Query 007141
Match_columns 616
No_of_seqs 226 out of 1183
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 19:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13807 maltose phosphorylase 100.0 4.4E-52 9.6E-57 476.6 46.0 461 48-602 245-756 (756)
2 COG1554 ATH1 Trehalose and mal 100.0 5.3E-50 1.2E-54 446.2 39.5 442 49-577 243-750 (772)
3 PF03632 Glyco_hydro_65m: Glyc 100.0 3.5E-41 7.7E-46 358.2 16.6 320 162-525 2-362 (370)
4 KOG4125 Acid trehalase [Carboh 99.9 1.4E-23 2.9E-28 218.1 24.4 370 84-519 210-598 (682)
5 TIGR01577 oligosac_amyl oligos 98.6 1.6E-05 3.4E-10 91.8 26.1 327 82-479 208-575 (616)
6 PF05592 Bac_rhamnosid: Bacter 98.0 2.3E-05 4.9E-10 88.4 10.5 262 274-575 207-504 (509)
7 PF14498 Glyco_hyd_65N_2: Glyc 97.6 0.00011 2.3E-09 74.7 5.8 47 19-68 189-235 (236)
8 COG3459 Cellobiose phosphoryla 97.4 0.21 4.5E-06 58.9 29.4 102 273-386 671-794 (1056)
9 PF04685 DUF608: Protein of un 97.3 0.0002 4.2E-09 77.3 4.3 169 204-386 21-203 (365)
10 COG3387 SGA1 Glucoamylase and 97.2 0.017 3.8E-07 66.4 19.0 275 174-479 262-566 (612)
11 PF06202 GDE_C: Amylo-alpha-1, 97.0 0.043 9.4E-07 59.5 18.7 282 210-519 44-369 (370)
12 TIGR01535 glucan_glucosid gluc 96.7 0.14 3E-06 59.4 20.2 237 54-386 197-439 (648)
13 COG3408 GDB1 Glycogen debranch 96.3 0.15 3.2E-06 59.2 17.7 292 211-552 298-637 (641)
14 PF03633 Glyco_hydro_65C: Glyc 96.2 0.011 2.3E-07 45.7 5.1 41 531-577 1-42 (54)
15 PRK10137 alpha-glucosidase; Pr 95.2 1.1 2.5E-05 52.7 18.8 44 277-321 423-466 (786)
16 COG4354 Predicted bile acid be 94.6 0.25 5.4E-06 55.1 10.9 193 155-369 322-531 (721)
17 PF10222 DUF2152: Uncharacteri 94.2 0.082 1.8E-06 60.3 6.2 77 45-122 242-322 (604)
18 PRK13271 treA trehalase; Provi 91.1 6 0.00013 45.3 15.7 35 275-311 214-248 (569)
19 TIGR01561 gde_arch glycogen de 90.9 3.3 7.1E-05 47.6 13.4 94 272-370 349-449 (575)
20 PRK13272 treA trehalase; Provi 87.1 23 0.00051 40.4 16.5 35 275-311 215-249 (542)
21 PLN02567 alpha,alpha-trehalase 79.3 3.8 8.2E-05 46.9 6.4 35 275-310 207-241 (554)
22 PF01204 Trehalase: Trehalase; 71.6 3.9 8.5E-05 46.4 3.9 35 275-310 183-217 (512)
23 TIGR01531 glyc_debranch glycog 63.5 2.7E+02 0.0059 35.6 17.2 39 272-310 1092-1152(1464)
24 KOG2119 Predicted bile acid be 51.3 30 0.00065 40.2 6.0 84 277-370 563-647 (879)
25 KOG0602 Neutral trehalase [Car 48.4 34 0.00073 39.3 5.9 41 275-316 240-280 (600)
26 COG3537 Putative alpha-1,2-man 42.1 1.8E+02 0.004 33.8 10.3 62 44-117 252-313 (768)
27 KOG3778 Uncharacterized conser 37.4 1.7E+02 0.0036 32.5 8.7 28 93-121 287-314 (603)
28 PF11344 DUF3146: Protein of u 35.6 72 0.0016 26.5 4.4 64 536-606 12-79 (80)
29 PRK09744 DNA-binding transcrip 29.8 23 0.00051 29.2 0.7 42 355-397 8-51 (75)
30 TIGR00756 PPR pentatricopeptid 29.6 1.2E+02 0.0026 19.4 4.3 23 456-478 6-28 (35)
31 PRK13270 treF trehalase; Provi 28.2 1.1E+02 0.0024 35.1 6.0 33 275-310 226-258 (549)
32 PF13428 TPR_14: Tetratricopep 27.6 1.2E+02 0.0026 21.7 4.1 23 456-478 7-29 (44)
33 PF07971 Glyco_hydro_92: Glyco 27.4 2.1E+02 0.0045 32.6 7.9 48 58-117 16-64 (502)
34 PF00515 TPR_1: Tetratricopept 26.6 1.3E+02 0.0027 19.8 3.9 23 456-478 7-29 (34)
35 PF13041 PPR_2: PPR repeat fam 25.6 1.4E+02 0.0031 21.7 4.4 23 456-478 9-31 (50)
36 PF14853 Fis1_TPR_C: Fis1 C-te 23.7 1.3E+02 0.0027 23.2 3.7 28 456-484 7-34 (53)
37 PF06824 DUF1237: Protein of u 23.1 2.3E+02 0.0051 31.4 7.0 112 273-384 130-267 (424)
38 PF13374 TPR_10: Tetratricopep 22.7 1.6E+02 0.0034 19.9 4.0 27 453-479 5-31 (42)
39 PF07719 TPR_2: Tetratricopept 21.7 2.1E+02 0.0045 18.4 4.3 23 456-478 7-29 (34)
40 PF13176 TPR_7: Tetratricopept 21.1 1.8E+02 0.0039 19.8 3.9 23 456-478 5-27 (36)
No 1
>PRK13807 maltose phosphorylase; Provisional
Probab=100.00 E-value=4.4e-52 Score=476.59 Aligned_cols=461 Identities=16% Similarity=0.120 Sum_probs=341.8
Q ss_pred EEEeCCcEEEE--EEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEEecCCCCCc
Q 007141 48 LKVEGSDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDI 125 (616)
Q Consensus 48 l~v~~a~~v~l--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gy~~l~~~H~~~w~~lw~r~~i~L~~~~~~~ 125 (616)
+.++..+.++| ++++.|+.+. . ..++.+.|.+.++.+...||+.|+++|++.|+++|++++|+|+|++.
T Consensus 245 ~~l~~g~~~~leK~v~v~ts~d~--~-----~~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~~-- 315 (756)
T PRK13807 245 ADVKAGETVTLEKRVIVVTSRDY--E-----ESELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDDA-- 315 (756)
T ss_pred EEEcCCCEEEEEEEEEEEECCCC--C-----chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCHH--
Confidence 34567777766 6677777542 1 34466778888888888899999999999999999999999987643
Q ss_pred ccccCCccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHhhhcCC--CCCCCCCCccccCCCCCCCCCCCcccccccc
Q 007141 126 VTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSR--PGTQVANLQGIWNEDLSPTWDSAPHVNINLE 203 (616)
Q Consensus 126 ~~~~~~~~~~~~~ptd~rl~~~~~~~d~~l~~l~f~~grYllisssR--~g~~P~~LqGiW~~~~~~~W~g~y~~niN~q 203 (616)
.|+.. +|..|+|+++.+ .+.++.+-.|+-.+ .|.||++ ||+|
T Consensus 316 ---------------~q~al---------------r~~~fhL~~s~~~~~~~~~i~a~GLsge----~Y~Gh~F--WDtE 359 (756)
T PRK13807 316 ---------------AQQGI---------------RFNIFQLFSTYYGEDARLNIGPKGFTGE----KYGGATY--WDTE 359 (756)
T ss_pred ---------------HHHHH---------------HHHHHHHHhccCCCCCCCCcCCCCCCcC----CcCCeee--eccc
Confidence 34433 466667766642 22222223343222 6899766 5699
Q ss_pred chhccc-ccCCchHhhHHHHHHHHHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCccccc---CccCHHHHHHH
Q 007141 204 MNYWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWLCTH 279 (616)
Q Consensus 204 m~ywp~-~~~nl~E~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~t~p~~~~~~~~~---w~~~~awla~~ 279 (616)
++++|+ +..+.||+++.|++||++.|+.||++|++ +|++||+|||.+. -|. +.++.|.. -.+.+++||++
T Consensus 360 ~f~lP~~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~----E~~~~w~~~~~e~HI~adIaya 433 (756)
T PRK13807 360 AYCVPFYLATADPEVTRNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGI----ECHNEWEITFEEIHRNGAIAYA 433 (756)
T ss_pred hhhhhhhhhccCHHHHHHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCC----cCCCCcCCCceeEechHHHHHH
Confidence 999999 56899999999999999999999999999 7999999998863 221 11223321 13468999999
Q ss_pred HHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC-CCeEEECCCCCC-CCCccCCCCCccccccCcHHHHHHHHHHH
Q 007141 280 LWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVF 357 (616)
Q Consensus 280 lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~ll 357 (616)
+|+||+.|+|.+||++.++|||.|+|+||.+++.+++ +|+|+|..+++| |++. .++||+|||.|++++|
T Consensus 434 ~~~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~---------~vdNNayTN~ma~~~l 504 (756)
T PRK13807 434 IYNYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYEN---------NVNNNWYTNYIAAWTL 504 (756)
T ss_pred HHHHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCC---------CCCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999865 799999999999 8873 5889999999999999
Q ss_pred HHHHHHHHH--------hCCCcHHHHHHHHHHcCCCC-CCCcCCCCc---------eeeeccC-CCC---CCCCCCccc-
Q 007141 358 SAIISAAEV--------LEKNEDALVEKVLKSLPRLR-PTKIAEDGS---------IMEWAQD-FKD---PEVHHRHLS- 414 (616)
Q Consensus 358 ~~~~~a~~~--------Lg~~~~~~~~~w~~~~~~L~-p~~i~~~G~---------l~ew~~~-~~~---~~~~hRh~S- 414 (616)
+.++++++. |+++ +++.++|++++++|. |+. ++.|. +++|+.+ +.. +...|.|..
