887776664432111 0
Q ss_pred cCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCc-eEeccccccccceeecCCCceEEEe
Q 007140 238 NSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKLDLRFRSVSWCDDSLALVNE 316 (616)
Q Consensus 238 ~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~~~~~~~~~wspDg~~l~~~ 316 (616)
.-++.|..+.. |+.. ....-++++.+ ....+ ..+....+.+..+.|.|.|..|+..
T Consensus 321 ------~lDVdW~~~~~----F~ts----------~td~~i~V~kv---~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 321 ------ALDVDWQSNDE----FATS----------STDGCIHVCKV---GEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ------ccceEEecCce----Eeec----------CCCceEEEEEe---cCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 11345543322 2211 11122333333 21222 3344456667889999999987766
Q ss_pred eeccCccEEEEEEeCCC
Q 007140 317 TWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 317 ~~~~~~~~~l~~~d~~~ 333 (616)
+. ++..+||.+.-++
T Consensus 378 Sd--D~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 378 SD--DGTLKIWSMGQSN 392 (524)
T ss_pred cC--CCeeEeeecCCCc
Confidence 52 3556888875443
No 121
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.12 E-value=0.28 Score=47.53 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=75.3
Q ss_pred ceEEEEeCCC-CeeecCCCCceeeeeEC-CCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCC
Q 007140 157 AQLVLGSLDG-TAKDFGTPAVYTAVEPS-PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (616)
Q Consensus 157 ~~l~~~d~~g-~~~~l~~~~~~~~~~~S-pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (616)
.+|+++++.+ +...+..+. ...+.+. ++| .+++.... .+.++|..+++.+.+...+.....
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g-~l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~~~- 84 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDG-RLYVADSG--------------GIAVVDPDTGKVTVLADLPDGGVP- 84 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS-EEEEEEECTTS-EEEEEETT--------------CEEEEETTTTEEEEEEEEETTCSC-
T ss_pred CEEEEEECCCCeEEEEecCC-CceEEEEccCC-EEEEEEcC--------------ceEEEecCCCcEEEEeeccCCCcc-
Confidence 5788888844 444333333 3456666 664 44544321 356679888887777653211000
Q ss_pred ccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEE
Q 007140 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALV 314 (616)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~ 314 (616)
.....+....|+|. ||+.......... .....++.++. . ++.+.+...-.....+.|+||++.|+
T Consensus 85 ------~~~~ND~~vd~~G~--ly~t~~~~~~~~~---~~~g~v~~~~~---~-~~~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 85 ------FNRPNDVAVDPDGN--LYVTDSGGGGASG---IDPGSVYRIDP---D-GKVTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp ------TEEEEEEEE-TTS---EEEEEECCBCTTC---GGSEEEEEEET---T-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred ------cCCCceEEEcCCCC--EEEEecCCCcccc---ccccceEEECC---C-CeEEEEecCcccccceEECCcchhee
Confidence 01112467788886 6554321111000 00145777675 4 45555444334445689999998765
Q ss_pred EeeeccCccEEEEEEeCCC
Q 007140 315 NETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 315 ~~~~~~~~~~~l~~~d~~~ 333 (616)
.... ...+||+++++.
T Consensus 150 v~ds---~~~~i~~~~~~~ 165 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDA 165 (246)
T ss_dssp EEET---TTTEEEEEEEET
T ss_pred eccc---ccceeEEEeccc
Confidence 4331 223799999864
No 122
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.12 E-value=0.0021 Score=64.96 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=68.1
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCc
Q 007140 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 488 ~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS 566 (616)
...++..+...+|.|.. . ...+.|+|||.|+| +-++++...+ ......+++..||.|+. ||| =+
T Consensus 57 ~~~~~~~~~~~~y~p~~-~--~~~~~p~vly~HGG--------g~~~g~~~~~---~~~~~~~~~~~g~~vv~vdYr-la 121 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR-K--AAATAPVVLYLHGG--------GWVLGSLRTH---DALVARLAAAAGAVVVSVDYR-LA 121 (312)
T ss_pred cCCCCCceeEEEECCCC-C--CCCCCcEEEEEeCC--------eeeecChhhh---HHHHHHHHHHcCCEEEecCCC-CC
Confidence 44566667889999921 1 12345999999543 2223332222 11446788999999999 999 54
Q ss_pred cccCCCccCChhHHHHHHHHHHHHHHHHHcC---CccCCceEEEee
Q 007140 567 IGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG---VGLPILYLNTTA 609 (616)
Q Consensus 567 ~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~---~vD~~ri~~~~~ 609 (616)
..+ .|+ ..++|+.++++|+.++. -+|++||+|.+-
T Consensus 122 Pe~--~~p------~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~Gd 159 (312)
T COG0657 122 PEH--PFP------AALEDAYAAYRWLRANAAELGIDPSRIAVAGD 159 (312)
T ss_pred CCC--CCC------chHHHHHHHHHHHHhhhHhhCCCccceEEEec
Confidence 444 455 47899999999999874 389999999763
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.12 E-value=0.01 Score=60.31 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=46.5
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC-CceEecccCCCc-
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDI- 83 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~-g~~~~lt~~~~~- 83 (616)
|-||.+|+. ..|..-.|| ...|.|+.+....+... ++...|| ++.. .+.++|......
T Consensus 255 DQYI~Dm~n--TKGHia~lt---------~g~whP~~k~~FlT~s~-------DgtlRiW--dv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 255 DQYIRDMYN--TKGHIAELT---------CGCWHPDNKEEFLTCSY-------DGTLRIW--DVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred chhhhhhhc--cCCceeeee---------ccccccCcccceEEecC-------CCcEEEE--ecCCchhheeEEeeccCC
Confidence 457777754 445554444 56999999987776653 4445555 5543 233444433221
Q ss_pred cccccccceEEecCCcEEEE
Q 007140 84 CLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 84 ~~~~~~~~~~wspdg~~l~~ 103 (616)
.....+..+.|++||++|+-
T Consensus 315 g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred CcccCceeeecCCCcchhhh
Confidence 11223458899999998655
No 124
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.11 E-value=0.0047 Score=60.90 Aligned_cols=222 Identities=14% Similarity=0.208 Sum_probs=114.9
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+..++|.|+|++|.--+. .+.-.|| +..+=.-..+.+..+. .+..+.||++|.+++....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSgD~----- 158 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISGDK----- 158 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEcCC-----
Confidence 4778999999999887665 4567777 3211000111111111 2678999999998766310
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-Cee--ecCCCCceeeeeECCCC-c
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK--DFGTPAVYTAVEPSPDQ-K 187 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~--~l~~~~~~~~~~~SpDg-~ 187 (616)
+ ..|..++++- .++ +-...+.++.++|||+. +
T Consensus 159 ------------------g--------------------------G~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDsk 194 (464)
T KOG0284|consen 159 ------------------G--------------------------GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSK 194 (464)
T ss_pred ------------------C--------------------------ceEEecccchhhhHHhhHhhhhhhheeccCCCCce
Confidence 0 1111222211 111 11112346789999954 3
Q ss_pred EEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCC
Q 007140 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRG 266 (616)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~ 266 (616)
++-++ .+ ..|-+||.. .++.++|.... -.+....|-|... |+... +
T Consensus 195 F~t~S-dD-------------g~ikiWdf~~~kee~vL~GHg-------------wdVksvdWHP~kg--Liasg---s- 241 (464)
T KOG0284|consen 195 FLTCS-DD-------------GTIKIWDFRMPKEERVLRGHG-------------WDVKSVDWHPTKG--LIASG---S- 241 (464)
T ss_pred eEEec-CC-------------CeEEEEeccCCchhheeccCC-------------CCcceeccCCccc--eeEEc---c-
Confidence 43333 22 257788854 66666664311 1134688988865 43331 1
Q ss_pred CcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEE--eec
Q 007140 267 DANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDR 344 (616)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~ 344 (616)
..+.+-+||. -.+...-.|......+..+.|+|++..|+..+. + . .+-++|+.+. .+.... .+.
T Consensus 242 -------kDnlVKlWDp--rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk-D-~--~~kv~DiR~m-kEl~~~r~Hkk 307 (464)
T KOG0284|consen 242 -------KDNLVKLWDP--RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK-D-Q--SCKVFDIRTM-KELFTYRGHKK 307 (464)
T ss_pred -------CCceeEeecC--CCcchhhhhhhccceEEEEEEcCCCCeeEEccC-C-c--eEEEEehhHh-HHHHHhhcchh
Confidence 1123444554 222222234444556678899999976665442 1 1 4666777642 111111 122
Q ss_pred ccccccCCCCCCCeeeCCCCCEEEEEee
Q 007140 345 VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 345 ~~~~~~~~~g~~~~~~s~dgk~l~~~~~ 372 (616)
++.. +.|.|--..|+....
T Consensus 308 dv~~---------~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 308 DVTS---------LTWHPLNESLFTSGG 326 (464)
T ss_pred hhee---------eccccccccceeecc
Confidence 2322 778887666666543
No 125
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.09 E-value=0.012 Score=59.49 Aligned_cols=78 Identities=9% Similarity=0.128 Sum_probs=47.1
Q ss_pred eEEeecCCCCCCCCceeeecCCCCC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccc
Q 007140 7 IGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (616)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (616)
|+|-++.+ ..+.|+.+.... .+..++||++|.++.-.+ -...|-++|+++|+...-+.....
T Consensus 239 vklW~vy~-----~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s----------fD~~lKlwDtETG~~~~~f~~~~~-- 301 (503)
T KOG0282|consen 239 VKLWNVYD-----DRRCLRTFKGHRKPVRDASFNNCGTSFLSAS----------FDRFLKLWDTETGQVLSRFHLDKV-- 301 (503)
T ss_pred EEEEEEec-----CcceehhhhcchhhhhhhhccccCCeeeeee----------cceeeeeeccccceEEEEEecCCC--
Confidence 55666654 222333233332 478999999999865543 235566679999975443323221
Q ss_pred cccccceEEecCCcEEEEE
Q 007140 86 NAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 86 ~~~~~~~~wspdg~~l~~~ 104 (616)
.....+-||+..++++
T Consensus 302 ---~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 302 ---PTCVKFHPDNQNIFLV 317 (503)
T ss_pred ---ceeeecCCCCCcEEEE
Confidence 4567788999766664
No 126
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.06 E-value=0.12 Score=52.86 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=84.0
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCe--EEEEEeeccccccCCCceeEEEEECCCCce-EecccC
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFES 80 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~ 80 (616)
...|+++++-+.-..+....|. +. .+....|||-|++ |||..-.. + +....+-++.+..+.. +..+-.
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr--~~--gi~dFsisP~~n~~~la~~tPEk---~--~kpa~~~i~sIp~~s~l~tk~lf 221 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLR--PV--GILDFSISPEGNHDELAYWTPEK---L--NKPAMVRILSIPKNSVLVTKNLF 221 (561)
T ss_pred cCeEEEEecCCccccCchhhcc--cc--ceeeEEecCCCCCceEEEEcccc---C--CCCcEEEEEEccCCCeeeeeeeE
Confidence 4678888862211112222222 12 4788999997544 66654331 1 2234455555544432 222111
Q ss_pred CCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEE
Q 007140 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (616)
Q Consensus 81 ~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~ 160 (616)
.- .--++.|-+.|+.|.+.+.... . .+ -.+++.+.||
T Consensus 222 k~-----~~~qLkW~~~g~~ll~l~~t~~--------------------k---------------sn---KsyfgesnLy 258 (561)
T COG5354 222 KV-----SGVQLKWQVLGKYLLVLVMTHT--------------------K---------------SN---KSYFGESNLY 258 (561)
T ss_pred ee-----cccEEEEecCCceEEEEEEEee--------------------e---------------cc---cceeccceEE
Confidence 11 1237899999999888632110 0 00 1233568899
Q ss_pred EEeCCC-Ceeec-CCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 161 LGSLDG-TAKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 161 ~~d~~g-~~~~l-~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
++++++ ..+.. ...+.+.++.|+|++++.++.+-.. +..+-.+|+.+.
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----------pa~~s~~~lr~N 308 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM-----------PASVSVFDLRGN 308 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEeccc-----------ccceeecccccc
Confidence 999976 33322 2233567999999999888776322 234556677665
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.014 Score=63.50 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=42.8
Q ss_pred CcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCc--cc-cccccceEEecCCcEEEEE
Q 007140 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI--CL-NAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 31 ~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~--~~-~~~~~~~~wspdg~~l~~~ 104 (616)
..+..+.++|.|+.||...- ..+|.+|++..+.. ..++..... .. +.....++|+|+|..+++.
T Consensus 139 apVl~l~~~p~~~fLAvss~----------dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSC----------DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred CceeeeeEcCCCCEEEEEec----------CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence 35889999999999998763 35777778887753 344333211 11 2234588999997777664
No 128
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=97.00 E-value=0.0018 Score=65.89 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=62.7
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC-chHHHHhhCCeEEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVL 559 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~la~~Gy~Vl 559 (616)
..+.+.++- .|.+|+|+|.+|.+ + .|.|+||..++ ..++..-.+ .+..+|+.+|+++|
T Consensus 164 ~i~~v~iP~-eg~~I~g~LhlP~~---~--~p~P~VIv~gG---------------lDs~qeD~~~l~~~~l~~rGiA~L 222 (411)
T PF06500_consen 164 PIEEVEIPF-EGKTIPGYLHLPSG---E--KPYPTVIVCGG---------------LDSLQEDLYRLFRDYLAPRGIAML 222 (411)
T ss_dssp EEEEEEEEE-TTCEEEEEEEESSS---S--S-EEEEEEE-----------------TTS-GGGGHHHHHCCCHHCT-EEE
T ss_pred CcEEEEEee-CCcEEEEEEEcCCC---C--CCCCEEEEeCC---------------cchhHHHHHHHHHHHHHhCCCEEE
Confidence 677788875 56999999999983 2 25698888743 133321111 33457899999999
Q ss_pred E-CCCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 560 A-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 560 ~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
. |.= ++|+-..+.- .+. ... ..+.++||.+.++||.+|||+-+
T Consensus 223 tvDmP--G~G~s~~~~l~~D~-~~l---~~aVLd~L~~~p~VD~~RV~~~G 267 (411)
T PF06500_consen 223 TVDMP--GQGESPKWPLTQDS-SRL---HQAVLDYLASRPWVDHTRVGAWG 267 (411)
T ss_dssp EE--T--TSGGGTTT-S-S-C-CHH---HHHHHHHHHHSTTEEEEEEEEEE
T ss_pred EEccC--CCcccccCCCCcCH-HHH---HHHHHHHHhcCCccChhheEEEE
Confidence 9 665 3676544332 111 011 23568899999999999999854
No 129
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.99 E-value=0.014 Score=56.93 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=51.8
Q ss_pred ceeEEeecCCCCCCCCceeeecCCC---CC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccC
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPD---GA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~---~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~ 80 (616)
..|||++|++ -+.|..+.. ++ ..-..+.++.+.+|||-..+ ...+|.++|+.+=++.-....
T Consensus 106 e~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~a 171 (391)
T KOG2110|consen 106 ESIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINA 171 (391)
T ss_pred ccEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEe
Confidence 3589999865 344433222 21 24455666677799998765 257889999865333222222
Q ss_pred CCccccccccceEEecCCcEEEEE
Q 007140 81 PDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 81 ~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.++. +..++|++||..|+-.
T Consensus 172 H~~~----lAalafs~~G~llATA 191 (391)
T KOG2110|consen 172 HKGP----LAALAFSPDGTLLATA 191 (391)
T ss_pred cCCc----eeEEEECCCCCEEEEe
Confidence 2222 6789999999998875
No 130
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=96.99 E-value=0.0017 Score=61.03 Aligned_cols=96 Identities=21% Similarity=0.185 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEECCCCCcc--ccCCCc
Q 007140 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII--GEGDKL 573 (616)
Q Consensus 496 ~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~n~R~GS~--GyG~~f 573 (616)
.-.||.|++...+ |+|+||..|+ ++|. +..|.... .+.++--++||+|+. +. ++. .-..-|
T Consensus 2 ~Y~lYvP~~~~~~---~~PLVv~LHG--------~~~~---a~~~~~~s-~~~~lAd~~Gfivvy-P~-~~~~~~~~~cw 64 (220)
T PF10503_consen 2 SYRLYVPPGAPRG---PVPLVVVLHG--------CGQS---AEDFAAGS-GWNALADREGFIVVY-PE-QSRRANPQGCW 64 (220)
T ss_pred cEEEecCCCCCCC---CCCEEEEeCC--------CCCC---HHHHHhhc-CHHHHhhcCCeEEEc-cc-ccccCCCCCcc
Confidence 4579999987542 4588888843 1211 12332111 334555667999999 33 321 111111
Q ss_pred c---C-ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 574 P---N-DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 574 ~---~-~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
. . ...|..+...|.+.|++++++.-||++||.+|+
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVyv~G 103 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVYVTG 103 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCceeeEE
Confidence 1 1 233455777888999999999889999999997
No 131
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.89 E-value=1.5 Score=51.80 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=23.9
Q ss_pred eeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEe
Q 007140 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (616)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (616)
.++++|++..|+++... ...|+++|..++....+
T Consensus 687 gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred EEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEE
Confidence 68999977777777432 23688999877665544
No 132
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.86 E-value=0.48 Score=46.51 Aligned_cols=225 Identities=15% Similarity=0.135 Sum_probs=116.9
Q ss_pred ccceEEccC-CCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 33 INFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 33 ~~~~~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
...+..+|+ +.-++|.+ + ...-++++|..+|+..+....+++. -.++--.||+||++|+.+-.+
T Consensus 7 gH~~a~~p~~~~avafaR-R--------PG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd---- 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFAR-R--------PGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND---- 71 (305)
T ss_pred ccceeeCCCCCeEEEEEe-C--------CCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc----
Confidence 678899994 55555544 3 4688999999999866544333321 113466899999987664110
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCCCee---ecCCCC-ceeeeeECCCCc
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK---DFGTPA-VYTAVEPSPDQK 187 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g~~~---~l~~~~-~~~~~~~SpDg~ 187 (616)
+.. ....|-++|+....+ .....+ .-..+.|.|||+
T Consensus 72 --------------------------~~~--------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~ 111 (305)
T PF07433_consen 72 --------------------------YET--------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGE 111 (305)
T ss_pred --------------------------cCC--------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCC
Confidence 000 245777888853322 333322 224788999999
Q ss_pred EEEEEeccC---CCcc--cccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEe
Q 007140 188 YVLITSMHR---PYSY--KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (616)
Q Consensus 188 ~i~~~~~~~---~~~~--~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (616)
.|++..-.. |..- .+....-...|.++|..+++...-..++-... ....+-+.+.+||. +++ ..
T Consensus 112 tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~--------~lSiRHLa~~~~G~--V~~-a~ 180 (305)
T PF07433_consen 112 TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH--------QLSIRHLAVDGDGT--VAF-AM 180 (305)
T ss_pred EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc--------ccceeeEEecCCCc--EEE-EE
Confidence 988773221 1110 01011112366777766554322212211100 12245688888875 433 34
Q ss_pred ecCCCcccccCCCceeEeccCCCCCCCCceEec-------cccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-------KLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 263 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~-------~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
+..++.. .....+...+. ++..+.+. .......++++++||..++..+-. .+ .+.++|.++
T Consensus 181 Q~qg~~~---~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-Gg--~~~~~d~~t 248 (305)
T PF07433_consen 181 QYQGDPG---DAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-GG--RVAVWDAAT 248 (305)
T ss_pred ecCCCCC---ccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-CC--EEEEEECCC
Confidence 4433322 11123333232 11222221 122345788999998876555422 23 566667776
No 133
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.86 E-value=0.46 Score=45.39 Aligned_cols=234 Identities=12% Similarity=0.139 Sum_probs=125.5
Q ss_pred ceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC-ceEecccCCCccccccccceEEecCCc
Q 007140 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNST 99 (616)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g-~~~~lt~~~~~~~~~~~~~~~wspdg~ 99 (616)
.+.|.+..+ .+....||+|+++|.-.+. ...|.+||.-+. |...|+-... . +-..++||.|+
T Consensus 48 rr~LkGH~~--Ki~~~~ws~Dsr~ivSaSq----------DGklIvWDs~TtnK~haipl~s~-W----VMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLN--KIYAMDWSTDSRRIVSASQ----------DGKLIVWDSFTTNKVHAIPLPSS-W----VMTCAYSPSGN 110 (343)
T ss_pred EEEeccccc--ceeeeEecCCcCeEEeecc----------CCeEEEEEcccccceeEEecCce-e----EEEEEECCCCC
Confidence 355554433 4889999999999887654 356777788765 4444432222 2 56889999999
Q ss_pred EEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC---CCC---eeecC-
Q 007140 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DGT---AKDFG- 172 (616)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~---~g~---~~~l~- 172 (616)
.|+.- | + | ..-.||.+.. +|. .+.|.
T Consensus 111 ~VAcG-------------------------G-----------L----d-------N~Csiy~ls~~d~~g~~~v~r~l~g 143 (343)
T KOG0286|consen 111 FVACG-------------------------G-----------L----D-------NKCSIYPLSTRDAEGNVRVSRELAG 143 (343)
T ss_pred eEEec-------------------------C-----------c----C-------ceeEEEecccccccccceeeeeecC
Confidence 88772 1 0 0 0122332221 221 22333
Q ss_pred CCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE-EEecCCCCCCCCCccccCccCCCCcceeec
Q 007140 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRA 251 (616)
Q Consensus 173 ~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wsp 251 (616)
...+.+-..|-+|+. |+-.+- ....-+||++.++. +.+.... .....+..+|
T Consensus 144 HtgylScC~f~dD~~-ilT~SG-------------D~TCalWDie~g~~~~~f~GH~-------------gDV~slsl~p 196 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDNH-ILTGSG-------------DMTCALWDIETGQQTQVFHGHT-------------GDVMSLSLSP 196 (343)
T ss_pred ccceeEEEEEcCCCc-eEecCC-------------CceEEEEEcccceEEEEecCCc-------------ccEEEEecCC
Confidence 334566778887764 443321 12567899986643 3332211 1122456677
Q ss_pred -CCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceE-eccccccccceeecCCCceEEEeeeccCccEEEEEE
Q 007140 252 -DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (616)
Q Consensus 252 -dg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (616)
+++- |+.- .-....++||. -.+..++ ....+..+..+.|-|+|..|+..+. ++.-+| +
T Consensus 197 ~~~nt---FvSg----------~cD~~aklWD~---R~~~c~qtF~ghesDINsv~ffP~G~afatGSD--D~tcRl--y 256 (343)
T KOG0286|consen 197 SDGNT---FVSG----------GCDKSAKLWDV---RSGQCVQTFEGHESDINSVRFFPSGDAFATGSD--DATCRL--Y 256 (343)
T ss_pred CCCCe---EEec----------ccccceeeeec---cCcceeEeecccccccceEEEccCCCeeeecCC--CceeEE--E
Confidence 5542 3311 01123344555 3334444 4455667888999999998887652 233344 6
Q ss_pred eCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 330 CPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 330 d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
|+... ....++..+.. .-|...+.+|..|+.|+.-.
T Consensus 257 DlRaD--~~~a~ys~~~~----~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 257 DLRAD--QELAVYSHDSI----ICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eecCC--cEEeeeccCcc----cCCceeEEEcccccEEEeee
Confidence 66652 11222332211 11333488888898777543
No 134
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=96.82 E-value=0.0035 Score=59.59 Aligned_cols=93 Identities=16% Similarity=0.034 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccc-cCCC
Q 007140 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIG-EGDK 572 (616)
Q Consensus 495 l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~G-yG~~ 572 (616)
++++|..|.+- + |.|+||.++.. .++....-.....||++||.|+. |+- +-.+ .-..
T Consensus 1 ~~ay~~~P~~~--~---~~~~Vvv~~d~---------------~G~~~~~~~~ad~lA~~Gy~v~~pD~f-~~~~~~~~~ 59 (218)
T PF01738_consen 1 IDAYVARPEGG--G---PRPAVVVIHDI---------------FGLNPNIRDLADRLAEEGYVVLAPDLF-GGRGAPPSD 59 (218)
T ss_dssp EEEEEEEETTS--S---SEEEEEEE-BT---------------TBS-HHHHHHHHHHHHTT-EEEEE-CC-CCTS--CCC
T ss_pred CeEEEEeCCCC--C---CCCEEEEEcCC---------------CCCchHHHHHHHHHHhcCCCEEecccc-cCCCCCccc
Confidence 57899999875 2 23888888321 12210000346789999999999 866 3222 1111
Q ss_pred ccC--Chh-------HHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 573 LPN--DRF-------VEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 573 f~~--~~~-------g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
... ..+ .....+|+.+++++|.+++-+|++|||+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vG 104 (218)
T PF01738_consen 60 PEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVG 104 (218)
T ss_dssp HHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEE
Confidence 111 112 124568899999999999989999999987
No 135
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.79 E-value=0.19 Score=49.99 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=25.4
Q ss_pred eEEEEeC-CCCeeecCCC-C-ceeeeeECCCCcEEEEEeccC
Q 007140 158 QLVLGSL-DGTAKDFGTP-A-VYTAVEPSPDQKYVLITSMHR 196 (616)
Q Consensus 158 ~l~~~d~-~g~~~~l~~~-~-~~~~~~~SpDg~~i~~~~~~~ 196 (616)
.++.+|+ .|....+... + ++..++|.|-+++|+..+..+
T Consensus 146 s~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 146 SVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 4556677 5655544332 2 556889999999988766544
No 136
>PRK10115 protease 2; Provisional
Probab=96.78 E-value=0.47 Score=53.26 Aligned_cols=82 Identities=15% Similarity=0.213 Sum_probs=51.3
Q ss_pred ceeEEeecCCCCCCCC--ceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC--ceEecccC
Q 007140 5 TGIGIHRLLPDDSLGP--EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFES 80 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~--~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g--~~~~lt~~ 80 (616)
..|+++++.. |+ ...+. .. .....|+|||+.|+|.+.... .....+||++++.++ +.+.|+..
T Consensus 153 ~~l~v~d~~t----g~~l~~~i~---~~--~~~~~w~~D~~~~~y~~~~~~----~~~~~~v~~h~lgt~~~~d~lv~~e 219 (686)
T PRK10115 153 YGIRFRNLET----GNWYPELLD---NV--EPSFVWANDSWTFYYVRKHPV----TLLPYQVWRHTIGTPASQDELVYEE 219 (686)
T ss_pred EEEEEEECCC----CCCCCcccc---Cc--ceEEEEeeCCCEEEEEEecCC----CCCCCEEEEEECCCChhHCeEEEee
Confidence 3578888864 65 33332 21 245999999999999987411 024479999999988 56677654
Q ss_pred CCccccccccceEEec-CCcEEEE
Q 007140 81 PDICLNAVFGSFVWVN-NSTLLIF 103 (616)
Q Consensus 81 ~~~~~~~~~~~~~wsp-dg~~l~~ 103 (616)
.+.. ..-..|.. |++.+++
T Consensus 220 ~~~~----~~~~~~~s~d~~~l~i 239 (686)
T PRK10115 220 KDDT----FYVSLHKTTSKHYVVI 239 (686)
T ss_pred CCCC----EEEEEEEcCCCCEEEE
Confidence 3321 11123444 7887654
No 137
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=96.76 E-value=0.0014 Score=71.81 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=62.9
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccc
Q 007140 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIG 568 (616)
Q Consensus 490 ~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~G 568 (616)
-|=+.|. ++.|.+..... ++||+||+|+|.+. .|+.... .+....+++.++.+|+. |||.|.-|
T Consensus 106 EDCL~Ln--I~~P~~~~~~~--~lPV~v~ihGG~f~--------~G~~~~~---~~~~~~~~~~~~vivVt~nYRlg~~G 170 (535)
T PF00135_consen 106 EDCLYLN--IYTPSNASSNS--KLPVMVWIHGGGFM--------FGSGSFP---PYDGASLAASKDVIVVTINYRLGAFG 170 (535)
T ss_dssp S---EEE--EEEETSSSSTT--SEEEEEEE--STTT--------SSCTTSG---GGHTHHHHHHHTSEEEEE----HHHH
T ss_pred chHHHHh--hhhcccccccc--ccceEEEeeccccc--------CCCcccc---cccccccccCCCEEEEEecccccccc
Confidence 3545554 89998877543 56999999765433 2222100 11234678899999999 99999988
Q ss_pred cCCCccCChh-HHHHHHHHHHHHHHHHHc--CC-ccCCceEEEe
Q 007140 569 EGDKLPNDRF-VEQLVSSAEAAVEEVVRR--GV-GLPILYLNTT 608 (616)
Q Consensus 569 yG~~f~~~~~-g~~~~~D~~~~v~~l~~~--~~-vD~~ri~~~~ 608 (616)
|=.--....- |+..+.||..|++|+.+. .+ -||+||=|-+
T Consensus 171 fl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G 214 (535)
T PF00135_consen 171 FLSLGDLDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFG 214 (535)
T ss_dssp H-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEE
T ss_pred cccccccccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeee
Confidence 7432222222 455699999999999876 23 7999987654
No 138
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.76 E-value=1.2 Score=49.47 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=52.7
Q ss_pred ccceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCC
Q 007140 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (616)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~ 82 (616)
+.+.+|+.+.+ ..+.+ ..+.....+.|||||+.++|..+.. ....++|+++.. | .++....
T Consensus 41 ~~~~~~~~d~~------~~~~~---~~~~~~~~~~~spdg~~~~~~~~~~------~~~~~l~l~~~~-g---~~~~~~~ 101 (620)
T COG1506 41 YKSSLWVSDGK------TVRLL---TFGGGVSELRWSPDGSVLAFVSTDG------GRVAQLYLVDVG-G---LITKTAF 101 (620)
T ss_pred cccceEEEecc------ccccc---ccCCcccccccCCCCCEEEEEeccC------CCcceEEEEecC-C---ceeeeec
Confidence 44567776542 12233 2334689999999999999998431 346899999988 5 2222221
Q ss_pred ccccccccceEEecCCcEEEEE
Q 007140 83 ICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~~ 104 (616)
. ++...|+++|+.+++.
T Consensus 102 -~----v~~~~~~~~g~~~~~~ 118 (620)
T COG1506 102 -G----VSDARWSPDGDRIAFL 118 (620)
T ss_pred -c----cccceeCCCCCeEEEE
Confidence 1 5688999999999884
No 139
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.068 Score=51.24 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEe
Q 007140 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP 76 (616)
Q Consensus 29 ~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~ 76 (616)
...-....+|||||++|+--+- ++ -|-+|+.-+|+.+.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSv--------DG--FiEVWny~~GKlrK 249 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSV--------DG--FIEVWNYTTGKLRK 249 (508)
T ss_pred cccchhheeeCCCCceEeeccc--------cc--eeeeehhccchhhh
Confidence 3334567899999998765432 33 44455777887653
No 140
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.70 E-value=0.29 Score=47.99 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=97.2
Q ss_pred cceEEEEeC-CCCee-ecCCCC---ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCC
Q 007140 156 TAQLVLGSL-DGTAK-DFGTPA---VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (616)
Q Consensus 156 ~~~l~~~d~-~g~~~-~l~~~~---~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (616)
-..++++|. +|+.. .+..++ ++.-..|||||++|+.+.++.+. ....|-+||.. ...+.+.+++..
T Consensus 27 G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~--------g~G~IgVyd~~-~~~~ri~E~~s~ 97 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET--------GRGVIGVYDAA-RGYRRIGEFPSH 97 (305)
T ss_pred CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC--------CcEEEEEEECc-CCcEEEeEecCC
Confidence 456888999 77544 454443 45567999999999988765331 24578899988 233334332211
Q ss_pred CCCCccccCccCCCCcceeecCCCceEEEEE-----eecCCCccccc-CCCceeEeccCCCCCCCCceE---ecc--ccc
Q 007140 231 EDIPVCYNSVREGMRSISWRADKPSTLYWVE-----AQDRGDANVEV-SPRDIIYTQPAEPAEGEKPEI---LHK--LDL 299 (616)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~-----~~d~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~---l~~--~~~ 299 (616)
.-|.-.+.|.|||+. |+..+ ..+.+....+. .....+..++. .+|+... |.. ...
T Consensus 98 ----------GIGPHel~l~pDG~t-LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~---~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 98 ----------GIGPHELLLMPDGET-LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA---RSGALLEQVELPPDLHQL 163 (305)
T ss_pred ----------CcChhhEEEcCCCCE-EEEEcCCCccCcccCceecChhhcCCceEEEec---CCCceeeeeecCcccccc
Confidence 122346889999973 55442 11111112221 12233333455 4455432 432 223
Q ss_pred cccceeecCCCceEEEeeec-cC--ccEEEEEEeCCCCCCCceEEe--ecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007140 300 RFRSVSWCDDSLALVNETWY-KT--SQTRTWLVCPGSKDVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~-~~--~~~~l~~~d~~~~~~~~~~l~--~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~ 372 (616)
.....+|.+||..++...+. +. ...-|.+..... ..+.+. +.... .+.. ....++.+++|..+++++.
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~-~l~~-Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWR-RLNG-YIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHH-hhCC-ceEEEEEeCCCCEEEEECC
Confidence 56788999999864443322 11 122344444332 222221 00000 0000 0113788889988887763
No 141
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.69 E-value=0.065 Score=52.06 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=47.1
Q ss_pred CCceeeecCCCC--CcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEec
Q 007140 19 GPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (616)
Q Consensus 19 g~~~~lt~~~~~--~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (616)
+..+++...... .....+.+||||+.+||+... ++...|++....+ ..+.+.... . +..++|++
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~-------~~~~~L~~~~~~~-~~~~~~~g~--~----l~~PS~d~ 75 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEG-------DGGRSLYVGPAGG-PVRPVLTGG--S----LTRPSWDP 75 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEEc-------CCCCEEEEEcCCC-cceeeccCC--c----cccccccC
Confidence 455555533222 147899999999999999832 4578999988654 444442111 2 67899999
Q ss_pred CCcEEEE
Q 007140 97 NSTLLIF 103 (616)
Q Consensus 97 dg~~l~~ 103 (616)
+|...++
T Consensus 76 ~g~~W~v 82 (253)
T PF10647_consen 76 DGWVWTV 82 (253)
T ss_pred CCCEEEE
Confidence 9775444
No 142
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=96.68 E-value=0.016 Score=65.32 Aligned_cols=61 Identities=20% Similarity=0.018 Sum_probs=46.2
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc--CCcc------------CCceEEEee
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GVGL------------PILYLNTTA 609 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~--~~vD------------~~ri~~~~~ 609 (616)
...++|+.+||+|+. |.| |+.+-+-.| ..++..+.+|..+.|+||..+ ++.| ..|||+++.
T Consensus 270 ~~~~~~~~rGYaVV~~D~R-Gtg~SeG~~--~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGI-GTRGSDGCP--TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred hHHHHHHhCCeEEEEEcCC-CCCCCCCcC--ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 456899999999999 999 864422222 234567999999999999964 3446 589999885
No 143
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.8 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.3
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEec
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~l 77 (616)
-..|.|.|+.+.|.|+= -.+..|+.++.++|+.+.+
T Consensus 27 gEgP~w~~~~~~L~w~D---------I~~~~i~r~~~~~g~~~~~ 62 (307)
T COG3386 27 GEGPVWDPDRGALLWVD---------ILGGRIHRLDPETGKKRVF 62 (307)
T ss_pred ccCccCcCCCCEEEEEe---------CCCCeEEEecCCcCceEEE
Confidence 45899999999988762 3568999999988875555
No 144
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.67 E-value=0.01 Score=59.53 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=68.8
Q ss_pred eeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCC--ccCCCCCchHHHHhhCCeEEE
Q 007140 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN--EFSGMTPTSSLIFLARRFAVL 559 (616)
Q Consensus 482 ~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~q~la~~Gy~Vl 559 (616)
.+.|++. ....|..+||+|..-.+.+ .+|+|||.|+| |-..++.+ .| .....++-++.+-+|+
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~~~~~--~~p~lvyfHGG--------Gf~~~S~~~~~y---~~~~~~~a~~~~~vvv 127 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSSSSET--KLPVLVYFHGG--------GFCLGSANSPAY---DSFCTRLAAELNCVVV 127 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCCCccc--CceEEEEEeCC--------ccEeCCCCCchh---HHHHHHHHHHcCeEEE
Confidence 3444554 4456788999998877633 25999999442 22233211 11 1133455678899999
Q ss_pred E-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc----CCccCCceEEEee
Q 007140 560 A-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR----GVGLPILYLNTTA 609 (616)
Q Consensus 560 ~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~----~~vD~~ri~~~~~ 609 (616)
. ||| = -.+++- ...++|..+|+.|+.++ -.+|++||+|-+.
T Consensus 128 SVdYR-L----APEh~~----Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GD 173 (336)
T KOG1515|consen 128 SVDYR-L----APEHPF----PAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGD 173 (336)
T ss_pred ecCcc-c----CCCCCC----CccchHHHHHHHHHHHhHHHHhCCCcccEEEEcc
Confidence 9 999 2 333331 24699999999999985 4699999998764
No 145
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.9 Score=47.71 Aligned_cols=56 Identities=20% Similarity=0.402 Sum_probs=41.1
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+-..|| ..+.||... ...||+++..+|+...+....+. .+..+.|+++|++|+.-
T Consensus 180 ~nlldWs-s~n~laVal-----------g~~vylW~~~s~~v~~l~~~~~~----~vtSv~ws~~G~~LavG 235 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVAL-----------GQSVYLWSASSGSVTELCSFGEE----LVTSVKWSPDGSHLAVG 235 (484)
T ss_pred hhHhhcc-cCCeEEEEe-----------cceEEEEecCCCceEEeEecCCC----ceEEEEECCCCCEEEEe
Confidence 4556899 344455543 37899999999998888765322 26799999999999884
No 146
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=96.59 E-value=0.027 Score=55.60 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=57.7
Q ss_pred eEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-C
Q 007140 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-G 561 (616)
Q Consensus 483 e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n 561 (616)
+.+.|.. +|.+|.|+|+.|.+-+ + |.+|+++++. ..+-+.+.. .......|+++||.|+. |
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~~--~----~~vv~i~gg~--------~~~~g~~~~---~~~la~~l~~~G~~v~~~D 64 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGASH--T----TGVLIVVGGP--------QYRVGSHRQ---FVLLARRLAEAGFPVLRFD 64 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCCC--C----CeEEEEeCCc--------cccCCchhH---HHHHHHHHHHCCCEEEEeC
Confidence 4577764 7899999999997532 1 2333331110 001010110 01335789999999999 9
Q ss_pred CCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHcCCccCCceEEE
Q 007140 562 PSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNT 607 (616)
Q Consensus 562 ~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~ 607 (616)
+| | +|+.-.. ..+ ....+|+.+++++|.++- -.-++|.+-
T Consensus 65 l~-G---~G~S~~~~~~~-~~~~~d~~~~~~~l~~~~-~g~~~i~l~ 105 (274)
T TIGR03100 65 YR-G---MGDSEGENLGF-EGIDADIAAAIDAFREAA-PHLRRIVAW 105 (274)
T ss_pred CC-C---CCCCCCCCCCH-HHHHHHHHHHHHHHHhhC-CCCCcEEEE
Confidence 99 6 5543221 222 235689999999998651 112456554
No 147
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.53 E-value=0.47 Score=55.92 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=25.3
Q ss_pred eeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEe
Q 007140 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (616)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (616)
..++++|||++|+++... ...|.++|++++....+
T Consensus 743 ~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 743 SGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred cEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEE
Confidence 468999999998887543 24788999876554443
No 148
>PLN02442 S-formylglutathione hydrolase
Probab=96.52 E-value=0.012 Score=58.33 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=41.4
Q ss_pred ceeEEEEEC-CCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEE
Q 007140 481 QKEMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (616)
Q Consensus 481 ~~e~i~~~~-~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl 559 (616)
..+.+++.+ .=|.++...||+|+. .+++++ |+|++.++. .+....|.... ...++++.+||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~--Pvv~~lHG~-----------~~~~~~~~~~~-~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKV--PVLYWLSGL-----------TCTDENFIQKS-GAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCC--CEEEEecCC-----------CcChHHHHHhh-hHHHHHhhcCeEEE
Confidence 455556655 356789999999994 444555 888888321 11112231111 12356788899999
Q ss_pred E-CCC
Q 007140 560 A-GPS 563 (616)
Q Consensus 560 ~-n~R 563 (616)
. |..
