Query 007143
Match_columns 616
No_of_seqs 379 out of 2854
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 19:31:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1461 Translation initiation 100.0 2E-113 5E-118 910.5 40.2 551 1-611 1-553 (673)
2 PLN02241 glucose-1-phosphate a 100.0 4.8E-48 1E-52 422.6 33.5 355 27-412 2-400 (436)
3 COG1208 GCD1 Nucleoside-diphos 100.0 2.1E-47 4.7E-52 405.5 36.4 319 28-390 1-324 (358)
4 PRK02862 glgC glucose-1-phosph 100.0 2.4E-46 5.1E-51 408.2 33.7 379 28-435 3-429 (429)
5 KOG1462 Translation initiation 100.0 9.4E-47 2E-51 381.8 22.4 373 27-426 8-414 (433)
6 PRK05293 glgC glucose-1-phosph 100.0 1.3E-44 2.8E-49 389.6 33.6 358 27-429 2-379 (380)
7 KOG1322 GDP-mannose pyrophosph 100.0 4.9E-45 1.1E-49 363.0 25.9 345 27-438 8-358 (371)
8 PRK00844 glgC glucose-1-phosph 100.0 6.3E-43 1.4E-47 379.3 32.4 345 27-413 4-382 (407)
9 TIGR02092 glgD glucose-1-phosp 100.0 2E-43 4.2E-48 379.0 27.5 338 28-412 2-354 (369)
10 KOG1460 GDP-mannose pyrophosph 100.0 8E-44 1.7E-48 348.2 21.7 332 27-396 1-357 (407)
11 PRK00725 glgC glucose-1-phosph 100.0 2.1E-42 4.6E-47 376.7 33.4 350 27-416 14-397 (425)
12 TIGR01208 rmlA_long glucose-1- 100.0 2.9E-40 6.2E-45 352.4 35.5 344 30-424 1-352 (353)
13 COG0448 GlgC ADP-glucose pyrop 100.0 6.2E-41 1.3E-45 346.0 28.8 342 28-414 5-363 (393)
14 TIGR02091 glgC glucose-1-phosp 100.0 5.8E-41 1.3E-45 358.8 29.2 344 31-412 1-360 (361)
15 PRK14358 glmU bifunctional N-a 100.0 6.4E-38 1.4E-42 346.7 34.3 367 24-437 3-391 (481)
16 PRK14355 glmU bifunctional N-a 100.0 1.8E-37 3.8E-42 342.2 36.0 332 28-403 3-345 (459)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 5.4E-36 1.2E-40 329.7 35.0 361 29-437 1-382 (451)
18 PRK14352 glmU bifunctional N-a 100.0 6.6E-36 1.4E-40 331.5 35.5 335 27-408 3-352 (482)
19 PRK09451 glmU bifunctional N-a 100.0 1E-35 2.2E-40 328.0 34.9 313 28-394 5-332 (456)
20 cd04197 eIF-2B_epsilon_N The N 100.0 7.1E-36 1.5E-40 297.1 23.4 214 29-245 1-217 (217)
21 PRK14353 glmU bifunctional N-a 100.0 1.4E-34 3E-39 318.2 35.7 363 26-439 3-405 (446)
22 PRK14356 glmU bifunctional N-a 100.0 4.1E-35 8.9E-40 323.3 30.6 353 28-425 5-367 (456)
23 PRK14359 glmU bifunctional N-a 100.0 4E-34 8.6E-39 313.1 35.2 363 27-439 1-392 (430)
24 COG1207 GlmU N-acetylglucosami 100.0 2E-34 4.4E-39 297.2 28.0 355 28-444 2-373 (460)
25 PRK14354 glmU bifunctional N-a 100.0 2E-33 4.4E-38 309.9 34.2 299 27-371 1-309 (458)
26 PRK14357 glmU bifunctional N-a 100.0 4.6E-33 1E-37 306.3 33.7 315 29-395 1-340 (448)
27 PRK14360 glmU bifunctional N-a 100.0 6.6E-32 1.4E-36 297.3 35.7 319 29-395 2-347 (450)
28 cd04198 eIF-2B_gamma_N The N-t 100.0 2.2E-33 4.8E-38 278.6 19.1 209 29-245 1-214 (214)
29 cd02507 eIF-2B_gamma_N_like Th 100.0 4.8E-32 1E-36 269.4 21.5 211 29-245 1-216 (216)
30 TIGR01105 galF UTP-glucose-1-p 100.0 1.4E-30 3.1E-35 269.8 24.1 239 28-301 3-276 (297)
31 COG1209 RfbA dTDP-glucose pyro 100.0 3.1E-31 6.7E-36 260.4 17.9 232 29-303 1-237 (286)
32 cd06425 M1P_guanylylT_B_like_N 100.0 4.1E-30 8.8E-35 258.4 22.7 230 29-302 1-233 (233)
33 PF00483 NTP_transferase: Nucl 100.0 5.5E-30 1.2E-34 259.3 22.9 234 30-303 1-247 (248)
34 cd06428 M1P_guanylylT_A_like_N 100.0 6.1E-30 1.3E-34 261.0 22.5 235 31-301 1-257 (257)
35 PRK10122 GalU regulator GalF; 100.0 9E-30 2E-34 264.3 23.4 241 28-303 3-279 (297)
36 cd02538 G1P_TT_short G1P_TT_sh 100.0 3.5E-28 7.6E-33 245.4 22.7 232 29-301 1-237 (240)
37 PRK15480 glucose-1-phosphate t 100.0 3.6E-28 7.9E-33 251.2 22.9 229 28-302 3-241 (292)
38 TIGR02623 G1P_cyt_trans glucos 100.0 5.2E-28 1.1E-32 246.3 22.3 227 30-303 1-246 (254)
39 cd06422 NTP_transferase_like_1 100.0 9.8E-28 2.1E-32 239.0 21.0 219 30-297 1-221 (221)
40 cd02541 UGPase_prokaryotic Pro 100.0 1E-27 2.2E-32 246.0 21.2 238 29-301 1-264 (267)
41 PRK13389 UTP--glucose-1-phosph 100.0 1.7E-27 3.7E-32 247.7 22.7 240 26-301 6-279 (302)
42 TIGR01207 rmlA glucose-1-phosp 100.0 1.3E-27 2.9E-32 246.7 21.3 231 30-301 1-236 (286)
43 TIGR01099 galU UTP-glucose-1-p 100.0 2.2E-27 4.8E-32 242.4 21.4 234 29-297 1-260 (260)
44 cd04189 G1P_TT_long G1P_TT_lon 100.0 5.4E-27 1.2E-31 235.9 22.6 229 29-303 1-235 (236)
45 cd02524 G1P_cytidylyltransfera 99.9 9.7E-27 2.1E-31 236.9 21.4 225 31-301 1-245 (253)
46 cd04181 NTP_transferase NTP_tr 99.9 2.2E-26 4.8E-31 227.8 21.0 215 31-289 1-217 (217)
47 cd06426 NTP_transferase_like_2 99.9 4.2E-26 9E-31 226.8 22.7 219 31-298 1-220 (220)
48 cd06915 NTP_transferase_WcbM_l 99.9 8.6E-26 1.9E-30 224.4 21.5 220 31-297 1-222 (223)
49 COG1210 GalU UDP-glucose pyrop 99.9 1.4E-24 3E-29 213.6 18.3 243 27-303 3-271 (291)
50 cd02508 ADP_Glucose_PP ADP-glu 99.9 1.5E-23 3.2E-28 205.9 14.9 186 31-288 1-200 (200)
51 cd02523 PC_cytidylyltransferas 99.9 3.7E-23 8.1E-28 207.1 17.3 223 31-297 1-228 (229)
52 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 2.2E-21 4.9E-26 194.4 18.9 218 31-294 1-230 (231)
53 cd02509 GDP-M1P_Guanylyltransf 99.9 2.2E-21 4.8E-26 199.6 15.6 187 29-245 1-202 (274)
54 cd02540 GT2_GlmU_N_bac N-termi 99.8 4.9E-19 1.1E-23 177.0 18.8 218 31-292 1-227 (229)
55 TIGR01479 GMP_PMI mannose-1-ph 99.8 3.1E-19 6.7E-24 196.5 17.3 238 29-297 1-280 (468)
56 PRK05450 3-deoxy-manno-octulos 99.8 6.6E-18 1.4E-22 170.9 22.8 237 28-301 2-244 (245)
57 COG1213 Predicted sugar nucleo 99.8 3.1E-18 6.7E-23 166.2 15.2 222 27-305 2-232 (239)
58 PRK11132 cysE serine acetyltra 99.8 2.5E-19 5.4E-24 181.2 6.7 173 257-439 36-240 (273)
59 cd02517 CMP-KDO-Synthetase CMP 99.8 5.7E-17 1.2E-21 163.5 22.4 227 29-299 2-238 (239)
60 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.7 1.2E-16 2.7E-21 159.6 15.5 151 277-439 42-207 (231)
61 PRK13368 3-deoxy-manno-octulos 99.7 8.4E-16 1.8E-20 154.8 21.1 228 28-299 2-236 (238)
62 PRK15460 cpsB mannose-1-phosph 99.7 1.5E-15 3.3E-20 166.1 16.3 166 27-208 4-187 (478)
63 cd05636 LbH_G1P_TT_C_like Puta 99.6 5.1E-15 1.1E-19 140.6 16.4 120 323-442 13-157 (163)
64 COG0836 {ManC} Mannose-1-phosp 99.6 1.4E-14 3E-19 146.4 16.0 245 28-297 1-281 (333)
65 cd04745 LbH_paaY_like paaY-lik 99.6 1.6E-14 3.4E-19 136.1 15.3 109 330-438 3-120 (155)
66 cd05636 LbH_G1P_TT_C_like Puta 99.6 1.8E-14 3.9E-19 136.8 15.3 115 321-435 29-162 (163)
67 TIGR02287 PaaY phenylacetic ac 99.6 1.1E-14 2.4E-19 141.4 13.8 108 330-437 11-127 (192)
68 cd04646 LbH_Dynactin_6 Dynacti 99.6 2.2E-14 4.8E-19 136.2 15.0 109 330-438 2-125 (164)
69 PRK13627 carnitine operon prot 99.6 3E-14 6.5E-19 138.8 14.4 107 329-435 12-127 (196)
70 PLN02472 uncharacterized prote 99.6 7.3E-14 1.6E-18 140.3 15.3 109 330-438 62-185 (246)
71 COG0663 PaaY Carbonic anhydras 99.5 4.1E-14 8.9E-19 132.4 12.2 108 330-437 14-130 (176)
72 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 6.3E-14 1.4E-18 142.8 14.8 122 321-442 23-166 (254)
73 PLN02296 carbonate dehydratase 99.5 6.9E-14 1.5E-18 142.3 14.6 109 330-438 55-178 (269)
74 cd04650 LbH_FBP Ferripyochelin 99.5 1.7E-13 3.6E-18 128.9 15.1 109 330-438 3-120 (154)
75 TIGR01852 lipid_A_lpxA acyl-[a 99.5 1.3E-13 2.9E-18 140.4 15.3 121 322-442 23-165 (254)
76 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 1.8E-13 3.9E-18 139.5 15.7 117 323-439 7-145 (254)
77 TIGR03308 phn_thr-fam phosphon 99.5 1.7E-13 3.7E-18 134.6 14.7 107 330-437 5-143 (204)
78 cd04645 LbH_gamma_CA_like Gamm 99.5 2.8E-13 6.1E-18 127.3 14.8 109 330-438 2-119 (153)
79 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 4.4E-13 9.5E-18 130.9 16.3 80 324-403 12-92 (193)
80 COG4750 LicC CTP:phosphocholin 99.5 4.6E-14 1E-18 131.7 8.4 106 29-143 1-106 (231)
81 TIGR01852 lipid_A_lpxA acyl-[a 99.5 5.6E-13 1.2E-17 135.8 16.4 115 323-437 6-142 (254)
82 PRK05289 UDP-N-acetylglucosami 99.5 3.6E-13 7.7E-18 137.7 14.1 51 327-377 14-65 (262)
83 TIGR00454 conserved hypothetic 99.5 8.9E-13 1.9E-17 127.5 15.4 115 29-156 1-117 (183)
84 PRK05289 UDP-N-acetylglucosami 99.5 4.9E-13 1.1E-17 136.6 14.0 123 320-442 25-169 (262)
85 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.1E-12 2.3E-17 134.2 15.5 18 397-414 203-220 (338)
86 PRK12461 UDP-N-acetylglucosami 99.5 1.1E-12 2.3E-17 133.3 15.3 52 327-378 11-63 (255)
87 cd03359 LbH_Dynactin_5 Dynacti 99.5 1.5E-12 3.2E-17 123.5 15.2 107 333-439 7-132 (161)
88 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 8.6E-13 1.9E-17 132.5 13.8 107 330-437 97-214 (269)
89 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 2.2E-12 4.7E-17 135.6 17.4 70 325-394 101-172 (324)
90 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 1.5E-12 3.2E-17 136.9 15.3 116 322-437 116-258 (324)
91 COG1044 LpxD UDP-3-O-[3-hydrox 99.4 1.1E-12 2.4E-17 134.0 13.7 112 326-437 128-265 (338)
92 cd03350 LbH_THP_succinylT 2,3, 99.4 2.1E-12 4.5E-17 119.4 14.2 74 364-437 33-116 (139)
93 cd03358 LbH_WxcM_N_like WcxM-l 99.4 1.5E-12 3.2E-17 116.7 12.0 100 330-430 1-101 (119)
94 cd04652 LbH_eIF2B_gamma_C eIF- 99.4 1.5E-12 3.2E-17 108.7 10.9 79 348-427 2-80 (81)
95 cd05787 LbH_eIF2B_epsilon eIF- 99.4 1.5E-12 3.2E-17 107.8 10.6 79 347-425 1-79 (79)
96 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3.2E-12 7E-17 135.9 15.5 69 326-394 111-181 (343)
97 cd03356 LbH_G1P_AT_C_like Left 99.4 1.8E-12 4E-17 107.5 10.6 79 347-425 1-79 (79)
98 PLN02917 CMP-KDO synthetase 99.4 3.6E-11 7.8E-16 124.8 22.7 235 27-301 46-287 (293)
99 PRK12461 UDP-N-acetylglucosami 99.4 3.2E-12 7E-17 129.7 14.4 119 321-439 23-162 (255)
100 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3.9E-12 8.4E-17 135.3 15.0 114 323-436 126-265 (343)
101 cd00710 LbH_gamma_CA Gamma car 99.4 1E-11 2.2E-16 118.4 15.8 111 326-437 19-139 (167)
102 PRK14353 glmU bifunctional N-a 99.4 5.5E-12 1.2E-16 139.0 15.6 111 327-437 280-415 (446)
103 cd00710 LbH_gamma_CA Gamma car 99.4 9.9E-12 2.1E-16 118.5 15.2 100 329-429 4-114 (167)
104 PF12804 NTP_transf_3: MobA-li 99.4 7.5E-12 1.6E-16 118.0 13.8 110 31-156 1-114 (160)
105 cd04646 LbH_Dynactin_6 Dynacti 99.4 1.2E-11 2.7E-16 117.4 15.0 105 324-433 14-132 (164)
106 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 6.7E-12 1.4E-16 126.1 13.6 108 323-436 108-232 (269)
107 PRK11830 dapD 2,3,4,5-tetrahyd 99.4 5.9E-12 1.3E-16 127.7 12.5 75 363-437 133-217 (272)
108 cd04745 LbH_paaY_like paaY-lik 99.3 2.1E-11 4.5E-16 114.8 15.4 103 324-437 15-125 (155)
109 TIGR01173 glmU UDP-N-acetylglu 99.3 7E-12 1.5E-16 138.3 13.9 77 324-401 276-353 (451)
110 cd03350 LbH_THP_succinylT 2,3, 99.3 2.7E-11 5.8E-16 111.9 14.7 105 325-437 11-125 (139)
111 cd03353 LbH_GlmU_C N-acetyl-gl 99.3 1.8E-11 3.9E-16 119.5 14.1 65 330-394 70-134 (193)
112 cd04650 LbH_FBP Ferripyochelin 99.3 5E-11 1.1E-15 112.1 15.8 100 324-428 15-122 (154)
113 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 3.8E-11 8.3E-16 118.2 15.7 69 326-394 18-107 (205)
114 cd03359 LbH_Dynactin_5 Dynacti 99.3 4.8E-11 1E-15 113.1 15.2 100 325-429 19-134 (161)
115 TIGR03570 NeuD_NnaD sugar O-ac 99.3 3.3E-11 7.1E-16 117.6 14.4 90 340-429 94-186 (201)
116 PLN02296 carbonate dehydratase 99.3 2.7E-11 5.9E-16 123.4 14.1 100 324-428 67-180 (269)
117 TIGR02287 PaaY phenylacetic ac 99.3 3.3E-11 7.1E-16 117.2 14.0 100 323-427 22-129 (192)
118 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 2E-11 4.4E-16 101.9 10.7 79 330-409 2-80 (81)
119 cd04649 LbH_THP_succinylT_puta 99.3 3.9E-11 8.3E-16 109.6 13.2 100 334-437 2-112 (147)
120 KOG1461 Translation initiation 99.3 5.5E-12 1.2E-16 136.5 8.9 92 325-417 331-423 (673)
121 PLN02472 uncharacterized prote 99.3 4.3E-11 9.4E-16 120.4 14.8 106 323-439 73-192 (246)
122 cd05824 LbH_M1P_guanylylT_C Ma 99.3 2E-11 4.4E-16 101.6 10.4 75 350-424 4-79 (80)
123 cd03360 LbH_AT_putative Putati 99.3 5E-11 1.1E-15 115.3 14.7 67 363-429 115-183 (197)
124 PRK14355 glmU bifunctional N-a 99.3 3.3E-11 7.2E-16 133.3 14.8 109 334-442 256-371 (459)
125 PRK14356 glmU bifunctional N-a 99.3 2.5E-11 5.5E-16 134.1 13.4 76 325-401 285-361 (456)
126 COG1043 LpxA Acyl-[acyl carrie 99.3 1.9E-11 4.1E-16 118.5 10.4 114 323-436 11-146 (260)
127 cd03356 LbH_G1P_AT_C_like Left 99.3 3.2E-11 6.9E-16 100.0 10.5 77 329-406 1-78 (79)
128 cd04651 LbH_G1P_AT_C Glucose-1 99.3 3.4E-11 7.4E-16 105.5 10.7 79 352-432 2-80 (104)
129 COG2266 GTP:adenosylcobinamide 99.3 3.5E-11 7.6E-16 112.0 11.2 109 29-154 1-112 (177)
130 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 5E-11 1.1E-15 120.9 12.9 106 326-436 108-235 (272)
131 TIGR00466 kdsB 3-deoxy-D-manno 99.3 4.8E-10 1E-14 113.2 20.0 230 31-294 2-237 (238)
132 TIGR03310 matur_ygfJ molybdenu 99.2 1.1E-10 2.4E-15 112.9 14.6 113 31-156 2-118 (188)
133 cd05824 LbH_M1P_guanylylT_C Ma 99.2 6.3E-11 1.4E-15 98.6 10.8 77 330-406 2-79 (80)
134 cd04182 GT_2_like_f GT_2_like_ 99.2 1E-10 2.2E-15 112.6 13.6 112 29-155 1-118 (186)
135 cd04645 LbH_gamma_CA_like Gamm 99.2 1.6E-10 3.5E-15 108.5 14.6 83 324-406 14-105 (153)
136 COG0663 PaaY Carbonic anhydras 99.2 1.2E-10 2.5E-15 109.3 13.3 107 322-439 24-138 (176)
137 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 1.7E-10 3.7E-15 113.7 15.3 65 330-394 4-70 (205)
138 PRK14360 glmU bifunctional N-a 99.2 4.9E-11 1.1E-15 131.6 12.2 62 346-407 314-376 (450)
139 COG1207 GlmU N-acetylglucosami 99.2 3.4E-11 7.5E-16 125.7 10.1 100 322-422 263-363 (460)
140 TIGR03308 phn_thr-fam phosphon 99.2 9.7E-11 2.1E-15 115.1 12.8 112 327-439 19-155 (204)
141 cd04651 LbH_G1P_AT_C Glucose-1 99.2 1.2E-10 2.6E-15 102.1 11.9 79 334-414 2-80 (104)
142 PRK14359 glmU bifunctional N-a 99.2 1E-10 2.2E-15 128.3 12.6 84 345-428 298-399 (430)
143 PRK09677 putative lipopolysacc 99.2 2.4E-10 5.3E-15 111.4 13.9 114 325-438 41-176 (192)
144 PRK14358 glmU bifunctional N-a 99.2 8.6E-11 1.9E-15 130.6 11.7 109 322-432 283-392 (481)
145 PRK10502 putative acyl transfe 99.2 1.7E-10 3.6E-15 111.6 12.1 111 327-439 51-171 (182)
146 cd05635 LbH_unknown Uncharacte 99.2 2.7E-10 5.8E-15 99.2 12.1 86 325-412 9-95 (101)
147 PRK09451 glmU bifunctional N-a 99.2 1.2E-10 2.6E-15 128.8 11.9 70 324-394 280-350 (456)
148 TIGR03536 DapD_gpp 2,3,4,5-tet 99.2 2.1E-10 4.5E-15 116.3 12.2 103 331-437 176-289 (341)
149 PRK14352 glmU bifunctional N-a 99.2 2.3E-10 4.9E-15 127.5 13.9 110 323-433 285-418 (482)
150 PRK13627 carnitine operon prot 99.2 4E-10 8.6E-15 110.0 13.8 97 325-426 26-130 (196)
151 cd03360 LbH_AT_putative Putati 99.2 4.3E-10 9.4E-15 108.7 13.6 93 340-437 91-185 (197)
152 cd02513 CMP-NeuAc_Synthase CMP 99.2 1.1E-09 2.4E-14 108.9 16.9 208 29-298 2-220 (223)
153 cd05787 LbH_eIF2B_epsilon eIF- 99.1 2.5E-10 5.5E-15 94.3 9.9 71 365-436 2-72 (79)
154 TIGR00453 ispD 2-C-methyl-D-er 99.1 2.8E-09 6E-14 105.9 19.0 111 31-155 2-118 (217)
155 PRK14357 glmU bifunctional N-a 99.1 2.1E-10 4.6E-15 126.5 11.7 63 347-409 308-371 (448)
156 COG1208 GCD1 Nucleoside-diphos 99.1 3.6E-10 7.8E-15 120.7 12.7 96 336-439 253-349 (358)
157 TIGR01172 cysE serine O-acetyl 99.1 4.9E-10 1.1E-14 106.3 12.2 99 327-437 55-158 (162)
158 TIGR03570 NeuD_NnaD sugar O-ac 99.1 7E-10 1.5E-14 108.3 13.4 104 329-439 95-200 (201)
159 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.1 5.1E-10 1.1E-14 112.1 12.5 90 323-412 94-194 (231)
160 PRK14354 glmU bifunctional N-a 99.1 4.4E-10 9.4E-15 124.4 13.2 61 347-407 318-379 (458)
161 TIGR03535 DapD_actino 2,3,4,5- 99.1 5.3E-10 1.2E-14 112.9 12.4 103 331-438 151-265 (319)
162 PRK09527 lacA galactoside O-ac 99.1 7.3E-10 1.6E-14 108.4 12.1 110 330-439 58-178 (203)
163 KOG3121 Dynactin, subunit p25 99.1 1.4E-10 2.9E-15 103.1 6.1 98 345-442 33-147 (184)
164 cd03358 LbH_WxcM_N_like WcxM-l 99.1 6E-10 1.3E-14 99.7 10.5 89 349-437 2-102 (119)
165 cd04649 LbH_THP_succinylT_puta 99.1 1.5E-09 3.2E-14 99.2 12.4 16 363-378 48-63 (147)
166 COG2171 DapD Tetrahydrodipicol 99.1 5.4E-10 1.2E-14 110.6 10.1 106 332-437 107-223 (271)
167 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 1.6E-09 3.5E-14 109.9 12.5 105 335-442 174-288 (341)
168 PLN02694 serine O-acetyltransf 99.0 7.9E-10 1.7E-14 112.3 10.1 74 363-439 181-259 (294)
169 cd02503 MobA MobA catalyzes th 99.0 1.1E-09 2.4E-14 105.4 10.8 105 29-153 1-109 (181)
170 COG2068 Uncharacterized MobA-r 99.0 2.4E-09 5.2E-14 102.6 12.2 117 27-156 4-125 (199)
171 PRK10092 maltose O-acetyltrans 99.0 3.2E-09 6.8E-14 102.6 12.5 95 343-437 71-174 (183)
172 cd05635 LbH_unknown Uncharacte 99.0 4.3E-09 9.3E-14 91.7 12.2 82 344-428 10-93 (101)
173 PRK09382 ispDF bifunctional 2- 99.0 2.6E-08 5.7E-13 106.7 20.7 116 27-155 4-123 (378)
174 TIGR03202 pucB xanthine dehydr 99.0 5.8E-09 1.3E-13 101.4 12.9 114 29-154 1-122 (190)
175 COG1043 LpxA Acyl-[acyl carrie 99.0 2.8E-09 6.2E-14 103.5 10.0 123 320-442 26-170 (260)
176 PRK00317 mobA molybdopterin-gu 99.0 6.1E-09 1.3E-13 101.5 12.4 110 27-155 2-116 (193)
177 PRK09527 lacA galactoside O-ac 99.0 6.1E-09 1.3E-13 101.9 12.1 76 362-437 75-166 (203)
178 PRK05293 glgC glucose-1-phosph 98.9 4.9E-09 1.1E-13 113.2 12.3 91 341-434 272-362 (380)
179 cd03357 LbH_MAT_GAT Maltose O- 98.9 1.1E-08 2.4E-13 97.8 12.8 95 343-437 60-163 (169)
180 cd00208 LbetaH Left-handed par 98.9 7.1E-09 1.5E-13 84.9 9.7 75 347-429 2-77 (78)
181 cd04647 LbH_MAT_like Maltose O 98.9 1.1E-08 2.4E-13 89.9 11.5 83 348-430 4-92 (109)
182 TIGR02665 molyb_mobA molybdopt 98.9 1.3E-08 2.9E-13 98.3 13.1 110 29-155 1-115 (186)
183 cd04647 LbH_MAT_like Maltose O 98.9 9.2E-09 2E-13 90.4 10.7 102 327-438 1-104 (109)
184 cd02516 CDP-ME_synthetase CDP- 98.9 1.7E-08 3.6E-13 100.1 13.8 115 30-155 2-123 (218)
185 cd03354 LbH_SAT Serine acetylt 98.9 1.4E-08 3E-13 88.4 11.2 64 363-431 23-89 (101)
186 KOG1462 Translation initiation 98.9 4E-09 8.6E-14 108.8 8.8 82 330-412 337-418 (433)
187 PRK00155 ispD 2-C-methyl-D-ery 98.9 1.4E-08 3.1E-13 101.6 12.7 115 28-155 3-123 (227)
188 PRK09677 putative lipopolysacc 98.9 1.4E-08 3E-13 99.1 11.8 93 345-437 43-165 (192)
189 PRK02726 molybdopterin-guanine 98.9 1.6E-08 3.5E-13 99.3 12.4 110 27-154 6-119 (200)
190 cd03357 LbH_MAT_GAT Maltose O- 98.9 2E-08 4.4E-13 96.0 11.8 75 363-437 63-153 (169)
191 TIGR02091 glgC glucose-1-phosp 98.9 1.2E-08 2.5E-13 109.4 11.3 81 348-430 280-360 (361)
192 TIGR02092 glgD glucose-1-phosp 98.9 9.1E-09 2E-13 110.7 10.5 80 350-432 277-356 (369)
193 PLN02728 2-C-methyl-D-erythrit 98.9 3E-08 6.4E-13 100.7 13.4 118 26-156 22-146 (252)
194 PLN02739 serine acetyltransfer 98.8 1E-08 2.2E-13 106.2 9.6 44 396-439 257-304 (355)
195 cd00208 LbetaH Left-handed par 98.8 2.3E-08 5.1E-13 81.8 9.9 73 363-435 1-77 (78)
196 PRK10502 putative acyl transfe 98.8 2.7E-08 5.8E-13 96.3 11.8 92 346-437 52-159 (182)
197 PRK11132 cysE serine acetyltra 98.8 6.4E-08 1.4E-12 98.5 14.8 91 327-428 141-235 (273)
198 PLN02357 serine acetyltransfer 98.8 1.5E-08 3.2E-13 105.9 10.3 43 395-437 277-323 (360)
199 cd02518 GT2_SpsF SpsF is a gly 98.8 3.2E-08 6.9E-13 99.5 12.2 109 31-156 2-116 (233)
200 PRK10191 putative acyl transfe 98.8 3E-08 6.6E-13 92.0 10.9 31 398-428 94-124 (146)
201 PRK10092 maltose O-acetyltrans 98.8 4.7E-08 1E-12 94.4 12.6 83 347-437 69-164 (183)
202 TIGR03584 PseF pseudaminic aci 98.8 1.7E-07 3.8E-12 93.5 17.1 206 31-298 2-217 (222)
203 PRK13385 2-C-methyl-D-erythrit 98.8 5.5E-08 1.2E-12 97.6 13.2 117 29-155 3-125 (230)
204 PLN02241 glucose-1-phosphate a 98.8 2E-08 4.3E-13 110.4 10.8 100 328-434 316-435 (436)
205 COG1045 CysE Serine acetyltran 98.8 2.9E-08 6.2E-13 94.4 9.6 93 333-439 67-166 (194)
206 PRK02862 glgC glucose-1-phosph 98.8 2.1E-08 4.5E-13 110.0 9.6 100 327-428 308-428 (429)
207 cd05825 LbH_wcaF_like wcaF-lik 98.8 8.4E-08 1.8E-12 84.5 11.5 84 345-430 3-90 (107)
208 TIGR01208 rmlA_long glucose-1- 98.8 3.8E-08 8.2E-13 105.2 10.8 88 337-431 246-339 (353)
209 PLN02694 serine O-acetyltransf 98.8 3.3E-08 7.2E-13 100.6 9.7 84 327-413 160-247 (294)
210 KOG3121 Dynactin, subunit p25 98.7 1.6E-08 3.4E-13 90.1 6.3 104 325-439 31-150 (184)
211 PRK14489 putative bifunctional 98.7 7E-08 1.5E-12 103.6 12.6 113 28-155 5-120 (366)
212 COG2171 DapD Tetrahydrodipicol 98.7 4.2E-08 9.2E-13 97.3 9.9 95 321-415 114-219 (271)
213 PRK00725 glgC glucose-1-phosph 98.7 2.8E-08 6.1E-13 108.9 9.6 73 358-432 323-395 (425)
214 cd03349 LbH_XAT Xenobiotic acy 98.7 7.2E-08 1.6E-12 89.6 10.7 46 393-438 70-119 (145)
215 cd03354 LbH_SAT Serine acetylt 98.7 1E-07 2.2E-12 82.9 10.9 61 330-395 5-70 (101)
216 TIGR03535 DapD_actino 2,3,4,5- 98.7 9.1E-08 2E-12 96.9 11.8 84 324-411 162-256 (319)
217 KOG4042 Dynactin subunit p27/W 98.7 1.8E-08 3.9E-13 90.5 5.0 104 327-430 8-129 (190)
218 cd04180 UGPase_euk_like Eukary 98.7 7.7E-08 1.7E-12 98.5 10.1 64 30-96 2-76 (266)
219 PRK00844 glgC glucose-1-phosph 98.7 8.2E-08 1.8E-12 104.7 10.8 71 359-431 312-382 (407)
220 cd05825 LbH_wcaF_like wcaF-lik 98.7 2.1E-07 4.5E-12 81.9 11.1 34 402-435 56-89 (107)
221 COG0448 GlgC ADP-glucose pyrop 98.7 7E-08 1.5E-12 101.2 9.3 93 338-433 272-364 (393)
222 PRK10191 putative acyl transfe 98.6 2.1E-07 4.6E-12 86.3 10.9 11 332-342 46-56 (146)
223 TIGR01172 cysE serine O-acetyl 98.6 2.2E-07 4.8E-12 88.1 11.2 31 328-358 62-94 (162)
224 COG1212 KdsB CMP-2-keto-3-deox 98.6 5E-06 1.1E-10 80.7 20.1 236 28-301 3-242 (247)
225 PLN02357 serine acetyltransfer 98.6 2E-07 4.4E-12 97.5 11.2 83 328-413 227-313 (360)
226 KOG1460 GDP-mannose pyrophosph 98.6 1.4E-07 3E-12 94.2 9.0 91 340-430 283-387 (407)
227 PRK00560 molybdopterin-guanine 98.6 2.7E-07 5.9E-12 90.3 10.4 51 27-83 7-58 (196)
228 PLN02739 serine acetyltransfer 98.6 2.5E-07 5.4E-12 96.1 10.3 38 400-437 255-292 (355)
229 cd04193 UDPGlcNAc_PPase UDPGlc 98.6 1.8E-06 3.9E-11 90.7 16.9 165 26-207 13-222 (323)
230 PF01128 IspD: 2-C-methyl-D-er 98.6 5.4E-07 1.2E-11 89.5 12.2 112 29-155 1-119 (221)
231 COG0110 WbbJ Acetyltransferase 98.6 3.8E-07 8.2E-12 88.6 10.8 96 344-439 66-171 (190)
232 COG0746 MobA Molybdopterin-gua 98.6 2.7E-07 5.9E-12 89.7 9.6 106 27-154 3-113 (192)
233 PRK14490 putative bifunctional 98.5 1E-06 2.2E-11 94.7 12.3 107 27-152 173-283 (369)
234 PRK14500 putative bifunctional 98.4 1.7E-06 3.6E-11 91.8 11.6 110 26-153 158-270 (346)
235 KOG1322 GDP-mannose pyrophosph 98.3 6E-07 1.3E-11 91.3 6.0 90 325-414 262-352 (371)
236 COG1211 IspD 4-diphosphocytidy 98.3 7E-06 1.5E-10 81.5 13.1 114 27-151 3-123 (230)
237 PTZ00339 UDP-N-acetylglucosami 98.3 1.8E-05 4E-10 86.9 16.4 165 26-207 104-316 (482)
238 cd03349 LbH_XAT Xenobiotic acy 98.3 5.2E-06 1.1E-10 77.2 10.1 90 348-437 4-108 (145)
239 KOG4750 Serine O-acetyltransfe 98.2 2.6E-06 5.6E-11 82.1 6.7 48 392-439 196-247 (269)
240 COG0110 WbbJ Acetyltransferase 98.2 1E-05 2.2E-10 78.5 11.0 76 362-437 67-159 (190)
241 TIGR02353 NRPS_term_dom non-ri 98.2 5.8E-06 1.3E-10 95.7 10.4 67 362-433 131-197 (695)
242 TIGR02353 NRPS_term_dom non-ri 98.2 6.9E-06 1.5E-10 95.0 10.7 69 363-436 617-685 (695)
243 COG1045 CysE Serine acetyltran 98.0 2.5E-05 5.5E-10 74.5 8.3 84 327-413 67-154 (194)
244 KOG4042 Dynactin subunit p27/W 97.8 1.9E-05 4.1E-10 71.3 4.5 104 323-437 22-142 (190)
245 PF02348 CTP_transf_3: Cytidyl 97.8 0.00055 1.2E-08 67.7 14.6 113 31-157 2-118 (217)
246 KOG4750 Serine O-acetyltransfe 97.6 0.00018 3.8E-09 69.7 7.2 67 363-437 169-235 (269)
247 COG4801 Predicted acyltransfer 97.4 0.00054 1.2E-08 66.7 8.0 74 355-428 26-100 (277)
248 COG1083 NeuA CMP-N-acetylneura 97.4 0.0069 1.5E-07 58.8 15.3 211 28-301 3-222 (228)
249 PF00132 Hexapep: Bacterial tr 97.3 0.00018 4E-09 49.9 2.2 33 397-429 2-34 (36)
250 PF14602 Hexapep_2: Hexapeptid 97.2 0.00045 9.9E-09 47.4 3.9 29 399-429 4-32 (34)
251 cd00897 UGPase_euk Eukaryotic 97.1 0.011 2.4E-07 61.4 14.7 160 28-207 3-201 (300)
252 PLN02474 UTP--glucose-1-phosph 97.1 0.082 1.8E-06 58.2 21.3 160 28-207 79-277 (469)
253 PF14602 Hexapep_2: Hexapeptid 97.0 0.00072 1.6E-08 46.4 3.2 12 365-376 4-15 (34)
254 PF00132 Hexapep: Bacterial tr 97.0 0.00041 8.9E-09 48.1 2.0 33 403-435 2-34 (36)
255 COG4801 Predicted acyltransfer 97.0 0.0023 5.1E-08 62.3 7.7 91 322-413 11-103 (277)
256 PRK00576 molybdopterin-guanine 97.0 0.0017 3.7E-08 62.4 6.8 91 49-154 3-101 (178)
257 PLN02435 probable UDP-N-acetyl 96.8 0.038 8.3E-07 61.1 16.5 198 26-250 114-364 (493)
258 PF07959 Fucokinase: L-fucokin 96.7 0.0047 1E-07 67.4 8.7 51 352-402 274-324 (414)
259 COG1861 SpsF Spore coat polysa 96.7 0.022 4.9E-07 55.6 11.7 110 29-156 3-120 (241)
260 PRK13412 fkp bifunctional fuco 96.7 0.0073 1.6E-07 71.5 9.9 135 132-295 154-305 (974)
261 cd06424 UGGPase UGGPase cataly 96.3 0.012 2.7E-07 61.4 8.2 66 30-98 2-80 (315)
262 PLN02830 UDP-sugar pyrophospho 96.1 0.16 3.6E-06 57.8 16.4 135 28-170 128-310 (615)
263 COG4284 UDP-glucose pyrophosph 95.9 0.098 2.1E-06 56.8 12.8 66 26-94 103-174 (472)
264 PF01704 UDPGP: UTP--glucose-1 95.5 0.32 6.9E-06 53.2 15.0 161 27-207 55-256 (420)
265 TIGR03552 F420_cofC 2-phospho- 95.5 0.062 1.3E-06 52.2 8.8 85 59-154 30-117 (195)
266 PF07959 Fucokinase: L-fucokin 94.7 0.066 1.4E-06 58.5 6.9 71 363-435 268-338 (414)
267 cd00761 Glyco_tranf_GTA_type G 90.9 1.5 3.3E-05 38.8 9.0 97 53-154 2-103 (156)
268 PF00535 Glycos_transf_2: Glyc 76.6 14 0.0003 33.3 8.4 99 53-156 3-106 (169)
269 PRK13412 fkp bifunctional fuco 76.4 3.1 6.7E-05 50.0 4.7 40 358-397 332-372 (974)
270 PF04519 Bactofilin: Polymer-f 72.9 8 0.00017 33.2 5.3 88 335-427 4-93 (101)
271 cd04195 GT2_AmsE_like GT2_AmsE 65.0 58 0.0013 30.8 10.2 97 53-155 3-107 (201)
272 cd06423 CESA_like CESA_like is 62.6 52 0.0011 29.4 9.0 99 53-155 2-105 (180)
273 cd04186 GT_2_like_c Subfamily 61.8 87 0.0019 28.1 10.4 95 53-155 2-101 (166)
274 cd06439 CESA_like_1 CESA_like_ 60.8 94 0.002 30.6 11.2 103 44-153 23-134 (251)
275 COG1664 CcmA Integral membrane 59.3 47 0.001 30.9 7.8 96 332-431 22-118 (146)
276 cd02510 pp-GalNAc-T pp-GalNAc- 58.1 76 0.0016 32.6 10.2 101 53-156 3-111 (299)
277 cd04188 DPG_synthase DPG_synth 57.7 61 0.0013 31.2 8.9 98 53-154 2-108 (211)
278 cd06438 EpsO_like EpsO protein 53.4 1.3E+02 0.0029 28.0 10.4 96 53-154 2-107 (183)
279 KOG2388 UDP-N-acetylglucosamin 52.0 16 0.00035 40.1 4.0 68 24-94 93-175 (477)
280 cd06427 CESA_like_2 CESA_like_ 50.4 1.4E+02 0.003 29.4 10.4 99 53-155 6-111 (241)
281 cd06434 GT2_HAS Hyaluronan syn 46.1 1.6E+02 0.0035 28.5 10.0 95 53-154 5-103 (235)
282 cd06433 GT_2_WfgS_like WfgS an 44.9 1.3E+02 0.0027 28.0 8.8 94 54-155 4-102 (202)
283 cd02511 Beta4Glucosyltransfera 41.0 1.6E+02 0.0034 28.9 9.0 88 53-152 5-95 (229)
284 cd02525 Succinoglycan_BP_ExoA 40.8 1.7E+02 0.0037 28.4 9.3 97 53-155 5-108 (249)
285 PF04519 Bactofilin: Polymer-f 39.7 50 0.0011 28.2 4.5 60 351-412 36-96 (101)
286 cd04179 DPM_DPG-synthase_like 38.7 1.8E+02 0.0039 26.8 8.6 95 54-155 3-106 (185)
287 cd06435 CESA_NdvC_like NdvC_li 37.4 3.1E+02 0.0067 26.5 10.5 95 53-153 3-109 (236)
288 PLN02726 dolichyl-phosphate be 34.2 3.2E+02 0.0069 26.9 10.1 100 53-155 14-120 (243)
289 cd04184 GT2_RfbC_Mx_like Myxoc 33.4 3.2E+02 0.0069 25.5 9.6 98 53-155 6-110 (202)
290 PRK10018 putative glycosyl tra 33.1 4E+02 0.0086 27.4 10.7 96 53-155 10-112 (279)
291 cd04185 GT_2_like_b Subfamily 32.8 3.5E+02 0.0075 25.4 9.8 97 54-154 3-105 (202)
292 COG0381 WecB UDP-N-acetylgluco 32.2 1.7E+02 0.0037 31.7 7.8 89 65-156 22-116 (383)
293 COG1664 CcmA Integral membrane 31.5 1.6E+02 0.0034 27.4 6.6 60 352-412 58-117 (146)
294 PRK11204 N-glycosyltransferase 30.9 2.2E+02 0.0048 30.8 8.9 98 53-155 59-161 (420)
295 cd04192 GT_2_like_e Subfamily 30.7 3E+02 0.0065 26.1 9.1 98 53-155 2-109 (229)
296 TIGR02990 ectoine_eutA ectoine 30.1 5.5E+02 0.012 25.9 10.8 118 27-154 70-205 (239)
297 cd06442 DPM1_like DPM1_like re 29.9 2.2E+02 0.0047 27.2 7.8 97 53-154 2-104 (224)
298 cd06420 GT2_Chondriotin_Pol_N 29.3 4.1E+02 0.0089 24.2 9.4 96 54-153 3-104 (182)
299 PRK10714 undecaprenyl phosphat 28.5 2.9E+02 0.0062 29.1 8.9 89 62-154 25-116 (325)
300 cd04196 GT_2_like_d Subfamily 28.3 3.6E+02 0.0078 25.3 9.0 92 53-152 3-103 (214)
301 PTZ00260 dolichyl-phosphate be 28.2 3.9E+02 0.0084 28.2 9.9 98 53-155 75-189 (333)
302 cd04187 DPM1_like_bac Bacteria 27.6 2.1E+02 0.0047 26.4 7.2 94 54-152 3-104 (181)
303 cd02526 GT2_RfbF_like RfbF is 26.0 5.6E+02 0.012 24.6 10.1 87 57-150 7-97 (237)
304 PF01983 CofC: Guanylyl transf 25.2 76 0.0016 31.6 3.5 108 29-153 1-113 (217)
305 TIGR00285 DNA-binding protein 24.1 91 0.002 26.3 3.2 29 54-82 4-34 (87)
306 cd02520 Glucosylceramide_synth 23.1 4.3E+02 0.0094 24.8 8.5 93 53-152 6-110 (196)
307 COG2179 Predicted hydrolase of 23.0 3.2E+02 0.007 26.1 7.0 100 52-172 38-140 (175)
308 PRK14583 hmsR N-glycosyltransf 22.1 3.9E+02 0.0085 29.3 8.9 99 52-155 79-182 (444)
309 COG4917 EutP Ethanolamine util 21.6 3.9E+02 0.0085 24.4 6.8 70 25-94 63-143 (148)
310 cd02522 GT_2_like_a GT_2_like_ 21.0 5.3E+02 0.011 24.4 8.7 90 53-154 4-98 (221)
311 cd06913 beta3GnTL1_like Beta 1 20.1 6.2E+02 0.013 24.1 9.0 98 53-155 2-111 (219)
No 1
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-113 Score=910.45 Aligned_cols=551 Identities=52% Similarity=0.848 Sum_probs=475.6
Q ss_pred CcccchHHHHHHHHhcccCCCCcccCCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEE
Q 007143 1 MGAQKKRAAAAAAAARVSEDPDDLARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVF 80 (616)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv 80 (616)
|++++++ ++|+..-++...+. ++.+|||+||++|.+||+|+|..+|++||||+|.|||+|+|++|.++||++|||+
T Consensus 1 M~~~k~~--~~~~~~~~~~~~~~--~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvf 76 (673)
T KOG1461|consen 1 MAKKKKR--PAALGETGKEENFR--EHRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVF 76 (673)
T ss_pred CCcccCc--ccccccCccccccc--ccceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEE
Confidence 7777766 33333333333333 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccC
Q 007143 81 CCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKD 160 (616)
Q Consensus 81 ~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d 160 (616)
|+.|+.||.+|+++++|.....+.+..|...+++++|||||+++++.++.+||+|++||+++|++|.++|++||+||+.|
T Consensus 77 c~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~D 156 (673)
T KOG1461|consen 77 CSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKED 156 (673)
T ss_pred ecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHHHHHHhcceeecceEEEeCCeeecCchHHHHHHHHHHhhhC
Confidence 99999999999999999887667788888888999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEee
Q 007143 161 NNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240 (616)
Q Consensus 161 ~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIc 240 (616)
|+++|||++++.+ +|.+++++++++|+.|+||+||++.. ...+.+.+++++|..++++.+|+||.||+|+||
T Consensus 157 k~~iMTmv~k~~s-------t~~~~~~~~~avd~~T~~ll~yq~~~-~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIc 228 (673)
T KOG1461|consen 157 KDAIMTMVFKESS-------TRETTEQVVIAVDSRTSRLLHYQKCV-REKHDIQLDLSLFDSNDEVEVRNDLLDCQIDIC 228 (673)
T ss_pred ccceEEEEEeccc-------cccCCcceEEEEcCCcceEEeehhhc-ccccccccCHHHhcCCCcEEEEccCCCceeeEe
Confidence 9999999999864 46667888999999999999999732 235679999999999999999999999999999
Q ss_pred CHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEcccc-chhhccChhhHHHHhhhhhccccccccCCCcccCCC
Q 007143 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR 319 (616)
Q Consensus 241 sp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~ 319 (616)
||+|++||+|||||| +|.||++|+|..+++|++||+|.+++. |++||.+|++|+.+++|+|+||+||++|+.++.+++
T Consensus 229 S~~V~sLF~dNFDyq-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q 307 (673)
T KOG1461|consen 229 SPEVLSLFTDNFDYQ-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQ 307 (673)
T ss_pred cHhHHHHhhhcccce-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 999999999999999 799999999999999999999999865 999999999999999999999999999999999999
Q ss_pred cceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEE
Q 007143 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIV 399 (616)
Q Consensus 320 ~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siI 399 (616)
.+.+.|.++|.++.+.++++|.++.+++||.+|.||.+++|.||+||.||.||.||+|.+|+||.+|+||+||+|.+|+|
T Consensus 308 ~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii 387 (673)
T KOG1461|consen 308 TFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAII 387 (673)
T ss_pred eeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCCCCCChhhhhhhcCCCCcccccccccCCCCCccccccc
Q 007143 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPTVHDSDEELEYADNSSGTVEFSCTADQSNGEMTSESSE 479 (616)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (616)
|++|.|+++|++.+||+||.+|+||++.+++.+++|.+ +..+++|||. ..+
T Consensus 388 ~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l~~ns~~~~---p~~eesdee~--------~~~------------------ 438 (673)
T KOG1461|consen 388 CDDVKIGEGAILKPGSVLGFGVVVGRNFVLPKNSKVRQ---PTTEESDEEG--------LDD------------------ 438 (673)
T ss_pred ecCcEeCCCcccCCCcEEeeeeEeCCCccccccccccC---Ccccccchhh--------ccc------------------
Confidence 99999999999999999999999999999999999933 4455554430 000
Q ss_pred CCCCCcCCCCCeeEeeccCCCchhhhccCCCCCCCCcccccccccchhhhhhhcccccccCCCccccCCCCCCCCCCC-C
Q 007143 480 AHKPKLGTGGVGYIWSICEGGQEEEWRHSVAPIPEDKLTELSEAMDDDQELVTQDRTALSTSGELISDSNASEGDDNE-D 558 (616)
Q Consensus 480 ~~~~~vg~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~~-~ 558 (616)
....-+|+.|.||+|..+ +.++|+|.....+..+.++...+...++ .++ .|.++++++.+ +
T Consensus 439 ~~l~siG~~G~gyi~~~~-~~~dee~~~~~~~~~~~k~n~~~~~Dd~-------~se----------~s~~~~edd~~~~ 500 (673)
T KOG1461|consen 439 VKLKSIGPDGAGYIWETE-DADDEEWKPLVPPSPNDKTNEAIEDDDS-------ESE----------SSVSEEEDDASTD 500 (673)
T ss_pred hheeeccCCcceeeeccc-CcccccccccccCCcccccccccccccc-------hhh----------ccccccccccccc
Confidence 001228999999999763 3345555555444444333321111111 100 11112222212 2
Q ss_pred CCCchhhHHHHHHHHHHHHHHcCCCCCcEEEeecccccccCCChHHhhcccCc
Q 007143 559 SKDDSVYFEKEVEATFLRAVEENVKVDHVILEVNSLRGSLDFTCSLLMRLEGF 611 (616)
Q Consensus 559 ~~~d~~~F~~e~~~~l~r~~~~~~~~d~~~lEin~lr~a~n~~~~~v~~~~~~ 611 (616)
..+|+..|++||.+||+||+|||+++|+++|||||||||||++++||+++.-+
T Consensus 501 in~d~~~F~~Ev~~s~~ra~Een~~~D~~vlEINslRla~N~s~~ev~~av~~ 553 (673)
T KOG1461|consen 501 INDDTKDFEKEVLGSLQRAFEENSDMDNLVLEINSLRLAYNVSLKEVAGAVFM 553 (673)
T ss_pred cCchhHHHHHHHHHHHHHHHHhccchHHHHHHHhhhHHhhcCCHHHHHHHHHH
Confidence 33578899999999999999999999999999999999999999999987643
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=4.8e-48 Score=422.60 Aligned_cols=355 Identities=20% Similarity=0.287 Sum_probs=275.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC-----
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ----- 100 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~----- 100 (616)
+.|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|+++|+++|+|+++++.+++++|+....|+..
