BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007141
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/566 (43%), Positives = 333/566 (58%), Gaps = 27/566 (4%)
Query: 11 PPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPF 70
P + D +G F L + + G ++ L V G+ A L AS+SFD P
Sbjct: 200 PVRYGHPDXSQGXTFHGRL---AAVNEGGSLKVDADGLHVXGATCATLYFSASTSFD-PS 255
Query: 71 INPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRS--PKDIVTD 128
S ++DP+ ++ +++I Y ++ RHL+DY KLF+RVS+ L S P D TD
Sbjct: 256 TGASCLERDPSLRTIETIKAICKRGYKEIVNRHLEDYTKLFNRVSLHLGESIAPADXSTD 315
Query: 129 TCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDL 188
+R+K + + D LVELLFQ+GRYL I+SSRPGTQ ANLQGIWNE+
Sbjct: 316 -------------QRIKEYGS-RDLGLVELLFQYGRYLXIASSRPGTQPANLQGIWNEET 361
Query: 189 SPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIH 248
W S +NIN E NYW + CNL+E +PL F+ L+ NG KTA++NY A GWV H
Sbjct: 362 RAPWSSNYTLNINAEXNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAH 421
Query: 249 HKTDIWAKSSA----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGC 304
H D+W +++ G VWA WP GG WL HLWEHY + D +L AYP+ +
Sbjct: 422 HNADLWGQTAPVGDFGHGDPVWAFWPXGGVWLTQHLWEHYTFGEDEAYLRDTAYPIXKEA 481
Query: 305 ASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAA 364
A F LDWLIE GYL T+PSTSPE F + K VS ++T D+++I E F I AA
Sbjct: 482 ALFCLDWLIENEAGYLVTSPSTSPEQRFRIGE-KGYAVSSATTXDLSLIAECFDNCIQAA 540
Query: 365 EVLEKNEDALVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHT 424
+ L +ED V+ + + RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG
Sbjct: 541 KRLSIDED-FVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRL 599
Query: 425 ITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEH 484
IT + P+L +AA+ +L+ RG+EG GWS+ WK +LWAR D R++ L+ +
Sbjct: 600 ITEQSAPNLFEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNXLTLIKEDE 659
Query: 485 EKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVK 544
GG+Y+NLF AHPPFQID NF TA +AE L+QS L LPALP D W G VK
Sbjct: 660 SXQHRGGVYANLFGAHPPFQIDGNFSATAGIAEXLLQSHQGYLEFLPALP-DSWKDGYVK 718
Query: 545 GLKARGGETVSICWKDGDLHEVGIYS 570
GL+ RGG V + W +G L +V I S
Sbjct: 719 GLRGRGGYEVDLAWTNGALVKVEIVS 744
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 224 bits (572), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 186/674 (27%), Positives = 301/674 (44%), Gaps = 118/674 (17%)
Query: 22 GIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVASSSFDG--PFINPSDSKK 78
G+ +++ +++ + + GT+S D LKV + L + A++ + P ++
Sbjct: 239 GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAAATDYKQKYPSYRTGETAA 298
Query: 79 DPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTV 138
+ + +Q N Y+ + H+DD+ ++ RV I L +S + D +
Sbjct: 299 EVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHSSDGAVAT----DAL 354
Query: 139 PSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-ANLQGIW------NEDLSPT 191
A + S T + L L++++GRYL I SSR +Q+ +NLQGIW N +
Sbjct: 355 LKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTP 414
Query: 192 WDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--------- 242
W S H+N+NL+MNYW + N+ E EPL +++ L G TA+V A
Sbjct: 415 WGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTP 474
Query: 243 ----SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAY 298
G++ H + + ++ + W P W+ +++E Y Y+ D L+ R Y
Sbjct: 475 IGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVY 532
Query: 299 PLLEGCASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIR 354
LL+ + F +++++ L T + SPE + DG +Y S++ ++
Sbjct: 533 ALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTDGN----TYESSLVWQMLN 588
Query: 355 EVFSAIIS--------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAE 392
+ A + +A+ KN+ DA + KSL L+P ++ +
Sbjct: 589 DAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGD 646
Query: 393 DGSIMEWAQDF-----KDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEK 439
G I EW + KD HRH+SHL GLFPG ITI+ N + AA+
Sbjct: 647 SGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKT 705
Query: 440 TLQKRGEEG------PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 493
+L+ R +G GW+I + WAR D Y++V E + +Y
Sbjct: 706 SLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMY 754
Query: 494 SNLFAAHPPFQIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGC 542
+NLF H PFQID NFG T+ V EML+QS +N +LPALP D W+ G
Sbjct: 755 ANLFDYHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGS 813
Query: 543 VKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 602
V GL ARG TV WK+G EV + SN +G V ++AG +
Sbjct: 814 VSGLVARGNFTVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNY 859
Query: 603 NRQLKCTNLHQSIV 616
+ T ++ +V
Sbjct: 860 EVKNGDTAVNAKVV 873
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 185/674 (27%), Positives = 300/674 (44%), Gaps = 118/674 (17%)
Query: 22 GIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVASSSFDG--PFINPSDSKK 78
G+ +++ +++ + + GT+S D LKV + L + A++ + P ++
Sbjct: 239 GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAAATDYKQKYPSYRTGETAA 298
Query: 79 DPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTV 138
+ + +Q N Y+ + H+DD+ ++ RV I L +S + D +
Sbjct: 299 EVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHSSDGAVAT----DAL 354
Query: 139 PSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-ANLQGIW------NEDLSPT 191
A + S T + L L++++GRYL I SSR +Q+ +NLQGIW N +
Sbjct: 355 LKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTP 414
Query: 192 WDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--------- 242
W S H+N+NL+MNYW + N+ E EPL +++ L G TA+V A