T Consensus 82 ~pd~~ 86 (283)
T PLN02442 82 APDTS 86 (283)
T ss_pred ecCCC
Confidence 9 854
No 149
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=96.43 E-value=0.029 Score=55.48 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=62.0
Q ss_pred ceeEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC-chHH-HHhhCCeE
Q 007140 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSL-IFLARRFA 557 (616)
Q Consensus 481 ~~e~i~~~~~-DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q-~la~~Gy~ 557 (616)
..+.+++.+. -|.++...||+|+++.. ++ .|+|++.++ .+.....+.. ...+ +.+..||+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~~--~P~vvllHG--------------~~~~~~~~~~~~~~~~la~~~g~~ 74 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAA-GP--VPVLWYLSG--------------LTCTHENFMIKAGAQRFAAEHGLA 74 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccC-CC--CCEEEEccC--------------CCCCccHHHhhhHHHHHHhhcCcE
Confidence 4455566554 45788899999998654 23 488888832 2111111110 1233 44567999
Q ss_pred EEE-CC--CCCccc----------cCCCc-cC---ChhH--HHHHHHHHHHHHHHHHc-CCccCCceEEEee
Q 007140 558 VLA-GP--SIPIIG----------EGDKL-PN---DRFV--EQLVSSAEAAVEEVVRR-GVGLPILYLNTTA 609 (616)
Q Consensus 558 Vl~-n~--R~GS~G----------yG~~f-~~---~~~g--~~~~~D~~~~v~~l~~~-~~vD~~ri~~~~~ 609 (616)
|+. |. | |+.- .|..| .+ ..++ ......+++.+..++++ --+|++|++|.+-
T Consensus 75 Vv~Pd~~~~-g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~ 145 (275)
T TIGR02821 75 LVAPDTSPR-GTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGH 145 (275)
T ss_pred EEEeCCCCC-cCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEE
Confidence 999 86 6 6531 12221 11 1111 12345556666666655 3389999998874
No 150
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.40 E-value=0.98 Score=43.39 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=39.4
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce--EecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....|+|||..+|--. -..+|++|++-+.+. -.+..++. . +-.+.|..|+..|+..
T Consensus 49 eI~~~~F~P~gs~~aSgG----------~Dr~I~LWnv~gdceN~~~lkgHsg-A----VM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG----------SDRAIVLWNVYGDCENFWVLKGHSG-A----VMELHGMRDGSHILSC 108 (338)
T ss_pred eEEEEEECCCCCeEeecC----------CcceEEEEeccccccceeeeccccc-e----eEeeeeccCCCEEEEe
Confidence 578899999999765432 247899999765432 22322222 1 5689999999987764
No 151
>PLN00021 chlorophyllase
Probab=96.37 E-value=0.013 Score=58.68 Aligned_cols=86 Identities=12% Similarity=-0.045 Sum_probs=54.3
Q ss_pred cEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC-chHHHHhhCCeEEEE-CCCCCccccC
Q 007140 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA-GPSIPIIGEG 570 (616)
Q Consensus 493 ~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~la~~Gy~Vl~-n~R~GS~GyG 570 (616)
..+++.+++|.. +.++ |+||+.|+ ..... ..| .....|+++||+|+. |++ |..+-
T Consensus 37 ~~~p~~v~~P~~---~g~~--PvVv~lHG--------------~~~~~--~~y~~l~~~Las~G~~VvapD~~-g~~~~- 93 (313)
T PLN00021 37 PPKPLLVATPSE---AGTY--PVLLFLHG--------------YLLYN--SFYSQLLQHIASHGFIVVAPQLY-TLAGP- 93 (313)
T ss_pred CCceEEEEeCCC---CCCC--CEEEEECC--------------CCCCc--ccHHHHHHHHHhCCCEEEEecCC-CcCCC-
Confidence 468889999964 2335 88888832 11111 011 335678999999999 988 63221
Q ss_pred CCccCChhHHHHHHHHHHHHHHHHHc--------CCccCCceEEEe
Q 007140 571 DKLPNDRFVEQLVSSAEAAVEEVVRR--------GVGLPILYLNTT 608 (616)
Q Consensus 571 ~~f~~~~~g~~~~~D~~~~v~~l~~~--------~~vD~~ri~~~~ 608 (616)
. ...+++|..+.++|+.+. ..+|++|+++-+
T Consensus 94 ----~---~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~G 132 (313)
T PLN00021 94 ----D---GTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAG 132 (313)
T ss_pred ----C---chhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEE
Confidence 1 123456777777777642 247888888876
No 152
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.36 E-value=1.2 Score=43.94 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=68.4
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+....||-||..||-- +-...|.++...+|..+.....+-. .+..+.|.|-+..|++-.
T Consensus 108 SVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~illAG~------ 167 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAHILLAGS------ 167 (399)
T ss_pred ceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC----ceEEEEecccccEEEeec------
Confidence 57889999999876642 2235667777777765544321111 145778889776655521
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeecCCC--CceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~~~--~~~~~~~~SpDg~~ 188 (616)
....+|.+.+ ++...++-.+ ...+.-.|+||||+
T Consensus 168 -------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr 204 (399)
T KOG0296|consen 168 -------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR 204 (399)
T ss_pred -------------------------------------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCce
Confidence 1235677766 3333333332 23456689999999
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
|+....+ ..|.+||..++
T Consensus 205 ~~tgy~d-------------gti~~Wn~ktg 222 (399)
T KOG0296|consen 205 ILTGYDD-------------GTIIVWNPKTG 222 (399)
T ss_pred EEEEecC-------------ceEEEEecCCC
Confidence 9877543 25778887755
No 153
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.31 E-value=1.7 Score=50.03 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=30.0
Q ss_pred eEEEEeC-CCC-eeecC-CCCceeeeeECC-CCcEEEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 158 QLVLGSL-DGT-AKDFG-TPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 158 ~l~~~d~-~g~-~~~l~-~~~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
.|.++|+ +++ ...+. ....+..++|+| |+..|+..+.+ ..+.+||+..+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-------------g~v~iWd~~~~ 608 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD-------------GSVKLWSINQG 608 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-------------CEEEEEECCCC
Confidence 4556676 443 33332 334567899997 67766655432 36889998754
No 154
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.26 E-value=0.021 Score=63.26 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=44.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....||||+..++-.+. .+.|.+|+..+.+...++...... +.+..|.|=|++++..
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~----------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASq 189 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSL----------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQ 189 (942)
T ss_pred ccceeccCCCccEEEEecc----------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeee
Confidence 4889999999998888764 367788888887654444333322 6789999999988775
No 155
>COG4099 Predicted peptidase [General function prediction only]
Probab=96.19 E-value=0.035 Score=53.05 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCC----------eEEE
Q 007140 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR----------FAVL 559 (616)
Q Consensus 490 ~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~G----------y~Vl 559 (616)
.-|.+|.-.||.|.+++|+||| .|++++.|+ +||. | ... ..+++...| +.||
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky-~PLvlfLHg--------agq~-g-~dn-------~~~l~sg~gaiawa~pedqcfVl 230 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKY-YPLVLFLHG--------AGQG-G-SDN-------DKVLSSGIGAIAWAGPEDQCFVL 230 (387)
T ss_pred ccCceeeEEEecccccCCCCcc-ccEEEEEec--------CCCC-C-chh-------hhhhhcCccceeeecccCceEEE
Confidence 3578999999999999999997 466666632 2222 1 111 112233333 5566
Q ss_pred E-CCCCCccccCCCccC-ChhHHHHHHHHHHHHH-HHHHcCCccCCceEEEee
Q 007140 560 A-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVE-EVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 560 ~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~-~l~~~~~vD~~ri~~~~~ 609 (616)
. .|. .=|.. .+--.....-.++.++ -|.++.-||..||.||+-
T Consensus 231 APQy~-------~if~d~e~~t~~~l~~~idli~~vlas~ynID~sRIYviGl 276 (387)
T COG4099 231 APQYN-------PIFADSEEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGL 276 (387)
T ss_pred ccccc-------ccccccccccchhHHHHHHHHHHHHhhccCcccceEEEEee
Confidence 5 332 22222 1111234556667777 566778899999999974
No 156
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=1.3 Score=42.04 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=36.1
Q ss_pred cccceEEccC-CCeEEEEEeeccccccCCCceeEEEEECCCCc---eEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGE---AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPD-G~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~---~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
++-..+|+|- |..||-.. . ...|.+++..++. .+.++.... ...+...+|||.|+.|+..
T Consensus 16 r~W~~awhp~~g~ilAscg-~---------Dk~vriw~~~~~~s~~ck~vld~~h---krsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG-T---------DKAVRIWSTSSGDSWTCKTVLDDGH---KRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred cEEEEEeccCCceEEEeec-C---------CceEEEEecCCCCcEEEEEeccccc---hheeeeeeecCCCcEEEEe
Confidence 4678899998 77444332 2 3456666766432 333332211 1226789999999988774
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=0.26 Score=52.24 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=75.6
Q ss_pred CCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC-ceEecccCCCccccccccceEEecCCcEEEEEec
Q 007140 28 PDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (616)
Q Consensus 28 ~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g-~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (616)
.....++..+.||||++||+..- ....||.+..... +.+.+-..+. .......+.++-|+..+++...
T Consensus 380 k~~~nIs~~aiSPdg~~Ia~st~---------~~~~iy~L~~~~~vk~~~v~~~~~--~~~~a~~i~ftid~~k~~~~s~ 448 (691)
T KOG2048|consen 380 KEKENISCAAISPDGNLIAISTV---------SRTKIYRLQPDPNVKVINVDDVPL--ALLDASAISFTIDKNKLFLVSK 448 (691)
T ss_pred CCccceeeeccCCCCCEEEEeec---------cceEEEEeccCcceeEEEeccchh--hhccceeeEEEecCceEEEEec
Confidence 33335788899999999999763 2467887776552 1222211111 0111346677877777666521
Q ss_pred CCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC----CeeecC---CCCceee
Q 007140 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG----TAKDFG---TPAVYTA 179 (616)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g----~~~~l~---~~~~~~~ 179 (616)
. ...|..+++++ +...+. ..+.++.
T Consensus 449 ~------------------------------------------------~~~le~~el~~ps~kel~~~~~~~~~~~I~~ 480 (691)
T KOG2048|consen 449 N------------------------------------------------IFSLEEFELETPSFKELKSIQSQAKCPSISR 480 (691)
T ss_pred c------------------------------------------------cceeEEEEecCcchhhhhccccccCCCccee
Confidence 1 11233333311 111121 1235678
Q ss_pred eeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEec
Q 007140 180 VEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (616)
Q Consensus 180 ~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (616)
+..||||++|++.... ..|+++++++++-+.+.
T Consensus 481 l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 481 LVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred EEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 8999999999998742 47999999998877765
No 158
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=96.02 E-value=0.073 Score=51.92 Aligned_cols=102 Identities=17% Similarity=0.116 Sum_probs=59.0
Q ss_pred EEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CC
Q 007140 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GP 562 (616)
Q Consensus 484 ~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~ 562 (616)
.+.+++..|. +.++++.|.+-. |.|+||+.+|- ++. .+.+..........|+.+||.|+. |+
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~~-----~~~~VlllHG~-------g~~----~~~~~~~~~~la~~La~~Gy~Vl~~Dl 64 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAVG-----PRGVVIYLPPF-------AEE----MNKSRRMVALQARAFAAGGFGVLQIDL 64 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCCC-----CceEEEEECCC-------ccc----ccchhHHHHHHHHHHHHCCCEEEEECC
Confidence 4566666665 668888887532 23778887331 000 011100000235678999999999 99
Q ss_pred CCCccccCCC-ccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 563 SIPIIGEGDK-LPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 563 R~GS~GyG~~-f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
| |. |.... +....|. ...+|+.+++++|.+++ .++|.+-+
T Consensus 65 ~-G~-G~S~g~~~~~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG 105 (266)
T TIGR03101 65 Y-GC-GDSAGDFAAARWD-VWKEDVAAAYRWLIEQG---HPPVTLWG 105 (266)
T ss_pred C-CC-CCCCCccccCCHH-HHHHHHHHHHHHHHhcC---CCCEEEEE
Confidence 9 72 32211 1122332 35699999999998765 35665544
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.01 E-value=0.6 Score=45.06 Aligned_cols=58 Identities=22% Similarity=0.218 Sum_probs=40.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC-CceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.....+||+-|.+||.=.. + ..|.+||..+ +-.+.++.+-. . +.++.||+||+.|+..
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~--------n--G~vvI~D~~T~~iar~lsaH~~-p----i~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCA--------N--GRVVIYDFDTFRIARMLSAHVR-P----ITSLCWSRDGRKLLTS 83 (405)
T ss_pred ccceEEeccCcceeeeecc--------C--CcEEEEEccccchhhhhhcccc-c----eeEEEecCCCCEeeee
Confidence 3567899999999988553 2 4566667766 33445543322 2 6789999999988775
No 160
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.96 E-value=4.5 Score=46.99 Aligned_cols=118 Identities=12% Similarity=0.125 Sum_probs=58.0
Q ss_pred cceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEecc-ccccccceeecCCCceEEEeeeccCccE
Q 007140 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQT 324 (616)
Q Consensus 246 ~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~ 324 (616)
.++|+.||+. +-+...+... ..+..+-+++. + |+.....+ .++-...++|.|.|..++.... .....
T Consensus 214 ~ISWRGDG~y--FAVss~~~~~-----~~~R~iRVy~R---e-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~ 281 (928)
T PF04762_consen 214 RISWRGDGEY--FAVSSVEPET-----GSRRVIRVYSR---E-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRH 281 (928)
T ss_pred EEEECCCCcE--EEEEEEEcCC-----CceeEEEEECC---C-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCc
Confidence 5889999983 2222221111 01223444454 3 23222221 1233456899999997776553 23445
Q ss_pred EEEEEeCCCCCCCceEE-eecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEe
Q 007140 325 RTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNG 385 (616)
Q Consensus 325 ~l~~~d~~~~~~~~~~l-~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~ 385 (616)
.+..+.-.|- ..... ......+ .....+.|+.|+..|++... ...+||..+
T Consensus 282 ~VvFfErNGL--rhgeF~l~~~~~~----~~v~~l~Wn~ds~iLAv~~~----~~vqLWt~~ 333 (928)
T PF04762_consen 282 DVVFFERNGL--RHGEFTLRFDPEE----EKVIELAWNSDSEILAVWLE----DRVQLWTRS 333 (928)
T ss_pred EEEEEecCCc--EeeeEecCCCCCC----ceeeEEEECCCCCEEEEEec----CCceEEEee
Confidence 6666665541 11111 1100000 00013899999998888663 235566443
No 161
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.90 E-value=0.15 Score=51.72 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=69.3
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC-CceEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~-g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (616)
.++.+.|.|---+|...... ...|++|++-. +...+.+.... ..+....|+++|..++...-
T Consensus 216 gvsai~~fp~~~hLlLS~gm---------D~~vklW~vy~~~~~lrtf~gH~----k~Vrd~~~s~~g~~fLS~sf---- 278 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGM---------DGLVKLWNVYDDRRCLRTFKGHR----KPVRDASFNNCGTSFLSASF---- 278 (503)
T ss_pred ccchhhhccceeeEEEecCC---------CceEEEEEEecCcceehhhhcch----hhhhhhhccccCCeeeeeec----
Confidence 48899999954444443322 35677777754 44333322211 12678999999998766411
Q ss_pred CCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecCCCCceeeeeECCCCcE
Q 007140 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKY 188 (616)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~ 188 (616)
| ..|-.+|+ +|+ ...+.......-+.+.||+..
T Consensus 279 ------------------------------------D---------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 279 ------------------------------------D---------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ------------------------------------c---------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 1 23445666 664 334544444456899999977
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCce
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (616)
++++... ...|..||+..++
T Consensus 314 ~fl~G~s------------d~ki~~wDiRs~k 333 (503)
T KOG0282|consen 314 IFLVGGS------------DKKIRQWDIRSGK 333 (503)
T ss_pred EEEEecC------------CCcEEEEeccchH
Confidence 7666433 2378889987655
No 162
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=95.81 E-value=0.024 Score=43.85 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=34.4
Q ss_pred CcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCC
Q 007140 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIP 565 (616)
Q Consensus 492 G~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~G 565 (616)
|.+|....+.|++- + | .+|+.+++.. .|. ..| . ...+.|+++||+|+. |.| |
T Consensus 1 G~~L~~~~w~p~~~-~-k----~~v~i~HG~~---------eh~--~ry---~-~~a~~L~~~G~~V~~~D~r-G 53 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-P-K----AVVVIVHGFG---------EHS--GRY---A-HLAEFLAEQGYAVFAYDHR-G 53 (79)
T ss_pred CcEEEEEEecCCCC-C-C----EEEEEeCCcH---------HHH--HHH---H-HHHHHHHhCCCEEEEECCC-c
Confidence 67888899988775 2 2 5565552210 011 122 1 557899999999999 999 7
No 163
>PLN02872 triacylglycerol lipase
Probab=95.75 E-value=0.096 Score=54.36 Aligned_cols=112 Identities=11% Similarity=-0.046 Sum_probs=63.2
Q ss_pred CCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC--chHHHHhhCCe
Q 007140 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP--TSSLIFLARRF 556 (616)
Q Consensus 479 ~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~la~~Gy 556 (616)
..+.|...+++.||..|.-.-+.+.+-..++. +.|.|+..|+.. .+...|....+ .....||++||
T Consensus 41 gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~-~~~~Vll~HGl~-----------~ss~~w~~~~~~~sla~~La~~Gy 108 (395)
T PLN02872 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQ-RGPPVLLQHGLF-----------MAGDAWFLNSPEQSLGFILADHGF 108 (395)
T ss_pred CCCceEEEEECCCCcEEEEEEcCCCCCCCCCC-CCCeEEEeCccc-----------ccccceeecCcccchHHHHHhCCC
Confidence 35889999999999877654443322111111 125566663210 11123321111 12336899999
Q ss_pred EEEE-CCCCCccccCCCcc----------CChhHHHHHHHHHHHHHHHHHcCCccCCceEEE
Q 007140 557 AVLA-GPSIPIIGEGDKLP----------NDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNT 607 (616)
Q Consensus 557 ~Vl~-n~R~GS~GyG~~f~----------~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~ 607 (616)
.|+. |.| |. +|+.... +-.|-.....|+.+.++++.+.. .+++.+-
T Consensus 109 dV~l~n~R-G~-~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~V 165 (395)
T PLN02872 109 DVWVGNVR-GT-RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIV 165 (395)
T ss_pred Cccccccc-cc-ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEE
Confidence 9999 999 95 3332211 12344556689999999998753 2455543
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.66 E-value=1.2 Score=43.24 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=24.0
Q ss_pred eccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
|....+.+....|.+||..|...++.+ . .|...|+.-
T Consensus 246 lggh~gGvThL~~~edGn~lfsGaRk~-d--kIl~WDiR~ 282 (406)
T KOG2919|consen 246 LGGHGGGVTHLQWCEDGNKLFSGARKD-D--KILCWDIRY 282 (406)
T ss_pred ecccCCCeeeEEeccCcCeecccccCC-C--eEEEEeehh
Confidence 445566788899999998765544322 2 466666654
No 165
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=95.58 E-value=0.15 Score=46.60 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=75.8
Q ss_pred CCCcccCCceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCch-HHHH
Q 007140 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS-SLIF 551 (616)
Q Consensus 473 ~~~~~~~~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~q~l 551 (616)
+.+....++-|.++.+++|-.++++|+++-+. ..|+++|.++- +|. -++ +.+. .-++
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~N-------AGN-----mGh---r~~i~~~fy 102 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHAN-------AGN-----MGH---RLPIARVFY 102 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccC-------CCc-----ccc---hhhHHHHHH
Confidence 33444556888999999999999999998322 23999999541 111 122 1122 2368
Q ss_pred hhCCeEEEE-CCCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 552 LARRFAVLA-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 552 a~~Gy~Vl~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
.+.+--||. .|| |||..--. ..- .-.-|-.++++||..++..|..+|.+-+
T Consensus 103 ~~l~mnv~ivsYR----GYG~S~GspsE~--GL~lDs~avldyl~t~~~~dktkivlfG 155 (300)
T KOG4391|consen 103 VNLKMNVLIVSYR----GYGKSEGSPSEE--GLKLDSEAVLDYLMTRPDLDKTKIVLFG 155 (300)
T ss_pred HHcCceEEEEEee----ccccCCCCcccc--ceeccHHHHHHHHhcCccCCcceEEEEe
Confidence 889999999 999 58775322 111 2357888999999999999999998764
No 166
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.52 E-value=0.67 Score=43.74 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=41.9
Q ss_pred CCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC-------Cce-EecccCCCccccccccceEEecCC
Q 007140 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-------GEA-KPLFESPDICLNAVFGSFVWVNNS 98 (616)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~-------g~~-~~lt~~~~~~~~~~~~~~~wspdg 98 (616)
...+..+....||++|+.++++...-. .....|.++++.. .++ ..|..... . .....|+|-+
T Consensus 90 ~k~~~~Vk~~~F~~~gn~~l~~tD~~m-----g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-k----it~a~Wg~l~ 159 (327)
T KOG0643|consen 90 WKTNSPVKRVDFSFGGNLILASTDKQM-----GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-K----ITSALWGPLG 159 (327)
T ss_pred eecCCeeEEEeeccCCcEEEEEehhhc-----CcceEEEEEEccCChhhhcccCceEEecCCcc-c----eeeeeecccC
Confidence 344445778899999999999875421 2345678888873 332 22221111 1 4467899988
Q ss_pred cEEEE
Q 007140 99 TLLIF 103 (616)
Q Consensus 99 ~~l~~ 103 (616)
+.|+.
T Consensus 160 ~~ii~ 164 (327)
T KOG0643|consen 160 ETIIA 164 (327)
T ss_pred CEEEE
Confidence 88766
No 167
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.48 E-value=0.52 Score=48.43 Aligned_cols=126 Identities=13% Similarity=0.199 Sum_probs=79.2
Q ss_pred ccceEEccCCCeEEEEEeecc-ccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 33 INFVSWSPDGKRIAFSVRVDE-EDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~-~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.-.+.|.+.|+.|.++..+.. -.+..-+..+||++++..- ..++-..-.+. +-.+.|.|+++.++...
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~p----Vhdf~W~p~S~~F~vi~------ 293 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDP----VHDFTWEPLSSRFAVIS------ 293 (561)
T ss_pred ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceecccccc----ceeeeecccCCceeEEe------
Confidence 457899999999999987732 1111234588999998743 23332111112 66899999999877652
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCCCeeecCCCCceeeeeECCCCcEEEE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVLI 191 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g~~~~l~~~~~~~~~~~SpDg~~i~~ 191 (616)
| + ....+-++|+.|+++-...+..-..+.|||.+++|++
T Consensus 294 ------------------g-------~----------------~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 294 ------------------G-------Y----------------MPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred ------------------c-------c----------------cccceeecccccceEEecCCcccccccccCcccEEEE
Confidence 1 0 0123445566666555444433356889999999999
Q ss_pred EeccCCCcccccCcccCccEEEEeCCCce
Q 007140 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (616)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (616)
....+- ...+.+++..+.-
T Consensus 333 agF~nl----------~gni~i~~~~~rf 351 (561)
T COG5354 333 AGFDNL----------QGNIEIFDPAGRF 351 (561)
T ss_pred ecCCcc----------ccceEEeccCCce
Confidence 865432 3467788877653
No 168
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.46 E-value=1.3 Score=48.32 Aligned_cols=64 Identities=23% Similarity=0.413 Sum_probs=40.1
Q ss_pred eeecCCCCceeeeeECCCC-cEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCc
Q 007140 168 AKDFGTPAVYTAVEPSPDQ-KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS 246 (616)
Q Consensus 168 ~~~l~~~~~~~~~~~SpDg-~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 246 (616)
.....+.++++-++|.|-. ++++-.+. ..++.+|++...++-.-+++. .-...
T Consensus 403 L~~F~HndfVTcVaFnPvDDryFiSGSL-------------D~KvRiWsI~d~~Vv~W~Dl~-------------~lITA 456 (712)
T KOG0283|consen 403 LKVFSHNDFVTCVAFNPVDDRYFISGSL-------------DGKVRLWSISDKKVVDWNDLR-------------DLITA 456 (712)
T ss_pred eeEEecCCeeEEEEecccCCCcEeeccc-------------ccceEEeecCcCeeEeehhhh-------------hhhee
Confidence 4455567788999999954 55444433 236888888777654433321 00235
Q ss_pred ceeecCCCceE
Q 007140 247 ISWRADKPSTL 257 (616)
Q Consensus 247 ~~wspdg~~~l 257 (616)
+.++|||++.|
T Consensus 457 vcy~PdGk~av 467 (712)
T KOG0283|consen 457 VCYSPDGKGAV 467 (712)
T ss_pred EEeccCCceEE
Confidence 78999998643
No 169
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.43 E-value=0.04 Score=35.88 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=23.9
Q ss_pred EeccccccccceeecCCCceEEEeeecc-CccEEEEE
Q 007140 293 ILHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (616)
Q Consensus 293 ~l~~~~~~~~~~~wspDg~~l~~~~~~~-~~~~~l~~ 328 (616)
+++........+.|||||+.|++.+... .+..+||+
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4455555667899999999988877543 25567774
No 170
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.34 E-value=2.9 Score=40.34 Aligned_cols=135 Identities=12% Similarity=0.044 Sum_probs=67.8
Q ss_pred ceEEEEeC-CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCC
Q 007140 157 AQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (616)
Q Consensus 157 ~~l~~~d~-~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (616)
.++-++|+ ..++.++.... ....+.|..++..+...-.+ .+|-+||+......-+..-
T Consensus 155 ~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId-------------n~ikvWd~r~~d~~~~lsG------- 214 (338)
T KOG0265|consen 155 GTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID-------------NDIKVWDLRKNDGLYTLSG------- 214 (338)
T ss_pred ceEEEEeecccchhhccccceeEEEEEecccccceeecccc-------------CceeeeccccCcceEEeec-------
Confidence 45666676 33333333222 45688898888877655432 3567777743332222110
Q ss_pred ccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCc-eEeccc-----cccccceeecC
Q 007140 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHKL-----DLRFRSVSWCD 308 (616)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~~-----~~~~~~~~wsp 308 (616)
...-...+..|++|...+- ......+-+|+..||..++. ..+... .-..-.-+|||
T Consensus 215 -----h~DtIt~lsls~~gs~lls-------------nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 215 -----HADTITGLSLSRYGSFLLS-------------NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred -----ccCceeeEEeccCCCcccc-------------ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 0000124566777763110 12334566667667776554 223321 11233468999
Q ss_pred CCceEEEeeeccCccEEEEEEeCCC
Q 007140 309 DSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 309 Dg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
++..+.+.+.. + .+|+.|..+
T Consensus 277 ~~~~i~ags~d--r--~vyvwd~~~ 297 (338)
T KOG0265|consen 277 NGTKITAGSAD--R--FVYVWDTTS 297 (338)
T ss_pred CCCcccccccc--c--eEEEeeccc
Confidence 98765443311 1 567776654
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.27 E-value=0.24 Score=49.50 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=37.1
Q ss_pred CCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCccccccccceEEecCC
Q 007140 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNS 98 (616)
Q Consensus 30 ~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspdg 98 (616)
...+..+.|||||+.|+++.. ....||++++|.. ...|..+. +..+..+.|+.|+
T Consensus 186 ~~eV~DL~FS~dgk~lasig~-----------d~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGA-----------DSARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDN 241 (398)
T ss_pred cCccccceeCCCCcEEEEecC-----------CceEEEEeccCchhhhcCCccc---chhhhhceecccC
Confidence 336889999999999999963 2666778888843 33332211 2236688898776
No 172
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.25 E-value=5.6 Score=43.12 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=38.4
Q ss_pred ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 35 ~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
..+||++|++|+-.. ++.|-..|++++... +...+... ......+.-+||++.|+..
T Consensus 24 ~~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTA 80 (775)
T ss_pred ceeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEe
Confidence 489999999877664 256778899988753 32222111 2235578889998887775
No 173
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=95.21 E-value=0.2 Score=51.50 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred eEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC-chHHHHhhCCeEEEE-
Q 007140 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLA- 560 (616)
Q Consensus 483 e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~q~la~~Gy~Vl~- 560 (616)
+...+...||.+|.+....|.+-+ +.|+||+.|+- ++...+ .+ ...+.|+++||.|+.
T Consensus 62 ~~~~~~~~~g~~l~~~~~~p~~~~-----~~~~iv~lHG~------------~~~~~~---~~~~~~~~l~~~g~~v~~~ 121 (349)
T PLN02385 62 EESYEVNSRGVEIFSKSWLPENSR-----PKAAVCFCHGY------------GDTCTF---FFEGIARKIASSGYGVFAM 121 (349)
T ss_pred eeeeEEcCCCCEEEEEEEecCCCC-----CCeEEEEECCC------------CCccch---HHHHHHHHHHhCCCEEEEe
Confidence 334455679999999999986432 23778877320 000111 11 235678899999999
Q ss_pred CCCCCccccCCCccC----ChhHHHHHHHHHHHHHHHHHcCCccCCceEE
Q 007140 561 GPSIPIIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRRGVGLPILYLN 606 (616)
Q Consensus 561 n~R~GS~GyG~~f~~----~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~ 606 (616)
|+| | +|..-.. ..+ ....+|+.+.++++..+.-.++.++.+
T Consensus 122 D~~-G---~G~S~~~~~~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~L 166 (349)
T PLN02385 122 DYP-G---FGLSEGLHGYIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFL 166 (349)
T ss_pred cCC-C---CCCCCCCCCCcCCH-HHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 999 7 4432111 122 234678888888776554344445544
No 174
>PRK10985 putative hydrolase; Provisional
Probab=95.20 E-value=0.11 Score=52.70 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=33.0
Q ss_pred hHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 547 SSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
..+.|+++||.|+. |+| |..|....... .+.....+|+..+++++.++
T Consensus 79 ~~~~l~~~G~~v~~~d~r-G~g~~~~~~~~-~~~~~~~~D~~~~i~~l~~~ 127 (324)
T PRK10985 79 LLEAAQKRGWLGVVMHFR-GCSGEPNRLHR-IYHSGETEDARFFLRWLQRE 127 (324)
T ss_pred HHHHHHHCCCEEEEEeCC-CCCCCccCCcc-eECCCchHHHHHHHHHHHHh
Confidence 45789999999999 999 86443222222 11112478999999999875
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.10 E-value=0.16 Score=53.23 Aligned_cols=113 Identities=14% Similarity=0.235 Sum_probs=64.9
Q ss_pred CCCCCcccceEEcc-CCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007140 27 YPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 27 ~~~~~~~~~~~~SP-DG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (616)
+.++..+....|.| |.++||.... ++.-+||.+...++.....| ++.. + .-.++.|.+++
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~t--Pe~~----l-----t~h~eKI~slR 684 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEMT--PEKI----L-----TIHGEKITSLR 684 (1012)
T ss_pred cccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccCC--ccee----e-----ecccceEEEEE
Confidence 34555678899999 8899988653 67789999887766543333 2211 1 12355555543
Q ss_pred cCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC--eeecCCCCceeeeeE
Q 007140 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTAVEP 182 (616)
Q Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~--~~~l~~~~~~~~~~~ 182 (616)
-..-.+ +.+. .+. ....|-++|+ +++ .+.....+.+.+++|
T Consensus 685 fHPLAa----------------------------dvLa-------~as-yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 685 FHPLAA----------------------------DVLA-------VAS-YDSTIELWDLANAKLYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred ecchhh----------------------------hHhh-------hhh-ccceeeeeehhhhhhhheeccCcCceeEEEE
Confidence 211000 0000 000 1245666777 553 233344556779999
Q ss_pred CCCCcEEEEEec
Q 007140 183 SPDQKYVLITSM 194 (616)
Q Consensus 183 SpDg~~i~~~~~ 194 (616)
||||++++-+..
T Consensus 729 SpdGr~~AtVcK 740 (1012)
T KOG1445|consen 729 SPDGRRIATVCK 740 (1012)
T ss_pred CCCCcceeeeec
Confidence 999999987743
No 176
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.09 E-value=0.14 Score=55.07 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=72.8
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (616)
+.-..|.|++.++|-=+. +. -+-+||+.+|..++++....+. +..+.+||+|+.|+....
T Consensus 538 V~cv~FHPNs~Y~aTGSs--------D~--tVRlWDv~~G~~VRiF~GH~~~----V~al~~Sp~Gr~LaSg~e------ 597 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSS--------DR--TVRLWDVSTGNSVRIFTGHKGP----VTALAFSPCGRYLASGDE------ 597 (707)
T ss_pred cceEEECCcccccccCCC--------Cc--eEEEEEcCCCcEEEEecCCCCc----eEEEEEcCCCceEeeccc------
Confidence 556899999987664321 33 3445588888887776444333 678999999998876310
Q ss_pred CCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeec-CCCCceeeeeECCCCcEE
Q 007140 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDF-GTPAVYTAVEPSPDQKYV 189 (616)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l-~~~~~~~~~~~SpDg~~i 189 (616)
...|.++|+ +|+ +.++ .+.+.+.+++||.||..|
T Consensus 598 -------------------------------------------d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 598 -------------------------------------------DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred -------------------------------------------CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEE
Confidence 134667777 554 3333 333456789999999988
Q ss_pred EEEeccCCCcccccCcccCccEEEEeCC
Q 007140 190 LITSMHRPYSYKVPCARFSQKVQVWTTD 217 (616)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (616)
+....+ ..+.+||+.
T Consensus 635 asgg~D-------------nsV~lWD~~ 649 (707)
T KOG0263|consen 635 ASGGAD-------------NSVRLWDLT 649 (707)
T ss_pred EecCCC-------------CeEEEEEch
Confidence 877543 357777765
No 177
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.04 E-value=3.1 Score=41.57 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=64.0
Q ss_pred eeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCc-ceeecCCCce
Q 007140 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRS-ISWRADKPST 256 (616)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~wspdg~~~ 256 (616)
....++.++.+++|.+.+ ..++-.|+.+...+.....++..+.. .....++|.+. +++.+... +
T Consensus 187 ~~~~~~~~~~~~~F~Sy~-------------G~v~~~dlsg~~~~~~~~~~~~t~~e-~~~~WrPGG~Q~~A~~~~~~-r 251 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYE-------------GNVYSADLSGDSAKFGKPWSLLTDAE-KADGWRPGGWQLIAYHAASG-R 251 (342)
T ss_dssp S--EEETTTTEEEEEBTT-------------SEEEEEEETTSSEEEEEEEESS-HHH-HHTTEEE-SSS-EEEETTTT-E
T ss_pred cccceECCCCeEEEEecC-------------CEEEEEeccCCcccccCcccccCccc-cccCcCCcceeeeeeccccC-e
Confidence 355667777777777643 36888888877665543322211000 00112334433 45544433 3
Q ss_pred EEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEE-eeeccCccEEEEEEeCCCC
Q 007140 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN-ETWYKTSQTRTWLVCPGSK 334 (616)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~-~~~~~~~~~~l~~~d~~~~ 334 (616)
||.+-. .+..+.. -....+++++|. +.++............++..|.|.+-+++ ... +...|+++|+.++
T Consensus 252 lyvLMh-~g~~gsH-KdpgteVWv~D~---~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~---~~~~l~v~D~~tG 322 (342)
T PF06433_consen 252 LYVLMH-QGGEGSH-KDPGTEVWVYDL---KTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA---GDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEE-E--TT-T-TS-EEEEEEEET---TTTEEEEEEEEEEEESEEEEESSSS-EEEEEET---TTTEEEEEETTT-
T ss_pred EEEEec-CCCCCCc-cCCceEEEEEEC---CCCeEEEEEeCCCccceEEEccCCCcEEEEEcC---CCCeEEEEeCcCC
Confidence 443322 2222221 123347888887 54333222222334456788888775433 332 1237999999884
No 178
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.92 E-value=1.4 Score=42.56 Aligned_cols=120 Identities=12% Similarity=0.248 Sum_probs=63.8
Q ss_pred cCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceee
Q 007140 171 FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (616)
Q Consensus 171 l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (616)
+.+-..+..++|.|.|.+|++.+.. | .+.+||+++-+.-.-+. | . +....+.-.+.+|
T Consensus 213 ~qd~~~vrsiSfHPsGefllvgTdH-p------------~~rlYdv~T~Qcfvsan-P------d--~qht~ai~~V~Ys 270 (430)
T KOG0640|consen 213 FQDTEPVRSISFHPSGEFLLVGTDH-P------------TLRLYDVNTYQCFVSAN-P------D--DQHTGAITQVRYS 270 (430)
T ss_pred hhccceeeeEeecCCCceEEEecCC-C------------ceeEEeccceeEeeecC-c------c--cccccceeEEEec
Confidence 3344467799999999999998643 3 46678887654332221 1 0 0011122357888
Q ss_pred cCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCc-eEecc--ccccccceeecCCCceEEEeeeccCccEEEE
Q 007140 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKP-EILHK--LDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (616)
Q Consensus 251 pdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~ 327 (616)
+.|+ ||.....| +.+-+||- -.+.- +.+.+ ....+....|+.||++++... .+....||
T Consensus 271 ~t~~--lYvTaSkD-----------G~IklwDG---VS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG--~DS~vkLW 332 (430)
T KOG0640|consen 271 STGS--LYVTASKD-----------GAIKLWDG---VSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG--KDSTVKLW 332 (430)
T ss_pred CCcc--EEEEeccC-----------CcEEeecc---ccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC--Ccceeeee
Confidence 8887 55442222 23333332 11111 11211 123456788999999876642 22334666
Q ss_pred EEe
Q 007140 328 LVC 330 (616)
Q Consensus 328 ~~d 330 (616)
.+.
T Consensus 333 Ei~ 335 (430)
T KOG0640|consen 333 EIS 335 (430)
T ss_pred eec
Confidence 654
No 179
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=94.84 E-value=0.022 Score=58.32 Aligned_cols=58 Identities=24% Similarity=0.242 Sum_probs=40.9
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
.+....|||||++||.++. + .-|-+++..+.+..-+...--+ .+-...|||||++|+.
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------D--GfLRvF~fdt~eLlg~mkSYFG----GLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------D--GFLRIFDFDTQELLGVMKSYFG----GLLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEec--------C--ceEEEeeccHHHHHHHHHhhcc----ceEEEEEcCCccEEEe
Confidence 5788999999999999985 3 4556667777665554322111 1447799999998876
No 180
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.83 E-value=2.5 Score=41.80 Aligned_cols=116 Identities=17% Similarity=0.223 Sum_probs=74.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEEecCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~ 110 (616)
.+...+.+|+.+ ++.+.. +..--|+|+..+|+ +-.+|.+++ . +....||.||.+|+.-
T Consensus 66 svFavsl~P~~~-l~aTGG---------gDD~AflW~~~~ge~~~eltgHKD-S----Vt~~~FshdgtlLATG------ 124 (399)
T KOG0296|consen 66 SVFAVSLHPNNN-LVATGG---------GDDLAFLWDISTGEFAGELTGHKD-S----VTCCSFSHDGTLLATG------ 124 (399)
T ss_pred ceEEEEeCCCCc-eEEecC---------CCceEEEEEccCCcceeEecCCCC-c----eEEEEEccCceEEEec------
Confidence 467888899554 444432 23456777887776 567776654 2 6789999999987662
Q ss_pred CCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CC-CeeecC-CCCceeeeeECCCCc
Q 007140 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFG-TPAVYTAVEPSPDQK 187 (616)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g-~~~~l~-~~~~~~~~~~SpDg~ 187 (616)
+ ....+.++.. +| ....|. ....+..+.|.|-+.