T Consensus 2 ~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~~ 81 (436)
T PLN02241 2 KSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNFG 81 (436)
T ss_pred CceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCcccC
Confidence 459999999999999999999999999999996 99999999999999999999999999999999986432210
Q ss_pred -CCcEEEEEeCC-----CccCHHHHHHHHHhc--cc---ccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEE
Q 007143 101 -PNFTVKTIESH-----NIISAGDALRLIYEQ--NV---IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMII 169 (616)
Q Consensus 101 -~~~~i~~i~~~-----~~~~~gdalr~~~~~--~~---i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~ 169 (616)
.++.+.+..+. ..+|+|+|++.+... .. +.++|||++||++++.+|.+++++|+++ ++.||+++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~-----~a~~ti~~ 156 (436)
T PLN02241 82 DGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRES-----GADITIAC 156 (436)
T ss_pred CCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHc-----CCCEEEEE
Confidence 12333322221 357999999865311 11 2467999999999999999999999885 48899999
Q ss_pred ecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehHhhhcCC-ceEEEeccccceeEeeCHhHHh-
Q 007143 170 KKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVLS- 246 (616)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~-~~~~~l~~~l~~~~~-~~~ir~dl~d~gIyIcsp~vl~- 246 (616)
++.... +..+++ ++.+|. +++|++|.|||..+ ...+.++.++|..++ +++.+.+++++|||+|+|++|.
T Consensus 157 ~~v~~~---~~~~yg----vv~~d~-~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ 228 (436)
T PLN02241 157 LPVDES---RASDFG----LMKIDD-TGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLK 228 (436)
T ss_pred Eecchh---hcCcce----EEEECC-CCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHH
Confidence 887533 345677 788864 78999999998633 345778888887554 3555678999999999999994
Q ss_pred hhhcCCChhhHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeee
Q 007143 247 LFTDNFDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLER 325 (616)
Q Consensus 247 lf~dnfd~q~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~ 325 (616)
+|.+.+++ +.+|..+++...+ .|.++++|.++ +||.+|+++++|.+++++++... | ...+....
T Consensus 229 ll~~~~~~---~~~~~~dil~~l~~~g~~v~~~~~~-gyw~dIg~~~~y~~a~~~~l~~~--~---~~~~~~~~------ 293 (436)
T PLN02241 229 LLRWRFPT---ANDFGSEIIPGAIKEGYNVQAYLFD-GYWEDIGTIKSFYEANLALTKQP--P---KFSFYDPD------ 293 (436)
T ss_pred HHHhhccc---ccchhHHHHHHHhhcCCeEEEEeeC-CEEEECCCHHHHHHHHHHHhcCC--c---hhhccCCC------
Confidence 67766553 2366667776654 45799999997 79999999999999999999842 1 11111110
Q ss_pred cceEEc----CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCC----------------
Q 007143 326 RGMYRA----LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDN---------------- 385 (616)
Q Consensus 326 ~~i~~~----~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~---------------- 385 (616)
..+|.+ +.+.+ .++.|.+ ++|+++|.|+ ++.|++|+||++|.||++|+|.+++++..
T Consensus 294 ~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~ 370 (436)
T PLN02241 294 APIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEG 370 (436)
T ss_pred CcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccC
Confidence 111111 22333 3566644 8999999999 99999999999999999999999998773
Q ss_pred ---CEECCCcEEeceEECCCcEECCCCEEC
Q 007143 386 ---VIIEDGCELRHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 386 ---v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (616)
++||++|+|.+++|+++|+||+++.|.
T Consensus 371 ~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~ 400 (436)
T PLN02241 371 KVPIGIGENTKIRNAIIDKNARIGKNVVII 400 (436)
T ss_pred CcceEECCCCEEcceEecCCCEECCCcEEe
Confidence 389999999999999999999999997
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-47 Score=405.48 Aligned_cols=319 Identities=24% Similarity=0.394 Sum_probs=232.1
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.|+|||||+|+||||+|||..+||||+||+|+|||+|+|++|+++|+++|+|.++++.++|++|+.+..+ .+++|.+
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~---~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEG---LGVRITY 77 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccc---cCCceEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999998522 2578999
Q ss_pred EeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~ 186 (616)
+.+.+++|||++|+.+ ++++. ++|++++||++++.+|..++++|+++ .+.+|++..... ...++|
T Consensus 78 ~~e~~~lGTag~l~~a--~~~l~~~~f~v~~GDv~~~~dl~~l~~~~~~~-----~~~~~~~~~~~~-----~~~~~G-- 143 (358)
T COG1208 78 VVEKEPLGTAGALKNA--LDLLGGDDFLVLNGDVLTDLDLSELLEFHKKK-----GALATIALTRVL-----DPSEFG-- 143 (358)
T ss_pred EecCCcCccHHHHHHH--HHhcCCCcEEEEECCeeeccCHHHHHHHHHhc-----cCccEEEEEecC-----CCCcCc--
Confidence 9999999999999965 45565 67999999999999999999999986 377787777654 235677
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc--CCChhhHHHHhhhh
Q 007143 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD--NFDYQHLRRHFVKG 264 (616)
Q Consensus 187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d--nfd~q~lr~dfv~~ 264 (616)
++..+..++++..|.+||.. .. ..++++++|+|+|+|+++.++.. .+++. .++++.
T Consensus 144 --vv~~~~~~~~v~~f~ekp~~-~~----------------~~~~~in~Giyi~~~~v~~~i~~~~~~~~~---~~~~~~ 201 (358)
T COG1208 144 --VVETDDGDGRVVEFREKPGP-EE----------------PPSNLINAGIYIFDPEVFDYIEKGERFDFE---EELLPA 201 (358)
T ss_pred --eEEecCCCceEEEEEecCCC-CC----------------CCCceEEeEEEEECHHHhhhcccCCcccch---hhHHHH
Confidence 77777445799999999842 10 13578999999999999996653 23332 245555
Q ss_pred hhhccccCceEEEEEccccchhhccChhhHHHHhhhhhcccc-ccccCCCcc-cCCCcceeeecceEEcCCcEECCCCEE
Q 007143 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWT-YPYVPDVKF-CGNRATKLERRGMYRALEIEQSRSAQV 342 (616)
Q Consensus 265 ~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~-~p~~p~~~~-~~~~~~~~~~~~i~~~~~v~i~~~~~I 342 (616)
++. .+..++++... +||.+|+++++|..+++.+++++. ++.-+.... ..... ....+++|+++++.|++++.|
T Consensus 202 l~~---~~~~v~~~~~~-g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i 276 (358)
T COG1208 202 LAA---KGEDVYGYVFE-GYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALI 276 (358)
T ss_pred HHh---CCCcEEEEEeC-CeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEE
Confidence 543 23359999997 799999999999999999987432 221111000 00111 334445555555555555555
Q ss_pred CCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECC
Q 007143 343 GSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIED 390 (616)
Q Consensus 343 ~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~ 390 (616)
+++++||++|.|+.++.|.+|+|.++|.||+++.|.+|+|+.+|+||+
T Consensus 277 ~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~ 324 (358)
T COG1208 277 GPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGA 324 (358)
T ss_pred CCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECC
Confidence 555555555555555555555555555555555555555555555554
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.4e-46 Score=408.25 Aligned_cols=379 Identities=20% Similarity=0.280 Sum_probs=285.6
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC--CC-c
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ--PN-F 103 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~--~~-~ 103 (616)
.++|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|+++|+++|+|+++++.+++++|+....|... .+ +
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~g~~ 82 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFSGGFV 82 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccCCCEE
Confidence 58999999999999999999999999999999 99999999999999999999999999999999976322211 12 1
Q ss_pred EEEEEeCC----C-ccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCC
Q 007143 104 TVKTIESH----N-IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKP 174 (616)
Q Consensus 104 ~i~~i~~~----~-~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~ 174 (616)
.+....+. . .+|+|+|++.. +.++. ++|||++||++++.++.++++.|++. ++.+||++++...
T Consensus 83 ~i~~~~~~~~~~~~~lGTa~al~~a--~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~~~~ 155 (429)
T PRK02862 83 EVLAAQQTPENPSWFQGTADAVRKY--LWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRET-----GADITLAVLPVDE 155 (429)
T ss_pred EEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHc-----CCCEEEEEEecCh
Confidence 22222111 1 27999999965 33443 45999999999999999999999775 4778888876543
Q ss_pred CCCCcccccCCCceEEEEeCCCCeEEEeeecCCCC-CcceEeehHhhhcCC-ceEEEeccccceeEeeCHhHHh-hhhcC
Q 007143 175 SPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHS-KGTICLDKMLLAENP-SISLHNDKQDCYIDICSPEVLS-LFTDN 251 (616)
Q Consensus 175 ~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~-~~~~~l~~~l~~~~~-~~~ir~dl~d~gIyIcsp~vl~-lf~dn 251 (616)
. ...+|| ++.+|+ ++++..|.|||... ...+.++.++|..++ ....+..++++|||+|+|++|. ++...
T Consensus 156 ~---~~~~yG----~i~~d~-~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~ 227 (429)
T PRK02862 156 K---DASGFG----LMKTDD-DGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN 227 (429)
T ss_pred h---hcccce----EEEECC-CCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC
Confidence 2 345677 788874 68999999998632 345677888776554 3444567899999999999995 66654
Q ss_pred CChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEc
Q 007143 252 FDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRA 331 (616)
Q Consensus 252 fd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~ 331 (616)
+.+.+...|+++. .+.+.++++|.++ +||.+++++++|.+++++++.. ..|...+.......+.+ ....
T Consensus 228 ~~~~~~~~dil~~----l~~~~~v~~~~~~-g~w~digt~~~y~~an~~l~~~----~~~~~~~~~~~~~i~~~--~~~~ 296 (429)
T PRK02862 228 PEYTDFGKEIIPE----AIRDYKVQSYLFD-GYWEDIGTIEAFYEANLALTQQ----PNPPFSFYDEKAPIYTR--ARYL 296 (429)
T ss_pred CChhhhHHHHHHH----HhccCcEEEEEeC-CEEEeCCCHHHHHHHHHHHHcC----CCCcccccCCCCceecc--CCCC
Confidence 4333334455544 3467789999986 8999999999999999998732 22322111111111111 1122
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECC-------------------CCEECCCc
Q 007143 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWD-------------------NVIIEDGC 392 (616)
Q Consensus 332 ~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~-------------------~v~Ig~~~ 392 (616)
+.+.+ .++.| .+++||++|.| +++.|++|+||++|+||++|+|.+|+|+. ++.||++|
T Consensus 297 ~~a~~-~~~~~-~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~ 373 (429)
T PRK02862 297 PPSKL-LDATI-TESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGT 373 (429)
T ss_pred CCccc-cccEE-EeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCC
Confidence 22333 25666 36899999999 89999999999999999999999999987 69999999
Q ss_pred EEeceEECCCcEECCCCEEC------------CCCEECCC-cEECCCCEECCCCEE
Q 007143 393 ELRHVIVCDGVIMKAGAVLK------------PGVVLSFK-VVIGERFVVPAHSKV 435 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~------------~g~vIg~~-v~Ig~~~~v~~~~~v 435 (616)
.|.+++|+.+|.||++++|. +|++|++| |+|+.+++|++|++|
T Consensus 374 ~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 374 TIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred EEEEEEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 99999999999999999995 25677777 777777777777653
No 5
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-47 Score=381.75 Aligned_cols=373 Identities=25% Similarity=0.390 Sum_probs=283.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCcEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~i 105 (616)
..|||||+|+|.|+||--++...|||||||+|+|||+|.|.+|.++|+++|+|++.. ....|+..+.+..-......-+
T Consensus 8 ~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~~~~~v 87 (433)
T KOG1462|consen 8 SEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKKRPDYV 87 (433)
T ss_pred HHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccccccEE
Confidence 358999999999999999999999999999999999999999999999999999986 3567777776532211111122
Q ss_pred EEEe-CCCccCHHHHHHHHHhcccccC-CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC-Ccccc
Q 007143 106 KTIE-SHNIISAGDALRLIYEQNVIHG-DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI-THQSR 182 (616)
Q Consensus 106 ~~i~-~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~-~~~~r 182 (616)
.+.. .....|++|+||.+.. .|++ |||+++||.|+++++..+++++|.. |+..+|++. -..+..+. +.+.+
T Consensus 88 ~ip~~~~~d~gtadsLr~Iy~--kikS~DflvlsCD~Vtdv~l~~lvd~FR~~---d~slamli~-~~~s~~~~pgqk~k 161 (433)
T KOG1462|consen 88 EIPTDDNSDFGTADSLRYIYS--KIKSEDFLVLSCDFVTDVPLQPLVDKFRAT---DASLAMLIG-NALSEVPIPGQKGK 161 (433)
T ss_pred EeecccccccCCHHHHhhhhh--hhccCCEEEEecccccCCCcHHHHHHHhcc---ChhHhHHhc-cccccccccCcccc
Confidence 2221 2236799999998764 4776 9999999999999999999999953 455566554 11111111 12223
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhh
Q 007143 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFV 262 (616)
Q Consensus 183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv 262 (616)
-.....++.++++|.|+++.... ...+..+.|...|++.||.+++.++|.|+|||.|+.+++++|.++-.-.+.|.+|+
T Consensus 162 ~k~~~d~igi~e~t~rl~y~~~~-~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~ 240 (433)
T KOG1462|consen 162 KKQARDVIGINEDTERLAYSSDS-ADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFL 240 (433)
T ss_pred cccccceeeeccccceeEEeecC-CcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeeccccc
Confidence 22355689999999997655543 23456789999999999999999999999999999999999997655556677888
Q ss_pred hhhhhccc----------------------c-------CceEEEEEcccc-chhhccChhhHHHHhhhhhccccccccCC
Q 007143 263 KGLLLDDI----------------------M-------GYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPD 312 (616)
Q Consensus 263 ~~~l~~~i----------------------~-------g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~r~~~p~~p~ 312 (616)
+.++.... . .-++|+|.++.+ ...|++|+-.|.++|++-+ ..-+.|+
T Consensus 241 P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~---~~~l~~e 317 (433)
T KOG1462|consen 241 PYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKK---LKKLCSE 317 (433)
T ss_pred chhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHH---HHHhccc
Confidence 77764321 1 257888888654 5679999999999997422 1123444
Q ss_pred CcccCCCcceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143 313 VKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392 (616)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~ 392 (616)
..+..+. ....+.++..+.||++|+|++++.|..|+||.+|.||+.|+|.+|.|++||+||+||
T Consensus 318 ~~~~k~~----------------~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~ 381 (433)
T KOG1462|consen 318 AKFVKNY----------------VKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGV 381 (433)
T ss_pred cccccch----------------hhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCc
Confidence 3322210 011145667888899999999999999999999999999999999999999999999
Q ss_pred EEeceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGER 426 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~ 426 (616)
.|++||||.++.||+++.+. +|.||.+=+|.+.
T Consensus 382 ~IensIIg~gA~Ig~gs~L~-nC~Ig~~yvVeak 414 (433)
T KOG1462|consen 382 NIENSIIGMGAQIGSGSKLK-NCIIGPGYVVEAK 414 (433)
T ss_pred ceecceecccceecCCCeee-eeEecCCcEEccc
Confidence 99999999999999999998 4555555554433
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.3e-44 Score=389.64 Aligned_cols=358 Identities=18% Similarity=0.230 Sum_probs=265.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHh-cCCCCC---C
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLEN-SEWFSQ---P 101 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~-~~~~~~---~ 101 (616)
+.|+|||||||+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+++ .+|... .
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRING 81 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCCCC
Confidence 359999999999999999999999999999999 89999999999999999999999999999999975 345322 1
Q ss_pred CcEEE--EEeCCC---ccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007143 102 NFTVK--TIESHN---IISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (616)
Q Consensus 102 ~~~i~--~i~~~~---~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~ 172 (616)
++.+. ++.+.+ ..|+++|++.. +.++. ++|||++||++++.++.+++++|+++ ++.+|+++...
T Consensus 82 ~~~i~~~~~~~~~~~~~~Gta~al~~a--~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~-----~~~~tl~~~~~ 154 (380)
T PRK05293 82 GVTILPPYSESEGGKWYKGTAHAIYQN--IDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK-----EADVTIAVIEV 154 (380)
T ss_pred CEEEeCCcccCCCCcccCCcHHHHHHH--HHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCCEEEEEEEc
Confidence 23333 333332 37999999854 34443 34999999999999999999999875 35577776554
Q ss_pred CCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcC
Q 007143 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDN 251 (616)
Q Consensus 173 ~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dn 251 (616)
... +..+|| ++.+|. .++|..+.+||..+ ..++.++|+|+++++++. ++.+.
T Consensus 155 ~~~---~~~~yG----~v~~d~-~g~V~~~~eKp~~~-------------------~~~~~~~Giyi~~~~~l~~~l~~~ 207 (380)
T PRK05293 155 PWE---EASRFG----IMNTDE-NMRIVEFEEKPKNP-------------------KSNLASMGIYIFNWKRLKEYLIED 207 (380)
T ss_pred chh---hccccC----EEEECC-CCcEEEEEeCCCCC-------------------CcceeeeEEEEEcHHHHHHHHHHH
Confidence 322 455777 777874 58999999997522 135678999999999885 44321
Q ss_pred CChhhHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEE
Q 007143 252 FDYQHLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYR 330 (616)
Q Consensus 252 fd~q~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~ 330 (616)
........+|..++++..+ .+.++++|..+ +||.+++++++|.+++++++.+-.. ...+... ... .....+
T Consensus 208 ~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l~~~~~----~~~~~~~-~~~--~~~~~~ 279 (380)
T PRK05293 208 EKNPNSSHDFGKNVIPLYLEEGEKLYAYPFK-GYWKDVGTIESLWEANMELLRPENP----LNLFDRN-WRI--YSVNPN 279 (380)
T ss_pred hhcCCchhhhHHHHHHHHhhcCCeEEEEEeC-CEEEeCCCHHHHHHHHHHHcCCCch----hhhcCCC-Cce--ecCCcC
Confidence 1000012345555555444 45789999987 7999999999999999998865311 0011110 000 011123
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007143 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (616)
Q Consensus 331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~ 410 (616)
...+.|++++.| .++.||++|.|+ ..+.+|+||++|.||++|+|.+|+|+++++|+++|+|.+|+|++++.|+.+++
T Consensus 280 ~~~~~i~~~~~i-~~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~ 356 (380)
T PRK05293 280 LPPQYIAENAKV-KNSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVI 356 (380)
T ss_pred CCCCEECCCCEE-ecCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCE
Confidence 344556666666 467788888885 35779999999999999999999999999999999999999999999999999
Q ss_pred ECCC----CEECCCcEECCCCEE
Q 007143 411 LKPG----VVLSFKVVIGERFVV 429 (616)
Q Consensus 411 I~~g----~vIg~~v~Ig~~~~v 429 (616)
|.++ .+||++++|+++++|
T Consensus 357 i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 357 IGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred EcCCCceeEEEeCCCCCCCCcEe
Confidence 9875 556666666665554
No 7
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=4.9e-45 Score=362.99 Aligned_cols=345 Identities=20% Similarity=0.272 Sum_probs=270.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.|+||||.+|+|||++|||...||||+|++|+|||+|.+++|..+|+++|++.+++..+++..|+.+.. ...-+++|.
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y-~~~lgVei~ 86 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY-GKELGVEIL 86 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh-hhccceEEE
Confidence 5699999999999999999999999999999999999999999999999999999998887776665532 112245666
Q ss_pred EEeCCCccC---HHHHHHHHHhcccccC--CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143 107 TIESHNIIS---AGDALRLIYEQNVIHG--DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (616)
Q Consensus 107 ~i~~~~~~~---~gdalr~~~~~~~i~~--dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~ 181 (616)
+-.+.++++ +.++.|... ...+ +|++++||+++.+++.+|+++|++++ +..|+++.+.. .++
T Consensus 87 ~s~eteplgtaGpl~laR~~L---~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~g-----ae~TI~~t~vd-----epS 153 (371)
T KOG1322|consen 87 ASTETEPLGTAGPLALARDFL---WVFEDAPFFVLNSDVICRMPYKEMVQFHRAHG-----AEITIVVTKVD-----EPS 153 (371)
T ss_pred EEeccCCCcccchHHHHHHHh---hhcCCCcEEEecCCeeecCCHHHHHHHHHhcC-----CceEEEEEecc-----Ccc
Confidence 655655654 445555332 2223 69999999999999999999999974 89999998876 467
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHh
Q 007143 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHF 261 (616)
Q Consensus 182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~df 261 (616)
+|| ++.+|..+++|.+|.|||.. +-++.+|.|||+++|+||..+. -+. .-|
T Consensus 154 kyG----vv~~d~~~grV~~F~EKPkd-------------------~vsnkinaGiYi~~~~vL~ri~-~~p-----tSi 204 (371)
T KOG1322|consen 154 KYG----VVVIDEDTGRVIRFVEKPKD-------------------LVSNKINAGIYILNPEVLDRIL-LRP-----TSI 204 (371)
T ss_pred ccc----eEEEecCCCceeEehhCchh-------------------hhhccccceEEEECHHHHhHhh-hcc-----cch
Confidence 999 99999889999999999862 1245667999999999998665 111 124
Q ss_pred hhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCCE
Q 007143 262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQ 341 (616)
Q Consensus 262 v~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~ 341 (616)
-+.+++....++++++|.++ +||.||+++++|+.+..-+++.. |.. ....+.+++.
T Consensus 205 ekEifP~~a~~~~l~a~~l~-gfWmDIGqpkdf~~g~~~Yl~s~-----~~~------------------t~~r~~p~~~ 260 (371)
T KOG1322|consen 205 EKEIFPAMAEEHQLYAFDLP-GFWMDIGQPKDFLTGFSFYLRSL-----PKY------------------TSPRLLPGSK 260 (371)
T ss_pred hhhhhhhhhhcCceEEEecC-chhhhcCCHHHHHHHHHHHHhhC-----ccc------------------CCccccCCcc
Confidence 45555656688999999998 99999999999999966666532 110 0011222344
Q ss_pred ECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCC
Q 007143 342 VGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420 (616)
Q Consensus 342 I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~ 420 (616)
|.+++.+.+-..+|.+|.|+ +++||.+|+|+.+++|.+|.++.++.++.++.|..+++|.++.||.+++|...|+||++
T Consensus 261 i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~n 340 (371)
T KOG1322|consen 261 IVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKN 340 (371)
T ss_pred ccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccc
Confidence 44555555555566666665 37899999999999999999999999999999999999999999999999999999999
Q ss_pred cEECCCCEECCCCEEccc
Q 007143 421 VVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 421 v~Ig~~~~v~~~~~v~~~ 438 (616)
|+|.+.-.+..+....+.
T Consensus 341 V~V~d~~~vn~g~~l~~k 358 (371)
T KOG1322|consen 341 VIVADEDYVNEGSGLPIK 358 (371)
T ss_pred eEEecccccccceeEEec
Confidence 999887777776555443
No 8
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=6.3e-43 Score=379.34 Aligned_cols=345 Identities=17% Similarity=0.241 Sum_probs=253.4
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i 105 (616)
..|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+.. .|... ++.+
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~~~-~~~~ 81 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQ-TWRLS-GLLG 81 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHh-CcCcc-ccCC
Confidence 468999999999999999999999999999998 99999999999999999999999999999999974 46322 1222
Q ss_pred EEEe---CC------CccCHHHHHHHHHhcccccC---C-EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007143 106 KTIE---SH------NIISAGDALRLIYEQNVIHG---D-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (616)
Q Consensus 106 ~~i~---~~------~~~~~gdalr~~~~~~~i~~---d-fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~ 172 (616)
.++. .. ..+|+|+|++.. +.++.+ + |||++||++++.+|.+++++|++. ++.+|+++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a--~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~-----~~~~ti~~~~~ 154 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQS--LNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIES-----GAGVTVAAIRV 154 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHH--HHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhc-----CCcEEEEEEec
Confidence 2221 11 148999999854 444532 3 899999999999999999999875 46788887754
Q ss_pred CCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcC
Q 007143 173 KPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN 251 (616)
Q Consensus 173 ~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dn 251 (616)
... ...++| ++.+|+ .++|..|.+||...... +. .-.+.++.+|||++++++| .++...
T Consensus 155 ~~~---~~~~~G----vv~~d~-~g~v~~~~eKp~~~~~~-------~~-----~~~~~~~~~Giyi~~~~~l~~~l~~~ 214 (407)
T PRK00844 155 PRE---EASAFG----VIEVDP-DGRIRGFLEKPADPPGL-------PD-----DPDEALASMGNYVFTTDALVDALRRD 214 (407)
T ss_pred chH---HcccCC----EEEECC-CCCEEEEEECCCCcccc-------cC-----CCCCcEEEeEEEEEeHHHHHHHHHHh
Confidence 322 445777 888885 68999999998632110 00 0124678999999999996 656531
Q ss_pred C----ChhhHHHHhhhhhhhccccCceEEEEEcc-----------ccchhhccChhhHHHHhhhhhccccccccCCCccc
Q 007143 252 F----DYQHLRRHFVKGLLLDDIMGYKIFTHEIH-----------SSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFC 316 (616)
Q Consensus 252 f----d~q~lr~dfv~~~l~~~i~g~~I~~~~~~-----------~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~ 316 (616)
. ...++..|+++.++ ...++++|... .+||.+|+++++|.++++++|.+... . ..+.
T Consensus 215 ~~~~~~~~~~~~dii~~l~----~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~-~---~~~~ 286 (407)
T PRK00844 215 AADEDSSHDMGGDIIPRLV----ERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV-F---NLYN 286 (407)
T ss_pred hcCCcccccchhhHHHHHh----ccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCc-c---ccCC
Confidence 1 11112234554444 34578888652 48999999999999999999975211 0 0010
Q ss_pred CCC-cce---eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143 317 GNR-ATK---LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392 (616)
Q Consensus 317 ~~~-~~~---~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~ 392 (616)
... .+. ...+..|++..+. ..+.++++||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|+|+++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~ 361 (407)
T PRK00844 287 REWPIYTSSPNLPPAKFVDGGGR----VGSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGA 361 (407)
T ss_pred CCCcccccCCCCCCceEecCCCc----cceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCC
Confidence 000 000 1112233322211 1234678999999998 899999999999999999999999999999999999
Q ss_pred EEeceEECCCcEECCCCEECC
Q 007143 393 ELRHVIVCDGVIMKAGAVLKP 413 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~ 413 (616)
+|.+|+|++++.|+++++|+.
T Consensus 362 ~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 362 VVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred EEEeeEECCCCEECCCCEECC
Confidence 999999999999999888875
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2e-43 Score=378.99 Aligned_cols=338 Identities=20% Similarity=0.346 Sum_probs=221.0
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHH-HHHHHHHhc-CCCCCC---
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSK-QVIDYLENS-EWFSQP--- 101 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~-~i~~~l~~~-~~~~~~--- 101 (616)
.|+|||||+|+|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+ +|++|+.+. .|....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 58999999999999999999999999999999 999999999999999999999999876 999999763 453220
Q ss_pred CcEEEEEeCCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143 102 NFTVKTIESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (616)
Q Consensus 102 ~~~i~~i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~ 177 (616)
+..+.+......+|+|++.....++.++. ++|||++||++++++|.+++++|+++ ++.+|+++.+....
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~-----~a~~tl~~~~v~~~-- 154 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEET-----GKDITVVYKKVKPA-- 154 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHc-----CCCEEEEEEecCHH--
Confidence 11122233334455555433333445552 45999999999999999999999875 47899998775421
Q ss_pred CcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhh
Q 007143 178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQH 256 (616)
Q Consensus 178 ~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~ 256 (616)
...+++ .++.++. ++++..+.+++.+.. ..++.+|||+++|+++ .++.+.+...
T Consensus 155 -~~~~~g---~vv~~~~-~g~v~~~~~~~~~~~-------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~- 209 (369)
T TIGR02092 155 -DASEYD---TILRFDE-SGKVKSIGQNLNPEE-------------------EENISLDIYIVSTDLLIELLYECIQRG- 209 (369)
T ss_pred -HccccC---cEEEEcC-CCCEEeccccCCCCC-------------------cceeeeeEEEEEHHHHHHHHHHHhhcC-
Confidence 233554 1455653 467776644322110 1235689999999976 4554322111
Q ss_pred HHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceE----EcC
Q 007143 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMY----RAL 332 (616)
Q Consensus 257 lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~----~~~ 332 (616)
..+++.++++..+.+.++++|..+ +||.+|+++++|.+++++++++|.++... ... ...++ ..+
T Consensus 210 -~~~~~~d~i~~~~~~~~v~~~~~~-g~w~dIgt~~~l~~a~~~~l~~~~~~~~~----~~~------~~~~~~~~~~~~ 277 (369)
T TIGR02092 210 -KLTSLEELIRENLKELNINAYEYT-GYLANINSVKSYYKANMDLLDPQNFQSLF----YSS------QGPIYTKVKDEP 277 (369)
T ss_pred -ccccHHHHHHHHhccCcEEEEecC-CceeEcCCHHHHHHHHHHHhCCcchhhhc----CCC------CCceeeccCCCC
Confidence 112333444443445689999887 89999999999999999999998764211 000 01111 112
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (616)
.+.|++++.| ++++||++|.|+ +.|.+|+||++|.||++|.|.+|+|++++.|+.+|++.+|+||.+++|+++++|.