T Consensus 505 ~~A~~~~~~l~~~~~~~l~~~-~~e~~~w~~ia~~~~lp~~-~~~gi~~q~dgy~~l~~~d~~~~~~~~~~~~~~~~~~~ 582 (756)
T PRK13807 505 EYTLENLDKVKKEAPARLNVT-EEELAKWQDIVDKMYLPYD-EELGIFVQHDGFLDKDLRPVSDLPPDQRPINQNWSWDR 582 (756)
T ss_pred HHHHHHHHHhchhhHHHhcCC-HHHHHHHHHHHhCeEeccc-CCCCEEEccCCccccccCchhhcccccCCcccccCHHH
Confidence 999998864 4555 678889999999999 654 23342 2333211 110 011122211
Q ss_pred -----------cccccCCCCCCCCCCCHHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCChhHHHHHHHHHHhccCCc
Q 007141 415 -----------HLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPE 483 (616)
Q Consensus 415 -----------hL~~l~P~~~i~~~~~p~l~~aa~~tl~~Rg~~~tgws~a~~~~~~ARLgd~~~A~~~l~~~l~~~~~~ 483 (616)
-++.+||... ..+++.+.....+++.|+.|+|++|++++++++|++|+.++|+++|++.+. +|++
T Consensus 583 i~~~qviKQADvvll~yll~~---~f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~~a~~-~Dl~ 658 (756)
T PRK13807 583 ILRSPFIKQADVLQGIYFFED---RFTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYLRTAR-LDLD 658 (756)
T ss_pred HhcccEecHHHHHHHhccCCC---CCCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhh
Confidence 1345566542 256788888889999999999999999999999999999999999999988 4554
Q ss_pred ccccCCCCcccccccCCCCcccCcchhHHHHHHHHHhhhc------CCeEEeCCCCCcccccCceeeceEeecc-EEEEE
Q 007141 484 HEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQST------LNDLYLLPALPWDKWSSGCVKGLKARGG-ETVSI 556 (616)
Q Consensus 484 ~~~~~~~~~~~nl~~~h~pfqidgn~G~~agi~emLlqs~------~g~i~llPalP~~~W~~gs~~gLrarG~-~~V~~ 556 (616)
+.. +.+-.++ +.++++|++.++++.. .+.|+|.|.|| +.|+..+|+ ++.||. +.|.+
T Consensus 659 ~~~---~~t~~Gi-----------H~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~rG~~l~v~i 722 (756)
T PRK13807 659 NYN---NDTEDGL-----------HITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INFRGRLLKVKV 722 (756)
T ss_pred hcc---CCCCcch-----------hhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEECCeEEEEEE
Confidence 331 1221221 4588899999998854 45799999999 999999998 999998 45555
Q ss_pred EEeCCeEEEEEEEeCCCCCcccceeeeecCCeEEEEEcCCCcEEEE
Q 007141 557 CWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 602 (616)
Q Consensus 557 ~w~~g~~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~~G~~~~i 602 (616)
+ ..+ ++|+...|..++ |.+.+ ..+.+.+|++.++
T Consensus 723 ~--~~~---~~i~~~~g~~l~---i~v~g----~~~~l~~g~~~~~ 756 (756)
T PRK13807 723 D--KQE---VTIELLSGEPLT---IEVYG----KKVELKKGVTVTV 756 (756)
T ss_pred E--CCE---EEEEEcCCCcEE---EEECC----EEEEEcCCcEeeC
Confidence 4 444 355555555566 44443 2455668887764
No 2
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-50 Score=446.21 Aligned_cols=442 Identities=17% Similarity=0.192 Sum_probs=323.4
Q ss_pred EEeCCcEEEE--EEEeeecCCCCCCCCCCCCCChHHHHHH-HHHHhhcCCHHHHHHHHHHHHHhhhcceeEEecCCCCCc
Q 007141 49 KVEGSDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMS-ALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDI 125 (616)
Q Consensus 49 ~v~~a~~v~l--~~~~~t~~~~~~~~~~~~~~~~~~~~~~-~l~~a~~~gy~~l~~~H~~~w~~lw~r~~i~L~~~~~~~ 125 (616)
.++...+|+| ++++.|+.+. . ..+....+.+ .+..+.+.+|++|+++|++.|.++|++++|+|+|+++
T Consensus 243 ~l~~~q~v~leK~v~v~tS~d~--~-----~~e~~~~~~~~~~~~~~~~~y~~Ll~~h~~aW~~~W~~adI~Iegd~~-- 313 (772)
T COG1554 243 LLKAGQTVTLEKYVTVFTSRDR--E-----LDELLNAALEALLKLASKGGYEKLLAAHKAAWDDLWEKADIEIEGDPE-- 313 (772)
T ss_pred EecCCCeEEEEEEEEEEecccc--c-----hhhhhhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHhcCEEecCCHH--
Confidence 3456666776 7777777642 1 1222333333 4566777899999999999999999999999998754
Q ss_pred ccccCCccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHhhhcCC--CC--CC-CCCCccccCCCCCCCCCCCccccc
Q 007141 126 VTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSR--PG--TQ-VANLQGIWNEDLSPTWDSAPHVNI 200 (616)
Q Consensus 126 ~~~~~~~~~~~~~ptd~rl~~~~~~~d~~l~~l~f~~grYllisssR--~g--~~-P~~LqGiW~~~~~~~W~g~y~~ni 200 (616)
+|+.. +|++|+|.++++ .- ++ |.+|+|. +|+|| ..|
T Consensus 314 ---------------~Q~av---------------RfnLFhL~~~~~~~d~rlsIgaKGltGe-------gY~Gh--vfW 354 (772)
T COG1554 314 ---------------AQQAV---------------RFNLFHLLQTTPGHDERLSIGAKGLTGE-------GYGGH--VFW 354 (772)
T ss_pred ---------------HHHHH---------------HHHHHHHHhhccCcccCCCCCCCCcCcc-------ccCCe--eee
Confidence 45544 466667766653 11 23 4456663 78996 456
Q ss_pred cccchhcccccCCchHhhHHHHHHHHHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCccccc---------Cc-
Q 007141 201 NLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---------WP- 270 (616)
Q Consensus 201 N~qm~ywp~~~~nl~E~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~t~p~~~~~~~~~---------w~- 270 (616)
+||++..|++..+.|++++.|+.||++.++.||++|++ +|++||+|||.|-.-|. ...+.|.. |+
T Consensus 355 DTEif~lP~l~~t~P~vArnLL~YR~~~L~~Ak~nA~~-~G~~GAlyPW~S~~~G~----E~t~~w~~~~~~~~~~~~~~ 429 (772)
T COG1554 355 DTEIFVLPFLLFTDPEVARNLLLYRYNTLPGAKENAKK-YGLKGALYPWESATDGD----ECTPEWEATFERTGWRVASS 429 (772)
T ss_pred cchHHhhhhhhccChHHHHHHHHHHHhcCHHHHHHHHH-cCCCcccceeeecCCCC----ccCCcccccccccccccCcc
Confidence 79999999999999999999999999999999999999 89999999987743222 12233322 21
Q ss_pred ----cCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC-CCeEEECCCCCC-CCCccCCCCCcccccc
Q 007141 271 ----MGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSY 344 (616)
Q Consensus 271 ----~~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~ 344 (616)
+.+++||+++|.|+++|||++||++.++|+|.|+|+||.+++..+. +|+|+|..+++| ||+. .++
T Consensus 430 ~~E~Hin~dIAyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~~~~~~~~y~I~gV~GPdEY~~---------~In 500 (772)
T COG1554 430 DREIHINADIAYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVHFSDRNGRYEIHGVTGPDEYHN---------HVN 500 (772)
T ss_pred ccceehhhHHHHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHheecccCCeEEEecCcCchhhhc---------ccc
Confidence 2489999999999999999999999999999999999999999864 899999999999 8873 578
Q ss_pred CcHHHHHHHHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHcCCCC-CCCcCCCCceeeec-------cCCCCCCC
Q 007141 345 SSTMDMAIIREVFSAIISAAE--------VLEKNEDALVEKVLKSLPRLR-PTKIAEDGSIMEWA-------QDFKDPEV 408 (616)
Q Consensus 345 n~t~d~~~~r~ll~~~~~a~~--------~Lg~~~~~~~~~w~~~~~~L~-p~~i~~~G~l~ew~-------~~~~~~~~ 408 (616)
||+|||.|++++|+.++++.+ .|++. .++..+|+++.++|. |+. .+.|.+.+.+ .+++.-++
T Consensus 501 NN~fTN~ma~w~L~~ale~~~~~~~~~~~~l~it-~ee~~~w~di~~~my~p~d-e~~gv~~Q~dgf~~l~~~~~~~~~~ 578 (772)
T COG1554 501 NNAFTNLMAAWNLEYALEILEWLWSELREKLNVT-TEEIEKWADIAKKMYYPED-EELGVIAQFDGFLDLEEIDLDAYEA 578 (772)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCCCC-cccCceeeccchhhhhhCChhhccc
Confidence 999999999999999999887 37888 889999999999999 654 2335332211 01111111
Q ss_pred CCCcccccccc----CCCCCCC-------------CCCCHHHHHHHHHHHhhhCCCCCChhHHHHHHHHHHcCChhHHHH
Q 007141 409 HHRHLSHLFGL----FPGHTIT-------------IEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYR 471 (616)
Q Consensus 409 ~hRh~ShL~~l----~P~~~i~-------------~~~~p~l~~aa~~tl~~Rg~~~tgws~a~~~~~~ARLgd~~~A~~ 471 (616)
.-...+.++.. -+-.++. ...+|+..+.....+++|+.|+|++|++.|++++|+||..+.||+
T Consensus 579 ~~~~~~~~~~~~~~~~~~~q~iKQADvlm~~Yl~~~~F~~~~i~~N~dyY~~rTvh~SSLSp~ihaila~~lg~~~~Aye 658 (772)
T COG1554 579 AAGPLSQLLSYDRESVLRSQFIKQADVLMLLYLLPDLFSPETIKRNFDYYEPRTVHDSSLSPAIHAILAAELGKRDKAYE 658 (772)
T ss_pred ccCcchhhhhhcccccchhhhhhhHHHHHHHHhhhccCCHHHhhccceecccccccccccchHHHHHHHhhhCcHHHHHH
Confidence 11111111110 0001111 012334444444566778999999999999999999999999999
Q ss_pred HHHHHHhccCCcccccCCCCcccccccCCCCcccCc-chhHHHHHHHHHhhhc------CCeEEeCCCCCcccccCceee
Q 007141 472 MVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDA-NFGFTAAVAEMLVQST------LNDLYLLPALPWDKWSSGCVK 544 (616)
Q Consensus 472 ~l~~~l~~~~~~~~~~~~~~~~~nl~~~h~pfqidg-n~G~~agi~emLlqs~------~g~i~llPalP~~~W~~gs~~ 544 (616)
++++.++ +|+++.. +.+- || +.+.++|+++.++|.. +|.+.+.|.|| +.|...+|+
T Consensus 659 ~~~~~a~-iDL~n~~---~~t~------------dGiHiasm~g~W~aiV~GF~Gl~~~~~~l~~~P~LP-~~W~~l~F~ 721 (772)
T COG1554 659 YFRRAAR-IDLDDVN---GSTD------------DGIHIASMGGIWLAIVQGFAGLRTRDGQLSLAPFLP-DAWTRLKFP 721 (772)
T ss_pred HHHHHHh-ccccccC---CCcc------------chHhHHHHHHhHHHHHhhhcceEeeCCcEeECCCCc-ccccceEEE
Confidence 9999998 5765542 2332 34 4578899999999865 46899999999 999999998
Q ss_pred ceEeecc-EEEEEEEeCCeEEEEEEEeCCCC-Ccc
Q 007141 545 GLKARGG-ETVSICWKDGDLHEVGIYSNYSN-NDH 577 (616)
Q Consensus 545 gLrarG~-~~V~~~w~~g~~~~~~i~s~~g~-~~~ 577 (616)
+..||- +.|++. ++ .++++...|. .+.
T Consensus 722 -~~~rg~~l~v~v~--~~---~v~~~~~~~~~~l~ 750 (772)
T COG1554 722 -LNWRGRLLKVDVD--GA---AVTLTLEGGQTPLE 750 (772)
T ss_pred -EEEcceEEEEEec--Cc---ceEEEecCCCccee
Confidence 999986 455553 22 3456666665 444
No 3
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=100.00 E-value=3.5e-41 Score=358.21 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=213.0
Q ss_pred HHHHHhhhcCCCC--C--CCC-CCccccCCCCCCCCCCCccccccccchhcccccCCchHhhHHHHHHHHHHHHHHHHHH
Q 007141 162 FGRYLLISSSRPG--T--QVA-NLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTA 236 (616)
Q Consensus 162 ~grYllisssR~g--~--~P~-~LqGiW~~~~~~~W~g~y~~niN~qm~ywp~~~~nl~E~~~pl~~~~~~~l~~~r~~A 236 (616)
|+.|+|.++.+++ . +|+ +|.| + .|.|+++ |++|+++.|++..+.||+++.|++||.++|+.||++|
T Consensus 2 ~~lfhL~~~~~~~~~~~~i~a~GLsg---e----~Y~Gh~F--WDtE~~~~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A 72 (370)
T PF03632_consen 2 FNLFHLLQSAPRHDSRLSIGAKGLSG---E----GYKGHVF--WDTEIFMLPFFLLTHPEAARSLLNYRYRTLPQARENA 72 (370)
T ss_dssp HHHHHHHHH--SS-TT----TTTTS----S----TTTTSB---THHHHCHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHH
T ss_pred cHHHHHHHhcCCCCCCCCcCCCCCCC---C----CcCCeee--ecchHHhcchHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776664322 2 333 4555 3 6899876 5699999999999999999999999999999999999
Q ss_pred HHhcCCCceEEccccCCCCCCCCCCCCcccc---cCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcc
Q 007141 237 QVNYLASGWVIHHKTDIWAKSSADRGKVVWA---LWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 313 (616)
Q Consensus 237 ~~~yG~~G~~~~~~td~w~~t~p~~~~~~~~---~w~~~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~ 313 (616)
++ +|++||+|||.|...|.-. +..|. .-.+.+++||+++|+||+.|||.+||++.++|||+|+|+||.++++
T Consensus 73 ~~-~g~~GA~yPWeS~~~G~E~----t~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~ 147 (370)
T PF03632_consen 73 RE-YGYKGAMYPWESARTGEEC----TGPWPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVE 147 (370)
T ss_dssp HC-TT--S----SSBSS-SSB--------HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-E
T ss_pred HH-cCCCcceeecccccCcccc----CCCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheE
Confidence 99 8999999998887655211 11111 1124589999999999999999999999999999999999999999
Q ss_pred cCC-CCeEEECCCCCC-CCCccCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHcCCCC
Q 007141 314 EGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVL-----EKNEDALVEKVLKSLPRLR 386 (616)
Q Consensus 314 ~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~L-----g~~~~~~~~~w~~~~~~L~ 386 (616)
+++ +|+|+|..+++| |++. .++|++|||.|+++.|+.++++++.+ +++ +++.++|++++++|.