T Consensus 125 -----------------------------d--------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~ 161 (399)
T KOG0296|consen 125 -----------------------------D--------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH 161 (399)
T ss_pred -----------------------------C--------------CCccEEEEEcccCceEEEeecccCceEEEEeccccc
Confidence 0 1234556666 44 333343 233456899999887
Q ss_pred EEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEe
Q 007140 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVREL 224 (616)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l 224 (616)
.+++.+.. ..+|.|.+..+ ..+.+
T Consensus 162 illAG~~D-------------GsvWmw~ip~~~~~kv~ 186 (399)
T KOG0296|consen 162 ILLAGSTD-------------GSVWMWQIPSQALCKVM 186 (399)
T ss_pred EEEeecCC-------------CcEEEEECCCcceeeEe
Confidence 77777543 36999999874 44443
No 181
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=94.78 E-value=0.1 Score=46.92 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=34.9
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
...|..+||++|. ||| |-.+-.-+|-. |-.+.+|..++++||.++
T Consensus 53 a~~l~~~G~atlRfNfR-gVG~S~G~fD~---GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 53 ARALVKRGFATLRFNFR-GVGRSQGEFDN---GIGELEDAAAALDWLQAR 98 (210)
T ss_pred HHHHHhCCceEEeeccc-ccccccCcccC---CcchHHHHHHHHHHHHhh
Confidence 4579999999999 999 74333333332 556899999999999887
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=94.75 E-value=0.33 Score=50.10 Aligned_cols=57 Identities=21% Similarity=0.525 Sum_probs=35.4
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceE-ecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+...+|||||.-|.-... ++.-.|| .- +|-.| .+.+..+ . +-..+|.|++..++|.
T Consensus 106 A~~~gRW~~dGtgLlt~GE--------DG~iKiW--Sr-sGMLRStl~Q~~~-~----v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGE--------DGVIKIW--SR-SGMLRSTVVQNEE-S----IRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhcccCCCCceeeeecC--------CceEEEE--ec-cchHHHHHhhcCc-e----eEEEEECCCCCceEEe
Confidence 3667899999987655431 4445555 53 44333 2222222 1 4578999999999886
No 183
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=94.73 E-value=0.065 Score=50.45 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=37.8
Q ss_pred HHHHhh-CCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc---CCccCCceEEEee
Q 007140 548 SLIFLA-RRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR---GVGLPILYLNTTA 609 (616)
Q Consensus 548 ~q~la~-~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~---~~vD~~ri~~~~~ 609 (616)
...+|+ +||+|+. |||. +.- ..| ...++|+.++++|+++. --+|++||+|.+.
T Consensus 21 ~~~la~~~g~~v~~~~Yrl-~p~--~~~------p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~ 78 (211)
T PF07859_consen 21 AARLAAERGFVVVSIDYRL-APE--APF------PAALEDVKAAYRWLLKNADKLGIDPERIVLIGD 78 (211)
T ss_dssp HHHHHHHHTSEEEEEE----TTT--SST------THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEE
T ss_pred HHHHHhhccEEEEEeeccc-ccc--ccc------cccccccccceeeeccccccccccccceEEeec
Confidence 445564 9999999 9993 322 122 26899999999999987 2489999999874
No 184
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=94.47 E-value=1.9 Score=50.07 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=43.5
Q ss_pred ceEEEEeCCCCeeecCCC--CceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCC
Q 007140 157 AQLVLGSLDGTAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (616)
Q Consensus 157 ~~l~~~d~~g~~~~l~~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (616)
..+-+++-+|+......+ +....++|-|.|..|+.+.. .+. ..+|..+..+|-+....+- +...
T Consensus 237 R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~---------~~~VvFfErNGLrhgeF~l-~~~~--- 302 (928)
T PF04762_consen 237 RVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPD---------RHDVVFFERNGLRHGEFTL-RFDP--- 302 (928)
T ss_pred eEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEE-cCC---------CcEEEEEecCCcEeeeEec-CCCC---
Confidence 345556666654443332 23357899999999988863 221 2355566666544333221 1000
Q ss_pred ccccCccCCCCcceeecCCCc
Q 007140 235 VCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~ 255 (616)
.......+.|++|+.-
T Consensus 303 -----~~~~v~~l~Wn~ds~i 318 (928)
T PF04762_consen 303 -----EEEKVIELAWNSDSEI 318 (928)
T ss_pred -----CCceeeEEEECCCCCE
Confidence 0111346899999873
No 185
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.47 E-value=1.6 Score=40.86 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=68.3
Q ss_pred EEeC-CC-CeeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCcccc
Q 007140 161 LGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYN 238 (616)
Q Consensus 161 ~~d~-~g-~~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~ 238 (616)
.+|. +| ++..|..+..+.++.+|+||+.|...- . +.+-.||.+.=..-+-.++ |-
T Consensus 169 LWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-g-------------ssV~Fwdaksf~~lKs~k~------P~--- 225 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-G-------------SSVKFWDAKSFGLLKSYKM------PC--- 225 (334)
T ss_pred EEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-C-------------ceeEEeccccccceeeccC------cc---
Confidence 3455 66 445555444567899999998776552 1 2344555543211111111 11
Q ss_pred CccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEec--cccccccceeecCCCceEEEe
Q 007140 239 SVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLALVNE 316 (616)
Q Consensus 239 ~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~--~~~~~~~~~~wspDg~~l~~~ 316 (616)
...+.+.+|+.. + |+. .+ ..-.+|.+|. .+|+..... ...+.+..+.|||||...+..
T Consensus 226 ----nV~SASL~P~k~--~-fVa--Gg--------ed~~~~kfDy---~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 226 ----NVESASLHPKKE--F-FVA--GG--------EDFKVYKFDY---NTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred ----ccccccccCCCc--e-EEe--cC--------cceEEEEEec---cCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 122455677753 3 331 11 1123444454 555555543 234566789999999854443
Q ss_pred eeccCccEEEEEEeCCC
Q 007140 317 TWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 317 ~~~~~~~~~l~~~d~~~ 333 (616)
+ +++..+||......
T Consensus 286 S--EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 286 S--EDGTIRLWQTTPGK 300 (334)
T ss_pred C--CCceEEEEEecCCC
Confidence 3 34677999987643
No 186
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=4.9 Score=38.67 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=49.4
Q ss_pred ceEEEEeCCC--CeeecCCCC---ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCC
Q 007140 157 AQLVLGSLDG--TAKDFGTPA---VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAE 231 (616)
Q Consensus 157 ~~l~~~d~~g--~~~~l~~~~---~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~ 231 (616)
.-.+++|.++ ++..+...+ ++.--.|||||++|+.+.++-.. ...-|-+||...+ .+.+.+++.
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~--------~rGViGvYd~r~~-fqrvgE~~t-- 159 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP--------NRGVIGVYDAREG-FQRVGEFST-- 159 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC--------CCceEEEEecccc-cceeccccc--
Confidence 4566788855 455454332 45556899999999888765321 1346778887632 233333221
Q ss_pred CCCccccCccCCCCcceeecCCCceEEEE
Q 007140 232 DIPVCYNSVREGMRSISWRADKPSTLYWV 260 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~ 260 (616)
..-|.-.+.|.+||+ +|+.+
T Consensus 160 --------~GiGpHev~lm~DGr-tlvva 179 (366)
T COG3490 160 --------HGIGPHEVTLMADGR-TLVVA 179 (366)
T ss_pred --------CCcCcceeEEecCCc-EEEEe
Confidence 112334689999998 35444
No 187
>PHA02857 monoglyceride lipase; Provisional
Probab=94.39 E-value=0.32 Score=47.86 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=52.4
Q ss_pred EECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCC
Q 007140 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIP 565 (616)
Q Consensus 487 ~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~G 565 (616)
|.+.||..|.+.++.|.+ .+ .|+|+..|+-. .....| . ...+.|+++||.|+. |.| |
T Consensus 5 ~~~~~g~~l~~~~~~~~~---~~---~~~v~llHG~~-----------~~~~~~---~-~~~~~l~~~g~~via~D~~-G 62 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT---YP---KALVFISHGAG-----------EHSGRY---E-ELAENISSLGILVFSHDHI-G 62 (276)
T ss_pred eecCCCCEEEEEeccCCC---CC---CEEEEEeCCCc-----------cccchH---H-HHHHHHHhCCCEEEEccCC-C
Confidence 456799999999999952 12 26776663210 001122 1 456789999999999 999 7
Q ss_pred ccccCCCccC----ChhHHHHHHHHHHHHHHHHHc
Q 007140 566 IIGEGDKLPN----DRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 566 S~GyG~~f~~----~~~g~~~~~D~~~~v~~l~~~ 596 (616)
+|..=.. ..|. ..++|+.+.++++.+.
T Consensus 63 ---~G~S~~~~~~~~~~~-~~~~d~~~~l~~~~~~ 93 (276)
T PHA02857 63 ---HGRSNGEKMMIDDFG-VYVRDVVQHVVTIKST 93 (276)
T ss_pred ---CCCCCCccCCcCCHH-HHHHHHHHHHHHHHhh
Confidence 3432111 2333 3468888888877653
No 188
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=94.26 E-value=2.8 Score=39.82 Aligned_cols=154 Identities=15% Similarity=0.195 Sum_probs=77.1
Q ss_pred eeeeeECCC-CcEEEEEeccCCCcccccCcccCccEEEEeCCC-ceEEEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 177 YTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 177 ~~~~~~SpD-g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
+-.++|+|- |. |+.+... .+.|.+++..+ ......+-+. ++.....|.++|||.|+
T Consensus 17 ~W~~awhp~~g~-ilAscg~------------Dk~vriw~~~~~~s~~ck~vld---------~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 17 VWSVAWHPGKGV-ILASCGT------------DKAVRIWSTSSGDSWTCKTVLD---------DGHKRSVRSVAWSPHGR 74 (312)
T ss_pred EEEEEeccCCce-EEEeecC------------CceEEEEecCCCCcEEEEEecc---------ccchheeeeeeecCCCc
Confidence 457899997 55 3333222 12566777763 2222221111 01123357899999998
Q ss_pred ceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceE---eccccccccceeecCCCceEEEeeeccCccEEEEEEeC
Q 007140 255 STLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCP 331 (616)
Q Consensus 255 ~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~ 331 (616)
. |+-..+ .....++.. .+++.+- |-..+..+..++||++|.+|+..++.+ .+|+...
T Consensus 75 ~-La~aSF------------D~t~~Iw~k---~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK----SVWiWe~ 134 (312)
T KOG0645|consen 75 Y-LASASF------------DATVVIWKK---EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK----SVWIWEI 134 (312)
T ss_pred E-EEEeec------------cceEEEeec---CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC----eEEEEEe
Confidence 3 433211 122222222 2233332 323445577899999999998876432 5666666
Q ss_pred CCCCCCceEE--eecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007140 332 GSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (616)
Q Consensus 332 ~~~~~~~~~l--~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~ 382 (616)
+.. .+-.++ +....++. ..+.|.|--. |+|...-++ ..++|
T Consensus 135 ded-dEfec~aVL~~HtqDV------K~V~WHPt~d-lL~S~SYDn--TIk~~ 177 (312)
T KOG0645|consen 135 DED-DEFECIAVLQEHTQDV------KHVIWHPTED-LLFSCSYDN--TIKVY 177 (312)
T ss_pred cCC-CcEEEEeeeccccccc------cEEEEcCCcc-eeEEeccCC--eEEEE
Confidence 543 233333 22222221 1278887544 444443332 44555
No 189
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=94.21 E-value=5.9 Score=38.61 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=14.9
Q ss_pred ceeeeeECCCCcEEEEEec
Q 007140 176 VYTAVEPSPDQKYVLITSM 194 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~ 194 (616)
.-+.+.|+||-+.+++.-.
T Consensus 134 hpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred CceEEEECCCcceEEEEEc
Confidence 3457899999998888754
No 190
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.12 E-value=0.91 Score=46.51 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=85.5
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (616)
+|-||.++. .-+...++ .+.+..+.-+++||..+++.-++. ...-+.+||+.+..+. ....+.-
T Consensus 144 diiih~~~t---~~~tt~f~-~~sgqsvRll~ys~skr~lL~~as---------d~G~VtlwDv~g~sp~--~~~~~~H- 207 (673)
T KOG4378|consen 144 DIIIHGTKT---KQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIAS---------DKGAVTLWDVQGMSPI--FHASEAH- 207 (673)
T ss_pred cEEEEeccc---Ccccccee-cCCCCeEEEeecccccceeeEeec---------cCCeEEEEeccCCCcc--cchhhhc-
Confidence 577777764 22445555 454545668899999999888764 2356677798765432 2111100
Q ss_pred cccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCC
Q 007140 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (616)
Q Consensus 86 ~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~ 165 (616)
.+.-.++.|||..+.|+..+ | . ...|+++|..
T Consensus 208 sAP~~gicfspsne~l~vsV------------------------G---------------~---------Dkki~~yD~~ 239 (673)
T KOG4378|consen 208 SAPCRGICFSPSNEALLVSV------------------------G---------------Y---------DKKINIYDIR 239 (673)
T ss_pred cCCcCcceecCCccceEEEe------------------------c---------------c---------cceEEEeecc
Confidence 11134788999888776642 1 1 1357777773
Q ss_pred C--CeeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 166 G--TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 166 g--~~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
. ....|+...-.+.++|+++|.+|+....+ .+|+-||+.+.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~-------------G~~i~YD~R~~ 282 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNSK-------------GELIAYDMRST 282 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecCC-------------ceEEEEecccC
Confidence 2 34456554445789999999988877543 36888888754
No 191
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=94.02 E-value=0.41 Score=53.40 Aligned_cols=87 Identities=10% Similarity=0.018 Sum_probs=56.3
Q ss_pred eeEeccCCCCCCCCceEe-ccccccccceeecCCCceEEEeeeccC--ccEEEEEEeCCCCCCCceEEeecccccccCCC
Q 007140 277 IIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKT--SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP 353 (616)
Q Consensus 277 ~~~~~~~~~~~~g~~~~l-~~~~~~~~~~~wspDg~~l~~~~~~~~--~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~ 353 (616)
.|.+.|. ++..++.+ .........|.|||||+.|+|....+. +...||+-+|++....+..| +++. .
T Consensus 330 ~L~~~D~---dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl---~ve~----a 399 (912)
T TIGR02171 330 NLAYIDY---TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL---PVEN----A 399 (912)
T ss_pred eEEEEec---CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe---eccc----c
Confidence 5556577 66667766 566666778999999999888433444 67789999998853333333 2221 1
Q ss_pred CCCCeeeCCCCCEEEEEeee
Q 007140 354 GSPMMTRTSTGTNVIAKIKK 373 (616)
Q Consensus 354 g~~~~~~s~dgk~l~~~~~~ 373 (616)
..|.+...++|..+++....
T Consensus 400 aiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred cccceEecCCCCeEEEEEcC
Confidence 22335557888876655443
No 192
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.01 E-value=3.8 Score=42.23 Aligned_cols=134 Identities=14% Similarity=0.179 Sum_probs=77.5
Q ss_pred eEEEEeC-CC-CeeecCCC--CceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCC
Q 007140 158 QLVLGSL-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDI 233 (616)
Q Consensus 158 ~l~~~d~-~g-~~~~l~~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 233 (616)
.|.+..+ ++ +...++.+ ..+.-+.+||-.++++.....+ ..+.+||+.|.....-.. -....
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~------------G~VtlwDv~g~sp~~~~~--~~HsA 209 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDK------------GAVTLWDVQGMSPIFHAS--EAHSA 209 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccC------------CeEEEEeccCCCcccchh--hhccC
Confidence 4444555 33 34444443 3445688999888888876543 368899998764322111 00011
Q ss_pred CccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCce
Q 007140 234 PVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLA 312 (616)
Q Consensus 234 ~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~ 312 (616)
| .+++.++|.....|+-+ .....|+++|. ...... .|+ .......++|+++|..
T Consensus 210 P---------~~gicfspsne~l~vsV------------G~Dkki~~yD~---~s~~s~~~l~-y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 210 P---------CRGICFSPSNEALLVSV------------GYDKKINIYDI---RSQASTDRLT-YSHPLSTVAFSECGTY 264 (673)
T ss_pred C---------cCcceecCCccceEEEe------------cccceEEEeec---ccccccceee-ecCCcceeeecCCceE
Confidence 1 24688888876433333 23345666675 211111 122 2345677899999998
Q ss_pred EEEeeeccCccEEEEEEeCCCC
Q 007140 313 LVNETWYKTSQTRTWLVCPGSK 334 (616)
Q Consensus 313 l~~~~~~~~~~~~l~~~d~~~~ 334 (616)
|+... .+.+|+.+|+.+.
T Consensus 265 L~aG~----s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 265 LCAGN----SKGELIAYDMRST 282 (673)
T ss_pred EEeec----CCceEEEEecccC
Confidence 87654 2237999999875
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.97 E-value=2.1 Score=45.61 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=41.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
-+.+..|.|||+.|...+ +..|+++|+..|. ...+-.+++ . +...+||.||++++.
T Consensus 14 ci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHKD-t----VycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHKD-T----VYCVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEec-----------CCEEEEEeCCCcccccccccccc-e----EEEEEEccCCceecc
Confidence 478999999999988765 3689999998775 344433333 2 567899999998655
No 194
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=93.96 E-value=0.43 Score=49.71 Aligned_cols=91 Identities=12% Similarity=0.026 Sum_probs=56.3
Q ss_pred eeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-
Q 007140 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA- 560 (616)
Q Consensus 482 ~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~- 560 (616)
.....+...+|..+...++.|..-+ +.|+||++|+.. +....| . .....|+++||.|+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~-----~~~~Vl~lHG~~-----------~~~~~~---~-~~a~~L~~~Gy~V~~~ 169 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGE-----MRGILIIIHGLN-----------EHSGRY---L-HFAKQLTSCGFGVYAM 169 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCC-----CceEEEEECCch-----------HHHHHH---H-HHHHHHHHCCCEEEEe
Confidence 4456677889999999999996422 226777773210 000112 1 446779999999999
Q ss_pred CCCCCccccCCCccC-C--hhHHHHHHHHHHHHHHHHHc
Q 007140 561 GPSIPIIGEGDKLPN-D--RFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 561 n~R~GS~GyG~~f~~-~--~~g~~~~~D~~~~v~~l~~~ 596 (616)
|+| |. |..-.. + .......+|+.+.++++..+
T Consensus 170 D~r-Gh---G~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~ 204 (395)
T PLN02652 170 DWI-GH---GGSDGLHGYVPSLDYVVEDTEAFLEKIRSE 204 (395)
T ss_pred CCC-CC---CCCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 999 64 432111 1 11223467888888888754
No 195
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.77 E-value=0.6 Score=46.70 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec
Q 007140 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (616)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (616)
.+.+..+.++..|+||..|.-.+ + ...|-++|+.+.+.++.+....-...-.+....||||+++++--
T Consensus 338 v~~gg~vtSl~ls~~g~~lLsss-R---------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAG-- 405 (459)
T KOG0288|consen 338 VPLGGRVTSLDLSMDGLELLSSS-R---------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAG-- 405 (459)
T ss_pred eecCcceeeEeeccCCeEEeeec-C---------CCceeeeecccccEEEEeeccccccccccceeEECCCCceeeec--
Confidence 35555799999999999988764 2 24566779888777766533321111224567888988876541
Q ss_pred CCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeee-cC---CCCceeeee
Q 007140 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG---TPAVYTAVE 181 (616)
Q Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~-l~---~~~~~~~~~ 181 (616)
. ....+|++++ +|+... |. ....+..++
T Consensus 406 ------------------------S-----------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 406 ------------------------S-----------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred ------------------------c-----------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 0 1356888888 666554 32 122577899
Q ss_pred ECCCCcEEEEEe
Q 007140 182 PSPDQKYVLITS 193 (616)
Q Consensus 182 ~SpDg~~i~~~~ 193 (616)
|+|-|+.++-..
T Consensus 439 W~~sG~~Llsad 450 (459)
T KOG0288|consen 439 WNPSGSGLLSAD 450 (459)
T ss_pred EcCCCchhhccc
Confidence 999999987664
No 196
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=93.67 E-value=0.39 Score=48.11 Aligned_cols=100 Identities=14% Similarity=0.037 Sum_probs=61.6
Q ss_pred CcEEEEEEEcCCCCCCC-CCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCcccc
Q 007140 492 GVPLTATLYLPPGYDQS-KDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGE 569 (616)
Q Consensus 492 G~~l~g~l~~P~~~~~~-kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~Gy 569 (616)
+.++.-++++|...... ..|++|+|++.+|. | .....+. +-.+.||+.||+|.. +.= ||. .
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~------------G--s~~~~f~-~~A~~lAs~Gf~Va~~~hp-gs~-~ 111 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGS------------G--SYVTGFA-WLAEHLASYGFVVAAPDHP-GSN-A 111 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCC------------C--CCccchh-hhHHHHhhCceEEEeccCC-Ccc-c
Confidence 45677788888765431 23678999998431 1 1122223 557899999999999 888 753 3
Q ss_pred CCCcc--CC--hhH----HHHHHHHHHHHHHHHHc---C----CccCCceEEEe
Q 007140 570 GDKLP--ND--RFV----EQLVSSAEAAVEEVVRR---G----VGLPILYLNTT 608 (616)
Q Consensus 570 G~~f~--~~--~~g----~~~~~D~~~~v~~l~~~---~----~vD~~ri~~~~ 608 (616)
|+.=. .+ .+- -....|+-.-+++|++. + -+|+.||||-+
T Consensus 112 ~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~G 165 (365)
T COG4188 112 GGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLG 165 (365)
T ss_pred ccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEe
Confidence 32211 12 111 12346666667777655 4 58999999854
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.64 E-value=1.7 Score=46.04 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=33.6
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE-EEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
.+.++.|.|=..-++.++.. ...|.+||+...+. ..+... ..+..+++|||||+
T Consensus 679 KI~slRfHPLAadvLa~asy------------d~Ti~lWDl~~~~~~~~l~gH-------------tdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASY------------DSTIELWDLANAKLYSRLVGH-------------TDQIFGIAWSPDGR 733 (1012)
T ss_pred eEEEEEecchhhhHhhhhhc------------cceeeeeehhhhhhhheeccC-------------cCceeEEEECCCCc
Confidence 45678888865444443321 23688899865432 222221 11234689999998
Q ss_pred ceEEEE
Q 007140 255 STLYWV 260 (616)
Q Consensus 255 ~~l~~~ 260 (616)
. ++-+
T Consensus 734 ~-~AtV 738 (1012)
T KOG1445|consen 734 R-IATV 738 (1012)
T ss_pred c-eeee
Confidence 4 4443
No 198
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=93.55 E-value=0.37 Score=49.68 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=64.8
Q ss_pred CceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCC--chHHHHhhCCeE
Q 007140 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP--TSSLIFLARRFA 557 (616)
Q Consensus 480 ~~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~la~~Gy~ 557 (616)
.+.|...+++.||. |-.+=-.|... +++ |+|+..++- -.+...|....+ .-.-+||.+||=
T Consensus 46 y~~E~h~V~T~DgY-iL~lhRIp~~~--~~r---p~Vll~HGL-----------l~sS~~Wv~n~p~~sLaf~LadaGYD 108 (403)
T KOG2624|consen 46 YPVEEHEVTTEDGY-ILTLHRIPRGK--KKR---PVVLLQHGL-----------LASSSSWVLNGPEQSLAFLLADAGYD 108 (403)
T ss_pred CceEEEEEEccCCe-EEEEeeecCCC--CCC---CcEEEeecc-----------ccccccceecCccccHHHHHHHcCCc
Confidence 48999999999996 22223334333 333 777766321 112234432222 224479999999
Q ss_pred EEE-CCCCCccccCCCccC-----------ChhHHHHHHHHHHHHHHHHHc
Q 007140 558 VLA-GPSIPIIGEGDKLPN-----------DRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 558 Vl~-n~R~GS~GyG~~f~~-----------~~~g~~~~~D~~~~v~~l~~~ 596 (616)
|+. |.| | ..|++++.. =.|-+....|+-+.+|++++.
T Consensus 109 VWLgN~R-G-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~ 157 (403)
T KOG2624|consen 109 VWLGNNR-G-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK 157 (403)
T ss_pred eeeecCc-C-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh
Confidence 999 999 9 789998764 134566889999999999875
No 199
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.36 E-value=0.4 Score=52.17 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=54.6
Q ss_pred CceeEEEEECCCCceEeccc-CCCccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccc
Q 007140 60 CKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMT 138 (616)
Q Consensus 60 ~~~~l~v~~~~~g~~~~lt~-~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 138 (616)
....|.++|+.+-+..+.+. +.+ .+..+.|||||++|+..+.
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasm-------------------------------- 596 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASM-------------------------------- 596 (910)
T ss_pred CceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeec--------------------------------
Confidence 34788899987765444432 222 2678999999999988521
Q ss_pred cccccCCCcccceeEeccceEEEEeC-CCCee-ecCCCCceeeeeECCCCcEEEEEecc
Q 007140 139 DNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMH 195 (616)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~-~l~~~~~~~~~~~SpDg~~i~~~~~~ 195 (616)
.+.|.++|+ +|... -+.-.....++++||+|.+|+.+...
T Consensus 597 -----------------D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 597 -----------------DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred -----------------CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 135667777 66433 23222234689999999999988654
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=1.9 Score=43.33 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=34.7
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
..-.++++||..||--.. ++...||-++-.......... .+++..+.|||||+.|+++
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~t~l~e~~~------~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSMLTILEEIAH------HAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcchhhhhhHhh------cCccccceeCCCCcEEEEe
Confidence 456788999998877542 444445533321111111111 2337899999999999886
No 201
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.28 E-value=6.3 Score=37.93 Aligned_cols=57 Identities=5% Similarity=0.052 Sum_probs=35.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l 101 (616)
.++.++|.||.+.|+.+.+ ....|+.++.++.-.+++.-...+ ....+.+..+++.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d---------~~~~i~els~~G~vlr~i~l~g~~----D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD---------EPGEIYELSLDGKVLRRIPLDGFG----DYEGITYLGNGRYV 79 (248)
T ss_dssp -EEEEEEETTTTEEEEEET---------TTTEEEEEETT--EEEEEE-SS-S----SEEEEEE-STTEEE
T ss_pred CccccEEcCCCCeEEEEEC---------CCCEEEEEcCCCCEEEEEeCCCCC----CceeEEEECCCEEE
Confidence 3899999999999887763 457899999865444555322111 14466777666543
No 202
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=93.27 E-value=0.19 Score=46.52 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=54.6
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCC
Q 007140 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPS 563 (616)
Q Consensus 485 i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R 563 (616)
......||..+.|..+--.+..++ -++|.+..+ . +..|. . .+.+..+.+||.|+. +||
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~~~g-----~~~va~a~G-----------v--~~~fY--R-rfA~~a~~~Gf~Vlt~dyR 66 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGKASG-----RLVVAGATG-----------V--GQYFY--R-RFAAAAAKAGFEVLTFDYR 66 (281)
T ss_pred cccccCCCccCccccccCCCCCCC-----cEEecccCC-----------c--chhHh--H-HHHHHhhccCceEEEEecc
Confidence 456788999999886643333321 356655221 1 12221 1 567899999999999 999
Q ss_pred CCccccCCCccC-ChhH--HHHHHHHHHHHHHHHH
Q 007140 564 IPIIGEGDKLPN-DRFV--EQLVSSAEAAVEEVVR 595 (616)
Q Consensus 564 ~GS~GyG~~f~~-~~~g--~~~~~D~~~~v~~l~~ 595 (616)
|+.+--.+-.. ..|+ .-...|+.++++++.+
T Consensus 67 -G~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~ 100 (281)
T COG4757 67 -GIGQSRPASLSGSQWRYLDWARLDFPAALAALKK 100 (281)
T ss_pred -cccCCCccccccCccchhhhhhcchHHHHHHHHh
Confidence 87443222111 2233 2357889999999887
No 203
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.02 E-value=9 Score=41.64 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=73.1
Q ss_pred ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCccccccccceEEecCCcEEEEEec-CCCCCC
Q 007140 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDP 112 (616)
Q Consensus 35 ~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~-~~~~~~ 112 (616)
..-++|||+.|. ..+ +..+-+-++|.++.+. .+|. ... ......+++||++++++.. .+.+..
T Consensus 197 ~~PlpnDGk~l~-~~~--------ey~~~vSvID~etmeV~~qV~-Vdg-----npd~v~~spdGk~afvTsyNsE~G~t 261 (635)
T PRK02888 197 RIPLPNDGKDLD-DPK--------KYRSLFTAVDAETMEVAWQVM-VDG-----NLDNVDTDYDGKYAFSTCYNSEEGVT 261 (635)
T ss_pred ccccCCCCCEee-ccc--------ceeEEEEEEECccceEEEEEE-eCC-----CcccceECCCCCEEEEeccCcccCcc
Confidence 334677777552 221 3457778889887553 2321 111 1456789999998887642 111110
Q ss_pred C-CCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-C----C-Ce-eecCCCCceeeeeECC
Q 007140 113 P-KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-TA-KDFGTPAVYTAVEPSP 184 (616)
Q Consensus 113 ~-~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~----g-~~-~~l~~~~~~~~~~~Sp 184 (616)
. ....-.....+... ........ .++. +.+....++.++|. + + +. ..|.-+..-..+.+||
T Consensus 262 l~em~a~e~d~~vvfn-------i~~iea~v---kdGK-~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSP 330 (635)
T PRK02888 262 LAEMMAAERDWVVVFN-------IARIEEAV---KAGK-FKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSP 330 (635)
T ss_pred eeeeccccCceEEEEc-------hHHHHHhh---hCCC-EEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECC
Confidence 0 00000000000000 00000000 1111 22233467888888 5 3 22 2344444556899999
Q ss_pred CCcEEEEEeccCCCcccccCcccCccEEEEeCCC
Q 007140 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (616)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (616)
||++++++..-. ..+-++|++.
T Consensus 331 DGkylyVanklS------------~tVSVIDv~k 352 (635)
T PRK02888 331 DGKYFIANGKLS------------PTVTVIDVRK 352 (635)
T ss_pred CCCEEEEeCCCC------------CcEEEEEChh
Confidence 999999885332 3677888764
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.95 E-value=0.49 Score=46.66 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=50.5
Q ss_pred ceeeecCCCCC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007140 21 EKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (616)
Q Consensus 21 ~~~lt~~~~~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~ 99 (616)
.++++.+.+.. .+...+|||||..||-.+ ++++-|.|+.+..|+ +++....+.....+-+++|+||++
T Consensus 163 l~~v~~I~aH~~~lAalafs~~G~llATAS---------eKGTVIRVf~v~~G~--kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 163 LQPVNTINAHKGPLAALAFSPDGTLLATAS---------EKGTVIRVFSVPEGQ--KLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred ceeeeEEEecCCceeEEEECCCCCEEEEec---------cCceEEEEEEcCCcc--EeeeeeCCceeeEEEEEEECCCCC
Confidence 44444444433 578899999999999876 456899999998886 333333322222244889999999
Q ss_pred EEEEEe
Q 007140 100 LLIFTI 105 (616)
Q Consensus 100 ~l~~~~ 105 (616)
.|..+.
T Consensus 232 ~L~~sS 237 (391)
T KOG2110|consen 232 FLAASS 237 (391)
T ss_pred eEEEec
Confidence 887763
No 205
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.72 E-value=1.3 Score=44.40 Aligned_cols=77 Identities=21% Similarity=0.279 Sum_probs=49.3
Q ss_pred ccceEEEEeCCC-CeeecCCCC------ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE-EEecC
Q 007140 155 TTAQLVLGSLDG-TAKDFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCD 226 (616)
Q Consensus 155 ~~~~l~~~d~~g-~~~~l~~~~------~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~ 226 (616)
....|-++|+.+ ++++..... ..+.+.||||+.+++..+.+. .+++|++.+++. +.+..
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-------------sv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-------------SVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC-------------cEEEEEccCceEEEEecc
Confidence 345677788844 666543221 345889999999999887543 699999976654 44432
Q ss_pred CCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 227 LPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
+.. ..+.....|.|.|+.
T Consensus 428 -s~s----------~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 428 -STS----------NAAITSLSWNPSGSG 445 (459)
T ss_pred -CCC----------CcceEEEEEcCCCch
Confidence 110 112335789988875
No 206
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=92.55 E-value=2.9 Score=43.06 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=37.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~ 102 (616)
....+..|||.+ ++|..-. + .+|-|||+.... .|++-.+.++ .+.+..|+||..|-
T Consensus 511 aCyALa~spDak-vcFsccs-------d--GnI~vwDLhnq~~VrqfqGhtDG-----ascIdis~dGtklW 567 (705)
T KOG0639|consen 511 ACYALAISPDAK-VCFSCCS-------D--GNIAVWDLHNQTLVRQFQGHTDG-----ASCIDISKDGTKLW 567 (705)
T ss_pred hhhhhhcCCccc-eeeeecc-------C--CcEEEEEcccceeeecccCCCCC-----ceeEEecCCCceee
Confidence 456788999998 5776654 2 567777987765 4555433332 46777888887653
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=92.50 E-value=0.9 Score=47.07 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=34.9
Q ss_pred cccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
.+..+.|||||+.|+..+. ++..+|+.++.. +...+...-+. |..-++||||||+|+.-.
T Consensus 292 ~in~f~FS~DG~~LA~VSq--DGfLRvF~fdt~----eLlg~mkSYFG------GLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--DGFLRIFDFDTQ----ELLGVMKSYFG------GLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred cccceeEcCCCceEEEEec--CceEEEeeccHH----HHHHHHHhhcc------ceEEEEEcCCccEEEecC
Confidence 5567899999998776652 355566555432 11111111121 112289999999887543
No 208
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.49 E-value=13 Score=37.25 Aligned_cols=49 Identities=10% Similarity=-0.057 Sum_probs=30.1
Q ss_pred eeEeccCCCCCCCCceEeccc-cccccceeecCCCceEEEeeeccCccEEEEEEeCC
Q 007140 277 IIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (616)
Q Consensus 277 ~~~~~~~~~~~~g~~~~l~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~ 332 (616)
.+|.++. . |...++... -.....++||||++.+++.+. ...+||.++++
T Consensus 144 ~lyr~~p---~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT---~~~~i~r~~~d 193 (307)
T COG3386 144 SLYRVDP---D-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADT---PANRIHRYDLD 193 (307)
T ss_pred eEEEEcC---C-CCEEEeecCcEEecCceEECCCCCEEEEEeC---CCCeEEEEecC
Confidence 5666664 3 344444433 334456899999987655432 22378888876
No 209
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=92.37 E-value=0.27 Score=53.92 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=62.2
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCcc
Q 007140 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPII 567 (616)
Q Consensus 489 ~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~ 567 (616)
+-|-+.| =+|.|..-...+ +||+||+|+|.+. .++...+. .+....+++.+.-+|+. |||.|.-
T Consensus 93 sEDCLyl--NV~tp~~~~~~~---~pV~V~iHGG~~~--------~gs~~~~~--~~~~~~~~~~~~VVvVt~~YRLG~l 157 (545)
T KOG1516|consen 93 SEDCLYL--NVYTPQGCSESK---LPVMVYIHGGGFQ--------FGSASSFE--IISPAYVLLLKDVVVVTINYRLGPL 157 (545)
T ss_pred cCCCceE--EEeccCCCccCC---CCEEEEEeCCcee--------eccccchh--hcCchhccccCCEEEEEecccceec
Confidence 3344444 478887755432 6999999654332 22222221 11334556666888888 9999976
Q ss_pred ccCCCcc---CChhHHHHHHHHHHHHHHHHHc-C-C-ccCCceEEE
Q 007140 568 GEGDKLP---NDRFVEQLVSSAEAAVEEVVRR-G-V-GLPILYLNT 607 (616)
Q Consensus 568 GyG~~f~---~~~~g~~~~~D~~~~v~~l~~~-~-~-vD~~ri~~~ 607 (616)
|+...=- .++| .+.|++.|++|+.+. . + -||++|=+-
T Consensus 158 GF~st~d~~~~gN~---gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~ 200 (545)
T KOG1516|consen 158 GFLSTGDSAAPGNL---GLFDQLLALRWVKDNIPSFGGDPKNVTLF 200 (545)
T ss_pred eeeecCCCCCCCcc---cHHHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 6433221 1555 467999999999876 2 2 588887654
No 210
>PRK10749 lysophospholipase L2; Provisional
Probab=92.26 E-value=0.68 Score=47.08 Aligned_cols=102 Identities=15% Similarity=0.201 Sum_probs=55.9
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~ 560 (616)
.-|...+...||.+|+...+.|. ++ + |+||.++ |-......+. .....++++||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~--~~-~----~~vll~H--------------G~~~~~~~y~-~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAP--HH-D----RVVVICP--------------GRIESYVKYA-ELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCC--CC-C----cEEEEEC--------------CccchHHHHH-HHHHHHHHCCCeEEE
Confidence 55667788889999999888764 11 1 4555552 1111110001 234568899999999
Q ss_pred -CCCCCccccCCCccC---C---hhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 561 -GPSIPIIGEGDKLPN---D---RFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 561 -n~R~GS~GyG~~f~~---~---~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
|+| |...-+..+.. + .+ ..-.+|+.+.++.+++. .+..++.+-+
T Consensus 87 ~D~~-G~G~S~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~--~~~~~~~l~G 137 (330)
T PRK10749 87 IDHR-GQGRSGRLLDDPHRGHVERF-NDYVDDLAAFWQQEIQP--GPYRKRYALA 137 (330)
T ss_pred EcCC-CCCCCCCCCCCCCcCccccH-HHHHHHHHHHHHHHHhc--CCCCCeEEEE
Confidence 999 74222211111 1 11 23445666666665543 2335555543
No 211
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.26 E-value=0.59 Score=45.39 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=43.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECC---CCceEecccCCCcc--ccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~---~g~~~~lt~~~~~~--~~~~~~~~~wspdg~~l~~~ 104 (616)
.+..+++||||.++|++... .+..+||+.-+. .|.++.++..-... .......+.|++++.+++..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~-------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVED-------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred ceEEEEECCCCcEEEEEEec-------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 58899999999999999975 345788887553 34334443221100 01224589999999866554
No 212
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=91.93 E-value=1.3 Score=44.30 Aligned_cols=234 Identities=15% Similarity=0.225 Sum_probs=109.2
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
.+..+.|.|+|++|+..+... ++-+|+..+=.-+.+-. +.+ ..++.+.||++|.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-------------EFtLWNg~~fnFEtilQ---aHD---------s~Vr~m~ws~~g~- 151 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-------------EFTLWNGTSFNFETILQ---AHD---------SPVRTMKWSHNGT- 151 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-------------cEEEecCceeeHHHHhh---hhc---------ccceeEEEccCCC-
Confidence 356899999999999887644 34556553211111100 001 1145689999987
Q ss_pred eEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEecc-ccccccceeecCCCceEEEeeeccCccEEEEEEeCCCC
Q 007140 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSK 334 (616)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~ 334 (616)
|+-.-|.+ ..+-.|.. .-...+.+.. ....+..++|||+...|+..+ +++..+||- ..-.
T Consensus 152 ---wmiSgD~g---------G~iKyWqp---nmnnVk~~~ahh~eaIRdlafSpnDskF~t~S--dDg~ikiWd--f~~~ 212 (464)
T KOG0284|consen 152 ---WMISGDKG---------GMIKYWQP---NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS--DDGTIKIWD--FRMP 212 (464)
T ss_pred ---EEEEcCCC---------ceEEeccc---chhhhHHhhHhhhhhhheeccCCCCceeEEec--CCCeEEEEe--ccCC
Confidence 33222221 12222232 1011111111 224677899999766565544 234445554 3332
Q ss_pred CCCceEEee--cccccccCCCCCCCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEeeecCCCceeeeee
Q 007140 335 DVAPRVLFD--RVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWE 412 (616)
Q Consensus 335 ~~~~~~l~~--~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~ 412 (616)
.+.++|.. .++.. +.|.|.- .+++...+++ -.++ +|.++|. .|-.
T Consensus 213 -kee~vL~GHgwdVks---------vdWHP~k-gLiasgskDn--lVKl------------------WDprSg~--cl~t 259 (464)
T KOG0284|consen 213 -KEERVLRGHGWDVKS---------VDWHPTK-GLIASGSKDN--LVKL------------------WDPRSGS--CLAT 259 (464)
T ss_pred -chhheeccCCCCcce---------eccCCcc-ceeEEccCCc--eeEe------------------ecCCCcc--hhhh
Confidence 12355532 22322 7888864 4455543332 2222 5776664 3311
Q ss_pred cCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEeCCCCce-eeeeeCCCCCCccc--CCceeEEEEEC
Q 007140 413 SNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKS-SQITNFPHPYPTLA--SLQKEMIKYQR 489 (616)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~-~~Lt~~~~~~~~~~--~~~~e~i~~~~ 489 (616)
..+ ....+-+ ..|++++++| .+.+... .+.++|+...+. .............. .+-..+++.-.