T Consensus 278 p~~i~~~~~i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~ 354 (369)
T TIGR02092 278 PTYYAENSKV-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIA 354 (369)
T ss_pred CcEEcCCCEE-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeC
Confidence 2334444444 445555555554 2355555666666666666655556555555555555555555555555555553
No 10
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-44 Score=348.15 Aligned_cols=332 Identities=19% Similarity=0.328 Sum_probs=272.2
Q ss_pred CCeEEEEEeCC--CCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCc
Q 007143 27 QPLQAILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNF 103 (616)
Q Consensus 27 ~~l~aVILA~g--~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~ 103 (616)
+.++||||.+| +||||+||+.+.||||+||+|+|||+|-|+.+++. |+.+|+++.-+..+.+++|+...... -++
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e--~~~ 78 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQE--FKV 78 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhh--ccc
Confidence 35799999998 68999999999999999999999999999999996 99999999888888888888763211 135
Q ss_pred EEEEEeCCCccCHHHHHHHHHhcccccC---CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143 104 TVKTIESHNIISAGDALRLIYEQNVIHG---DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (616)
Q Consensus 104 ~i~~i~~~~~~~~gdalr~~~~~~~i~~---dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~ 180 (616)
.|.++.+..+.|+|+.|.....+ ++.+ .|+|+++|+-++++|.+|++.|+.. +..+||+..++++. ..
T Consensus 79 pvrYL~E~~plGtaGgLyhFrdq-Il~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~-----g~~~tll~tkvs~e---~a 149 (407)
T KOG1460|consen 79 PVRYLREDNPLGTAGGLYHFRDQ-ILAGSPSAVFVLNADVCCSFPLQDMLEAHRRY-----GGIGTLLVTKVSRE---QA 149 (407)
T ss_pred chhhhccCCCCCcccceeehhhH-HhcCCCceEEEEecceecCCcHHHHHHHHhhc-----CCceEEEEEEecHh---Hh
Confidence 68899999999999998865433 2332 3999999999999999999999765 58999999998765 56
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCC-------
Q 007143 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD------- 253 (616)
Q Consensus 181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd------- 253 (616)
..|| .++-|+.|++|+||.+||.. +-+|.++||||+++|++|..+.+-+.
T Consensus 150 snfG----~lV~dP~t~evlHYveKPsT-------------------fvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~ 206 (407)
T KOG1460|consen 150 SNFG----CLVEDPSTGEVLHYVEKPST-------------------FVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLE 206 (407)
T ss_pred hccC----eeeecCCcCceEEeecCcch-------------------hhhcccceeEEEecHHHHHHHHHHHHHHHhhhh
Confidence 6788 78889999999999999862 24789999999999999987765321
Q ss_pred -------hhhHHHHhh---hhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccc--cccccCCCcccCCCcc
Q 007143 254 -------YQHLRRHFV---KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW--TYPYVPDVKFCGNRAT 321 (616)
Q Consensus 254 -------~q~lr~dfv---~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~--~~p~~p~~~~~~~~~~ 321 (616)
++....||+ .++|......+++|+|..+ ++|..+.+..+-..+++-+|+++ ++|- .+..+...-
T Consensus 207 ~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~y~t~-~fW~QiKtagsal~as~lYLs~yk~t~p~---~Lak~pgt~ 282 (407)
T KOG1460|consen 207 VEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYAYETT-DFWSQIKTAGSALYASRLYLSQYKRTHPA---RLAKGPGTQ 282 (407)
T ss_pred hhhcccccCCCccceEEeechhhhhhcCCCceEEEecc-cHHHHhccccceeehhhhHHHHHhhcCch---hhcCCCCCC
Confidence 111122333 3444445566899999987 89999999999999999999854 4432 211121122
Q ss_pred eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec
Q 007143 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH 396 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~ 396 (616)
....+++|++++++++++++||+|+.||.+++||+|+.|+.|+|-++|.|.+|+++-+|+|+-++.||..++++.
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEG 357 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecc
Confidence 567889999999999999999999999999999999999999999999999999999999999999999999864
No 11
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=2.1e-42 Score=376.71 Aligned_cols=350 Identities=17% Similarity=0.230 Sum_probs=256.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCee-hHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC---CC
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVP-MINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ---PN 102 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~P-lI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~---~~ 102 (616)
+.++|||||+|+||||+|||..+||||+||+|+| ||+|+|++|.++|+++|+|+++++.+++.+|+.+ .|... .+
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~-~~~~~~~~~~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQR-GWSFFREELG 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHh-hhcccccCCC
Confidence 4589999999999999999999999999999997 9999999999999999999999999999999975 35311 01
Q ss_pred cEEEEEe-------CCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEec
Q 007143 103 FTVKTIE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKK 171 (616)
Q Consensus 103 ~~i~~i~-------~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~ 171 (616)
..+.++. ++..+|+|+|++.. +.++. ++|||++||++++.+|.+++++|+++ ++.+|+++.+
T Consensus 93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a--~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~-----~~~~tl~~~~ 165 (425)
T PRK00725 93 EFVDLLPAQQRVDEENWYRGTADAVYQN--LDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVES-----GADCTVACLE 165 (425)
T ss_pred CeEEEeCCcccCCCCccccCcHHHHHHH--HHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHc-----CCCEEEEEEe
Confidence 1222221 12247999999864 34453 34999999999999999999999875 4677888766
Q ss_pred CCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhc
Q 007143 172 SKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTD 250 (616)
Q Consensus 172 ~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~d 250 (616)
.... ...+|| ++.+|. .++|..|.|||..+.. + ... -.+.++++|||+|++++| .++.+
T Consensus 166 ~~~~---~~~~yG----~v~~d~-~~~V~~~~EKp~~~~~---~-----~~~----~~~~l~n~GIYi~~~~~L~~~L~~ 225 (425)
T PRK00725 166 VPRE---EASAFG----VMAVDE-NDRITAFVEKPANPPA---M-----PGD----PDKSLASMGIYVFNADYLYELLEE 225 (425)
T ss_pred cchh---hcccce----EEEECC-CCCEEEEEECCCCccc---c-----ccC----ccceEEEeeEEEEeHHHHHHHHHH
Confidence 5322 455777 888885 5899999999853211 0 000 114678999999999987 45542
Q ss_pred -CCChhhHHHHhhhhhhhccccCceEEEEEccc----------cchhhccChhhHHHHhhhhhccccccccCCCcccCC-
Q 007143 251 -NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHS----------SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGN- 318 (616)
Q Consensus 251 -nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~----------~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~- 318 (616)
.++.+. ..+|..++++..+...++++|.++. +||.+|+++++|.+++++++... |...++..
T Consensus 226 ~~~~~~~-~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~-----~~~~~~~~~ 299 (425)
T PRK00725 226 DAEDPNS-SHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVT-----PELDLYDRN 299 (425)
T ss_pred hhcCCCc-cchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCC-----chhhccCCC
Confidence 111111 1244455555545556899998853 69999999999999999998743 11111111
Q ss_pred -Ccce---eeecceEEc--CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc
Q 007143 319 -RATK---LERRGMYRA--LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC 392 (616)
Q Consensus 319 -~~~~---~~~~~i~~~--~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~ 392 (616)
..++ ...+..|+. .++ .+.+ .+++||++|.| .+|.|++|+||++|.||++|+|.+|+||++|.||++|
T Consensus 300 ~~i~t~~~~~~~~~~~~~~~~~----~~~~-~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~ 373 (425)
T PRK00725 300 WPIWTYQEQLPPAKFVFDRSGR----RGMA-INSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSC 373 (425)
T ss_pred CccccCCCCCCCCeEeccCCCC----cceE-EeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCC
Confidence 0000 111122221 111 1222 47899999999 7899999999999999999999999999999999999
Q ss_pred EEeceEECCCcEECCCCEECCCCE
Q 007143 393 ELRHVIVCDGVIMKAGAVLKPGVV 416 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~v 416 (616)
+|.+|+|+++|.|+++++|+.++.
T Consensus 374 ~i~~~ii~~~~~i~~~~~i~~~~~ 397 (425)
T PRK00725 374 RLRRCVIDRGCVIPEGMVIGEDPE 397 (425)
T ss_pred EEeeEEECCCCEECCCCEECCCCC
Confidence 999999999999998888876654
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.9e-40 Score=352.40 Aligned_cols=344 Identities=17% Similarity=0.242 Sum_probs=253.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHh-cCCCCCCCcEEEE
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVKT 107 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~-~~~~~~~~~~i~~ 107 (616)
+|||||+|.|+||+|+|..+||+|+|++|+|||+|+|+.|.++|+++|+|++++ +.+++.+|+.+ ..| ++++.+
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~~~~----~~~~~~ 76 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEGERF----GAKITY 76 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhccccc----CceEEE
Confidence 589999999999999999999999999999999999999999999999999999 89999999976 334 456777
Q ss_pred EeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~ 186 (616)
+.+....|++++++.. +.++. ++||+++||++++.++.+++++|+++ ++.+|+++.+.. +..+++
T Consensus 77 ~~~~~~~G~~~al~~a--~~~l~~~~~li~~gD~~~~~~l~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g-- 142 (353)
T TIGR01208 77 IVQGEPLGLAHAVYTA--RDFLGDDDFVVYLGDNLIQDGISRFVKSFEEK-----DYDALILLTKVR-----DPTAFG-- 142 (353)
T ss_pred EECCCCCCHHHHHHHH--HHhcCCCCEEEEECCeecCccHHHHHHHHHhc-----CCCcEEEEEECC-----ChhhCe--
Confidence 7777788999999964 44454 46999999999999999999999875 367777776643 234566
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhh
Q 007143 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLL 266 (616)
Q Consensus 187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l 266 (616)
++.++ +.++|..+.++|... .+++..+|||++++.+++++.+-..... ...++.+++
T Consensus 143 --~~~~~-~~~~v~~~~ekp~~~-------------------~~~~~~~Giy~~~~~l~~~l~~~~~~~~-~e~~l~d~l 199 (353)
T TIGR01208 143 --VAVLE-DGKRILKLVEKPKEP-------------------PSNLAVVGLYMFRPLIFEAIKNIKPSWR-GELEITDAI 199 (353)
T ss_pred --EEEEc-CCCcEEEEEECCCCC-------------------CccceEEEEEEECHHHHHHHHhcCCCCC-CcEEHHHHH
Confidence 56665 457899999987522 1356789999999999888754221000 011233344
Q ss_pred hccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCCEECCC
Q 007143 267 LDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSF 345 (616)
Q Consensus 267 ~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~ 345 (616)
+..+ .|.+|++|.++ +||.+|+++++|.++++.++.+....+.+ . .......+++++++++.| .++.|.++
T Consensus 200 ~~l~~~g~~v~~~~~~-g~w~digt~~dl~~a~~~ll~~~~~~~~~----i--~~~~~i~~~~~i~~~~~i-~~~~i~~~ 271 (353)
T TIGR01208 200 QWLIEKGYKVGGSKVT-GWWKDTGKPEDLLDANRLILDEVEREVQG----V--DDESKIRGRVVVGEGAKI-VNSVIRGP 271 (353)
T ss_pred HHHHHcCCeEEEEEeC-cEEEeCCCHHHHHHHHHHHHhhcccccCC----c--CCCCEEcCCEEECCCCEE-eCCEEECC
Confidence 3333 46789999997 89999999999999999999853211110 0 011233456777777777 56666666
Q ss_pred cEECCCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCC-cEEeceEECCCcEECCCCEECC--CCEECCCc
Q 007143 346 TVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG-CELRHVIVCDGVIMKAGAVLKP--GVVLSFKV 421 (616)
Q Consensus 346 ~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~-~~I~~siIg~~v~Ig~~~~I~~--g~vIg~~v 421 (616)
+.||++|.|+ ++.| .+|+||++|.|+ +|.|.+|+|+++++|+.+ +++.+++|++++.|+.++.|.. +.++|+.+
T Consensus 272 ~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~~ii~~~~~i~~~~~~~~~~~~~~g~~~ 349 (353)
T TIGR01208 272 AVIGEDCIIE-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVDSVIGKKVRIKGNRRRPGDLRLTIGDYS 349 (353)
T ss_pred cEECCCCEEc-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeecCEEcCCCEECCCcccccccceEEcCCc
Confidence 7777777776 3344 366677777776 566678888888888777 4777888888888777777763 34555555
Q ss_pred EEC
Q 007143 422 VIG 424 (616)
Q Consensus 422 ~Ig 424 (616)
+|+
T Consensus 350 ~~~ 352 (353)
T TIGR01208 350 QVE 352 (353)
T ss_pred eec
Confidence 553
No 13
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.2e-41 Score=346.00 Aligned_cols=342 Identities=21% Similarity=0.318 Sum_probs=268.7
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCC-CCcE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ-PNFT 104 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~-~~~~ 104 (616)
.+-|+|||+|.|+|+.|||..++||-+|++| ..||+++|.++..+|+.+|+|++.+....+.+||... .|... .+=.
T Consensus 5 ~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~~~ 84 (393)
T COG0448 5 NVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKNGG 84 (393)
T ss_pred ceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCccccccccCc
Confidence 4679999999999999999999999999999 7999999999999999999999999999999999885 45322 1112
Q ss_pred EEEEeC-----C--CccCHHHHHHHHHhccccc---CC-EEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCC
Q 007143 105 VKTIES-----H--NIISAGDALRLIYEQNVIH---GD-FVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSK 173 (616)
Q Consensus 105 i~~i~~-----~--~~~~~gdalr~~~~~~~i~---~d-fLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~ 173 (616)
+.++.. . -..|+++|++.- ..++. .+ +|+++||+|+++|++.++++|+++ +|.+|+++++.+
T Consensus 85 v~ilp~~~~~~~~~wy~Gtadai~Qn--l~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~-----gadiTv~~~~Vp 157 (393)
T COG0448 85 VFILPAQQREGGERWYEGTADAIYQN--LLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIES-----GADVTVAVKEVP 157 (393)
T ss_pred EEEeCchhccCCCcceeccHHHHHHh--HHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEEECC
Confidence 333331 1 225889998852 23332 23 999999999999999999999996 599999999987
Q ss_pred CCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCC
Q 007143 174 PSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNF 252 (616)
Q Consensus 174 ~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnf 252 (616)
.. .++++| ++.+|+ +++|..|.|||..... .+.|...||||++.++|. ++.+.-
T Consensus 158 ~~---eas~fG----im~~D~-~~~i~~F~eKp~~~~~-----------------~~~laSMgiYIf~~~~L~~~L~~~~ 212 (393)
T COG0448 158 RE---EASRFG----VMNVDE-NGRIIEFVEKPADGPP-----------------SNSLASMGIYIFNTDLLKELLEEDA 212 (393)
T ss_pred hH---hhhhcC----ceEECC-CCCEEeeeeccCcCCc-----------------ccceeeeeeEEEcHHHHHHHHHHHh
Confidence 66 778898 899995 8999999999974110 123778999999999987 444322
Q ss_pred ChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCC--cceeeecceEE
Q 007143 253 DYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNR--ATKLERRGMYR 330 (616)
Q Consensus 253 d~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~--~~~~~~~~i~~ 330 (616)
.-.....||.++++...+..+++++|.++ +||.+|+|.++|+++|+|+++- .|+.++.... -|+..+ .
T Consensus 213 ~~~~~~~DfgkdiIp~~~~~~~v~AY~f~-gYw~dVgTi~syy~aNmdLl~~-----~~~~~lyd~~w~IyT~~~----~ 282 (393)
T COG0448 213 KDPNSSHDFGKDIIPKLLERGKVYAYEFS-GYWRDVGTIDSYYEANMDLLSP-----QPELNLYDRNWPIYTKNK----N 282 (393)
T ss_pred cccCccccchHHHHHHHHhcCCEEEEecc-chhhhcccHHHHHHhhHHhcCC-----CCcccccCCCCceeecCC----C
Confidence 11122368888888876655669999998 8999999999999999999981 2333222221 111111 1
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007143 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (616)
Q Consensus 331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~ 410 (616)
.+-+.+..++.+ .++.|+.||.|.- .|.+|+|+.+++|+++|+|.+|+|+++|.||.||+|+++||..+|.|++|++
T Consensus 283 ~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~ 359 (393)
T COG0448 283 LPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVV 359 (393)
T ss_pred CCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcE
Confidence 122344444444 6888999999963 8999999999999999999999999999999999999999999999999999
Q ss_pred ECCC
Q 007143 411 LKPG 414 (616)
Q Consensus 411 I~~g 414 (616)
|+..
T Consensus 360 i~~~ 363 (393)
T COG0448 360 IGGD 363 (393)
T ss_pred EcCC
Confidence 9865
No 14
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=5.8e-41 Score=358.84 Aligned_cols=344 Identities=20% Similarity=0.242 Sum_probs=228.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCC--CcEEEE
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQP--NFTVKT 107 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~--~~~i~~ 107 (616)
|||||+|+|+||+|+|..+||||+||+|+ |||+|+|+.|.++|+++|+|+++++.+++.+|+.. .|.... ...+++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~-~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQR-GWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHh-ccCccCccCCCEEE
Confidence 69999999999999999999999999999 89999999999999999999999999999999985 453211 112333
Q ss_pred Ee-------CCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143 108 IE-------SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (616)
Q Consensus 108 i~-------~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~ 176 (616)
+. ++...|++++++... ..+. ++|+|++||++++.+|.++++.|+++ ++.+|+++.+....
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a~--~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~-----~~~~ti~~~~~~~~- 151 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQNL--DLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIES-----GADVTIACIPVPRK- 151 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHHH--HHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHc-----CCCEEEEEEecChH-
Confidence 21 112479999998543 3332 44999999999999999999999764 35667776654211
Q ss_pred CCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcC-CCh
Q 007143 177 ITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDN-FDY 254 (616)
Q Consensus 177 ~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dn-fd~ 254 (616)
...+++ ++.+|. +++|..|.+||..+...... + ...+.++|||+++|+++ .++... .+.
T Consensus 152 --~~~~~g----~v~~d~-~~~v~~~~ekp~~~~~~~~~--------~----~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 212 (361)
T TIGR02091 152 --EASRFG----VMQVDE-DGRIVDFEEKPANPPSIPGM--------P----DFALASMGIYIFDKDVLKELLEEDADDP 212 (361)
T ss_pred --hccccc----EEEECC-CCCEEEEEECCCCccccccc--------c----cccEEeeeEEEEcHHHHHHHHHHHhhcC
Confidence 344666 778874 67899999987422111000 0 12478999999999997 454431 111
Q ss_pred hhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCc
Q 007143 255 QHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEI 334 (616)
Q Consensus 255 q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v 334 (616)
+. ..+|..++++..+..+++++|.++ +||.+|+++++|..++++++.++... ..+... ... .....++.+.+
T Consensus 213 ~~-~~~~~~d~l~~l~~~~~v~~~~~~-~~w~digt~~~~~~a~~~~l~~~~~~----~~~~~~-~~~-~~~~~~~~~~~ 284 (361)
T TIGR02091 213 ES-SHDFGKDIIPRALEEGSVQAYLFS-GYWRDVGTIDSFWEANMDLVSVVPPF----DLYDRK-WPI-YTYNEFLPPAK 284 (361)
T ss_pred Cc-ccccHHHHHHHHhhcCceEEEeeC-CEEEECCCHHHHHHHHHHHhCCCchh----hccccC-Cce-ecCCCCCCCce
Confidence 11 123334445544555699999997 89999999999999999999875321 011000 000 01111233344
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (616)
.+++++.| +++.||++|.|+++ .|.+|+||++|.||++|+|.+|+|++++.||.+|+|.+|+||+++.|+.++.|+
T Consensus 285 ~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 285 FVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred EecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeC
Confidence 44444433 45566666666654 556666666666666666666666666666666666655555555555554443
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.4e-38 Score=346.74 Aligned_cols=367 Identities=17% Similarity=0.213 Sum_probs=263.4
Q ss_pred ccCCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCc
Q 007143 24 LARQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNF 103 (616)
Q Consensus 24 ~~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~ 103 (616)
++.+.|+|||||+|+|+||+| ..||+|+|++|+|||+|+|+.|..+|+++|+|+++++.+++++|+.. .
T Consensus 3 ~~~~~~~avILAaG~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~--------~ 71 (481)
T PRK14358 3 EQTRPLDVVILAAGQGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG--------S 71 (481)
T ss_pred cccCCceEEEECCCCCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc--------C
Confidence 445679999999999999997 58999999999999999999999999999999999988999998853 2
Q ss_pred EEEEEeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCC
Q 007143 104 TVKTIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPIT 178 (616)
Q Consensus 104 ~i~~i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~ 178 (616)
.+.++.++...|++++++... ..+. .+||+++||+ +.+.+|+.++++|++. ++.+|+++.+..
T Consensus 72 ~i~~v~~~~~~Gt~~al~~~~--~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-----~~~~ti~~~~~~----- 139 (481)
T PRK14358 72 GVAFARQEQQLGTGDAFLSGA--SALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-----GSAMTILTGELP----- 139 (481)
T ss_pred CcEEecCCCcCCcHHHHHHHH--HHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEEEcC-----
Confidence 356666667789999988543 2332 4699999998 6778999999999775 467888877654
Q ss_pred cccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhh---hhcCCChh
Q 007143 179 HQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL---FTDNFDYQ 255 (616)
Q Consensus 179 ~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~l---f~dnfd~q 255 (616)
...+|| ++.+|. .++|..|.|||...... ...+++++|+|+++++++++ +.....
T Consensus 140 ~~~~yG----~v~~d~-~g~v~~~~Ek~~~~~~~---------------~~~~~~n~Giyi~~~~~~~~~~~i~~~~~-- 197 (481)
T PRK14358 140 DATGYG----RIVRGA-DGAVERIVEQKDATDAE---------------KAIGEFNSGVYVFDARAPELARRIGNDNK-- 197 (481)
T ss_pred CCCCce----EEEECC-CCCEEEEEECCCCChhH---------------hhCCeEEEEEEEEchHHHHHHHhcCCCcc--
Confidence 234677 788874 57999999987632110 01245679999999665444 432111
Q ss_pred hHHHHhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhh-hhccccc-cccCCCcccCCCcceeeecceEEcC
Q 007143 256 HLRRHFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKD-IIQRWTY-PYVPDVKFCGNRATKLERRGMYRAL 332 (616)
Q Consensus 256 ~lr~dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~d-il~r~~~-p~~p~~~~~~~~~~~~~~~~i~~~~ 332 (616)
. .+.++.+++...+ .|.++++|.+. +||.-++.-..|+.++.+ ++++-.+ .+.............+..+++++|+
T Consensus 198 ~-ge~~l~d~i~~~~~~g~~i~~~~~~-~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~ 275 (481)
T PRK14358 198 A-GEYYLTDLLGLYRAGGAQVRAFKLS-DPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGR 275 (481)
T ss_pred C-CeEEHHHHHHHHHHCCCeEEEEecC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECC
Confidence 0 0122333433332 45689999886 788888887777665543 4432111 0000000000112233457888999
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEE
Q 007143 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVL 411 (616)
Q Consensus 333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I 411 (616)
++.|+++|.|.+++.||++|.|+++|.|++|+||++|.|+++++|.+++|++++.|+.++.|. +++||+++.|+.++.|
T Consensus 276 ~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 276 DVTIEPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred CCEEeCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999986 6888888888886554
Q ss_pred -----CCCCEECC-----CcEECCCCEECCCCEEcc
Q 007143 412 -----KPGVVLSF-----KVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 412 -----~~g~vIg~-----~v~Ig~~~~v~~~~~v~~ 437 (616)
++++.+|. +++||.++.|++++++..
T Consensus 356 ~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~ 391 (481)
T PRK14358 356 KNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVAN 391 (481)
T ss_pred CCceecCCcccCceEEECCeEEcCCceEcCCEEEeC
Confidence 33333322 244445555555554443
No 16
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.8e-37 Score=342.21 Aligned_cols=332 Identities=17% Similarity=0.227 Sum_probs=240.6
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.++|||||+|.|+||++ ..||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+|+.+. ..+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-------~~i~~ 72 (459)
T PRK14355 3 NLAAIILAAGKGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-------GDVSF 72 (459)
T ss_pred cceEEEEcCCCCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-------CceEE
Confidence 48999999999999985 789999999999999999999999999999999999989999998652 13556
Q ss_pred EeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r 182 (616)
+.+...+|++++++.. +..+. +.||++.||+ +.+.+|..+++.|+.. ++.+|+...+.. ++.+
T Consensus 73 ~~~~~~~Gt~~al~~a--~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-----~~~~~v~~~~~~-----~~~~ 140 (459)
T PRK14355 73 ALQEEQLGTGHAVACA--APALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-----GAAVTVLTARLE-----NPFG 140 (459)
T ss_pred EecCCCCCHHHHHHHH--HHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCCc
Confidence 6667778999998864 34443 3599999998 6788999999999764 366777766543 3345
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHh
Q 007143 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHF 261 (616)
Q Consensus 183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~df 261 (616)
++ .+.+|. .++|..+.++|...... -.+++..+|||+++|+++ .++..-.....-.+.+
T Consensus 141 ~g----~v~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~ 200 (459)
T PRK14355 141 YG----RIVRDA-DGRVLRIVEEKDATPEE---------------RSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYY 200 (459)
T ss_pred CC----EEEEcC-CCCEEEEEEcCCCChhH---------------hhccEEEEEEEEEeHHHHHHHHHHcCccccCCcee
Confidence 66 566774 67899999876311000 013567899999999864 4443211100001123
Q ss_pred hhhhhhccc-cCceEEEEEccccc--hhhccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEEC
Q 007143 262 VKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQS 337 (616)
Q Consensus 262 v~~~l~~~i-~g~~I~~~~~~~~y--~~~V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~ 337 (616)
+.++++..+ .|.++++|.++ +| |.+++++++|.++++.+..+....+. +...+.. .......+++++++++.|+
T Consensus 201 ~~d~i~~l~~~g~~v~~~~~~-~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~-~~~~~i~~~v~ig~~~~I~ 278 (459)
T PRK14355 201 LTDIVAMAAAEGLRCLAFPVA-DPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID-PETTYIDRGVVIGRDTTIY 278 (459)
T ss_pred HHHHHHHHHHCCCeEEEEEcC-CHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC-CCceEECCCeEEcCCCEEe
Confidence 444444443 45689999987 55 88999999999998755543211110 0000111 1123445678888899999
Q ss_pred CCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCc
Q 007143 338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGV 403 (616)
Q Consensus 338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v 403 (616)
++|.|++++.||++|.|+++++|.+|+||++|.|+.+|+|.+++|++++.||.++++. ++.|++++
T Consensus 279 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~ 345 (459)
T PRK14355 279 PGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHV 345 (459)
T ss_pred CCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCC
Confidence 9999999999999999999999999999999999999999988888888887776663 33333333
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=5.4e-36 Score=329.70 Aligned_cols=361 Identities=17% Similarity=0.211 Sum_probs=259.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|+|||||+|+|+||+| .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+.+++++.+ | .+.++
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~--~------~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN--R------DVNWV 69 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC--C------CcEEE
Confidence 7899999999999997 78999999999999999999999999999999999988899998865 2 24455
Q ss_pred eCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143 109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~ 184 (616)
.+....|++++++.. ...+. +.|+++.||+ +...++..+++.|++. .+|+++.+.. +..+++
T Consensus 70 ~~~~~~G~~~ai~~a--~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-------~~~~~~~~~~-----~~~~~g 135 (451)
T TIGR01173 70 LQAEQLGTGHAVLQA--LPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN-------GITLLTAKLP-----DPTGYG 135 (451)
T ss_pred EcCCCCchHHHHHHH--HHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC-------CEEEEEEecC-----CCCCCC
Confidence 555567899888864 34453 3499999998 5677899999988652 2445544432 234566
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHhhh
Q 007143 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK 263 (616)
Q Consensus 185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~dfv~ 263 (616)
++.+|+ +++|..+.|+|...... . ...++.+|+|++++++| .++.+.+.-..-...++.
T Consensus 136 ----~v~~d~-~g~v~~~~ek~~~~~~~------~---------~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~ 195 (451)
T TIGR01173 136 ----RIIREN-DGKVTAIVEDKDANAEQ------K---------AIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLT 195 (451)
T ss_pred ----EEEEcC-CCCEEEEEEcCCCChHH------h---------cCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHH
Confidence 566764 57899999886421100 0 12356789999999985 444432110000011233
Q ss_pred hhhhccc-cCceEEEEEccccc--hhhccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEECCC
Q 007143 264 GLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRS 339 (616)
Q Consensus 264 ~~l~~~i-~g~~I~~~~~~~~y--~~~V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~~~ 339 (616)
.++...+ .|.++++|.+. +| |.++++++.|..+...+..+-...+. +...+ .........+++.+++++.|+++
T Consensus 196 ~~~~~l~~~g~~v~~~~~~-~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~~ig~~~~i~~~ 273 (451)
T TIGR01173 196 DVIALAVADGETVRAVQVD-DSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL-RDPARFDIRGTVEIGRDVEIDPN 273 (451)
T ss_pred HHHHHHHHCCCeEEEEEcC-ChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE-ecCCeEEECCccEECCCCEEcCC
Confidence 3333332 45789999886 66 78899999988776544332111110 11111 11123345677889999999999
Q ss_pred CEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEEC
Q 007143 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLS 418 (616)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg 418 (616)
+.|++++.||++|.|++++.|++++||++|.|+++|.|.+++|+++|.||++++|. +++|+++|+||+++.+. +++||
T Consensus 274 ~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~-~~~ig 352 (451)
T TIGR01173 274 VILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETK-NARIG 352 (451)
T ss_pred eEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeec-CcEEC
Confidence 99999999999999999999999999999999999999999999999999999997 68999999888887654 44555
Q ss_pred CC-----------cEECCCCEECCCCEEcc
Q 007143 419 FK-----------VVIGERFVVPAHSKVSL 437 (616)
Q Consensus 419 ~~-----------v~Ig~~~~v~~~~~v~~ 437 (616)
++ |.||.++.|++++++..
T Consensus 353 ~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~ 382 (451)
T TIGR01173 353 KGSKAGHLSYLGDAEIGSNVNIGAGTITCN 382 (451)
T ss_pred CCcEecceeeEeeeEEcCCcEECCCeEEeC
Confidence 43 45555666666655543
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.6e-36 Score=331.47 Aligned_cols=335 Identities=16% Similarity=0.177 Sum_probs=239.7
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
..+.|||||+|.|+||+| .+||+|+|++|+|||+|+|+.|.++|+++++|++++..+++.+++.... ..+.
T Consensus 3 ~~~~avILAaG~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~------~~~~ 73 (482)
T PRK14352 3 RPTAVIVLAAGAGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA------PEVD 73 (482)
T ss_pred CCceEEEEcCCCCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC------CccE
Confidence 357899999999999997 6899999999999999999999999999999999998889998886521 1345
Q ss_pred EEeCCCccCHHHHHHHHHhccccc----CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143 107 TIESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~ 180 (616)
++.++...|++++++.... .+. ++||+++||+ +...+|..+++.|++. ++.+|++..+.. +.
T Consensus 74 ~~~~~~~~Gt~~si~~al~--~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~-----~~~~~v~~~~~~-----~p 141 (482)
T PRK14352 74 IAVQDEQPGTGHAVQCALE--ALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE-----GNAVTVLTTTLD-----DP 141 (482)
T ss_pred EEeCCCCCCcHHHHHHHHH--HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc-----CCeEEEEEeecC-----CC
Confidence 5666677899999886432 332 3499999998 4567999999999864 356666655443 44
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhh-hhcCCChhhHHH
Q 007143 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSL-FTDNFDYQHLRR 259 (616)
Q Consensus 181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~l-f~dnfd~q~lr~ 259 (616)
.+|+ .+..+. .++|..+.|||...... ...+++.+|+|++++++|.. +..-+....-..
T Consensus 142 ~~yg----~~~~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e 201 (482)
T PRK14352 142 TGYG----RILRDQ-DGEVTAIVEQKDATPSQ---------------RAIREVNSGVYAFDAAVLRSALARLSSDNAQGE 201 (482)
T ss_pred CCCC----EEEECC-CCCEEEEEECCCCCHHH---------------hhcceEEEEEEEEEHHHHHHHHHhhCccccCCc
Confidence 5676 555553 67899999997632110 11345789999999999853 332111000001
Q ss_pred Hhhhhhhhccc-cCceEEEEEccccchhhccChhhH------HHHhhhhhccccccccCCCcccCCCcceeeecceEEcC
Q 007143 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY------DIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRAL 332 (616)
Q Consensus 260 dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY------~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~ 332 (616)
.++.++++..+ .|.++++|.++ +||.+++.++.| ..++++++..|.-+- + . .. .....+..+++++++
T Consensus 202 ~~l~d~i~~l~~~g~~V~~~~~~-g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g-~-~-~~-~~~~~~i~~~v~ig~ 276 (482)
T PRK14352 202 LYLTDVLAIAREAGHRVGAHHAD-DSAEVAGVNDRVQLAALGAELNRRIVEAWMRAG-V-T-IV-DPATTWIDVDVTIGR 276 (482)
T ss_pred EeHHHHHHHHHHCCCeEEEEecC-CcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCC-C-E-EE-CCCeEEEeCCEEECC
Confidence 23344444433 45689999987 899999988887 555666666553211 0 0 00 011345667899999
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCC
Q 007143 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAG 408 (616)
Q Consensus 333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~ 408 (616)
++.|++++.|+++++||++|.|++++.|.+++||++|.|+. +.+.+++|++++.||.+|.+. +++|++++.||.+
T Consensus 277 ~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~ 352 (482)
T PRK14352 277 DVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF 352 (482)
T ss_pred CcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence 99999999999999999999999999998888888888763 667777777777777777764 5666665555543
No 19
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1e-35 Score=328.00 Aligned_cols=313 Identities=13% Similarity=0.191 Sum_probs=198.5
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.|+|||||+|.|+||++ .+||+|+|++|+|||+|++++|..+|+++++|++++..+++++++... .+.+
T Consensus 5 ~~~aiIlAaG~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~--------~~~~ 73 (456)
T PRK09451 5 AMSVVILAAGKGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE--------PLNW 73 (456)
T ss_pred CceEEEEcCCCCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC--------CcEE
Confidence 48999999999999984 689999999999999999999999999999999998888999988541 3556
Q ss_pred EeCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~ 183 (616)
+.++...|++++++... .++. +.||+++||+ +.+.++..+++.|++. + +++++.+.. .+.+|
T Consensus 74 i~~~~~~Gt~~al~~a~--~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-----~--~~i~~~~~~-----~~~~y 139 (456)
T PRK09451 74 VLQAEQLGTGHAMQQAA--PFFADDEDILMLYGDVPLISVETLQRLRDAKPQG-----G--IGLLTVKLD-----NPTGY 139 (456)
T ss_pred EECCCCCCcHHHHHHHH--HhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC-----C--EEEEEEEcC-----CCCCc
Confidence 66667789999998643 3343 3499999998 6778999999887542 2 223333322 23467
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCCChhhHHHHhh
Q 007143 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQHLRRHFV 262 (616)
Q Consensus 184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnfd~q~lr~dfv 262 (616)
+ ++ .+. .++|..+.|||...... ...++..+|+|++++++|. ++..-.+...-...++
T Consensus 140 G----~v-~~~-~g~V~~~~EKp~~~~~~---------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l 198 (456)
T PRK09451 140 G----RI-TRE-NGKVVGIVEQKDATDEQ---------------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYI 198 (456)
T ss_pred e----EE-Eec-CCeEEEEEECCCCChHH---------------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeH
Confidence 6 54 443 67999999998521110 0134678999999998885 4433211100012344
Q ss_pred hhhhhccc-cCceEEEEEcc-----ccc--hhhccChhhHHHHhh--hhhccccccccCCCcccCCCcceeeecceEEcC
Q 007143 263 KGLLLDDI-MGYKIFTHEIH-----SSY--AARIDNYRSYDIVSK--DIIQRWTYPYVPDVKFCGNRATKLERRGMYRAL 332 (616)
Q Consensus 263 ~~~l~~~i-~g~~I~~~~~~-----~~y--~~~V~s~~sY~~a~~--dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~ 332 (616)
.++++..+ .|.++++|... .+| |.+++++++|+++++ .++..-...+.|.. ....+++.++.
T Consensus 199 ~d~i~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~--------~~~~~~~~ig~ 270 (456)
T PRK09451 199 TDIIALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPAR--------FDLRGTLTHGR 270 (456)
T ss_pred HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCE--------EEECCcEEECC
Confidence 45555443 45789998632 245 667999999999874 23221100011110 11113344555
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (616)
Q Consensus 333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (616)
++.|+++|.|.+++.||++|.|+++|.|.+|+||++|.|+++|.|.+++|++++.|++++.|
T Consensus 271 ~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i 332 (456)
T PRK09451 271 DVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARL 332 (456)
T ss_pred CCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEE
Confidence 55555555555555555555555555555555555555555555544444444444444433
No 20
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=7.1e-36 Score=297.07 Aligned_cols=214 Identities=49% Similarity=0.848 Sum_probs=184.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCC-C-CcEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQ-P-NFTVK 106 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~-~-~~~i~ 106 (616)
+||||||+|+|+||+|+|..+||||+||+|+|||+|+|++|.++|+++|+|+++++.+++++|+++..|+.. . .+.+.
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 689999999999999999999999999999999999999999999999999999999999999988654321 1 24677
Q ss_pred EEeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143 107 TIESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~ 186 (616)
++.+++..++|+|++.+.++..+.++||+++||++++.+|.++++.|+++++.++++.||+++++..+. .+++++..
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~---~~~~~~~~ 157 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPP---HRTRRTGE 157 (217)
T ss_pred EEeCCCcCccchHHHHHhhccccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCc---cccccCCC
Confidence 777778889999999887777778889999999999999999999999976666789999999887643 22345444
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCc-ceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143 187 ELFMAIDPNTKQLLYYEDKADHSKG-TICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (616)
Q Consensus 187 ~~vv~id~~~~rvl~~~e~p~~~~~-~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl 245 (616)
..++.+|.++++|+++.++|..+.. .+.+++.++.+++.+.+++||+|+|||||+|+||
T Consensus 158 ~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 158 EFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 4588888777999999999975432 4568999999999999999999999999999985
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-34 Score=318.22 Aligned_cols=363 Identities=14% Similarity=0.152 Sum_probs=219.1
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i 105 (616)
.+.+.|||||+|.|+||++ ..||+|+|++|+|||+|+|+.|..+|+++++|++++..+.+.+++... +..+
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~------~~~~ 73 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI------APDA 73 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc------CCCc
Confidence 3458999999999999985 679999999999999999999999999999999999888898888542 1224
Q ss_pred EEEeCCCccCHHHHHHHHHhcccc---cCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143 106 KTIESHNIISAGDALRLIYEQNVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (616)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i---~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~ 180 (616)
.++.+....|++++++... ..+ .++|++++||+ +....|..+++.+ +. ++.+++...+.. +.