T Consensus 148 ~~~~~g~y~i~~V~GPDEY~~---------~V~NnayTN~ma~~~L~~A~~~~~~~~~~~l~~~-~~e~~~W~~ia~~i~ 217 (370)
T PF03632_consen 148 YNEDTGRYEIRNVTGPDEYHE---------NVDNNAYTNAMAKWNLRLAAEAAERLGEEKLGLT-EEEPEKWKEIADKIY 217 (370)
T ss_dssp EETTTTEEE--SB--SSTTS----------SBS--HHHHHHHHHHHHHHHHHHTTS-HHHHT---HHHHHHHHHHHHTB-
T ss_pred EcCCCCeEEecccCchhcccC---------CCCCcHHHHHHHHHHHHHHHHHHHHCchhhcCCC-HHHHHHHHHHHhcCC
Confidence 988 599999999999 7763 58899999999999999999998755 455 678999999999999
Q ss_pred -CCCcCCCCceeeeccCCCC--------CCCC-----CCc------------cccccccCCCCCCCCCCCHHHHHHHHHH
Q 007141 387 -PTKIAEDGSIMEWAQDFKD--------PEVH-----HRH------------LSHLFGLFPGHTITIEKNPDLCKAAEKT 440 (616)
Q Consensus 387 -p~~i~~~G~l~ew~~~~~~--------~~~~-----hRh------------~ShL~~l~P~~~i~~~~~p~l~~aa~~t 440 (616)
|+. .+.|.+.+ .+.+.. ...+ |.| ..-++.+||... ..+++.+++....
T Consensus 218 lP~d-~~~gi~~q-~dgy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qviKQADvvll~~~l~~---~~~~~~~~~n~~y 292 (370)
T PF03632_consen 218 LPYD-EETGIIPQ-FDGYFDLKEWDFSEKPGDIRLLLHYHPDVIYRSQVIKQADVVLLMYLLPE---EFTEEQKRANLDY 292 (370)
T ss_dssp --EE-TTTTEE-S-STTGGGS----GGGS-GGG-HHHCS-HHHHHHSS-BSS-SHHHHHHHTCC---CS-HHHHHHHHHH
T ss_pred cCcC-CCCCCCcC-CCCcccccCcChhhcCcccchhhcCCcccccccceecHHHHHHHHHHCCC---CCCHHHHHHHHHH
Confidence 543 34453332 211111 0000 111 111334444332 2577888889999
Q ss_pred HhhhCCCCCChhHHHHHHHHHHcCChhHHHHHHHHHHhccCCcccccCCCCcccccccCCCCcccCcchhHHHHHHHHHh
Q 007141 441 LQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLV 520 (616)
Q Consensus 441 l~~Rg~~~tgws~a~~~~~~ARLgd~~~A~~~l~~~l~~~~~~~~~~~~~~~~~nl~~~h~pfqidgn~G~~agi~emLl 520 (616)
++.|+.|++++|.+++++++|++|+.++|+++|++.+. +|.++. .+++.+++ +.++++|+++++|
T Consensus 293 Ye~~T~hdssLS~~i~ai~aa~lg~~~~A~~~f~~s~~-~Dl~~~---~~~~~~G~-----------h~a~~gG~wq~~v 357 (370)
T PF03632_consen 293 YEPRTTHDSSLSWSIHAIVAARLGDSEKAYDYFRKSAR-IDLDNE---NGNTAEGI-----------HLAGMGGFWQAVV 357 (370)
T ss_dssp HGGGB---STTCHHHHHHHHHHTT-HHHHHHHHCCCCT-TTTTTT---TS-GGG--------------GGGGGHHHHHHH
T ss_pred HcCccCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCccc---CCCCCcch-----------HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777 455332 12232222 4578889999999
Q ss_pred hhcCC
Q 007141 521 QSTLN 525 (616)
Q Consensus 521 qs~~g 525 (616)
+...|
T Consensus 358 ~Gf~G 362 (370)
T PF03632_consen 358 FGFGG 362 (370)
T ss_dssp TTTT-
T ss_pred hccCc
Confidence 98877
No 4
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.4e-23 Score=218.11 Aligned_cols=370 Identities=13% Similarity=0.141 Sum_probs=244.7
Q ss_pred HHHHHHHhhcCCHH-HHHHHHHHHHHhhhcceeEEecCCCCCcccccCCccccCCCChHHHHhhccCCCChHHHHHHHHH
Q 007141 84 SMSALQSIRNLSYS-DLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQF 162 (616)
Q Consensus 84 ~~~~l~~a~~~gy~-~l~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~~~~~~~~~~ptd~rl~~~~~~~d~~l~~l~f~~ 162 (616)
+...|.++.+..-+ .|+.+|...|..||+...+++.++ .. |++ ..+-
T Consensus 210 t~~~L~~~LQL~s~g~Ll~~H~QaW~~lW~d~f~~~~~~--------------------L~-----------L~Q-~~r~ 257 (682)
T KOG4125|consen 210 TNIGLAKMLQLNSKGKLLSSHKQAWYDLWNDAFIEIPSD--------------------LL-----------LEQ-TARS 257 (682)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhccCcH--------------------HH-----------HHH-HHhh
Confidence 34445555555555 899999999999999888776532 11 121 2345
Q ss_pred HHHHhhhcC-CC---CCCCCCC--ccccCCCCCCCCCCCccccccccchhcccccCCchHhhHHHHHHHHHHHHHHHHHH
Q 007141 163 GRYLLISSS-RP---GTQVANL--QGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTA 236 (616)
Q Consensus 163 grYllisss-R~---g~~P~~L--qGiW~~~~~~~W~g~y~~niN~qm~ywp~~~~nl~E~~~pl~~~~~~~l~~~r~~A 236 (616)
++|.|.|+- .+ +-+--+| .|+-|+.....|.||- .|++++.+.|+...-.||.++.++.||.|.|++|+.+|
T Consensus 258 slfYllS~LPqpk~~n~~~~GLSP~GLsnG~~E~~Y~GHv--FWD~diWM~P~il~F~p~~A~~~L~YR~RtL~~Ak~nA 335 (682)
T KOG4125|consen 258 SLFYLLSNLPQPKDYNVSSDGLSPVGLSNGLSEDSYGGHV--FWDADIWMEPALLPFFPNVAQNMLNYRNRTLSQAKLNA 335 (682)
T ss_pred hhhhHhhcCCCcCCCCccccCcCcccccCCcchhhcCCce--eecchhhhhhhhhhcCHHHHHHHHHhhhhhHHHHHhhH
Confidence 555666664 21 1111111 3555554445677754 46788999999999999999999999999999999999
Q ss_pred HHhcCCCceEEccccCCCCCC--CCC-CCCcccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcc
Q 007141 237 QVNYLASGWVIHHKTDIWAKS--SAD-RGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 313 (616)
Q Consensus 237 ~~~yG~~G~~~~~~td~w~~t--~p~-~~~~~~~~w~~~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~ 313 (616)
+. +|++|+.|||.+.-.|.- .|. ....+.+ .+..++.++=-||.-|.|.+|++-.+||+++.+|+||.+++.
T Consensus 336 ~~-~GY~GA~FpWESA~~G~EV~~e~~~~~QE~H----in~dv~~Af~~y~h~~~D~e~~~~t~Wpi~~~VA~F~~SRv~ 410 (682)
T KOG4125|consen 336 EK-YGYPGAIFPWESAKYGNEVSTEGPCVDQEYH----INVDVAMAFSIYLHEGIDDEYLRYTTWPIIKNVAQFFTSRVK 410 (682)
T ss_pred Hh-cCCCCccccccccccccccCCCCCceeEEEE----ecHHHHHHHHHHHHhccchhhhccCCchhHHHHHHHhhheeE
Confidence 99 899999999877655532 110 1122333 356888888889999999999998999999999999999999
Q ss_pred cCC-CCeEEECCCCCC-CCCccCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC-CCCc
Q 007141 314 EGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTKI 390 (616)
Q Consensus 314 ~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~-p~~i 390 (616)
+++ .++||+..+|+| |+++ .++|+.|||+.++-+|+-+..+|+.||.. ..++|.++.++|. |..+
T Consensus 411 ~~~s~~~yHL~nVM~PDE~H~---------~VNn~VYTNa~~k~~L~FA~~LA~hlG~~---~~~kW~eVsD~i~iprDv 478 (682)
T KOG4125|consen 411 YNSSLGLYHLYNVMDPDEFHN---------HVNNGVYTNAGIKTLLKFATDLANHLGEV---VDPKWSEVSDDIYIPRDV 478 (682)
T ss_pred ecCccceeeeeccCCchhccc---------ccccchhhhHHHHHHHHHHHHHHHhhCCc---cChhHHHhccCceecccc
Confidence 988 899999999999 7764 47899999999999999999999999965 5789999999999 6544
Q ss_pred CCCCceeeeccCCCCCCCCCCccccccccCCCCCCCCCCCHHHHHHHHHHHhhhCC-CC--CChhHHHHHHHHHHcCChh
Q 007141 391 AEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGE-EG--PGWSITWKTALWARLHDQE 467 (616)
Q Consensus 391 ~~~G~l~ew~~~~~~~~~~hRh~ShL~~l~P~~~i~~~~~p~l~~aa~~tl~~Rg~-~~--tgws~a~~~~~~ARLgd~~ 467 (616)
..+ .-.|+.--....+...-. -...+||..-|.. .....- .+.+..|+. .+ ..|++ ++..++|+-+.-
T Consensus 479 s~N-~HPey~g~V~~~~ikqad--~~l~~ypl~~~~~---~s~~nd-l~~y~~~~~~sgpamt~~~--f~a~~~~~l~~~ 549 (682)
T KOG4125|consen 479 SSN-IHPEYSGMVSSVEIKQAD--VTLMVYPLGYIND---ESILND-LYYYSERQSASGPAMTYPV--FVAAAAGLLNHG 549 (682)
T ss_pred ccc-cChhhccccchhhhhhcc--eEEEecccccccc---hhhhhh-hhhhhhcccccCCccccHH--HHHHHHhhhccc
Confidence 321 111111000000111111 1234588776532 222211 222333322 22 23444 666777776777
Q ss_pred HHHHHHHHHHhc-cCCccc--ccCCCCcccccccCCCCcccCcchhHHHHHHHHH
Q 007141 468 HAYRMVKRLFNL-VDPEHE--KHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML 519 (616)
Q Consensus 468 ~A~~~l~~~l~~-~~~~~~--~~~~~~~~~nl~~~h~pfqidgn~G~~agi~emL 519 (616)
.|-++|.+.... +.++=. ..+ +|-+ +.|.|-+.||.|+..++.-.+
T Consensus 550 ~~~~y~~~~~~~y~r~~f~~~se~-----~~g~-~~~a~flt~~ggflq~~~fg~ 598 (682)
T KOG4125|consen 550 SSSSYLYKSVLPYLRAPFAQFSEQ-----SNGL-TQPAFFLTANGGFLQSILFGL 598 (682)
T ss_pred chhHHHHhcchhhccchhhhhccC-----CCCC-CCcceeeecccHHHHHHHhcc
Confidence 777888776553 222110 011 1111 234456778888777665444
No 5
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.57 E-value=1.6e-05 Score=91.76 Aligned_cols=327 Identities=14% Similarity=0.192 Sum_probs=174.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCCccccCCCChHHHHhhccCCCChHHHHHHHH
Q 007141 82 SESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQ 161 (616)
Q Consensus 82 ~~~~~~l~~a~~~gy~~l~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~~~~~~~~~~ptd~rl~~~~~~~d~~l~~l~f~ 161 (616)
+.+.+.+++....++++++++-++.|++.-++... +.+.+. ..+ ..+..+ |+
T Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~~W~~w~~~~~~-~~~~~~-------------~~~-------------~~~~~~-~~ 259 (616)
T TIGR01577 208 EKALEELEELRTLGFERIRSQTLADWEAYFGQAKP-VQTPCL-------------EMD-------------NKIYSL-YR 259 (616)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-CCCccc-------------ccc-------------hHHHHH-HH
Confidence 34666666777789999999999999988775421 221110 000 001111 22
Q ss_pred HH-HHHhhhcCCC-CCCCCCCccccCCCCCCCCCCCcccccc--ccchhcccccCCchHhhHHHHHHHHHHHHHHHHHHH
Q 007141 162 FG-RYLLISSSRP-GTQVANLQGIWNEDLSPTWDSAPHVNIN--LEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQ 237 (616)
Q Consensus 162 ~g-rYllisssR~-g~~P~~LqGiW~~~~~~~W~g~y~~niN--~qm~ywp~~~~nl~E~~~pl~~~~~~~l~~~r~~A~ 237 (616)
-. +=|.....++ |++-+...-.|.. ...| +|++-|. .=+....+...+++|.++.+++|+.+...