T Consensus 260 lh~--HKntVl~-------~~f~~n~N~L-lt~skD~---~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 260 LHG--HKNTVLA-------VKFNPNGNWL-LTGSKDQ---SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred hhh--ccceEEE-------EEEcCCCCee-EEccCCc---eEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc
Confidence 111 0111211 4578888655 4444332 466777663321 11111111111111 12445566667
Q ss_pred CCCcEEEEEEE
Q 007140 490 KDGVPLTATLY 500 (616)
Q Consensus 490 ~DG~~l~g~l~ 500 (616)
.||.-++..+.
T Consensus 327 ~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 327 SDGSVVHWVVG 337 (464)
T ss_pred CCCceEEEecc
Confidence 78876665554
No 213
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=91.78 E-value=3 Score=42.01 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=67.8
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (616)
.-.++|...|.-| |++ +.-.-||.++.++|++..++...++.--...+.+.-.+ ...|+|+-...+..
T Consensus 117 PLGl~f~~~ggdL-~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~- 184 (376)
T KOG1520|consen 117 PLGIRFDKKGGDL-YVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYD- 184 (376)
T ss_pred cceEEeccCCCeE-EEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccc-
Confidence 3455666666533 333 33467888888888888887665432111123556666 33466752111100
Q ss_pred CCCcccCCCCeeeecCccccchhccc-cccccCCCcccceeEeccceEEEEeCCC-CeeecCCC-CceeeeeECCCCcEE
Q 007140 113 PKKTMVPLGPKIQSNEQKNIIISRMT-DNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTP-AVYTAVEPSPDQKYV 189 (616)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~~l~~~-~~~~~~~~SpDg~~i 189 (616)
-+.+ -+ .++.....+|+.+|... +.+.|.+. .+...+++|||+.++
T Consensus 185 ----------------------~rd~~~a---------~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfv 233 (376)
T KOG1520|consen 185 ----------------------RRDFVFA---------ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFV 233 (376)
T ss_pred ----------------------hhheEEe---------eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEE
Confidence 0000 00 01111457899999954 55565544 244689999999999
Q ss_pred EEEecc
Q 007140 190 LITSMH 195 (616)
Q Consensus 190 ~~~~~~ 195 (616)
+|....
T Consensus 234 l~~Et~ 239 (376)
T KOG1520|consen 234 LVAETT 239 (376)
T ss_pred EEEeec
Confidence 998653
No 214
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=91.74 E-value=0.48 Score=45.51 Aligned_cols=82 Identities=13% Similarity=0.057 Sum_probs=50.5
Q ss_pred EEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCccCC
Q 007140 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLPND 576 (616)
Q Consensus 498 ~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~ 576 (616)
.++.|..-. .| |++|+.++ -.. .+.| +-...+-+|+.||+|+. +.. ...+.+
T Consensus 7 ~v~~P~~~g---~y--PVv~f~~G---------~~~---~~s~---Ys~ll~hvAShGyIVV~~d~~-~~~~~~------ 59 (259)
T PF12740_consen 7 LVYYPSSAG---TY--PVVLFLHG---------FLL---INSW---YSQLLEHVASHGYIVVAPDLY-SIGGPD------ 59 (259)
T ss_pred EEEecCCCC---Cc--CEEEEeCC---------cCC---CHHH---HHHHHHHHHhCceEEEEeccc-ccCCCC------
Confidence 578887633 37 88888721 000 1222 00335679999999999 865 433321
Q ss_pred hhHHHHHHHHHHHHHHHHHc--C------CccCCceEEEe
Q 007140 577 RFVEQLVSSAEAAVEEVVRR--G------VGLPILYLNTT 608 (616)
Q Consensus 577 ~~g~~~~~D~~~~v~~l~~~--~------~vD~~ri~~~~ 608 (616)
...+.++..+-++||.+. . -+|-+||+|-+
T Consensus 60 --~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~G 97 (259)
T PF12740_consen 60 --DTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAG 97 (259)
T ss_pred --cchhHHHHHHHHHHHHhcchhhccccccccccceEEee
Confidence 235788888999998762 1 14777877754
No 215
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.71 E-value=4.4 Score=39.26 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=42.4
Q ss_pred CceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007140 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (616)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~ 99 (616)
..+++++... .++.+.|+||.+.|.-+.+ ...+|.-++.++.-.+.+.-..- .....+.|.-+|+
T Consensus 77 ~akpi~g~~~--nvS~LTynp~~rtLFav~n---------~p~~iVElt~~GdlirtiPL~g~----~DpE~Ieyig~n~ 141 (316)
T COG3204 77 DAKPILGETA--NVSSLTYNPDTRTLFAVTN---------KPAAIVELTKEGDLIRTIPLTGF----SDPETIEYIGGNQ 141 (316)
T ss_pred eccccccccc--cccceeeCCCcceEEEecC---------CCceEEEEecCCceEEEeccccc----CChhHeEEecCCE
Confidence 3445554434 4899999999998766653 45778778876655555531110 0134677887777
Q ss_pred EEEE
Q 007140 100 LLIF 103 (616)
Q Consensus 100 ~l~~ 103 (616)
.++.
T Consensus 142 fvi~ 145 (316)
T COG3204 142 FVIV 145 (316)
T ss_pred EEEE
Confidence 5443
No 216
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.27 E-value=16 Score=39.79 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=58.5
Q ss_pred CCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCc-----cccCcc---CCCCcceeecCCCce
Q 007140 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV-----CYNSVR---EGMRSISWRADKPST 256 (616)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~-----~~~~~~---~~~~~~~wspdg~~~ 256 (616)
||++|++....+ .++-+++++.-+..+|..+|....... ..+..+ .+....-++|||+.
T Consensus 140 dGr~~findk~n------------~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~- 206 (635)
T PRK02888 140 DGRYLFINDKAN------------TRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKD- 206 (635)
T ss_pred ceeEEEEecCCC------------cceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCE-
Confidence 889988775433 367788887666667766665433211 011111 01112334566651
Q ss_pred EEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEee-eccCccEEEEEEeCCC
Q 007140 257 LYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET-WYKTSQTRTWLVCPGS 333 (616)
Q Consensus 257 l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~-~~~~~~~~l~~~d~~~ 333 (616)
+ .. -.+.++.+.++|. +.-+...-...+.+.....+++||+.++... +.+.+ ..+..++...
T Consensus 207 l-~~----------~~ey~~~vSvID~---etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G-~tl~em~a~e 269 (635)
T PRK02888 207 L-DD----------PKKYRSLFTAVDA---ETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEG-VTLAEMMAAE 269 (635)
T ss_pred e-ec----------ccceeEEEEEEEC---ccceEEEEEEeCCCcccceECCCCCEEEEeccCcccC-cceeeecccc
Confidence 2 11 0123344555565 3212211112234566788999998754432 11112 2566666644
No 217
>COG1647 Esterase/lipase [General function prediction only]
Probab=91.03 E-value=0.33 Score=44.74 Aligned_cols=54 Identities=7% Similarity=-0.047 Sum_probs=43.5
Q ss_pred hHHHHhhCCeEEEE-CCCCCccccCCCccC---ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 547 SSLIFLARRFAVLA-GPSIPIIGEGDKLPN---DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~---~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
...+|..+||.|.. +|+ |-.--..+|.+ .+| ..|+.++-++|+++|+ +.|.|++
T Consensus 34 Lgr~L~e~GyTv~aP~yp-GHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~eI~v~G 91 (243)
T COG1647 34 LGRYLNENGYTVYAPRYP-GHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DEIAVVG 91 (243)
T ss_pred HHHHHHHCCceEecCCCC-CCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---CeEEEEe
Confidence 35689999999999 999 74334446665 677 8999999999999998 7888876
No 218
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=90.73 E-value=6.1 Score=40.83 Aligned_cols=184 Identities=12% Similarity=0.147 Sum_probs=99.1
Q ss_pred CCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCC
Q 007140 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (616)
Q Consensus 29 ~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~ 108 (616)
.+..+..-.++|||+.|..=. ....|-+||++.-.++.-....... .++ -.+.-|||.+ |.|..-
T Consensus 464 rdnyiRSckL~pdgrtLivGG----------eastlsiWDLAapTprikaeltssa-paC-yALa~spDak-vcFscc-- 528 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGG----------EASTLSIWDLAAPTPRIKAELTSSA-PAC-YALAISPDAK-VCFSCC-- 528 (705)
T ss_pred cccceeeeEecCCCceEEecc----------ccceeeeeeccCCCcchhhhcCCcc-hhh-hhhhcCCccc-eeeeec--
Confidence 444678889999999876532 2356667788875544322111100 000 1456788887 444311
Q ss_pred CCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CC-CeeecC-CCCceeeeeECCC
Q 007140 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFG-TPAVYTAVEPSPD 185 (616)
Q Consensus 109 ~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g-~~~~l~-~~~~~~~~~~SpD 185 (616)
....|.++|+ +. -++++- ..+...-+.+|+|
T Consensus 529 ----------------------------------------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 529 ----------------------------------------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ----------------------------------------------cCCcEEEEEcccceeeecccCCCCCceeEEecCC
Confidence 1235677777 33 456653 3345678999999
Q ss_pred CcEEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeec
Q 007140 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (616)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d 264 (616)
|..|.-...+ ..+.-||+. +.+..+ +...+. ...+.++|.+. |+.. .
T Consensus 563 GtklWTGGlD-------------ntvRcWDlregrqlqq---hdF~SQ-----------IfSLg~cP~~d----Wlav-G 610 (705)
T KOG0639|consen 563 GTKLWTGGLD-------------NTVRCWDLREGRQLQQ---HDFSSQ-----------IFSLGYCPTGD----WLAV-G 610 (705)
T ss_pred CceeecCCCc-------------cceeehhhhhhhhhhh---hhhhhh-----------heecccCCCcc----ceee-e
Confidence 9998744322 245567765 333222 111111 22456677776 3311 0
Q ss_pred CCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEe
Q 007140 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (616)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~ 316 (616)
...+.+.++.. .+.+..+|.-.+.-+-...|++-|+.|+..
T Consensus 611 --------Mens~vevlh~---skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 611 --------MENSNVEVLHT---SKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred --------cccCcEEEEec---CCccceeecccccEEEEEEecccCceeeec
Confidence 11223333343 333444565555555677888888877664
No 219
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=90.01 E-value=1.6 Score=46.72 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=44.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEe-cccCCCccccccccceEEecCCcEEEEEe
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~-lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (616)
.+.....||+|+.||-...... .....|++++..+-...+ |-.++- . +..+.|||||++|+-+.
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~-----~ehAvI~lw~t~~W~~~~~L~~HsL-T----VT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSL-----KEHAVIRLWNTANWLQVQELEGHSL-T----VTRLAFSPDGRYLLSVS 591 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCC-----ccceEEEEEeccchhhhheecccce-E----EEEEEECCCCcEEEEee
Confidence 5788999999999888654421 345679999987644333 322221 1 56899999999987763
No 220
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=89.79 E-value=5.2 Score=38.82 Aligned_cols=137 Identities=13% Similarity=0.214 Sum_probs=75.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+...+||.|+++|.-.+. ..-+.+..+++|+.-.-+.... ..+....|++||.+|+..+.+..-.
T Consensus 308 Gvt~l~FSrD~SqiLS~sf----------D~tvRiHGlKSGK~LKEfrGHs----Syvn~a~ft~dG~~iisaSsDgtvk 373 (508)
T KOG0275|consen 308 GVTCLSFSRDNSQILSASF----------DQTVRIHGLKSGKCLKEFRGHS----SYVNEATFTDDGHHIISASSDGTVK 373 (508)
T ss_pred CeeEEEEccCcchhhcccc----------cceEEEeccccchhHHHhcCcc----ccccceEEcCCCCeEEEecCCccEE
Confidence 4778999999999876542 2455566777776432221111 1256778999999988764432210
Q ss_pred -------CCCCcccCCCCeeeecCccccchhccccccccCCCc-ccceeEeccceEEEEeCCCC-eeecCCCC----cee
Q 007140 112 -------PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYD-ESLFDYYTTAQLVLGSLDGT-AKDFGTPA----VYT 178 (616)
Q Consensus 112 -------~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~l~~~d~~g~-~~~l~~~~----~~~ 178 (616)
.+..+-.|.+.... +...+..|.+ +...--.+.+.+|++++.|+ ++.++.+. ...
T Consensus 374 vW~~KtteC~~Tfk~~~~d~~------------vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 374 VWHGKTTECLSTFKPLGTDYP------------VNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFI 441 (508)
T ss_pred EecCcchhhhhhccCCCCccc------------ceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceE
Confidence 00000011111110 0011111222 22222225678999999996 45565542 234
Q ss_pred eeeECCCCcEEEEEec
Q 007140 179 AVEPSPDQKYVLITSM 194 (616)
Q Consensus 179 ~~~~SpDg~~i~~~~~ 194 (616)
...+||.|.||+....
T Consensus 442 ~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGE 457 (508)
T ss_pred EEEecCCCcEEEEEcc
Confidence 6789999999998854
No 221
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.70 E-value=27 Score=35.96 Aligned_cols=51 Identities=25% Similarity=0.212 Sum_probs=34.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEec
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (616)
.+-..+.||||++||+-- ....|.+|+..+.+.++.+....+. +.++.|-.
T Consensus 204 eil~~avS~Dgkylatgg----------~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~ 254 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG----------RDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRK 254 (479)
T ss_pred eeEEEEEcCCCcEEEecC----------CCceEEEecCcccchhhcccccccc----eeeeeeec
Confidence 356789999999998852 3456678899999888774332222 55556553
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=89.54 E-value=19 Score=35.24 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=38.9
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc-eEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
+..-+|++|++.||...+ +.+|.++...+.. ..++-..++- +..+..+.|+|.+.+|+-.
T Consensus 13 itchAwn~drt~iAv~~~----------~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN----------NHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred eeeeeecCCCceEEeccC----------CceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEc
Confidence 667799999999999864 3566666666655 2333222211 1235678999998777664
No 223
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.40 E-value=2.4 Score=41.94 Aligned_cols=134 Identities=11% Similarity=0.130 Sum_probs=70.2
Q ss_pred cceEEEEeC-CCC-eeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE--EEecCCCCCC
Q 007140 156 TAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV--RELCDLPPAE 231 (616)
Q Consensus 156 ~~~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~l~~~~~~~ 231 (616)
...|.++|+ .+. .+.+...-....++|+| ..+.+++.++. ..||.+|...-.. ....+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED------------~nlY~~DmR~l~~p~~v~~dh---- 271 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANED------------HNLYTYDMRNLSRPLNVHKDH---- 271 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeecccc------------ccceehhhhhhcccchhhccc----
Confidence 357889999 664 33443322235799999 44555554432 3577777542111 110000
Q ss_pred CCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccc--cccccceeecCC
Q 007140 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDD 309 (616)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~--~~~~~~~~wspD 309 (616)
.....++.+||-|+. |+.. +....|-++.+ ..+..+.+... -..+..+.||-|
T Consensus 272 ---------vsAV~dVdfsptG~E---fvsg----------syDksIRIf~~---~~~~SRdiYhtkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 272 ---------VSAVMDVDFSPTGQE---FVSG----------SYDKSIRIFPV---NHGHSRDIYHTKRMQHVFCVKYSMD 326 (433)
T ss_pred ---------ceeEEEeccCCCcch---hccc----------cccceEEEeec---CCCcchhhhhHhhhheeeEEEEecc
Confidence 011235678888874 2211 11112222233 33344443322 234567899999
Q ss_pred CceEEEeeeccCccEEEEEEeCCC
Q 007140 310 SLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 310 g~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
.++++..+ +++..+||...+..
T Consensus 327 skyi~SGS--dd~nvRlWka~Ase 348 (433)
T KOG0268|consen 327 SKYIISGS--DDGNVRLWKAKASE 348 (433)
T ss_pred ccEEEecC--CCcceeeeecchhh
Confidence 99877755 34677999987754
No 224
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.34 E-value=28 Score=36.02 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 173 TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 173 ~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
..+++...+|+|-..+|+++..- ...|-+||+...
T Consensus 152 htDYVR~g~~~~~~~hivvtGsY------------Dg~vrl~DtR~~ 186 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVTGSY------------DGKVRLWDTRSL 186 (487)
T ss_pred CcceeEeeccccCCCeEEEecCC------------CceEEEEEeccC
Confidence 44577889999998999988532 346788887644
No 225
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=89.28 E-value=37 Score=37.05 Aligned_cols=167 Identities=11% Similarity=0.047 Sum_probs=82.5
Q ss_pred cccceeecCCCceEEEeeec-cCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEeeecCCcc
Q 007140 300 RFRSVSWCDDSLALVNETWY-KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQ 378 (616)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~-~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~ 378 (616)
....+.-|||++.+++.-+. ...+..|-+.|+.++.--+.. +... ...++|.+|++.+++...+.+...
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~-----i~~~-----~~~~~Wa~d~~~lfYt~~d~~~rp 199 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDE-----ITNT-----SGSFAWAADGKTLFYTRLDENHRP 199 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchh-----hccc-----ccceEEecCCCeEEEEEEcCCCCc
Confidence 44567789998876554322 235667888888874211111 1110 123899999999999887654333
Q ss_pred cEEEEEecCCCCCCCcceeEeeecCCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEe
Q 007140 379 IYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (616)
Q Consensus 379 ~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~ 458 (616)
.++++.. ++.....-+.|.....+..+-.+.. +.+ +.+++...+...-.++++++
T Consensus 200 ~kv~~h~--------------~gt~~~~d~lvyeE~d~~f~~~v~~----------s~s-~~yi~i~~~~~~tsE~~ll~ 254 (682)
T COG1770 200 DKVWRHR--------------LGTPGSSDELVYEEKDDRFFLSVGR----------SRS-EAYIVISLGSHITSEVRLLD 254 (682)
T ss_pred ceEEEEe--------------cCCCCCcceEEEEcCCCcEEEEeee----------ccC-CceEEEEcCCCcceeEEEEe
Confidence 4455332 2211133333444332211111111 223 34445555455567899998
Q ss_pred CCCCc--eeeeeeCCCCCCcccC--CceeEEEEECCCCcEEEEEEEcCC
Q 007140 459 WPLKK--SSQITNFPHPYPTLAS--LQKEMIKYQRKDGVPLTATLYLPP 503 (616)
Q Consensus 459 ~~~~~--~~~Lt~~~~~~~~~~~--~~~e~i~~~~~DG~~l~g~l~~P~ 503 (616)
.+..+ ++.+..-. ....+.. ..-.++--.+.+| +=..++-.|.
T Consensus 255 a~~p~~~p~vv~pr~-~g~eY~~eh~~d~f~i~sN~~g-knf~l~~ap~ 301 (682)
T COG1770 255 ADDPEAEPKVVLPRE-NGVEYSVEHGGDRFYILSNADG-KNFKLVRAPV 301 (682)
T ss_pred cCCCCCceEEEEEcC-CCcEEeeeecCcEEEEEecCCC-cceEEEEccC
Confidence 87544 34443321 1122211 2222333344455 4444556666
No 226
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=89.24 E-value=21 Score=39.40 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=34.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~ 100 (616)
.+-.+.||.++-.|. +.. ++...|| .+...+.-.++.+.+ . +...+|.|-...
T Consensus 371 DILDlSWSKn~fLLS--SSM-------DKTVRLW--h~~~~~CL~~F~Hnd-f----VTcVaFnPvDDr 423 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLS--SSM-------DKTVRLW--HPGRKECLKVFSHND-F----VTCVAFNPVDDR 423 (712)
T ss_pred hheecccccCCeeEe--ccc-------cccEEee--cCCCcceeeEEecCC-e----eEEEEecccCCC
Confidence 477899999884332 222 3345555 666777777776655 2 678899984443
No 227
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=89.21 E-value=3.6 Score=39.17 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=65.8
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhh----CCe
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA----RRF 556 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~----~Gy 556 (616)
..+.+..+++-|..+.+..++|+-. +.++++|. ||+ ..+. . ....+|.. -.+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~--------------hGN--a~Dl-g-q~~~~~~~l~~~ln~ 89 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYS--------------HGN--AADL-G-QMVELFKELSIFLNC 89 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEc--------------CCc--ccch-H-HHHHHHHHHhhcccc
Confidence 6777888888999999999998664 33889988 332 2110 0 11223333 489
Q ss_pred EEEE-CCCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHc-CCccCCceEEEe
Q 007140 557 AVLA-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRR-GVGLPILYLNTT 608 (616)
Q Consensus 557 ~Vl~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~-~~vD~~ri~~~~ 608 (616)
-|+. ||| | ||..--+ .. ..+++|+.++.+||.+. | -++||++=+
T Consensus 90 nv~~~DYS-G---yG~S~G~psE--~n~y~Di~avye~Lr~~~g--~~~~Iil~G 136 (258)
T KOG1552|consen 90 NVVSYDYS-G---YGRSSGKPSE--RNLYADIKAVYEWLRNRYG--SPERIILYG 136 (258)
T ss_pred eEEEEecc-c---ccccCCCccc--ccchhhHHHHHHHHHhhcC--CCceEEEEE
Confidence 9999 999 6 5554332 11 14799999999999987 5 678888755
No 228
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=89.10 E-value=0.9 Score=49.55 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=44.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....|||||++|+-.+. ...|.+||+.+|...-....+.. -..+++||+|..|+.+
T Consensus 578 ritd~~FS~DgrWlisasm----------D~tIr~wDlpt~~lID~~~vd~~-----~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASM----------DSTIRTWDLPTGTLIDGLLVDSP-----CTSLSFSPNGDFLATV 635 (910)
T ss_pred ceeeeEeCCCCcEEEEeec----------CCcEEEEeccCcceeeeEecCCc-----ceeeEECCCCCEEEEE
Confidence 6899999999999988764 36788899999875433322221 2478999999999886
No 229
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.00 E-value=16 Score=39.97 Aligned_cols=110 Identities=16% Similarity=0.296 Sum_probs=57.2
Q ss_pred eeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC-CceEEEecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
+..+..|||++-|+-.+.++ .+-+|-++ |.+.+-+-.. ........+-|+.
T Consensus 553 V~smDIS~DSklivTgSADK-------------nVKiWGLdFGDCHKS~fAH-------------dDSvm~V~F~P~~-- 604 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVTGSADK-------------NVKIWGLDFGDCHKSFFAH-------------DDSVMSVQFLPKT-- 604 (888)
T ss_pred eeEEeccCCcCeEEeccCCC-------------ceEEeccccchhhhhhhcc-------------cCceeEEEEcccc--
Confidence 56789999999887665432 35556555 4444433210 0111234556632
Q ss_pred eEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEE
Q 007140 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (616)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~ 329 (616)
.++|....| ..+-.||.+.|. ....|..........+-+|+|..++..+ ++ ..-+||..
T Consensus 605 ~~FFt~gKD-----------~kvKqWDg~kFe--~iq~L~~H~~ev~cLav~~~G~~vvs~s-hD-~sIRlwE~ 663 (888)
T KOG0306|consen 605 HLFFTCGKD-----------GKVKQWDGEKFE--EIQKLDGHHSEVWCLAVSPNGSFVVSSS-HD-KSIRLWER 663 (888)
T ss_pred eeEEEecCc-----------ceEEeechhhhh--hheeeccchheeeeeEEcCCCCeEEecc-CC-ceeEeeec
Confidence 244442111 233334543332 3344554445566777899998776654 22 33466664
No 230
>PLN02511 hydrolase
Probab=88.34 E-value=2.9 Score=43.60 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=51.2
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCC-ccCCCCCchHHHHhhCCeEEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPN-EFSGMTPTSSLIFLARRFAVL 559 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~la~~Gy~Vl 559 (616)
..+...++..||..+.-..+.+....... ..|+||..++- .++.. .| .......+.++||.|+
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~~--~~p~vvllHG~-----------~g~s~~~y---~~~~~~~~~~~g~~vv 133 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALPA--DAPVLILLPGL-----------TGGSDDSY---VRHMLLRARSKGWRVV 133 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCCC--CCCEEEEECCC-----------CCCCCCHH---HHHHHHHHHHCCCEEE
Confidence 34445667789988774333332111111 12667766321 11111 12 0023345678999999
Q ss_pred E-CCCCCccccCCCcc-C-ChhHHHHHHHHHHHHHHHHHc
Q 007140 560 A-GPSIPIIGEGDKLP-N-DRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 560 ~-n~R~GS~GyG~~f~-~-~~~g~~~~~D~~~~v~~l~~~ 596 (616)
. |+| |- |..=. . ..+-....+|+.+++++|..+
T Consensus 134 ~~d~r-G~---G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~ 169 (388)
T PLN02511 134 VFNSR-GC---ADSPVTTPQFYSASFTGDLRQVVDHVAGR 169 (388)
T ss_pred EEecC-CC---CCCCCCCcCEEcCCchHHHHHHHHHHHHH
Confidence 9 999 73 33211 1 112223468999999998764
No 231
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.98 E-value=20 Score=38.68 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=82.5
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccC-C
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES-P 81 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~-~ 81 (616)
...+.|.+|.+++ .=+.+.+...+.-- ......|+-|++.+.+++. ...+|..+.+.+...+.+... +
T Consensus 402 ~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~~~ 471 (691)
T KOG2048|consen 402 VSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSIQS 471 (691)
T ss_pred ccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhcccc
Confidence 3456666776644 22333333333222 4668899999999888773 236777777766433322211 1
Q ss_pred CccccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEE
Q 007140 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (616)
Q Consensus 82 ~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~ 161 (616)
... ...+..+.-|+||++|+... ...+|++
T Consensus 472 ~~~-~~~I~~l~~SsdG~yiaa~~-------------------------------------------------t~g~I~v 501 (691)
T KOG2048|consen 472 QAK-CPSISRLVVSSDGNYIAAIS-------------------------------------------------TRGQIFV 501 (691)
T ss_pred ccC-CCcceeEEEcCCCCEEEEEe-------------------------------------------------ccceEEE
Confidence 111 11245678889999887751 2367899
Q ss_pred EeCCC-CeeecCC--CCceeeeeECCC-CcEEEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 162 GSLDG-TAKDFGT--PAVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 162 ~d~~g-~~~~l~~--~~~~~~~~~SpD-g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
+++.+ +-+.|.. ...++...++|. -..|++...+ ++++-+|++.+
T Consensus 502 ~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~-------------nQv~efdi~~~ 550 (691)
T KOG2048|consen 502 YNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN-------------NQVFEFDIEAR 550 (691)
T ss_pred EEcccceeecchhccCcceeeeeccccccCcEEEEecC-------------CeEEEEecchh
Confidence 99954 5554432 124567888865 4566666433 36777777433
No 232
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=4 Score=46.41 Aligned_cols=142 Identities=16% Similarity=0.271 Sum_probs=75.9
Q ss_pred cceEEEEeCCCCeeecCC-----CCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCCC
Q 007140 156 TAQLVLGSLDGTAKDFGT-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPP 229 (616)
Q Consensus 156 ~~~l~~~d~~g~~~~l~~-----~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~ 229 (616)
.+.|+++|++.-..+.+. .+.+..++|.-.-++|+.....+ ....+||+..+ .+-.+.+.+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKKKPIIKLSDTPG 205 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCCCcccccccCCC
Confidence 467899999552222221 12455677877667777665432 25778898755 3333443221
Q ss_pred CCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCC
Q 007140 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDD 309 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspD 309 (616)
+ .....+.|.||....|+.. ..|.. ...+-+||. -|...-.+.+....-.+-.+.|++.
T Consensus 206 ~-----------~~~S~l~WhP~~aTql~~A-s~dd~--------~PviqlWDl-R~assP~k~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 206 R-----------MHCSVLAWHPDHATQLLVA-SGDDS--------APVIQLWDL-RFASSPLKILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred c-----------cceeeeeeCCCCceeeeee-cCCCC--------CceeEeecc-cccCCchhhhcccccceeeeccCCC
Confidence 1 0022588999987655443 22111 123444554 2232233334334445567899986
Q ss_pred C-ceEEEeeeccCccEEEEEEeCCCC
Q 007140 310 S-LALVNETWYKTSQTRTWLVCPGSK 334 (616)
Q Consensus 310 g-~~l~~~~~~~~~~~~l~~~d~~~~ 334 (616)
+ ..++... .+ .+++..+..++
T Consensus 265 D~~lllSsg-kD---~~ii~wN~~tg 286 (1049)
T KOG0307|consen 265 DPRLLLSSG-KD---NRIICWNPNTG 286 (1049)
T ss_pred Cchhhhccc-CC---CCeeEecCCCc
Confidence 6 4444432 22 26888888773
No 233
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=87.74 E-value=14 Score=34.88 Aligned_cols=68 Identities=26% Similarity=0.322 Sum_probs=40.2
Q ss_pred CCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCC
Q 007140 19 GPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (616)
Q Consensus 19 g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg 98 (616)
..++.+...+. .+....|--..+.|.-. .+ + ..|.+||..+|+..+-...+. .+.++..|+||
T Consensus 134 App~E~~ghtg--~Ir~v~wc~eD~~iLSS--ad------d--~tVRLWD~rTgt~v~sL~~~s-----~VtSlEvs~dG 196 (334)
T KOG0278|consen 134 APPKEISGHTG--GIRTVLWCHEDKCILSS--AD------D--KTVRLWDHRTGTEVQSLEFNS-----PVTSLEVSQDG 196 (334)
T ss_pred CCchhhcCCCC--cceeEEEeccCceEEee--cc------C--CceEEEEeccCcEEEEEecCC-----CCcceeeccCC
Confidence 34444443333 36677776666654443 21 2 455666999987654433332 16789999999
Q ss_pred cEEEE
Q 007140 99 TLLIF 103 (616)
Q Consensus 99 ~~l~~ 103 (616)
+.|..
T Consensus 197 ~ilTi 201 (334)
T KOG0278|consen 197 RILTI 201 (334)
T ss_pred CEEEE
Confidence 97655
No 234
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=87.67 E-value=5.2 Score=41.90 Aligned_cols=109 Identities=11% Similarity=-0.025 Sum_probs=57.9
Q ss_pred ceeEEEEECC-CCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeE--
Q 007140 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA-- 557 (616)
Q Consensus 481 ~~e~i~~~~~-DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~-- 557 (616)
..+.++|.+. =|.+...+||.|++++ .++| |+|++.. |..+............|.++|.+
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~--PvlyllD--------------G~~w~~~~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PEER--PLAILLD--------------GQFWAESMPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CCCC--CEEEEEE--------------CHHhhhcCCHHHHHHHHHHcCCCCc
Confidence 4455666553 4677888999999997 3455 8888772 21111100001223457778833
Q ss_pred --EEE-CCCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHcC-CccCCceEEEee
Q 007140 558 --VLA-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRRG-VGLPILYLNTTA 609 (616)
Q Consensus 558 --Vl~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~~-~vD~~ri~~~~~ 609 (616)
|++ |.- ....+..++.. ..|-.-..++++..|+.-. + ..|+++.+|.+.
T Consensus 242 ~ivV~id~~-~~~~R~~el~~~~~f~~~l~~eLlP~I~~~y--~~~~d~~~~~IaG~ 295 (411)
T PRK10439 242 AVYLLIDAI-DTTHRSQELPCNADFWLAVQQELLPQVRAIA--PFSDDADRTVVAGQ 295 (411)
T ss_pred eEEEEECCC-CcccccccCCchHHHHHHHHHHHHHHHHHhC--CCCCCccceEEEEE
Confidence 445 543 33344444432 3333333444444444321 3 368888888764
No 235
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=86.57 E-value=1.3 Score=38.34 Aligned_cols=50 Identities=10% Similarity=-0.004 Sum_probs=32.3
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
...+.|+++||.|+. |+| +.... ...+++...++++.+. ..|++||++.+
T Consensus 17 ~~~~~l~~~G~~v~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~i~l~G 67 (145)
T PF12695_consen 17 PLAEALAEQGYAVVAFDYP-GHGDS-----------DGADAVERVLADIRAG-YPDPDRIILIG 67 (145)
T ss_dssp HHHHHHHHTTEEEEEESCT-TSTTS-----------HHSHHHHHHHHHHHHH-HCTCCEEEEEE
T ss_pred HHHHHHHHCCCEEEEEecC-CCCcc-----------chhHHHHHHHHHHHhh-cCCCCcEEEEE
Confidence 457889999999999 999 64332 1122444444444332 12999999876
No 236
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=86.17 E-value=59 Score=35.88 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.7
Q ss_pred CceeeeeECCCCcEEEEEeccC
Q 007140 175 AVYTAVEPSPDQKYVLITSMHR 196 (616)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~ 196 (616)
+.+..+++||||++|++.-.+.
T Consensus 509 ddvL~v~~Spdgk~LaVsLLdn 530 (888)
T KOG0306|consen 509 DDVLCVSVSPDGKLLAVSLLDN 530 (888)
T ss_pred ccEEEEEEcCCCcEEEEEeccC
Confidence 3456889999999999987654
No 237
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.03 E-value=2.4 Score=33.49 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.7
Q ss_pred ccceEEEEeC-CCCeeecCCC-CceeeeeECCCCcEEEEEecc
Q 007140 155 TTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (616)
Q Consensus 155 ~~~~l~~~d~-~g~~~~l~~~-~~~~~~~~SpDg~~i~~~~~~ 195 (616)
...+|+.+|+ +++.+.|..+ .+-.++++|||+++|+++...
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 4689999999 6677666543 244689999999999999754
No 238
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.99 E-value=13 Score=40.37 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=57.9
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCc
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (616)
....++++||++.|+..... .-+.+|.+..++.- ..+-.....|. ..+.+.|.|.
T Consensus 64 ~ita~~l~~d~~~L~~a~rs-------------~llrv~~L~tgk~i--rswKa~He~Pv---------i~ma~~~~g~- 118 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRS-------------QLLRVWSLPTGKLI--RSWKAIHEAPV---------ITMAFDPTGT- 118 (775)
T ss_pred hhheeeecCCccEEEEeecc-------------ceEEEEEcccchHh--HhHhhccCCCe---------EEEEEcCCCc-
Confidence 45689999998887766432 35677888755321 11100011111 1234445442
Q ss_pred eEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-EeccccccccceeecCCCce-EEEeeeccCccEEEEEEeCCC
Q 007140 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 256 ~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l~~~d~~~ 333 (616)
|.-. ......+-+||. +.+... .+-..++.+..+.|-|+-.. +++.. ..++ .+..+|+..
T Consensus 119 -LlAt-----------ggaD~~v~VWdi---~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg-~~D~--~v~vwnl~~ 180 (775)
T KOG0319|consen 119 -LLAT-----------GGADGRVKVWDI---KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG-ATDG--TVRVWNLND 180 (775)
T ss_pred -eEEe-----------ccccceEEEEEe---eCCEEEEEecCCCceEEEEEeCCccchhheeec-CCCc--eEEEEEccc
Confidence 2211 122345566676 543322 34444666777888888544 33322 2223 566667765
No 239
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=85.92 E-value=3.5 Score=40.21 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=56.6
Q ss_pred eeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-
Q 007140 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA- 560 (616)
Q Consensus 482 ~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~- 560 (616)
-..-.+++.+|.++.-...+|.+-.+.+ -+.+++|+|++. ..+.|. ..+-.|+..||+|+.
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~~~pr--~lv~~~HG~g~~------------~s~~~~----~~a~~l~~~g~~v~a~ 88 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSGTEPR--GLVFLCHGYGEH------------SSWRYQ----STAKRLAKSGFAVYAI 88 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCCCCCc--eEEEEEcCCccc------------chhhHH----HHHHHHHhCCCeEEEe
Confidence 3345567889999999999996643222 134555554321 001221 345679999999999
Q ss_pred CCCCCccccCCCccC--ChhHHHHHHHHHHHHHHHHHc
Q 007140 561 GPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 561 n~R~GS~GyG~~f~~--~~~g~~~~~D~~~~v~~l~~~ 596 (616)
|++ |- |....-.. .++ ..-++|+.+-++....+
T Consensus 89 D~~-Gh-G~SdGl~~yi~~~-d~~v~D~~~~~~~i~~~ 123 (313)
T KOG1455|consen 89 DYE-GH-GRSDGLHAYVPSF-DLVVDDVISFFDSIKER 123 (313)
T ss_pred ecc-CC-CcCCCCcccCCcH-HHHHHHHHHHHHHHhhc
Confidence 999 72 33222111 221 24578888888876655
No 240
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=85.66 E-value=3.4 Score=42.72 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=39.0
Q ss_pred CCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC--CceEecccCCCccccccccceEEecCCcEEEE
Q 007140 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 30 ~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~--g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
+..++-.++||||..||.-+. .+.||++.+.. -+..++-.... ..+..+.||+|++.|.-
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~----------d~~iyiy~Vs~~g~~y~r~~k~~g----s~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSH----------DNHIYIYRVSANGRKYSRVGKCSG----SPITHLDWSSDSQFLVS 508 (626)
T ss_pred CCceEEEEEcCCCCEEEEecC----------CCeEEEEEECCCCcEEEEeeeecC----ceeEEeeecCCCceEEe
Confidence 446889999999999998753 35666665543 33334322211 22557899999997654
No 241
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.63 E-value=16 Score=35.33 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCCceeeecCCCCCcccceEEccCCCe-EEEEEeeccccccCCCceeEEEEECCCCc-eEecccCCCccccccccceEEe
Q 007140 18 LGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWV 95 (616)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~-iaf~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~~~~~~~~~~ws 95 (616)
.|+.+--+.+|+. .....++|--.+ ++|.+ + .++-.+++|..+.. +..+...+..- .++-=.||
T Consensus 57 aGk~v~~~~lpaR--~Hgi~~~p~~~ravafAR-r--------PGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs 122 (366)
T COG3490 57 AGKIVFATALPAR--GHGIAFHPALPRAVAFAR-R--------PGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFS 122 (366)
T ss_pred CCceeeeeecccc--cCCeecCCCCcceEEEEe-c--------CCceEEEECCCCCcCcEEEecccCce---eecccccC
Confidence 3666666667764 778899997555 45544 2 35778888988764 44443332211 13455799
Q ss_pred cCCcEEEEE
Q 007140 96 NNSTLLIFT 104 (616)
Q Consensus 96 pdg~~l~~~ 104 (616)
|||++|+-+
T Consensus 123 ~dG~~LYAT 131 (366)
T COG3490 123 PDGRLLYAT 131 (366)
T ss_pred CCCcEEEee
Confidence 999987664
No 242
>KOG3101 consensus Esterase D [General function prediction only]
Probab=85.51 E-value=3.2 Score=38.01 Aligned_cols=100 Identities=18% Similarity=0.251 Sum_probs=60.9
Q ss_pred EEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-C--CCCCc----
Q 007140 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-G--PSIPI---- 566 (616)
Q Consensus 494 ~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n--~R~GS---- 566 (616)
.+.=-+|+|+++..+|+ .|++.|.-+ .+ =.+..|..-. .+.|.-...|.+|+. | +| |-
T Consensus 27 ~Mtf~vylPp~a~~~k~--~P~lf~LSG----------LT-CT~~Nfi~Ks-g~qq~As~hgl~vV~PDTSPR-G~~v~g 91 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGKR--CPVLFYLSG----------LT-CTHENFIEKS-GFQQQASKHGLAVVAPDTSPR-GVEVAG 91 (283)
T ss_pred ceEEEEecCCCcccCCc--CceEEEecC----------Cc-ccchhhHhhh-hHHHhHhhcCeEEECCCCCCC-ccccCC
Confidence 34445899999988775 599999811 11 0112231111 334556677999998 4 66 62
Q ss_pred ------cccCCCcc-C---ChhHH--HHHHHHHHHHHHHHHc--CCccCCceEEEe
Q 007140 567 ------IGEGDKLP-N---DRFVE--QLVSSAEAAVEEVVRR--GVGLPILYLNTT 608 (616)
Q Consensus 567 ------~GyG~~f~-~---~~~g~--~~~~D~~~~v~~l~~~--~~vD~~ri~~~~ 608 (616)
-|-|..|- + ..|.+ .||+=+..-+-.++.. -.+|+.|++|++
T Consensus 92 ~~eswDFG~GAGFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfG 147 (283)
T KOG3101|consen 92 DDESWDFGQGAGFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFG 147 (283)
T ss_pred CcccccccCCceeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceec
Confidence 23344443 1 44543 5777777666666654 359999999986
No 243
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=85.24 E-value=22 Score=36.36 Aligned_cols=113 Identities=19% Similarity=0.224 Sum_probs=66.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC--ceEecccCCCccccccccceEEecCCcEEEEEecCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g--~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~ 109 (616)
.+...+|+|--+.+.-.+. ....|.++|+.++ ++....... .+.+..++|.|-+..|+-+..