T Consensus 74 ~~~~~~~~~G~~~sl~~a~--~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~-~~-----~~~~~i~~~~~~-----~~ 140 (446)
T PRK14353 74 EIFVQKERLGTAHAVLAAR--EALAGGYGDVLVLYGDTPLITAETLARLRERL-AD-----GADVVVLGFRAA-----DP 140 (446)
T ss_pred eEEEcCCCCCcHHHHHHHH--HHHhccCCCEEEEeCCcccCCHHHHHHHHHhH-hc-----CCcEEEEEEEeC-----CC
Confidence 4445556678888888543 333 34599999998 4556788888743 32 244455544432 33
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHH
Q 007143 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRR 259 (616)
Q Consensus 181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~ 259 (616)
.+++ ++.+ +.++|..+.|||...... ....+...|+|+++++.+ +++..-..-+.-..
T Consensus 141 ~~~g----~~~~--~~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~ 199 (446)
T PRK14353 141 TGYG----RLIV--KGGRLVAIVEEKDASDEE---------------RAITLCNSGVMAADGADALALLDRVGNDNAKGE 199 (446)
T ss_pred Ccce----EEEE--CCCeEEEEEECCCCChHH---------------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCc
Confidence 4565 4445 357899999987521100 012355689999998765 44432111000011
Q ss_pred Hhhhhhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhcc----cc---cc-ccCCCcccCCCcceeeecceEE
Q 007143 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQR----WT---YP-YVPDVKFCGNRATKLERRGMYR 330 (616)
Q Consensus 260 dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r----~~---~p-~~p~~~~~~~~~~~~~~~~i~~ 330 (616)
.++.++++..+ .|.+++++..+..+|.+|+++++|..++..+..+ +. .+ +.|.. .+......+
T Consensus 200 ~~~~d~~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~I 271 (446)
T PRK14353 200 YYLTDIVAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPET--------VFFSYDTVI 271 (446)
T ss_pred EeHHHHHHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCe--------EEECCceEE
Confidence 23344444432 5678999988756899999999998887533221 10 01 11211 112223334
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCc-----------------
Q 007143 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGC----------------- 392 (616)
Q Consensus 331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~----------------- 392 (616)
++++.|++++.|++++.||++|.|++++.|.+++||++|.||+++.|. +++|+++|.||.+|
T Consensus 272 ~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~ 351 (446)
T PRK14353 272 GRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLT 351 (446)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCee
Confidence 444444444444444444444444444444445555555555555553 44445554444444
Q ss_pred EEeceEECCCcEECCCCEE-------CCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 393 ELRHVIVCDGVIMKAGAVL-------KPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I-------~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
.+.+++||++|.||.++++ ..+++||++|.||.+++|.++++|+...
T Consensus 352 ~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~ 405 (446)
T PRK14353 352 YIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGA 405 (446)
T ss_pred EEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCC
Confidence 4445556666666665544 2245566666666666555555555443
No 22
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.1e-35 Score=323.25 Aligned_cols=353 Identities=15% Similarity=0.147 Sum_probs=241.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.+.|||||||.|+||+ ..+||+|+|++|+|||+|+++.|...++++++|++++..+.+++++.. ..+.+
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~--------~~~~~ 73 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD--------EDARF 73 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc--------cCceE
Confidence 4899999999999997 378999999999999999999999999999999999988888887753 23556
Q ss_pred EeCCCccCHHHHHHHHHhccccc----CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~ 181 (616)
+.++...|++++++... ..+. ++||+++||+ +...++..+++.|+. +..|++..+.. .+.
T Consensus 74 v~~~~~~Gt~~al~~a~--~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-------~~~~l~~~~~~-----~~~ 139 (456)
T PRK14356 74 VLQEQQLGTGHALQCAW--PSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAG-------ADLAFMTLTLP-----DPG 139 (456)
T ss_pred EEcCCCCCcHHHHHHHH--HHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhc-------CCEEEEEEEcC-----CCC
Confidence 66666789999888643 3342 4599999998 566789999988752 44555555443 234
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhh-hcCCChhhHHHH
Q 007143 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLF-TDNFDYQHLRRH 260 (616)
Q Consensus 182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf-~dnfd~q~lr~d 260 (616)
.|+ ++.. +.++|..+.|+|..... .. .+ .++++.+|||+++++++..+ ..-.+...-...
T Consensus 140 ~~g----~v~~--~~g~V~~~~ek~~~~~~-------~~--~~----~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~ 200 (456)
T PRK14356 140 AYG----RVVR--RNGHVAAIVEAKDYDEA-------LH--GP----ETGEVNAGIYYLRLDAVESLLPRLTNANKSGEY 200 (456)
T ss_pred Cce----EEEE--cCCeEEEEEECCCCChH-------Hh--hh----hcCeEEEEEEEEEHHHHHHHHHhccCcccCCcE
Confidence 566 4444 36899999988652100 00 00 14567899999999988643 221110000011
Q ss_pred hhhhhhhcc-ccCceEEEEEcccc-chhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECC
Q 007143 261 FVKGLLLDD-IMGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR 338 (616)
Q Consensus 261 fv~~~l~~~-i~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~ 338 (616)
++..++... ..|.+++++...+. +|.+|+++++|..+...+..+....+.+..............+++++++++.|..
T Consensus 201 ~ltd~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~ 280 (456)
T PRK14356 201 YITDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYG 280 (456)
T ss_pred EHHHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeC
Confidence 223333332 25678999988632 5799999999998876655442211111100000001122233445555555555
Q ss_pred CCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEE
Q 007143 339 SAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVL 417 (616)
Q Consensus 339 ~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vI 417 (616)
.|.|++++.||++|.|+++|+|.+++||++|.|+++|.|.+++|+++|.||++++|. +++|++++.||+++.|. +++|
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~-~~~i 359 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMK-KAVL 359 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceee-eeEe
Confidence 566666788899999999999988999999999999999999999999999999886 78888888888877664 3555
Q ss_pred CCCcEECC
Q 007143 418 SFKVVIGE 425 (616)
Q Consensus 418 g~~v~Ig~ 425 (616)
++++.|+.
T Consensus 360 ~~~~~i~~ 367 (456)
T PRK14356 360 GKGAKANH 367 (456)
T ss_pred cCCcEecc
Confidence 55544433
No 23
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4e-34 Score=313.07 Aligned_cols=363 Identities=16% Similarity=0.129 Sum_probs=236.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.++|||||+|.|+||++ .+||+|+|++|+|||+|+++.|..+ +++|+|++++..+++++++.+.. ..+.
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~------~~v~ 70 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGKPMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF------PGVI 70 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCccHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC------CceE
Confidence 357899999999999997 7899999999999999999999987 78999999999999999987521 1244
Q ss_pred EEeC--CCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143 107 TIES--HNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (616)
Q Consensus 107 ~i~~--~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~ 184 (616)
++.+ +...|++++++.+ + ...+.||+++||...- ....+++|.+. ++.+|+.+.+.. ++.+++
T Consensus 71 ~~~~~~~~~~gt~~al~~~--~-~~~d~vlv~~gD~p~~--~~~~l~~l~~~-----~~~~~v~~~~~~-----~~~~~g 135 (430)
T PRK14359 71 FHTQDLENYPGTGGALMGI--E-PKHERVLILNGDMPLV--EKDELEKLLEN-----DADIVMSVFHLA-----DPKGYG 135 (430)
T ss_pred EEEecCccCCCcHHHHhhc--c-cCCCeEEEEECCccCC--CHHHHHHHHhC-----CCCEEEEEEEcC-----CCccCc
Confidence 4433 3457899999853 1 1234599999998321 12344444442 244566665543 233565
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC-CChhhHHHHhhh
Q 007143 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-FDYQHLRRHFVK 263 (616)
Q Consensus 185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn-fd~q~lr~dfv~ 263 (616)
.+.++ ++++..+.++|..... . ....+.++|+|++++++|..+... .....-...++.
T Consensus 136 ----~v~~d--~g~v~~i~e~~~~~~~-------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~ 194 (430)
T PRK14359 136 ----RVVIE--NGQVKKIVEQKDANEE-------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLT 194 (430)
T ss_pred ----EEEEc--CCeEEEEEECCCCCcc-------------c--ccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehh
Confidence 45554 5799999887642110 0 113567899999999999855321 100000112334
Q ss_pred hhhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhccccc--------cccCCCcccCCCcceeeecceEEcCCc
Q 007143 264 GLLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRWTY--------PYVPDVKFCGNRATKLERRGMYRALEI 334 (616)
Q Consensus 264 ~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~--------p~~p~~~~~~~~~~~~~~~~i~~~~~v 334 (616)
++++..+ .|.+++++..+..+|.+|+++++|..+...+..+... +..|...+... -....+.++++.++
T Consensus 195 d~i~~l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~--~~~i~g~~~ig~~~ 272 (430)
T PRK14359 195 DIIALAIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIES--GVEFEGECELEEGV 272 (430)
T ss_pred hHHHHHHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECC--CcEEcCceEECCCC
Confidence 4443332 4688999988757999999999999997554433211 01111111111 11233456666666
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCC----------EECCCcEEeceEECCCcE
Q 007143 335 EQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNV----------IIEDGCELRHVIVCDGVI 404 (616)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v----------~Ig~~~~I~~siIg~~v~ 404 (616)
.|++++.|+ ++.||++|.|++ ++|.+|+||++|.|+++|+|.+|+||++| +||.++.|.+|+||++|.
T Consensus 273 ~I~~~~~i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ 350 (430)
T PRK14359 273 RILGKSKIE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTN 350 (430)
T ss_pred EECCCeEEE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCE
Confidence 666666665 677777777765 56678888888888888888877777777 555556667788888888
Q ss_pred ECCCCEECC-------CCEECCCcEECCCCEECCCCEEcccc
Q 007143 405 MKAGAVLKP-------GVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 405 Ig~~~~I~~-------g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
||.++++.. +++||++|.||.++.|.++.+|+...
T Consensus 351 ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~ 392 (430)
T PRK14359 351 IGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNV 392 (430)
T ss_pred ECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCC
Confidence 888765542 25666666666666555555555443
No 24
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2e-34 Score=297.16 Aligned_cols=355 Identities=19% Similarity=0.245 Sum_probs=263.3
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.+.+||||+|.||||+. .+||.|-||+|+||++|+|+.....+.+++.+|.+|.++++++.+.+. .++.+
T Consensus 2 ~~~~vILAAGkGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-------~~v~~ 71 (460)
T COG1207 2 SLSAVILAAGKGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-------DDVEF 71 (460)
T ss_pred CceEEEEecCCCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-------cCceE
Confidence 57899999999999997 899999999999999999999999999999999999999999998752 25788
Q ss_pred EeCCCccCHHHHHHHHHhcccc----cCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143 108 IESHNIISAGDALRLIYEQNVI----HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i----~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~ 181 (616)
+.+.+.+|||+|+... +..+ .+++|+++||+ |+...|+.+++.|... ++.+|++..... .++
T Consensus 72 v~Q~eqlGTgHAV~~a--~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~-----~~~~tvLt~~~~-----dP~ 139 (460)
T COG1207 72 VLQEEQLGTGHAVLQA--LPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAH-----GAAATVLTAELD-----DPT 139 (460)
T ss_pred EEecccCChHHHHHhh--hhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhc-----CCceEEEEEEcC-----CCC
Confidence 8899999999999964 4445 24699999999 7777899999999875 366666666544 344
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhh-HHHH
Q 007143 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQH-LRRH 260 (616)
Q Consensus 182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~-lr~d 260 (616)
.|| =++.+ ..++|..+.|..+..... + .-..+++|+|+|....|.-+-....-.. -.+-
T Consensus 140 GYG----RIvr~-~~g~V~~IVE~KDA~~ee--------k-------~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEY 199 (460)
T COG1207 140 GYG----RIVRD-GNGEVTAIVEEKDASEEE--------K-------QIKEINTGIYAFDGAALLRALPKLSNNNAQGEY 199 (460)
T ss_pred Ccc----eEEEc-CCCcEEEEEEcCCCCHHH--------h-------cCcEEeeeEEEEcHHHHHHHHHHhccccccCcE
Confidence 666 34444 367888888876532111 0 1234678999998886653322111000 0123
Q ss_pred hhhhhhhc-cccCceEEEEEccc-cchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEE-C
Q 007143 261 FVKGLLLD-DIMGYKIFTHEIHS-SYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQ-S 337 (616)
Q Consensus 261 fv~~~l~~-~i~g~~I~~~~~~~-~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i-~ 337 (616)
++.+++.- ...|.++.++..++ .-...|++-..+..+.+-+-+|-.. -+...++++ .
T Consensus 200 YLTDvI~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~--------------------~~m~~GVtl~d 259 (460)
T COG1207 200 YLTDVIAIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAE--------------------KLMLAGVTLID 259 (460)
T ss_pred eHHHHHHHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHH--------------------HHHHcCcEEeC
Confidence 44555443 23678999988873 2456677766666655444333110 001122222 1
Q ss_pred -CCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCC
Q 007143 338 -RSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGV 415 (616)
Q Consensus 338 -~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~ 415 (616)
....|...+.||.+|.|.+++.| ++++||++|+||++|+|.+|.|++++.|...++|++|.|+++|.||+.+.+.||+
T Consensus 260 P~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~ 339 (460)
T COG1207 260 PATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGA 339 (460)
T ss_pred CCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcC
Confidence 23456677778888888888888 4888999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcEECC-----CCEECCCCEEccccCCCCC
Q 007143 416 VLSFKVVIGE-----RFVVPAHSKVSLLQQPTVH 444 (616)
Q Consensus 416 vIg~~v~Ig~-----~~~v~~~~~v~~~~~~~~~ 444 (616)
.|+++++||. ++.|++|++++|++|.+|-
T Consensus 340 ~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA 373 (460)
T COG1207 340 VLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDA 373 (460)
T ss_pred cccCCCeEeeeEEEecccccCCccccceeeeccc
Confidence 9999999998 5568899999999999974
No 25
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2e-33 Score=309.92 Aligned_cols=299 Identities=17% Similarity=0.207 Sum_probs=188.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.++|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|.++|+++++|+++++.+++++|+... +.
T Consensus 1 m~~~avIlAaG~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~~---------~~ 68 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGDR---------SE 68 (458)
T ss_pred CCceEEEEeCCCCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcCC---------cE
Confidence 457999999999999985 789999999999999999999999999999999999989999887541 33
Q ss_pred EEeCCCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143 107 TIESHNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~ 181 (616)
++.+....|++++++... .++. +.||++.||. +...+|..+++.|++. ++..|+++.... +..
T Consensus 69 ~~~~~~~~g~~~al~~a~--~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-----~~~~t~~~~~~~-----~~~ 136 (458)
T PRK14354 69 FALQEEQLGTGHAVMQAE--EFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-----KAAATILTAIAE-----NPT 136 (458)
T ss_pred EEEcCCCCCHHHHHHHHH--HHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-----CCceEEEEEEcC-----CCC
Confidence 444556788999888643 3343 3499999996 5677999999999764 356666665543 233
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhH-HhhhhcCCChhhHHHH
Q 007143 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEV-LSLFTDNFDYQHLRRH 260 (616)
Q Consensus 182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~v-l~lf~dnfd~q~lr~d 260 (616)
+++ ++.+|+ +++|..+.++|... +.- -...+..+|+|+++++. ++.+..-..-..-...
T Consensus 137 ~~g----~v~~d~-~~~V~~~~ek~~~~-------~~~--------~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~ 196 (458)
T PRK14354 137 GYG----RIIRNE-NGEVEKIVEQKDAT-------EEE--------KQIKEINTGTYCFDNKALFEALKKISNDNAQGEY 196 (458)
T ss_pred Cce----EEEEcC-CCCEEEEEECCCCC-------hHH--------hcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcE
Confidence 555 555664 67899999876311 000 01245688999999974 4554321100000011
Q ss_pred hhhhhhhccc-cCceEEEEEccccc--hhhccChhhHHHHhhhhhcccccc-ccCCCcccCCCcceeeecceEEcCCcEE
Q 007143 261 FVKGLLLDDI-MGYKIFTHEIHSSY--AARIDNYRSYDIVSKDIIQRWTYP-YVPDVKFCGNRATKLERRGMYRALEIEQ 336 (616)
Q Consensus 261 fv~~~l~~~i-~g~~I~~~~~~~~y--~~~V~s~~sY~~a~~dil~r~~~p-~~p~~~~~~~~~~~~~~~~i~~~~~v~i 336 (616)
++.+++...+ .+.++++|.++ ++ |.++.++.+|..++..+..++... +.+...+.. +...+..+++.+++++.+
T Consensus 197 ~~~d~~~~l~~~g~~v~~~~~~-g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~-~~~~~i~~~~~ig~~~~i 274 (458)
T PRK14354 197 YLTDVIEILKNEGEKVGAYQTE-DFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID-PESTYIDADVEIGSDTVI 274 (458)
T ss_pred eHHHHHHHHHHCCCeEEEEecC-CcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC-CCeEEECCCcEECCCCEE
Confidence 1233333322 46789999886 45 456778888887765443322100 001110000 011223344445555555
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEE
Q 007143 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTI 371 (616)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~I 371 (616)
++++.|++++.||++|.|++++.|.+++||++|.|
T Consensus 275 ~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I 309 (458)
T PRK14354 275 EPGVVIKGNTVIGEDCVIGPGSRIVDSTIGDGVTI 309 (458)
T ss_pred eCCeEEecceEECCCCEECCCcEEeccEECCCCEE
Confidence 55555555566666666666666555544444444
No 26
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.6e-33 Score=306.28 Aligned_cols=315 Identities=17% Similarity=0.218 Sum_probs=197.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|+|||||+|.|+||++ .+||+|+|++|+|||+|+|+.|...+ ++|+|++++..+.+++|+.. + +.++
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~-------~--~~~~ 67 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE-------W--VKIF 67 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCeeHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc-------c--cEEE
Confidence 7899999999999985 78999999999999999999999975 89999999888888888754 1 3345
Q ss_pred eCCCccCHHHHHHHHHhccccc--CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143 109 ESHNIISAGDALRLIYEQNVIH--GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~ 184 (616)
.++..+|++++++... .++. +.|++++||+ +.+.++.++++.|+++ ++.+|+++.+.. +..+|+
T Consensus 68 ~~~~~~g~~~ai~~a~--~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-----~~d~ti~~~~~~-----~~~~~g 135 (448)
T PRK14357 68 LQEEQLGTAHAVMCAR--DFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK-----GADVTILVADLE-----DPTGYG 135 (448)
T ss_pred ecCCCCChHHHHHHHH--HhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc-----CCeEEEEEEEcC-----CCCCcE
Confidence 5567789999998643 4453 3499999997 7788999999999764 467888887654 334666
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHhhh
Q 007143 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVK 263 (616)
Q Consensus 185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~dfv~ 263 (616)
++.++ .+++ .+.++|..+... -..++..+|+|++++++| +++.+-+....-...++.
T Consensus 136 ----~v~~d--~g~v-~~~e~~~~~~~~---------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~ 193 (448)
T PRK14357 136 ----RIIRD--GGKY-RIVEDKDAPEEE---------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLT 193 (448)
T ss_pred ----EEEEc--CCeE-EEEECCCCChHH---------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHH
Confidence 56665 4677 666655321100 012467899999999985 445421100000011222
Q ss_pred hhhhccccCceEEEEEccccchh--hccChhhHHHHhhhhhcccccccc-CCCcccCCCcceeeecceEEcCCcEECCCC
Q 007143 264 GLLLDDIMGYKIFTHEIHSSYAA--RIDNYRSYDIVSKDIIQRWTYPYV-PDVKFCGNRATKLERRGMYRALEIEQSRSA 340 (616)
Q Consensus 264 ~~l~~~i~g~~I~~~~~~~~y~~--~V~s~~sY~~a~~dil~r~~~p~~-p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~ 340 (616)
+++... .++++|... +||. .++++..|..+...+-.+....+. +...+.. ....+..+++.++.++.|++.+
T Consensus 194 d~i~~~---~~v~~~~~~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~Ig~~~~i~~~~ 268 (448)
T PRK14357 194 DAVNFA---EKVRVVKTE-DLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILD-PNTTYIHYDVEIGMDTIIYPMT 268 (448)
T ss_pred HHHHhh---hheeEEecC-CHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeC-CCcEEEccceEECCCcEEcCCc
Confidence 333322 347787775 6754 566887777654332211000000 1101000 0112334455666666666666
Q ss_pred EECCCcEECCCCEECCCCEEeceEECCCCEE----------------CCCCEEe-ceEECCCCEECCCcEEe
Q 007143 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTI----------------GSNVLIE-GSYIWDNVIIEDGCELR 395 (616)
Q Consensus 341 ~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~I----------------g~~~~I~-~s~I~~~v~Ig~~~~I~ 395 (616)
.|++++.||++|.|++++.|.+|+||++|.| |++++|. +++|+++++||.++.+.
T Consensus 269 ~I~~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~ 340 (448)
T PRK14357 269 FIEGKTRIGEDCEIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIK 340 (448)
T ss_pred EEEeeeEECCCcEECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeee
Confidence 6666666777777777666655555555544 4444442 35555555555555443
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.6e-32 Score=297.28 Aligned_cols=319 Identities=19% Similarity=0.255 Sum_probs=197.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
+.+||||+|.|+||++ .+||+|+|++|+|||+|+|+.|..+|+.+++|++++..+++.+++.+. ..+.++
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~-------~~i~~v 71 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL-------PGLEFV 71 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc-------CCeEEE
Confidence 6799999999999986 789999999999999999999999999999999999888898888641 135566
Q ss_pred eCCCccCHHHHHHHHHhc-ccccCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 109 ESHNIISAGDALRLIYEQ-NVIHGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~-~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
.+....|++++++..... ....++||++.||+ +...+|..+++.|++. ++.+|++..+.. ++.+++
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~-----~~~~~~~~~~~~-----~~~~~g- 140 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS-----NADVTLLTARLP-----NPKGYG- 140 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEecC-----CCCCcc-
Confidence 666667888888754322 11134599999998 6788999999999864 356676655543 334566
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhh-cCCChhhHHHHhhhh
Q 007143 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFT-DNFDYQHLRRHFVKG 264 (616)
Q Consensus 186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~-dnfd~q~lr~dfv~~ 264 (616)
++.+|+ +++|..+.++|...... -.+++..+|+|++++++|..+. +-.....-.+.++.+
T Consensus 141 ---~~~~d~-~g~v~~~~ek~~~~~~~---------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td 201 (450)
T PRK14360 141 ---RVFCDG-NNLVEQIVEDRDCTPAQ---------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTD 201 (450)
T ss_pred ---EEEECC-CCCEEEEEECCCCChhH---------------hcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHH
Confidence 566764 68999999987521000 0245788999999998775432 211100001223344
Q ss_pred hhhccccCceEEEEEccccch--hhccChhhHHHHhhh----hhccccccccCCCcccCCCcceeeecceEEcCCcEECC
Q 007143 265 LLLDDIMGYKIFTHEIHSSYA--ARIDNYRSYDIVSKD----IIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSR 338 (616)
Q Consensus 265 ~l~~~i~g~~I~~~~~~~~y~--~~V~s~~sY~~a~~d----il~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~ 338 (616)
+++.. ..++.+.+. +++ ..++++..+..+..- +...|..+-.+ +... ......++++++.++.|++
T Consensus 202 ~i~~~---~~~~~~~v~-~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~---~i~~-~~~~i~~~~~ig~~~~i~~ 273 (450)
T PRK14360 202 TVSLL---DPVMAVEVE-DYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVT---FIDP-ASCTISETVELGPDVIIEP 273 (450)
T ss_pred HHHHH---hhceEEecC-CHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcE---EecC-CeEEEeCCEEECCCCEECC
Confidence 43332 124555554 444 448888888765443 22345333222 1100 0111223444555555555
Q ss_pred CCEECCCcEECCCCEECCCCEEec----------------eEECCCCEECCCCEEe-ceEECCCCEECCCcEEe
Q 007143 339 SAQVGSFTVIGYGTKIGSNSKISD----------------SVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR 395 (616)
Q Consensus 339 ~~~I~~~~~Ig~~~~Ig~~~~I~~----------------s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~ 395 (616)
++.|++++.||++|.|++++.|.+ ++||++|.||++|+|. ++.|+++|.|+.++.|.
T Consensus 274 ~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 274 QTHLRGNTVIGSGCRIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIK 347 (450)
T ss_pred CCEEeCCcEECCCCEECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEe
Confidence 555555555555555555554443 3444444555555553 45555555555555443
No 28
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=2.2e-33 Score=278.57 Aligned_cols=209 Identities=27% Similarity=0.434 Sum_probs=173.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
|||||||||+|+||+|+|...||+|+|++|+|||+|+|++|.++|+++|+|++++. .+++++++....|....+..+.+
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 69999999999999999999999999999999999999999999999999999964 56788888765443322344555
Q ss_pred EeCCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC----Cccccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI----THQSRL 183 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~----~~~~r~ 183 (616)
+......|+|++++.+.. .+.++|+|++||++++.++..++++|++. ++.|||++.+..+... +.+.+.
T Consensus 81 ~~~~~~~gt~~al~~~~~--~i~~d~lv~~~D~i~~~~l~~~l~~h~~~-----~~~~t~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04198 81 IVLDEDMGTADSLRHIRK--KIKKDFLVLSCDLITDLPLIELVDLHRSH-----DASLTVLLYPPPVSSEQKGGKGKSKK 153 (214)
T ss_pred ecCCCCcChHHHHHHHHh--hcCCCEEEEeCccccccCHHHHHHHHhcc-----CCcEEEEEeccCCcccccCCcccccC
Confidence 556778999999997654 46788999999999999999999999874 5889999988654310 013455
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (616)
Q Consensus 184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl 245 (616)
..+..++++|++++||++|....+ .+..+.+++.+|++||++.+++||+|||||||+++|+
T Consensus 154 ~~~~~~~~~d~~~~~ll~~~~~~~-~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 154 ADERDVIGLDEKTQRLLFITSEED-LDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCCceEEEcCCCCEEEEECCHHH-hhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 556779999999999999988543 2345677999999999999999999999999999875
No 29
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=100.00 E-value=4.8e-32 Score=269.35 Aligned_cols=211 Identities=43% Similarity=0.717 Sum_probs=165.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC-CCCcEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS-QPNFTVKT 107 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~-~~~~~i~~ 107 (616)
|||||||+|+|+||.|+|...||+|+||+|+|||+|+|++|..+|+++|+|+++++.+.+.+|+.+..|.. ..+..+.+
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999998866531 11233433
Q ss_pred Ee--CCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 108 IE--SHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 108 i~--~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
+. ..+..|++++++ .++..+.++|||++||+++++++..++++ +|...+++.|||++....+.......+...
T Consensus 81 ~~~~~~~~~Gta~~l~--~~~~~i~~dflv~~gD~i~~~~l~~~l~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
T cd02507 81 ITSDLCESAGDALRLR--DIRGLIRSDFLLLSCDLVSNIPLSELLEE---RRKKDKNAIATLTVLLASPPVSTEQSKKTE 155 (216)
T ss_pred EEccCCCCCccHHHHH--HHhhcCCCCEEEEeCCEeecCCHHHHHHH---HHhhCcccceEEEEEeccCCCCccccccCC
Confidence 33 334556666655 46677888999999999999999999987 222334566776666654431101023444
Q ss_pred CceEEEEeCCC--CeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143 186 DELFMAIDPNT--KQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (616)
Q Consensus 186 ~~~vv~id~~~--~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl 245 (616)
+..++++|+++ .++++|.+++... ....++..+|.+++++.+++||+|||||||+|+|+
T Consensus 156 ~~~~i~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 156 EEDVIAVDSKTQRLLLLHYEEDLDED-LELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCcEEEEcCCCCceEEEechhhcCcC-cccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 55689999887 7888999887532 33447999999999999999999999999999975
No 30
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.97 E-value=1.4e-30 Score=269.76 Aligned_cols=239 Identities=15% Similarity=0.217 Sum_probs=183.5
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCC---------
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWF--------- 98 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~--------- 98 (616)
.|+|||||||+||||+|+|..+||||+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+... |.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~-~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTS-YELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhch-HHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999642 21
Q ss_pred -----------CCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc--------hhHHHHHHHHHHhhc
Q 007143 99 -----------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK 158 (616)
Q Consensus 99 -----------~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~h~~~~~ 158 (616)
...++++.++.+++.+|+|+|++. ++.++. ++|+|+.||++++ +++.++++.|+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~--a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~- 158 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILC--ARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETG- 158 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHH--HHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhC-
Confidence 012567888888889999999995 455676 4599999999887 69999999997542
Q ss_pred cCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehHhhhcCCceEEEecc
Q 007143 159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK 232 (616)
Q Consensus 159 ~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl 232 (616)
+.++++..... ...+|| ++.++. ..+ +|..+.|||..+.. ..+++
T Consensus 159 ----~~~~~~~~~~~-----~~~~yG----vv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------~~s~~ 209 (297)
T TIGR01105 159 ----RSQVLAKRMPG-----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSDL 209 (297)
T ss_pred ----CcEEEEEEcCC-----CCccce----EEEecccccCCCCeeeEeEEEECCCCccc----------------CCcCE
Confidence 34444443321 346888 787742 134 46899999853211 13578
Q ss_pred ccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 233 ~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
+++|+|+|+|+++.++...-.... ....+.++++..+.+.+++++.+. ++|.+|+++++|..++.++
T Consensus 210 ~~~GiYi~~~~i~~~l~~~~~~~~-ge~~ltd~i~~l~~~~~v~~~~~~-g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 210 MAVGRYVLSADIWAELERTEPGAW-GRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEEEEEECHHHHHHHhcCCCCCC-CeeeHHHHHHHHHhcCCEEEEEec-cEEECCCCHHHHHHHHHHH
Confidence 999999999999998865211110 111233444444456689999987 8999999999999998876
No 31
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.1e-31 Score=260.40 Aligned_cols=232 Identities=20% Similarity=0.285 Sum_probs=190.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHh-cCCCCCCCcEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLEN-SEWFSQPNFTVK 106 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~-~~~~~~~~~~i~ 106 (616)
|||||||+|.|||++|+|...||.|+||.+||||.|.|+.|..+|+++|.|++++ +...+++++.+ ++| +++++
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~----gv~it 76 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDF----GVDIT 76 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCcccc----CcceE
Confidence 7999999999999999999999999999999999999999999999999999987 68889999988 556 68999
Q ss_pred EEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 107 TIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
++.++++.|+++|+. .+++++. ++|+|+.||.++.-+|.++++.+.++. ...++++.++. .++|||
T Consensus 77 Y~~Q~~p~GlA~Av~--~a~~fv~~~~f~l~LGDNi~~~~l~~~~~~~~~~~-----~ga~i~~~~V~-----dP~rfG- 143 (286)
T COG1209 77 YAVQPEPDGLAHAVL--IAEDFVGDDDFVLYLGDNIFQDGLSELLEHFAEEG-----SGATILLYEVD-----DPSRYG- 143 (286)
T ss_pred EEecCCCCcHHHHHH--HHHhhcCCCceEEEecCceeccChHHHHHHHhccC-----CCcEEEEEEcC-----Ccccce-
Confidence 999999999999998 4678898 569999999977669999999887753 56678888876 567999
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHH-hhhh
Q 007143 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH-FVKG 264 (616)
Q Consensus 186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~d-fv~~ 264 (616)
|+.+|. +++++..+|||..+. ++|.-+|+|++.|.|++.+..--.- -|.. -+.+
T Consensus 144 ---V~e~d~-~~~v~~l~EKP~~P~-------------------SNlAvtGlY~~d~~Vf~~~~~ikPS--~RGElEITd 198 (286)
T COG1209 144 ---VVEFDE-DGKVIGLEEKPKEPK-------------------SNLAVTGLYFYDPSVFEAIKQIKPS--ARGELEITD 198 (286)
T ss_pred ---EEEEcC-CCcEEEeEECCCCCC-------------------CceeEEEEEEeChHHHHHHHcCCCC--CCCceEehH
Confidence 999986 459999999998553 6788899999999999987642110 0111 1223
Q ss_pred hhhccc-cCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143 265 LLLDDI-MGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (616)
Q Consensus 265 ~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~ 303 (616)
+++..+ .|.++...... ++|.+++++++|.+|+.-+..
T Consensus 199 ~i~~~i~~G~~~~~~~~~-G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 199 AIDLYIEKGYLVVAILIR-GWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred HHHHHHHcCcEEEEEEcc-ceEEecCChhhHHHHHHHHHH
Confidence 333333 56667766665 699999999999999988765
No 32
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.97 E-value=4.1e-30 Score=258.37 Aligned_cols=230 Identities=20% Similarity=0.336 Sum_probs=185.3
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|+|||||+|.|+||+|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++.+|+.+ |....++.+.+.
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~--~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKE--YEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhc--ccccCCeEEEec
Confidence 789999999999999999999999999999999999999999999999999999999999999974 422234566665
Q ss_pred eCCCccCHHHHHHHHHhccccc---CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 109 ESHNIISAGDALRLIYEQNVIH---GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
.+....|+++++... +..+. ++||+++||++++.++.++++.|+++ ++.+|+++.+.. +..+++
T Consensus 79 ~~~~~~G~~~al~~a--~~~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g- 145 (233)
T cd06425 79 IETEPLGTAGPLALA--RDLLGDDDEPFFVLNSDVICDFPLAELLDFHKKH-----GAEGTILVTKVE-----DPSKYG- 145 (233)
T ss_pred cCCCCCccHHHHHHH--HHHhccCCCCEEEEeCCEeeCCCHHHHHHHHHHc-----CCCEEEEEEEcC-----CccccC-
Confidence 556678999998864 34454 46999999999999999999999875 366788877653 345677
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhh
Q 007143 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265 (616)
Q Consensus 186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~ 265 (616)
++.+|.++++|+.+.+||.... ++++++|||+++++++..+.+.. .++..++++.+
T Consensus 146 ---~v~~d~~~~~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~--~~~~~~~~~~l 201 (233)
T cd06425 146 ---VVVHDENTGRIERFVEKPKVFV-------------------GNKINAGIYILNPSVLDRIPLRP--TSIEKEIFPKM 201 (233)
T ss_pred ---eEEEcCCCCEEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhcccCc--ccchhhhHHHH
Confidence 7888865789999999875221 35678999999999999887643 22234555544
Q ss_pred hhccccCceEEEEEccccchhhccChhhHHHHhhhhh
Q 007143 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDII 302 (616)
Q Consensus 266 l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil 302 (616)
+ ...++++|.++ +||.+|+++++|..+++.+|
T Consensus 202 ~----~~~~v~~~~~~-g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 202 A----SEGQLYAYELP-GFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred H----hcCCEEEEeeC-CEEEcCCCHHHHHHHHHHhC
Confidence 4 34689999997 89999999999999987653
No 33
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.97 E-value=5.5e-30 Score=259.32 Aligned_cols=234 Identities=23% Similarity=0.396 Sum_probs=185.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEE-EcCCcHHHHHHHHHhcC-CCCCCCcEEE
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFV-FCCAHSKQVIDYLENSE-WFSQPNFTVK 106 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~v-v~~~~~~~i~~~l~~~~-~~~~~~~~i~ 106 (616)
+|||||||+|+||+|+|..+||||+|++|+ |||+|+|++|..+|++++++ +++++.+++.+|+++.. | ++++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~~~----~~~i~ 76 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGYKF----GVKIE 76 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSGGG----TEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccccc----cccce
Confidence 699999999999999999999999999999 99999999999999999555 55578899999998854 3 36799
Q ss_pred EEeCCCccCHHHHHHHHHhcccccC-----CEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143 107 TIESHNIISAGDALRLIYEQNVIHG-----DFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~-----dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~ 181 (616)
++.+++..|+|+|++.+. ..+.. +||+++||++++.++.+++++|+++.. ...+++...+.. +..
T Consensus 77 ~i~~~~~~Gta~al~~a~--~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~-----~~~ 146 (248)
T PF00483_consen 77 YIVQPEPLGTAGALLQAL--DFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNA---DGTVTLLVVPVE-----DPS 146 (248)
T ss_dssp EEEESSSSCHHHHHHHTH--HHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSS---CESEEEEEEESS-----GGG
T ss_pred eeecccccchhHHHHHHH--HHhhhccccceEEEEeccccccchhhhHHHhhhcccc---cccccccccccc-----ccc
Confidence 998888899999999643 44443 299999999999999999999999752 124555555443 456
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc---CCChhhHH
Q 007143 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD---NFDYQHLR 258 (616)
Q Consensus 182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d---nfd~q~lr 258 (616)
++| ++.+| ++++|+.+.|||.... .+.++++|+|+++++++..+.+ +.. -.
T Consensus 147 ~~g----~v~~d-~~~~V~~~~EKP~~~~------------------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~---~~ 200 (248)
T PF00483_consen 147 RYG----VVEVD-EDGRVIRIVEKPDNPN------------------ASNLINTGIYIFKPEIFDFLLEMIKENA---RG 200 (248)
T ss_dssp GSE----EEEEE-TTSEEEEEEESCSSHS------------------HSSEEEEEEEEEETHHHHHHHHHHHTCT---TS
T ss_pred cce----eeeec-cceeEEEEeccCcccc------------------cceeccCceEEEcchHHHHHhhhhhccc---hh
Confidence 788 88898 4789999999986321 0567889999999999998842 211 12
Q ss_pred HHhhhhhhhccc-cCceEEEEEcccc-chhhccChhhHHHHhhhhhc
Q 007143 259 RHFVKGLLLDDI-MGYKIFTHEIHSS-YAARIDNYRSYDIVSKDIIQ 303 (616)
Q Consensus 259 ~dfv~~~l~~~i-~g~~I~~~~~~~~-y~~~V~s~~sY~~a~~dil~ 303 (616)
.+++.++++..+ .+..+.++...+. +|.+|++|++|.+|++++++
T Consensus 201 ~~~l~d~i~~~~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 201 EDFLTDAIPKLLEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 355666666554 4557778888744 89999999999999999875
No 34
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.97 E-value=6.1e-30 Score=260.96 Aligned_cols=235 Identities=20% Similarity=0.329 Sum_probs=184.1
Q ss_pred EEEEeCC--CCCCCCCCCCCCCcccceeCCeehHHHHHHHHHH-CCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 31 AILLADS--FTTKFRPITLERPKVLLPLVNVPMINYTLAWLEA-AGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 31 aVILA~g--~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~-~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
|||||+| +|+||+|+|..+||||+||+|+|||+|+|++|.. +|+++|+|++++..+++++|+.+... ..++.+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~--~~~~~i~~ 78 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ--EFNVPIRY 78 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc--ccCceEEE
Confidence 6899999 8999999999999999999999999999999999 69999999999999999999976321 12466777
Q ss_pred EeCCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~ 183 (616)
+.+.+..|+++++..+ +.++. ++|||++||++++.++.++++.|+++ ++.+|+++++.... ...++
T Consensus 79 ~~~~~~~Gt~~al~~a--~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~-----~~~~tl~~~~~~~~---~~~~y 148 (257)
T cd06428 79 LQEYKPLGTAGGLYHF--RDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKH-----GASGTILGTEASRE---QASNY 148 (257)
T ss_pred ecCCccCCcHHHHHHH--HHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHc-----CCCEEEEEEEcccc---ccccc
Confidence 7666778999998864 34442 45999999999999999999999875 36788888765322 34567
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh-----h---
Q 007143 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY-----Q--- 255 (616)
Q Consensus 184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~-----q--- 255 (616)
| ++.+|..+++|+.+.|||... .++++.+|+|+++++++..+.+...- +
T Consensus 149 g----~v~~d~~~g~v~~~~Ekp~~~-------------------~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~ 205 (257)
T cd06428 149 G----CIVEDPSTGEVLHYVEKPETF-------------------VSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGD 205 (257)
T ss_pred c----EEEEeCCCCeEEEEEeCCCCc-------------------ccceEEEEEEEECHHHHHHHhhhcccccccccccc
Confidence 7 777875578999999997521 13578899999999999887642110 0
Q ss_pred -------hHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 256 -------HLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 256 -------~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
....++..++++..+...++++|.++ +||.+|+++++|.++++.+
T Consensus 206 ~~~~~~~~~~~~~~~d~~~~l~~~~~v~~~~~~-g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 206 DNNREGRAEVIRLEQDVLTPLAGSGKLYVYKTD-DFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred ccccccccceeeehhhhhhHHhccCCEEEecCC-CeeecCCCHHHHHhHhhcC
Confidence 00112334555555555689999997 8999999999999998863
No 35
>PRK10122 GalU regulator GalF; Provisional
Probab=99.97 E-value=9e-30 Score=264.28 Aligned_cols=241 Identities=15% Similarity=0.210 Sum_probs=187.2
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC--------
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS-------- 99 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~-------- 99 (616)
.|+|||+|||+||||+|+|..+||||+||+|+|||+|+|++|..+|+++|+|++++..+++++|+.. .|..