T Consensus 260 ~Sll~Lk~~~~~~~GaiiAs~s~~~~~--~~~~--~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~------- 328 (616)
T TIGR01577 260 RSLAVLRLLTDGEYGSMIAAPEFDEDF--VRCG--GYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS------- 328 (616)
T ss_pred HHHHHHHhccCCCCCcEEEcCCCCccc--ccCC--CCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC-------
Confidence 22 1111222233 4422111100110 1122 3543321 12223345568899999999999866532
Q ss_pred HhcCCCceEEccccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCC
Q 007141 238 VNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHD 317 (616)
Q Consensus 238 ~~yG~~G~~~~~~td~w~~t~p~~~~~~~~~w~~~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~~ 317 (616)
.+|...|. ..+-|...|. .|..-.-..+.....+|+||+.|+|.+|++ ..||.++.+++|..+.... +
T Consensus 329 ----~~G~~~~~-~~~dG~~~~~----~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~-~~~~~v~~a~~fl~~~~~~--~ 396 (616)
T TIGR01577 329 ----RDGSWQQR-YYLNGRLAPL----QWGLQIDETGSILWAMDQHYRLTNDRAFLE-EIWESVQKAAQYLILFIDP--E 396 (616)
T ss_pred ----cCCCcceE-EecCCCCCCC----CCCccccchhHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhccC--C
Confidence 24433221 1111211110 011111113344557889999999999996 5899999999999986421 1
Q ss_pred CeEEECCCCCC-CCCccCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCCC-CC---cCC
Q 007141 318 GYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRP-TK---IAE 392 (616)
Q Consensus 318 G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~p-~~---i~~ 392 (616)
+ ..|+.+. |... |. .+++++++...|..+.++++.+|.+ +..++|++.+++|.- +. .++
T Consensus 397 l---~~~~~~lWEer~----G~-------~~~t~a~~~aAL~~aa~lA~~lGd~--~~a~~~~~~Ad~ik~~i~~~~w~~ 460 (616)
T TIGR01577 397 T---PLPCRDLWEERE----GV-------FTYTASAVYGGLDAAAAVADKLGEK--RLAQNWKKAAEFIKRAVEERFWLP 460 (616)
T ss_pred C---CCCCCccceecC----Cc-------cCccHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHhccCC
Confidence 1 1133333 3221 21 4688899999999999999999864 456788777777662 11 112
Q ss_pred C-CceeeeccCCCCCCCCCCcccccccc-CCCCCCCCCCCHHHH---HHHHHHHhh-------h--CC---CCCCh--hH
Q 007141 393 D-GSIMEWAQDFKDPEVHHRHLSHLFGL-FPGHTITIEKNPDLC---KAAEKTLQK-------R--GE---EGPGW--SI 453 (616)
Q Consensus 393 ~-G~l~ew~~~~~~~~~~hRh~ShL~~l-~P~~~i~~~~~p~l~---~aa~~tl~~-------R--g~---~~tgw--s~ 453 (616)
+ |.......+ ...+ ..-..| |+.+ .|...+.+ .+|... ++..+.|.. | ++ ++..| +.
T Consensus 461 ~~g~F~~~~~~-~~~~-~~vDaS-lL~l~~~~g~l~~-~Dpr~v~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T 536 (616)
T TIGR01577 461 ERQVFAKGIKL-MVLD-KTIDIS-ILGISVPFNLIAP-DDERMVKMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTT 536 (616)
T ss_pred CCCEEEEeecC-CCCC-CcccHH-HHhHHHhcCCCCC-CChHHHHHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHH
Confidence 2 222221110 0000 112223 4444 46777776 566543 444444432 1 11 23455 34
Q ss_pred HHHHHHHHHcCChh-------------HHHHHHHHHHhc
Q 007141 454 TWKTALWARLHDQE-------------HAYRMVKRLFNL 479 (616)
Q Consensus 454 a~~~~~~ARLgd~~-------------~A~~~l~~~l~~ 479 (616)
.|.+...+++|+.+ +|.++|+.++..
T Consensus 537 ~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~ 575 (616)
T TIGR01577 537 LWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDH 575 (616)
T ss_pred HHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhc
Confidence 57788888988765 888999988873
No 6
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=98.01 E-value=2.3e-05 Score=88.37 Aligned_cols=262 Identities=21% Similarity=0.270 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccC--CCCeEEECCCCC-CCCCccCCCCCccccccCcHHHH
Q 007141 274 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG--HDGYLETNPSTS-PEHEFIAPDGKLACVSYSSTMDM 350 (616)
Q Consensus 274 awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~--~~G~~~~~ps~s-PE~~~~~~~g~~~~~~~n~t~d~ 350 (616)
.+....+|+||++|||++||+ +.||.|+...+|+..+.... ......+. ..+ |+... .......+..+
T Consensus 207 l~~i~~~~~~y~~tGD~~~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-DW~~~~~~~-------~~~~~~~~~~~ 277 (509)
T PF05592_consen 207 LAWIIIPWDYYLYTGDREFLE-EYYPAMKRYLDYLERRVDDGLDGLPGWGFG-DWLAPGNDG-------DGPTPGATITN 277 (509)
T ss_dssp HHHHHHHHHHHHHHT-HHHHH-HHHHHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT----------SCCEEHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHhCCccccCCCCCcee-ecCCccCcc-------cccchHHHHHH
Confidence 455678999999999999997 58999999999998876540 00111111 111 22111 01244566788
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC-CCC----cCCCCceeeeccCCCCCCCCCCccccc----cccCC
Q 007141 351 AIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTK----IAEDGSIMEWAQDFKDPEVHHRHLSHL----FGLFP 421 (616)
Q Consensus 351 ~~~r~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~-p~~----i~~~G~l~ew~~~~~~~~~~hRh~ShL----~~l~P 421 (616)
++....++.+.++++.||.+ +..++|++.+++|. .+. ..+.|. ..+..+.+.. +++.|
T Consensus 278 ~~~~~~l~~~a~lA~~lg~~--~~a~~y~~~a~~lk~a~~~~~~d~~~g~-----------~~~~sq~~~alAl~~gl~p 344 (509)
T PF05592_consen 278 ALYYYALRAAAELAEALGKD--EDAAEYRARAERLKAAINRHFWDPEKGG-----------YADGSQHANALALLFGLVP 344 (509)
T ss_dssp HHHHHHHHHHHHHHHHCT-H--HHHHHHHHHHHHHHHHHHHHCEETTTTE-----------ECTTSHCHHHHCHHCCHC-
T ss_pred HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHhccCcccCc-----------ccCCchHHHHHHHHhchhh
Confidence 88899999999999999975 35777877777776 221 112220 0111122222 33333
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhh----CCC-CCC-hhHHHHHHHHHHcCChhHHHHHHHHHHh-----ccCCcccccCCC
Q 007141 422 GHTITIEKNPDLCKAAEKTLQKR----GEE-GPG-WSITWKTALWARLHDQEHAYRMVKRLFN-----LVDPEHEKHFEG 490 (616)
Q Consensus 422 ~~~i~~~~~p~l~~aa~~tl~~R----g~~-~tg-ws~a~~~~~~ARLgd~~~A~~~l~~~l~-----~~~~~~~~~~~~ 490 (616)
.. +..+++.+.|..+ +.+ .+| .+..+..-..++.|..+.|++++.+... .++. +.
T Consensus 345 ~~--------~~~~~~~~~l~~~~~~~~~~~~~g~~g~~~~~~~L~~~g~~~~a~~~~~~~~~~~w~~ml~~------g~ 410 (509)
T PF05592_consen 345 EE--------ERAAAALKRLAKRIAANGYHLSTGFIGSPYLLEALFRAGRADGAYDLLTQRDYPSWGYMLDQ------GA 410 (509)
T ss_dssp HH--------HHTCHCHCHCHHCCHCCCHS--TCCC-CHHHHHHHHHCCHHCCHHHHHHHHHHHHCHHHHCT------T-
T ss_pred hh--------hhHHHHHHHHHHHHHhcCCCcCcccccHHHHHHHHHHcCCHHHHHHHHHhccccchhHHHhC------CC
Confidence 22 1112223333222 211 111 1122233345778899999999876433 1221 11
Q ss_pred CcccccccC--CCCcccCcchhHHHHHHHHHhhhcC---------CeEEeCCCCCccc--ccCceeeceEeeccEEEEEE
Q 007141 491 GLYSNLFAA--HPPFQIDANFGFTAAVAEMLVQSTL---------NDLYLLPALPWDK--WSSGCVKGLKARGGETVSIC 557 (616)
Q Consensus 491 ~~~~nl~~~--h~pfqidgn~G~~agi~emLlqs~~---------g~i~llPalP~~~--W~~gs~~gLrarG~~~V~~~ 557 (616)
.+..=.|+. ..+....-|++..+++..-|.+.-. ..++|-|.+| .. |-++++. ..+|-+.|+.+
T Consensus 411 tT~wE~w~~~~~~~~~~S~~H~w~~~p~~~l~~~v~GI~p~~pG~~~~~i~P~~~-~~L~~~~~~~~--T~~G~I~v~w~ 487 (509)
T PF05592_consen 411 TTLWEYWDGDGGDPPNRSLCHAWSAGPTYWLYRYVLGIRPTEPGFKEFRIAPQPP-GDLTWAEGTVP--TPYGEISVSWK 487 (509)
T ss_dssp SS--SS-STT-TCTT-S-SSBGGG-THHHHHHHCTS-EEESSGGGSEEEE------TT-SEEEEEEE--ETTCEEEEEEE
T ss_pred CEEEEecCccCCCCCCCCCCCCcchhHHHHHHHHhhceEeCCCCCcEEEEEEecC-CCCcEEEEEEE--CCCceEEEEEE
Confidence 122112221 2233344578888888888866433 3789999987 54 4445543 33454555555
Q ss_pred EeCCeEEEEEEEeCCCCC
Q 007141 558 WKDGDLHEVGIYSNYSNN 575 (616)
Q Consensus 558 w~~g~~~~~~i~s~~g~~ 575 (616)
.++|++ +++|+.-.+-+
T Consensus 488 ~~~g~~-~l~v~vP~~t~ 504 (509)
T PF05592_consen 488 REDGKL-TLEVTVPAGTT 504 (509)
T ss_dssp EETTEE-EEEEEEETTSE
T ss_pred EeCCEE-EEEEEeCCCCE
Confidence 556663 55555444433
No 7
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=97.56 E-value=0.00011 Score=74.69 Aligned_cols=47 Identities=28% Similarity=0.580 Sum_probs=43.5
Q ss_pred CCCCceEEEEEEEEEcCCCceEEEecCCeEEEeCCcEEEEEEEeeecCCC
Q 007141 19 DPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDG 68 (616)
Q Consensus 19 ~~~g~~~~~~~~v~~~g~~G~~~~~~~~~l~v~~a~~v~l~~~~~t~~~~ 68 (616)
..+|++|+++++|+.+| |+|+. .+++|+|++|++|+|++++.|+|++
T Consensus 189 ~~~g~~~~~~~~v~~~g--G~v~~-~~~~l~v~~A~~v~l~~~~~T~y~~ 235 (236)
T PF14498_consen 189 GDNGMRFAGRVRVVATG--GTVTA-DGGGLRVEGADEVTLYVSAATDYRG 235 (236)
T ss_dssp TTTS-EEEEEEEEEECC--CECEC-CTTCEEEEEESEEEEEEEEEESEET
T ss_pred CCCCeEEEEEEEEEeCC--CEEEe-eCCEEEEeCCCEEEEEEEEEecCCC
Confidence 46899999999999999 99998 9999999999999999999999974
No 8
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.21 Score=58.86 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHH-------------------HHHHHHHhcccCCCCeEEECCCCCCCCCcc
Q 007141 273 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEG-------------------CASFLLDWLIEGHDGYLETNPSTSPEHEFI 333 (616)
Q Consensus 273 ~awla~~lw~yY~~TgD~~fL~~~~yP~l~e-------------------~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~ 333 (616)
-.|+++.+-+|..-|||.++|.+ ..|++.+ +.+|-..++. +.|...+.. +-=|-..