Sbjct: 415 WGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTP 474
Query: 243 ----SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAY 298
G++ H + + ++ + W P W+ +++E Y Y+ D L+ R Y
Sbjct: 475 IGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVY 532
Query: 299 PLLEGCASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIR 354
LL+ + F +++++ L T + SP + DG +Y S++ ++
Sbjct: 533 ALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPAQGPLGTDGN----TYESSLVWQMLN 588
Query: 355 EVFSAIIS--------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAE 392
+ A + +A+ KN+ DA + KSL L+P ++ +
Sbjct: 589 DAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGD 646
Query: 393 DGSIMEWAQDF-----KDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEK 439
G I EW + KD HRH+SHL GLFPG ITI+ N + AA+
Sbjct: 647 SGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKT 705
Query: 440 TLQKRGEEG------PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 493
+L+ R +G GW+I + WAR D Y++V E + +Y
Sbjct: 706 SLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMY 754
Query: 494 SNLFAAHPPFQIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGC 542
+NLF H PFQID NFG T+ V EML+QS +N +LPALP D W+ G
Sbjct: 755 ANLFDYHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGS 813
Query: 543 VKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 602
V GL ARG TV WK+G EV + SN +G V ++AG +
Sbjct: 814 VSGLVARGNFTVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNY 859
Query: 603 NRQLKCTNLHQSIV 616
+ T ++ +V
Sbjct: 860 EVKNGDTAVNAKVV 873
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 221 bits (564), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 185/674 (27%), Positives = 300/674 (44%), Gaps = 118/674 (17%)
Query: 22 GIQFSAILEIKISDDRGTISALED-KKLKVEGSDWAVLLLVASSSFDG--PFINPSDSKK 78
G+ +++ +++ + + GT+S D LKV + L + A++ + P ++
Sbjct: 238 GLLYNSQIKVVLDNGEGTLSEGSDGASLKVSDAKAVTLYIAAATDYKQKYPSYRTGETAA 297
Query: 79 DPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTV 138
+ + +Q N Y+ + H+DD+ ++ RV I L +S + D +
Sbjct: 298 EVNTRVAKVVQDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHSSDGAVAT----DAL 353
Query: 139 PSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQV-ANLQGIW------NEDLSPT 191
A + S T + L L++++GRYL I SSR +Q+ +NLQGIW N +
Sbjct: 354 LKAYQRGSATTAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTP 413
Query: 192 WDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--------- 242
W S H+N+NL+MNYW + N+ E EPL +++ L G TA+V A
Sbjct: 414 WGSDFHMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTP 473
Query: 243 ----SGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAY 298
G++ H + + ++ + W P W+ +++E Y Y+ D L+ R Y
Sbjct: 474 IGEGEGYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVY 531
Query: 299 PLLEGCASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIR 354
LL+ + F +++++ L T + SPE + DG +Y S++ ++
Sbjct: 532 ALLKEESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTDGN----TYESSLVWQMLN 587
Query: 355 EVFSAIIS--------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAE 392
+ A + +A+ KN+ DA + KSL L+P ++ +
Sbjct: 588 DAIEAAKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGD 645
Query: 393 DGSIMEWAQDF-----KDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEK 439
G I EW + KD HRH+SHL GLFPG ITI+ N + AA+
Sbjct: 646 SGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKT 704
Query: 440 TLQKRGEEG------PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 493
+L+ R +G GW+I + WAR D Y++V E + +Y
Sbjct: 705 SLRYRCFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMY 753
Query: 494 SNLFAAHPPFQIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGC 542
+NLF H PFQI NFG T+ V EML+QS +N +LPALP D W+ G
Sbjct: 754 ANLFDYHAPFQIAGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGS 812
Query: 543 VKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 602
V GL ARG TV WK+G EV + SN +G V ++AG +
Sbjct: 813 VSGLVARGNFTVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNY 858
Query: 603 NRQLKCTNLHQSIV 616
+ T ++ +V
Sbjct: 859 EVKNGDTAVNAKVV 872
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 515 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 567
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 515 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 567
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 515 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 567
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 515 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 567
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 515 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 567
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 310 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 356
>pdb|2Z4T|A Chain A, Crystal Structure Of Vibrionaceae Photobacterium Sp.
Jt-Ish-224 2,6- Sialyltransferase In A Ternary Complex
With Donor Product Cmp And Accepter Substrate Lactose
Length = 514
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 457 TALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHP 501
T +WA H++E+ + + N E H+ G Y F HP
Sbjct: 362 TTVWAGNHEREYYAKQQINVINNAINESSPHYLGNSYDLFFKGHP 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,437,603
Number of Sequences: 62578
Number of extensions: 880821
Number of successful extensions: 2296
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2265
Number of HSP's gapped (non-prelim): 12
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)