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~-~~~l~~~~~~~~ 81 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDT-SYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhc-chhHHHHHhhcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999964 3411
Q ss_pred ------------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc--------hhHHHHHHHHHHhhc
Q 007143 100 ------------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERKK 158 (616)
Q Consensus 100 ------------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~h~~~~~ 158 (616)
..++++.++.+++..|+|+|+.. ++.++. ++|+|+.||++++ +++.++++.|++..
T Consensus 82 k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~--a~~~l~~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~- 158 (297)
T PRK10122 82 KRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILC--ARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETG- 158 (297)
T ss_pred hhhhHHhhhhccCCCceEEEeecCCcCchHHHHHH--HHHHcCCCCEEEEECCeeccCccccccchhHHHHHHHHHHhC-
Confidence 12567888888889999999985 455665 4599999999875 68999999997642
Q ss_pred cCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC---CCC---eEEEeeecCCCCCcceEeehHhhhcCCceEEEecc
Q 007143 159 KDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP---NTK---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDK 232 (616)
Q Consensus 159 ~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl 232 (616)
+.++++.... + ...+|| ++.+|. ..+ +|..+.|||..+.. ..+++
T Consensus 159 ----~~~~~~~~~~-~----~~~~yG----vv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------~~s~~ 209 (297)
T PRK10122 159 ----RSQVLAKRMP-G----DLSEYS----VIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------LDSDL 209 (297)
T ss_pred ----CcEEEEEECC-C----CCCCce----EEEecCcccCCCCeeeEEEEEECCCCccc----------------CCccE
Confidence 3344444332 2 345787 777762 234 78899999852210 12467
Q ss_pred ccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh-hc
Q 007143 233 QDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI-IQ 303 (616)
Q Consensus 233 ~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di-l~ 303 (616)
+.+|+|||+|+++..+.+.... .....++.++++..+.+.++++|.++ ++|.+|+++++|..++.++ +.
T Consensus 210 ~~~GiYi~~~~i~~~l~~~~~~-~~~e~~ltd~i~~l~~~~~v~~~~~~-G~w~DiG~p~~~~~a~~~~~~~ 279 (297)
T PRK10122 210 MAVGRYVLSADIWPELERTEPG-AWGRIQLTDAIAELAKKQSVDAMLMT-GDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred EEEEEEEECHHHHHHHHhCCCC-CCCeeeHHHHHHHHHhCCCEEEEEeC-CEEEcCCCHHHHHHHHHHHHhc
Confidence 8999999999999988763211 11123444555555566789999997 8999999999999999987 44
No 36
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.96 E-value=3.5e-28 Score=245.43 Aligned_cols=232 Identities=18% Similarity=0.187 Sum_probs=174.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhc-CCCCCCCcEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENS-EWFSQPNFTVK 106 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~-~~~~~~~~~i~ 106 (616)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++ +.+++.+|+... .| ++++.
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~~~~----~~~i~ 76 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDGSDL----GIRIT 76 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhccccc----CceEE
Confidence 6899999999999999999999999999999999999999999999999998875 468899999763 34 46677
Q ss_pred EEeCCCccCHHHHHHHHHhcccccC-CEEEEeCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143 107 TIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~ 184 (616)
++.+.+..|++++++. ++.++.+ +|+|++||+ +.+.++.++++.|++. ++.+|+++.+.. ...+++
T Consensus 77 ~~~~~~~~G~~~al~~--a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~g 144 (240)
T cd02538 77 YAVQPKPGGLAQAFII--GEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQ-----KEGATVFGYEVN-----DPERYG 144 (240)
T ss_pred EeeCCCCCCHHHHHHH--HHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhc-----CCCcEEEEEECC-----chhcCc
Confidence 7766677899999985 4455654 599999997 5577899999999764 356677776654 334677
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhh
Q 007143 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKG 264 (616)
Q Consensus 185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~ 264 (616)
++.+|. .++|..+.+||.... .+++++|+|+++|++++++.+...... ....+.+
T Consensus 145 ----~v~~d~-~g~v~~~~ekp~~~~-------------------~~~~~~Giyi~~~~~l~~l~~~~~~~~-~~~~l~d 199 (240)
T cd02538 145 ----VVEFDE-NGRVLSIEEKPKKPK-------------------SNYAVTGLYFYDNDVFEIAKQLKPSAR-GELEITD 199 (240)
T ss_pred ----eEEecC-CCcEEEEEECCCCCC-------------------CCeEEEEEEEECHHHHHHHHhcCCCCC-CeEEhHH
Confidence 788874 579999999875321 346789999999999998853211000 0112223
Q ss_pred hhhccccCceEEEEEcc-ccchhhccChhhHHHHhhhh
Q 007143 265 LLLDDIMGYKIFTHEIH-SSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 265 ~l~~~i~g~~I~~~~~~-~~y~~~V~s~~sY~~a~~di 301 (616)
+++..+...++.++.++ .+||.+|+++++|..+++.+
T Consensus 200 ~~~~l~~~g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 200 VNNEYLEKGKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred HHHHHHHhCCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 33333333455555543 37999999999999998754
No 37
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.96 E-value=3.6e-28 Score=251.23 Aligned_cols=229 Identities=17% Similarity=0.232 Sum_probs=177.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhc-CCCCCCCcEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENS-EWFSQPNFTV 105 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~-~~~~~~~~~i 105 (616)
.|+|||||+|+||||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++.+ ..+++++|+.+. .| ++++
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g~~~----g~~i 78 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GLNL 78 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCcccc----Ccee
Confidence 48999999999999999999999999999999999999999999999999987764 478899999763 34 5778
Q ss_pred EEEeCCCccCHHHHHHHHHhcccccC-CEEEEeCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143 106 KTIESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (616)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~ 183 (616)
.++.+++..|+++|+.. ++.++.+ +|+|+.||. +++.+|.++++.|++++ +.+|+++.+.. ++.+|
T Consensus 79 ~y~~q~~~~Gta~Al~~--a~~~i~~~~~~lv~gD~i~~~~~l~~ll~~~~~~~-----~~~tv~~~~v~-----~p~~y 146 (292)
T PRK15480 79 QYKVQPSPDGLAQAFII--GEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVNKE-----SGATVFAYHVN-----DPERY 146 (292)
T ss_pred EEEECCCCCCHHHHHHH--HHHHhCCCCEEEEECCeeeeccCHHHHHHHHHhCC-----CCeEEEEEEcC-----CcccC
Confidence 88888888999999885 4556654 599999997 45889999999997642 45677665543 45688
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh----hhHHH
Q 007143 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY----QHLRR 259 (616)
Q Consensus 184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~----q~lr~ 259 (616)
| ++.+|. +++|..++|||..+ .+++..+|+|+++|++++.+..-... -.+ .
T Consensus 147 G----vv~~d~-~g~v~~i~EKP~~p-------------------~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~i-t 201 (292)
T PRK15480 147 G----VVEFDQ-NGTAISLEEKPLQP-------------------KSNYAVTGLYFYDNDVVEMAKNLKPSARGELEI-T 201 (292)
T ss_pred c----EEEECC-CCcEEEEEECCCCC-------------------CCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEh-H
Confidence 8 888884 67999999998532 24678899999999999987532110 011 2
Q ss_pred HhhhhhhhccccCceEE-EEEcccc-chhhccChhhHHHHhhhhh
Q 007143 260 HFVKGLLLDDIMGYKIF-THEIHSS-YAARIDNYRSYDIVSKDII 302 (616)
Q Consensus 260 dfv~~~l~~~i~g~~I~-~~~~~~~-y~~~V~s~~sY~~a~~dil 302 (616)
|.++.++ ..+++. .+... + +|.+++++++|.++++.+-
T Consensus 202 d~~~~~l----~~g~~~~~~~~~-g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 202 DINRIYM----EQGRLSVAMMGR-GYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HHHHHHH----hcCCeEEEEecC-CcEEECCCCHHHHHHHHHHHH
Confidence 3333333 333443 34444 6 5999999999999987764
No 38
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.96 E-value=5.2e-28 Score=246.29 Aligned_cols=227 Identities=15% Similarity=0.235 Sum_probs=175.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-----CCC-----
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFS----- 99 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-----~~~----- 99 (616)
+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++++..+++++|+.+.. |..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 5899999999999999999999999999999999999999999999999999999999999997521 100
Q ss_pred --------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143 100 --------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (616)
Q Consensus 100 --------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~ 170 (616)
.+...+.+..+.+..|+|++++. ++.++. ++||+++||++++.++.++++.|++. ++.+|++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~--~~~~i~~e~flv~~gD~i~~~dl~~~~~~h~~~-----~~d~tl~~~ 153 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKR--VREYLDDEAFCFTYGDGVADIDIKALIAFHRKH-----GKKATVTAV 153 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHH--HHHhcCCCeEEEEeCCeEecCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 00112334444456899999985 445666 56999999999999999999999875 366676654
Q ss_pred cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc
Q 007143 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD 250 (616)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d 250 (616)
+ ...++| ++.+| .++|..+.|+|... ++++++|||+++|++|+++.+
T Consensus 154 ~-------~~~~yG----~v~~d--~~~V~~~~Ekp~~~--------------------~~~i~~Giyi~~~~il~~l~~ 200 (254)
T TIGR02623 154 Q-------PPGRFG----ALDLE--GEQVTSFQEKPLGD--------------------GGWINGGFFVLNPSVLDLIDG 200 (254)
T ss_pred c-------CCCccc----EEEEC--CCeEEEEEeCCCCC--------------------CCeEEEEEEEEcHHHHhhccc
Confidence 3 234677 67777 35899999987421 246789999999999998865
Q ss_pred CCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143 251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (616)
Q Consensus 251 nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~ 303 (616)
... ++..|+++.++ ...++++|.++ +||.+|+++++|.++++.+-+
T Consensus 201 ~~~--~~~~d~i~~l~----~~~~v~~~~~~-g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 201 DAT--VWEQEPLETLA----QRGELSAYEHS-GFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred cCc--hhhhhHHHHHH----hCCCEEEEeCC-CEEecCCchHHHHHHHHHHHc
Confidence 321 22345555544 34579999997 899999999999998877654
No 39
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=9.8e-28 Score=239.00 Aligned_cols=219 Identities=20% Similarity=0.283 Sum_probs=172.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~ 109 (616)
+|||||+|.|+||+|+|..+||||+|++|+|||+|+|++|.++|+++|+|+++++.+++.+|+.+..| ++.+.++.
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~----~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSRF----GLRITISD 76 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcccC----CceEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999976334 46677766
Q ss_pred CC-CccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCc
Q 007143 110 SH-NIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE 187 (616)
Q Consensus 110 ~~-~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~ 187 (616)
+. +..|++++++.. +..+. ++||+++||++++.++.++++.|+++. .++.+|+...+.. +..+++
T Consensus 77 ~~~~~~g~~~~l~~~--~~~~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~g--- 143 (221)
T cd06422 77 EPDELLETGGGIKKA--LPLLGDEPFLVVNGDILWDGDLAPLLLLHAWRM---DALLLLLPLVRNP-----GHNGVG--- 143 (221)
T ss_pred CCCcccccHHHHHHH--HHhcCCCCEEEEeCCeeeCCCHHHHHHHHHhcc---CCCceEEEEEEcC-----CCCCcc---
Confidence 55 567899998854 44555 569999999999999999999998521 3567777665533 234555
Q ss_pred eEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhh
Q 007143 188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLL 267 (616)
Q Consensus 188 ~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~ 267 (616)
++.+|. .++|..+.++|. ..++.+|||+++|+++..+.+.. + .+ .|+++.+
T Consensus 144 -~v~~d~-~~~v~~~~~~~~----------------------~~~~~~Giyi~~~~~l~~l~~~~-~-~~-~d~~~~l-- 194 (221)
T cd06422 144 -DFSLDA-DGRLRRGGGGAV----------------------APFTFTGIQILSPELFAGIPPGK-F-SL-NPLWDRA-- 194 (221)
T ss_pred -eEEECC-CCcEeecccCCC----------------------CceEEEEEEEEcHHHHhhCCcCc-c-cH-HHHHHHH--
Confidence 677874 578888877753 14678999999999999776542 1 11 2444444
Q ss_pred ccccCceEEEEEccccchhhccChhhHHHH
Q 007143 268 DDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (616)
Q Consensus 268 ~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (616)
+...++++|..+ +||.+|+++++|.++
T Consensus 195 --~~~~~~~~~~~~-g~w~di~t~~~~~~a 221 (221)
T cd06422 195 --IAAGRLFGLVYD-GLWFDVGTPERLLAA 221 (221)
T ss_pred --HHcCCeEEEecC-CEEEcCCCHHHHhhC
Confidence 344578888875 899999999999764
No 40
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.96 E-value=1e-27 Score=245.96 Aligned_cols=238 Identities=15% Similarity=0.226 Sum_probs=179.7
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC---------
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------- 99 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~--------- 99 (616)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|.++|+++|+|++++..+++.+|+... |..
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRS-YELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCc-HHHHHHHHhccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999652 210
Q ss_pred ----------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecch---hHHHHHHHHHHhhccCCCceE
Q 007143 100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM 165 (616)
Q Consensus 100 ----------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~---~l~~~l~~h~~~~~~d~~a~m 165 (616)
..++.+.++.++..+|++++++.. +.++. ++|+|++||++... ++.++++.|++.. +.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~--~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~- 151 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCA--KPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTG-----AS- 151 (267)
T ss_pred HHHhhhhhcccCCceEEEEEcCCCCChHHHHHHH--HHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhC-----CC-
Confidence 014567777777789999999854 44565 45999999997654 5999999998642 22
Q ss_pred EEEEecCCCCCCCcccccCCCceEEEEeCC---CCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCH
Q 007143 166 TMIIKKSKPSPITHQSRLGTDELFMAIDPN---TKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP 242 (616)
Q Consensus 166 T~v~~~~~~~~~~~~~r~~~~~~vv~id~~---~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp 242 (616)
++++....+. ...+++ ++.+|.. .++|..+.|||..... .+.++.+|+|++++
T Consensus 152 ~~~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~ 207 (267)
T cd02541 152 VIAVEEVPPE---DVSKYG----IVKGEKIDGDVFKVKGLVEKPKPEEA-----------------PSNLAIVGRYVLTP 207 (267)
T ss_pred EEEEEEcChh---cCccce----EEEeecCCCCceEEeEEEECCCCCCC-----------------CCceEEEEEEEcCH
Confidence 3444443322 345677 7888852 3589999999752110 13567799999999
Q ss_pred hHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 243 ~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
+++..+.+... ..-...++..+++..+..+++++|.++ +||.+|+++++|.++++++
T Consensus 208 ~~~~~l~~~~~-~~~~e~~~~d~i~~l~~~~~v~~~~~~-g~w~digt~~~y~~a~~~~ 264 (267)
T cd02541 208 DIFDILENTKP-GKGGEIQLTDAIAKLLEEEPVYAYVFE-GKRYDCGNKLGYLKATVEF 264 (267)
T ss_pred HHHHHHHhCCC-CCCCcEEHHHHHHHHHhcCCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 99988754110 000122344455554445589999997 8999999999999999986
No 41
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.96 E-value=1.7e-27 Score=247.69 Aligned_cols=240 Identities=15% Similarity=0.168 Sum_probs=183.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCC------
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWF------ 98 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~------ 98 (616)
...|+|||+|+|.|+||+|+|..+||+|+|++|+|+|+|+|++|..+|+++|+|++++..+++.+|+... .|.
T Consensus 6 ~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred ccceEEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 3468999999999999999999999999999999999999999999999999999999999999999752 121
Q ss_pred ------------CCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecc--------hhHHHHHHHHHHhh
Q 007143 99 ------------SQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSN--------MLLTQALQEHKERK 157 (616)
Q Consensus 99 ------------~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~--------~~l~~~l~~h~~~~ 157 (616)
..++..+.++.+.+..|+|+|++.. +.++. ++|+|++||++++ .+|.++++.|++..
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a--~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~ 163 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCA--HPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETG 163 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHH--HHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcC
Confidence 0123456677777789999999864 34454 4599999999764 79999999997642
Q ss_pred ccCCCceEEEEEecCCCCCCCcccccCCCceEEEEeC------CCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEec
Q 007143 158 KKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDP------NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHND 231 (616)
Q Consensus 158 ~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~------~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~d 231 (616)
+. |+++.+.. ...+|| ++.+|. .+++|..+.|||..... .++
T Consensus 164 -----~~-tl~~~~~~-----~~~~yG----vv~~~~~~~~~~~~~~V~~~~EKp~~~~~-----------------~s~ 211 (302)
T PRK13389 164 -----HS-QIMVEPVA-----DVTAYG----VVDCKGVELAPGESVPMVGVVEKPKADVA-----------------PSN 211 (302)
T ss_pred -----CC-EEEEEEcc-----cCCcce----EEEecCcccccCCcceEEEEEECCCCCCC-----------------Ccc
Confidence 33 45555542 345777 777753 24589999999862111 135
Q ss_pred cccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 232 KQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 232 l~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
++.+|+|+++|++++++.....-. -...++.++++..+.+.++++|.++ +||.+|+++++|..++.++
T Consensus 212 ~~~~GiYi~~~~il~~l~~~~~~~-~~e~~l~d~i~~l~~~~~v~~~~~~-G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 212 LAIVGRYVLSADIWPLLAKTPPGA-GDEIQLTDAIDMLIEKETVEAYHMK-GKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEEEEEEEECHHHHHHHHhCCCCC-CCeeeHHHHHHHHHHcCCEEEEEee-eEEEeCCCHHHHHHHHHHH
Confidence 688999999999999886432110 0123445555554455689999987 8999999999999998885
No 42
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.96 E-value=1.3e-27 Score=246.66 Aligned_cols=231 Identities=18% Similarity=0.232 Sum_probs=176.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcC-CcHHHHHHHHHhc-CCCCCCCcEEEE
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCC-AHSKQVIDYLENS-EWFSQPNFTVKT 107 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~-~~~~~i~~~l~~~-~~~~~~~~~i~~ 107 (616)
+|||||+|.|+||+|+|..+||+|+||+|+|||+|+|+.|..+|+++|+|++. ++.+.+++++.+. .| ++++.+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g~~~----g~~i~~ 76 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDGSQW----GVNLSY 76 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcccccc----CceEEE
Confidence 58999999999999999999999999999999999999999999999998886 5578899999763 34 578888
Q ss_pred EeCCCccCHHHHHHHHHhcccccC-CEEEEeCce-ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 108 IESHNIISAGDALRLIYEQNVIHG-DFVLISGDT-VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
+.+++..|+++|+.. ++.++.+ +|+|+.||. +++.+|.+++++|.++ ++.+|++..+.. .+.+||
T Consensus 77 ~~q~~~~Gta~al~~--a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~-----~~~~ti~~~~v~-----~p~~yG- 143 (286)
T TIGR01207 77 AVQPSPDGLAQAFII--GEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAAR-----ESGATVFAYQVS-----DPERYG- 143 (286)
T ss_pred EEccCCCCHHHHHHH--HHHHhCCCCEEEEECCEeccccCHHHHHHHHHhc-----CCCcEEEEEEcc-----CHHHCc-
Confidence 888888999999985 4456664 599999997 5688999999999764 355677766654 345888
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhh
Q 007143 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGL 265 (616)
Q Consensus 186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~ 265 (616)
++.+|. .++|+.+.|||..+ .+++..+|+|++++++++++..-..-.. ..-.+.++
T Consensus 144 ---vv~~d~-~g~V~~i~EKp~~~-------------------~s~~~~~GiYi~~~~i~~~l~~~~~~~~-ge~eitdv 199 (286)
T TIGR01207 144 ---VVEFDS-NGRAISIEEKPAQP-------------------KSNYAVTGLYFYDNRVVEIARQLKPSAR-GELEITDL 199 (286)
T ss_pred ---eEEECC-CCeEEEEEECCCCC-------------------CCCEEEEEEEEEchHHHHHHhhcCCCCC-CcEeHHHH
Confidence 888884 68999999998522 1456789999999999988753211000 01122344
Q ss_pred hhccccCceEEEEEccccc-hhhccChhhHHHHhhhh
Q 007143 266 LLDDIMGYKIFTHEIHSSY-AARIDNYRSYDIVSKDI 301 (616)
Q Consensus 266 l~~~i~g~~I~~~~~~~~y-~~~V~s~~sY~~a~~di 301 (616)
++..+..+++.++.+..++ |.+++++++|.+++..+
T Consensus 200 ~~~~l~~g~l~v~~~~~g~~W~DiGt~~~l~~A~~~~ 236 (286)
T TIGR01207 200 NRVYLEEGRLSVELLGRGYAWLDTGTHDSLLEASNFI 236 (286)
T ss_pred HHHHHHcCCcEEEEecCCCEEEeCCCHHHHHHHHHHH
Confidence 4433333445555553465 99999999999998765
No 43
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.95 E-value=2.2e-27 Score=242.39 Aligned_cols=234 Identities=15% Similarity=0.213 Sum_probs=174.0
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCC---------
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFS--------- 99 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~--------- 99 (616)
|+|||||+|+|+||+|+|..+||+|+|++|+|||+|+|++|..+|+++|+|++++..+++.+|+... |..
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTS-YELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhccc-HHHHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999742 210
Q ss_pred ----------CCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecch---hHHHHHHHHHHhhccCCCceE
Q 007143 100 ----------QPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNM---LLTQALQEHKERKKKDNNAVM 165 (616)
Q Consensus 100 ----------~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~---~l~~~l~~h~~~~~~d~~a~m 165 (616)
.+++.+.++.+....|++++++.. +.++. ++|||++||++... ++.++++.|++.. +.+
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~--~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~-----~~i 152 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQKEQKGLGHAVLCA--EPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYG-----CSI 152 (260)
T ss_pred HHHHHHhhhccccceEEEEecCCCCCHHHHHHHH--HHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhC-----CCE
Confidence 012456666666778999999854 44554 45999999996643 7999999998753 333
Q ss_pred EEEEecCCCCCCCcccccCCCceEEEEeC---CCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCH
Q 007143 166 TMIIKKSKPSPITHQSRLGTDELFMAIDP---NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSP 242 (616)
Q Consensus 166 T~v~~~~~~~~~~~~~r~~~~~~vv~id~---~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp 242 (616)
+++...... ...++| ++.+|. ++++|..+.|||.+... .++++.+|+|+++|
T Consensus 153 -i~~~~~~~~---~~~~~g----~v~~d~~~~~~~~v~~~~Ekp~~~~~-----------------~~~~~~~Giyi~~~ 207 (260)
T TIGR01099 153 -IAVEEVPKE---EVSKYG----VIDGEGVEEGLYEIKDMVEKPKPEEA-----------------PSNLAIVGRYVLTP 207 (260)
T ss_pred -EEEEECChh---hcccCc----eEEeccccCCceeEEEEEECCCCCCC-----------------CCceEEEEEEECCH
Confidence 333333222 345777 777762 34799999999852211 13567899999999
Q ss_pred hHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHH
Q 007143 243 EVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (616)
Q Consensus 243 ~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (616)
+++..+.+...- .-...++.++++..+...++++|.++ +||.+|+++++|+++
T Consensus 208 ~~~~~l~~~~~~-~~~~~~l~d~i~~l~~~~~v~~~~~~-g~w~digs~~~y~~a 260 (260)
T TIGR01099 208 DIFDLLEETPPG-AGGEIQLTDALRKLLEKETVYAYKFK-GKRYDCGSKLGYLKA 260 (260)
T ss_pred HHHHHHHhCCCC-CCCceeHHHHHHHHHhcCCEEEEEcc-eEEEeCCCHHHHhhC
Confidence 999987542110 00122334445544455689999997 899999999999864
No 44
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.95 E-value=5.4e-27 Score=235.88 Aligned_cols=229 Identities=14% Similarity=0.283 Sum_probs=181.2
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCCCCcEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKT 107 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~~~~~i~~ 107 (616)
|+|||||+|.|+||+|+|...||+|+||+|+|||+|+|++|.++|+++|+|++++..+++++|+.+. +| ++++.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~~~----~~~i~~ 76 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGSRF----GVRITY 76 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchhhc----CCeEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999763 24 466777
Q ss_pred EeCCCccCHHHHHHHHHhccccc-CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCC
Q 007143 108 IESHNIISAGDALRLIYEQNVIH-GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTD 186 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~ 186 (616)
+.+...+|++++++.. +..+. ++||+++||++++.++.++++.|++.+ +.+|+++.+.. +..+++
T Consensus 77 ~~~~~~~g~~~sl~~a--~~~i~~~~~li~~~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~g-- 142 (236)
T cd04189 77 ILQEEPLGLAHAVLAA--RDFLGDEPFVVYLGDNLIQEGISPLVRDFLEED-----ADASILLAEVE-----DPRRFG-- 142 (236)
T ss_pred EECCCCCChHHHHHHH--HHhcCCCCEEEEECCeecCcCHHHHHHHHHhcC-----CceEEEEEECC-----Ccccce--
Confidence 7777778999999964 44565 669999999999999999999998653 56677776643 334565
Q ss_pred ceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCCh----hhHHHHhh
Q 007143 187 ELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDY----QHLRRHFV 262 (616)
Q Consensus 187 ~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~----q~lr~dfv 262 (616)
++.+| .++|..+.++|... .+++..+|||+++|+++..+...... -.+ .|++
T Consensus 143 --~~~~d--~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~-~d~~ 198 (236)
T cd04189 143 --VAVVD--DGRIVRLVEKPKEP-------------------PSNLALVGVYAFTPAIFDAISRLKPSWRGELEI-TDAI 198 (236)
T ss_pred --EEEEc--CCeEEEEEECCCCC-------------------CCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEH-HHHH
Confidence 66676 35899998886421 13457899999999999877431110 011 2444
Q ss_pred hhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143 263 KGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (616)
Q Consensus 263 ~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~ 303 (616)
+.++. .|.+|+++.++ +||.+|+++++|..+++.+++
T Consensus 199 ~~~i~---~g~~v~~~~~~-~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 199 QWLID---RGRRVGYSIVT-GWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred HHHHH---cCCcEEEEEcC-ceEEeCCCHHHHHHHHHHHHh
Confidence 44432 46679999987 899999999999999998875
No 45
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.95 E-value=9.7e-27 Score=236.85 Aligned_cols=225 Identities=15% Similarity=0.211 Sum_probs=172.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-----CCCC-----
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-----WFSQ----- 100 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-----~~~~----- 100 (616)
|||||||+|+||+|+|..+||||+||+|+|||+|+++.+..+|+++|+|++++..+++++|+.+.. |...
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTNR 80 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecccc
Confidence 699999999999999999999999999999999999999999999999999999999999997632 1100
Q ss_pred --------CCcEEEEEeCCCccCHHHHHHHHHhccccc--CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143 101 --------PNFTVKTIESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (616)
Q Consensus 101 --------~~~~i~~i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~ 170 (616)
.++.++++......++|++++. ++..+. ++|||++||++++.++..+++.|+.. ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~t~~al~~--a~~~~~~~~~~lv~~gD~i~~~dl~~ll~~h~~~-----~~~~tl~~~ 153 (253)
T cd02524 81 IELHNSDIEDWKVTLVDTGLNTMTGGRLKR--VRRYLGDDETFMLTYGDGVSDVNINALIEFHRSH-----GKLATVTAV 153 (253)
T ss_pred eeeecccccccceeecccCcccccHHHHHH--HHHhcCCCCeEEEEcCCEEECCCHHHHHHHHHHc-----CCCEEEEEe
Confidence 0112222222334678988885 445565 45999999999999999999999764 467787765
Q ss_pred cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc
Q 007143 171 KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD 250 (616)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d 250 (616)
.. ..+++ ++.+|. +++|..+.++|... +.++.+|||+++|+++..+..
T Consensus 154 ~~-------~~~~g----~v~~d~-~g~V~~~~ekp~~~--------------------~~~i~~Giyi~~~~l~~~l~~ 201 (253)
T cd02524 154 HP-------PGRFG----ELDLDD-DGQVTSFTEKPQGD--------------------GGWINGGFFVLEPEVFDYIDG 201 (253)
T ss_pred cC-------CCccc----EEEECC-CCCEEEEEECCCCC--------------------CceEEEEEEEECHHHHHhhcc
Confidence 31 23556 677875 58999999987521 135678999999999988765
Q ss_pred CCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 251 NFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 251 nfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
. +.++..++++..+...++++|.++ +||.+|+++.+|..+...+
T Consensus 202 ~------~~~~~~d~l~~li~~~~v~~~~~~-g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 202 D------DTVFEREPLERLAKDGELMAYKHT-GFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred c------cchhhHHHHHHHHhcCCEEEEecC-CEEEeCcCHHHHHHHHHHH
Confidence 3 123333444444445589999987 7999999999999998554
No 46
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.95 E-value=2.2e-26 Score=227.82 Aligned_cols=215 Identities=22% Similarity=0.424 Sum_probs=173.9
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-CCCCCCcEEEEEe
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE 109 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~~~~~i~~i~ 109 (616)
|||||+|.|+||+|+|...||+|+|++|+|||+|+++.|..+|+++|+|+++++.+++++|+.+.. | ++.+.++.
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~----~~~i~~~~ 76 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGSKF----GVNIEYVV 76 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChhhc----CceEEEEe
Confidence 699999999999999999999999999999999999999999999999999998899999987632 3 35677777
Q ss_pred CCCccCHHHHHHHHHhcccc-cCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCce
Q 007143 110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (616)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i-~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~ 188 (616)
+....|++++++.. +..+ .++|++++||++++.++.++++.|++. ++.+|+++.+.. +..+++
T Consensus 77 ~~~~~g~~~al~~~--~~~~~~~~~lv~~~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~---- 140 (217)
T cd04181 77 QEEPLGTAGAVRNA--EDFLGDDDFLVVNGDVLTDLDLSELLRFHREK-----GADATIAVKEVE-----DPSRYG---- 140 (217)
T ss_pred CCCCCccHHHHHHh--hhhcCCCCEEEEECCeecCcCHHHHHHHHHhc-----CCCEEEEEEEcC-----CCCcce----
Confidence 76678999999864 3445 456999999999999999999988864 467788877654 234565
Q ss_pred EEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhc
Q 007143 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268 (616)
Q Consensus 189 vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~ 268 (616)
++.+|. .++|..+.++|.... .++..+|+|++++++++++.+.+. -..+++..+++.
T Consensus 141 ~v~~d~-~~~v~~~~ek~~~~~-------------------~~~~~~Giy~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 197 (217)
T cd04181 141 VVELDD-DGRVTRFVEKPTLPE-------------------SNLANAGIYIFEPEILDYIPEILP---RGEDELTDAIPL 197 (217)
T ss_pred EEEEcC-CCcEEEEEECCCCCC-------------------CCEEEEEEEEECHHHHHhhhhcCC---cccccHHHHHHH
Confidence 777875 589999999875321 356789999999999998877643 123556666666
Q ss_pred cccCceEEEEEccccchhhcc
Q 007143 269 DIMGYKIFTHEIHSSYAARID 289 (616)
Q Consensus 269 ~i~g~~I~~~~~~~~y~~~V~ 289 (616)
.+...++++|.++ +||.+|+
T Consensus 198 l~~~~~v~~~~~~-g~w~dig 217 (217)
T cd04181 198 LIEEGKVYGYPVD-GYWLDIG 217 (217)
T ss_pred HHhcCCEEEEEcC-CEEecCC
Confidence 5555789999998 8999875
No 47
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.95 E-value=4.2e-26 Score=226.83 Aligned_cols=219 Identities=21% Similarity=0.367 Sum_probs=174.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCCCCcEEEEEe
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQPNFTVKTIE 109 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~~~~~i~~i~ 109 (616)
|||||+|+|+||+|+|...||+|+|++|+|||+|+|++|..+|+++|+|+++++.+++++|+.+. .| ++++.++.
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~~~~----~~~i~~~~ 76 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDGSKF----GVNISYVR 76 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCcccc----CccEEEEE
Confidence 69999999999999999999999999999999999999999999999999999999999998763 24 35677776
Q ss_pred CCCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCceE
Q 007143 110 SHNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELF 189 (616)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~v 189 (616)
+....|++++++.+. ..+.++|+|++||++.+.++..+++.|++. ++.+|+++.+..+ ...++ +
T Consensus 77 ~~~~~g~~~~l~~~~--~~~~~~~lv~~~D~i~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~-----~~~~g----~ 140 (220)
T cd06426 77 EDKPLGTAGALSLLP--EKPTDPFLVMNGDILTNLNYEHLLDFHKEN-----NADATVCVREYEV-----QVPYG----V 140 (220)
T ss_pred CCCCCcchHHHHHHH--hhCCCCEEEEcCCEeeccCHHHHHHHHHhc-----CCCEEEEEEEcCC-----CCcce----E
Confidence 666789999998643 334567999999999999999999999864 4667777765432 12355 6
Q ss_pred EEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhcc
Q 007143 190 MAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDD 269 (616)
Q Consensus 190 v~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~~ 269 (616)
+.+|. ++|..+.++|.. +.++.+|+|+++|.++..+.++-.| .+ .++++.++.
T Consensus 141 ~~~d~--~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~i~~~~~~-~l-~~~~~~~i~-- 193 (220)
T cd06426 141 VETEG--GRITSIEEKPTH---------------------SFLVNAGIYVLEPEVLDLIPKNEFF-DM-PDLIEKLIK-- 193 (220)
T ss_pred EEECC--CEEEEEEECCCC---------------------CCeEEEEEEEEcHHHHhhcCCCCCc-CH-HHHHHHHHH--
Confidence 66763 899999988642 2356799999999999988765322 22 255555543
Q ss_pred ccCceEEEEEccccchhhccChhhHHHHh
Q 007143 270 IMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (616)
Q Consensus 270 i~g~~I~~~~~~~~y~~~V~s~~sY~~a~ 298 (616)
.+.+|++|.++ ++|.+|+++.+|.+++
T Consensus 194 -~~~~i~~~~~~-~~w~~igt~~dl~~a~ 220 (220)
T cd06426 194 -EGKKVGVFPIH-EYWLDIGRPEDYEKAN 220 (220)
T ss_pred -CCCcEEEEEeC-CeEEeCCCHHHHHhhC
Confidence 45679999998 8999999999998874
No 48
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.94 E-value=8.6e-26 Score=224.38 Aligned_cols=220 Identities=18% Similarity=0.342 Sum_probs=172.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC-CCCCCCcEEEEEe
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE-WFSQPNFTVKTIE 109 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~-~~~~~~~~i~~i~ 109 (616)
|||||+|.|+||+|+|...||+|+|++|+|||+|++++|.++|+++|+|+++++.+.+++|+.... | ++.+.+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~~~----~~~~~~~~ 76 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGYRG----GIRIYYVI 76 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcccc----CceEEEEE
Confidence 699999999999999999999999999999999999999999999999999998899999997533 3 34566666
Q ss_pred CCCccCHHHHHHHHHhcccc-cCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCce
Q 007143 110 SHNIISAGDALRLIYEQNVI-HGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (616)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i-~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~ 188 (616)
.....|+++++... +..+ .++|++++||++.+.++.++++.|++. ++.+++++.+.. ...+++
T Consensus 77 ~~~~~G~~~~l~~a--~~~~~~~~~lv~~~D~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~-----~~~~~~---- 140 (223)
T cd06915 77 EPEPLGTGGAIKNA--LPKLPEDQFLVLNGDTYFDVDLLALLAALRAS-----GADATMALRRVP-----DASRYG---- 140 (223)
T ss_pred CCCCCcchHHHHHH--HhhcCCCCEEEEECCcccCCCHHHHHHHHHhC-----CCcEEEEEEECC-----CCCcce----
Confidence 66678999888854 3445 456999999999999999999999763 356666666643 223555
Q ss_pred EEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhhhhhhc
Q 007143 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLD 268 (616)
Q Consensus 189 vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~~~l~~ 268 (616)
++.+|. +++|+.+.++|... ++.+..+|||+++|+++..+.+. .+. ...++++.++
T Consensus 141 ~v~~d~-~~~v~~~~ek~~~~-------------------~~~~~~~Giy~~~~~~l~~~~~~-~~~-~~~~~~~~l~-- 196 (223)
T cd06915 141 NVTVDG-DGRVIAFVEKGPGA-------------------APGLINGGVYLLRKEILAEIPAD-AFS-LEADVLPALV-- 196 (223)
T ss_pred eEEECC-CCeEEEEEeCCCCC-------------------CCCcEEEEEEEECHHHHhhCCcc-CCC-hHHHHHHHHH--
Confidence 667775 58999999876421 24677899999999999887643 121 1235554443
Q ss_pred cccCceEEEEEccccchhhccChhhHHHH
Q 007143 269 DIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (616)
Q Consensus 269 ~i~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (616)
...++++|+++ ++|.+|+++.+|..+
T Consensus 197 --~~~~v~~~~~~-~~~~dI~t~~dl~~a 222 (223)
T cd06915 197 --KRGRLYGFEVD-GYFIDIGIPEDYARA 222 (223)
T ss_pred --hcCcEEEEecC-CeEEecCCHHHHHhh
Confidence 33489999998 899999999999876
No 49
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.4e-24 Score=213.63 Aligned_cols=243 Identities=15% Similarity=0.221 Sum_probs=191.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcC----------
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSE---------- 96 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~---------- 96 (616)
+..+|||.|||+||||.|.|...||-||||.++|+|+|+++.+..+|+++|++|++.+...|++|++.+.
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~ 82 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKRG 82 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhC
Confidence 4579999999999999999999999999999999999999999999999999999999889999986631
Q ss_pred C--------CCCCCcEEEEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCceecc---hhHHHHHHHHHHhhccCCCce
Q 007143 97 W--------FSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDTVSN---MLLTQALQEHKERKKKDNNAV 164 (616)
Q Consensus 97 ~--------~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~i~~---~~l~~~l~~h~~~~~~d~~a~ 164 (616)
. ......++.++.+.+..|+|+|+.. ++.+++++ |.|+.+|.+.. ..+..+++.+.+.+ ..
T Consensus 83 K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~--A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g----~s- 155 (291)
T COG1210 83 KRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLC--AKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETG----GS- 155 (291)
T ss_pred HHHHHHHHHhcccCceEEEEecCCCCcchhHHHh--hhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhC----Cc-
Confidence 0 0013568999999999999999995 78889876 99999999665 36888888887753 22
Q ss_pred EEEEEecCCCCCCCcccccCCCceEEE----EeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEee
Q 007143 165 MTMIIKKSKPSPITHQSRLGTDELFMA----IDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDIC 240 (616)
Q Consensus 165 mT~v~~~~~~~~~~~~~r~~~~~~vv~----id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIc 240 (616)
.+.+.++.+. ...+|| ++. ++....+|..+.|||.+.+. .++|.-.|-||+
T Consensus 156 -vi~v~ev~~e---~v~kYG----vi~~g~~~~~~~~~v~~~VEKP~~~~A-----------------PSnlai~GRYil 210 (291)
T COG1210 156 -VIGVEEVPPE---DVSKYG----VIDPGEPVEKGVYKVKGMVEKPKPEEA-----------------PSNLAIVGRYVL 210 (291)
T ss_pred -EEEEEECCHH---HCcccc----eEecCccccCCeEEEEEEEECCCCCCC-----------------Ccceeeeeeeec
Confidence 3455666554 667888 665 44434689999999974321 467888899999
Q ss_pred CHhHHhhhhcCCChhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhc
Q 007143 241 SPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQ 303 (616)
Q Consensus 241 sp~vl~lf~dnfd~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~ 303 (616)
+|++|+++...-. -...+--+.+.+...+....+++|.+. +-.+|+++...|..++.++..