T Consensus 229 ~VeDV~~h~~h~~lF~sv~---------dd~~L~iwD~R~~~~~~~~~~~ah----~~~vn~~~fnp~~~~ilAT~S--- 292 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVG---------DDGKLMIWDTRSNTSKPSHSVKAH----SAEVNCVAFNPFNEFILATGS--- 292 (422)
T ss_pred ceehhhccccchhhheeec---------CCCeEEEEEcCCCCCCCccccccc----CCceeEEEeCCCCCceEEecc---
Confidence 4677888887666544442 2367777798853 322222111 123668889987775554311
Q ss_pred CCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC---CeeecC-CCCceeeeeECCC
Q 007140 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG---TAKDFG-TPAVYTAVEPSPD 185 (616)
Q Consensus 110 ~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g---~~~~l~-~~~~~~~~~~SpD 185 (616)
....+.++|+.. .+..+. ..+.+..+.|||.
T Consensus 293 ---------------------------------------------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 293 ---------------------------------------------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred ---------------------------------------------CCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 113455566622 222222 2345678999999
Q ss_pred CcEEEEEeccCCCcccccCcccCccEEEEeCC
Q 007140 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (616)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (616)
-..|+.++... +.+-+||+.
T Consensus 328 ~etvLASSg~D------------~rl~vWDls 347 (422)
T KOG0264|consen 328 NETVLASSGTD------------RRLNVWDLS 347 (422)
T ss_pred CCceeEecccC------------CcEEEEecc
Confidence 99888876532 367888876
No 244
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=85.13 E-value=9.1 Score=38.03 Aligned_cols=128 Identities=17% Similarity=0.230 Sum_probs=72.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+...+.+-||..+|-.++ .+.|.+|.+++++.+++....+-. +...+|.|... + ++-..+
T Consensus 237 wvr~v~v~~DGti~As~s~----------dqtl~vW~~~t~~~k~~lR~hEh~----vEci~wap~~~---~--~~i~~a 297 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSN----------DQTLRVWVVATKQCKAELREHEHP----VECIAWAPESS---Y--PSISEA 297 (406)
T ss_pred hEEEEEecCCeeEEEecCC----------CceEEEEEeccchhhhhhhccccc----eEEEEeccccc---C--cchhhc
Confidence 4667788889987776653 355666666777655554333322 55778988654 1 110000
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC--eeecCCCCceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~--~~~l~~~~~~~~~~~SpDg~~ 188 (616)
.+.. ..++.. ...+ ....|-.+|+ +|. .+.......+.+++|||.||+
T Consensus 298 t~~~---~~~~~l-----------------~s~S---------rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 298 TGST---NGGQVL-----------------GSGS---------RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred cCCC---CCccEE-----------------Eeec---------ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeE
Confidence 0000 000000 0000 1235666777 563 233344557789999999999
Q ss_pred EEEEeccCCCcccccCcccCccEEEEeCCCce
Q 007140 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (616)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (616)
|+-.+.+. .|.+||+..++
T Consensus 349 i~ScaDDk-------------tlrvwdl~~~~ 367 (406)
T KOG0295|consen 349 ILSCADDK-------------TLRVWDLKNLQ 367 (406)
T ss_pred EEEEecCC-------------cEEEEEeccce
Confidence 99876543 58899987553
No 245
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=85.07 E-value=51 Score=34.18 Aligned_cols=122 Identities=15% Similarity=0.075 Sum_probs=74.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
......++|+|+.+...-.. .+...++++|..+++.......... ......+|+|+.++....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~-------~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~~~----- 179 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG-------NGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVTNS----- 179 (381)
T ss_pred CCceEEECCCCCEEEEEecc-------cCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEEec-----
Confidence 46688999999986554321 2468899999888765443211111 235778888887766410
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeCCC-Ceee------cCCCCceeeeeECC
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKD------FGTPAVYTAVEPSP 184 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~~g-~~~~------l~~~~~~~~~~~Sp 184 (616)
....|.++|.++ ...+ +.....-..+.++|
T Consensus 180 -------------------------------------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 180 -------------------------------------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred -------------------------------------------CCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 124566666644 3332 11122224789999
Q ss_pred CCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEE
Q 007140 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (616)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (616)
||+++++...... ...+.++|...+.+..
T Consensus 217 ~g~~~yV~~~~~~----------~~~v~~id~~~~~v~~ 245 (381)
T COG3391 217 DGNRVYVANDGSG----------SNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCEEEEEeccCC----------CceEEEEeCCCceEEE
Confidence 9999888754331 1367788887766554
No 246
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=84.88 E-value=7.1 Score=36.89 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCcc
Q 007140 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPII 567 (616)
Q Consensus 489 ~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~ 567 (616)
-.||.+|.-|=.+|..-.+. +. |.|+.- ||+ +..+ ..|. .-+.||+.+||.|+- |.- .
T Consensus 9 ~~~~~~I~vwet~P~~~~~~-~~--~tiliA-~Gf------~rrm----dh~a----gLA~YL~~NGFhViRyDsl---~ 67 (294)
T PF02273_consen 9 LEDGRQIRVWETRPKNNEPK-RN--NTILIA-PGF------ARRM----DHFA----GLAEYLSANGFHVIRYDSL---N 67 (294)
T ss_dssp ETTTEEEEEEEE---TTS----S---EEEEE--TT-------GGG----GGGH----HHHHHHHTTT--EEEE------B
T ss_pred cCCCCEEEEeccCCCCCCcc-cC--CeEEEe-cch------hHHH----HHHH----HHHHHHhhCCeEEEecccc---c
Confidence 35899999999999986664 34 555543 111 0001 1221 346799999999999 443 2
Q ss_pred ccCCCccC-Chh-HHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 568 GEGDKLPN-DRF-VEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 568 GyG~~f~~-~~~-g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
.-|..--. .++ -...-+|+...++||.+.|. .++|+-.
T Consensus 68 HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIA 107 (294)
T PF02273_consen 68 HVGLSSGDINEFTMSIGKASLLTVIDWLATRGI---RRIGLIA 107 (294)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTT------EEEEE
T ss_pred cccCCCCChhhcchHHhHHHHHHHHHHHHhcCC---Ccchhhh
Confidence 22221111 222 24567999999999998885 4566544
No 247
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=84.56 E-value=3.6 Score=40.74 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=34.1
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcC
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG 597 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~ 597 (616)
.....+..+||.|+. |+| |-.|--..-+ .-|-..+.+|+..++++|.++.
T Consensus 95 ~L~~~~~~rg~~~Vv~~~R-gcs~~~n~~p-~~yh~G~t~D~~~~l~~l~~~~ 145 (345)
T COG0429 95 GLMRALSRRGWLVVVFHFR-GCSGEANTSP-RLYHSGETEDIRFFLDWLKARF 145 (345)
T ss_pred HHHHHHHhcCCeEEEEecc-cccCCcccCc-ceecccchhHHHHHHHHHHHhC
Confidence 345678999999999 999 8544322111 2222335699999999998863
No 248
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=84.26 E-value=2.8 Score=43.43 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=56.6
Q ss_pred CCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCC--CccCCCCCchHHHHhhCCe-EEEE-CCCCCc
Q 007140 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP--NEFSGMTPTSSLIFLARRF-AVLA-GPSIPI 566 (616)
Q Consensus 491 DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~q~la~~Gy-~Vl~-n~R~GS 566 (616)
|=+-|. +..|. .+| |.+-++||+|+|-+- .|.| +-|+ -.+||+.+= +|+. |||.|-
T Consensus 119 DCLYlN--VW~P~-~~p---~n~tVlVWiyGGGF~--------sGt~SLdvYd------Gk~la~~envIvVs~NYRvG~ 178 (601)
T KOG4389|consen 119 DCLYLN--VWAPA-ADP---YNLTVLVWIYGGGFY--------SGTPSLDVYD------GKFLAAVENVIVVSMNYRVGA 178 (601)
T ss_pred hceEEE--EeccC-CCC---CCceEEEEEEcCccc--------cCCcceeeec------cceeeeeccEEEEEeeeeecc
Confidence 444444 44564 344 334599999876443 3433 2343 245777775 4555 999877
Q ss_pred ccc----CCCccCChhHHHHHHHHHHHHHHHHHc-C-C-ccCCceEEEe
Q 007140 567 IGE----GDKLPNDRFVEQLVSSAEAAVEEVVRR-G-V-GLPILYLNTT 608 (616)
Q Consensus 567 ~Gy----G~~f~~~~~g~~~~~D~~~~v~~l~~~-~-~-vD~~ri~~~~ 608 (616)
-|| |..=.-|++| +=|+.-|++|+.+. . + -||+||-+-+
T Consensus 179 FGFL~l~~~~eaPGNmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFG 224 (601)
T KOG4389|consen 179 FGFLYLPGHPEAPGNMG---LLDQQLALQWVQENIAAFGGNPSRVTLFG 224 (601)
T ss_pred ceEEecCCCCCCCCccc---hHHHHHHHHHHHHhHHHhCCCcceEEEec
Confidence 665 1111116665 77888999999876 1 2 6999986643
No 249
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.13 E-value=12 Score=37.16 Aligned_cols=36 Identities=11% Similarity=-0.056 Sum_probs=24.2
Q ss_pred eccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 294 l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
|...+..+...+|+|.|++|+..... + .|-+.|+.+
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDD--k--tlrvwdl~~ 365 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADD--K--TLRVWDLKN 365 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecC--C--cEEEEEecc
Confidence 44566678899999999998776532 3 344455554
No 250
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=84.04 E-value=11 Score=39.18 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=34.8
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.....|.|.| .||.=.. ....+++|.++.....+-.. +..++-..+||||..|+.-
T Consensus 410 ~~~~~fhpsg-~va~Gt~----------~G~w~V~d~e~~~lv~~~~d-----~~~ls~v~ysp~G~~lAvg 465 (626)
T KOG2106|consen 410 AECADFHPSG-VVAVGTA----------TGRWFVLDTETQDLVTIHTD-----NEQLSVVRYSPDGAFLAVG 465 (626)
T ss_pred eeEeeccCcc-eEEEeec----------cceEEEEecccceeEEEEec-----CCceEEEEEcCCCCEEEEe
Confidence 4456677777 5554332 35677888877544444222 2346778899999988774
No 251
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=83.83 E-value=37 Score=34.79 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=34.9
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....|.|||- .|.... ....|-+||+..+. -++.++.. .+.+..++||.+|=+|+..
T Consensus 349 ~~ts~~fHpDgL--ifgtgt--------~d~~vkiwdlks~~--~~a~Fpgh--t~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 349 EYTSAAFHPDGL--IFGTGT--------PDGVVKIWDLKSQT--NVAKFPGH--TGPVKAISFSENGYWLATA 407 (506)
T ss_pred eeEEeeEcCCce--EEeccC--------CCceEEEEEcCCcc--ccccCCCC--CCceeEEEeccCceEEEEE
Confidence 467888888884 443322 23566666887665 33333321 1225678888888777664
No 252
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=83.34 E-value=29 Score=37.01 Aligned_cols=143 Identities=10% Similarity=0.039 Sum_probs=80.5
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeec-cccccCCCceeEEEEECCCCceEecccCCCcc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~-~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~ 84 (616)
||-|..+.. ++...|...-+....-...||-.-.+..++.... ..++ +..-+-.+|....++.+++.-.. ..
T Consensus 185 Nl~L~~~~~----~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g--~~~~d~ciYE~~r~klqrvsvts-ip 257 (545)
T PF11768_consen 185 NLHLLSCSG----GKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKG--EPSADSCIYECSRNKLQRVSVTS-IP 257 (545)
T ss_pred cEEEEEecC----CcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCC--CceeEEEEEEeecCceeEEEEEE-Ee
Confidence 677777753 5666776544444456678887555555655431 1111 23345556676666665553211 12
Q ss_pred ccccccceEEecCCcEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC
Q 007140 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~ 164 (616)
+...+...+++|+.++|+.--. .+.|.++|.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~-------------------------------------------------DgSiiLyD~ 288 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCE-------------------------------------------------DGSIILYDT 288 (545)
T ss_pred cCCcceEEecCcccceEEEEec-------------------------------------------------CCeEEEEEc
Confidence 2333556788888887776311 134555665
Q ss_pred CCCeeecCCCC-ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC
Q 007140 165 DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (616)
Q Consensus 165 ~g~~~~l~~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (616)
+-....++... ....++|+|+|..+++.+.. .++..+|..
T Consensus 289 ~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-------------GelQ~FD~A 329 (545)
T PF11768_consen 289 TRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-------------GELQCFDMA 329 (545)
T ss_pred CCCeeeeeeecccceEEEEcCCCcEEEEEcCC-------------ceEEEEEee
Confidence 33333333222 23478999999888777532 368888865
No 253
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=82.82 E-value=12 Score=38.79 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=34.4
Q ss_pred cccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeeccccccc-----------CCCCC-CCeeeCCCCCEE
Q 007140 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVY-----------SDPGS-PMMTRTSTGTNV 367 (616)
Q Consensus 300 ~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~-----------~~~g~-~~~~~s~dgk~l 367 (616)
-...+..|-|.+.|+...|-. + ++..+|+..+ .+|+++-+-.+...+ ...|+ .+++.|-|||+|
T Consensus 313 LitDI~iSlDDrfLYvs~W~~-G--dvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLH-G--DVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp ----EEE-TTS-EEEEEETTT-T--EEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred ceEeEEEccCCCEEEEEcccC-C--cEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence 345677899999888877643 3 6888888775 356665211111110 11233 478999999999
Q ss_pred EEEee
Q 007140 368 IAKIK 372 (616)
Q Consensus 368 ~~~~~ 372 (616)
|++.+
T Consensus 389 YvTnS 393 (461)
T PF05694_consen 389 YVTNS 393 (461)
T ss_dssp EEE--
T ss_pred EEEee
Confidence 99753
No 254
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=82.72 E-value=11 Score=36.24 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=36.6
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceE-ecccCCCcc-ccccccceEEec--CCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDIC-LNAVFGSFVWVN--NSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~-~lt~~~~~~-~~~~~~~~~wsp--dg~~l~~~ 104 (616)
.+.-+.|-||+.+||-+.. ++|-+++++.+..+ +....+... -...+.+-.||| ||..++.+
T Consensus 125 ~i~cvew~Pns~klasm~d-----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD-----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred ceeeEEEcCCCCeeEEecc-----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 4678899999999998862 56777777766542 111111100 011234567887 66666654
No 255
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=82.06 E-value=4.1 Score=40.61 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=40.0
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~ 560 (616)
....-.+.+.||..+......|..... -+||.+++.. + |. ..| . ...+.|+++||.|+.
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~~~------g~Vvl~HG~~----E-----h~--~ry---~-~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEPPK------GVVVLVHGLG----E-----HS--GRY---E-ELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCCCC------cEEEEecCch----H-----HH--HHH---H-HHHHHHHhCCCEEEE
Confidence 334456778899999888887765332 3444442110 0 10 122 1 447899999999999
Q ss_pred -CCCCC
Q 007140 561 -GPSIP 565 (616)
Q Consensus 561 -n~R~G 565 (616)
|-| |
T Consensus 67 ~D~R-G 71 (298)
T COG2267 67 LDLR-G 71 (298)
T ss_pred ecCC-C
Confidence 999 6
No 256
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=81.60 E-value=56 Score=32.11 Aligned_cols=67 Identities=6% Similarity=-0.109 Sum_probs=35.4
Q ss_pred cccccCCEEEEEeecCCCCceEEEEeCCCCceeeeeeCCC-CCCcccCC---ceeEEEEECCCCcEEEEEEEcCC
Q 007140 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPH-PYPTLASL---QKEMIKYQRKDGVPLTATLYLPP 503 (616)
Q Consensus 433 ~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~-~~~~~~~~---~~e~i~~~~~DG~~l~g~l~~P~ 503 (616)
-||-+|.+++ ..+ ...-.||+-.-..|.+.++-.-+. .......| .|-.... +.+-.-|++.+..|.
T Consensus 256 cfs~dgeYv~-a~s--~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 256 CFSGDGEYVC-AGS--ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred eecCCccEEE-ecc--ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 3455665443 333 556778888877777655543322 11111223 3333333 334457888887774
No 257
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=81.44 E-value=3.8 Score=40.69 Aligned_cols=59 Identities=22% Similarity=0.086 Sum_probs=36.6
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHH-cCCccCCceEEEe
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR-RGVGLPILYLNTT 608 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~-~~~vD~~ri~~~~ 608 (616)
...+.|+++||+|+. ||- | .|..|..+.-....+-|.+-|++.+.. .|+--..|+++.+
T Consensus 17 ~~l~~~L~~GyaVv~pDY~-G---lg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~G 77 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYE-G---LGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWG 77 (290)
T ss_pred HHHHHHHHCCCEEEecCCC-C---CCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEe
Confidence 446789999999999 999 5 566887644333334444444444433 2443446777764
No 258
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=81.12 E-value=53 Score=31.52 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=33.2
Q ss_pred eEEEEeC-CCC-eeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC
Q 007140 158 QLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (616)
Q Consensus 158 ~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (616)
.+-++|+ +|+ ...+..+..+..+.||++|..+++...... . ....|.++++.
T Consensus 75 t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~m-g-------~~~~v~~fdi~ 128 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQM-G-------YTCFVSVFDIR 128 (327)
T ss_pred eeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhc-C-------cceEEEEEEcc
Confidence 4455676 664 344444445678999999999999876532 1 13467777765
No 259
>PRK00870 haloalkane dehalogenase; Provisional
Probab=80.90 E-value=7.9 Score=38.56 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.4
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCC
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDK 572 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~ 572 (616)
...|+++||.|+. |.| | +|..
T Consensus 66 ~~~L~~~gy~vi~~Dl~-G---~G~S 87 (302)
T PRK00870 66 IPILAAAGHRVIAPDLI-G---FGRS 87 (302)
T ss_pred HHHHHhCCCEEEEECCC-C---CCCC
Confidence 4567788999999 999 5 5543
No 260
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=80.37 E-value=15 Score=35.97 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=33.2
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECC-CCc-eEec-ccCC-CccccccccceEEec-CCcEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGE-AKPL-FESP-DICLNAVFGSFVWVN-NSTLLIF 103 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~-~g~-~~~l-t~~~-~~~~~~~~~~~~wsp-dg~~l~~ 103 (616)
...+.|||||++|.-= .+..|.++|+. .|. .... |... +-....+++.++++| +.+.+++
T Consensus 161 AhsL~Fs~DGeqlfaG-----------ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~ 225 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAG-----------YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV 225 (406)
T ss_pred heeEEecCCCCeEeec-----------ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceee
Confidence 4578999999996542 24678888883 342 2222 1111 101122355677776 4445555
No 261
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=80.06 E-value=3.6 Score=40.74 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=43.8
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC-ceEecccCCCcc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDIC 84 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g-~~~~lt~~~~~~ 84 (616)
.|+|.++.. ....+.+. -.-.-+.++|+| +-.-|++. +...+||.+|...= .+..+.....
T Consensus 211 sIvLyD~R~---~~Pl~KVi---~~mRTN~IswnP--eafnF~~a--------~ED~nlY~~DmR~l~~p~~v~~dhv-- 272 (433)
T KOG0268|consen 211 SIVLYDLRQ---ASPLKKVI---LTMRTNTICWNP--EAFNFVAA--------NEDHNLYTYDMRNLSRPLNVHKDHV-- 272 (433)
T ss_pred ceEEEeccc---CCccceee---eeccccceecCc--cccceeec--------cccccceehhhhhhcccchhhcccc--
Confidence 467777642 22223332 222467999999 54667764 34578999997642 2333321111
Q ss_pred ccccccceEEecCCcEEEE
Q 007140 85 LNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 85 ~~~~~~~~~wspdg~~l~~ 103 (616)
++ +-...|||-|+-++.
T Consensus 273 -sA-V~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 273 -SA-VMDVDFSPTGQEFVS 289 (433)
T ss_pred -ee-EEEeccCCCcchhcc
Confidence 11 346778888886544
No 262
>PRK13614 lipoprotein LpqB; Provisional
Probab=80.03 E-value=22 Score=38.79 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=44.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEEC---CCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~---~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+..+++|+||-|+|.+... ++..+|++.-+ ..|+++.|+..-..........+.|..++..++..
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQ-------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred eeEEEEECCCccEEEEEEEe-------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 48899999999999999864 45566776433 45777888643221101124578999988855443
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.02 E-value=1.2e+02 Score=35.51 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=27.4
Q ss_pred eeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007140 62 LRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 62 ~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (616)
..|.+.|+++.....+.....+ +...+||||++.+++..
T Consensus 90 G~iilvd~et~~~eivg~vd~G-----I~aaswS~Dee~l~liT 128 (1265)
T KOG1920|consen 90 GDIILVDPETLELEIVGNVDNG-----ISAASWSPDEELLALIT 128 (1265)
T ss_pred CcEEEEcccccceeeeeeccCc-----eEEEeecCCCcEEEEEe
Confidence 5666667777666666444432 67889999999988864
No 264
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=79.66 E-value=78 Score=32.53 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=76.5
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc--eEEEecCCCCCCCCCccccCccCCCCcceeecCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK--LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (616)
.+..++|+|-.+.++...... +.|.++|+... +...... +... ......|+|=+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd------------~~L~iwD~R~~~~~~~~~~~---ah~~---------~vn~~~fnp~~ 284 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDD------------GKLMIWDTRSNTSKPSHSVK---AHSA---------EVNCVAFNPFN 284 (422)
T ss_pred ceehhhccccchhhheeecCC------------CeEEEEEcCCCCCCCccccc---ccCC---------ceeEEEeCCCC
Confidence 566889999877766554432 36888887642 1111110 0000 01125566555
Q ss_pred CceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 254 ~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
...|+-. +....+.+||++.+. ...+.+-.....+..+.|||+...++..+.. ++...+|-++--+
T Consensus 285 ~~ilAT~------------S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~-D~rl~vWDls~ig 350 (422)
T KOG0264|consen 285 EFILATG------------SADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGT-DRRLNVWDLSRIG 350 (422)
T ss_pred CceEEec------------cCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEeccc-CCcEEEEeccccc
Confidence 4322211 222345555552222 1233333444566789999998775554432 3433444443222
Q ss_pred C--------CCCceEEe--ecccccccCCCCCCCeeeCCCCCEEEEEeeec
Q 007140 334 K--------DVAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKIKKE 374 (616)
Q Consensus 334 ~--------~~~~~~l~--~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~~~ 374 (616)
. ++.+.+|| .+.. ..+. .+.|.|.--+++..+.++
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~-~kV~-----DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHT-AKVS-----DFSWNPNEPWTIASVAED 395 (422)
T ss_pred cccChhhhccCCcceeEEecCcc-cccc-----cccCCCCCCeEEEEecCC
Confidence 1 12344443 1111 1112 289999888877776544
No 265
>PRK13615 lipoprotein LpqB; Provisional
Probab=79.46 E-value=66 Score=35.08 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=32.4
Q ss_pred cceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCC
Q 007140 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (616)
Q Consensus 34 ~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg 98 (616)
.++..|+||+.+|++.. ...|++-... +..+.+..-.. +..++|.++|
T Consensus 337 ~s~avS~dg~~~A~v~~----------~~~l~vg~~~-~~~~~~~~~~~------Lt~PS~d~~g 384 (557)
T PRK13615 337 DAATLSADGRQAAVRNA----------SGVWSVGDGD-RDAVLLDTRPG------LVAPSLDAQG 384 (557)
T ss_pred ccceEcCCCceEEEEcC----------CceEEEecCC-CcceeeccCCc------cccCcCcCCC
Confidence 68899999999999842 2367766543 45555542221 5678888887
No 266
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=79.33 E-value=12 Score=38.22 Aligned_cols=47 Identities=11% Similarity=-0.057 Sum_probs=31.7
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
....+|+++||.|+. |+| |. |..-....+.....+|+.++++++.++
T Consensus 85 ~~~~~L~~~G~~V~~~D~~-g~---g~s~~~~~~~d~~~~~~~~~v~~l~~~ 132 (350)
T TIGR01836 85 SLVRGLLERGQDVYLIDWG-YP---DRADRYLTLDDYINGYIDKCVDYICRT 132 (350)
T ss_pred hHHHHHHHCCCeEEEEeCC-CC---CHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999 999 73 322111222223345688889998876
No 267
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=79.28 E-value=22 Score=35.61 Aligned_cols=103 Identities=15% Similarity=0.044 Sum_probs=67.1
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCC--C----CCchHHHHhhC
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG--M----TPTSSLIFLAR 554 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~q~la~~ 554 (616)
..+.+..+. |+..|+..-+.=++..++ |+ +++..+-+ ..|.. + ...+..+.-+.
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~~-RW---iL~s~GNg---------------~~~E~~~~~~~~~~~~~~~ak~~ 170 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKPQ-RW---ILVSNGNG---------------ECYENRAMLDYKDDWIQRFAKEL 170 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCCC-cE---EEEEcCCh---------------HHhhhhhhhccccHHHHHHHHHc
Confidence 777788876 999999988764444432 33 34433211 11111 0 11345567778
Q ss_pred CeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcC-CccCCceEEEe
Q 007140 555 RFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRG-VGLPILYLNTT 608 (616)
Q Consensus 555 Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~-~vD~~ri~~~~ 608 (616)
|-.|+. ||| | .|+.+...+ .+..+.|-.++|+||.++. -+.+++|..-+
T Consensus 171 ~aNvl~fNYp-G-Vg~S~G~~s---~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG 221 (365)
T PF05677_consen 171 GANVLVFNYP-G-VGSSTGPPS---RKDLVKDYQACVRYLRDEEQGPKAKNIILYG 221 (365)
T ss_pred CCcEEEECCC-c-cccCCCCCC---HHHHHHHHHHHHHHHHhcccCCChheEEEee
Confidence 999999 999 7 455544443 3678899999999999864 36888887654
No 268
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=79.18 E-value=4.7 Score=40.98 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=29.5
Q ss_pred hHHHHhhCCeEEEE-CCCCCcccc--CCCccCC---hhHHHHHHHHHHHHHHHHH
Q 007140 547 SSLIFLARRFAVLA-GPSIPIIGE--GDKLPND---RFVEQLVSSAEAAVEEVVR 595 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~GS~Gy--G~~f~~~---~~g~~~~~D~~~~v~~l~~ 595 (616)
+.+.|+++||.|+. |.| |- |. |.....+ .| ..-++|+...++.+.+
T Consensus 66 ~~~~l~~~G~~V~~~D~r-GH-G~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~ 117 (332)
T TIGR01607 66 WIENFNKNGYSVYGLDLQ-GH-GESDGLQNLRGHINCF-DDLVYDVIQYMNRIND 117 (332)
T ss_pred HHHHHHHCCCcEEEeccc-cc-CCCccccccccchhhH-HHHHHHHHHHHHHhhh
Confidence 57899999999999 999 73 32 1111112 22 2345777777777654
No 269
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.92 E-value=55 Score=36.15 Aligned_cols=114 Identities=14% Similarity=0.220 Sum_probs=61.5
Q ss_pred CceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCC--CceEEEecCCCCCCCCCccccCccCCC-Ccceeec
Q 007140 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAEDIPVCYNSVREGM-RSISWRA 251 (616)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~wsp 251 (616)
+.+.++.|||--...+++..+.. -|.+||+. ....++++.. .|. .-..|.|
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG------------~lqlWDlRqp~r~~~k~~AH--------------~GpV~c~nwhP 230 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSG------------YLQLWDLRQPDRCEKKLTAH--------------NGPVLCLNWHP 230 (839)
T ss_pred hhhhceeeccCCCceEEEecCCc------------eEEEeeccCchhHHHHhhcc--------------cCceEEEeecC
Confidence 35678999996555555544433 57788875 2333444331 112 2378999
Q ss_pred CCCceEEEEEeecCCCcccccCCCc-eeEeccCCCCCCCCceEec--cccccccceeecCCCce-EEEeeeccCccEEEE
Q 007140 252 DKPSTLYWVEAQDRGDANVEVSPRD-IIYTQPAEPAEGEKPEILH--KLDLRFRSVSWCDDSLA-LVNETWYKTSQTRTW 327 (616)
Q Consensus 252 dg~~~l~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~--~~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l~ 327 (616)
++. |+.. . .|+ .+-+|+. ++++...+. ..-..+..+.|-|+... |+..+-.. ...++
T Consensus 231 nr~----~lAT-G---------GRDK~vkiWd~---t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~--dtsV~ 291 (839)
T KOG0269|consen 231 NRE----WLAT-G---------GRDKMVKIWDM---TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV--DTSVH 291 (839)
T ss_pred CCc----eeee-c---------CCCccEEEEec---cCCCccceeEEeecceeeeeeeccCccchhhhhhccc--cceEE
Confidence 765 4422 1 122 3445565 434443322 34456788999999765 43332111 12566
Q ss_pred EEeCCC
Q 007140 328 LVCPGS 333 (616)
Q Consensus 328 ~~d~~~ 333 (616)
+.|+..
T Consensus 292 VWDvrR 297 (839)
T KOG0269|consen 292 VWDVRR 297 (839)
T ss_pred EEeecc
Confidence 666654
No 270
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=78.71 E-value=14 Score=35.58 Aligned_cols=54 Identities=24% Similarity=0.391 Sum_probs=34.4
Q ss_pred eEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC--ce---EecccCCCccccccccceEEecCCcEEEEE
Q 007140 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG--EA---KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 36 ~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g--~~---~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
++.++||+.||.+-+ +.|-+...+.. .. -++-.++ +.+...+.||||+..|++.
T Consensus 3 ~~~~~~Gk~lAi~qd-----------~~iEiRsa~Ddf~si~~kcqVpkD~----~PQWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-----------QCIEIRSAKDDFSSIIGKCQVPKDP----NPQWRKLAWSPDCTLLAYA 61 (282)
T ss_pred eeecCCCcEEEEEec-----------cEEEEEeccCCchheeEEEecCCCC----CchheEEEECCCCcEEEEE
Confidence 577999999999853 34444444432 11 1332222 2336689999999999995
No 271
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=78.42 E-value=7.2 Score=38.63 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=37.4
Q ss_pred cEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCCcc--C-ChhH-HHHHHHHHH
Q 007140 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDKLP--N-DRFV-EQLVSSAEA 588 (616)
Q Consensus 514 P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~--~-~~~g-~~~~~D~~~ 588 (616)
|+|+.. ||-|..|..++ .-...|+++||.|+. |.| | ||..=. . .+|- .....|+.+
T Consensus 45 P~illl--------------HGfPe~wyswr-~q~~~la~~~~rviA~Dlr-G---yG~Sd~P~~~~~Yt~~~l~~di~~ 105 (322)
T KOG4178|consen 45 PIVLLL--------------HGFPESWYSWR-HQIPGLASRGYRVIAPDLR-G---YGFSDAPPHISEYTIDELVGDIVA 105 (322)
T ss_pred CEEEEE--------------ccCCccchhhh-hhhhhhhhcceEEEecCCC-C---CCCCCCCCCcceeeHHHHHHHHHH
Confidence 777777 55555553333 223469999999999 999 5 565422 2 3332 234566666
Q ss_pred HHHHHH
Q 007140 589 AVEEVV 594 (616)
Q Consensus 589 ~v~~l~ 594 (616)
-++.|-
T Consensus 106 lld~Lg 111 (322)
T KOG4178|consen 106 LLDHLG 111 (322)
T ss_pred HHHHhc
Confidence 655553
No 272
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.73 E-value=15 Score=42.11 Aligned_cols=116 Identities=17% Similarity=0.265 Sum_probs=61.0
Q ss_pred eEEEEeCCC--CeeecCCCC---ceeeeeECCCCc-EEEEEeccCCCcccccCcccCccEEEEeCC--CceEEEecCCCC
Q 007140 158 QLVLGSLDG--TAKDFGTPA---VYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPP 229 (616)
Q Consensus 158 ~l~~~d~~g--~~~~l~~~~---~~~~~~~SpDg~-~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~ 229 (616)
+..++|+.. .+..+.... ..+.++|.||.. +|++.+.+.. ..-|.+||+. +...+.++.
T Consensus 185 ~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~----------~PviqlWDlR~assP~k~~~~--- 251 (1049)
T KOG0307|consen 185 RAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS----------APVIQLWDLRFASSPLKILEG--- 251 (1049)
T ss_pred CceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC----------CceeEeecccccCCchhhhcc---
Confidence 444556633 233443322 467899999975 6665554321 2356677754 333333322
Q ss_pred CCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCce-EeccccccccceeecC
Q 007140 230 AEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKLDLRFRSVSWCD 308 (616)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~~~~~~~~~~~wsp 308 (616)
...|.-.+.|.+.... ++.-. .-...+++|+. .+|+.- .+......+..+.|+|
T Consensus 252 ----------H~~GilslsWc~~D~~-lllSs-----------gkD~~ii~wN~---~tgEvl~~~p~~~nW~fdv~w~p 306 (1049)
T KOG0307|consen 252 ----------HQRGILSLSWCPQDPR-LLLSS-----------GKDNRIICWNP---NTGEVLGELPAQGNWCFDVQWCP 306 (1049)
T ss_pred ----------cccceeeeccCCCCch-hhhcc-----------cCCCCeeEecC---CCceEeeecCCCCcceeeeeecC
Confidence 1234446789887753 22211 11235677776 544433 2333344567889998
Q ss_pred CCc
Q 007140 309 DSL 311 (616)
Q Consensus 309 Dg~ 311 (616)
-.-
T Consensus 307 r~P 309 (1049)
T KOG0307|consen 307 RNP 309 (1049)
T ss_pred CCc
Confidence 644
No 273
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=77.67 E-value=18 Score=38.56 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=60.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~ 111 (616)
.+....|.-.|.+||-+... .++..+.+..+.......-+.-..+ .+....|.|-.-.|++.
T Consensus 523 ~i~~vtWHrkGDYlatV~~~-------~~~~~VliHQLSK~~sQ~PF~kskG----~vq~v~FHPs~p~lfVa------- 584 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPD-------SGNKSVLIHQLSKRKSQSPFRKSKG----LVQRVKFHPSKPYLFVA------- 584 (733)
T ss_pred ccceeeeecCCceEEEeccC-------CCcceEEEEecccccccCchhhcCC----ceeEEEecCCCceEEEE-------
Confidence 47788888888888877643 4567777777754332211111111 13344455544443332
Q ss_pred CCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCC-eeecC-CCCceeeeeECCCCcE
Q 007140 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQKY 188 (616)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~-~~~l~-~~~~~~~~~~SpDg~~ 188 (616)
.+..+-++|+ .++ ++.|. .-..++.++.+|.|..
T Consensus 585 -------------------------------------------Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 585 -------------------------------------------TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred -------------------------------------------eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 1234556677 333 33443 3346788999999999
Q ss_pred EEEEeccC
Q 007140 189 VLITSMHR 196 (616)
Q Consensus 189 i~~~~~~~ 196 (616)
|++.+..+
T Consensus 622 li~gs~d~ 629 (733)
T KOG0650|consen 622 LILGSYDK 629 (733)
T ss_pred EEEecCCC
Confidence 99887643
No 274
>PRK13614 lipoprotein LpqB; Provisional
Probab=77.07 E-value=1.2e+02 Score=33.26 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=33.6
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg 98 (616)
....+..|+||+.+|++.. ....||+... ++..+.+..-.. +..++|.++|
T Consensus 344 ~~~s~avS~~g~~~A~~~~---------~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d~~g 394 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---------SRTTLYTVSP-GQPARALTSGST------LTRPSFSPQD 394 (573)
T ss_pred cccceeecCCCceEEEecC---------CCcEEEEecC-CCcceeeecCCC------ccCCcccCCC
Confidence 4568899999999999842 2357887665 445555432221 4567777776
No 275
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=76.98 E-value=65 Score=31.30 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=35.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCC--CceeEEEEECCCCc-----eEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSS--CKLRVWIADAETGE-----AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~--~~~~l~v~~~~~g~-----~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+-.+.=||-.++|.-+.-.+..+ .. ..-.||.++-.-+. ...+...+...+ ..+..+.|-|++..|+.+
T Consensus 65 Evw~las~P~d~~ilaT~yn~~s~--s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteav-g~i~cvew~Pns~klasm 141 (370)
T KOG1007|consen 65 EVWDLASSPFDQRILATVYNDTSD--SGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAV-GKINCVEWEPNSDKLASM 141 (370)
T ss_pred ceehhhcCCCCCceEEEEEeccCC--CcceeeEEEEecccccCccccchhhHhhcCCHHHh-CceeeEEEcCCCCeeEEe
Confidence 466777788777666554432100 01 12346655433333 112211111110 124578999999988886
No 276
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=76.24 E-value=3.8 Score=39.58 Aligned_cols=26 Identities=46% Similarity=0.786 Sum_probs=21.8
Q ss_pred CcEEEEEEEcCCCCCCCCCCCCcEEEec
Q 007140 492 GVPLTATLYLPPGYDQSKDGPLPCLFWA 519 (616)
Q Consensus 492 G~~l~g~l~~P~~~~~~kk~p~P~vv~~ 519 (616)
|.+..-+||+|++|++.++| |||++.
T Consensus 5 g~~~~~~VylP~~y~~~~~~--Pvlyll 30 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPY--PVLYLL 30 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTE--EEEEEE
T ss_pred CCeEEEEEEECCCCCCCCCC--EEEEEc
Confidence 66788899999999776666 888888
No 277
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=74.55 E-value=1.1e+02 Score=31.56 Aligned_cols=53 Identities=21% Similarity=0.511 Sum_probs=31.4
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (616)
.++..+|.||| ++|..-. + ...+-+||+.... .++.+|..+. | ...+.++.+|
T Consensus 349 ~~ts~~fHpDg--Lifgtgt-~----------d~~vkiwdlks~~--~~a~Fpght~-~---------vk~i~FsENG 401 (506)
T KOG0289|consen 349 EYTSAAFHPDG--LIFGTGT-P----------DGVVKIWDLKSQT--NVAKFPGHTG-P---------VKAISFSENG 401 (506)
T ss_pred eeEEeeEcCCc--eEEeccC-C----------CceEEEEEcCCcc--ccccCCCCCC-c---------eeEEEeccCc
Confidence 46789999999 4444321 1 2367888988664 4444443211 1 2457777666
No 278
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=73.45 E-value=14 Score=35.91 Aligned_cols=60 Identities=15% Similarity=0.342 Sum_probs=36.0
Q ss_pred cccceeecCC-CceEEEeeeccCccEEEEEEeCCCCCCCceEE--eecccccccCCCCCCCeeeCCCCCEEEEEe
Q 007140 300 RFRSVSWCDD-SLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (616)
Q Consensus 300 ~~~~~~wspD-g~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~ 371 (616)
.++.+.|||. ...++..+|. +..++|.+...+. ..++.. .+..+-+ .+|+.||..++...
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD--~tVR~wevq~~g~-~~~ka~~~~~~PvL~---------v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWD--GTVRIWEVQNSGQ-LVPKAQQSHDGPVLD---------VCWSDDGSKVFSGG 91 (347)
T ss_pred chheeEeccccCceEEecccC--CceEEEEEecCCc-ccchhhhccCCCeEE---------EEEccCCceEEeec
Confidence 3567899994 3345566664 5679999877531 122221 1222222 89999998776554
No 279
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.40 E-value=87 Score=29.92 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=45.5
Q ss_pred eeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccc
Q 007140 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~ 85 (616)
-|||+++.+ . +..+....+...-....++||+.-..++++... ++..+|| |+ +..+.+|...++-
T Consensus 39 ~L~ile~~~--~-~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G-------DGSLrl~--d~-~~~s~Pi~~~kEH-- 103 (311)
T KOG0277|consen 39 RLFILEVTD--P-KGIQECQSYDTEDGLFDVAWSENHENQVIAASG-------DGSLRLF--DL-TMPSKPIHKFKEH-- 103 (311)
T ss_pred eEEEEecCC--C-CCeEEEEeeecccceeEeeecCCCcceEEEEec-------CceEEEe--cc-CCCCcchhHHHhh--
Confidence 488998853 1 223333323222257899999999999998763 4555555 53 2233343322221
Q ss_pred cccccceEEecCCcEEEE
Q 007140 86 NAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 86 ~~~~~~~~wspdg~~l~~ 103 (616)
..++-++.|.+--+..+.