T Consensus 671 vvWl~~a~~~Yl~~TGD~aILdE-~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r~g--~~glpli~g--GDWND~l 745 (1056)
T COG3459 671 VVWLLKAIADYLKETGDAAILDE-VIPFIDGPALPEFSKEQATLYEHCARALDLAVARLG--PHGLPLILG--GDWNDGL 745 (1056)
T ss_pred eeeeHHHHHHHHHhcCcHhhhhc-cccccCCCccccccccchhHHHHHHHHHHHHHHhcC--CCCcccccC--Ccccccc
Confidence 46999999999999999999965 5566533 3333333332 233222211 1000000
Q ss_pred CC---CCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC
Q 007141 334 AP---DGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 386 (616)
Q Consensus 334 ~~---~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~ 386 (616)
.+ .|.. -+.+-=-.+-..|+..+++++.++. .+...+|++-.+.|.
T Consensus 746 n~vg~~g~g-----eSv~lgW~l~~tlq~F~~lak~r~d--~~r~~~~~~~~ea~~ 794 (1056)
T COG3459 746 NLVGNGGKG-----ESVWLGWFLALTLQTFKELAKARGD--EARADTWAKHVEALR 794 (1056)
T ss_pred cccccCCcc-----ceeehhhHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHH
Confidence 00 0100 0111122344556777888888875 467788888888877
No 9
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=97.31 E-value=0.0002 Score=77.35 Aligned_cols=169 Identities=18% Similarity=0.235 Sum_probs=52.6
Q ss_pred chhcccccCCchHhhHHHHHHHHHH-HHHHHHHHHHhcCC---------CceEEcccc----CCCCCCCCCCCCcccccC
Q 007141 204 MNYWQSLPCNLSECQEPLFDFLTYL-SINGSKTAQVNYLA---------SGWVIHHKT----DIWAKSSADRGKVVWALW 269 (616)
Q Consensus 204 m~ywp~~~~nl~E~~~pl~~~~~~~-l~~~r~~A~~~yG~---------~G~~~~~~t----d~w~~t~p~~~~~~~~~w 269 (616)
.++-+++....|++.+.+..-..+. +...... +. ++. +|.+-|--. +||..+.... -.....|
T Consensus 21 ~y~s~al~~lfP~Le~s~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~k~~G~vphdlg~p~~~P~~~~n~y~-~~~~~~~ 97 (365)
T PF04685_consen 21 FYASFALLKLFPELERSMQRDFADAILSEDNTE-RK-ILYDGKIAPRKVRGAVPHDLGSPFDDPWDRTNAYN-YHDVYAW 97 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 3466778888999999988544333 3221111 11 222 366544322 3454332100 0011233
Q ss_pred ccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCccCCCCCccccccCcHHH
Q 007141 270 PMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMD 349 (616)
Q Consensus 270 ~~~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d 349 (616)
.-.+.+....+|++|..|||.+||+ ..||.++.+.+|...+ ..|.||- +...-.|++++. .- .+.--++|+
T Consensus 98 ~D~~~~fVL~vyr~~~~TGD~~fL~-~~wp~v~~a~~~~~~~-D~d~dGl--~e~~g~~D~TyD---~~--~~~G~say~ 168 (365)
T PF04685_consen 98 KDLNPKFVLQVYRDYKWTGDRDFLK-EMWPAVKKAMDYLLSW-DRDGDGL--PENPGHPDQTYD---DW--SMYGPSAYC 168 (365)
T ss_dssp --------------------------EHHHHHHHHHHHHHHS-B--TTS---BEEET---SSST---T---EEEEEEHHH
T ss_pred ccccccccccccccccccccchhhh-hHHHHHHHHHHHHHhh-CCCCCCC--CCCCCCCccccc---cC--CeeCCCHHH
Confidence 3346677889999999999999997 5899999999999983 3334673 222334456552 11 122347899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC
Q 007141 350 MAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 386 (616)
Q Consensus 350 ~~~~r~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~ 386 (616)
..+--..|+.++++++.||. .+..+++++.+++..
T Consensus 169 ~~L~laAL~A~~emA~~lgd--~~~a~~y~~~~~~~~ 203 (365)
T PF04685_consen 169 GGLWLAALRAAAEMAKILGD--PELAAKYRELAEKAK 203 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 99999999999999999986 455667777766655
No 10
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.21 E-value=0.017 Score=66.38 Aligned_cols=275 Identities=18% Similarity=0.186 Sum_probs=163.3
Q ss_pred CCCCCCCccccCCCCCCCCCC-Cccccccccchh--cccccCCchHhhHHHHHHHHHHHH-HHHHHHHHhcCCCceEEcc
Q 007141 174 GTQVANLQGIWNEDLSPTWDS-APHVNINLEMNY--WQSLPCNLSECQEPLFDFLTYLSI-NGSKTAQVNYLASGWVIHH 249 (616)
Q Consensus 174 g~~P~~LqGiW~~~~~~~W~g-~y~~niN~qm~y--wp~~~~nl~E~~~pl~~~~~~~l~-~~r~~A~~~yG~~G~~~~~ 249 (616)
|.+-++....|.+.. ++. ||++-|.=-.++ +.....+..+.++.+|.|+.+... .+. -...|..+|. .
T Consensus 262 G~ivAs~t~~l~~~~---~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~--~~~~y~~~g~---~ 333 (612)
T COG3387 262 GAIVASPTTSLPELI---GGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGK--LYHKYSIDGS---D 333 (612)
T ss_pred CcEEEcCCCCccccC---CCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCc--eeeEEecCCC---c
Confidence 665556656565431 221 366554433333 445568899999999999877643 232 2223555554 1
Q ss_pred ccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCC-
Q 007141 250 KTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSP- 328 (616)
Q Consensus 250 ~td~w~~t~p~~~~~~~~~w~~~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~~G~~~~~ps~sP- 328 (616)
-...|.. -. .....+..+...+++...+++.|+....|..+..++...+.+..+.|... +.+...+ -..|+.+=
T Consensus 334 ~~~~w~~-~~-~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~~~W 408 (612)
T COG3387 334 LAESWLP-VS-GYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRR-MEKIKAN--LPTPDFDLW 408 (612)
T ss_pred ccccccc-cc-CCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhhhcC--CCCCcccee
Confidence 1112221 00 11112334555689999999999999999999988888999999999988 4432212 22344444
Q ss_pred CCCccCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCCC-CC---cCCC-CceeeeccCC
Q 007141 329 EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRP-TK---IAED-GSIMEWAQDF 403 (616)
Q Consensus 329 E~~~~~~~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~p-~~---i~~~-G~l~ew~~~~ 403 (616)
|... | ..+|+..+++..|..+.++++.+| + .+..+.|+..+++|.- .. ...+ |... ..+
T Consensus 409 Eer~----g-------~~~yt~~~~~agLd~A~~lA~~~g-d-~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~---r~~ 472 (612)
T COG3387 409 EERG----G-------HFTYTKATVYAGLDAAADLAEEFG-D-KGSAEHWRKTADELKEAVLRRGYAEDGGYFV---RSL 472 (612)
T ss_pred cccC----C-------cccchHHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHhcccccCCeee---hhc
Confidence 4432 1 468999999999999999999999 4 5678888888777662 10 1111 2111 111
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCHHH---HHHHHHHHhh------h--C--CC-----CCCh--hHHHHHHHHHHc
Q 007141 404 KDPEVHHRHLSHLFGLFPGHTITIEKNPDL---CKAAEKTLQK------R--G--EE-----GPGW--SITWKTALWARL 463 (616)
Q Consensus 404 ~~~~~~hRh~ShL~~l~P~~~i~~~~~p~l---~~aa~~tl~~------R--g--~~-----~tgw--s~a~~~~~~ARL 463 (616)
.+ .+.--+-+-|.++.=...|.+ ++|.. +++..+.|.. | + .+ +..| ...|.+-...++
T Consensus 473 ~~-~~~~~vDasll~l~~fg~i~~-~D~~~~~t~~~I~~~L~~~~~gi~RY~~~~~d~~~~~~~~w~i~t~Wl~~~~~~~ 550 (612)
T COG3387 473 GR-KPDDTVDASLLGLVLFGFIPP-DDPRILATVEAIERELLVDGGGIRRYNNEYDDGLGGDNGPWIITTLWLSEYYLAL 550 (612)
T ss_pred CC-CccccccHHHhhccccCccCC-CCHHHHHHHHHHHHHHhhcCCcEEcCccccccccCCCCCcceeehhHHHHHHHHc
Confidence 10 112222233444333445666 57733 3333333322 1 1 11 1134 336888899999
Q ss_pred CChhHHHHHHHHHHhc
Q 007141 464 HDQEHAYRMVKRLFNL 479 (616)
Q Consensus 464 gd~~~A~~~l~~~l~~ 479 (616)
|+.++|.++|+.++..
T Consensus 551 g~~~~a~~ll~~l~~~ 566 (612)
T COG3387 551 GRLDEAKKLLEWLLAF 566 (612)
T ss_pred cchHHHHHHHHHHHHh
Confidence 9999999999998874
No 11
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=97.01 E-value=0.043 Score=59.51 Aligned_cols=282 Identities=20% Similarity=0.211 Sum_probs=140.1
Q ss_pred ccCCchHhhHHHHHHHHHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCC
Q 007141 210 LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMD 289 (616)
Q Consensus 210 ~~~nl~E~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~t~p~~~~~~~~~w~~~~awla~~lw~yY~~TgD 289 (616)
+..+.++.++..+..+.+... .|-+-+ ..+. +. .+.+. ..-...|....+.+|+++|+|
T Consensus 44 l~~~~~~~a~~~L~~~~~~~~------------~G~ipn-~~~~-~~------~~~Y~-s~Dat~wfl~~l~~Y~~~t~D 102 (370)
T PF06202_consen 44 LSPGRFEEARNILATFAGTQR------------HGLIPN-ELRD-GE------EPRYN-SVDATLWFLIALQEYYRWTGD 102 (370)
T ss_pred hCCCcHHHHHHHHHHHHHhhh------------cCcccC-cccC-CC------CCCCC-CCccHHHHHHHHHHHHHHhCC
Confidence 467788888888876655443 333322 1111 11 11111 112367888999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhcc----cCC-CCeEEECCCCCCCCCccC--CCCCccccccCcH-HHHHHHHHHHHHHH
Q 007141 290 RDFLEKRAYPLLEGCASFLLDWLI----EGH-DGYLETNPSTSPEHEFIA--PDGKLACVSYSST-MDMAIIREVFSAII 361 (616)
Q Consensus 290 ~~fL~~~~yP~l~e~A~F~~~~l~----~~~-~G~~~~~ps~sPE~~~~~--~~g~~~~~~~n~t-~d~~~~r~ll~~~~ 361 (616)
.+||+ +.+|.|+++.+.+.+... .++ +| +...+....=.++.+ .+|....--.+.. --|+++...+..+.
T Consensus 103 ~~~l~-~~~~~i~~il~~~~~g~~~~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~ 180 (370)
T PF06202_consen 103 YSFLR-ELYPAIEEILEWYADGTDFGIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAA 180 (370)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCccccccCCC-eeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 99996 589999999999877433 232 44 333322111112211 1121111111222 33556666777777
Q ss_pred HHHHHhCCCcHHHHHHHHHHcCCCCC-C----CcCCCCceeeeccCCCCCCCCCCcccccccc-CCCCCCCCCCCHHHHH
Q 007141 362 SAAEVLEKNEDALVEKVLKSLPRLRP-T----KIAEDGSIMEWAQDFKDPEVHHRHLSHLFGL-FPGHTITIEKNPDLCK 435 (616)
Q Consensus 362 ~a~~~Lg~~~~~~~~~w~~~~~~L~p-~----~i~~~G~l~ew~~~~~~~~~~hRh~ShL~~l-~P~~~i~~~~~p~l~~ 435 (616)
++++..+.+ ...+|++.+++|.- + -..+.|.+........+.+..-|-. +++++ .|...++.+....+.+
T Consensus 181 ~la~~~~~~---~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~~~d~~irpN-~~~a~~L~~~~l~~~~a~~vl~ 256 (370)
T PF06202_consen 181 ELAEKFGDE---LAARYREWAERLKESFEKRFWDEDRGYYADALDGDKEPDDSIRPN-QLIALSLPPGLLDPEQAKKVLD 256 (370)
T ss_pred HHHhhcCCc---hHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCCCCCcccccC-chhHHhcCCccCCHHHHHHHHH
Confidence 777755432 45567666666652 2 1234454443332211222222321 22221 2333343221112222
Q ss_pred HHH---------HHHhhh-----C-------------CCCCCh--hHHHHHHHHHHcCC-hhHHHHHHHHHHhccCCccc
Q 007141 436 AAE---------KTLQKR-----G-------------EEGPGW--SITWKTALWARLHD-QEHAYRMVKRLFNLVDPEHE 485 (616)
Q Consensus 436 aa~---------~tl~~R-----g-------------~~~tgw--s~a~~~~~~ARLgd-~~~A~~~l~~~l~~~~~~~~ 485 (616)
.+. +||... + ..+|-| -.+..+...+|.|. .+++.+.++.++..+.. ..