T Consensus 211 ~p~IFd~L~~~~~-G~ggEiQLTDai~~L~~~~~v~a~~~~-GkryD~G~k~Gyi~a~v~~~l 271 (291)
T COG1210 211 TPEIFDILEETKP-GAGGEIQLTDAIKKLLKKEPVLAYVFE-GKRYDCGSKLGYIKANVEFAL 271 (291)
T ss_pred CHHHHHHHhhCCC-CCCCEeeHHHHHHHHHhhCcEEEEEec-ccEEccCCcccHHHHHHHHHh
Confidence 9999999986321 111112344455555566899999997 888899999999999888754
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.90 E-value=1.5e-23 Score=205.89 Aligned_cols=186 Identities=25% Similarity=0.335 Sum_probs=139.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhc-CCCCC---CCcEE
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENS-EWFSQ---PNFTV 105 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~-~~~~~---~~~~i 105 (616)
|||||+|+|+||+|+|...||+|+||+|+ |||+|+|++|..+|+++|+|+++++.+++.+|+.+. .|... .++.+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLFI 80 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEEE
Confidence 69999999999999999999999999998 999999999999999999999999999999999763 34221 12223
Q ss_pred EEEe----CCCccCHHHHHHHHHhccccc----CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143 106 KTIE----SHNIISAGDALRLIYEQNVIH----GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (616)
Q Consensus 106 ~~i~----~~~~~~~gdalr~~~~~~~i~----~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~ 177 (616)
.... ++...|+|++++... ..+. ++|||++||++++.++.++++.|+++ ++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~Gta~al~~a~--~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~-----~~~~t~~~~------- 146 (200)
T cd02508 81 LPPQQRKGGDWYRGTADAIYQNL--DYIERSDPEYVLILSGDHIYNMDYREMLDFHIES-----GADITVVYK------- 146 (200)
T ss_pred eCcccCCCCCcccCcHHHHHHHH--HHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHc-----CCCEEEEEh-------
Confidence 2211 245689999998643 4453 35999999999999999999999874 355555332
Q ss_pred CcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHh-hhhcCCChhh
Q 007143 178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLS-LFTDNFDYQH 256 (616)
Q Consensus 178 ~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~-lf~dnfd~q~ 256 (616)
+++|+|+++++++. ++... ...
T Consensus 147 -------------------------------------------------------~~~g~yi~~~~~~~~~l~~~-~~~- 169 (200)
T cd02508 147 -------------------------------------------------------ASMGIYIFSKDLLIELLEED-AAD- 169 (200)
T ss_pred -------------------------------------------------------hcCEEEEEEHHHHHHHHHHH-hcc-
Confidence 46789999998874 44431 000
Q ss_pred HHHHhhhhhhhccccCceEEEEEccccchhhc
Q 007143 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAARI 288 (616)
Q Consensus 257 lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V 288 (616)
-..+++.++++..+...++++|.++ +||.+|
T Consensus 170 ~~~~~~~d~i~~l~~~~~v~~~~~~-g~w~di 200 (200)
T cd02508 170 GSHDFGKDIIPAMLKKLKIYAYEFN-GYWADI 200 (200)
T ss_pred CcchhHHHHHHHHhccCcEEEEEeC-CeEecC
Confidence 0224444555554445789999987 899875
No 51
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.90 E-value=3.7e-23 Score=207.13 Aligned_cols=223 Identities=20% Similarity=0.289 Sum_probs=156.2
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~ 110 (616)
|||||+|.|+||+|+|..+||+|+|++|+|||+|+|+.|..+|+++|+|++++..+++.+|+... ..+.++.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~-------~~~~~~~~ 73 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY-------PNIKFVYN 73 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc-------CCeEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999999998652 12445544
Q ss_pred CC--ccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCce
Q 007143 111 HN--IISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDEL 188 (616)
Q Consensus 111 ~~--~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~ 188 (616)
+. ..|+++++... +.++.++||+++||++++. ++++.|.++ ++.+|+++.+.... ...++
T Consensus 74 ~~~~~~g~~~s~~~~--~~~~~~~~lv~~~D~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~~----- 135 (229)
T cd02523 74 PDYAETNNIYSLYLA--RDFLDEDFLLLEGDVVFDP---SILERLLSS-----PADNAILVDKKTKE---WEDEY----- 135 (229)
T ss_pred cchhhhCcHHHHHHH--HHHcCCCEEEEeCCEecCH---HHHHHHHcC-----CCCCeEEEccCccc---ccccc-----
Confidence 43 46788888754 4455667999999998866 466677754 35667777763221 11122
Q ss_pred EEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCC-h-hh-HHHHhhhhh
Q 007143 189 FMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFD-Y-QH-LRRHFVKGL 265 (616)
Q Consensus 189 vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd-~-q~-lr~dfv~~~ 265 (616)
.+..+ ..+++..+.++|.... ...+..+|||+++|+++..+.+... + +. ...+++..+
T Consensus 136 ~~~~~-~~~~v~~~~~k~~~~~------------------~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 196 (229)
T cd02523 136 VKDLD-DAGVLLGIISKAKNLE------------------EIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDA 196 (229)
T ss_pred eeeec-CccceEeecccCCCcc------------------hhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 22222 1267778888764221 1346788999999999887654211 0 00 122445555
Q ss_pred hhccccCceEEEEEccccchhhccChhhHHHH
Q 007143 266 LLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (616)
Q Consensus 266 l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (616)
++..+...++.++.+..+||.+|+++++|..+
T Consensus 197 i~~l~~~~~~~v~~~~~~~w~dI~~~ed~~~a 228 (229)
T cd02523 197 LQRLISEEGVKVKDISDGFWYEIDDLEDLERA 228 (229)
T ss_pred HHHHHhhcCeeEEEcCCCCEEEeCCHHHHHhh
Confidence 55544323444444444799999999999876
No 52
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.87 E-value=2.2e-21 Score=194.45 Aligned_cols=218 Identities=15% Similarity=0.187 Sum_probs=150.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcH---HHHHHHHHhcCCCCCCCcEEEE
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHS---KQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~---~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
+||||||+|+||+|+|..+||||+|++|+|||+|+|+.|..+|+++++|++++.. +.+..++.... .++.+.+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~----~~~~i~~ 76 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLA----PNATVVE 76 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhC----CCCEEEE
Confidence 4899999999999999999999999999999999999999999999999886421 23333333211 1345543
Q ss_pred EeCCCccCHHHHHHHHHhccccc--CCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 108 IESHNIISAGDALRLIYEQNVIH--GDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~--~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
. +....|+++++... +..+. ++||+++||++++.++.+++.+|.++. ...++++.... ..+++
T Consensus 77 ~-~~~~~g~~~~l~~a--~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~~------~~~~~- 141 (231)
T cd04183 77 L-DGETLGAACTVLLA--ADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERD-----LDGGVLTFFSS------HPRWS- 141 (231)
T ss_pred e-CCCCCcHHHHHHHH--HhhcCCCCCEEEEecceeeccCHHHHHHHhhccC-----CceEEEEEeCC------CCCeE-
Confidence 3 44578899888854 44553 459999999999999999999886542 33333333221 12455
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHh-HH-hhhhc----CCChhhHHH
Q 007143 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPE-VL-SLFTD----NFDYQHLRR 259 (616)
Q Consensus 186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~-vl-~lf~d----nfd~q~lr~ 259 (616)
++.+|. .++|..+.+++.. +.+..+|+|+++++ ++ .++.+ ... .. ..
T Consensus 142 ---~v~~d~-~~~v~~~~ek~~~---------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~-~~-~~ 194 (231)
T cd04183 142 ---YVKLDE-NGRVIETAEKEPI---------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDS-VN-GE 194 (231)
T ss_pred ---EEEECC-CCCEEEeEEcCCC---------------------CCccEeEEEEECcHHHHHHHHHHHHhhccc-cc-Cc
Confidence 677774 6788888776321 24577899999997 33 33332 110 00 11
Q ss_pred Hhhhhhhhccc-cCceEEEEEccccchhhccChhhH
Q 007143 260 HFVKGLLLDDI-MGYKIFTHEIHSSYAARIDNYRSY 294 (616)
Q Consensus 260 dfv~~~l~~~i-~g~~I~~~~~~~~y~~~V~s~~sY 294 (616)
.++..+++..+ .|.+++++.+++++|.+|+++++|
T Consensus 195 ~~~~d~i~~~~~~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 195 FYISPLYNELILDGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEhHHHHHHHHcCCEEEEEEeccccEEEcCChHhc
Confidence 22344555444 456899999865899999999876
No 53
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.86 E-value=2.2e-21 Score=199.60 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=138.6
Q ss_pred eEEEEEeCCCCCCCCCCCC-CCCcccceeCC-eehHHHHHHHHHHC-CCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCcE
Q 007143 29 LQAILLADSFTTKFRPITL-ERPKVLLPLVN-VPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT 104 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~-~~PK~Llpi~g-~PlI~y~Le~L~~~-Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~ 104 (616)
|++||||+|.|+||+|+|. .+||+|+|++| +|||+|+++.|... ++++|+|++++ +.+.+++++.. + ...
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~--~----~~~ 74 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE--G----LPE 74 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh--c----CCC
Confidence 6899999999999999996 79999999999 99999999999998 59999999986 45677777754 1 123
Q ss_pred EEEEeCCCccCHHHHHHHHHhccccc----CC-EEEEeCceecc--hhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143 105 VKTIESHNIISAGDALRLIYEQNVIH----GD-FVLISGDTVSN--MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (616)
Q Consensus 105 i~~i~~~~~~~~gdalr~~~~~~~i~----~d-fLlv~gD~i~~--~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~ 177 (616)
+.++.++..+|+++|+..... .+. ++ +||++||++.. .+|.+++++|.+..+ +++++|+.+++..|
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~--~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~--~~~~vt~gi~p~~~--- 147 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAAL--YLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAE--EGYLVTFGIKPTRP--- 147 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHH--HHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHH--cCCEEEEEeeecCC---
Confidence 566777778999999886432 222 23 89999999765 678888887765332 46789998887653
Q ss_pred CcccccCCCceEEEEeCCC-C---eEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143 178 THQSRLGTDELFMAIDPNT-K---QLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (616)
Q Consensus 178 ~~~~r~~~~~~vv~id~~~-~---rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl 245 (616)
.++|| ++..+... + +|..|.|||+..... ..+.. ...+.++|||+++++++
T Consensus 148 --~t~yG----yI~~~~~~~~~~~~V~~f~EKP~~~~a~-----~~~~~------g~~~wNsGiyi~~~~~l 202 (274)
T cd02509 148 --ETGYG----YIEAGEKLGGGVYRVKRFVEKPDLETAK-----EYLES------GNYLWNSGIFLFRAKTF 202 (274)
T ss_pred --CCCeE----EEEeCCcCCCCceEEeEEEECcChHHHH-----HHhhc------CCeEEECceeeeeHHHH
Confidence 35787 88887532 2 899999998632110 01110 13467899999995544
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.82 E-value=4.9e-19 Score=176.97 Aligned_cols=218 Identities=19% Similarity=0.279 Sum_probs=151.1
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~ 110 (616)
|||||+|+|+||++ ..||+|+|++|+|||+|+|+.|..+|+.+|+|++++..+++.+++.. +.+.++.+
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~--------~~~~~~~~ 69 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN--------PNVEFVLQ 69 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC--------CCcEEEEC
Confidence 69999999999996 68999999999999999999999999999999999888889888864 23555666
Q ss_pred CCccCHHHHHHHHHhccccc---CCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCC
Q 007143 111 HNIISAGDALRLIYEQNVIH---GDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGT 185 (616)
Q Consensus 111 ~~~~~~gdalr~~~~~~~i~---~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~ 185 (616)
+...|++++++... ..+. +.|+++.||+ +...++..+++.|++. ++..++.+.+.. ++.+++
T Consensus 70 ~~~~g~~~ai~~a~--~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~~-----~p~~~~- 136 (229)
T cd02540 70 EEQLGTGHAVKQAL--PALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA-----GADVTVLTAELE-----DPTGYG- 136 (229)
T ss_pred CCCCCCHHHHHHHH--HhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc-----CCcEEEEEEEcC-----CCCCcc-
Confidence 66789999988643 3443 3499999998 5677999999988763 244444444432 334555
Q ss_pred CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHH-hhhhcCCChhhHHHHhhhh
Q 007143 186 DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL-SLFTDNFDYQHLRRHFVKG 264 (616)
Q Consensus 186 ~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl-~lf~dnfd~q~lr~dfv~~ 264 (616)
.+..+. +++|..+.++|...... + ...++.+|+|++++..+ .++........-...++..
T Consensus 137 ---~~~~~~-~~~v~~~~ek~~~~~~~-----------~----~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d 197 (229)
T cd02540 137 ---RIIRDG-NGKVLRIVEEKDATEEE-----------K----AIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTD 197 (229)
T ss_pred ---EEEEcC-CCCEEEEEECCCCChHH-----------H----hhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHH
Confidence 555553 57898998876421000 0 12467899999998755 4454311000001233455
Q ss_pred hhhccc-cCceEEEEEccccchh--hccChh
Q 007143 265 LLLDDI-MGYKIFTHEIHSSYAA--RIDNYR 292 (616)
Q Consensus 265 ~l~~~i-~g~~I~~~~~~~~y~~--~V~s~~ 292 (616)
+++..+ .|.+++++..+ +||. .|+++.
T Consensus 198 ~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~~ 227 (229)
T cd02540 198 IIALAVADGLKVAAVLAD-DEEEVLGVNDRV 227 (229)
T ss_pred HHHHHHHCCCEEEEEEcC-CcceEecCCChH
Confidence 555444 46789999886 6654 455543
No 55
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.81 E-value=3.1e-19 Score=196.54 Aligned_cols=238 Identities=14% Similarity=0.164 Sum_probs=160.9
Q ss_pred eEEEEEeCCCCCCCCCCCCC-CCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcE-
Q 007143 29 LQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFT- 104 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~-~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~- 104 (616)
|.+||||+|.|+||+|+|.. +||+|+|++| +|||+|+++.|...|+++++|+++.. ...+++.+... +++
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~~------~~~~ 74 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLREI------GKLA 74 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHHc------CCCc
Confidence 57999999999999999996 8999999977 89999999999999999999988753 34566666542 122
Q ss_pred EEEEeCCCccCHHHHHHHHHhcccc----c-CC-EEEEeCcee-cc-hhHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143 105 VKTIESHNIISAGDALRLIYEQNVI----H-GD-FVLISGDTV-SN-MLLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (616)
Q Consensus 105 i~~i~~~~~~~~gdalr~~~~~~~i----~-~d-fLlv~gD~i-~~-~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~ 176 (616)
..++.++..+|||.|+.... .++ . ++ |||++||++ .+ ..|.++++++.+..+ +++++|+.+++..|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa--~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~--~~~lvtlgi~p~~p-- 148 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAA--LLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAA--EGKLVTFGIVPTHP-- 148 (468)
T ss_pred ceEEecccccCchHHHHHHH--HHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHh--cCCEEEEEecCCCC--
Confidence 34677788899999987532 222 2 34 899999974 44 468999988764322 25688888876543
Q ss_pred CCcccccCCCceEEEEeC-----CCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeC----------
Q 007143 177 ITHQSRLGTDELFMAIDP-----NTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICS---------- 241 (616)
Q Consensus 177 ~~~~~r~~~~~~vv~id~-----~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcs---------- 241 (616)
.++|| ++..++ ..++|..|.|||+.... ...+. -.+.+.++|||+++
T Consensus 149 ---~t~YG----yI~~~~~~~~~~~~~V~~f~EKP~~~~a-----~~~l~------~g~~~wNsGif~~~~~~ll~~l~~ 210 (468)
T TIGR01479 149 ---ETGYG----YIRRGEPLAGEDVYQVQRFVEKPDLATA-----QAYLE------SGDYYWNSGMFLFRASRYLAELKK 210 (468)
T ss_pred ---CCCce----EEEeCCccCCCCceEEeEEEECCChHHH-----HHHHh------cCCeEEEeeEEEEEHHHHHHHHHH
Confidence 35788 888774 23689999999863211 01111 11347789999999
Q ss_pred --HhHHhhhhcC---CCh----hhHHHHhhhhhh----hc--cccCceEEEEEccccchhhccChhhHHHH
Q 007143 242 --PEVLSLFTDN---FDY----QHLRRHFVKGLL----LD--DIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (616)
Q Consensus 242 --p~vl~lf~dn---fd~----q~lr~dfv~~~l----~~--~i~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (616)
|+++..+..- +.. ..+..+..+.+- .. +.+..++++...+ .+|.|+++|.++..+
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~-~~W~DvGsw~~l~~~ 280 (468)
T TIGR01479 211 HAPDIYEACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMD-AGWSDVGSWSALWEI 280 (468)
T ss_pred HCHHHHHHHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCC-CCccccCCHHHHHHh
Confidence 6555554321 100 001011111000 00 2245568887775 789999999998875
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.80 E-value=6.6e-18 Score=170.92 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=155.2
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.+-+||||+|.++||. ||+|+|++|+|||+|+++.|..+|+++|+|++++ +.+.+++... ++++.+
T Consensus 2 ~~~~iIlA~g~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~~~------~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARYASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATDD--ERIADAVEAF------GGEVVM 67 (245)
T ss_pred ceEEEEecCCCCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHHHc------CCEEEE
Confidence 4789999999999994 7999999999999999999999999999988753 6677777541 245544
Q ss_pred EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccC
Q 007143 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLG 184 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~ 184 (616)
..+....|++.+...+........+ ||++.||+ +....|..+++.|+.+. ....++++....+........++
T Consensus 68 ~~~~~~~gt~~~~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 143 (245)
T PRK05450 68 TSPDHPSGTDRIAEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPE----ADMATLAVPIHDAEEAFNPNVVK 143 (245)
T ss_pred CCCcCCCchHHHHHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCC----CCeEeeeeecCCHHHhcCcCCCE
Confidence 4445556777665544332222345 88899998 55678999999887532 23334433331211000112222
Q ss_pred CCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCC--ChhhH-HHHh
Q 007143 185 TDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHL-RRHF 261 (616)
Q Consensus 185 ~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf--d~q~l-r~df 261 (616)
+.+| +.++|++|.++|.+..... ... -.-.+++..+|||+++++++..+.+.. .+... ..++
T Consensus 144 -----v~~d-~~g~v~~~~e~~~~~~~~~------~~~---~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~ 208 (245)
T PRK05450 144 -----VVLD-ADGRALYFSRAPIPYGRDA------FAD---SAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQ 208 (245)
T ss_pred -----EEeC-CCCcEEEecCCCCCCCCCc------ccc---ccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHH
Confidence 3477 4789999999885321100 000 001247889999999999999876421 11111 1112
Q ss_pred hhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 262 VKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 262 v~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
++ ++ ..|.+++++.+++.+|.+|+++++|..+++.+
T Consensus 209 ~~-~~---~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 209 LR-AL---ENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred HH-HH---HCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 22 22 26778999988745999999999999998653
No 57
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.1e-18 Score=166.20 Aligned_cols=222 Identities=19% Similarity=0.303 Sum_probs=147.6
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEc-CCcHHHHHHHHHhcCCCCCCCcEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFC-CAHSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~-~~~~~~i~~~l~~~~~~~~~~~~i 105 (616)
++|+|||||||+|+||+| ++||||+.++|+|||+|+|++|+++|+++++||+ ++..+.++.++.+.. ++.
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~~------~~~ 72 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKYP------FNA 72 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcCC------cce
Confidence 468999999999999999 9999999999999999999999999999999999 888999999997742 456
Q ss_pred EEEeCCCc--cCHHHHHHHHHhcccccCCEEEEeCceecchhH-HHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143 106 KTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDTVSNMLL-TQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (616)
Q Consensus 106 ~~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l-~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r 182 (616)
+++.++.+ .+++-.|. .++..+..+|++++||+++...+ +.++++- . + ++++...+ +
T Consensus 73 ~iv~N~~y~ktN~~~Sl~--~akd~~~~~fii~~sD~vye~~~~e~l~~a~-~-----~----~li~d~~~--------~ 132 (239)
T COG1213 73 KIVINSDYEKTNTGYSLL--LAKDYMDGRFILVMSDHVYEPSILERLLEAP-G-----E----GLIVDRRP--------R 132 (239)
T ss_pred EEEeCCCcccCCceeEEe--eehhhhcCcEEEEeCCEeecHHHHHHHHhCc-C-----C----cEEEeccc--------c
Confidence 67765543 34465555 35667788899999999887754 4444321 1 1 12222211 2
Q ss_pred cCC-CceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc----CCChhhH
Q 007143 183 LGT-DELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD----NFDYQHL 257 (616)
Q Consensus 183 ~~~-~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d----nfd~q~l 257 (616)
+.. ++...+.+ +.|++....++-. -++-.+.||.+++++++..+.+ +-.|+.
T Consensus 133 ~~~~~ea~kv~~-e~G~i~~igK~l~---------------------e~~~e~iGi~~l~~~i~~~~~~~~~e~~~~~~- 189 (239)
T COG1213 133 YVGVEEATKVKD-EGGRIVEIGKDLT---------------------EYDGEDIGIFILSDSIFEDTYELLVERSEYDY- 189 (239)
T ss_pred ccccCceeEEEe-cCCEEehhcCCcc---------------------cccceeeeeEEechHHHHHHHHHHhhhhhHHH-
Confidence 211 12223333 3677766654321 2466788999999987765433 211111
Q ss_pred HHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhhhccc
Q 007143 258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDIIQRW 305 (616)
Q Consensus 258 r~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~dil~r~ 305 (616)
+.+++... ...+.+-..+....|.+|++|+++..+.+.+...|
T Consensus 190 -~~~~~~~~----~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 190 -REVEKEAG----LPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred -HHHHHHhC----CceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 12222211 11111111133469999999999999988876544
No 58
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.77 E-value=2.5e-19 Score=181.18 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=131.5
Q ss_pred HHHHhhhhhhhccccCceEEEEEccccchhh-------ccChhhHHHHhhhhh---------ccccccccCCCcccCCCc
Q 007143 257 LRRHFVKGLLLDDIMGYKIFTHEIHSSYAAR-------IDNYRSYDIVSKDII---------QRWTYPYVPDVKFCGNRA 320 (616)
Q Consensus 257 lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~-------V~s~~sY~~a~~dil---------~r~~~p~~p~~~~~~~~~ 320 (616)
+..+|+.++| .++++++++.+.++ .|+.+ +.+|+.|..+++|++ .||+||++|+..+...+.
T Consensus 36 l~~~~~~~~L-~~~l~~~l~~~~~~-~~~~r~~~~~~~~~~~~~~~~i~~Di~~~~~~dpa~~~~~~pll~~~gf~a~~~ 113 (273)
T PRK11132 36 LKHENLGSAL-SYMLANKLASPIMP-AIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPLLYLKGFHALQA 113 (273)
T ss_pred cCCccHHHHH-HHHHHHHhccccCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCccccceeEEEEECCChHHHHH
Confidence 4678999999 77789999999998 88888 999999999999999 899999999875544333
Q ss_pred ceeee---------cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCC
Q 007143 321 TKLER---------RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDG 391 (616)
Q Consensus 321 ~~~~~---------~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~ 391 (616)
|++.+ ..+|+...+.+..++.|++.+.||+++.|+.++ ..+||++|.||++|.| +.+|+||.+
T Consensus 114 yR~a~~l~~~~~~~la~~~~~~~~~~~gidI~~~a~IG~g~~I~h~~---givIG~~a~IGdnv~I-----~~~VtiGg~ 185 (273)
T PRK11132 114 YRIGHWLWNQGRRALAIYLQNQISVAFQVDIHPAAKIGRGIMLDHAT---GIVIGETAVIENDVSI-----LQSVTLGGT 185 (273)
T ss_pred HHHHHHHHHCCCchhhhhhhhcceeeeeeEecCcceECCCeEEcCCC---CeEECCCCEECCCCEE-----cCCcEEecC
Confidence 43333 345666666666677777777777777776654 3478888888887765 556666532
Q ss_pred ---cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143 392 ---CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 392 ---~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
+...+++||++|+||.|++|..+++||+||+||+|++ ||+++++...|
T Consensus 186 ~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~IGAgSvV~~dVp~~~~v~G~P 240 (273)
T PRK11132 186 GKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVP 240 (273)
T ss_pred cccCCCcCCEECCCcEEcCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecC
Confidence 3345678899999999999999999999999999887 56666666544
No 59
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.76 E-value=5.7e-17 Score=163.46 Aligned_cols=227 Identities=16% Similarity=0.147 Sum_probs=149.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
+.|||||+|.++||. ||+|+|++|+|||+|+++.|..+ |+++|+|++++ +.+.+++.. + ++++.+
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~--~----~~~~~~ 67 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES--F----GGKVVM 67 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH--c----CCEEEE
Confidence 579999999999996 79999999999999999999999 99999998764 678888754 1 244443
Q ss_pred EeCCCccCHHHHHHHHHhcccccC--C-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIHG--D-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSR 182 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~--d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r 182 (616)
.......|++.+...+. .+.. + ||++.||+ +....|..+++.|+.. .++.+|+++.+.... . ...+
T Consensus 68 ~~~~~~~gt~~~~~~~~---~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~ 138 (239)
T cd02517 68 TSPDHPSGTDRIAEVAE---KLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD----PGVDMATLATPISDE-E-ELFN 138 (239)
T ss_pred cCcccCchhHHHHHHHH---hcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC----CCCCEEEEEEEcCCH-H-HccC
Confidence 33334567776554332 2332 4 99999997 6677999999988653 135566666554211 0 0002
Q ss_pred cCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC--CChhhHHHH
Q 007143 183 LGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRRH 260 (616)
Q Consensus 183 ~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn--fd~q~lr~d 260 (616)
++ ..-+.++. .++|+.|.++|.+..... . .....+..+|||++++++++.+... +.+.. .+
T Consensus 139 ~~--~~~v~~~~-~~~v~~~~~~~~~~~~~~-----------~-~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~--~~ 201 (239)
T cd02517 139 PN--VVKVVLDK-DGYALYFSRSPIPYPRDS-----------S-EDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQ--IE 201 (239)
T ss_pred CC--CCEEEECC-CCCEEEecCCCCCCCCCC-----------C-CCCceeEEEEEEEECHHHHHHHHhCCCchhhh--hh
Confidence 22 11245653 578888887653210000 0 0013478899999999999977542 22211 11
Q ss_pred hhh--hhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143 261 FVK--GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK 299 (616)
Q Consensus 261 fv~--~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~ 299 (616)
.+. .++ -.|.+++++..+ ++|.+|+++++|..+.+
T Consensus 202 ~~~~~~~~---~~g~~v~~~~~~-~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 202 SLEQLRAL---ENGYKIKVVETD-HESIGVDTPEDLERVEA 238 (239)
T ss_pred hHHHHHHH---HCCCceEEEEeC-CCCCCCCCHHHHHHHHh
Confidence 111 122 256779999886 68999999999998764
No 60
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.71 E-value=1.2e-16 Score=159.55 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=121.4
Q ss_pred EEEccccchhhccChhhHHHHhhhhhccccccccCCCcccCCCcceeeecceEEcCCcEECCCCEECCCcEECCCCEECC
Q 007143 277 THEIHSSYAARIDNYRSYDIVSKDIIQRWTYPYVPDVKFCGNRATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGS 356 (616)
Q Consensus 277 ~~~~~~~y~~~V~s~~sY~~a~~dil~r~~~p~~p~~~~~~~~~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~ 356 (616)
++.+. +||.++ ++|.++++++|..+.. ..+-... .....-+++.++.|++++.|.+++.||+++.|++
T Consensus 42 ~~~~~-gyW~Di---~~yl~an~diL~~~~~-~~~~~~~-------~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~~I~~ 109 (231)
T TIGR03532 42 SGVLF-GEWEDI---EPFIEANKDKIKDYRI-ENDRRNS-------AIPLLDLKNINARIEPGAIIRDQVIIGDNAVIMM 109 (231)
T ss_pred cEEEE-EeHHHH---HHHHHHhHhhhcceEE-eeccccc-------ccccccccccccEECCCCEEeCCeEECCCCEEec
Confidence 55665 899999 9999999999987641 1110000 0111123678888999999999999999999999
Q ss_pred CCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec---------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143 357 NSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH---------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (616)
Q Consensus 357 ~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~---------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (616)
++.|. +++||++|.|++++.|. +++||++|.|+.++.|.+ ++|+++|+||.+++|.++++||++++|++
T Consensus 110 ~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~~Iga 189 (231)
T TIGR03532 110 GAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGAVVAA 189 (231)
T ss_pred CcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCCEECC
Confidence 99995 79999999999999995 899999999999999974 88999999999999988888888888888
Q ss_pred CCEE----CCCCEEcccc
Q 007143 426 RFVV----PAHSKVSLLQ 439 (616)
Q Consensus 426 ~~~v----~~~~~v~~~~ 439 (616)
+++| ++++++...|
T Consensus 190 gsvV~~di~~~~vv~G~P 207 (231)
T TIGR03532 190 GAIVTEDVPPNTVVAGVP 207 (231)
T ss_pred CCEEccccCCCcEEEecC
Confidence 8874 6777777655
No 61
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.71 E-value=8.4e-16 Score=154.84 Aligned_cols=228 Identities=16% Similarity=0.175 Sum_probs=147.0
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
.+.|||||+|.++||. +|+|+|++|+|||+|+++.|.++ ++++|+|++++ +.+++++... ++++.
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~~------~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEAF------GGKVV 67 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHHc------CCeEE
Confidence 4689999999999994 69999999999999999999999 89999998864 6788888652 24443
Q ss_pred EEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143 107 TIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~ 183 (616)
+..+....|++..... ...+..+ |+++.||+ +...++..+++.|+.. +...+++++.+.... . ....+
T Consensus 68 ~~~~~~~~g~~~~~~a---~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~----~~~~~~~~~~~~~~~-~-~~~~p 138 (238)
T PRK13368 68 MTSDDHLSGTDRLAEV---MLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDD----PSINVATLCAPISTE-E-EFESP 138 (238)
T ss_pred ecCccCCCccHHHHHH---HHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHC----CCccceeEEEEcCCH-H-HhcCc
Confidence 3333333455543222 2223434 99999996 7788999999988753 223455555443210 0 00001
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC--CChhhHHH-H
Q 007143 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN--FDYQHLRR-H 260 (616)
Q Consensus 184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn--fd~q~lr~-d 260 (616)
+ ...+.++ ..+++..+.++|.+..+. .. ....+.++|||+++++++..+... ++.+.+.. +
T Consensus 139 ~--~~~~~~~-~~g~v~~~~~~~~~~~~~------------~~-~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~ 202 (238)
T PRK13368 139 N--VVKVVVD-KNGDALYFSRSPIPSRRD------------GE-SARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLE 202 (238)
T ss_pred C--CCEEEEC-CCCCEEEeeCCCCCCCCC------------CC-CCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHH
Confidence 2 1113455 358898888654211000 00 012367899999999999987542 22111111 3
Q ss_pred hhhhhhhccccCceEEEEEccccchhhccChhhHHHHhh
Q 007143 261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSK 299 (616)
Q Consensus 261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~ 299 (616)
++ .++. .|.+++++.. +++|.+|+++++|..+..
T Consensus 203 ~~-~~~~---~g~~v~~~~~-~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 203 QL-RALE---HGEKIRMVEV-AATSIGVDTPEDLERVRA 236 (238)
T ss_pred HH-HHHH---CCCceEEEEe-CCCCCCCCCHHHHHHHHH
Confidence 33 2322 5778999985 489999999999998754
No 62
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.65 E-value=1.5e-15 Score=166.09 Aligned_cols=166 Identities=16% Similarity=0.233 Sum_probs=121.0
Q ss_pred CCeEEEEEeCCCCCCCCCCCCC-CCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCc
Q 007143 27 QPLQAILLADSFTTKFRPITLE-RPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF 103 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~-~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~ 103 (616)
+.|.+||||+|+|+||+|+|.. .||+|+|+.| +|||+++++.+...++.+.+|+++. +.+.+++.+..... .
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~~~-----~ 78 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNK-----L 78 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhcCC-----c
Confidence 4489999999999999999987 7999999965 7999999999999998888888874 46677777754210 1
Q ss_pred EEEEEeCCCccCHHHHHHHHHh--cccc-c-CC-EEEEeCcee-cch-hHHHHHHHHHHhhccCCCceEEEEEecCCCCC
Q 007143 104 TVKTIESHNIISAGDALRLIYE--QNVI-H-GD-FVLISGDTV-SNM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPSP 176 (616)
Q Consensus 104 ~i~~i~~~~~~~~gdalr~~~~--~~~i-~-~d-fLlv~gD~i-~~~-~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~ 176 (616)
...++.++..+.|+.|+..... +..- . +. ++++++|++ .+. .|.+.+++..+..+ .+.++|+..++..|.
T Consensus 79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~--~~~lvt~GI~Pt~Pe- 155 (478)
T PRK15460 79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAE--AGKLVTFGIVPDLPE- 155 (478)
T ss_pred cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHh--cCCEEEEecCCCCCC-
Confidence 2357778888899988764321 1111 1 22 889999995 443 47777666554322 268999999887764
Q ss_pred CCcccccCCCceEEEEeCC--------CCeEEEeeecCCC
Q 007143 177 ITHQSRLGTDELFMAIDPN--------TKQLLYYEDKADH 208 (616)
Q Consensus 177 ~~~~~r~~~~~~vv~id~~--------~~rvl~~~e~p~~ 208 (616)
+.|| ++..... -.+|..|.|||+.
T Consensus 156 ----TgyG----YI~~g~~~~~~~~~~~~~V~~F~EKPd~ 187 (478)
T PRK15460 156 ----TGYG----YIRRGEVSAGEQDTVAFEVAQFVEKPNL 187 (478)
T ss_pred ----CCCC----eEEeCCccccccccCceEeeEEEeCCCH
Confidence 5677 7765532 1479999999973
No 63
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.64 E-value=5.1e-15 Score=140.57 Aligned_cols=120 Identities=20% Similarity=0.282 Sum_probs=102.6
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECC
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCD 401 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~ 401 (616)
...+.+++++++.|++++.|.++++||++|.|++++.|+ +++||++|.|++++.|.+++|++++.|+.++.+.+++|++
T Consensus 13 ~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~ 92 (163)
T cd05636 13 TIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE 92 (163)
T ss_pred EECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC
Confidence 445678899999999999998899999999999999996 6999999999999999999999999999999999999999
Q ss_pred CcEECCCCEECC------------------------CCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 402 GVIMKAGAVLKP------------------------GVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 402 ~v~Ig~~~~I~~------------------------g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
++.|++++++.. +++|++++.||.+++|.++++|+....++
T Consensus 93 ~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~ 157 (163)
T cd05636 93 NVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVY 157 (163)
T ss_pred CCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEEC
Confidence 999999988743 57888888888888888888887655433
No 64
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.4e-14 Score=146.42 Aligned_cols=245 Identities=13% Similarity=0.163 Sum_probs=155.8
Q ss_pred CeEEEEEeCCCCCCCCCCC-CCCCcccceeCC-eehHHHHHHHHHH-CCCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCc
Q 007143 28 PLQAILLADSFTTKFRPIT-LERPKVLLPLVN-VPMINYTLAWLEA-AGVAEVFVFCCA-HSKQVIDYLENSEWFSQPNF 103 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT-~~~PK~Llpi~g-~PlI~y~Le~L~~-~Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~ 103 (616)
.|.+||||+|.|+|||||+ ...||++|++.+ +.|++.|++.++. .+.++++|||+. |...+++.+.+.... ..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~---~~ 77 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIE---NA 77 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhc---cc
Confidence 3789999999999999998 568999999965 9999999999999 678999999985 466677777652110 11
Q ss_pred EEEEEeCCCccCHHHHHHHHHhccccc--CC--EEEEeCceec-ch-hHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143 104 TVKTIESHNIISAGDALRLIYEQNVIH--GD--FVLISGDTVS-NM-LLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (616)
Q Consensus 104 ~i~~i~~~~~~~~gdalr~~~~~~~i~--~d--fLlv~gD~i~-~~-~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~ 177 (616)
.- ++.++..+.|+.|+.... ....+ +| ++|++.|++. +. .+...++...+- ..++.++|+..++..|.
T Consensus 78 ~~-illEP~gRnTApAIA~aa-~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~--A~~g~lVTfGI~Pt~Pe-- 151 (333)
T COG0836 78 AG-IILEPEGRNTAPAIALAA-LSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKA--AEEGGIVTFGIPPTRPE-- 151 (333)
T ss_pred cc-eEeccCCCCcHHHHHHHH-HHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHH--HHcCCEEEEecCCCCCc--
Confidence 12 677788888998887542 22222 24 8999999954 43 466666654443 23458999998887664
Q ss_pred CcccccCCCceEEEEeC-----CCCeEEEeeecCCCC-------CcceEeehHhhhcCCceEEEeccccceeEeeCHhHH
Q 007143 178 THQSRLGTDELFMAIDP-----NTKQLLYYEDKADHS-------KGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVL 245 (616)
Q Consensus 178 ~~~~r~~~~~~vv~id~-----~~~rvl~~~e~p~~~-------~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl 245 (616)
+.|| ++.... ...+|-.|.|||+.. .|.|.++.++|... .+.+--...-+.|+++
T Consensus 152 ---TGYG----YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fr------a~~~l~e~~~~~P~i~ 218 (333)
T COG0836 152 ---TGYG----YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFR------ASVFLEELKKHQPDIY 218 (333)
T ss_pred ---cCcc----eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEE------HHHHHHHHHhhCcHHH
Confidence 4566 554422 256788999999822 45566666655431 1111111222345554
Q ss_pred hhhhcC------CC--------hhhHHHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHH
Q 007143 246 SLFTDN------FD--------YQHLRRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIV 297 (616)
Q Consensus 246 ~lf~dn------fd--------~q~lr~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a 297 (616)
....+- ++ |+......+...+ +.+..++++...+ -.|.|++||.+.+++
T Consensus 219 ~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAi--MEkt~~~aVVp~~-f~WsDlGsW~Al~~~ 281 (333)
T COG0836 219 CAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAI--MEKTSKAAVVPAD-FGWSDLGSWHALWEV 281 (333)
T ss_pred HHHHHHHhcccccchhcccHHHHhhCcccchhHHH--HhhhcceEEEecC-CCcccccCHHHHHHH
Confidence 432221 11 1111111221111 1244577777775 799999999987765
No 65
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.60 E-value=1.6e-14 Score=136.09 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=98.2
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEEC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~siIg 400 (616)
++.++.+++++.|.+++.||++|.|+++++|. .++||++|.|+++|+| .+++|++++.|+.++++.+++||
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig 82 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIG 82 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEEC
Confidence 46677888888888899999999999999996 4899999999999999 56999999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
++++||.++.|..+++|+++++|+++++|.+++.+...