T Consensus 104 ~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFL 121 (311)
T ss_pred hhheEEeccccccceeEE
Confidence 112456778875554444
No 280
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.61 E-value=81 Score=32.46 Aligned_cols=37 Identities=8% Similarity=-0.104 Sum_probs=24.2
Q ss_pred cceEEEEeCCC-CeeecCCCC-ceeeeeECCCCcEEEEEe
Q 007140 156 TAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYVLITS 193 (616)
Q Consensus 156 ~~~l~~~d~~g-~~~~l~~~~-~~~~~~~SpDg~~i~~~~ 193 (616)
...+++++.++ +.+.+..+- ....++|+|+|+. +++.
T Consensus 163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~td 201 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFCD 201 (367)
T ss_pred CceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEEc
Confidence 36799999965 555555432 2347899999865 4443
No 281
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.30 E-value=52 Score=30.99 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=32.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLL 101 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l 101 (616)
.+.....|-|..+++-. .+..++.+||+++|+..+-..... ++++...|..+...|
T Consensus 61 EVlD~~~s~Dnskf~s~----------GgDk~v~vwDV~TGkv~Rr~rgH~----aqVNtV~fNeesSVv 116 (307)
T KOG0316|consen 61 EVLDAALSSDNSKFASC----------GGDKAVQVWDVNTGKVDRRFRGHL----AQVNTVRFNEESSVV 116 (307)
T ss_pred eeeeccccccccccccC----------CCCceEEEEEcccCeeeeeccccc----ceeeEEEecCcceEE
Confidence 35556666666665543 245688888999998543322222 225566676555433
No 282
>PRK05855 short chain dehydrogenase; Validated
Probab=71.23 E-value=10 Score=41.80 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=41.0
Q ss_pred ECCCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCc
Q 007140 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 488 ~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS 566 (616)
...||.+|+.+.+-+ + + . |.||++| |.+.....+. ...+.| ++||-|+. |.| |
T Consensus 8 ~~~~g~~l~~~~~g~----~-~-~--~~ivllH--------------G~~~~~~~w~-~~~~~L-~~~~~Vi~~D~~-G- 61 (582)
T PRK05855 8 VSSDGVRLAVYEWGD----P-D-R--PTVVLVH--------------GYPDNHEVWD-GVAPLL-ADRFRVVAYDVR-G- 61 (582)
T ss_pred EeeCCEEEEEEEcCC----C-C-C--CeEEEEc--------------CCCchHHHHH-HHHHHh-hcceEEEEecCC-C-
Confidence 456899998776522 1 1 2 5677662 2211111112 334555 78999999 999 6
Q ss_pred cccCCCccC---ChhH-HHHHHHHHHHHHHH
Q 007140 567 IGEGDKLPN---DRFV-EQLVSSAEAAVEEV 593 (616)
Q Consensus 567 ~GyG~~f~~---~~~g-~~~~~D~~~~v~~l 593 (616)
+|..-.. ..+. ....+|+.+.++++
T Consensus 62 --~G~S~~~~~~~~~~~~~~a~dl~~~i~~l 90 (582)
T PRK05855 62 --AGRSSAPKRTAAYTLARLADDFAAVIDAV 90 (582)
T ss_pred --CCCCCCCCcccccCHHHHHHHHHHHHHHh
Confidence 5554322 1111 23345555555543
No 283
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=71.12 E-value=23 Score=37.21 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=38.6
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC-ceEecccCCCccccccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g-~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
.+...+|.|+.+.|.|+. +.++++-+++-. +..+.-.+.. .+-.+.|++.+..|+.
T Consensus 147 ~v~c~~W~p~S~~vl~c~-----------g~h~~IKpL~~n~k~i~WkAHDG-----iiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQ-----------GGHISIKPLAANSKIIRWRAHDG-----LVLSLSWSTQSNIIAS 203 (737)
T ss_pred eeEEEEECCCCCceEEec-----------CCeEEEeecccccceeEEeccCc-----EEEEeecCccccceee
Confidence 477899999999999985 368888888754 3333322222 1457889888876654
No 284
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=70.75 E-value=1.3e+02 Score=30.71 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=34.0
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE-EEecCCCCCCCCCccccCccCCCCcceeecCCC
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV-RELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (616)
.+.-+.|.|-..-+++++.. ...+.+||+.+++. -.|. .| + -..+++|+.||.
T Consensus 133 rVg~V~wHPtA~NVLlsag~------------Dn~v~iWnv~tgeali~l~-hp---d----------~i~S~sfn~dGs 186 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAGS------------DNTVSIWNVGTGEALITLD-HP---D----------MVYSMSFNRDGS 186 (472)
T ss_pred eEEEEeecccchhhHhhccC------------CceEEEEeccCCceeeecC-CC---C----------eEEEEEeccCCc
Confidence 45678999987767666532 23688999986653 2232 11 0 134688999987
Q ss_pred c
Q 007140 255 S 255 (616)
Q Consensus 255 ~ 255 (616)
.
T Consensus 187 ~ 187 (472)
T KOG0303|consen 187 L 187 (472)
T ss_pred e
Confidence 3
No 285
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=70.52 E-value=1.2e+02 Score=30.09 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.5
Q ss_pred ceeeeeECCCCcEEEEEecc
Q 007140 176 VYTAVEPSPDQKYVLITSMH 195 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~ 195 (616)
.+-.++||||+++|++.++.
T Consensus 228 ~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 228 DIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred eEEEEEeCCCccEEEEEcCC
Confidence 34578999999999999754
No 286
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=70.51 E-value=94 Score=33.75 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=24.8
Q ss_pred EEEEeC-CCCeeecCCC---CceeeeeECCCCcEEEEEe
Q 007140 159 LVLGSL-DGTAKDFGTP---AVYTAVEPSPDQKYVLITS 193 (616)
Q Consensus 159 l~~~d~-~g~~~~l~~~---~~~~~~~~SpDg~~i~~~~ 193 (616)
++..+. .++++++... ...+.+.||||++.|++.-
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 555666 5677775432 2567899999999987764
No 287
>PRK13613 lipoprotein LpqB; Provisional
Probab=70.00 E-value=70 Score=35.32 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=40.9
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECC---CCceEecccCCCccc-cccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDICL-NAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~---~g~~~~lt~~~~~~~-~~~~~~~~wspdg~~l~~ 103 (616)
.+..++.|+||-|+|++... .+..+|++--+. .|+ +.|+..-.... ......+.|..++..++.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~-------~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vl 523 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEK-------DGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDMSWAGDSQLVVL 523 (599)
T ss_pred EeEEEEECCCccEEEEEEec-------CCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCccceeEEcCCCEEEEE
Confidence 58899999999999999864 345667655442 344 55554311100 112458899998885444
No 288
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=69.92 E-value=70 Score=32.28 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=48.8
Q ss_pred ceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc--eEecccCCC
Q 007140 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPD 82 (616)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~--~~~lt~~~~ 82 (616)
.+||+-......=.-..++++.... .+..++|||.-+-+.+..+. ...|-++|+..+. +-..++..
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~--SVEDLqWSptE~~vfaScS~---------DgsIrIWDiRs~~~~~~~~~kAh- 301 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTK--SVEDLQWSPTEDGVFASCSC---------DGSIRIWDIRSGPKKAAVSTKAH- 301 (440)
T ss_pred cceEeeeeccCceeecCcccccccc--chhhhccCCccCceEEeeec---------CceEEEEEecCCCccceeEeecc-
Confidence 3566666654111223445553222 57899999999888887765 2456666887762 22333221
Q ss_pred ccccccccceEEecCCcEEEE
Q 007140 83 ICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 83 ~~~~~~~~~~~wspdg~~l~~ 103 (616)
+..++-++|+-+-..|++
T Consensus 302 ---~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 302 ---NSDVNVISWNRREPLLAS 319 (440)
T ss_pred ---CCceeeEEccCCcceeee
Confidence 123667889876665555
No 289
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=68.44 E-value=1.3e+02 Score=29.71 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=35.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~ 100 (616)
.+..++|.|.|..|+.-. ...-+.++|+++-+...-.+ ++..-.+.+.....|+.|+.
T Consensus 218 ~vrsiSfHPsGefllvgT----------dHp~~rlYdv~T~Qcfvsan-Pd~qht~ai~~V~Ys~t~~l 275 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGT----------DHPTLRLYDVNTYQCFVSAN-PDDQHTGAITQVRYSSTGSL 275 (430)
T ss_pred eeeeEeecCCCceEEEec----------CCCceeEEeccceeEeeecC-cccccccceeEEEecCCccE
Confidence 477889999999877643 24677888988765433222 11111122456777777773
No 290
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=68.18 E-value=1.2e+02 Score=29.75 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=37.4
Q ss_pred CceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce--EecccCCCccccccccceEEecC
Q 007140 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNN 97 (616)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~--~~lt~~~~~~~~~~~~~~~wspd 97 (616)
+-..|+..|++ .++.+.|||.-..++...+ .++...+|-+... |.. +..-... ..+-...||.|
T Consensus 18 kd~ev~~pP~D-sIS~l~FSP~~~~~~~A~S-------WD~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsdd 83 (347)
T KOG0647|consen 18 KDYEVPNPPED-SISALAFSPQADNLLAAGS-------WDGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDD 83 (347)
T ss_pred cceecCCCccc-chheeEeccccCceEEecc-------cCCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccC
Confidence 33455544554 6899999994333332222 2445566655543 332 2221111 11457899999
Q ss_pred CcEEEE
Q 007140 98 STLLIF 103 (616)
Q Consensus 98 g~~l~~ 103 (616)
|..++.
T Consensus 84 gskVf~ 89 (347)
T KOG0647|consen 84 GSKVFS 89 (347)
T ss_pred CceEEe
Confidence 976544
No 291
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=67.52 E-value=1.9e+02 Score=31.33 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=34.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~ 100 (616)
.+..++..|-|.+||-=+. ++.. -+|.++||-+.+.+...+ .+..++|+|.+..
T Consensus 402 ~Vr~iSvdp~G~wlasGsd--------DGtv--riWEi~TgRcvr~~~~d~-----~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD--------DGTV--RIWEIATGRCVRTVQFDS-----EIRSVAWNPLSDL 455 (733)
T ss_pred eEEEEEecCCcceeeecCC--------CCcE--EEEEeecceEEEEEeecc-----eeEEEEecCCCCc
Confidence 3567788888887765432 4444 445777886544443333 2678999998884
No 292
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=67.41 E-value=4.5 Score=32.92 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=13.5
Q ss_pred eEEccCCCeEEEEEe
Q 007140 36 VSWSPDGKRIAFSVR 50 (616)
Q Consensus 36 ~~~SPDG~~iaf~~~ 50 (616)
=.|||||++|.|+.+
T Consensus 73 HvfSpDG~~lSFTYN 87 (122)
T PF12566_consen 73 HVFSPDGSWLSFTYN 87 (122)
T ss_pred eEECCCCCEEEEEec
Confidence 389999999999985
No 293
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=66.46 E-value=1.7e+02 Score=30.38 Aligned_cols=205 Identities=13% Similarity=0.037 Sum_probs=106.4
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCC
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDP 112 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~ 112 (616)
......+++|+++.- ... ..+.+.++|.++.+...-.... .....+.++++++.++..-...
T Consensus 76 p~~i~v~~~~~~vyv-~~~--------~~~~v~vid~~~~~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~---- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYV-TTG--------DSNTVSVIDTATNTVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGN---- 137 (381)
T ss_pred ccceeeCCCCCeEEE-ecC--------CCCeEEEEcCcccceeeEeeec-----cCCceEEECCCCCEEEEEeccc----
Confidence 456788888887444 432 2467888886554322221111 1245788999999887751100
Q ss_pred CCCcccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeee-cCCCCceeeeeECCCCcEEE
Q 007140 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYVL 190 (616)
Q Consensus 113 ~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~-l~~~~~~~~~~~SpDg~~i~ 190 (616)
....+.++|. +++... +..+..-..++++|+|++++
T Consensus 138 ------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vy 175 (381)
T COG3391 138 ------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVY 175 (381)
T ss_pred ------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEE
Confidence 1245666666 343222 22221225789999999998
Q ss_pred EEeccCCCcccccCcccCccEEEEeCCCceEEEecCCCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCccc
Q 007140 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANV 270 (616)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~ 270 (616)
+.... ...+.++|..+..... ..-. .......+...+.++|||.. + |+......
T Consensus 176 v~~~~------------~~~v~vi~~~~~~v~~-~~~~-------~~~~~~~~P~~i~v~~~g~~-~-yV~~~~~~---- 229 (381)
T COG3391 176 VTNSD------------DNTVSVIDTSGNSVVR-GSVG-------SLVGVGTGPAGIAVDPDGNR-V-YVANDGSG---- 229 (381)
T ss_pred EEecC------------CCeEEEEeCCCcceec-cccc-------cccccCCCCceEEECCCCCE-E-EEEeccCC----
Confidence 88522 2467888876655443 1100 00001122345889999983 3 33211110
Q ss_pred ccCCCceeEeccCCCCCCCCceEe--ccccccccceeecCCCceEEEeeeccCccEEEEEEeCCC
Q 007140 271 EVSPRDIIYTQPAEPAEGEKPEIL--HKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~g~~~~l--~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
...+...+. ..+..... ............+|+|..++..... ...++.+|..+
T Consensus 230 ----~~~v~~id~---~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~ 284 (381)
T COG3391 230 ----SNNVLKIDT---ATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ---GGTVSVIDGAT 284 (381)
T ss_pred ----CceEEEEeC---CCceEEEeccccccCCCCceeECCCCCEEEEEecC---CCeEEEEeCCC
Confidence 123333344 32222222 1111133456788999875544221 23688888776
No 294
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.19 E-value=1.2e+02 Score=28.68 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=31.9
Q ss_pred ceEEEEeC-CCC-eeecC-CCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce
Q 007140 157 AQLVLGSL-DGT-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (616)
Q Consensus 157 ~~l~~~d~-~g~-~~~l~-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (616)
..++++|+ +|+ .+++. ....+..+.|..+..-|+-.+. ...+.+||..+..
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sgsf-------------D~s~r~wDCRS~s 134 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSF-------------DSSVRLWDCRSRS 134 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccc-------------cceeEEEEcccCC
Confidence 46788898 774 55553 4446778899876554443332 3467788876543
No 295
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=65.63 E-value=32 Score=37.35 Aligned_cols=57 Identities=11% Similarity=-0.033 Sum_probs=36.2
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
....+|+++||-|+. |.| | .|.+-....+.....+++.++++++.+. .+.++|.+.+
T Consensus 211 Slv~~L~~qGf~V~~iDwr-g---pg~s~~~~~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG 268 (532)
T TIGR01838 211 SLVRWLVEQGHTVFVISWR-N---PDASQADKTFDDYIRDGVIAALEVVEAI--TGEKQVNCVG 268 (532)
T ss_pred HHHHHHHHCCcEEEEEECC-C---CCcccccCChhhhHHHHHHHHHHHHHHh--cCCCCeEEEE
Confidence 357889999999999 999 6 3433222122333456788888888754 2345555544
No 296
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=65.40 E-value=14 Score=39.90 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=35.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+..+.|||||++|+-+++ +..-.||-.--.-.-.......+.- ..++=...|+||++.++..
T Consensus 574 TVT~l~FSpdg~~LLsvsR--------DRt~sl~~~~~~~~~e~~fa~~k~H--tRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSR--------DRTVSLYEVQEDIKDEFRFACLKAH--TRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEEECCCCcEEEEeec--------CceEEeeeeecccchhhhhcccccc--ceEEEEcccCcccceeEEe
Confidence 4789999999999998774 4456666431111111221111110 0112267899999984443
No 297
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=64.71 E-value=34 Score=34.48 Aligned_cols=88 Identities=20% Similarity=0.207 Sum_probs=55.5
Q ss_pred EEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE--CCCCCccccCCCccC
Q 007140 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA--GPSIPIIGEGDKLPN 575 (616)
Q Consensus 498 ~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~--n~R~GS~GyG~~f~~ 575 (616)
.+++|...++.+| |+.|+.-+ .|. ++|.....+..--|+.+|++-+. |+= ||..=+.
T Consensus 80 ~~~~P~~~~~~~r---p~~IhLag------------TGD-h~f~rR~~l~a~pLl~~gi~s~~le~Py-----yg~RkP~ 138 (348)
T PF09752_consen 80 QLLLPKRWDSPYR---PVCIHLAG------------TGD-HGFWRRRRLMARPLLKEGIASLILENPY-----YGQRKPK 138 (348)
T ss_pred EEEECCccccCCC---ceEEEecC------------CCc-cchhhhhhhhhhHHHHcCcceEEEeccc-----ccccChh
Confidence 4677988744333 88888711 111 34432222323446666988776 665 5554332
Q ss_pred -------------ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEee
Q 007140 576 -------------DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTTA 609 (616)
Q Consensus 576 -------------~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~~ 609 (616)
--+|...+.++...++||.++|+- ++|||+-
T Consensus 139 ~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~ 182 (348)
T PF09752_consen 139 DQRRSSLRNVSDLFVMGRATILESRALLHWLEREGYG---PLGLTGI 182 (348)
T ss_pred HhhcccccchhHHHHHHhHHHHHHHHHHHHHHhcCCC---ceEEEEe
Confidence 123566788999999999999884 9999983
No 298
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.76 E-value=25 Score=34.48 Aligned_cols=64 Identities=19% Similarity=0.108 Sum_probs=46.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEec
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~ 106 (616)
.+.-.+++-+|..||-.+. +++-|.++|..+|+..+=. ..+.-.+.+-.+.||||+.+|+..+.
T Consensus 183 ~Iacv~Ln~~Gt~vATaSt---------kGTLIRIFdt~~g~~l~E~--RRG~d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATAST---------KGTLIRIFDTEDGTLLQEL--RRGVDRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred ceeEEEEcCCccEEEEecc---------CcEEEEEEEcCCCcEeeee--ecCCchheEEEEEeCCCccEEEEEcC
Confidence 4778899999999998764 4688999999998754332 11111223457899999999998743
No 299
>PRK13615 lipoprotein LpqB; Provisional
Probab=63.58 E-value=89 Score=34.10 Aligned_cols=65 Identities=12% Similarity=0.236 Sum_probs=41.7
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEEC--CCCceEec-ccCCCccc-cccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA--ETGEAKPL-FESPDICL-NAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~--~~g~~~~l-t~~~~~~~-~~~~~~~~wspdg~~l~~ 103 (616)
.+..++.|+||.|+|.+... .+..+|++.-+ .++.++.| +..-.... ......+.|..+++.++.
T Consensus 418 ~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl 486 (557)
T PRK13615 418 RVVSLEVARDGARVLVQLET-------GAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATL 486 (557)
T ss_pred eeEEEEeCCCccEEEEEEec-------CCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEE
Confidence 58899999999999999864 34566776433 34556667 43311110 112458899998885444
No 300
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=62.92 E-value=5.8 Score=41.02 Aligned_cols=21 Identities=10% Similarity=-0.096 Sum_probs=12.9
Q ss_pred chHHHHhhCCeEEEE-CCCCCc
Q 007140 546 TSSLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS 566 (616)
....-||++||+|+. +.|=||
T Consensus 118 ~~~~eLAS~GyVV~aieHrDgS 139 (379)
T PF03403_consen 118 AICGELASHGYVVAAIEHRDGS 139 (379)
T ss_dssp HHHHHHHHTT-EEEEE---SS-
T ss_pred HHHHHHHhCCeEEEEeccCCCc
Confidence 445779999999999 999554
No 301
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=62.28 E-value=8.6 Score=35.85 Aligned_cols=58 Identities=9% Similarity=-0.067 Sum_probs=39.7
Q ss_pred hHHHHhhCCeEEEE-CCCCC---ccc-cCCCccCChh-----HHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 547 SSLIFLARRFAVLA-GPSIP---IIG-EGDKLPNDRF-----VEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~G---S~G-yG~~f~~~~~-----g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
.+-.+|..||.|+. |+=.| |.+ .=.++ ..| -.....|+.+.++||..+| |..+|||++
T Consensus 59 ~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~--~~w~~~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~G 126 (242)
T KOG3043|consen 59 GADKVALNGYTVLVPDFFRGDPWSPSLQKSER--PEWMKGHSPPKIWKDITAVVKWLKNHG--DSKKIGVVG 126 (242)
T ss_pred HHHHHhcCCcEEEcchhhcCCCCCCCCChhhh--HHHHhcCCcccchhHHHHHHHHHHHcC--CcceeeEEE
Confidence 35578999999999 76525 322 11111 223 2346689999999999777 679999997
No 302
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=62.15 E-value=49 Score=32.97 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 550 IFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 550 ~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
++..++|.|+. |.| | +|..-..........+|+.+.+..+++.
T Consensus 48 ~~~~~~~~vi~~D~~-G---~G~S~~~~~~~~~~~~~~~~dl~~l~~~ 91 (306)
T TIGR01249 48 FFDPETYRIVLFDQR-G---CGKSTPHACLEENTTWDLVADIEKLREK 91 (306)
T ss_pred ccCccCCEEEEECCC-C---CCCCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 45568999999 999 6 5654332111112244566666666654
No 303
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=62.07 E-value=50 Score=34.12 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=56.5
Q ss_pred ceeEEEEECCCCcEEEEEEEcCCCC-CCCCCCCCcEEEecccCcccccccCCcccCCC-CccCCCCCchHHHHhhCCeEE
Q 007140 481 QKEMIKYQRKDGVPLTATLYLPPGY-DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-NEFSGMTPTSSLIFLARRFAV 558 (616)
Q Consensus 481 ~~e~i~~~~~DG~~l~g~l~~P~~~-~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~la~~Gy~V 558 (616)
.-|.+++ .||-++---++.+.+- ...+..-.|+||...+- .++. ..|. . +.......+||-|
T Consensus 94 ~Reii~~--~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGl-----------tg~S~~~YV--r-~lv~~a~~~G~r~ 157 (409)
T KOG1838|consen 94 TREIIKT--SDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGL-----------TGGSHESYV--R-HLVHEAQRKGYRV 157 (409)
T ss_pred eeEEEEe--CCCCEEEEeeccCcccccCCCCCCCcEEEEecCC-----------CCCChhHHH--H-HHHHHHHhCCcEE
Confidence 5555555 4665555445545443 21112234877777221 1111 1221 1 4566788899999
Q ss_pred EE-CCCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHc-CCc
Q 007140 559 LA-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRR-GVG 599 (616)
Q Consensus 559 l~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~-~~v 599 (616)
+. |.| |= -|.+-.. +-|--...+|+.++|+++.++ |..
T Consensus 158 VVfN~R-G~--~g~~LtTpr~f~ag~t~Dl~~~v~~i~~~~P~a 198 (409)
T KOG1838|consen 158 VVFNHR-GL--GGSKLTTPRLFTAGWTEDLREVVNHIKKRYPQA 198 (409)
T ss_pred EEECCC-CC--CCCccCCCceeecCCHHHHHHHHHHHHHhCCCC
Confidence 99 999 72 2233222 222233579999999999987 654
No 304
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=61.45 E-value=1.1e+02 Score=31.25 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=70.8
Q ss_pred cceeecCCC-ceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccc--cccCCCCCCCeeeCCCCCEEEEEeeecCCcc
Q 007140 302 RSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE--NVYSDPGSPMMTRTSTGTNVIAKIKKENDEQ 378 (616)
Q Consensus 302 ~~~~wspDg-~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~--~~~~~~g~~~~~~s~dgk~l~~~~~~~~~~~ 378 (616)
-.++|...| ..++++. + ..|+.++.+++ ..+.+.+..-. -.+.+ .+..+++| .|||......-..
T Consensus 118 LGl~f~~~ggdL~VaDA-Y----lGL~~V~p~g~--~a~~l~~~~~G~~~kf~N----~ldI~~~g-~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 118 LGIRFDKKGGDLYVADA-Y----LGLLKVGPEGG--LAELLADEAEGKPFKFLN----DLDIDPEG-VVYFTDSSSKYDR 185 (376)
T ss_pred ceEEeccCCCeEEEEec-c----eeeEEECCCCC--cceeccccccCeeeeecC----ceeEcCCC-eEEEeccccccch
Confidence 346677665 4455554 2 37999999884 33444221100 00100 14555543 4566543221111
Q ss_pred cEEEEEecCCCCCCCcceeEeeecCCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeecCCCCceEEEEe
Q 007140 379 IYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILS 458 (616)
Q Consensus 379 ~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~ 458 (616)
..+.+..-. .+...| +.++|..+.+.+.|.+.- .. .++.++|+|++.+++...+..+--.+|+-.
T Consensus 186 rd~~~a~l~-g~~~GR--l~~YD~~tK~~~VLld~L-----~F-------~NGlaLS~d~sfvl~~Et~~~ri~rywi~g 250 (376)
T KOG1520|consen 186 RDFVFAALE-GDPTGR--LFRYDPSTKVTKVLLDGL-----YF-------PNGLALSPDGSFVLVAETTTARIKRYWIKG 250 (376)
T ss_pred hheEEeeec-CCCccc--eEEecCcccchhhhhhcc-----cc-------cccccCCCCCCEEEEEeeccceeeeeEecC
Confidence 112222111 112222 557888777776664322 11 124578999998888887776777777776
Q ss_pred CCCCceee
Q 007140 459 WPLKKSSQ 466 (616)
Q Consensus 459 ~~~~~~~~ 466 (616)
...|+.+.
T Consensus 251 ~k~gt~Ev 258 (376)
T KOG1520|consen 251 PKAGTSEV 258 (376)
T ss_pred CccCchhh
Confidence 55554433
No 305
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=61.12 E-value=20 Score=34.40 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=44.0
Q ss_pred EEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE-CCCCCccccCCC
Q 007140 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA-GPSIPIIGEGDK 572 (616)
Q Consensus 494 ~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~-n~R~GS~GyG~~ 572 (616)
..+..++.|..-. .| |+|++. ||- .-+++++--..+..|+.||+|+. +-- .. .+
T Consensus 32 PkpLlI~tP~~~G---~y--PVilF~--------------HG~-~l~ns~Ys~lL~HIASHGfIVVAPQl~-~~--~~-- 86 (307)
T PF07224_consen 32 PKPLLIVTPSEAG---TY--PVILFL--------------HGF-NLYNSFYSQLLAHIASHGFIVVAPQLY-TL--FP-- 86 (307)
T ss_pred CCCeEEecCCcCC---Cc--cEEEEe--------------ech-hhhhHHHHHHHHHHhhcCeEEEechhh-cc--cC--
Confidence 3455677776533 37 888887 221 11111111235678999999999 444 22 22
Q ss_pred ccCChhHHHHHHHHHHHHHHHHH
Q 007140 573 LPNDRFVEQLVSSAEAAVEEVVR 595 (616)
Q Consensus 573 f~~~~~g~~~~~D~~~~v~~l~~ 595 (616)
+. |..+.++..+.++||-+
T Consensus 87 -p~---~~~Ei~~aa~V~~WL~~ 105 (307)
T PF07224_consen 87 -PD---GQDEIKSAASVINWLPE 105 (307)
T ss_pred -CC---chHHHHHHHHHHHHHHh
Confidence 11 45688999999999864
No 306
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.70 E-value=1.1e+02 Score=30.13 Aligned_cols=36 Identities=22% Similarity=0.127 Sum_probs=20.5
Q ss_pred eEEEEeC-CCC-eeecCCCCceeeeeECCCCcEEEEEe
Q 007140 158 QLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITS 193 (616)
Q Consensus 158 ~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~i~~~~ 193 (616)
.|-.+|| +|. ...+.-......+.|+|.|.+.++..
T Consensus 150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred eeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 3445666 563 22222122234589999999777664
No 307
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=60.45 E-value=1e+02 Score=28.01 Aligned_cols=68 Identities=15% Similarity=0.138 Sum_probs=43.0
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCC---cccceEEccCCCeEEEEEee-ccccccCCCceeEEEEECCCCceEeccc
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGA---KINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFE 79 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~---~~~~~~~SPDG~~iaf~~~~-~~~~~~~~~~~~l~v~~~~~g~~~~lt~ 79 (616)
+..|||+++.. ++-.+|. +.... ..-...|--|-..+..+... +.- ..+.+||++++.+|+...|+.
T Consensus 87 iGkIYIkn~~~----~~~~~L~-i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTv----S~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 87 IGKIYIKNLNN----NNWWSLQ-IDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTV----SKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ceeEEEEecCC----CceEEEE-ecCcccccCCceeEEecCCcEEEEEccccceE----ccCCeEEEEEccCCceeEeee
Confidence 46799999875 6666664 22221 12255676666654444322 111 346899999999999999875
Q ss_pred C
Q 007140 80 S 80 (616)
Q Consensus 80 ~ 80 (616)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 4
No 308
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=60.43 E-value=21 Score=33.40 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=27.5
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHH-HHHHHHcCCccCCceEE
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAA-VEEVVRRGVGLPILYLN 606 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~-v~~l~~~~~vD~~ri~~ 606 (616)
...|+ +||.|+. |.| | +|..-.........+++++.. ++.+++. .+.+++.+
T Consensus 21 ~~~L~-~~~~v~~~d~~-g---~G~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 74 (251)
T TIGR03695 21 IELLG-PHFRCLAIDLP-G---HGSSQSPDEIERYDFEEAAQDILATLLDQ--LGIEPFFL 74 (251)
T ss_pred HHHhc-ccCeEEEEcCC-C---CCCCCCCCccChhhHHHHHHHHHHHHHHH--cCCCeEEE
Confidence 45666 8999999 999 6 454311111112344555554 5555443 13345443
No 309
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=60.43 E-value=57 Score=36.42 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=37.1
Q ss_pred CcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccccccceeecCCCce--EEEe
Q 007140 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA--LVNE 316 (616)
Q Consensus 245 ~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~--l~~~ 316 (616)
....||+||.+ |+ .+| ....++.|.. .+++.+.|++....+..+.||||+.. ++.+
T Consensus 255 ~~L~fS~~G~~-Ll-----SGG-------~E~VLv~Wq~---~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 255 NSLSFSSDGAY-LL-----SGG-------REGVLVLWQL---ETGKKQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ceeEEecCCce-Ee-----ecc-------cceEEEEEee---cCCCcccccccCCeeEEEEEcCCCCeEEEEec
Confidence 35778888873 22 111 2245666776 66676668888888888999999875 4444
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=60.32 E-value=30 Score=33.44 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=28.3
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEec
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~l 77 (616)
+-...+||||+..|||... ...|.++|+-+.+...|
T Consensus 45 QWRkl~WSpD~tlLa~a~S----------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES----------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred hheEEEECCCCcEEEEEcC----------CCeEEEEecccceeEEc
Confidence 5678899999999999864 36788889887665554
No 311
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=59.09 E-value=2.1e+02 Score=29.07 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=48.3
Q ss_pred CceeEeccCCCCCCCC-ceEeccccccccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEE--eecccccccC
Q 007140 275 RDIIYTQPAEPAEGEK-PEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYS 351 (616)
Q Consensus 275 ~~~~~~~~~~~~~~g~-~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~ 351 (616)
.+.+..||+ ..|. ...++ ....+..+..+|....|+..... . +|-++|+.++++..... ....- ..
T Consensus 280 DHTIk~WDl---etg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssd--r--~irl~DPR~~~gs~v~~s~~gH~n--wV- 348 (423)
T KOG0313|consen 280 DHTIKVWDL---ETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSD--R--HIRLWDPRTGDGSVVSQSLIGHKN--WV- 348 (423)
T ss_pred cceEEEEEe---ecccceeeee-cCcceeEeecccccceeeecCCC--C--ceeecCCCCCCCceeEEeeecchh--hh-
Confidence 456777777 4333 33333 22334556777766655554321 2 67778888765432221 12111 00
Q ss_pred CCCCCCeeeCCCCCEEEEEeeecCCcccEEE
Q 007140 352 DPGSPMMTRTSTGTNVIAKIKKENDEQIYIL 382 (616)
Q Consensus 352 ~~g~~~~~~s~dgk~l~~~~~~~~~~~~~l~ 382 (616)
..+-|+|...+.++....++ ...+|
T Consensus 349 ----ssvkwsp~~~~~~~S~S~D~--t~klW 373 (423)
T KOG0313|consen 349 ----SSVKWSPTNEFQLVSGSYDN--TVKLW 373 (423)
T ss_pred ----hheecCCCCceEEEEEecCC--eEEEE
Confidence 12789998888877765443 34444
No 312
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=59.04 E-value=57 Score=25.74 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=24.3
Q ss_pred eEeeecCCCceeeeeecCCcccceeeEEeecCCCcccccccCCEEEEEeec
Q 007140 397 LDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKES 447 (616)
Q Consensus 397 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss 447 (616)
|.++|+++++.+.|...- .... +..+++|++.+++.-..
T Consensus 39 ll~ydp~t~~~~vl~~~L-----~fpN-------GVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 39 LLRYDPSTKETTVLLDGL-----YFPN-------GVALSPDESFVLVAETG 77 (89)
T ss_dssp EEEEETTTTEEEEEEEEE-----SSEE-------EEEE-TTSSEEEEEEGG
T ss_pred EEEEECCCCeEEEehhCC-----CccC-------eEEEcCCCCEEEEEecc
Confidence 447899999888775432 1111 24578898877776644
No 313
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=58.78 E-value=1e+02 Score=33.94 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=28.1
Q ss_pred ceEEEEeC-CCC-eeec-CCCCceeeeeECCCCcEEEEEec
Q 007140 157 AQLVLGSL-DGT-AKDF-GTPAVYTAVEPSPDQKYVLITSM 194 (616)
Q Consensus 157 ~~l~~~d~-~g~-~~~l-~~~~~~~~~~~SpDg~~i~~~~~ 194 (616)
..|.++|. +|+ +.++ +..+.++++.|++|-|+|+-++.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG 703 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeeecccchhheeecC
Confidence 46888888 776 3344 45567789999999999887653
No 314
>PRK13613 lipoprotein LpqB; Provisional
Probab=58.22 E-value=1.4e+02 Score=33.09 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=34.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-----EecccCCCccccccccceEEecCC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNS 98 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-----~~lt~~~~~~~~~~~~~~~wspdg 98 (616)
....+..|+||+.+|++.. ....|++-++.++.. +.+.... .+..++|..+|
T Consensus 364 ~~~s~avS~~g~~~A~v~~---------~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g 420 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA---------DGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRG 420 (599)
T ss_pred CccceEEcCCCceEEEEcC---------CCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCC
Confidence 4668999999999999953 246888877644332 2332211 15678888887
No 315
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=56.61 E-value=17 Score=33.50 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=24.2
Q ss_pred hHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 547 SSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
....| ++||.|+. |.| | +|..-..........++.++.+..++++
T Consensus 17 ~~~~l-~~~~~v~~~d~~-G---~G~s~~~~~~~~~~~~~~~~~l~~~l~~ 62 (228)
T PF12697_consen 17 LAEAL-ARGYRVIAFDLP-G---HGRSDPPPDYSPYSIEDYAEDLAELLDA 62 (228)
T ss_dssp HHHHH-HTTSEEEEEECT-T---STTSSSHSSGSGGSHHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCEEEEEecC-C---ccccccccccCCcchhhhhhhhhhcccc
Confidence 34556 58999999 999 6 5554332211122334444444444443
No 316
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=55.71 E-value=39 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=23.1
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE 70 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~ 70 (616)
.+....|||....||.... .++|+++.+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~----------~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE----------DGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEEC----------CCeEEEEECC
Confidence 3678999999999999864 3678888874
No 317
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=55.56 E-value=53 Score=31.64 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=13.6
Q ss_pred HHHHhhCCeEEEE-CCCCCc
Q 007140 548 SLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS 566 (616)
..++.+.||.|+. |.| |.
T Consensus 46 ~~~l~~~g~~vi~~d~~-G~ 64 (288)
T TIGR01250 46 RELLKEEGREVIMYDQL-GC 64 (288)
T ss_pred HHHHHhcCCEEEEEcCC-CC
Confidence 3455556999999 999 73
No 318
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=55.35 E-value=42 Score=31.43 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.0
Q ss_pred HHHHhhCCeEEEE-CCCCCc
Q 007140 548 SLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS 566 (616)
.+.| ++||.|+. |.| |.
T Consensus 33 ~~~l-~~~~~v~~~d~~-G~ 50 (251)
T TIGR02427 33 LPAL-TPDFRVLRYDKR-GH 50 (251)
T ss_pred HHHh-hcccEEEEecCC-CC
Confidence 3444 57999999 999 73
No 319
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=55.26 E-value=1.6e+02 Score=29.02 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=40.1
Q ss_pred ceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCc
Q 007140 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (616)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~ 99 (616)
..+|...|.+ .+++.+|||.++.|+..+= + ..|-+|++...+.++...... . +-...|.++.+
T Consensus 5 ~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------D--gslrlYdv~~~~l~~~~~~~~-p----lL~c~F~d~~~ 67 (323)
T KOG1036|consen 5 EFELENPPED-GISSVKFSPSSSDLLVSSW--------D--GSLRLYDVPANSLKLKFKHGA-P----LLDCAFADEST 67 (323)
T ss_pred ccccCCCChh-ceeeEEEcCcCCcEEEEec--------c--CcEEEEeccchhhhhheecCC-c----eeeeeccCCce
Confidence 3455544444 6899999999988877652 2 466677887777666654443 1 34556665443
No 320
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=54.32 E-value=12 Score=37.68 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=44.9
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....||||+..+.+-+- .+.+.++|+..|....+....+.. +....|.|-+++++..
T Consensus 125 diydL~Ws~d~~~l~s~s~----------dns~~l~Dv~~G~l~~~~~dh~~y----vqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSV----------DNSVRLWDVHAGQLLAILDDHEHY----VQGVAWDPLNQYVASK 183 (434)
T ss_pred chhhhhccCCCceeeeeec----------cceEEEEEeccceeEeeccccccc----cceeecchhhhhhhhh
Confidence 4778999999998887653 477888899999876665443333 6788999999987664
No 321
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=53.33 E-value=2.9e+02 Score=28.97 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEec--ccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~l--t~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.+....|+|+++.++....- +....+| ++.+... ++ +.+.+ . +....|+|-..+++++
T Consensus 112 pv~~~~f~~~d~t~l~s~sD-------d~v~k~~--d~s~a~v-~~~l~~htD-Y----VR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSD-------DKVVKYW--DLSTAYV-QAELSGHTD-Y----VRCGDISPANDHIVVT 171 (487)
T ss_pred ceeEEEecccCCeEEEecCC-------CceEEEE--EcCCcEE-EEEecCCcc-e----eEeeccccCCCeEEEe
Confidence 35677999998877665531 4455666 5444443 32 22222 2 6688999988888775
No 322
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=52.69 E-value=77 Score=29.87 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.8
Q ss_pred HhhCCeEEEE-CCCCCc
Q 007140 551 FLARRFAVLA-GPSIPI 566 (616)
Q Consensus 551 la~~Gy~Vl~-n~R~GS 566 (616)
+..+||.|+. |+| |.