T Consensus 257 ~~~~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~~~~~~~~~~~ll~~~~~-~~ 335 (370)
T PF06202_consen 257 RVEEELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFDEEEAIREAKSLLEGFEE-HL 335 (370)
T ss_pred HHHHHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HH
Confidence 222 222211 1 013444 33444555677877 46777777766663210 00
Q ss_pred ccCCCCcccccccCCCCcccCcchhHHHHHHHHH
Q 007141 486 KHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML 519 (616)
Q Consensus 486 ~~~~~~~~~nl~~~h~pfqidgn~G~~agi~emL 519 (616)
....-+..|-+|+..||+...|...-+-+++|+|
T Consensus 336 ~~~~~~~lpEl~dg~~~~~p~gc~~QAWS~a~il 369 (370)
T PF06202_consen 336 QEFGLGRLPELFDGDPPHYPRGCSPQAWSVAEIL 369 (370)
T ss_pred hhccCCCcchhcCCCCCCCCCCCHHHHHHHHHhh
Confidence 1112456677888777776666655555566554
No 12
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.66 E-value=0.14 Score=59.38 Aligned_cols=237 Identities=15% Similarity=0.142 Sum_probs=128.8
Q ss_pred cEEEEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCCcc
Q 007141 54 DWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEE 133 (616)
Q Consensus 54 ~~v~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gy~~l~~~H~~~w~~lw~r~~i~L~~~~~~~~~~~~~~~ 133 (616)
.+.+|++..+.++ +.|.+.+..+...+|+.++++-...|+++-++.. .+.++
T Consensus 197 ~~f~l~lgfg~~~---------------~~a~~~~~~~l~~g~~~~~~~~~~~W~~w~~~~~-~~~~~------------ 248 (648)
T TIGR01535 197 ETFELVLGFGASA---------------YEAAKTAVATLKEGYRRVKDAYIDEWEKYLNSLN-NFNGK------------ 248 (648)
T ss_pred eEEEEEEEeCCCH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cCCch------------
Confidence 3566666655543 3455666677788999999999999998877641 12211
Q ss_pred ccCCCChHHHHhhccCCCChHHHHHHHHHHHHHh-hhcC--CCCCCCCCCccccCCCCCCCCCCCccccc--cccchhcc
Q 007141 134 NIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLL-ISSS--RPGTQVANLQGIWNEDLSPTWDSAPHVNI--NLEMNYWQ 208 (616)
Q Consensus 134 ~~~~~ptd~rl~~~~~~~d~~l~~l~f~~grYll-isss--R~g~~P~~LqGiW~~~~~~~W~g~y~~ni--N~qm~ywp 208 (616)
..+++. -+.-.| .... .+|.+.+.++=.|.+...-.=+++|++=| +.=+....
T Consensus 249 ---------------------~~~~~~-rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~A 306 (648)
T TIGR01535 249 ---------------------GNSLYY-VSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANA 306 (648)
T ss_pred ---------------------HHHHHH-HHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHH
Confidence 112222 221222 2222 34776666655555432111123465321 11112223
Q ss_pred cccCCchHhhHHHHHHHHHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCccC-HHHHHHHHHHHHHhc
Q 007141 209 SLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMG-GAWLCTHLWEHYNYT 287 (616)
Q Consensus 209 ~~~~nl~E~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~t~p~~~~~~~~~w~~~-~awla~~lw~yY~~T 287 (616)
+...+..|.++.+|+|+.+.... +|...+ +..+-| .+.|.--+.. .+.+...+|.+++.
T Consensus 307 L~~~G~~~~a~~~~~~l~~~~~~-----------~G~~lq-~y~vdG-------~~~~~~iQlD~~g~~i~~~~~l~~~- 366 (648)
T TIGR01535 307 FLAAGDVDSALRSLDYLAKVQQD-----------NGMFPQ-NSWVDG-------KPYWTGIQLDETAFPILLAYRLHRY- 366 (648)
T ss_pred HHHCCCHHHHHHHHHHHHHHhcc-----------CCCcCc-eeccCC-------CCCCCCccccHHHHHHHHHHHHHHc-
Confidence 45689999999999999776541 222211 111111 1122111111 22333344555553
Q ss_pred CCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCccCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHh
Q 007141 288 MDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVL 367 (616)
Q Consensus 288 gD~~fL~~~~yP~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~L 367 (616)
+.. ..+++++.+|+|....-..-..|.+ |... | -..||.+.+-..|..+.++++.+
T Consensus 367 -~~~----~~~~~vk~aadfl~~~~p~p~~d~W--------Eer~----g-------~~~~T~a~v~aaL~~Aa~iA~~~ 422 (648)
T TIGR01535 367 -DHA----FYDKMLKPAADFIVKNGPKTGQERW--------EEIG----G-------YSPSTLAAEIAGLTAAADIAEQN 422 (648)
T ss_pred -CcH----HHHHHHHHHHHHHHHcCCCCCCCcc--------cccC----C-------cCchhHHHHHHHHHHHHHHHHHc
Confidence 322 2579999999999886311112333 3221 1 13477777778899999999999
Q ss_pred CCCcHHHHHHHHHHcCCCC
Q 007141 368 EKNEDALVEKVLKSLPRLR 386 (616)
Q Consensus 368 g~~~~~~~~~w~~~~~~L~ 386 (616)
|.+ +..++|++.++++.
T Consensus 423 g~~--~~a~~w~~~Ad~i~ 439 (648)
T TIGR01535 423 GDA--GSAQKYRETADNWQ 439 (648)
T ss_pred CCc--HHHHHHHHHHHHHH
Confidence 975 36777877666653
No 13
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.15 Score=59.16 Aligned_cols=292 Identities=18% Similarity=0.258 Sum_probs=148.5
Q ss_pred cCCchHhhHHHHHHHHHHHHHHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCcc-CHHHHHHHHHHHHHhcCC
Q 007141 211 PCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM-GGAWLCTHLWEHYNYTMD 289 (616)
Q Consensus 211 ~~nl~E~~~pl~~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~t~p~~~~~~~~~w~~-~~awla~~lw~yY~~TgD 289 (616)
..+++|+|+..+.++.+..+ +|-.-|+.. ... ++.+.|. +. ...|-++.+.+|+.+|+|
T Consensus 298 ~~g~~elArg~L~~~a~~~~------------~GkIPhe~~----~~~--~~~~~Y~--tvD~t~~~i~~~~~y~~~t~d 357 (641)
T COG3408 298 LVGRFELARGTLNTLARYSE------------PGKIPHEIL----LSI--PGEPYYN--TVDATPLFIYLLGAYLKYTGD 357 (641)
T ss_pred hcCCHHHHHHHHHHHHhhcc------------CCCCcchhh----hcC--CCcceec--cCCCcHHHHHHHHHHHHHhcc
Confidence 34799999999988866522 444433320 000 1122221 11 256888999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCC----CccCCCCC-ccccc-cCcHHHHHHHHH-HHHHHHH
Q 007141 290 RDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEH----EFIAPDGK-LACVS-YSSTMDMAIIRE-VFSAIIS 362 (616)
Q Consensus 290 ~~fL~~~~yP~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~----~~~~~~g~-~~~~~-~n~t~d~~~~r~-ll~~~~~ 362 (616)
.+|+++ .+|.+..+.+.|.-....+ +++...-..+. ++.+.... ..... .+...++..++- ++..+..
T Consensus 358 ~~~i~e-~~~~v~~a~d~~~~~~~~~----~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~ 432 (641)
T COG3408 358 TEFIRE-LWPSVGAALDWILKGFDFG----FDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALR 432 (641)
T ss_pred HHHHHH-HHHHHHHHHHHHHhcCCcc----ceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHH
Confidence 999975 8999999988887665332 22221111121 11110000 00011 233344444433 7788888
Q ss_pred HHHHhCCCcHHHHHHHHHHcCCCCC-CCcCCCCceeeecc-CC-----CCCCCCCCccc--cccccCCCCCCCCCCCHHH
Q 007141 363 AAEVLEKNEDALVEKVLKSLPRLRP-TKIAEDGSIMEWAQ-DF-----KDPEVHHRHLS--HLFGLFPGHTITIEKNPDL 433 (616)
Q Consensus 363 a~~~Lg~~~~~~~~~w~~~~~~L~p-~~i~~~G~l~ew~~-~~-----~~~~~~hRh~S--hL~~l~P~~~i~~~~~p~l 433 (616)
+++.|+ + .+..++|.+.+++|.- +.. ..|.. .+ ...+..-|-.+ ....+|+ .|. +++.
T Consensus 433 ~a~ll~-~-~~~~~~~~~~a~~l~~~F~~------~fw~~~~f~dl~~~~~~~~~r~~~~~a~~l~~~--gi~---~~~~ 499 (641)
T COG3408 433 LANLLG-D-EEDAARLEKIARRLKESFEA------KFWNPTGFYDLALDDKDVPIRPNFSNAIHLLYT--GIV---DPER 499 (641)
T ss_pred HHHHhc-c-cccHHHHHHHHHHHHHHHHH------HhhCccchHhhhccCCCcccCccceeccccccc--ccC---chHH
Confidence 888888 4 5567778887777762 211 11111 01 00111122221 1222222 232 2322
Q ss_pred HHHHHHHHhh-----h-------------C---CCCCChh--HHHHHHHHHHcCChh-HHHHHHHHHHhccCCcccccCC
Q 007141 434 CKAAEKTLQK-----R-------------G---EEGPGWS--ITWKTALWARLHDQE-HAYRMVKRLFNLVDPEHEKHFE 489 (616)
Q Consensus 434 ~~aa~~tl~~-----R-------------g---~~~tgws--~a~~~~~~ARLgd~~-~A~~~l~~~l~~~~~~~~~~~~ 489 (616)
+ ++.+-++. + + ..+|-|. .++.+.-+-|.|..+ ++.+++...+.....
T Consensus 500 ~-~~~~l~e~~lltp~GlRTLS~~dp~Y~p~yYH~GtVWP~~~gifv~g~~r~G~~~~~~~~~~~~~~~~a~~------- 571 (641)
T COG3408 500 A-VIIRLAEEDLLTPWGLRTLSPDDPRYNPMYYHNGTVWPHDTGIFVLGLRRYGLKDIQALELFDGLFSSASP------- 571 (641)
T ss_pred H-HHHHHHHHhccCCccccccCCCCCCcCCCcccCCCcccchHHHHHHHHHHcCcccHHHHHHHHHHhhhccc-------
Confidence 2 22222211 1 1 1244453 355566677889888 888888888774332
Q ss_pred CCcccccccCCCCcccCcch--hHHHHHH-HHHhhh----cCCeEEeCCCCCcccccCceeeceEeeccE
Q 007141 490 GGLYSNLFAAHPPFQIDANF--GFTAAVA-EMLVQS----TLNDLYLLPALPWDKWSSGCVKGLKARGGE 552 (616)
Q Consensus 490 ~~~~~nl~~~h~pfqidgn~--G~~agi~-emLlqs----~~g~i~llPalP~~~W~~gs~~gLrarG~~ 552 (616)
+..|-+|+.-.|--.-|++ +-.+|+. ..++|+ ..+..++++. | ..|+...++ |+.||..