T Consensus 83 ~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~ 120 (155)
T cd04745 83 RNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPR 120 (155)
T ss_pred CCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCC
Confidence 99999999999999999999999999988887777643
No 66
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.60 E-value=1.8e-14 Score=136.85 Aligned_cols=115 Identities=21% Similarity=0.207 Sum_probs=88.6
Q ss_pred ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEEC
Q 007143 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg 400 (616)
.....+++++++++.|++++.|.++++||++|.|++++.|.+++||++|.|+.++.+.+++||+++.|++++.+.+..+.
T Consensus 29 ~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~ 108 (163)
T cd05636 29 GAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFD 108 (163)
T ss_pred CCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcC
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999998542111
Q ss_pred -------------------CCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143 401 -------------------DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (616)
Q Consensus 401 -------------------~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v 435 (616)
.++.|+++++|+.+++|.++++||++++|++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 109 DKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred CcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 13444444444444455555555555555555544
No 67
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.60 E-value=1.1e-14 Score=141.41 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=98.9
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEE-----eceEECCCCEECCCcEEeceEEC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLI-----EGSYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I-----~~s~I~~~v~Ig~~~~I~~siIg 400 (616)
+++++.|++++.|.+++.||++|.|+++|+|+ .++||++|.||++|+| .+++||++++|+.++.|.+|+|+
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg 90 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVG 90 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEEC
Confidence 67888999999998999999999999999996 5799999999999999 46999999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+++.||.+++|..+++||+++.|+++++|.+++.+..
T Consensus 91 ~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~ 127 (192)
T TIGR02287 91 RNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPA 127 (192)
T ss_pred CCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECC
Confidence 9999999999999999999999999998888777754
No 68
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=2.2e-14 Score=136.23 Aligned_cols=109 Identities=19% Similarity=0.273 Sum_probs=96.2
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEec-----------eEECCCCEECCCcEE
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----------SYIWDNVIIEDGCEL 394 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~-----------s~I~~~v~Ig~~~~I 394 (616)
+++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|+|.+ +.|++++.+..++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 57788899999998999999999999999984 579999999999999975 468888888889999
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
.+++||++|+||.+++|.+|++||++++||++++|.+++.+...
T Consensus 82 ~~~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~ 125 (164)
T cd04646 82 EALKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPEN 125 (164)
T ss_pred EeeEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCC
Confidence 99999999999999999999999999999999988888777543
No 69
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.57 E-value=3e-14 Score=138.80 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=96.1
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEE
Q 007143 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIV 399 (616)
Q Consensus 329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siI 399 (616)
.+++++.|++++.|.+++.||++|.|+++++|+. ++||++|.||++|+|+ +++|++++.||.++.+.+++|
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vI 91 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVI 91 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEE
Confidence 3577888899998888999999999999999964 5899999999999996 478999999999999999999
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (616)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v 435 (616)
|++|+||.+++|.+|++||++++|++|++|.++..+
T Consensus 92 G~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~i 127 (196)
T PRK13627 92 GRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQG 127 (196)
T ss_pred CCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCc
Confidence 999999999999999999999999999988776654
No 70
>PLN02472 uncharacterized protein
Probab=99.55 E-value=7.3e-14 Score=140.35 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=99.6
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----------ceEECCCCEECCCcEE
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL 394 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I 394 (616)
++.++.+.+++.|.+++.||+++.|+++++|+ ..+||++|.|+++|+|+ +++||++|+||.+|.|
T Consensus 62 i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L 141 (246)
T PLN02472 62 VAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLL 141 (246)
T ss_pred cCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEE
Confidence 66778889999998999999999999999985 37899999999999995 5899999999999999
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
.+|+|+++|.||.+++|.+|++|+++++|+++++|+++..+...
T Consensus 142 ~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g 185 (246)
T PLN02472 142 RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTG 185 (246)
T ss_pred CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCC
Confidence 99999999999999999999999999999999999988888653
No 71
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.55 E-value=4.1e-14 Score=132.36 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=99.4
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----ceEECCCCEECCCcEEeceEEC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~siIg 400 (616)
+++.+.+++++.|-+++.||+++.|.++++|+ ...||++|.|.+||+|+ .+.|+++++||.++.|.+|.|+
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig 93 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIG 93 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEEC
Confidence 56668888899988999999999999999995 57899999999999997 5799999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
++|.||-|++|.+||.||++|.||+|+.|+++.++..
T Consensus 94 ~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~ 130 (176)
T COG0663 94 DNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG 130 (176)
T ss_pred CCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCC
Confidence 9999999999999999999999999999988887654
No 72
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.55 E-value=6.3e-14 Score=142.75 Aligned_cols=122 Identities=17% Similarity=0.113 Sum_probs=86.8
Q ss_pred ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEe--------c
Q 007143 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------G 379 (616)
Q Consensus 321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~--------~ 379 (616)
+....++++++.++.|++.|.|++++.||++|.|+++++|+ +++||++|.|+++|+|. .
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~ 102 (254)
T cd03351 23 FCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGV 102 (254)
T ss_pred CcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCc
Confidence 33445566777777777777777777777777777777775 57788888888888875 3
Q ss_pred eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 380 SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 380 s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
++||+++.|+.++.| .+++||++|+|+.++.|..+++||++|.|+.++.|.++++|+....++
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig 166 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVG 166 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEEC
Confidence 677777777777777 567777777777777777777777777777766666666666554333
No 73
>PLN02296 carbonate dehydratase
Probab=99.54 E-value=6.9e-14 Score=142.32 Aligned_cols=109 Identities=24% Similarity=0.266 Sum_probs=97.2
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-----------ceEECCCCEECCCcEE
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-----------GSYIWDNVIIEDGCEL 394 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-----------~s~I~~~v~Ig~~~~I 394 (616)
++.++.|++++.|.+++.||++|.|+++|+|. +++||++|.|+++|+|+ +++||++|+|+.+|+|
T Consensus 55 I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI 134 (269)
T PLN02296 55 VDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVL 134 (269)
T ss_pred cCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCcee
Confidence 66778888888888889999999999999996 35899999999999995 5899999999999999
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
.+++|+++|+||.+++|.+|++|+++++|++|++|+++++|...
T Consensus 135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~ 178 (269)
T PLN02296 135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSG 178 (269)
T ss_pred cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCC
Confidence 99999999999999999999999999999999988888776543
No 74
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.53 E-value=1.7e-13 Score=128.93 Aligned_cols=109 Identities=25% Similarity=0.200 Sum_probs=97.5
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEec----eEECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEEC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siIg 400 (616)
+++++.+++++.|.+++.||++|.|++++.|.. ++||++|.|+++|.|.. ++||+++.|+.+|++.+++||
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 82 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVG 82 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEEC
Confidence 567788888888888999999999999999975 59999999999999975 899999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
++++|+.++.|..+++|+++++|++++.|.++..+...
T Consensus 83 ~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~ 120 (154)
T cd04650 83 NYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDY 120 (154)
T ss_pred CCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCC
Confidence 99999999999989999999999998888877766543
No 75
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.53 E-value=1.3e-13 Score=140.40 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=87.6
Q ss_pred eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEe--------ce
Q 007143 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIE--------GS 380 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~--------~s 380 (616)
....+++.+++++.|+++|.|.+++.||++|.|+++++|+ +++||++|.|+++|+|. .+
T Consensus 23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~ 102 (254)
T TIGR01852 23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT 102 (254)
T ss_pred CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence 3445566677777777777777778888888888888885 47788888888888885 35
Q ss_pred EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 381 ~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
+||+++.|+.++.| .++.||++++|+.++.|..+++||++|.||.++.|.++++|+....++
T Consensus 103 ~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig 165 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIG 165 (254)
T ss_pred EECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEe
Confidence 77777777777777 567777777777777777777777777777777666666665544333
No 76
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.52 E-value=1.8e-13 Score=139.47 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=94.3
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-------------ceEECCCCEE
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (616)
...+..++++++.|++++.|++++.||++|.|+++++|. +++||++|.|+++++|. ++.|++++.|
T Consensus 7 ~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 86 (254)
T cd03351 7 IVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTI 86 (254)
T ss_pred EECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEE
Confidence 345667788899999999999999999999999999996 79999999999999996 6889999999
Q ss_pred CCCcEEec--------eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 389 EDGCELRH--------VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 389 g~~~~I~~--------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
+++|+|.. ++||+++.|+++++|..+|+||++|+|++++.+..+++|+...
T Consensus 87 g~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~ 145 (254)
T cd03351 87 REFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYA 145 (254)
T ss_pred CCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCc
Confidence 99999963 7788888888877777677777766666665555544444433
No 77
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.52 E-value=1.7e-13 Score=134.55 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=83.5
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEece------------
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHV------------ 397 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~s------------ 397 (616)
+++++.|++++.| .++.||+++.|+++|.|.+++||++|.|+.+|.|.+++||++|.|++++.|...
T Consensus 5 ~~~~~~I~~~a~i-~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~ 83 (204)
T TIGR03308 5 LSPEPTLHPTAEL-TESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHF 83 (204)
T ss_pred cCCCCeECCCcEE-eccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccc
Confidence 5677889999999 468999999999999999999999999999999999999999999999988521
Q ss_pred --------------------EECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 398 --------------------IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 398 --------------------iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
....++.||++++|+.+++|.++++||++++|+++++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~ 143 (204)
T TIGR03308 84 TYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTK 143 (204)
T ss_pred ccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 0124566666666666666666666666666666666654
No 78
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.51 E-value=2.8e-13 Score=127.28 Aligned_cols=109 Identities=19% Similarity=0.234 Sum_probs=96.9
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe----ceEECCCCEECCCCEEec-----eEECCCCEECCCcEEeceEEC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIEG-----SYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~~-----s~I~~~v~Ig~~~~I~~siIg 400 (616)
+++++.++++++|.+++.||+++.|+++++|. +++||++|.|+++|+|.. ++|++++.|+.+|++.+++|+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig 81 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIG 81 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEEC
Confidence 45677888888888889999999999999885 369999999999999986 599999999999999999999
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
++++|+.++.|..+++|+++|.|+++++|.+++.+...
T Consensus 82 ~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~ 119 (153)
T cd04645 82 DNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPG 119 (153)
T ss_pred CCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCC
Confidence 99999999999989999999999998888877777643
No 79
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.51 E-value=4.4e-13 Score=130.88 Aligned_cols=80 Identities=28% Similarity=0.381 Sum_probs=55.9
Q ss_pred eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCC
Q 007143 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDG 402 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~ 402 (616)
..+.+++++++.|++++.|++++.||++|.|++++.|.++.||++|.|++++.|.+++|++++.|+.++.|. +++|+++
T Consensus 12 ~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~ 91 (193)
T cd03353 12 IDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEG 91 (193)
T ss_pred EcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCC
Confidence 345677777777777777777777787788877777777777777777777777777766666666666654 3444433
Q ss_pred c
Q 007143 403 V 403 (616)
Q Consensus 403 v 403 (616)
+
T Consensus 92 ~ 92 (193)
T cd03353 92 V 92 (193)
T ss_pred C
Confidence 3
No 80
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=4.6e-14 Score=131.66 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=84.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|.|||||||+|+||.|||...||+||.|.|+|||+++|++|..+|+.+|+||+|+..+++. |+.+. ..|+.+
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~Fe-YLkdK-------y~vtLv 72 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQFE-YLKDK-------YDVTLV 72 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHHH-HHHHh-------cCeEEE
Confidence 5799999999999999999999999999999999999999999999999999999988875 66652 357778
Q ss_pred eCCCccCHHHHHHHHHhcccccCCEEEEeCceecc
Q 007143 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDTVSN 143 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~ 143 (616)
..+.....-..-....+++++.+ -.++.+|.+..
T Consensus 73 yN~kY~~yNn~ySlyla~d~l~n-tYiidsDnyl~ 106 (231)
T COG4750 73 YNPKYREYNNIYSLYLARDFLNN-TYIIDSDNYLT 106 (231)
T ss_pred eCchHHhhhhHHHHHHHHHHhcc-cEEeccchHhh
Confidence 77765443333333345655554 44567887543
No 81
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.49 E-value=5.6e-13 Score=135.81 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=90.0
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-------------ceEECCCCEE
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (616)
+..+.+++++++.|++.+.|++++.||+++.|++++.|. +++||++|.|+++++|. +++||+++.|
T Consensus 6 ~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I 85 (254)
T TIGR01852 6 IIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTI 85 (254)
T ss_pred EeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEE
Confidence 345667788888888888888899999999999999885 89999999999999996 5889999999
Q ss_pred CCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 389 EDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 389 g~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+++|+|. .++||+++.|+.++.|..+|+||++|.|++++.+..+++|+.
T Consensus 86 ~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd 142 (254)
T TIGR01852 86 REFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGD 142 (254)
T ss_pred CCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECC
Confidence 9999996 457777777777777666666666666655555544444443
No 82
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=3.6e-13 Score=137.68 Aligned_cols=51 Identities=31% Similarity=0.342 Sum_probs=23.7
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI 377 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I 377 (616)
.+.+++++.|++.|.|++++.||++|.|+++++|. +++||++|.|+++++|
T Consensus 14 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 14 GAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred CCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 33344444444444444444444444444444442 4445555555555444
No 83
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.47 E-value=8.9e-13 Score=127.50 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=88.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|.|||||+|+|+||++ .||+|+|++|+|||+|+++.|..+++++|+|+++++.+.++.|+.+.. ..+.
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~--------~~~~ 68 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY--------KDYK 68 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC--------cEEE
Confidence 6899999999999986 699999999999999999999999999999999988888998886521 1122
Q ss_pred eCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHHHHh
Q 007143 109 ESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEHKER 156 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h~~~ 156 (616)
. ....|....+..........++||+++||+ +....+..+++.+...
T Consensus 69 ~-~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~ 117 (183)
T TIGR00454 69 N-ASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCI 117 (183)
T ss_pred e-cCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhc
Confidence 2 233454444443322111235699999998 6677899999987664
No 84
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.47 E-value=4.9e-13 Score=136.65 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=95.7
Q ss_pred cceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec-------
Q 007143 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG------- 379 (616)
Q Consensus 320 ~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~------- 379 (616)
++....++++++.++.|++.+.|.+++.||++|.|+++++|+ .++||++|.|+++|+|..
T Consensus 25 p~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~ 104 (262)
T PRK05289 25 PFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGG 104 (262)
T ss_pred CCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCC
Confidence 345556778888888888888888899999999999999996 488999999999999974
Q ss_pred -eEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 380 -SYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 380 -s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
+.||+++.|+.+++|. +|+||++++|+.++.+..+++|+++|.||.++.|.++++|+....++
T Consensus 105 ~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig 169 (262)
T PRK05289 105 VTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVG 169 (262)
T ss_pred eeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEe
Confidence 4789998888888885 68888888877777776666777766666666666555555544333
No 85
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.46 E-value=1.1e-12 Score=134.18 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=8.9
Q ss_pred eEECCCcEECCCCEECCC
Q 007143 397 VIVCDGVIMKAGAVLKPG 414 (616)
Q Consensus 397 siIg~~v~Ig~~~~I~~g 414 (616)
.+|+++|.||.+++|.++
T Consensus 203 V~Igd~VeIGanT~Idrg 220 (338)
T COG1044 203 VIIGDDVEIGANTTIDRG 220 (338)
T ss_pred EEECCceEEcccceeccc
Confidence 444555555555554444
No 86
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.46 E-value=1.1e-12 Score=133.25 Aligned_cols=52 Identities=25% Similarity=0.289 Sum_probs=26.4
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE 378 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~ 378 (616)
+..++.++.|++.|.|++++.||++|.|+++++|. ++.||++|.|++++.|.
T Consensus 11 ~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig 63 (255)
T PRK12461 11 SAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVG 63 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeC
Confidence 33444444455555555555555555555555553 45555555555555553
No 87
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.46 E-value=1.5e-12 Score=123.50 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=75.8
Q ss_pred CcEECCCCEECC--CcEECCCCEECCCCEEec----eEECCCCEECCCCEEec-------------eEECCCCEECCCcE
Q 007143 333 EIEQSRSAQVGS--FTVIGYGTKIGSNSKISD----SVIGEGCTIGSNVLIEG-------------SYIWDNVIIEDGCE 393 (616)
Q Consensus 333 ~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~----s~IG~~~~Ig~~~~I~~-------------s~I~~~v~Ig~~~~ 393 (616)
+.+|++.+.|.+ ++.||+++.|+++++|.. ++||++|.|+++|+|.+ +.|++++.|+++|.
T Consensus 7 ~~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~ 86 (161)
T cd03359 7 GNKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCV 86 (161)
T ss_pred CCeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCE
Confidence 344555555532 556666666666666642 46777777777777653 46888888888888
Q ss_pred EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
+.++.|+++++||++++|+.+++|++++.|+++++|+++++++...
T Consensus 87 i~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~ 132 (161)
T cd03359 87 VNAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS 132 (161)
T ss_pred EEeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCC
Confidence 8888888888888888888888888888888877777777765443
No 88
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.45 E-value=8.6e-13 Score=132.50 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=77.5
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe-ceEECCCCEECCCcEE---------eceE
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL---------RHVI 398 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I---------~~si 398 (616)
...++.+.+++.|.++++||+++.|+++ .| .++.||++|+|+.+++|+ ++.|+++|.|+.++.| .+++
T Consensus 97 ~~~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~Vi 175 (269)
T TIGR00965 97 KKAGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTI 175 (269)
T ss_pred ecCCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeE
Confidence 3445555666666666666666666654 23 356677777777777664 4667777777777666 3578
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
|+++|+||++|.|.+|++||++++||+|++|+++++|..
T Consensus 176 IgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~ 214 (269)
T TIGR00965 176 IEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYD 214 (269)
T ss_pred ECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEec
Confidence 899999999999998999999999999999998888875
No 89
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.45 E-value=2.2e-12 Score=135.56 Aligned_cols=70 Identities=29% Similarity=0.348 Sum_probs=38.0
Q ss_pred ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I 394 (616)
.+.+.+++++.|++++.|++++.||++|.|+++++|+ +++||++|.|+++|+|. ++.|+++|.|+++|+|
T Consensus 101 ~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 101 DPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred CCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEE
Confidence 3344455555555555555555555555555555552 55555555555555554 5555555555555555
No 90
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.44 E-value=1.5e-12 Score=136.87 Aligned_cols=116 Identities=18% Similarity=0.224 Sum_probs=84.7
Q ss_pred eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe---------------------c
Q 007143 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---------------------G 379 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~---------------------~ 379 (616)
....++++++.++.|++++.|++++.||++|.|+++++|. +++||++|.|+++|+|. .
T Consensus 116 ~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~ 195 (324)
T TIGR01853 116 VVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGR 195 (324)
T ss_pred cEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccce
Confidence 4445566777777777777777788888888888888886 89999999999999994 3
Q ss_pred eEECCCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 380 SYIWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 380 s~I~~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
++|+++|.||.+++|. +++||+++.|++.+.|+.+|.||++|+|++++.|..+++|+.
T Consensus 196 vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~ 258 (324)
T TIGR01853 196 VIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGR 258 (324)
T ss_pred EEECCCcEECCCCEEecCCcCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECC
Confidence 7899999999999884 456666666666666666666666666555554444444443
No 91
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.44 E-value=1.1e-12 Score=133.99 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=65.9
Q ss_pred cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceEECC
Q 007143 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWD 384 (616)
Q Consensus 326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~I~~ 384 (616)
.++.+|+++.|+++|.|++++.||++|.|.++++|. ++.||++|.|+++++|. +.+|++
T Consensus 128 ~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~V~Igd 207 (338)
T COG1044 128 AGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGRVIIGD 207 (338)
T ss_pred CCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceeceEEECC
Confidence 344444444444445555555555555555555554 57888888888888885 257888
Q ss_pred CCEECCCcEEec-----eEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 385 NVIIEDGCELRH-----VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 385 ~v~Ig~~~~I~~-----siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+|.||.+++|.+ ++|++++.|.+-+.|+.+|.||.+|.|..++-|...+.|+.
T Consensus 208 ~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~ 265 (338)
T COG1044 208 DVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGK 265 (338)
T ss_pred ceEEcccceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECC
Confidence 888888888843 55555555555555555555555554444444333333333
No 92
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.43 E-value=2.1e-12 Score=119.36 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=48.0
Q ss_pred EECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143 364 VIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433 (616)
Q Consensus 364 ~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~ 433 (616)
.||++|.|+.++.|. ++.|+++|.|+.++.|. .++|+++++|+.+++|.++++|+++++|+++++|.+++
T Consensus 33 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~ 112 (139)
T cd03350 33 YVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQST 112 (139)
T ss_pred EECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCe
Confidence 344444444444442 34455555555555553 46778888888888888888888888888888888777
Q ss_pred EEcc
Q 007143 434 KVSL 437 (616)
Q Consensus 434 ~v~~ 437 (616)
+|+.
T Consensus 113 ~I~~ 116 (139)
T cd03350 113 PIYD 116 (139)
T ss_pred Eecc
Confidence 7754
No 93
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.42 E-value=1.5e-12 Score=116.70 Aligned_cols=100 Identities=25% Similarity=0.273 Sum_probs=85.3
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAG 408 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~ 408 (616)
+++++.|++++.|++++.||++|+|++++.|. +++||++|.|++++.|.++. +.+..+..++.+.+++|+++++||.+
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~-~~~~~~~~~~~~~~~~Ig~~~~Ig~~ 79 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDL-YPRSKIYRKWELKGTTVKRGASIGAN 79 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCC-CCccccccccccCCcEECCCcEECcC
Confidence 35778888888998899999999999999994 89999999999999998864 44555566888999999999999999
Q ss_pred CEECCCCEECCCcEECCCCEEC
Q 007143 409 AVLKPGVVLSFKVVIGERFVVP 430 (616)
Q Consensus 409 ~~I~~g~vIg~~v~Ig~~~~v~ 430 (616)
+.|.++++|++++.|++++++.
T Consensus 80 ~~v~~~~~ig~~~~i~~~~~v~ 101 (119)
T cd03358 80 ATILPGVTIGEYALVGAGAVVT 101 (119)
T ss_pred CEEeCCcEECCCCEEccCCEEe
Confidence 9999889999888888887754
No 94
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.42 E-value=1.5e-12 Score=108.74 Aligned_cols=79 Identities=34% Similarity=0.596 Sum_probs=67.1
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427 (616)
Q Consensus 348 Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (616)
||+++.|++++.|.+++||++|.|+++|+|.+++|++++.|+.+|.|.+++|++++.|++++.|. +|+|+++++|++++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~-~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLK-DCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEc-cCEECCCcEeCCCC
Confidence 67778888888888888999999999999988999999999999999999999999999998886 67777777777663
No 95
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.41 E-value=1.5e-12 Score=107.80 Aligned_cols=79 Identities=54% Similarity=1.059 Sum_probs=69.8
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (616)
Q Consensus 347 ~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (616)
+||+++.|++++.|.+++||++|.|+++|+|.++.|++++.|+++++|.+++|++++.|+.++.|+++++|++++.||+
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 3678888888888888999999999999999999999999999999999999999999998888888888777777764
No 96
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.41 E-value=3.2e-12 Score=135.87 Aligned_cols=69 Identities=29% Similarity=0.393 Sum_probs=35.5
Q ss_pred cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394 (616)
Q Consensus 326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I 394 (616)
+.+.++.++.|++++.|++++.||++|.|+++++|+ ++.||++|.|+++|+|. ++.|+++|+|+++|+|
T Consensus 111 ~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 111 PSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred CCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 344444455555555555555555555555555553 45555555555555553 2345555555555555
No 97
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.41 E-value=1.8e-12 Score=107.46 Aligned_cols=79 Identities=30% Similarity=0.450 Sum_probs=67.0
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (616)
Q Consensus 347 ~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (616)
+||+++.|++++.|.+++||++|.||+++.|.+++|++++.|+++|.|.+++|++++.|++++.|..+++|+++++|++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 3677778888888878889999999999999999999999999999999999999999888888887788887777763
No 98
>PLN02917 CMP-KDO synthetase
Probab=99.40 E-value=3.6e-11 Score=124.80 Aligned_cols=235 Identities=14% Similarity=0.141 Sum_probs=143.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.+.+||+|+|.++||. +|+|+|++|+|||+|+++.+..++..+.+|+ ++..+.+++++.+. ++.+.
T Consensus 46 ~~i~aIIpA~G~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~~~------~v~vi 112 (293)
T PLN02917 46 SRVVGIIPARFASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVV-ATDDERIAECCRGF------GADVI 112 (293)
T ss_pred CcEEEEEecCCCCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHHHc------CCEEE
Confidence 45789999999999995 6999999999999999999998865444333 35567888887541 23332
Q ss_pred EEeCCCccCHHHHHHHHHhccccc--CC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccc
Q 007143 107 TIESHNIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQS 181 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~ 181 (616)
...+....|++.+...+ ..+. .| +|++.||+ +....|..+++.+++. ......|+++.- .+. ...
T Consensus 113 ~~~~~~~~GT~~~~~a~---~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~---~~~iv~t~~~~~-~~~---~~~ 182 (293)
T PLN02917 113 MTSESCRNGTERCNEAL---KKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA---PDAVFSTAVTSL-KPE---DAS 182 (293)
T ss_pred eCCcccCCchHHHHHHH---HhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc---CCceEEEEeeec-CHH---Hhc
Confidence 22223445777764322 2333 34 89999999 6677899999988542 112333333321 211 233
Q ss_pred ccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhc--CCChhhHHH
Q 007143 182 RLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTD--NFDYQHLRR 259 (616)
Q Consensus 182 r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~d--nfd~q~lr~ 259 (616)
.|| ...++.| +++++++|...+-+..+. .+.+ . ..-.+.+.|||.+..+.|..|.. +-..| +.
T Consensus 183 ~yg--rv~vv~~-~~g~alyfsr~~Ipe~kd--~~~~------~--~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e--~e 247 (293)
T PLN02917 183 DPN--RVKCVVD-NQGYAIYFSRGLIPYNKS--GKVN------P--QFPYLLHLGIQSYDAKFLKIYPELPPTPLQ--LE 247 (293)
T ss_pred CCC--ceEEEEC-CCCeEEEeecCcCCcCCC--cccc------c--ccceEEEEEEEEeCHHHHHHHHcCCCCccc--ch
Confidence 444 2223455 367877766432111110 0000 0 01135689999999999997753 11111 12
Q ss_pred HhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 260 HFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 260 dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
-++..+. -...|.+|.+...+ .-...|+|+.++..+.+-+
T Consensus 248 ~yLtdl~-~le~G~~i~~~~~~-~~~~GVnt~~dL~~ae~~~ 287 (293)
T PLN02917 248 EDLEQLK-VLENGYKMKVIKVD-HEAHGVDTPEDVEKIEALM 287 (293)
T ss_pred hccHHHH-HHhCCCceEEEEeC-CCCCCCCCHHHHHHHHHHH
Confidence 3334433 12367789888775 4456899999998887654
No 99
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.40 E-value=3.2e-12 Score=129.74 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=75.6
Q ss_pred ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec-------e
Q 007143 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG-------S 380 (616)
Q Consensus 321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~-------s 380 (616)
+....+++.++.++.|++.+.|.+++.||+++.|++++.|+ .+.||++|.|+++|+|.. +
T Consensus 23 ~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t 102 (255)
T PRK12461 23 FAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRNVIREGVTIHRGTKGGGVT 102 (255)
T ss_pred CCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCceEECCccEEecCcccCCcE
Confidence 44455667777777777777787888888888888888885 467999999999999963 3
Q ss_pred EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 381 YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 381 ~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
+|++++.+.++++| .+|.||++|+|+.++.|..+++||++|.||.++.|.++++|+...
T Consensus 103 ~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~a 162 (255)
T PRK12461 103 RIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGALA 162 (255)
T ss_pred EEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCCc
Confidence 44444444444444 245555555555555555455555555555555544444444433
No 100
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.39 E-value=3.9e-12 Score=135.27 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=78.4
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceE
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSY 381 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~ 381 (616)
....++.++.++.|++++.|++++.||++|.|+++++|. ++.||++|.|+++|+|. +++
T Consensus 126 ~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~ 205 (343)
T PRK00892 126 VIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVI 205 (343)
T ss_pred EEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEE
Confidence 334455666666666667777777777777777777775 56699999999999994 478
Q ss_pred ECCCCEECCCcEEe-----ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143 382 IWDNVIIEDGCELR-----HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436 (616)
Q Consensus 382 I~~~v~Ig~~~~I~-----~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~ 436 (616)
|++++.||+++.|. +++||+++.|+..+.|+++|.||+++.|++++.|..+++|+
T Consensus 206 Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG 265 (343)
T PRK00892 206 IGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIG 265 (343)
T ss_pred ECCCcEECCCcEEecCccccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEEC
Confidence 99999999999884 46677666666666666666666555555444433333333
No 101
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.38 E-value=1e-11 Score=118.45 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=70.6
Q ss_pred cceEEcCCcEECCCCEECC----CcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEec-eEECCCCEECCCcEEe
Q 007143 326 RGMYRALEIEQSRSAQVGS----FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR 395 (616)
Q Consensus 326 ~~i~~~~~v~i~~~~~I~~----~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~ 395 (616)
+++++++++.|++++.|+. ++.||++|.|++++.|. .+.||++|.|++++.|.+ ++|+++|.||.+|.|.
T Consensus 19 ~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~ 98 (167)
T cd00710 19 GDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF 98 (167)
T ss_pred eeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE
Confidence 4566666666666666654 35677777777777663 466777777777777754 7777777777777777
Q ss_pred ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
++.||++++||.++.|. ++.|+++..|++++++...+....
T Consensus 99 ~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~ 139 (167)
T cd00710 99 NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADA 139 (167)
T ss_pred CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCcccc
Confidence 66666666666666663 455555555555555554444433
No 102
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.38 E-value=5.5e-12 Score=139.02 Aligned_cols=111 Identities=18% Similarity=0.303 Sum_probs=73.7
Q ss_pred ceEEcCCcEECCCCEECC-----CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCC-----------EEC
Q 007143 327 GMYRALEIEQSRSAQVGS-----FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNV-----------IIE 389 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~-----~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v-----------~Ig 389 (616)
++++++++.|+++|.|++ +++||++|+|++++.|. +++||++|.||++|.|.++.|++++ .||
T Consensus 280 ~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig 359 (446)
T PRK14353 280 NVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIG 359 (446)
T ss_pred CCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEc
Confidence 344444444444444443 57788888888888886 7888888888888877665555432 445
Q ss_pred CCcEEec-eEE-------CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 390 DGCELRH-VIV-------CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 390 ~~~~I~~-siI-------g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
++|.|.. +++ ..++.||++++|+.+++|.++++||++++|+++++|..
T Consensus 360 ~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~ 415 (446)
T PRK14353 360 AGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITE 415 (446)
T ss_pred CCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECc
Confidence 5555532 222 23577777777777777777788888888888887765
No 103
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.38 E-value=9.9e-12 Score=118.52 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=87.5
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEe-----ceEECCCCEECCCcEEec-e
Q 007143 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIE-----GSYIWDNVIIEDGCELRH-V 397 (616)
Q Consensus 329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~-----~s~I~~~v~Ig~~~~I~~-s 397 (616)
.+++++.|++++.|.+++.||++|.|++++.|. ++.||++|.|++++.|. .++|++++.|+.++.|.+ +
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~ 83 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPA 83 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCE
Confidence 378888899999998899999999999999985 37899999999999995 588999999999999986 9
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (616)
Q Consensus 398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v 429 (616)
+||++|+||.++.|. +++||++|.||.++.|
T Consensus 84 ~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i 114 (167)
T cd00710 84 YIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVV 114 (167)
T ss_pred EECCCCEECCCCEEE-CCEECCCCEEcCCCEE
Confidence 999999999998886 6778888877777765
No 104
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.37 E-value=7.5e-12 Score=118.00 Aligned_cols=110 Identities=25% Similarity=0.369 Sum_probs=85.6
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~ 110 (616)
|||||+|.++||+. ||+|+|++|+|||+|+++.+..+|+++|+|++++ +++.+++... .+.++..
T Consensus 1 ~vILa~G~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~--------~~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAGKSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY--------GIKVVVD 65 (160)
T ss_dssp EEEEESSSCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT--------TSEEEE-
T ss_pred CEEECCcCcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc--------CceEEEe
Confidence 79999999999984 9999999999999999999999999999999987 5666666442 2445544
Q ss_pred C-CccCHHHHHHHHHhccc-ccCCEEEEeCce--ecchhHHHHHHHHHHh
Q 007143 111 H-NIISAGDALRLIYEQNV-IHGDFVLISGDT--VSNMLLTQALQEHKER 156 (616)
Q Consensus 111 ~-~~~~~gdalr~~~~~~~-i~~dfLlv~gD~--i~~~~l~~~l~~h~~~ 156 (616)
+ ...|...++...... + -.+.|++++||+ +....+..+++.+.+.
T Consensus 66 ~~~~~G~~~sl~~a~~~-~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQ-LPSSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp STSSCSHHHHHHHHHHT-STTSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred ccccCChHHHHHHHHHh-cccCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 3 347888888865433 2 234599999999 4566889999988754
No 105
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.37 E-value=1.2e-11 Score=117.42 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=75.0
Q ss_pred eecceEEcCCcEECCCCEEC---CCcEECCCCEECCCCEEec-----------eEECCCCEECCCCEEeceEECCCCEEC
Q 007143 324 ERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD-----------SVIGEGCTIGSNVLIEGSYIWDNVIIE 389 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~-----------s~IG~~~~Ig~~~~I~~s~I~~~v~Ig 389 (616)
..+++++++++.|++++.|. +.+.||++|.|+++++|.+ +.||++|.|+.++.|.+++|+++|.||
T Consensus 14 i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig 93 (164)
T cd04646 14 IRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFE 93 (164)
T ss_pred EcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEe
Confidence 44788999999999999995 5689999999999999964 457888888888888777777777777
Q ss_pred CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143 390 DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433 (616)
Q Consensus 390 ~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~ 433 (616)
.+|.| ++++.||++++|+++++|..++.|++++++..+.
T Consensus 94 ~~a~I-----~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~ 132 (164)
T cd04646 94 SKSFV-----GKNVIITDGCIIGAGCKLPSSEILPENTVIYGAD 132 (164)
T ss_pred CCCEE-----CCCCEECCCCEEeCCeEECCCcEECCCeEEeCCc
Confidence 76665 4455555555555555555555555444444433
No 106
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.36 E-value=6.7e-12 Score=126.12 Aligned_cols=108 Identities=28% Similarity=0.338 Sum_probs=65.6
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe---------ceEECCCCEECCCc
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE---------GSYIWDNVIIEDGC 392 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~---------~s~I~~~v~Ig~~~ 392 (616)
..+.++++++++.|.++ .|..++.||++|.|+.+++|+ +++||++|+|+.++.|. +++|+++|.||.+|
T Consensus 108 ~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~a 186 (269)
T TIGR00965 108 AVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARS 186 (269)
T ss_pred EECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCCC
Confidence 33455556666666543 444556677777777777774 57777777777777663 35677777777666
Q ss_pred EEeceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEEc
Q 007143 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVS 436 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~v~~~~~v~ 436 (616)
.| ..+++||++++|+.|++|+.+++|++.. .||++++|.
T Consensus 187 ~I-----~~GV~IG~gavIGaGavI~~~~~I~~~~~g~v~~~~vp~~svv~ 232 (269)
T TIGR00965 187 EI-----VEGVIVEEGSVISMGVFIGQSTKIYDRETGEIHYGRVPAGSVVV 232 (269)
T ss_pred EE-----cCCCEECCCCEEeCCCEECCCCEEecccCCceeeeecCCCcEEe
Confidence 66 4445555555555555555555554432 367777774
No 107
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.35 E-value=5.9e-12 Score=127.68 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=51.5
Q ss_pred eEECCCCEECCCCEEec-eEECCCCEECCCcEEe---------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143 363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELR---------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~---------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~ 432 (616)
+.||++|+|+.++.|.+ +.|+++|+|+.++.|. +++|+++|+||.+++|..|++||++++|+++++|.++
T Consensus 133 a~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~g 212 (272)
T PRK11830 133 AYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQS 212 (272)
T ss_pred CEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCC
Confidence 34444444444444432 3555555555555443 4788888888888888888888888888888888888
Q ss_pred CEEcc
Q 007143 433 SKVSL 437 (616)
Q Consensus 433 ~~v~~ 437 (616)
++|..
T Consensus 213 t~I~~ 217 (272)
T PRK11830 213 TKIYD 217 (272)
T ss_pred eEECc
Confidence 88875
No 108
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.35 E-value=2.1e-11 Score=114.84 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=75.6
Q ss_pred eecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEE-----eceEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143 324 ERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~ 395 (616)
..+++++++++.|+++|.|.+ ++.||++|.|+++|.| .+++||++|.|++++.|.+++|++++.|+.++.|
T Consensus 15 i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I- 93 (155)
T cd04745 15 LIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNAVV- 93 (155)
T ss_pred EEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCCEE-
Confidence 456788999999999998875 5899999999999999 5699999999999999999999888888877766
Q ss_pred ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+++++|+++++|++ +++|.++..|++++++..
T Consensus 94 ----~~g~~Ig~~~~Ig~------~s~v~~~~~i~~~~~v~G 125 (155)
T cd04745 94 ----MDGAVIGEESIVGA------MAFVKAGTVIPPRSLIAG 125 (155)
T ss_pred ----eCCCEECCCCEECC------CCEeCCCCEeCCCCEEec
Confidence 33344444433333 333344444444444433
No 109
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.35 E-value=7e-12 Score=138.27 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=54.7
Q ss_pred eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECC
Q 007143 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~ 401 (616)
..+++++++++.|+++|.| .++.||++|.|++++.|.+++||++|.||+++.|. +++|+++|.|+.+|.+.+++|++
T Consensus 276 i~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~ 353 (451)
T TIGR01173 276 LEGKVKIGDDVVIGPGCVI-KNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGK 353 (451)
T ss_pred EeCceEECCCCEECCCcEE-eeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECC
Confidence 3455667777777777776 36778888888888888788888888888888776 57777777777766655444443
No 110
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.33 E-value=2.7e-11 Score=111.94 Aligned_cols=105 Identities=28% Similarity=0.359 Sum_probs=66.8
Q ss_pred ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCcEE
Q 007143 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGCEL 394 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~~I 394 (616)
.+++++++++.|.+.+.|..++.||+++.|++++.|. +++||++|.|+.++.|.+ ++|++++.|+.++.|
T Consensus 11 ~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I 90 (139)
T cd03350 11 RDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEV 90 (139)
T ss_pred CCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEE
Confidence 3455566666666666666666777777777777774 677788888877777753 556666666666555
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
..+++||+++.|+++++|.++++|+++ +++++|..
T Consensus 91 -----~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~ 125 (139)
T cd03350 91 -----VEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYG 125 (139)
T ss_pred -----CCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEec
Confidence 555555555555555555556666555 55555543
No 111
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.33 E-value=1.8e-11 Score=119.49 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=31.2
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (616)
++.++.+++.+.|++++.||+++.|+.++.+.+++||+++.|++.+.|.++.|++++.||.++.+
T Consensus 70 ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i~~~~Ig~~~~ig~~~~~ 134 (193)
T cd03353 70 IGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYLGDAEIGEGVNIGAGTIT 134 (193)
T ss_pred ECCCCEECCccEEcCccEECCCCEECCcEEEecceEcCCCEecccceecccEECCCCEEcCceEE
Confidence 44444444444444444444444444444444444455555544444444555555555555444
No 112
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.32 E-value=5e-11 Score=112.11 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=76.9
Q ss_pred eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEec-----eEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143 324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~ 395 (616)
..+++.+++++.|++++.|.+. +.||++|.|+++|.|.. ++||++|.|+++|+|.+++|++++.|+.++.+.