T Consensus 35 ~l~~~~~vi~~D~~-G~ 50 (257)
T TIGR03611 35 VLTQRFHVVTYDHR-GT 50 (257)
T ss_pred HHHhccEEEEEcCC-CC
Confidence 3356899999 999 63
No 323
>PRK11460 putative hydrolase; Provisional
Probab=52.50 E-value=40 Score=32.09 Aligned_cols=62 Identities=10% Similarity=-0.078 Sum_probs=35.1
Q ss_pred chHHHHhhCCeEEEE-CCCCCcc----ccCCCccC-------ChhH--HHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 546 TSSLIFLARRFAVLA-GPSIPII----GEGDKLPN-------DRFV--EQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~----GyG~~f~~-------~~~g--~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
...+.|+..++-+.. .+| |.. +-|..|-. .... ....+.+.+.++++.++.-+|++||++-+
T Consensus 34 ~l~~~l~~~~~~~~~i~~~-g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~l~G 109 (232)
T PRK11460 34 EIGSWFAPAFPDALVVSVG-GPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIETVRYWQQQSGVGASATALIG 109 (232)
T ss_pred HHHHHHHHHCCCCEEECCC-CCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHHHHHHHHhcCCChhhEEEEE
Confidence 345678887754444 566 532 22333321 1110 12345566777777777668999998865
No 324
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=52.41 E-value=35 Score=33.52 Aligned_cols=55 Identities=5% Similarity=-0.103 Sum_probs=32.9
Q ss_pred HHhhCCeEEEE-CCCCCccccCCCccC--ChhHHHHHHHHHHHHHHHHHcCCccCCceEEEe
Q 007140 550 IFLARRFAVLA-GPSIPIIGEGDKLPN--DRFVEQLVSSAEAAVEEVVRRGVGLPILYLNTT 608 (616)
Q Consensus 550 ~la~~Gy~Vl~-n~R~GS~GyG~~f~~--~~~g~~~~~D~~~~v~~l~~~~~vD~~ri~~~~ 608 (616)
++...+|-|+. |++ +. +. ..+.. .+. ...-+++...+++|+++.-++.++|-+-+
T Consensus 61 ll~~~~~nVi~vD~~-~~-~~-~~y~~a~~~~-~~v~~~la~~l~~L~~~~g~~~~~i~lIG 118 (275)
T cd00707 61 YLSRGDYNVIVVDWG-RG-AN-PNYPQAVNNT-RVVGAELAKFLDFLVDNTGLSLENVHLIG 118 (275)
T ss_pred HHhcCCCEEEEEECc-cc-cc-cChHHHHHhH-HHHHHHHHHHHHHHHHhcCCChHHEEEEE
Confidence 44456899999 999 63 11 11221 111 11236788889998887446777775543
No 325
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=52.06 E-value=43 Score=34.31 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=46.4
Q ss_pred EEEc-CCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCC----CC--chHHHHhhCCeEEEE-CCCCCcc--
Q 007140 498 TLYL-PPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGM----TP--TSSLIFLARRFAVLA-GPSIPII-- 567 (616)
Q Consensus 498 ~l~~-P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~q~la~~Gy~Vl~-n~R~GS~-- 567 (616)
||++ |..++|..+ |+|||.|+ |....... .. ...+.|- .-++|. ||. -..
T Consensus 109 Wlvk~P~~~~pk~D---pVlIYlHG--------------GGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYs-Lt~~~ 168 (374)
T PF10340_consen 109 WLVKAPNRFKPKSD---PVLIYLHG--------------GGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYS-LTSSD 168 (374)
T ss_pred EEEeCCcccCCCCC---cEEEEEcC--------------CeeEecCCHHHHHHHHHHHHHcC--CCeEEEEecc-ccccc
Confidence 8898 988887543 99999943 32222110 00 1122222 458888 999 443
Q ss_pred ccCCCccCChhHHHHHHHHHHHHHHHH-HcCC
Q 007140 568 GEGDKLPNDRFVEQLVSSAEAAVEEVV-RRGV 598 (616)
Q Consensus 568 GyG~~f~~~~~g~~~~~D~~~~v~~l~-~~~~ 598 (616)
.+|..|+ ....++++.-++|+ ++|.
T Consensus 169 ~~~~~yP------tQL~qlv~~Y~~Lv~~~G~ 194 (374)
T PF10340_consen 169 EHGHKYP------TQLRQLVATYDYLVESEGN 194 (374)
T ss_pred cCCCcCc------hHHHHHHHHHHHHHhccCC
Confidence 3666776 35778889999999 5564
No 326
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=51.91 E-value=54 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=29.7
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcCCcc
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGL 600 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD 600 (616)
+.-+-|+++||+|+. =|.. .|-...-..........+++.|.+++-++
T Consensus 38 ~lLe~La~~Gy~ViAtPy~~-------tfDH~~~A~~~~~~f~~~~~~L~~~~~~~ 86 (250)
T PF07082_consen 38 YLLERLADRGYAVIATPYVV-------TFDHQAIAREVWERFERCLRALQKRGGLD 86 (250)
T ss_pred HHHHHHHhCCcEEEEEecCC-------CCcHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 446789999999999 6661 22322223334555666777787765444
No 327
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=51.56 E-value=4.1e+02 Score=30.17 Aligned_cols=27 Identities=7% Similarity=0.012 Sum_probs=17.7
Q ss_pred eEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc
Q 007140 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE 73 (616)
Q Consensus 36 ~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~ 73 (616)
+.-++-|.+|+|.. ..+|+.+++++.+
T Consensus 984 v~p~~~gt~LL~aq-----------g~~I~~lplng~~ 1010 (1289)
T KOG1214|consen 984 VTPPSVGTFLLYAQ-----------GQQIGYLPLNGTR 1010 (1289)
T ss_pred CcCCCCcceEEEec-----------cceEEEeecCcch
Confidence 33445578888764 3688888877643
No 328
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=51.26 E-value=2.9e+02 Score=28.62 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=37.5
Q ss_pred cceEEEEeC-CCCeeecCCCC------ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEec
Q 007140 156 TAQLVLGSL-DGTAKDFGTPA------VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (616)
Q Consensus 156 ~~~l~~~d~-~g~~~~l~~~~------~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (616)
...+|++|+ +.+..+|..++ ....++|- -+.|+|.... .....+..-++||.+|+++=+-..|.
T Consensus 153 YkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFh----d~nr~y~YyNDvy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFH----DSNRDYIYYNDVYAFDLDTYKWSKLE 223 (521)
T ss_pred hhheeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEccee----cCCCceEEeeeeEEEeccceeeeecc
Confidence 457999999 66788775321 22345552 3556665432 11111223469999999876655543
No 329
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=50.14 E-value=2.6e+02 Score=27.45 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=37.5
Q ss_pred ceEEEEeC-CCCeee-c-CCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeC--CCceEEEecC
Q 007140 157 AQLVLGSL-DGTAKD-F-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTT--DGKLVRELCD 226 (616)
Q Consensus 157 ~~l~~~d~-~g~~~~-l-~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~--~~~~~~~l~~ 226 (616)
.++-+-|+ +|.-.. | +..+.+..++|||...+|+++..-. ..+.+||+ .++..+.|..
T Consensus 168 ~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaD------------g~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 168 VQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSAD------------GAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred CcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCC------------ceEEEEEeecccceeEEeec
Confidence 45556677 665433 2 2334677899999999999986433 24556665 3566666654
No 330
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=49.40 E-value=36 Score=33.15 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=15.7
Q ss_pred HHHhhCCeEEEE-CCCCCccccCCC
Q 007140 549 LIFLARRFAVLA-GPSIPIIGEGDK 572 (616)
Q Consensus 549 q~la~~Gy~Vl~-n~R~GS~GyG~~ 572 (616)
..+++.||.|+. |.| | +|..
T Consensus 54 ~~l~~~~~~vi~~D~~-G---~G~S 74 (282)
T TIGR03343 54 GPFVDAGYRVILKDSP-G---FNKS 74 (282)
T ss_pred HHHHhCCCEEEEECCC-C---CCCC
Confidence 457788999999 999 6 4554
No 331
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=48.81 E-value=2.1e+02 Score=26.06 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=39.3
Q ss_pred ccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecc-cCCCccccccccceEEecCCcEEEEE
Q 007140 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF-ESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 39 SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt-~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
|-+|++=|.+-..+++ ++.++-..||++++.+++..+|- ...... .......|..|..+++..
T Consensus 66 s~~~~~saciegkg~~-a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k--~sPK~i~WiDD~~L~vII 129 (200)
T PF15525_consen 66 SENGKYSACIEGKGPE-AEEEGIGKIYIKNLNNNNWWSLQIDQNEEK--YSPKYIEWIDDNNLAVII 129 (200)
T ss_pred ccCCceeEEEEcCCCc-cccccceeEEEEecCCCceEEEEecCcccc--cCCceeEEecCCcEEEEE
Confidence 6678887877654322 23467789999999998876552 221111 012367899888766554
No 332
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.78 E-value=2.2e+02 Score=30.58 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=24.1
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceE
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (616)
.+.++..||||+.++..+ ++|-++|++++++
T Consensus 146 ~~~sl~is~D~~~l~~as---------------~~ik~~~~~~kev 176 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS---------------RQIKVLDIETKEV 176 (541)
T ss_pred ccceEEEcCCCCEEEecc---------------ceEEEEEccCceE
Confidence 467899999999887663 3688999987764
No 333
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=47.67 E-value=72 Score=36.33 Aligned_cols=19 Identities=16% Similarity=0.008 Sum_probs=15.9
Q ss_pred chHHHHhhCCeEEEE-CCCCC
Q 007140 546 TSSLIFLARRFAVLA-GPSIP 565 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~G 565 (616)
...+.|+++||.|+. |+| |
T Consensus 467 ~lA~~La~~Gy~VIaiDlp-G 486 (792)
T TIGR03502 467 AFAGTLAAAGVATIAIDHP-L 486 (792)
T ss_pred HHHHHHHhCCcEEEEeCCC-C
Confidence 345778999999999 998 5
No 334
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.61 E-value=1e+02 Score=34.26 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=38.0
Q ss_pred CCceeeecCCCCC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecC
Q 007140 19 GPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (616)
Q Consensus 19 g~~~~lt~~~~~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspd 97 (616)
+..++++.+.... .+..+.|++---.|...... ++ -|=.||+...+.+..+...... +....|||.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ-------Dg--~vK~~DlR~~~S~~t~~~nSES----iRDV~fsp~ 187 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ-------DG--TVKCWDLRSKKSKSTFRSNSES----IRDVKFSPG 187 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCC-------Cc--eEEEEeeecccccccccccchh----hhceeeccC
Confidence 3455555455444 36677888877777666543 33 3444476666655554332211 557788875
Q ss_pred Cc
Q 007140 98 ST 99 (616)
Q Consensus 98 g~ 99 (616)
-.
T Consensus 188 ~~ 189 (839)
T KOG0269|consen 188 YG 189 (839)
T ss_pred CC
Confidence 44
No 335
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=47.12 E-value=34 Score=37.11 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=28.7
Q ss_pred EEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 64 VWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 64 l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
++..+...|+.+++...+. ..++..+.|+||++.|++.
T Consensus 482 ~~~~~~~~g~~~rf~~~P~---gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPN---GAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred eeeccccccceeeeccCCC---CcccccceECCCCCEEEEE
Confidence 6777778888888864443 3457799999999987764
No 336
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=46.57 E-value=1.7e+02 Score=28.76 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=50.6
Q ss_pred eEEEEECCCCc--EEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccCCCCccCCCCCchHHHHhhCCeEEEE
Q 007140 483 EMIKYQRKDGV--PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (616)
Q Consensus 483 e~i~~~~~DG~--~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~la~~Gy~Vl~ 560 (616)
..+.+.+.+|. ++++... +--|. .-|+.+||-. ||+|-++.-+- ...+.|.+.|..|+-
T Consensus 7 ~~~k~~~~~~~~~~~~a~y~---D~~~~-gs~~gTVv~~--------------hGsPGSH~DFk-Yi~~~l~~~~iR~I~ 67 (297)
T PF06342_consen 7 KLVKFQAENGKIVTVQAVYE---DSLPS-GSPLGTVVAF--------------HGSPGSHNDFK-YIRPPLDEAGIRFIG 67 (297)
T ss_pred EEEEcccccCceEEEEEEEE---ecCCC-CCCceeEEEe--------------cCCCCCccchh-hhhhHHHHcCeEEEE
Confidence 45666666775 4555432 11111 1234567766 33333222113 345789999999999
Q ss_pred -CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHcCCcc
Q 007140 561 -GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRRGVGL 600 (616)
Q Consensus 561 -n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~~~vD 600 (616)
||= |+ |+-.+.....+... +...-++.|+++=-++
T Consensus 68 iN~P-Gf-~~t~~~~~~~~~n~---er~~~~~~ll~~l~i~ 103 (297)
T PF06342_consen 68 INYP-GF-GFTPGYPDQQYTNE---ERQNFVNALLDELGIK 103 (297)
T ss_pred eCCC-CC-CCCCCCcccccChH---HHHHHHHHHHHHcCCC
Confidence 999 74 45444444444333 3445566666652244
No 337
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=45.17 E-value=2.5e+02 Score=28.54 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCceeeecCCCCC-cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCce-EecccCCCccccccccceEEec
Q 007140 19 GPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVN 96 (616)
Q Consensus 19 g~~~~lt~~~~~~-~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~lt~~~~~~~~~~~~~~~wsp 96 (616)
+...++..+.... .++...|++ .-.+|...- ...|-++|+.+|.. ..++... .+.....+|
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~Sw---------DHTIk~WDletg~~~~~~~~~k------sl~~i~~~~ 310 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSW---------DHTIKVWDLETGGLKSTLTTNK------SLNCISYSP 310 (423)
T ss_pred cccCceEEecccccceeeEEEcC--CCceEeecc---------cceEEEEEeecccceeeeecCc------ceeEeeccc
Confidence 4444444344333 478999999 446787643 35678889987643 3333222 145667778
Q ss_pred CCcEEEE
Q 007140 97 NSTLLIF 103 (616)
Q Consensus 97 dg~~l~~ 103 (616)
..++|+.
T Consensus 311 ~~~Ll~~ 317 (423)
T KOG0313|consen 311 LSKLLAS 317 (423)
T ss_pred ccceeee
Confidence 7776665
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.16 E-value=5.9e+02 Score=30.38 Aligned_cols=61 Identities=23% Similarity=0.350 Sum_probs=39.0
Q ss_pred cceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 34 ~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
..+.|--||+.+|...-... .+...|-+|+.+ |...-......+ ....++|-|.|..++..
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~-----~~~RkirV~drE-g~Lns~se~~~~----l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESE-----TGTRKIRVYDRE-GALNSTSEPVEG----LQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred ceEEEccCCcEEEEEEEecc-----CCceeEEEeccc-chhhcccCcccc----cccceeecCCCCeEeee
Confidence 35899999999888654321 334678888876 543333211111 13489999999887765
No 339
>PLN02965 Probable pheophorbidase
Probab=43.08 E-value=53 Score=31.55 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=14.6
Q ss_pred HHHHhhCCeEEEE-CCCCC
Q 007140 548 SLIFLARRFAVLA-GPSIP 565 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~G 565 (616)
...|+++||-|+. |.| |
T Consensus 23 ~~~L~~~~~~via~Dl~-G 40 (255)
T PLN02965 23 ATLLDAAGFKSTCVDLT-G 40 (255)
T ss_pred HHHHhhCCceEEEecCC-c
Confidence 4568899999999 999 6
No 340
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=41.87 E-value=72 Score=20.32 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.0
Q ss_pred cCCCeEEEEEeeccccccCCCceeEEEEECCCCce
Q 007140 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (616)
Q Consensus 40 PDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~ 74 (616)
|||++|. +++. +...|.++|+.+++.
T Consensus 1 pd~~~ly-v~~~--------~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 1 PDGTKLY-VTNS--------GSNTVSVIDTATNKV 26 (42)
T ss_pred CCCCEEE-EEeC--------CCCEEEEEECCCCeE
Confidence 7888754 5543 457888899877653
No 341
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.83 E-value=1.2e+02 Score=29.88 Aligned_cols=74 Identities=9% Similarity=0.108 Sum_probs=42.6
Q ss_pred ccEEEEEEeCCCCCCCceEEeecccccccCCCCC-CCeeeCCCCCEEEEEeeecCCcccEEEEEecCCCCCCCcceeEee
Q 007140 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLF 400 (616)
Q Consensus 322 ~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~-~~~~~s~dgk~l~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~ 400 (616)
..+|++.+|.+. .+.++|+.+...+...=.|. ..+.+.|-...|++.- .++..+..+| ++
T Consensus 76 KYSHVH~yd~e~--~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR-~DGh~nLGvy----------------~l 136 (339)
T PF09910_consen 76 KYSHVHEYDTEN--DSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLAR-ADGHANLGVY----------------SL 136 (339)
T ss_pred ccceEEEEEcCC--CeEEEEEecccCCccccccchhheeeCCCcCEEEEEe-cCCcceeeeE----------------EE
Confidence 456999999887 46788876544332110111 1255566555555442 2333333444 78
Q ss_pred ecCCCceeeeeecC
Q 007140 401 DINTGSKERIWESN 414 (616)
Q Consensus 401 d~~~g~~~~l~~~~ 414 (616)
|.++|+.++|....
T Consensus 137 dr~~g~~~~L~~~p 150 (339)
T PF09910_consen 137 DRRTGKAEKLSSNP 150 (339)
T ss_pred cccCCceeeccCCC
Confidence 88899999886544
No 342
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=41.53 E-value=74 Score=30.65 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=14.3
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCC
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDK 572 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~ 572 (616)
.+.| +++|.|+. |+| | +|..
T Consensus 48 ~~~l-~~~~~vi~~D~~-G---~G~S 68 (278)
T TIGR03056 48 MPPL-ARSFRVVAPDLP-G---HGFT 68 (278)
T ss_pred HHHH-hhCcEEEeecCC-C---CCCC
Confidence 4445 45799999 999 6 5653
No 343
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.17 E-value=3.5e+02 Score=28.10 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=40.8
Q ss_pred cceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007140 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 34 ~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
-.+.|.-+-+.|.+.... ..-|-+||+++|++.+.+...... ++.+.|.|..-.++.
T Consensus 247 l~Ls~n~~~~nVLaSgsa---------D~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSA---------DKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLL 303 (463)
T ss_pred HHHHhccccceeEEecCC---------CceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEE
Confidence 366788888888877654 356777799999988776544333 789999986655444
No 344
>PHA01753 Holliday junction resolvase
Probab=41.05 E-value=25 Score=29.46 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=16.8
Q ss_pred hHHHHhhCCeEEEE-CCCCCc
Q 007140 547 SSLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~GS 566 (616)
-.++|-++||+|+. |+| ++
T Consensus 14 a~~~L~~~G~~il~rn~~-~~ 33 (121)
T PHA01753 14 TLEILESNGFKALRIPVS-GT 33 (121)
T ss_pred HHHHHHHCCCEEEEeccc-cC
Confidence 36799999999999 999 75
No 345
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=40.95 E-value=4.1e+02 Score=27.16 Aligned_cols=38 Identities=8% Similarity=0.276 Sum_probs=23.3
Q ss_pred eeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc
Q 007140 168 AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (616)
Q Consensus 168 ~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (616)
-..|++.++++.+++-++ +. +.+... ...|++||+..+
T Consensus 188 sfclGH~eFVS~isl~~~-~~-LlS~sG------------D~tlr~Wd~~sg 225 (390)
T KOG3914|consen 188 SFCLGHKEFVSTISLTDN-YL-LLSGSG------------DKTLRLWDITSG 225 (390)
T ss_pred hhccccHhheeeeeeccC-ce-eeecCC------------CCcEEEEecccC
Confidence 344566677888888765 33 333222 237999998754
No 346
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=40.93 E-value=74 Score=31.12 Aligned_cols=18 Identities=6% Similarity=0.043 Sum_probs=15.1
Q ss_pred hHHHHhhCCeEEEE-CCCCC
Q 007140 547 SSLIFLARRFAVLA-GPSIP 565 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R~G 565 (616)
....|+++||.|+. |.| |
T Consensus 37 ~~~~L~~~g~~vi~~dl~-g 55 (273)
T PLN02211 37 IRCLMENSGYKVTCIDLK-S 55 (273)
T ss_pred HHHHHHhCCCEEEEeccc-C
Confidence 35678889999999 999 6
No 347
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=39.81 E-value=4.3e+02 Score=26.99 Aligned_cols=141 Identities=12% Similarity=0.222 Sum_probs=72.7
Q ss_pred cceEEEEeC-CCCe----eecC-CCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCc-eEEEecCCC
Q 007140 156 TAQLVLGSL-DGTA----KDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLP 228 (616)
Q Consensus 156 ~~~l~~~d~-~g~~----~~l~-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~ 228 (616)
...|++..+ +|.. ++++ ..+.+..+.|||.-+-++++..-. ..|.+||+..+ +...+..-
T Consensus 233 ~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D------------gsIrIWDiRs~~~~~~~~~k- 299 (440)
T KOG0302|consen 233 VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD------------GSIRIWDIRSGPKKAAVSTK- 299 (440)
T ss_pred ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecC------------ceEEEEEecCCCccceeEee-
Confidence 345565555 4432 2222 233566899999988777775432 35778888654 22222210
Q ss_pred CCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEec-cccccccceeec
Q 007140 229 PAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH-KLDLRFRSVSWC 307 (616)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~-~~~~~~~~~~ws 307 (616)
+.+ ..+.-++|+.+-. ++.. . .....+-+|++.-|+.+++...+ .....+..+.|+
T Consensus 300 -Ah~---------sDVNVISWnr~~~----lLas-G--------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 300 -AHN---------SDVNVISWNRREP----LLAS-G--------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred -ccC---------CceeeEEccCCcc----eeee-c--------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 000 0012367875433 2211 1 11234555666556666665543 344567889999
Q ss_pred CCCceEEEeeeccCccEEEEEEeCCC
Q 007140 308 DDSLALVNETWYKTSQTRTWLVCPGS 333 (616)
Q Consensus 308 pDg~~l~~~~~~~~~~~~l~~~d~~~ 333 (616)
|.....+.... .+.+..||-+.++.
T Consensus 357 p~e~s~iaasg-~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 357 PHEDSVIAASG-EDNQITIWDLSVEA 381 (440)
T ss_pred cccCceEEecc-CCCcEEEEEeeccC
Confidence 97544332221 23455677666654
No 348
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=39.68 E-value=2.3e+02 Score=31.91 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=33.0
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC--Cc---eEecccCCCccccccccceEEecCCcEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GE---AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~--g~---~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
+.-.++||.++.+|-.-. +| +|.++.--+ ++ .+.+ .-. ...+..+.||+||..|+-
T Consensus 208 ~t~~~~spn~~~~Aa~d~--------dG--rI~vw~d~~~~~~~~t~t~l-HWH----~~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDS--------DG--RILVWRDFGSSDDSETCTLL-HWH----HDEVNSLSFSSDGAYLLS 268 (792)
T ss_pred ceeEEeccccceEEEecc--------CC--cEEEEeccccccccccceEE-Eec----ccccceeEEecCCceEee
Confidence 355799999998876532 33 466655332 22 1222 111 123678999999987755
No 349
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.57 E-value=51 Score=35.75 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=32.9
Q ss_pred ccceeecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEE--eecccccccCCCCCCCeeeCCCCCEEE
Q 007140 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFENVYSDPGSPMMTRTSTGTNVI 368 (616)
Q Consensus 301 ~~~~~wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l--~~~~~~~~~~~~g~~~~~~s~dgk~l~ 368 (616)
+..+.|.|||..|+.... .+|+++|...+ +.-..| ....+.. ++|+.||++++
T Consensus 15 i~d~afkPDGsqL~lAAg-----~rlliyD~ndG-~llqtLKgHKDtVyc---------VAys~dGkrFA 69 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAG-----SRLLVYDTSDG-TLLQPLKGHKDTVYC---------VAYAKDGKRFA 69 (1081)
T ss_pred hheeEECCCCceEEEecC-----CEEEEEeCCCc-ccccccccccceEEE---------EEEccCCceec
Confidence 456899999987655431 27999998764 222222 1222222 88999998654
No 350
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=39.55 E-value=48 Score=20.64 Aligned_cols=18 Identities=44% Similarity=0.815 Sum_probs=15.3
Q ss_pred cccceEEccCCCeEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSV 49 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~ 49 (616)
.+....|+|+++.|+-.+
T Consensus 13 ~i~~i~~~~~~~~~~s~~ 30 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGS 30 (39)
T ss_dssp SEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEecccccceeeC
Confidence 588999999999887765
No 351
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=39.52 E-value=95 Score=34.17 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=38.4
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
...+.-+|-...+||.+ +.-+.+++++.-+..-|....... +..++||++|++|+-
T Consensus 40 ~~gLa~~p~Sgl~aYpA-----------GCvVVlfn~~~~tQ~hlvnssRk~----~t~vAfS~~Gryvat 95 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPA-----------GCVVVLFNVDSCTQSHLVNSSRKP----LTCVAFSQNGRYVAT 95 (1080)
T ss_pred CCcccccccccceeecc-----------CcEEEEEcccccchhheecccCcc----eeEEEEcCCCcEEEe
Confidence 56778888888899986 356778888764433332333222 678999999998765
No 352
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=38.67 E-value=6.5e+02 Score=28.74 Aligned_cols=170 Identities=13% Similarity=0.164 Sum_probs=84.0
Q ss_pred ccceEEEEeCCC-Ceee------cCCC-CceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEecC
Q 007140 155 TTAQLVLGSLDG-TAKD------FGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (616)
Q Consensus 155 ~~~~l~~~d~~g-~~~~------l~~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (616)
...+|+.+.++| +..+ |.-+ ..+..+.|.=--+.|+.+.... ..|..-.++|.+.+.+.+
T Consensus 997 qg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g------------~SI~rasL~G~Ep~ti~n 1064 (1289)
T KOG1214|consen 997 QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAG------------RSISRASLEGAEPETIVN 1064 (1289)
T ss_pred ccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCC------------CccccccccCCCCceeec
Confidence 456788888765 2211 2222 2334566644445555553322 245555666666665544
Q ss_pred CCCCCCCCccccCccCCCCcceeecCCCceEEEEEeecCCCcccccCCCceeEeccCCCCCCCCceEeccccc-ccccee
Q 007140 227 LPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL-RFRSVS 305 (616)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~-~~~~~~ 305 (616)
-.+.+ +..-.+.|+ + ..+||... ..+.|-+..+ +|.+.+.|...+. ....+.
T Consensus 1065 ~~L~S----------PEGiAVDh~--~-Rn~ywtDS-----------~lD~IevA~L---dG~~rkvLf~tdLVNPR~iv 1117 (1289)
T KOG1214|consen 1065 SGLIS----------PEGIAVDHI--R-RNMYWTDS-----------VLDKIEVALL---DGSERKVLFYTDLVNPRAIV 1117 (1289)
T ss_pred ccCCC----------ccceeeeec--c-ceeeeecc-----------ccchhheeec---CCceeeEEEeecccCcceEE
Confidence 22221 111234554 2 34777621 2223333233 5545555654432 223333
Q ss_pred ecCCCceEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEEEee
Q 007140 306 WCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (616)
Q Consensus 306 wspDg~~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~~~~ 372 (616)
..+=+.-|++.+|.+. ...|-..++++. ..|+|...++. .|.+ +.+.|..+.|.+...
T Consensus 1118 ~D~~rgnLYwtDWnRe-nPkIets~mDG~--NrRilin~Dig----LPNG--Ltfdpfs~~LCWvDA 1175 (1289)
T KOG1214|consen 1118 VDPIRGNLYWTDWNRE-NPKIETSSMDGE--NRRILINTDIG----LPNG--LTFDPFSKLLCWVDA 1175 (1289)
T ss_pred eecccCceeecccccc-CCcceeeccCCc--cceEEeecccC----CCCC--ceeCcccceeeEEec
Confidence 3333344777776543 347888888874 44666544432 1221 677788888777653
No 353
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=38.37 E-value=1.9e+02 Score=29.82 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=36.6
Q ss_pred ccceEEccCCCeEEEEEeec-c-----c----cccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcE
Q 007140 33 INFVSWSPDGKRIAFSVRVD-E-----E----DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~-~-----~----~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~ 100 (616)
...++|.|||+ |.+..... . . .........||.+++++++...+... -. ....+.|+|+|+.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-~r----np~Gl~~d~~G~l 197 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-FQ----NPYGHSVDSWGDV 197 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC-cC----CCccceECCCCCE
Confidence 56899999996 45543210 0 0 00001225799999988876666421 11 1347899999885
No 354
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=37.75 E-value=2.1e+02 Score=29.15 Aligned_cols=27 Identities=22% Similarity=0.550 Sum_probs=18.9
Q ss_pred CCeee-cCCCCceeeeeECCCCcEEEEE
Q 007140 166 GTAKD-FGTPAVYTAVEPSPDQKYVLIT 192 (616)
Q Consensus 166 g~~~~-l~~~~~~~~~~~SpDg~~i~~~ 192 (616)
+..+. |.+..++..++||||+++|+..
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITA 169 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEe
Confidence 43333 3444567799999999888866
No 355
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=37.62 E-value=3.5e+02 Score=26.28 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=71.6
Q ss_pred CCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc-eEecccCCCcc-ccccccceEE
Q 007140 17 SLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDIC-LNAVFGSFVW 94 (616)
Q Consensus 17 ~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~-~~~lt~~~~~~-~~~~~~~~~w 94 (616)
.+|+..+-+.++....-...+.- +.+|.-+.= .....+++|.++=+ ...++...++. +. ..+..-|
T Consensus 76 ~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTW---------k~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li 143 (264)
T PF05096_consen 76 ETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTW---------KEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLI 143 (264)
T ss_dssp TTSSEEEEEE-TTT--EEEEEEE--TTEEEEEES---------SSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEE
T ss_pred CCCcEEEEEECCccccceeEEEE--CCEEEEEEe---------cCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEE
Confidence 34777666667765322233333 567777763 35778899998754 34554444432 22 2334445
Q ss_pred ecCC-cEEEEEecCCCCCCCCCcccCCCCeeeecCccccchhccccccccCCCcccceeEe-ccceEEEEeC-CCCeeec
Q 007140 95 VNNS-TLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-TTAQLVLGSL-DGTAKDF 171 (616)
Q Consensus 95 spdg-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~-~~~~l~~~d~-~g~~~~l 171 (616)
..|| ..|.|.-|..-... ..+...+.|+. ......+.. .+...+++. .+..|.++|+ +|++...
T Consensus 144 ~SDGS~~L~~~dP~~f~~~---------~~i~V~~~g~p--v~~LNELE~--i~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 144 MSDGSSRLYFLDPETFKEV---------RTIQVTDNGRP--VSNLNELEY--INGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EE-SSSEEEEE-TTT-SEE---------EEEE-EETTEE-----EEEEEE--ETTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EECCccceEEECCcccceE---------EEEEEEECCEE--CCCcEeEEE--EcCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 5555 46777644321100 01111111211 011111000 112222222 5678999999 8875432
Q ss_pred C-------------C----CCceeeeeECCCCcEEEEEe
Q 007140 172 G-------------T----PAVYTAVEPSPDQKYVLITS 193 (616)
Q Consensus 172 ~-------------~----~~~~~~~~~SpDg~~i~~~~ 193 (616)
. . .+...++++.|+.++++++-
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1 1 12456999999999988885
No 356
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=37.09 E-value=5.1e+02 Score=27.13 Aligned_cols=58 Identities=9% Similarity=0.104 Sum_probs=38.8
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
+..+.-+|+|.+|+--. -..+||+|.+.+|+.--+. ... -..+..+.||.||.+|+-.
T Consensus 84 v~al~s~n~G~~l~ag~----------i~g~lYlWelssG~LL~v~-~aH---YQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT----------ISGNLYLWELSSGILLNVL-SAH---YQSITCLKFSDDGSHIITG 141 (476)
T ss_pred eeeeecCCCceEEEeec----------ccCcEEEEEeccccHHHHH-Hhh---ccceeEEEEeCCCcEEEec
Confidence 67888899998755431 2468999999999743332 111 1125688999999977653
No 357
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=36.89 E-value=1.6e+02 Score=27.45 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=29.6
Q ss_pred HHHHhhCCeEEEECCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 548 SLIFLARRFAVLAGPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 548 ~q~la~~Gy~Vl~n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
......+||+|.. -||+.. .+++--..-+.+...+|+|+++.
T Consensus 90 v~~a~~~gY~vas------vgY~l~-~q~htL~qt~~~~~~gv~filk~ 131 (270)
T KOG4627|consen 90 VGPAVRRGYRVAS------VGYNLC-PQVHTLEQTMTQFTHGVNFILKY 131 (270)
T ss_pred hhhhhhcCeEEEE------eccCcC-cccccHHHHHHHHHHHHHHHHHh
Confidence 5578899999988 234332 12333456789999999999986
No 358
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=36.59 E-value=5.3e+02 Score=28.19 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=46.3
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCcccceEEccCCCe--EEEEEeeccccccCCCceeEEEEECCCCce-Eec-cc
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPL-FE 79 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~-~~l-t~ 79 (616)
+|+|++++=.. +=|..+.|-++. -+....|+|-+.. =|+++-- ..+...+|-+-..+-+. +.+ ++
T Consensus 35 LT~L~l~~gE~--kfGds~viGqFE---hV~GlsW~P~~~~~~paLLAVQ------HkkhVtVWqL~~s~~e~~K~l~sQ 103 (671)
T PF15390_consen 35 LTDLQLHNGEP--KFGDSKVIGQFE---HVHGLSWAPPCTADTPALLAVQ------HKKHVTVWQLCPSTTERNKLLMSQ 103 (671)
T ss_pred EEeeeeeCCcc--ccCCccEeeccc---eeeeeeecCcccCCCCceEEEe------ccceEEEEEeccCccccccceeee
Confidence 57788875322 235666665433 2678899996421 1222211 03445667665444322 211 11
Q ss_pred CCCc--cccccccceEEecCCcEEEEEe
Q 007140 80 SPDI--CLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 80 ~~~~--~~~~~~~~~~wspdg~~l~~~~ 105 (616)
.-+. .+..-..+..|.|....|.++.
T Consensus 104 tcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 104 TCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred eeeccCCcccCCCcccccCCCceEEEEe
Confidence 1111 1111234789999998887763
No 359
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=36.46 E-value=57 Score=31.74 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=41.5
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCC---------ccccccccceEEecCCcEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD---------ICLNAVFGSFVWVNNSTLLI 102 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~---------~~~~~~~~~~~wspdg~~l~ 102 (616)
.+-.+.|||..++|.++... ++...||=+.-++|..+.+-++.. ...+..+.++.|+.|+.+++
T Consensus 190 ~vlaV~Wsp~~e~vLatgsa-------Dg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGSA-------DGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred ceEEEEeccCceeEEEecCC-------CceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence 47789999999999998875 455566644444444433322210 01123356889999998876
Q ss_pred EE
Q 007140 103 FT 104 (616)
Q Consensus 103 ~~ 104 (616)
..
T Consensus 263 ~~ 264 (397)
T KOG4283|consen 263 SC 264 (397)
T ss_pred hc
Confidence 64
No 360
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=35.67 E-value=4.6e+02 Score=26.16 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=35.4
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEEC-CCCceEecccCCCccccccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA-ETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~-~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
.+..+.|+|-+++|.-.+. +.+--|| .. .+|+-++..-.- .+|.......|||.+..++.
T Consensus 57 ~vtgvdWap~snrIvtcs~--------drnayVw--~~~~~~~WkptlvLl--RiNrAAt~V~WsP~enkFAV 117 (361)
T KOG1523|consen 57 IVTGVDWAPKSNRIVTCSH--------DRNAYVW--TQPSGGTWKPTLVLL--RINRAATCVKWSPKENKFAV 117 (361)
T ss_pred ceeEEeecCCCCceeEccC--------CCCcccc--ccCCCCeeccceeEE--EeccceeeEeecCcCceEEe
Confidence 4667899999999887764 3334444 44 445432221011 12333557889998887766
No 361
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=35.41 E-value=4.8e+02 Score=26.26 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=26.0
Q ss_pred eeEEEEECCCCceEecccCC----------CccccccccceEEecCCcEEEEE
Q 007140 62 LRVWIADAETGEAKPLFESP----------DICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 62 ~~l~v~~~~~g~~~~lt~~~----------~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
..|+.++..+.-.+.+.-.. ....|..+..++++|||+.|+.+
T Consensus 112 p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 112 PRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred CEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 89999998733223331111 11124446689999999976665
No 362
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=34.83 E-value=7.1e+02 Score=28.58 Aligned_cols=21 Identities=10% Similarity=-0.132 Sum_probs=16.6
Q ss_pred ceeeeeECCCCcEEEEEeccC
Q 007140 176 VYTAVEPSPDQKYVLITSMHR 196 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~ 196 (616)
...-+.|||.|+.++|+..++
T Consensus 149 ~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 149 KIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred eeEEEEEcCCCCEEEEEEecc
Confidence 345789999999999997643
No 363
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=34.59 E-value=32 Score=33.92 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=13.0
Q ss_pred HHHhhCCeEEEE-CCC
Q 007140 549 LIFLARRFAVLA-GPS 563 (616)
Q Consensus 549 q~la~~Gy~Vl~-n~R 563 (616)
--+|++||+|.. -.|
T Consensus 139 ~~LAShG~VVaavEHR 154 (399)
T KOG3847|consen 139 TSLASHGFVVAAVEHR 154 (399)
T ss_pred hhHhhCceEEEEeecc
Confidence 359999999999 777
No 364
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=33.21 E-value=4.8e+02 Score=25.60 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=51.8
Q ss_pred CCCCceeeecCCCCCcccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEec
Q 007140 17 SLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (616)
Q Consensus 17 ~~g~~~~lt~~~~~~~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wsp 96 (616)
++|+.+++- +..+.....++.-|||.. ++. +..+.|-.++.++.+.++.+-..+ ..++......|.+
T Consensus 91 ~tGev~~yp-Lg~Ga~Phgiv~gpdg~~--Wit---------d~~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~ 157 (353)
T COG4257 91 ATGEVETYP-LGSGASPHGIVVGPDGSA--WIT---------DTGLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDP 157 (353)
T ss_pred CCCceEEEe-cCCCCCCceEEECCCCCe--eEe---------cCcceeEEecCcccceEEeecccc-cCCCcccceeeCC
Confidence 789998888 888877888999999983 333 234589999998887665542222 1133356788988
Q ss_pred CCcEEEEE
Q 007140 97 NSTLLIFT 104 (616)
Q Consensus 97 dg~~l~~~ 104 (616)
+|. |-|+
T Consensus 158 ~G~-lWFt 164 (353)
T COG4257 158 WGN-LWFT 164 (353)
T ss_pred Ccc-EEEe
Confidence 887 5554
No 365
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=32.99 E-value=1.3e+02 Score=20.07 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=23.4
Q ss_pred ccceEEccCCC---eEEEEEeeccccccCCCceeEEEEECCCC-ceEec
Q 007140 33 INFVSWSPDGK---RIAFSVRVDEEDNVSSCKLRVWIADAETG-EAKPL 77 (616)
Q Consensus 33 ~~~~~~SPDG~---~iaf~~~~~~~~~~~~~~~~l~v~~~~~g-~~~~l 77 (616)
+...+|||+.. .|+|+ +....+.++|+.++ ..+|+
T Consensus 3 vR~~kFsP~~~~~DLL~~~----------E~~g~vhi~D~R~~f~~~QV 41 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWA----------EHQGRVHIVDTRSNFMRRQV 41 (43)
T ss_pred eEEEEeCCCCCcccEEEEE----------ccCCeEEEEEcccCccceEe
Confidence 56789998554 66665 34578899999853 33443
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=32.66 E-value=4.6e+02 Score=25.27 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=27.0
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEe
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (616)
..++++|.||.+.|+.+.++. ..|+.++.+|+..+.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~------------~~i~els~~G~vlr~i 59 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEP------------GEIYELSLDGKVLRRI 59 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTT------------TEEEEEETT--EEEEE
T ss_pred CccccEEcCCCCeEEEEECCC------------CEEEEEcCCCCEEEEE
Confidence 478999999999998887653 3688888887766654
No 367
>PRK10673 acyl-CoA esterase; Provisional
Probab=32.44 E-value=89 Score=29.71 Aligned_cols=37 Identities=3% Similarity=0.059 Sum_probs=20.9
Q ss_pred hCCeEEEE-CCCCCccccCCCccCChhH-HHHHHHHHHHHHHH
Q 007140 553 ARRFAVLA-GPSIPIIGEGDKLPNDRFV-EQLVSSAEAAVEEV 593 (616)
Q Consensus 553 ~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g-~~~~~D~~~~v~~l 593 (616)
+++|-|+. |.| | +|..-....+. ....+|+.+.++++
T Consensus 40 ~~~~~vi~~D~~-G---~G~s~~~~~~~~~~~~~d~~~~l~~l 78 (255)
T PRK10673 40 VNDHDIIQVDMR-N---HGLSPRDPVMNYPAMAQDLLDTLDAL 78 (255)
T ss_pred hhCCeEEEECCC-C---CCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 46899999 999 6 45332221221 22345666666554
No 368
>PRK14676 hypothetical protein; Provisional
Probab=32.02 E-value=33 Score=28.67 Aligned_cols=16 Identities=19% Similarity=-0.045 Sum_probs=15.0
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|.++||-||. |+|
T Consensus 18 ~~~L~~~Gy~Il~rN~r 34 (117)
T PRK14676 18 ARIYDRSGRPVAARRWR 34 (117)
T ss_pred HHHHHHCCCEEeeeecC
Confidence 5789999999999 999
No 369
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=31.61 E-value=40 Score=27.64 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.6
Q ss_pred eeeECCCCcEEEEEecc
Q 007140 179 AVEPSPDQKYVLITSMH 195 (616)
Q Consensus 179 ~~~~SpDg~~i~~~~~~ 195 (616)
.-.|||||++|-|+-++
T Consensus 72 vHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 72 VHVFSPDGSWLSFTYND 88 (122)
T ss_pred ceEECCCCCEEEEEecc
Confidence 56899999999999664
No 370
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=31.18 E-value=19 Score=28.72 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=16.1
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCC
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGD 571 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~ 571 (616)
..+|-.+||.||. |+| .++|.