T Consensus 572 -~~~pE~f~g~~~~~P~gc~~QAWS~a~~l~~~~~~~lg~~p~~~~~~~~-p-~~~~~~~~~-~~~~~~~ 637 (641)
T COG3408 572 -GRIPELFDGDSPNRPKGCYPQAWSSAEILRSLLQGLLGIKPDGFRLFKT-P-ESLKIVKLS-LKVRGKL 637 (641)
T ss_pred -CCCcccccccCCCCCCCcchhhhhHHHHHHHHHHHHhCCCcCcccccCC-C-ccccceEEE-EEeccee
Confidence 1113344321110012322 2222222 224453 3333378888 9 999999998 8888863
No 14
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=96.16 E-value=0.011 Score=45.75 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=24.0
Q ss_pred CCCCcccccCceeeceEeecc-EEEEEEEeCCeEEEEEEEeCCCCCcc
Q 007141 531 PALPWDKWSSGCVKGLKARGG-ETVSICWKDGDLHEVGIYSNYSNNDH 577 (616)
Q Consensus 531 PalP~~~W~~gs~~gLrarG~-~~V~~~w~~g~~~~~~i~s~~g~~~~ 577 (616)
|.|| ++|+..+|+ |+.||. +.|++ +.+++ ++++.+.. ..++
T Consensus 1 P~LP-~~w~~l~F~-~~~rg~~l~v~i--~~~~v-~v~~~~g~-~~l~ 42 (54)
T PF03633_consen 1 PRLP-KQWSSLSFR-LRYRGHWLEVEI--THEKV-TVTLLSGD-APLT 42 (54)
T ss_dssp -----TT-SEEEEE-EEETTEEEEEEE--ETTEE-EEEEEESS---EE
T ss_pred CcCC-CccCEeEEE-EEECCEEEEEEE--ECCEE-EEEEccCC-ccEE
Confidence 8999 999999998 999998 45555 46663 55555443 4665
No 15
>PRK10137 alpha-glucosidase; Provisional
Probab=95.16 E-value=1.1 Score=52.73 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEE
Q 007141 277 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLE 321 (616)
Q Consensus 277 a~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~~G~~~ 321 (616)
+..+|++|+.|+|++||+ +.||-|...-++|..+-..+.+|...
T Consensus 423 a~av~~vy~~t~d~~fl~-~lyPkL~a~h~Ww~~~RD~dg~Gl~e 466 (786)
T PRK10137 423 AWSVMEVYNVTQDKAWLA-EMYPKLVAYHDWWLRNRDHNGNGVPE 466 (786)
T ss_pred HHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCCCCceeE
Confidence 345688999999999996 59999999999999976555567433
No 16
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=94.64 E-value=0.25 Score=55.06 Aligned_cols=193 Identities=15% Similarity=0.161 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCccccCCCCCCCCCCCcccccc--ccchhc--ccccCCchHhhHHHHHHHHHHHH
Q 007141 155 LVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNIN--LEMNYW--QSLPCNLSECQEPLFDFLTYLSI 230 (616)
Q Consensus 155 l~~l~f~~grYllisssR~g~~P~~LqGiW~~~~~~~W~g~y~~niN--~qm~yw--p~~~~nl~E~~~pl~~~~~~~l~ 230 (616)
|.-++| -..|.|-|++= --|.+-.|+|-.-. |++..+ .-+.+. +..+.-.||+.+..++...+..+
T Consensus 322 lkdal~-n~lyiLts~tW--ld~~G~FaV~E~~~-------~~~y~~tig~~~~~GsfgllllfPeLek~~~~~f~~~i~ 391 (721)
T COG4354 322 LKDALF-NSLYILTSNTW--LDKDGRFAVYECPF-------YTWYESTIGDVRLYGSFGLLLLFPELEKSVMRAFARAIP 391 (721)
T ss_pred HHHHHH-HHHHHHhhccc--ccCCCceEEEeccc-------ccchhcccceeEecCCchHHHHhHHHHHHHHHHHHHhcc
Confidence 334455 56788877542 23556667775432 222222 223333 33345568888888877766555
Q ss_pred HHHHHHHHhcCC---------CceEEcccc----CCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHHHhh
Q 007141 231 NGSKTAQVNYLA---------SGWVIHHKT----DIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRA 297 (616)
Q Consensus 231 ~~r~~A~~~yG~---------~G~~~~~~t----d~w~~t~p~~~~~~~~~w~~~~awla~~lw~yY~~TgD~~fL~~~~ 297 (616)
..-..-| ..|+ ++++ ||-. ..|..+-- +.......|.--+..+...++.+|.||+|.+||++ .
T Consensus 392 ~eD~~~~-v~gy~~~~~~~k~~~~t-phDLg~~ehs~e~~iy-~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~e-~ 467 (721)
T COG4354 392 KEDTEYR-VIGYAFPEAERKKDPAT-PHDLGPNEHSIEKPIY-GTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLKE-V 467 (721)
T ss_pred ccCCcee-eeeeccchhhccCCCCC-CcccCccccchhcccc-cccCCchhhhhcCCcEEeeehhhhhhcccHHHHHH-H
Confidence 2211111 1222 2232 2211 11221100 00111224544456677889999999999999975 8
Q ss_pred HHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCccCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCC
Q 007141 298 YPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEK 369 (616)
Q Consensus 298 yP~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~~r~ll~~~~~a~~~Lg~ 369 (616)
||.++++.++...+ ..+.|| .-..+-.|.+.+. +.. +---++|..+|--..+..++++++.|+.
T Consensus 468 y~~iv~~iD~~~~~-d~d~Dg--iP~~~g~~d~~fD---a~~--i~G~ssy~~sl~iaal~A~l~is~~l~~ 531 (721)
T COG4354 468 YPVIVEAIDWLKRF-DQDNDG--IPENSGAMDNTFD---ATR--IQGHSSYCGSLFIAALIAALEISKYLLD 531 (721)
T ss_pred HHHHHHHHHHHHhh-cccCCC--CCcccCCcccccc---cce--eechhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999999876543 233355 1111223344431 111 1123467777777777778888877753
No 17
>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65.
Probab=94.16 E-value=0.082 Score=60.31 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=48.7
Q ss_pred CCeEEEeCCcEEEE--EEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhc--CCHHHHHHHHHHHHHhhhcceeEEecC
Q 007141 45 DKKLKVEGSDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMSALQSIRN--LSYSDLYTRHLDDYQKLFHRVSIQLSR 120 (616)
Q Consensus 45 ~~~l~v~~a~~v~l--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~gy~~l~~~H~~~w~~lw~r~~i~L~~ 120 (616)
.++|+|+.-++..+ +.++.++-.-.-.+.....+...+.|.+.+.++.. .+.+.|+++|++.|++||. +.+.|+.
T Consensus 242 P~~iqV~~ks~~~~~~ltvV~yS~Pi~~~~~~~~~~~l~~~a~~em~~ll~~~~~~~~L~~eH~~aW~~Lw~-SG~~Is~ 320 (604)
T PF10222_consen 242 PSTIQVKAKSETKLTFLTVVNYSEPIDESKYKETFEALEEQAKKEMKELLQSGMSVEDLLQEHVDAWSDLWS-SGFEISK 320 (604)
T ss_pred CCCEEECCCceEEEEEEEEEEEeccccchhhhhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh-ccccccc
Confidence 67899987776654 33443443210000001111223456677777777 7999999999999999998 6777775
Q ss_pred CC
Q 007141 121 SP 122 (616)
Q Consensus 121 ~~ 122 (616)
+.
T Consensus 321 sk 322 (604)
T PF10222_consen 321 SK 322 (604)
T ss_pred cc
Confidence 53
No 18
>PRK13271 treA trehalase; Provisional
Probab=91.14 E-value=6 Score=45.34 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHh
Q 007141 275 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 311 (616)
Q Consensus 275 wla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~ 311 (616)
-++.++..|++.|+| +||+ +.+|.|+.=-+||++-
T Consensus 214 ~l~~Mv~~~~~~~~~-~~l~-~~lp~l~kEy~~Wm~~ 248 (569)
T PRK13271 214 FFALMVELLAQHEGD-AALK-QYLPQMQKEYAYWMEG 248 (569)
T ss_pred hHHHHHHHHHhcCcH-HHHH-HHHHHHHHHHHHHhCC
Confidence 667788899999988 5996 6899999888999973
No 19
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=90.87 E-value=3.3 Score=47.58 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHh---cc-cCCCCeEEECCCCCCCCCccCC-CC-Ccccccc-
Q 007141 272 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW---LI-EGHDGYLETNPSTSPEHEFIAP-DG-KLACVSY- 344 (616)
Q Consensus 272 ~~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~---l~-~~~~G~~~~~ps~sPE~~~~~~-~g-~~~~~~~- 344 (616)
.+.|....+.+||++|+|.+|++ +.+|.|+++.+-|.+- .+ .|+||-+... .+ -++.+. .| ....--.
T Consensus 349 AtLWfi~al~~Y~~~tgD~~~l~-~l~p~l~~ii~~y~~G~~~~i~~d~dGLi~~g---~~-lTWMDa~~g~~~~tPR~G 423 (575)
T TIGR01561 349 ASLWAIHAIDKTFAYSQDFLFIR-DVVDKVLDIIDNYCAGNDFAIGMDNDLIFHKG---AP-LTWMDAKVDERAVTPRAG 423 (575)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHhcCCCcEEEECCCccEeCC---CC-CCCCCCCCCCccCCCCCC
Confidence 46788999999999999999996 5899999998877551 11 1223422211 11 122221 11 1111111
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 007141 345 SSTMDMAIIREVFSAIISAAEVLEKN 370 (616)
Q Consensus 345 n~t~d~~~~r~ll~~~~~a~~~Lg~~ 370 (616)
-+..-|+++...|..+.++++.+|.+
T Consensus 424 ~~VEInALwYnAL~~~a~la~~~g~~ 449 (575)
T TIGR01561 424 AACEINALWYNALKTAEFLGNELGED 449 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 35566777888888888899988854
No 20
>PRK13272 treA trehalase; Provisional
Probab=87.12 E-value=23 Score=40.36 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHh
Q 007141 275 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 311 (616)
Q Consensus 275 wla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~ 311 (616)
-++.++..||+.|+|..| + +.+|.|+.=-+||++-
T Consensus 215 ~l~~Mv~~~~~~t~d~~~-~-~~lp~l~kEy~~Wm~~ 249 (542)
T PRK13272 215 FFSYMVELQAGVEGDAAY-Q-RYLPQLQKEYAYWMQG 249 (542)
T ss_pred hHHHHHHHHHHhcChHHH-H-HHHHHHHHHHHHHcCC
Confidence 677889999999999987 4 5899999888999873
No 21
>PLN02567 alpha,alpha-trehalase
Probab=79.33 E-value=3.8 Score=46.93 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHH
Q 007141 275 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 310 (616)
Q Consensus 275 wla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~ 310 (616)
-++.+++.+|+.|+|++||+ +.+|.|..=-+||.+
T Consensus 207 lla~mV~~~~~~t~d~~~l~-~~lp~L~~E~~~W~~ 241 (554)
T PLN02567 207 LLSAMVLAVYAATKDVELVR-RALPALLKEHAFWTS 241 (554)
T ss_pred HHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHhc
Confidence 66788899999999999997 689999888899987
No 22
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=71.57 E-value=3.9 Score=46.42 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHH
Q 007141 275 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 310 (616)
Q Consensus 275 wla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~ 310 (616)
-++.+++++|+.|+|++||+ +.+|.|+.=-+||.+
T Consensus 183 lla~mV~~~y~~t~d~~~l~-~~lp~L~ke~~fW~~ 217 (512)
T PF01204_consen 183 LLAQMVREYYEATKDKAFLR-EALPALEKEYEFWMD 217 (512)
T ss_dssp -HHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHCC
Confidence 56788999999999999997 589999999999994
No 23
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=63.49 E-value=2.7e+02 Score=35.58 Aligned_cols=39 Identities=3% Similarity=0.062 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHhcCC-HHHH---------------------HHhhHHHHHHHHHHHHH
Q 007141 272 GGAWLCTHLWEHYNYTMD-RDFL---------------------EKRAYPLLEGCASFLLD 310 (616)
Q Consensus 272 ~~awla~~lw~yY~~TgD-~~fL---------------------~~~~yP~l~e~A~F~~~ 310 (616)
+..|..+.+.+|+++++| .++| .+..+|+|+|+.+-+.+
T Consensus 1092 A~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~~h~~ 1152 (1464)
T TIGR01531 1092 AAWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQKHFQ 1152 (1464)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHc
Confidence 367899999999999999 4554 33468899999988874
No 24
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=51.32 E-value=30 Score=40.19 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCccCCCCCcccccc-CcHHHHHHHHH
Q 007141 277 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSY-SSTMDMAIIRE 355 (616)
Q Consensus 277 a~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~-n~t~d~~~~r~ 355 (616)
+..+|.-|-.|||+.||+ ..||..+.+.+..+.| .+|.|| .|-..--|..+| ++..+. -++|-=.+.-.