T Consensus 7 ~~~L~~~G~~IL~rN~r---~~~GE 28 (93)
T PF02021_consen 7 ARYLERKGYRILERNWR---CRRGE 28 (93)
T ss_dssp HHHHHHTT-EEEEEEEE---ETTEE
T ss_pred HHHHHHCCCEEeeeeec---CCCCc
Confidence 4689999999999 999 35553
No 371
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=30.84 E-value=18 Score=20.43 Aligned_cols=10 Identities=40% Similarity=0.923 Sum_probs=7.4
Q ss_pred ceEEccCCCe
Q 007140 35 FVSWSPDGKR 44 (616)
Q Consensus 35 ~~~~SPDG~~ 44 (616)
--.|||||+.
T Consensus 5 ~t~FSp~Grl 14 (23)
T PF10584_consen 5 ITTFSPDGRL 14 (23)
T ss_dssp TTSBBTTSSB
T ss_pred ceeECCCCeE
Confidence 3478999984
No 372
>PRK14679 hypothetical protein; Provisional
Probab=30.65 E-value=36 Score=28.97 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=15.1
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
.++|..+||.||. |+|
T Consensus 26 ~~~L~~~Gy~Il~rN~r 42 (128)
T PRK14679 26 LLALMLKGYRPLARRFA 42 (128)
T ss_pred HHHHHHCCCEEEeeecc
Confidence 5799999999999 999
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=1.4e+02 Score=32.39 Aligned_cols=50 Identities=30% Similarity=0.558 Sum_probs=34.5
Q ss_pred eEEeecCCCCCCCCceeeecCC-CCCccc-ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCc
Q 007140 7 IGIHRLLPDDSLGPEKEVHGYP-DGAKIN-FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE 73 (616)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~-~~~~~~-~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~ 73 (616)
|-|+++ ...|.++ +| .+.... +.+|-|||+.||+-.. +..|-+.|+.+|.
T Consensus 44 lli~R~------n~qRlwt-ip~p~~~v~~sL~W~~DGkllaVg~k----------dG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 44 LLIHRL------NWQRLWT-IPIPGENVTASLCWRPDGKLLAVGFK----------DGTIRLHDVEKGG 95 (665)
T ss_pred EEEEEe------ccceeEe-ccCCCCccceeeeecCCCCEEEEEec----------CCeEEEEEccCCC
Confidence 667776 3344444 55 332444 8999999999999764 2677888998775
No 374
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=30.02 E-value=1.1e+02 Score=30.26 Aligned_cols=55 Identities=13% Similarity=-0.020 Sum_probs=29.8
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc--CCccCCceEEE
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR--GVGLPILYLNT 607 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~--~~vD~~ri~~~ 607 (616)
.+.|-..||.||+ .-+.-=.|||..-. ..|.+||.++|+||... |.-..++|.+-
T Consensus 56 a~aL~~~~wsl~q~~LsSSy~G~G~~SL-----~~D~~eI~~~v~ylr~~~~g~~~~~kIVLm 113 (303)
T PF08538_consen 56 AEALEETGWSLFQVQLSSSYSGWGTSSL-----DRDVEEIAQLVEYLRSEKGGHFGREKIVLM 113 (303)
T ss_dssp HHHHT-TT-EEEEE--GGGBTTS-S--H-----HHHHHHHHHHHHHHHHHS------S-EEEE
T ss_pred HHHhccCCeEEEEEEecCccCCcCcchh-----hhHHHHHHHHHHHHHHhhccccCCccEEEE
Confidence 4456667999999 77721234554222 46899999999999876 43456666553
No 375
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=29.91 E-value=2.5e+02 Score=30.98 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=21.4
Q ss_pred CCCcccceeEeccceEEEEeC-CCCeeecC
Q 007140 144 DEYDESLFDYYTTAQLVLGSL-DGTAKDFG 172 (616)
Q Consensus 144 ~~~d~~~~~~~~~~~l~~~d~-~g~~~~l~ 172 (616)
.+.+..++++.....||+.++ +++.++|+
T Consensus 208 cP~~~~fia~i~~~dl~V~n~~~~~ekrlt 237 (867)
T KOG2281|consen 208 CPADPDFIAYIKVCDLWVLNILTGEEKRLT 237 (867)
T ss_pred CCCCccceeeeehhhhhhhhhhhchhhcee
Confidence 445667778888889999998 77666553
No 376
>PRK14689 hypothetical protein; Provisional
Probab=29.47 E-value=42 Score=28.37 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=15.4
Q ss_pred hHHHHhhCCeEEEE-CCC
Q 007140 547 SSLIFLARRFAVLA-GPS 563 (616)
Q Consensus 547 ~~q~la~~Gy~Vl~-n~R 563 (616)
-.++|..+||-|+. |+|
T Consensus 18 Aa~~L~~~Gy~Il~rN~r 35 (124)
T PRK14689 18 VLRLLQRRGWRLLDRNWS 35 (124)
T ss_pred HHHHHHHCCCEEEEEecC
Confidence 36789999999999 999
No 377
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.39 E-value=8.5e+02 Score=27.32 Aligned_cols=57 Identities=14% Similarity=0.356 Sum_probs=34.2
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
+.+.+|.-||++|..+..- ..|.|=.+++. +|..-. --........||+|.+.++|.
T Consensus 118 V~SmsWn~dG~kIcIvYeD----------GavIVGsvdGN---RIwgKe--Lkg~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYED----------GAVIVGSVDGN---RIWGKE--LKGQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEcCCCcEEEEEEcc----------CCEEEEeeccc---eecchh--cchheccceeecccHHHHHhh
Confidence 5688999999999988642 34444444442 111000 000113467899999988773
No 378
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=29.14 E-value=7.8e+02 Score=26.79 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=27.6
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEec
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (616)
.++.++|+.||=.|++.+.. ..++++|+...+.-.+.
T Consensus 230 svTal~F~d~gL~~aVGts~-------------G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-------------GSVLIYDLRASKPLLVK 266 (703)
T ss_pred cceEEEecCCceeEEeeccC-------------CcEEEEEcccCCceeec
Confidence 46789999999999888643 36899999866554443
No 379
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.78 E-value=2.3e+02 Score=28.13 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=38.3
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
.++.+...|.|+ ||..+.. ..-|-+||+=.|..--+...... .....|+|.|.+++..
T Consensus 129 ~Vt~lsiHPS~K-LALsVg~---------D~~lr~WNLV~Gr~a~v~~L~~~-----at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 129 QVTDLSIHPSGK-LALSVGG---------DQVLRTWNLVRGRVAFVLNLKNK-----ATLVSWSPQGDHFVVS 186 (362)
T ss_pred ccceeEecCCCc-eEEEEcC---------CceeeeehhhcCccceeeccCCc-----ceeeEEcCCCCEEEEE
Confidence 477888999888 5776643 24555667766654444433332 2458999999987765
No 380
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.66 E-value=3.2e+02 Score=29.36 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=34.0
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecC
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspd 97 (616)
...+.+.||||+.++-.+ .+|-+++++++|..+-+...... ++.+.|.-+
T Consensus 146 ~~~sl~is~D~~~l~~as------------~~ik~~~~~~kevv~~ftgh~s~----v~t~~f~~~ 195 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS------------RQIKVLDIETKEVVITFTGHGSP----VRTLSFTTL 195 (541)
T ss_pred ccceEEEcCCCCEEEecc------------ceEEEEEccCceEEEEecCCCcc----eEEEEEEEe
Confidence 578999999999876543 58889999998755433222212 566677654
No 381
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=28.53 E-value=6.7e+02 Score=25.85 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred ccceEEEEeC-CCC-eeecCCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCce
Q 007140 155 TTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (616)
Q Consensus 155 ~~~~l~~~d~-~g~-~~~l~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (616)
....+.++++ +|+ ...|..++.+.+++|+-||..+.-+..+ ..|.++|...++
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~ 206 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGT 206 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCc
Confidence 3567888899 774 5567777888899999999988766432 267788876554
No 382
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.52 E-value=5.4e+02 Score=24.73 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=37.6
Q ss_pred eccccccccceeecCC-Cc---eEEEeeeccCccEEEEEEeCCCCCCCceEEeecccccccCCCCCCCeeeCCCCCEEEE
Q 007140 294 LHKLDLRFRSVSWCDD-SL---ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (616)
Q Consensus 294 l~~~~~~~~~~~wspD-g~---~l~~~~~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~s~dgk~l~~ 369 (616)
|-.....++.++|.|. |. .++..+ .++..-||..+.+...-+.++|.+ +.+... .++||.-|..|.+
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~--f~~~~w-----~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEE--FPDVVW-----RVSWSLSGNILAV 273 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCccccccccc--CCcceE-----EEEEeccccEEEE
Confidence 3333344678999997 33 244433 346667888875543223343422 111110 1788998987776
Q ss_pred Ee
Q 007140 370 KI 371 (616)
Q Consensus 370 ~~ 371 (616)
..
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 54
No 383
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=28.25 E-value=98 Score=33.20 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=19.7
Q ss_pred EEEECCCCcEEEEEEEcCCCCCCCCCCCCcEEEec
Q 007140 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWA 519 (616)
Q Consensus 485 i~~~~~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~ 519 (616)
..|.+..|.+|+...-.|++.++ + |.||+.
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~~~--k---~~VVLl 207 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDNKA--K---EDVLFI 207 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCCCC--C---CeEEEE
Confidence 35555567899999988876432 1 456666
No 384
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.11 E-value=1.6e+02 Score=32.40 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred EEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEecCCCCCCCCCc
Q 007140 37 SWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKT 116 (616)
Q Consensus 37 ~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~ 116 (616)
.++-.++.|++-+++ ..||+++-.+|+.+.+.+...... .....-|++...+++..
T Consensus 40 c~dst~~~l~~GsS~----------G~lyl~~R~~~~~~~~~~~~~~~~---~~~~~vs~~e~lvAagt----------- 95 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSA----------GSVYLYNRHTGEMRKLKNEGATGI---TCVRSVSSVEYLVAAGT----------- 95 (726)
T ss_pred EeecCCceEEEeccc----------ceEEEEecCchhhhcccccCccce---EEEEEecchhHhhhhhc-----------
Q ss_pred ccCCCCeeeecCccccchhccccccccCCCcccceeEeccceEEEEeC-CCCeeec--------CCCCceeeeeECCCCc
Q 007140 117 MVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDF--------GTPAVYTAVEPSPDQK 187 (616)
Q Consensus 117 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~d~-~g~~~~l--------~~~~~~~~~~~SpDg~ 187 (616)
...++.++-+ .+.+..+ +.+..++.+.||+|++
T Consensus 96 --------------------------------------~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~ 137 (726)
T KOG3621|consen 96 --------------------------------------ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM 137 (726)
T ss_pred --------------------------------------CCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc
Q ss_pred EEEE
Q 007140 188 YVLI 191 (616)
Q Consensus 188 ~i~~ 191 (616)
++++
T Consensus 138 k~ys 141 (726)
T KOG3621|consen 138 KLYS 141 (726)
T ss_pred EEee
No 385
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=28.08 E-value=4.3e+02 Score=28.25 Aligned_cols=114 Identities=6% Similarity=0.058 Sum_probs=61.6
Q ss_pred eEEEEEC-CCCcEEEEEEEcCCCCCCCCCCCCcEEEecccCcccccccCCccc-----CCCCccCCC--CC-chHHHHhh
Q 007140 483 EMIKYQR-KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVR-----GSPNEFSGM--TP-TSSLIFLA 553 (616)
Q Consensus 483 e~i~~~~-~DG~~l~g~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~-~~~q~la~ 553 (616)
-.+.+.. ..+..+.-|++...+ ++.. .|+++|.-+|+ +++.+- .||-..... .. .+..-|..
T Consensus 50 Gy~~v~~~~~~~~lFyw~~~s~~-~~~~---~Pl~lwlnGGP-----G~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~ 120 (462)
T PTZ00472 50 GYFDIPGNQTDKHYFYWAFGPRN-GNPE---APVLLWMTGGP-----GCSSMFALLAENGPCLMNETTGDIYNNTYSWNN 120 (462)
T ss_pred EEEEeCCCCCCceEEEEEEEcCC-CCCC---CCEEEEECCCC-----cHHHHHhhhccCCCeEEeCCCCceeECCccccc
Confidence 3444432 235678888887664 3322 38888863321 122111 122221110 00 23345778
Q ss_pred CCeEEEE-CCCCCccccCCCccCChhH---HHHHHHHHHHHHHHHHc-CCccCCceEEEe
Q 007140 554 RRFAVLA-GPSIPIIGEGDKLPNDRFV---EQLVSSAEAAVEEVVRR-GVGLPILYLNTT 608 (616)
Q Consensus 554 ~Gy~Vl~-n~R~GS~GyG~~f~~~~~g---~~~~~D~~~~v~~l~~~-~~vD~~ri~~~~ 608 (616)
++..|+. +++ | +||+..-. .++. ....+|+..+++...++ +..-..++.|++
T Consensus 121 ~~~~l~iDqP~-G-~G~S~~~~-~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~G 177 (462)
T PTZ00472 121 EAYVIYVDQPA-G-VGFSYADK-ADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVG 177 (462)
T ss_pred ccCeEEEeCCC-C-cCcccCCC-CCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEe
Confidence 8899999 899 8 67765422 2211 24568888888876655 544456777765
No 386
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=28.00 E-value=42 Score=28.16 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=14.9
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|.++||.+|. |+|
T Consensus 17 ~~~L~~~Gy~Il~rN~r 33 (119)
T TIGR00252 17 RAWLEQKGLKFIAANWN 33 (119)
T ss_pred HHHHHHCCCEEeEEEec
Confidence 5789999999999 999
No 387
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.91 E-value=2.4e+02 Score=29.55 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=36.6
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEEe
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~~ 105 (616)
.+.+.+||||.+-||.-+. +..-+++ +..+.++.+.-...-..-+..+-++.|+.+ .-|++..
T Consensus 68 ~I~SIkFSlDnkilAVQR~--------~~~v~f~--nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRT--------SKTVDFC--NFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred ceeEEEeccCcceEEEEec--------CceEEEE--ecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 4678899999999998875 2334444 544444333322211000122458899975 6677763
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=6.1e+02 Score=25.10 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=27.0
Q ss_pred ceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEEEe
Q 007140 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (616)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (616)
.+++++|+||.+.|+.+.+.. ..|.-++.+|.-.+.+
T Consensus 87 nvS~LTynp~~rtLFav~n~p------------~~iVElt~~Gdlirti 123 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKP------------AAIVELTKEGDLIRTI 123 (316)
T ss_pred cccceeeCCCcceEEEecCCC------------ceEEEEecCCceEEEe
Confidence 478999999999888776543 3566667778766654
No 389
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=27.54 E-value=1.8e+02 Score=29.52 Aligned_cols=15 Identities=13% Similarity=0.104 Sum_probs=13.0
Q ss_pred HHhhCCeEEEE-CCCCC
Q 007140 550 IFLARRFAVLA-GPSIP 565 (616)
Q Consensus 550 ~la~~Gy~Vl~-n~R~G 565 (616)
.|..++|.|+. |.| |
T Consensus 67 ~l~~~~~~vi~~D~~-G 82 (351)
T TIGR01392 67 AIDTDRYFVVCSNVL-G 82 (351)
T ss_pred CcCCCceEEEEecCC-C
Confidence 46679999999 999 8
No 390
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=27.30 E-value=6.1e+02 Score=25.00 Aligned_cols=42 Identities=5% Similarity=-0.036 Sum_probs=26.8
Q ss_pred eec-CCCCceeeeeECCCCcEEEEEeccCCCcccccCcccCccEEEEeCCCceEE
Q 007140 169 KDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (616)
Q Consensus 169 ~~l-~~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (616)
+|| ...+.+.+++|+.+|..++.+.... ..+.++|+...+..
T Consensus 190 TQLIAHDKEV~DIaf~~~s~~~FASvgaD------------GSvRmFDLR~leHS 232 (364)
T KOG0290|consen 190 TQLIAHDKEVYDIAFLKGSRDVFASVGAD------------GSVRMFDLRSLEHS 232 (364)
T ss_pred eEEEecCcceeEEEeccCccceEEEecCC------------CcEEEEEecccccc
Confidence 354 4455667899999887776654322 35777787655443
No 391
>PRK14678 hypothetical protein; Provisional
Probab=27.01 E-value=44 Score=28.11 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=15.0
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|.++||-+|. |+|
T Consensus 17 ~~~L~~~Gy~Il~rN~r 33 (120)
T PRK14678 17 AAYLERCGYTIIARNWR 33 (120)
T ss_pred HHHHHHCCCEEeeeeec
Confidence 5789999999999 999
No 392
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=26.41 E-value=4.1e+02 Score=29.04 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=28.7
Q ss_pred chHHHHhhCCeEEEE-CCCCCccccCCCccC-ChhHHHHHHHHHHHHHHHHHc
Q 007140 546 TSSLIFLARRFAVLA-GPSIPIIGEGDKLPN-DRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 546 ~~~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~-~~~g~~~~~D~~~~v~~l~~~ 596 (616)
...++|+++||-||. +.| . .+...+... .+| . +.+.+|++.+.+.
T Consensus 238 SlVr~lv~qG~~VflIsW~-n-P~~~~r~~~ldDY---v-~~i~~Ald~V~~~ 284 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWR-N-PDKAHREWGLSTY---V-DALKEAVDAVRAI 284 (560)
T ss_pred hHHHHHHHcCCeEEEEeCC-C-CChhhcCCCHHHH---H-HHHHHHHHHHHHh
Confidence 568999999999999 999 4 222211111 333 1 4677777777654
No 393
>PRK14673 hypothetical protein; Provisional
Probab=26.21 E-value=48 Score=28.56 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=14.9
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..||.++||-||. |+|
T Consensus 37 ~~~L~~~Gy~IL~rN~r 53 (137)
T PRK14673 37 LAFLQRAGLALVARNYR 53 (137)
T ss_pred HHHHHHCCCEEeEeEec
Confidence 5789999999999 999
No 394
>PRK12497 hypothetical protein; Reviewed
Probab=26.07 E-value=46 Score=27.95 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=14.8
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|-.+||.||. |+|
T Consensus 17 ~~~L~~~Gy~Il~rN~r 33 (119)
T PRK12497 17 ARYLESKGLRILARNFR 33 (119)
T ss_pred HHHHHHCCCEEEcceec
Confidence 5789999999999 999
No 395
>PRK14686 hypothetical protein; Provisional
Probab=26.04 E-value=48 Score=27.82 Aligned_cols=16 Identities=6% Similarity=0.276 Sum_probs=14.8
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|.++||-||. |+|
T Consensus 16 ~~~L~~~Gy~il~rN~r 32 (119)
T PRK14686 16 VEFLIKKGYTILERNYR 32 (119)
T ss_pred HHHHHHCCCEEEEEEec
Confidence 5789999999999 999
No 396
>PRK14680 hypothetical protein; Provisional
Probab=25.37 E-value=52 Score=28.29 Aligned_cols=16 Identities=13% Similarity=0.112 Sum_probs=15.0
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
.++|.++||.||. |+|
T Consensus 17 ~~~L~~~Gy~Il~rN~r 33 (134)
T PRK14680 17 AALLQRTGHRILARNWR 33 (134)
T ss_pred HHHHHHCCCEEEEeecC
Confidence 5789999999999 999
No 397
>PRK14674 hypothetical protein; Provisional
Probab=25.28 E-value=51 Score=28.29 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=15.0
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
.++|.++||-|+. |+|
T Consensus 16 ~~~L~~~Gy~Il~rN~r 32 (133)
T PRK14674 16 LKLLKEQNYEWVASNYH 32 (133)
T ss_pred HHHHHHCCCEEeEEeee
Confidence 5789999999999 999
No 398
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.12 E-value=2.4e+02 Score=29.64 Aligned_cols=59 Identities=20% Similarity=0.379 Sum_probs=36.3
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
.+...+.||+|+.||+... ...||+++.+-.+...-..... ......+.|.-++-.++.
T Consensus 218 ~i~~iavSpng~~iAl~t~----------~g~l~v~ssDf~~~~~e~~~~~---~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTD----------SGNLWVVSSDFSEKLCEFDTDS---KSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CeEEEEECCCCCEEEEEEC----------CCCEEEEECcccceeEEeecCc---CCCCcEEEEECCCcEEEE
Confidence 4778899999999999964 2568888765443221111110 112458899977654433
No 399
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=25.04 E-value=1.8e+02 Score=18.21 Aligned_cols=31 Identities=10% Similarity=-0.129 Sum_probs=24.0
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCC
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG 72 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g 72 (616)
...++|+|.+++|.|+-. ....|++.+.++.
T Consensus 11 ~~~la~d~~~~~lYw~D~---------~~~~I~~~~~~g~ 41 (43)
T smart00135 11 PNGLAVDWIEGRLYWTDW---------GLDVIEVANLDGT 41 (43)
T ss_pred cCEEEEeecCCEEEEEeC---------CCCEEEEEeCCCC
Confidence 456999999999888743 3478888888764
No 400
>PRK14677 hypothetical protein; Provisional
Probab=24.59 E-value=49 Score=27.14 Aligned_cols=16 Identities=6% Similarity=0.191 Sum_probs=14.8
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
.++|-++||-|+. |+|
T Consensus 11 ~~~L~~~Gy~Il~rN~r 27 (107)
T PRK14677 11 CKFLKKKGYKILERNYR 27 (107)
T ss_pred HHHHHHCCCEEEEEEec
Confidence 5789999999999 999
No 401
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=24.58 E-value=5.3e+02 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.141 Sum_probs=12.5
Q ss_pred HHHHhhCCeEEEE-CCCCCc
Q 007140 548 SLIFLARRFAVLA-GPSIPI 566 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS 566 (616)
...|+ ++|.|+. |.| |.
T Consensus 125 ~~~L~-~~~~vi~~D~r-G~ 142 (402)
T PLN02894 125 FDALA-SRFRVIAIDQL-GW 142 (402)
T ss_pred HHHHH-hCCEEEEECCC-CC
Confidence 34455 4699999 999 63
No 402
>PRK14688 hypothetical protein; Provisional
Probab=24.57 E-value=52 Score=27.70 Aligned_cols=16 Identities=0% Similarity=0.092 Sum_probs=14.8
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|.++||-++. |+|
T Consensus 17 ~~~L~~~Gy~Il~rN~r 33 (121)
T PRK14688 17 AEYLKGMGYSIIQTNCR 33 (121)
T ss_pred HHHHHHCCCEEEEEEee
Confidence 5789999999999 999
No 403
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.50 E-value=6.3e+02 Score=24.17 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=34.3
Q ss_pred ceeEeccCCCCCCCCceEeccccccccceeecCCCceEEEeeeccCccEEE--EEEeCCCCCC-CceEEe
Q 007140 276 DIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRT--WLVCPGSKDV-APRVLF 342 (616)
Q Consensus 276 ~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~l--~~~d~~~~~~-~~~~l~ 342 (616)
..+|.|-+ +++.+.+.+.-.-....+|+-|-+.+++-+. ....+ |.+|..++.. +++.++
T Consensus 139 g~Ly~~~~----~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs---ln~~V~a~dyd~~tG~~snr~~i~ 201 (310)
T KOG4499|consen 139 GELYSWLA----GHQVELIWNCVGISNGLAWDSDAKKFYYIDS---LNYEVDAYDYDCPTGDLSNRKVIF 201 (310)
T ss_pred cEEEEecc----CCCceeeehhccCCccccccccCcEEEEEcc---CceEEeeeecCCCcccccCcceeE
Confidence 46666553 4566655544333456789988776665431 22345 7888887542 345554
No 404
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=24.28 E-value=7.4e+02 Score=24.90 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=36.7
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEEE
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~~ 104 (616)
..+|+|.- .+|.|+ + .+...|..+|.++|+...+...+.- ..++.|. |+.+++.
T Consensus 205 PhSPRWhd--grLwvl-d--------sgtGev~~vD~~~G~~e~Va~vpG~-----~rGL~f~--G~llvVg 258 (335)
T TIGR03032 205 PHSPRWYQ--GKLWLL-N--------SGRGELGYVDPQAGKFQPVAFLPGF-----TRGLAFA--GDFAFVG 258 (335)
T ss_pred CcCCcEeC--CeEEEE-E--------CCCCEEEEEcCCCCcEEEEEECCCC-----Cccccee--CCEEEEE
Confidence 45777763 334554 2 4567888888888888887766542 5688888 8876664
No 405
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=24.13 E-value=5.8e+02 Score=23.64 Aligned_cols=34 Identities=26% Similarity=0.250 Sum_probs=22.0
Q ss_pred ccceE--EccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEe
Q 007140 33 INFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP 76 (616)
Q Consensus 33 ~~~~~--~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~ 76 (616)
...+. ..+++.+|.... ....|+.+|+++|+..-
T Consensus 25 ~~~~~~~~~~~~~~v~~~~----------~~~~l~~~d~~tG~~~W 60 (238)
T PF13360_consen 25 IGGPVATAVPDGGRVYVAS----------GDGNLYALDAKTGKVLW 60 (238)
T ss_dssp CSSEEETEEEETTEEEEEE----------TTSEEEEEETTTSEEEE
T ss_pred CCCccceEEEeCCEEEEEc----------CCCEEEEEECCCCCEEE
Confidence 44444 455677655542 35799999998887543
No 406
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=23.91 E-value=3.6e+02 Score=27.96 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=46.9
Q ss_pred cceeEEeecCCCCCCCCceeeecCCCCCccc----ceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEeccc
Q 007140 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKIN----FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~----~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~ 79 (616)
-+|||+..++. .+-.+|. ++.++... ..+|- -+.|.|=.-.+. ......-++||++|+++=+-..|-.
T Consensus 153 YkD~W~fd~~t----rkweql~-~~g~PS~RSGHRMvawK--~~lilFGGFhd~-nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 153 YKDLWLFDLKT----RKWEQLE-FGGGPSPRSGHRMVAWK--RQLILFGGFHDS-NRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred hhheeeeeecc----chheeec-cCCCCCCCccceeEEee--eeEEEEcceecC-CCceEEeeeeEEEeccceeeeeccC
Confidence 36899999975 6667776 44443211 11111 122222111111 1112445899999999876555533
Q ss_pred CCCcccccccc-ceEEecCCcEEEE
Q 007140 80 SPDICLNAVFG-SFVWVNNSTLLIF 103 (616)
Q Consensus 80 ~~~~~~~~~~~-~~~wspdg~~l~~ 103 (616)
...+. ...-+ ++.-+|+|..+++
T Consensus 225 sga~P-tpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 225 SGAGP-TPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred CCCCC-CCCCcceEEecCCCcEEEE
Confidence 22111 11111 4455688988777
No 407
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=23.55 E-value=51 Score=35.15 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=59.3
Q ss_pred EEEcCCCCCCCCCCCCcEEEecccCcccccccCCcccC--CCCccCCCC---CchHHHHhhCCeEEEECCCCCccccCCC
Q 007140 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRG--SPNEFSGMT---PTSSLIFLARRFAVLAGPSIPIIGEGDK 572 (616)
Q Consensus 498 ~l~~P~~~~~~kk~p~P~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~q~la~~Gy~Vl~n~R~GS~GyG~~ 572 (616)
.|++|+.|.-+.=. -|.+.++-|.--.+..+...+.- =.|+|.+.- -.|-.+|.+.||+|+.--||=..=||++
T Consensus 257 llvlPpSFP~gGME-NPcltF~TpTllaGDrsl~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI~g~~~g~~ 335 (613)
T KOG1047|consen 257 LLVLPPSFPFGGME-NPCLTFVTPTLLAGDRSLVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRIVGRLYGEA 335 (613)
T ss_pred EEEecCCCCccccc-CcceeeecchhhcCCcchhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhhhhhhcchh
Confidence 58999999866432 27777764422111111111100 012443221 1456899999999999224222338888
Q ss_pred ccC----ChhHHHHHHHHHH-------HHHHHHHcCCccCCceEEE
Q 007140 573 LPN----DRFVEQLVSSAEA-------AVEEVVRRGVGLPILYLNT 607 (616)
Q Consensus 573 f~~----~~~g~~~~~D~~~-------~v~~l~~~~~vD~~ri~~~ 607 (616)
++. ..|+. +.+.++ ..+-+++.+.+|||.++-+
T Consensus 336 ~~~f~a~~gw~~--L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~ 379 (613)
T KOG1047|consen 336 YRQFEALIGWRE--LRPSMDLFGETSEFTKLVVKLENVDPDDAFSQ 379 (613)
T ss_pred HHHHHHhcChhh--hhhHHHhcCCCcccchhhhhccCCChHHhhhc
Confidence 875 56654 333333 3344566777999987654
No 408
>PRK14684 hypothetical protein; Provisional
Probab=23.16 E-value=57 Score=27.44 Aligned_cols=16 Identities=0% Similarity=0.017 Sum_probs=14.8
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|..+||.+|. |+|
T Consensus 17 ~~~L~~~Gy~Il~rN~r 33 (120)
T PRK14684 17 CRYLQKQGLSFITKNFR 33 (120)
T ss_pred HHHHHHCCCEEEEEEec
Confidence 5789999999999 999
No 409
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=23.04 E-value=3.2e+02 Score=27.29 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=45.2
Q ss_pred cccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCCCceEecccCCCccccccccceEEecCCcEEEE
Q 007140 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (616)
Q Consensus 32 ~~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~g~~~~lt~~~~~~~~~~~~~~~wspdg~~l~~ 103 (616)
.++.+++-|+.-.|....+. ...|-++++.++....++..-++- ..++-+..|+.||++|+.
T Consensus 137 sINeik~~p~~~qlvls~Sk---------D~svRlwnI~~~~Cv~VfGG~egH-rdeVLSvD~~~~gd~i~S 198 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASK---------DHSVRLWNIQTDVCVAVFGGVEGH-RDEVLSVDFSLDGDRIAS 198 (385)
T ss_pred cchhhhcCCCCCcEEEEecC---------CceEEEEeccCCeEEEEecccccc-cCcEEEEEEcCCCCeeec
Confidence 68899999999887777653 367777799999888886332211 233557899999997665
No 410
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=22.81 E-value=1.7e+02 Score=31.07 Aligned_cols=18 Identities=33% Similarity=0.848 Sum_probs=13.7
Q ss_pred ccceEEccCCCeEEEEEe
Q 007140 33 INFVSWSPDGKRIAFSVR 50 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~ 50 (616)
+..+.||+||+++|++..
T Consensus 147 vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S
T ss_pred CcEEEEECCCCEEEEEeC
Confidence 578999999999999963
No 411
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=22.77 E-value=1.2e+02 Score=31.07 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=14.3
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCC
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDK 572 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~ 572 (616)
...|+ ++|.|+. |.| | ||..
T Consensus 108 ~~~L~-~~~~via~Dl~-G---~G~S 128 (360)
T PLN02679 108 IGVLA-KNYTVYAIDLL-G---FGAS 128 (360)
T ss_pred HHHHh-cCCEEEEECCC-C---CCCC
Confidence 34454 5899999 999 5 5653
No 412
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=22.44 E-value=8e+02 Score=24.64 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=25.5
Q ss_pred ccccceeecCCCceEEEeeec---cCccEEEEEEeCCC
Q 007140 299 LRFRSVSWCDDSLALVNETWY---KTSQTRTWLVCPGS 333 (616)
Q Consensus 299 ~~~~~~~wspDg~~l~~~~~~---~~~~~~l~~~d~~~ 333 (616)
..++.+.+-+|+..|+.++.. .....+||.+++..
T Consensus 215 ~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 215 NGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 456778899999887777642 23466999999864
No 413
>PRK14682 hypothetical protein; Provisional
Probab=22.35 E-value=53 Score=27.48 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=14.9
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|.++||-++. |+|
T Consensus 15 ~~~L~~~Gy~Il~rN~r 31 (117)
T PRK14682 15 CKFLHTQALEILAHNFK 31 (117)
T ss_pred HHHHHHCCCEEeeeeEE
Confidence 5789999999999 999
No 414
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=22.24 E-value=3.3e+02 Score=27.52 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=11.7
Q ss_pred HhhCCeEEEE-CCCCC
Q 007140 551 FLARRFAVLA-GPSIP 565 (616)
Q Consensus 551 la~~Gy~Vl~-n~R~G 565 (616)
|.+++|-|+. |.| |
T Consensus 95 L~~~~~~Vi~~Dl~-G 109 (343)
T PRK08775 95 LDPARFRLLAFDFI-G 109 (343)
T ss_pred cCccccEEEEEeCC-C
Confidence 4467899999 999 7
No 415
>PRK03204 haloalkane dehalogenase; Provisional
Probab=21.84 E-value=1.5e+02 Score=29.10 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=24.0
Q ss_pred hhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHHc
Q 007140 552 LARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVRR 596 (616)
Q Consensus 552 a~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~~ 596 (616)
..++|.|+. |.| | +|..=...+. ....+++.+.+.+++++
T Consensus 57 l~~~~~vi~~D~~-G---~G~S~~~~~~-~~~~~~~~~~~~~~~~~ 97 (286)
T PRK03204 57 LRDRFRCVAPDYL-G---FGLSERPSGF-GYQIDEHARVIGEFVDH 97 (286)
T ss_pred HhCCcEEEEECCC-C---CCCCCCCCcc-ccCHHHHHHHHHHHHHH
Confidence 356799999 999 6 4432111110 12457777777777765
No 416
>PRK14685 hypothetical protein; Provisional
Probab=21.71 E-value=66 Score=28.93 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=14.9
Q ss_pred HHHHhhCCeEEEE-CCC
Q 007140 548 SLIFLARRFAVLA-GPS 563 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R 563 (616)
..+|..+||-||. |||
T Consensus 53 a~yL~~~Gy~IL~RN~R 69 (177)
T PRK14685 53 LRWLARQGLRPLARNLR 69 (177)
T ss_pred HHHHHHCCCEEeEeeec
Confidence 5789999999999 999
No 417
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=21.44 E-value=4.3e+02 Score=24.95 Aligned_cols=46 Identities=2% Similarity=-0.074 Sum_probs=30.7
Q ss_pred HHHHhhCCeEEEE-CCCCCccccCCCccCChhHHHHHHHHHHHHHHHHH
Q 007140 548 SLIFLARRFAVLA-GPSIPIIGEGDKLPNDRFVEQLVSSAEAAVEEVVR 595 (616)
Q Consensus 548 ~q~la~~Gy~Vl~-n~R~GS~GyG~~f~~~~~g~~~~~D~~~~v~~l~~ 595 (616)
+..++..||-+|. ||| |-.---..|--+++. .+.+|+-..++++-.
T Consensus 55 A~~~e~~gis~fRfDF~-GnGeS~gsf~~Gn~~-~eadDL~sV~q~~s~ 101 (269)
T KOG4667|consen 55 AKALEKEGISAFRFDFS-GNGESEGSFYYGNYN-TEADDLHSVIQYFSN 101 (269)
T ss_pred HHHHHhcCceEEEEEec-CCCCcCCccccCccc-chHHHHHHHHHHhcc
Confidence 4578899999999 999 732111112224443 355999999988865
No 418
>KOG4328 consensus WD40 protein [Function unknown]
Probab=21.43 E-value=9.7e+02 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=19.0
Q ss_pred ceeeeeECCCCc-EEEEEeccCCCcccccCcccCccEEEEeCC
Q 007140 176 VYTAVEPSPDQK-YVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (616)
Q Consensus 176 ~~~~~~~SpDg~-~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (616)
.+..++|.|--. .++.+... ..+|-+||+.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK------------~G~VG~Wn~~ 218 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDK------------GGQVGLWNFG 218 (498)
T ss_pred ceEEEEecccCcceEEEEccC------------CCcEEEEecC
Confidence 356788999643 45444332 3478889885
No 419
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=21.36 E-value=63 Score=25.44 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.4
Q ss_pred ccceEEccCCCeEEEEEeec
Q 007140 33 INFVSWSPDGKRIAFSVRVD 52 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~ 52 (616)
...-.|||||+.++|-...+
T Consensus 15 ~AAGefs~DGkLv~Ykgdm~ 34 (109)
T COG4831 15 MAAGEFSPDGKLVEYKGDMP 34 (109)
T ss_pred eEeceeCCCCceEEeeCCCC
Confidence 56779999999999987553
No 420
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=7.5e+02 Score=23.92 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=28.2
Q ss_pred ccceEEEEeCC-C-Ceee---cCCCCceeeeeECCCCcEEEEEeccC
Q 007140 155 TTAQLVLGSLD-G-TAKD---FGTPAVYTAVEPSPDQKYVLITSMHR 196 (616)
Q Consensus 155 ~~~~l~~~d~~-g-~~~~---l~~~~~~~~~~~SpDg~~i~~~~~~~ 196 (616)
...+|++++++ + .+.. +...+...+++||++-..++++....
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD 82 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD 82 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC
Confidence 45789999995 3 2332 23334556899999988777776543
No 421
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=20.80 E-value=7.9e+02 Score=23.98 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=22.4
Q ss_pred ccccccceeecCCCce-EEEeeeccCccEEEEEEeCCCC
Q 007140 297 LDLRFRSVSWCDDSLA-LVNETWYKTSQTRTWLVCPGSK 334 (616)
Q Consensus 297 ~~~~~~~~~wspDg~~-l~~~~~~~~~~~~l~~~d~~~~ 334 (616)
..+.+....||+-|.. |++-+ .....+.++|+.+.
T Consensus 249 hnGa~R~c~Fsl~g~lDLLf~s---Ehfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 249 HNGAFRVCRFSLYGLLDLLFIS---EHFSRVHVVDTRNY 284 (344)
T ss_pred CCCceEEEEecCCCcceEEEEe---cCcceEEEEEcccC
Confidence 4456777889987654 33322 13457888999874
No 422
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=20.06 E-value=3.3e+02 Score=28.04 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=11.6
Q ss_pred HhhCCeEEEE-CCCCC
Q 007140 551 FLARRFAVLA-GPSIP 565 (616)
Q Consensus 551 la~~Gy~Vl~-n~R~G 565 (616)
+..++|.|+. |.+ |
T Consensus 87 l~~~~~~vi~~Dl~-G 101 (379)
T PRK00175 87 IDTDRYFVICSNVL-G 101 (379)
T ss_pred cCccceEEEeccCC-C
Confidence 3367999999 988 7
No 423
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=20.05 E-value=3.9e+02 Score=28.14 Aligned_cols=63 Identities=16% Similarity=-0.109 Sum_probs=32.5
Q ss_pred ccceEEccCCCeEEEEEeeccccccCCCceeEEEEECCC-CceEecccCC--------------CccccccccceEEecC
Q 007140 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESP--------------DICLNAVFGSFVWVNN 97 (616)
Q Consensus 33 ~~~~~~SPDG~~iaf~~~~~~~~~~~~~~~~l~v~~~~~-g~~~~lt~~~--------------~~~~~~~~~~~~wspd 97 (616)
+..+.+|.|.++|.+.. -...+|..+|+.. -+++++-+.. ...+....+.++-|-|
T Consensus 314 itDI~iSlDDrfLYvs~---------W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~D 384 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSN---------WLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLD 384 (461)
T ss_dssp ---EEE-TTS-EEEEEE---------TTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TT
T ss_pred eEeEEEccCCCEEEEEc---------ccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccC
Confidence 67889999999876653 3467888999875 3444442211 0011122357789999
Q ss_pred CcEEEEE
Q 007140 98 STLLIFT 104 (616)
Q Consensus 98 g~~l~~~ 104 (616)
|++|+++
T Consensus 385 GkRlYvT 391 (461)
T PF05694_consen 385 GKRLYVT 391 (461)
T ss_dssp SSEEEEE
T ss_pred CeEEEEE
Confidence 9999997
Done!