T Consensus 563 VLqvYRD~~~tgd~~flk-~~wpsv~~ime~l~~f-DKD~DG--mIEN~GfpDQTY------D~W~~tGvSAYCGgLWlA 632 (879)
T KOG2119|consen 563 VLQVYRDYVATGDEKFLK-AVWPSVYAIMEYLEQF-DKDNDG--MIENEGFPDQTY------DAWSMTGVSAYCGGLWLA 632 (879)
T ss_pred EEEEEeeeEEeccHHHHH-HHHHHHHHHHHHHHhh-cccCCc--ccccCCCCCccc------cceEEecchhhhhHHHHH
Confidence 345566666899999997 5899999988776666 344466 443333344443 223333 35788888888
Q ss_pred HHHHHHHHHHHhCCC
Q 007141 356 VFSAIISAAEVLEKN 370 (616)
Q Consensus 356 ll~~~~~a~~~Lg~~ 370 (616)
.|+.++++|.++|.+
T Consensus 633 ALqa~~amA~~~g~~ 647 (879)
T KOG2119|consen 633 ALQAASAMARQIGDP 647 (879)
T ss_pred HHHHHHHHHHHhCCh
Confidence 999999999999865
No 25
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=48.37 E-value=34 Score=39.30 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC
Q 007141 275 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH 316 (616)
Q Consensus 275 wla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~~~~ 316 (616)
-++.++++||+.|+|.+|++ +++|.|..=-.||.+.=..+.
T Consensus 240 llt~Mv~~~y~~t~~~~~~~-~~l~tl~kEy~fw~~~~~~~~ 280 (600)
T KOG0602|consen 240 LLTGMVYEYYEATNDEQFLK-RALPTLIKEYEFWTNNRTEDV 280 (600)
T ss_pred hhhhhHHHhhhccCcHHHHH-HHHHHHhhheecccCCCcccc
Confidence 55678899999999999997 699988888889988766554
No 26
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=42.09 E-value=1.8e+02 Score=33.82 Aligned_cols=62 Identities=11% Similarity=0.167 Sum_probs=44.3
Q ss_pred cCCeEEEeCCcEEEEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhhcceeEE
Q 007141 44 EDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQ 117 (616)
Q Consensus 44 ~~~~l~v~~a~~v~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gy~~l~~~H~~~w~~lw~r~~i~ 117 (616)
.+..+.+.-+-+-.+.+..++||.. .+.|+..|.+--.-+|+..+++-.++|.+...|..|.
T Consensus 252 l~a~l~fd~~a~~ql~vk~A~SfVS------------a~~A~aNLd~Epd~sf~~vr~~t~aaWnnaLsrirVe 313 (768)
T COG3537 252 LGAGLTFDFTAGSQLEVKLALSFVS------------ADQARANLDAEPDWSFDRVRAATQAAWNNALSRIRVE 313 (768)
T ss_pred ccceEEecCCCCceEEEEeeeeccc------------HHHHhhcCCcCCCccHHHHHHHHHHHHHHHhhheeec
Confidence 4556777654455566788889874 1445555554445689999999999999999877664
No 27
>KOG3778 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.35 E-value=1.7e+02 Score=32.55 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHHHHhhhcceeEEecCC
Q 007141 93 NLSYSDLYTRHLDDYQKLFHRVSIQLSRS 121 (616)
Q Consensus 93 ~~gy~~l~~~H~~~w~~lw~r~~i~L~~~ 121 (616)
.++-.+|+++|..-|.++|.. .+++..+
T Consensus 287 ~~~~~~l~qeH~d~W~~l~~t-Gf~~~~s 314 (603)
T KOG3778|consen 287 DMPAAELLQEHQDLWAQLFST-GFEMKKS 314 (603)
T ss_pred CCcHHHHHHHHHHHHHHHhcC-ceeEecc
Confidence 357888999999999999984 4555543
No 28
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=35.61 E-value=72 Score=26.49 Aligned_cols=64 Identities=20% Similarity=0.409 Sum_probs=46.2
Q ss_pred ccccCceeeceEeeccEEEEEEEe--CCeEEEEEEEeCCCCCcccceeeeecC--CeEEEEEcCCCcEEEEeecc
Q 007141 536 DKWSSGCVKGLKARGGETVSICWK--DGDLHEVGIYSNYSNNDHDSFKTLHYR--GTSVKVNLSAGKIYTFNRQL 606 (616)
Q Consensus 536 ~~W~~gs~~gLrarG~~~V~~~w~--~g~~~~~~i~s~~g~~~~~~~~~~~~~--~~~~~~~~~~G~~~~i~~~~ 606 (616)
..|..+.+.|-..-|+|+=.+.|. .|++ .|++.-|..+. .-+-. .....+.+++|..|.+++.+
T Consensus 12 qs~~~g~leGeV~Ag~f~W~F~W~F~~G~L---~V~PslGRALI----~d~L~RFL~k~DY~LEpGgdY~Ftira 79 (80)
T PF11344_consen 12 QSWQQGCLEGEVSAGGFEWQFQWHFRRGEL---SVEPSLGRALI----QDPLGRFLEKSDYQLEPGGDYSFTIRA 79 (80)
T ss_pred eeccCCcEEEEEEccceEEEEEEEEcCCcE---EEccccchHHH----HhHHHHHHhhcceeccCCCceEEEEec
Confidence 679999999999999999999997 5654 78887776642 11100 02246889999999998644
No 29
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=29.77 E-value=23 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCCCCCcC--CCCcee
Q 007141 355 EVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIA--EDGSIM 397 (616)
Q Consensus 355 ~ll~~~~~a~~~Lg~~~~~~~~~w~~~~~~L~p~~i~--~~G~l~ 397 (616)
.-|....++|+.||++ .+-+.+|.++...+..+++. ..|.|+
T Consensus 8 ~yFGs~~kvA~aLGIs-~~AVsQWGe~VPe~rA~~ie~~T~G~LK 51 (75)
T PRK09744 8 AFFGSKTKLANAAGVR-LASVAAWGELVPEGRAMRLQEASGGELQ 51 (75)
T ss_pred HHhCcHHHHHHHHCCC-HHHHHHHhccCcHHHHHHHHHHhCCcee
Confidence 4567778899999999 88999999998888888765 446665
No 30
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=29.63 E-value=1.2e+02 Score=19.39 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 007141 456 KTALWARLHDQEHAYRMVKRLFN 478 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~ 478 (616)
.+..+++.|+.++|.++|..+.+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34557999999999999999876
No 31
>PRK13270 treF trehalase; Provisional
Probab=28.25 E-value=1.1e+02 Score=35.11 Aligned_cols=33 Identities=12% Similarity=-0.096 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHH
Q 007141 275 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 310 (616)
Q Consensus 275 wla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~ 310 (616)
-++.++..|++ .|.+|++ +.+|.|++=-+||.+
T Consensus 226 ~l~~Mv~~y~~--~~~~~~~-~~lp~l~~E~~fWm~ 258 (549)
T PRK13270 226 VFALMVELFEE--DGVRGAR-RYLDHLKMEYAFWMD 258 (549)
T ss_pred hHHHHHHHHHh--cCHHHHH-HHHHHHHHHHHHHcC
Confidence 45566766665 5788997 589999999999997
No 32
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=27.61 E-value=1.2e+02 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 007141 456 KTALWARLHDQEHAYRMVKRLFN 478 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~ 478 (616)
.+-...++|+.++|.+.|++.++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 46678899999999999999998
No 33
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=27.37 E-value=2.1e+02 Score=32.61 Aligned_cols=48 Identities=10% Similarity=0.261 Sum_probs=35.4
Q ss_pred EEEEeeecCCCCCCCCCCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHHHHHhhhcceeEE
Q 007141 58 LLLVASSSFDGPFINPSDSKKDPTSESMSALQ-SIRNLSYSDLYTRHLDDYQKLFHRVSIQ 117 (616)
Q Consensus 58 l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~gy~~l~~~H~~~w~~lw~r~~i~ 117 (616)
|.+.+++||.. .+.|++.|+ ++...+|++.+++.++.|++..+|+.|+
T Consensus 16 v~vkvgiS~vS------------~e~A~~NL~~E~~~~dFd~v~~~a~~~Wn~~L~rI~V~ 64 (502)
T PF07971_consen 16 VEVKVGISFVS------------VEQARANLEAEIPGWDFDQVRAAARAAWNDALSRIQVE 64 (502)
T ss_dssp EEEEEEEESS-------------HHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHTTEEEE
T ss_pred EEEEEEEcccC------------HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhcCCEEEe
Confidence 67788889863 255666665 4556799999999999999999887774
No 34
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=26.56 E-value=1.3e+02 Score=19.80 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 007141 456 KTALWARLHDQEHAYRMVKRLFN 478 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~ 478 (616)
.+.+...+|+.++|.+.+++.++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHH
Confidence 56788899999999999999998
No 35
>PF13041 PPR_2: PPR repeat family
Probab=25.62 E-value=1.4e+02 Score=21.74 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 007141 456 KTALWARLHDQEHAYRMVKRLFN 478 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~ 478 (616)
.+..+++-|+.++|.++|+++.+
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH
Confidence 45567899999999999999987
No 36
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=23.66 E-value=1.3e+02 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=21.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCcc
Q 007141 456 KTALWARLHDQEHAYRMVKRLFNLVDPEH 484 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~~~~~~~ 484 (616)
.++-..|||+-++|.+++..+|+ ++|+|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~-~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE-IEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH-HTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-hCCCc
Confidence 46677999999999999999999 45543
No 37
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=23.10 E-value=2.3e+02 Score=31.37 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcc--cCCC-----CeEEEC-CCCCC-CCCcc-------CCC
Q 007141 273 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI--EGHD-----GYLETN-PSTSP-EHEFI-------APD 336 (616)
Q Consensus 273 ~awla~~lw~yY~~TgD~~fL~~~~yP~l~e~A~F~~~~l~--~~~~-----G~~~~~-ps~sP-E~~~~-------~~~ 336 (616)
.+.-.+-.|.||..|+|.+|+.+.....++.+.+-|..--. ++++ ..|.+. +...| |.-.. ...
T Consensus 130 L~~~l~La~~y~~~Tgd~~~f~~~~~~A~~~il~~~~~eq~~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~~t 209 (424)
T PF06824_consen 130 LCYFLQLAYQYWKATGDTSFFDEDWLRAVRLILDTWRTEQRPTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVAYT 209 (424)
T ss_dssp HHHHHHHHHHHHHHH--GTTSSHHHHHHHHHHHHHHHHTTG------SSSCS-S---BESBSSGGGS-HHHHT-S----S
T ss_pred hhHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceeeccCCCCCccccCCCcCCcCCCC
Confidence 45556778899999999999977666666666666655332 1111 223332 12222 21110 000
Q ss_pred CC---------ccccccCcHHHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHcCC
Q 007141 337 GK---------LACVSYSSTMDMAIIREVFSAIISAAEVLEKNE-DALVEKVLKSLPR 384 (616)
Q Consensus 337 g~---------~~~~~~n~t~d~~~~r~ll~~~~~a~~~Lg~~~-~~~~~~w~~~~~~ 384 (616)
|- .++.-.=....|+++.-.|+.+.++.+.+..++ .++.++.+++++.
T Consensus 210 Gli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~~~~~~~la~~~~~la~e 267 (424)
T PF06824_consen 210 GLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALGWDDSAELAERARALADE 267 (424)
T ss_dssp SS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHH
T ss_pred CceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 10 111111235789999999999999999887762 1455554444443
No 38
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=22.72 E-value=1.6e+02 Score=19.89 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 007141 453 ITWKTALWARLHDQEHAYRMVKRLFNL 479 (616)
Q Consensus 453 ~a~~~~~~ARLgd~~~A~~~l~~~l~~ 479 (616)
+...++++...|+.++|.+++++.+..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 445677888999999999999999873
No 39
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=21.72 E-value=2.1e+02 Score=18.45 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 007141 456 KTALWARLHDQEHAYRMVKRLFN 478 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~ 478 (616)
.+.+.-++|+-++|.+.+++.++
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 56677889999999999999988
No 40
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=21.14 E-value=1.8e+02 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 007141 456 KTALWARLHDQEHAYRMVKRLFN 478 (616)
Q Consensus 456 ~~~~~ARLgd~~~A~~~l~~~l~ 478 (616)
.+.++.++|+.++|.+++++.+.
T Consensus 5 Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 5 LGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999765
Done!