T Consensus 15 i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~ 94 (154)
T cd04650 15 VIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGAILL 94 (154)
T ss_pred EEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCCEEe
Confidence 4577889999999999988765 79999999999999964 899999999999999999999999999998873
Q ss_pred ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143 396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (616)
Q Consensus 396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (616)
.++.||++++|++++.+..+..|+++.+
T Consensus 95 -----~~~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 95 -----NGAKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred -----CCCEECCCCEECCCCEECCCcEeCCCCE
Confidence 3344444444444444444444444444
No 113
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.32 E-value=3.8e-11 Score=118.25 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=40.6
Q ss_pred cceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe--------------------ceEECC
Q 007143 326 RGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE--------------------GSYIWD 384 (616)
Q Consensus 326 ~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~--------------------~s~I~~ 384 (616)
..+.+++++.|++++.|++++.||++|.|+++++|. +++||++|.|+++++|. .+.|++
T Consensus 18 ~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~Ig~ 97 (205)
T cd03352 18 EGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWVKIPQLGGVIIGD 97 (205)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEEEcCCcceEEECC
Confidence 344455555555555555566666666666666664 36666666666666662 355666
Q ss_pred CCEECCCcEE
Q 007143 385 NVIIEDGCEL 394 (616)
Q Consensus 385 ~v~Ig~~~~I 394 (616)
++.|+.++.+
T Consensus 98 ~~~Ig~~~~i 107 (205)
T cd03352 98 DVEIGANTTI 107 (205)
T ss_pred CEEECCCCEE
Confidence 6666665555
No 114
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=4.8e-11 Score=113.13 Aligned_cols=100 Identities=20% Similarity=0.183 Sum_probs=74.1
Q ss_pred ecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEec-------------eEECCCCEECCCCEEeceEECCCCEE
Q 007143 325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-------------SVIGEGCTIGSNVLIEGSYIWDNVII 388 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-------------s~IG~~~~Ig~~~~I~~s~I~~~v~I 388 (616)
..+++++.++.|+++|.|.++ +.||++|.|+++++|.. ++||++|.|++++.|.+++|++++.|
T Consensus 19 ~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~I 98 (161)
T cd03359 19 SQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHI 98 (161)
T ss_pred CCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEE
Confidence 358889999999999999865 69999999999999963 47999999999999999888888888
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (616)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v 429 (616)
+.++.| ++++.|+++++|+++++|..+++|++++++
T Consensus 99 g~~~~I-----g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv 134 (161)
T cd03359 99 GKNCVI-----GRRCIIKDCVKILDGTVVPPDTVIPPYSVV 134 (161)
T ss_pred CCCCEE-----cCCCEECCCcEECCCCEECCCCEeCCCCEE
Confidence 776655 555555555555544444444444444433
No 115
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.31 E-value=3.3e-11 Score=117.64 Aligned_cols=90 Identities=33% Similarity=0.484 Sum_probs=53.5
Q ss_pred CEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCE
Q 007143 340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVV 416 (616)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~v 416 (616)
+.|++++.||+++.|+++++|+ +++||++|.|++++.|. ++.|+++++|+.++.|. ++.|+++++||.+++|.++++
T Consensus 94 a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ 173 (201)
T TIGR03570 94 AIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVT 173 (201)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCE
Confidence 3333444444444444444443 35666666666666664 46666777777776665 466666666666666666666
Q ss_pred ECCCcEECCCCEE
Q 007143 417 LSFKVVIGERFVV 429 (616)
Q Consensus 417 Ig~~v~Ig~~~~v 429 (616)
|+++++|+++++|
T Consensus 174 i~~~~~i~~~~~v 186 (201)
T TIGR03570 174 IGAGAIVGAGAVV 186 (201)
T ss_pred ECCCCEECCCCEE
Confidence 6666666666653
No 116
>PLN02296 carbonate dehydratase
Probab=99.30 E-value=2.7e-11 Score=123.37 Aligned_cols=100 Identities=22% Similarity=0.307 Sum_probs=75.3
Q ss_pred eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----------ceEECCCCEECCCCEEeceEECCCCEEC
Q 007143 324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVIIE 389 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig 389 (616)
..++++++.++.|.++|.|.+. +.||++|.|+++|+|. +++||++|.||++|+|++++|+++|.||
T Consensus 67 V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~v~IG 146 (269)
T PLN02296 67 VIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFVG 146 (269)
T ss_pred EEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCCcEEC
Confidence 4467889999999999998765 4999999999999994 6899999999999999888888888887
Q ss_pred CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143 390 DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (616)
Q Consensus 390 ~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (616)
.+++| .+++.|++++.|++|++|..+++|+++++
T Consensus 147 ~ga~I-----~~gv~Ig~~a~IgagSvV~~~~~I~~~~~ 180 (269)
T PLN02296 147 MGATL-----LDGVVVEKHAMVAAGALVRQNTRIPSGEV 180 (269)
T ss_pred CCcEE-----CCCeEECCCCEECCCCEEecCCEeCCCeE
Confidence 77666 44555555555555444444444444443
No 117
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.30 E-value=3.3e-11 Score=117.16 Aligned_cols=100 Identities=13% Similarity=0.240 Sum_probs=75.9
Q ss_pred eeecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEE-----eceEECCCCEECCCCEEeceEECCCCEECCCcEE
Q 007143 323 LERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL 394 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I-----~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I 394 (616)
...++++++.++.|.++|.|.+ .++||++|.|+++|+| .+|+||++|.||+++.|++|+|++++.||.++.|
T Consensus 22 ~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I 101 (192)
T TIGR02287 22 VLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVV 101 (192)
T ss_pred EEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCccc
Confidence 3457889999999999999964 5899999999999999 4699999999999999999999999999888777
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427 (616)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (616)
.+++.||+++.|+++++|..++.|.+++
T Consensus 102 -----~~g~~IG~~s~Vgags~V~~~~~ip~~~ 129 (192)
T TIGR02287 102 -----MDGAVIGENSIVAASAFVKAGAEMPAQY 129 (192)
T ss_pred -----CCCeEECCCCEEcCCCEECCCCEECCCe
Confidence 4444444444444444444444444333
No 118
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.30 E-value=2e-11 Score=101.87 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=73.5
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~ 409 (616)
+++++.|++++.|. ++.||+++.|++++.|.+++|+++|.|+++|.|.+++|++++.|++++++.+|+|++++.|++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 57788899999995 79999999999999999999999999999999999999999999999999999999999888764
No 119
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.30 E-value=3.9e-11 Score=109.59 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=59.0
Q ss_pred cEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEE-eceEECCCCEECCCcEEe---------ceEECCC
Q 007143 334 IEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELR---------HVIVCDG 402 (616)
Q Consensus 334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~---------~siIg~~ 402 (616)
+.+.+.+.|...+.||+++.|.+++.|. ++.||++|.|.. +| .+++|+++|.||++|.|. ...||++
T Consensus 2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~ 79 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKR 79 (147)
T ss_pred eEecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCC
Confidence 3455555665566666666666666553 555566655541 22 134555555555555554 1456666
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
|+||.++.| ++.||++++||+|++|.++++|..
T Consensus 80 ~~IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i~~ 112 (147)
T cd04649 80 CLLGANSGI--GISLGDNCIVEAGLYVTAGTKVTL 112 (147)
T ss_pred CEECCCCEE--eEEECCCCEECCCCEEeCCeEEEE
Confidence 666666666 466777777777777777666654
No 120
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=5.5e-12 Score=136.52 Aligned_cols=92 Identities=28% Similarity=0.370 Sum_probs=79.6
Q ss_pred ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCc
Q 007143 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDGV 403 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~v 403 (616)
..++.+|.++.|+.++.| .|++||.||.||.+++|.+|+||.+|+||+||+|++|+||++|.|+++|++ .+|+||.++
T Consensus 331 ~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~~V 409 (673)
T KOG1461|consen 331 GANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGFGV 409 (673)
T ss_pred cceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEeeee
Confidence 456778888888888888 899999999999999999999999999999999999999999999999999 457777777
Q ss_pred EECCCCEECCCCEE
Q 007143 404 IMKAGAVLKPGVVL 417 (616)
Q Consensus 404 ~Ig~~~~I~~g~vI 417 (616)
+||.+-++..+++|
T Consensus 410 Vv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 410 VVGRNFVLPKNSKV 423 (673)
T ss_pred EeCCCccccccccc
Confidence 77666666665444
No 121
>PLN02472 uncharacterized protein
Probab=99.29 E-value=4.3e-11 Score=120.36 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=79.7
Q ss_pred eeecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----------ceEECCCCEECCCCEEeceEECCCCEE
Q 007143 323 LERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----------DSVIGEGCTIGSNVLIEGSYIWDNVII 388 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----------~s~IG~~~~Ig~~~~I~~s~I~~~v~I 388 (616)
...+.++++.++.|..+++|.++ +.||.+|.|+++|+|+ +++||++|.||++|+|.+|+|+++|.|
T Consensus 73 ~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~I 152 (246)
T PLN02472 73 VLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECII 152 (246)
T ss_pred EEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEE
Confidence 44567888888888888887654 7889999999999984 588999999999999988888888888
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
|.+|.| . ++++|+.+|+|+.+++|.++..|+++.++...|
T Consensus 153 G~~svI-----~------~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~P 192 (246)
T PLN02472 153 GQHSIL-----M------EGSLVETHSILEAGSVLPPGRRIPTGELWAGNP 192 (246)
T ss_pred CCCCEE-----C------CCCEECCCCEECCCCEECCCCEeCCCCEEEecC
Confidence 776654 3 444555555555666666677777777776654
No 122
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=2e-11 Score=101.59 Aligned_cols=75 Identities=29% Similarity=0.314 Sum_probs=53.3
Q ss_pred CCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEEC
Q 007143 350 YGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIG 424 (616)
Q Consensus 350 ~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig 424 (616)
+++.|++++.| .+++||++|.||++|+|.+++++++++|++++.|.++++++++.|++++.+..+++|+++++|+
T Consensus 4 ~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 4 PSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred CCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 33344444444 2456777777777777778888888888888888888888888888887777667777777665
No 123
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.29 E-value=5e-11 Score=115.33 Aligned_cols=67 Identities=31% Similarity=0.452 Sum_probs=38.7
Q ss_pred eEECCCCEECCCCEEe-ceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143 363 SVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v 429 (616)
+.||++|.|++++.|. ++.|++++.|+.++.+. +++||++|+||.++.|.++++|+++++|+++++|
T Consensus 115 ~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~~v~~~~~v 183 (197)
T cd03360 115 ARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGAIIGAGAVV 183 (197)
T ss_pred CEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3455555555555552 45566666666666653 3555666666666666666666666655555554
No 124
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=3.3e-11 Score=133.32 Aligned_cols=109 Identities=37% Similarity=0.431 Sum_probs=90.0
Q ss_pred cEECCCC-EECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEE
Q 007143 334 IEQSRSA-QVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVL 411 (616)
Q Consensus 334 v~i~~~~-~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I 411 (616)
..+++.+ .|++++.||++|.|+++|.|. +++||++|.|+++|+|.+|+||++|+|+.+|+|.+++|++++.||++++|
T Consensus 256 ~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i 335 (459)
T PRK14355 256 TLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHL 335 (459)
T ss_pred EEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEE
Confidence 3455553 577778888888888888885 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCEECCCcEECCCC-----EECCCCEEccccCCC
Q 007143 412 KPGVVLSFKVVIGERF-----VVPAHSKVSLLQQPT 442 (616)
Q Consensus 412 ~~g~vIg~~v~Ig~~~-----~v~~~~~v~~~~~~~ 442 (616)
.++++|+++++||+++ .|+.++.+...++.+
T Consensus 336 ~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ig 371 (459)
T PRK14355 336 RPGTELSAHVKIGNFVETKKIVMGEGSKASHLTYLG 371 (459)
T ss_pred CCCCEeCCCCEECCCccccCCEECCCceeeeecccc
Confidence 9999999999998875 355666665555444
No 125
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.5e-11 Score=134.13 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=55.4
Q ss_pred ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECC
Q 007143 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCD 401 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~ 401 (616)
.+++++++++.|+++|.| .+++||++|.|++++.|.+++||++|.||++|+|. +++|+++++||.++.+.+++|++
T Consensus 285 ~~~~~ig~~~~I~~~~~i-~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~ 361 (456)
T PRK14356 285 YGASRIARGAVIHSHCWL-RDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGK 361 (456)
T ss_pred eCceEECCCCEECCCeEE-EeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecC
Confidence 356777888888777777 46778888888888877778888888888887775 67777777777776665544443
No 126
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.27 E-value=1.9e-11 Score=118.51 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=84.4
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEe-------------ceEECCCCEE
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIE-------------GSYIWDNVII 388 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~I 388 (616)
...+..-++++|.|++.|.|++++.||++|.|+++++| +.+.||++++|-+.+.|+ ..+||++++|
T Consensus 11 iIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~I 90 (260)
T COG1043 11 IIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTI 90 (260)
T ss_pred eeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeE
Confidence 34455567777888888888888888888888888888 488899999998888886 3578999999
Q ss_pred CCCcEEe--------ceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143 389 EDGCELR--------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436 (616)
Q Consensus 389 g~~~~I~--------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~ 436 (616)
.++++|. -+.||+++++..+++|...|+||++|++..++++.-...|+
T Consensus 91 RE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~ig 146 (260)
T COG1043 91 REFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVG 146 (260)
T ss_pred eeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEEC
Confidence 8888884 26778777777777777777777776666666544443333
No 127
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.27 E-value=3.2e-11 Score=99.97 Aligned_cols=77 Identities=27% Similarity=0.430 Sum_probs=68.5
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec-eEECCCcEEC
Q 007143 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK 406 (616)
Q Consensus 329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig 406 (616)
|+++++.|++++.|.+ +.||++|.|++++.|.+++|+++|.|+++|.|.+++|++++.|+.++.+.+ ++|++++.|+
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~ 78 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVE 78 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEEC
Confidence 5788889999999976 999999999999999999999999999999999999999999999999876 7777776665
No 128
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.26 E-value=3.4e-11 Score=105.54 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=52.4
Q ss_pred CEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (616)
Q Consensus 352 ~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~ 431 (616)
+.|++++.|.+++||++|.|+ ++.|.+|+||+++.|+++|+|.+++|++++.||.++.|. +++|++++.|++++.|.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~-~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIR-RAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEE-eEEECCCCEECCCCEECC
Confidence 345556666666677777776 677777777777777777777777777777777777764 566666666666655554
Q ss_pred C
Q 007143 432 H 432 (616)
Q Consensus 432 ~ 432 (616)
.
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
Confidence 3
No 129
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.26 E-value=3.5e-11 Score=112.00 Aligned_cols=109 Identities=24% Similarity=0.317 Sum_probs=85.3
Q ss_pred eEEEEEeCCCCCCCC-CCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 29 LQAILLADSFTTKFR-PITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 29 l~aVILA~g~~~R~~-PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
|.+||+|+|.|+||. | -|||++++|+|||+|+++.|.+ .+.+|++.++.|...++.|+... + +.+
T Consensus 1 m~~iiMAGGrGtRmg~~-----EKPlleV~GkpLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~------g--v~v 66 (177)
T COG2266 1 MMAIIMAGGRGTRMGRP-----EKPLLEVCGKPLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESV------G--VKV 66 (177)
T ss_pred CceEEecCCcccccCCC-----cCcchhhCCccHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhc------C--ceE
Confidence 579999999999999 5 7999999999999999999999 89999999999999999999762 2 556
Q ss_pred EeCCCccCHHHHHHHHHhcccccCCEEEEeCce-ec-chhHHHHHHHHH
Q 007143 108 IESHNIISAGDALRLIYEQNVIHGDFVLISGDT-VS-NMLLTQALQEHK 154 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~-i~-~~~l~~~l~~h~ 154 (616)
+..+...-..|.-.. ...+..+||++++|+ +. +..|..+++.+.
T Consensus 67 i~tpG~GYv~Dl~~a---l~~l~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 67 IETPGEGYVEDLRFA---LESLGTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred EEcCCCChHHHHHHH---HHhcCCceEEEecccccCCHHHHHHHHHHHh
Confidence 654433334444332 344667999999999 33 446677776655
No 130
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.25 E-value=5e-11 Score=120.91 Aligned_cols=106 Identities=27% Similarity=0.288 Sum_probs=64.1
Q ss_pred cceEEcCCcEECCCCEEC-----CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECC
Q 007143 326 RGMYRALEIEQSRSAQVG-----SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED 390 (616)
Q Consensus 326 ~~i~~~~~v~i~~~~~I~-----~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~ 390 (616)
+++|++.++.|++++.|. .++.||++|.|+.++.|+ +++||++|+|+.++.|.+ ++|+++|.||.
T Consensus 108 p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa 187 (272)
T PRK11830 108 PGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGA 187 (272)
T ss_pred CCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECC
Confidence 344555555555555443 455666777777776665 457777777777777653 67777777777
Q ss_pred CcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC-------EECCCCEEc
Q 007143 391 GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF-------VVPAHSKVS 436 (616)
Q Consensus 391 ~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~-------~v~~~~~v~ 436 (616)
+|.| ..+++||++++|++|++|+.++.|++.+ .||++++|.
T Consensus 188 ~s~I-----~~Gv~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~svvv 235 (272)
T PRK11830 188 RSEV-----VEGVIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGSVVV 235 (272)
T ss_pred CCEE-----cCCCEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCcEEe
Confidence 7766 4444444444444445555555555432 377777775
No 131
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.25 E-value=4.8e-10 Score=113.16 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=130.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~ 110 (616)
+||+|+|.|+||. +|+|+|++|+|||.|+++.+..+++++|+|++.. +.+.+++... ++++.....
T Consensus 2 ~iIpA~g~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~~~------g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARLASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATDD--ESVAQTCQKF------GIEVCMTSK 67 (238)
T ss_pred EEEecCCCCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHHHc------CCEEEEeCC
Confidence 7999999999994 7999999999999999999999999999888753 5567666542 233222112
Q ss_pred CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCc
Q 007143 111 HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDE 187 (616)
Q Consensus 111 ~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~ 187 (616)
....|+......+.....-..+ ++++.||. +....+..+++.+++. +...+|.+.+...+. ..+..+.
T Consensus 68 ~~~~Gt~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~----~~~~a~~~~~~~d~~-----~~~~p~~ 138 (238)
T TIGR00466 68 HHNSGTERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK----NVPMAALAVKIHDAE-----EAFNPNA 138 (238)
T ss_pred CCCChhHHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC----CCCEEEEeeecCCHH-----HccCCCc
Confidence 2233433333322211111335 78899999 6667889999987532 122334443332211 1111112
Q ss_pred eEEEEeCCCCeEEEeeecCCCCCcceEeehHhhh-cCCceEEEeccccceeEeeCHhHHhhhhcCC--ChhhHHHHhhhh
Q 007143 188 LFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLA-ENPSISLHNDKQDCYIDICSPEVLSLFTDNF--DYQHLRRHFVKG 264 (616)
Q Consensus 188 ~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~-~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnf--d~q~lr~dfv~~ 264 (616)
.-++.| ..++.++|...+-+..+. .+.. ..|.. ..-+...|||-++.++|..|..-- .++... -+ .
T Consensus 139 vk~v~~-~~g~alyfsr~~ip~~R~-----~~~~~~tpq~--~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e--~l-e 207 (238)
T TIGR00466 139 VKVVLD-SQGYALYFSRSLIPFDRD-----FFAKRQTPVG--DNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIE--KL-E 207 (238)
T ss_pred eEEEeC-CCCeEEEecCCCCCCCCC-----cccccccccc--cceeEEEEEEeCCHHHHHHHHhCCCCcccccc--hh-H
Confidence 223335 467888876653221111 0100 11111 112456899999999999886421 111110 00 0
Q ss_pred hhhccccCceEEEEEccccchhhccChhhH
Q 007143 265 LLLDDIMGYKIFTHEIHSSYAARIDNYRSY 294 (616)
Q Consensus 265 ~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY 294 (616)
.|.-...|.+|++...+..-...|+|++++
T Consensus 208 qlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 208 QLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred HHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 111123788999887752213478888764
No 132
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.25 E-value=1.1e-10 Score=112.93 Aligned_cols=113 Identities=17% Similarity=0.295 Sum_probs=84.7
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES 110 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~ 110 (616)
+||||+|.|+||++ ||+|+|++|+|||+|+++.+.+.++++|+|++++..+.+.+.+.. ...+.++..
T Consensus 2 ~iIla~G~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~-------~~~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAGLSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLAN-------HSNITLVHN 69 (188)
T ss_pred eEEECCCCcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhcc-------CCCeEEEEC
Confidence 79999999999985 999999999999999999999999999999999876665444422 123555544
Q ss_pred CC-ccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143 111 HN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (616)
Q Consensus 111 ~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~ 156 (616)
.. ..|.+.+++.... .....+ ||++.||+ +....++.+++.+...
T Consensus 70 ~~~~~g~~~si~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred cChhcCHHHHHHHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 33 2477777775433 122334 99999998 5566888999887653
No 133
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.24 E-value=6.3e-11 Score=98.59 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=69.9
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEec-eEECCCcEEC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH-VIVCDGVIMK 406 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~-siIg~~v~Ig 406 (616)
+++++.|++++.|+++++||++|.|++++.|.+++|+++|.|++++.|.++++++++.|++++.+.. ++|++++.|+
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~ 79 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIK 79 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEEC
Confidence 4677889999999999999999999999999999999999999999999999999999999999976 7777766665
No 134
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.24 E-value=1e-10 Score=112.55 Aligned_cols=112 Identities=24% Similarity=0.307 Sum_probs=84.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
+.+||||+|.++||++ ||+|+|++|+|||+|+++.+...++++|+|++++....+.+++.. ..+.++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~--------~~~~~~ 67 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG--------LPVVVV 67 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC--------CCeEEE
Confidence 3589999999999997 999999999999999999999999999999998776666555432 123334
Q ss_pred eCC-CccCHHHHHHHHHhccccc--CC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 109 ESH-NIISAGDALRLIYEQNVIH--GD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 109 ~~~-~~~~~gdalr~~~~~~~i~--~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
..+ ...|.+.+++.... .+. .+ +++++||+ +....+..+++.+..
T Consensus 68 ~~~~~~~G~~~~i~~al~--~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 68 INPDWEEGMSSSLAAGLE--ALPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred eCCChhhCHHHHHHHHHH--hccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 332 33577777775432 233 34 99999999 566788888887664
No 135
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.24 E-value=1.6e-10 Score=108.52 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=67.9
Q ss_pred eecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEec-----eEECCCCEECCCCEEeceEECCCCEECCCcEEe
Q 007143 324 ERRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKISD-----SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR 395 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~~-----s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~ 395 (616)
..++++++.++.|++++.|.++ ++||+++.|+++++|.. ++||++|.|+.+|+|.+++|++++.|+.++.+.
T Consensus 14 i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~ 93 (153)
T cd04645 14 VIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGAIIL 93 (153)
T ss_pred EEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCCEEc
Confidence 3467899999999999998754 69999999999999975 699999999999999999999999999887773
Q ss_pred -ceEECCCcEEC
Q 007143 396 -HVIVCDGVIMK 406 (616)
Q Consensus 396 -~siIg~~v~Ig 406 (616)
+++|+++++|+
T Consensus 94 ~~~~ig~~~~ig 105 (153)
T cd04645 94 DGAVIGKGSIVA 105 (153)
T ss_pred CCCEECCCCEEC
Confidence 33333333333
No 136
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.24 E-value=1.2e-10 Score=109.31 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=78.8
Q ss_pred eeeecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEEe-----ceEECCCCEECCCCEEeceEECCCCEECCCcE
Q 007143 322 KLERRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE 393 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~ 393 (616)
....+.+-++.++.|.++++|.+ ...||++|.|.++++|+ .+.||++|.||+++.|++|+|+++|.||-+++
T Consensus 24 A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~ 103 (176)
T COG0663 24 ATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMGAT 103 (176)
T ss_pred CEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecCce
Confidence 34557788888888888888874 57899999999999994 68999999999999999999999999887776
Q ss_pred EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 394 LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 394 I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
| -++|.||+ +|+||.|+.|-++..+|+++.+...|
T Consensus 104 v-----ldga~IG~------~~iVgAgalV~~~k~~p~~~L~~G~P 138 (176)
T COG0663 104 V-----LDGAVIGD------GSIVGAGALVTPGKEIPGGSLVVGSP 138 (176)
T ss_pred E-----eCCcEECC------CcEEccCCcccCCcCCCCCeEeecCc
Confidence 6 33333333 33333344444445566666655544
No 137
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.23 E-value=1.7e-10 Score=113.65 Aligned_cols=65 Identities=35% Similarity=0.485 Sum_probs=32.2
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEec-eEECCCCEECCCcEE
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCEL 394 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I 394 (616)
+++++.|++.+.|++++.||+++.|++++.| .++.||++|.|+++++|.+ ++|++++.|+++++|
T Consensus 4 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 4 IGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 3444444444445444555555555555544 2445555555555555542 555555555555444
No 138
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.23 E-value=4.9e-11 Score=131.64 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=34.2
Q ss_pred cEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007143 346 TVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA 407 (616)
Q Consensus 346 ~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~ 407 (616)
+.||+++.|++++.|+ +++||++|.||.++.|.+++|++++.|+.++.+.+++||++|.||+
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~ 376 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGA 376 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECc
Confidence 4455666666666664 5666666666666666555555555554444444444444444433
No 139
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.23 E-value=3.4e-11 Score=125.74 Aligned_cols=100 Identities=23% Similarity=0.235 Sum_probs=87.9
Q ss_pred eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEEC
Q 007143 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVC 400 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg 400 (616)
.+.+..+-+++++.|.+++.|.+++.||++|+||++|+|.+|.||+++.|-..++|++|.|++++.||+.++++ ++.|+
T Consensus 263 ~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~ 342 (460)
T COG1207 263 TYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLG 342 (460)
T ss_pred EEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCccc
Confidence 45567778889999999999999999999999999999999999999999999999999999999999999997 68899
Q ss_pred CCcEECCCCEECCCCEECCCcE
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVV 422 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~ 422 (616)
++++||+.+.+. ++.||.+++
T Consensus 343 ~~~hIGNFVEvK-~a~ig~gsK 363 (460)
T COG1207 343 ADVHIGNFVEVK-KATIGKGSK 363 (460)
T ss_pred CCCeEeeeEEEe-cccccCCcc
Confidence 999999888776 566666543
No 140
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.22 E-value=9.7e-11 Score=115.13 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=86.3
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEece-----------------EECCCCEEC
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGS-----------------YIWDNVIIE 389 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s-----------------~I~~~v~Ig 389 (616)
+..+++++.|+++|.| .++.||.+|.|++++.|.+++||++|.|++++.|.+. .+++....+
T Consensus 19 ~~~IG~~~~Ig~~a~I-~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~~~~~~~ 97 (204)
T TIGR03308 19 ESKLGRYTEIGERTRL-REVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYFDDASDD 97 (204)
T ss_pred ccEeCCCcEECCCcEE-eCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccccccccc
Confidence 3678888888888888 4788999999999999999999999999999998632 111111110
Q ss_pred C----CcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143 390 D----GCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 390 ~----~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
. .-...+++||++|+||.+++|.+|++||++++|+++++ |++++++...|
T Consensus 98 ~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~P 155 (204)
T TIGR03308 98 ADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVP 155 (204)
T ss_pred ccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecC
Confidence 0 11236788899999999999999999999999999998 66777776654
No 141
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.22 E-value=1.2e-10 Score=102.08 Aligned_cols=79 Identities=25% Similarity=0.375 Sum_probs=72.2
Q ss_pred cEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECC
Q 007143 334 IEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKP 413 (616)
Q Consensus 334 v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~ 413 (616)
+.|++++.| .+++||++|.|+ ++.|.+|+||++|.|+++|.|.+|+|++++.|+.+|.+.+++|++++.|++++.|.+
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~ 79 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGG 79 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECC
Confidence 356777778 578999999999 999999999999999999999999999999999999999999999999999988886
Q ss_pred C
Q 007143 414 G 414 (616)
Q Consensus 414 g 414 (616)
.
T Consensus 80 ~ 80 (104)
T cd04651 80 D 80 (104)
T ss_pred C
Confidence 5
No 142
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.20 E-value=1e-10 Score=128.35 Aligned_cols=84 Identities=19% Similarity=0.170 Sum_probs=55.6
Q ss_pred CcEECCCCEECCCCEEeceEECCCC----------EECCCCEEeceEECCCCEECCCcEEec--------eEECCCcEEC
Q 007143 345 FTVIGYGTKIGSNSKISDSVIGEGC----------TIGSNVLIEGSYIWDNVIIEDGCELRH--------VIVCDGVIMK 406 (616)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I~~s~IG~~~----------~Ig~~~~I~~s~I~~~v~Ig~~~~I~~--------siIg~~v~Ig 406 (616)
++.||+++.|+++++|.+|+||++| +||+++.|.+|+|+++|.||.++.+.+ ++||++|+||
T Consensus 298 ~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig 377 (430)
T PRK14359 298 NSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIG 377 (430)
T ss_pred CCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceEccccCccCcCCEECCCeEEc
Confidence 4555666666666666555555555 667777788889999999999887742 4666666666
Q ss_pred CCCEECCCCEECCCcEECCCCE
Q 007143 407 AGAVLKPGVVLSFKVVIGERFV 428 (616)
Q Consensus 407 ~~~~I~~g~vIg~~v~Ig~~~~ 428 (616)
.++.|.+++.||++++||+|++
T Consensus 378 ~~~~i~~~~~ig~~~~i~~g~~ 399 (430)
T PRK14359 378 SDTQLVAPVNIEDNVLIAAGST 399 (430)
T ss_pred CCCEEeCCcEECCCCEECCCCE
Confidence 6666665555555555555554
No 143
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.19 E-value=2.4e-10 Score=111.43 Aligned_cols=114 Identities=15% Similarity=0.198 Sum_probs=83.1
Q ss_pred ecceEEcCCcEECCCCEE----CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceE--------ECCCCEEC
Q 007143 325 RRGMYRALEIEQSRSAQV----GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY--------IWDNVIIE 389 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I----~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~--------I~~~v~Ig 389 (616)
..++.+++++.++.+|++ .+.+.||+++.|++++.|. +++||++|.|+.+|.|.+.. .+.+..+.
T Consensus 41 ~~~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~ 120 (192)
T PRK09677 41 DGSINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLP 120 (192)
T ss_pred CCeEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccC
Confidence 467888999999999888 3578899999999999985 68899999999999986421 22222221
Q ss_pred ---CCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEEC----CCCEEccc
Q 007143 390 ---DGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP----AHSKVSLL 438 (616)
Q Consensus 390 ---~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~----~~~~v~~~ 438 (616)
.......++||++|+||.++.|.+|++||++|+||++++|. +++++...
T Consensus 121 ~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~ 176 (192)
T PRK09677 121 PDMRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGN 176 (192)
T ss_pred hhhcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEec
Confidence 12234567788888888888888888888888888887754 45555443
No 144
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.19 E-value=8.6e-11 Score=130.62 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=84.9
Q ss_pred eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEEC
Q 007143 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg 400 (616)
....+++.+++++.|+++|.| .+++||++|.|+++++|.+++||++|.||+++.|. ++.|++++.|+.++.|.+++|+
T Consensus 283 ~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~ 361 (481)
T PRK14358 283 VLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLD 361 (481)
T ss_pred cEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceec
Confidence 344445556666666666666 45678888888888888888888888888888885 7888888888888888888888
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~ 432 (616)
+++.||..+.++ +++||++|.||+++++..+
T Consensus 362 ~~~~ig~~~~~~-~~~ig~~~~ig~~~~i~~~ 392 (481)
T PRK14358 362 AGVKAGHLAYLG-DVTIGAETNVGAGTIVANF 392 (481)
T ss_pred CCcccCceEEEC-CeEEcCCceEcCCEEEeCC
Confidence 888888887776 5888888888888877653
No 145
>PRK10502 putative acyl transferase; Provisional
Probab=99.18 E-value=1.7e-10 Score=111.60 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=74.5
Q ss_pred ceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEEeceEEC
Q 007143 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCELRHVIVC 400 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I~~siIg 400 (616)
...+++++.|++++.|.. ++.||++|.|++++.|. .++||++|.|+++|.|... ...... .........+||
T Consensus 51 ga~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~--~~~~~~~~i~Ig 128 (182)
T PRK10502 51 GAKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDP--HFDLNTAPIVIG 128 (182)
T ss_pred ccccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCC--CcccccCCEEEc
Confidence 456788888888887754 57888888888888885 5778888888887776321 110000 001122456778
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
++|+||.++.|.+|+.||++++||++++ +++++++...|
T Consensus 129 d~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~P 171 (182)
T PRK10502 129 EGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNP 171 (182)
T ss_pred CCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCc
Confidence 8888888888887888888877777776 45666655544
No 146
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.18 E-value=2.7e-10 Score=99.23 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=68.6
Q ss_pred ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCc
Q 007143 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGV 403 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v 403 (616)
.+++++++++.+++++.|.++++||+++.|++++.|. +++||++|.||. .|.+++||+++.++.++.|.+++||+++
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v 86 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWC 86 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCC
Confidence 4578888888888888888888888888888888886 688888888865 5778888888888888887777777777
Q ss_pred EECCCCEEC
Q 007143 404 IMKAGAVLK 412 (616)
Q Consensus 404 ~Ig~~~~I~ 412 (616)
.||+++.+.
T Consensus 87 ~ig~~~~~~ 95 (101)
T cd05635 87 NLGAGTNNS 95 (101)
T ss_pred EECCCceec
Confidence 777776654
No 147
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=1.2e-10 Score=128.83 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=47.6
Q ss_pred eecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEE
Q 007143 324 ERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL 394 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I 394 (616)
..+++.+++++.|+++|.| .++.||++|.|++++.|.+++||++|.||+++.|. ++.|++++.||+++.|
T Consensus 280 i~~~v~ig~~~~I~~~~~i-~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i 350 (456)
T PRK09451 280 IEGNVTLGNRVKIGAGCVL-KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEM 350 (456)
T ss_pred EecCcEECCCCEECCCceE-ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceee
Confidence 3456677777777777777 36777777777777777777777777777777665 5556666555555444
No 148
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.17 E-value=2.1e-10 Score=116.30 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=59.2
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCCEEe-ceE-ECCCCE---ECCCCEEe-ceEECCCCEECCCcEE-ec----eEE
Q 007143 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSV-IGEGCT---IGSNVLIE-GSYIWDNVIIEDGCEL-RH----VIV 399 (616)
Q Consensus 331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~-IG~~~~---Ig~~~~I~-~s~I~~~v~Ig~~~~I-~~----siI 399 (616)
..++.|++.++|..++.||++|.|.++++|. ++. +|.+|. |..+++|+ +|.|++++.| ++++ .+ +.|
T Consensus 176 p~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI--g~tLsGg~~~~V~I 253 (341)
T TIGR03536 176 PKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST--MGTLSGGGNIVISV 253 (341)
T ss_pred cCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE--eEEEeCCCceeEEE
Confidence 3445555555555555555555555555442 232 344444 33333331 2333333333 1111 12 677
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
|++|+||.++.| |..||++|+||+|++|.++|+|..
T Consensus 254 Ge~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~~ 289 (341)
T TIGR03536 254 GEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVAV 289 (341)
T ss_pred CCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEEE
Confidence 888888888888 788888888888888888888876
No 149
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=2.3e-10 Score=127.45 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=55.1
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCC----------------CEECCCCEEe-ceEECCCCEECCCCEEeceEECCC
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYG----------------TKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDN 385 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~----------------~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~ 385 (616)
...++++++.++.|+++|.|. +++||++ +.||+++.|. +++||++|.||.++.+.+++|+++
T Consensus 285 ~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~ 363 (482)
T PRK14352 285 QLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG 363 (482)
T ss_pred EEeecCEECCCCEECCCCEEe-cCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC
Confidence 334556666666666666653 3344443 4444444442 444444444444444444555555
Q ss_pred CEECCCcEEeceEECCCcEECCCCEECC-------CCEECCCcEECCCCEECCCC
Q 007143 386 VIIEDGCELRHVIVCDGVIMKAGAVLKP-------GVVLSFKVVIGERFVVPAHS 433 (616)
Q Consensus 386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~-------g~vIg~~v~Ig~~~~v~~~~ 433 (616)
+.|+..+.+.+++||++|.||.++++.. +++||++|.||.+++|.++.
T Consensus 364 ~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~ 418 (482)
T PRK14352 364 TKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPV 418 (482)
T ss_pred cEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCC
Confidence 5555555555566666666666654431 24444444444444433333
No 150
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.17 E-value=4e-10 Score=109.95 Aligned_cols=97 Identities=12% Similarity=0.222 Sum_probs=69.8
Q ss_pred ecceEEcCCcEECCCCEECCC---cEECCCCEECCCCEEe-----ceEECCCCEECCCCEEeceEECCCCEECCCcEEec
Q 007143 325 RRGMYRALEIEQSRSAQVGSF---TVIGYGTKIGSNSKIS-----DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRH 396 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~---~~Ig~~~~Ig~~~~I~-----~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~ 396 (616)
.++++++.++.|+++|+|.++ +.||.+|.|+++|+|+ +++||++|.||+++.|++++|+++|.||.+++|
T Consensus 26 ~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V-- 103 (196)
T PRK13627 26 IGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVI-- 103 (196)
T ss_pred ECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcCCcc--
Confidence 456778888888888877553 5788888898888884 588999999999999999999999988887666
Q ss_pred eEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143 397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGER 426 (616)
Q Consensus 397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~ 426 (616)
..++.||+++.|+.|++|-.++.+.++
T Consensus 104 ---~~g~~IG~~s~Vgags~V~~~~~ip~~ 130 (196)
T PRK13627 104 ---MDGAVIGEESIVAAMSFVKAGFQGEKR 130 (196)
T ss_pred ---CCCcEECCCCEEcCCCEEeCCcCcCCC
Confidence 444555554444444444444444333
No 151
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.16 E-value=4.3e-10 Score=108.72 Aligned_cols=93 Identities=31% Similarity=0.446 Sum_probs=56.9
Q ss_pred CEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEE
Q 007143 340 AQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVL 417 (616)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vI 417 (616)
+.+.+++.||.++.|+++ ++|+.++.||++|.|. +++|+.++.||++|.| .+++++.++.||++|+|+.+++|
T Consensus 91 ~~i~~~~~ig~~~~i~~~-----~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 165 (197)
T cd03360 91 AVVSPSAVIGEGCVIMAG-----AVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI 165 (197)
T ss_pred eEECCCCEECCCCEEcCC-----CEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 333334444444444433 3556677777776663 6666666666666666 35666666666666666666666
Q ss_pred CCCcEECCCCEECCCCEEcc
Q 007143 418 SFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 418 g~~v~Ig~~~~v~~~~~v~~ 437 (616)
.++++||++++|+++++|..
T Consensus 166 ~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 166 IQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred cCCCEECCCCEECCCCEEcC
Confidence 66666666666666666654
No 152
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.16 E-value=1.1e-09 Score=108.89 Aligned_cols=208 Identities=16% Similarity=0.137 Sum_probs=121.1
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
+.|||||+|.++||. +|+|+|++|+|||+|+++.+..++ +++|+|.+. .+.+.+++.+. +..+.+
T Consensus 2 ~~~iIlA~G~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~~------~~~~~~ 67 (223)
T cd02513 2 ILAIIPARGGSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARKY------GAEVPF 67 (223)
T ss_pred eEEEEecCCCCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHHh------CCCcee
Confidence 579999999999994 599999999999999999999987 788877653 35566555431 121222
Q ss_pred EeC----CCccCHHHHHHHHHhc-ccc---cCCEEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCC
Q 007143 108 IES----HNIISAGDALRLIYEQ-NVI---HGDFVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPI 177 (616)
Q Consensus 108 i~~----~~~~~~gdalr~~~~~-~~i---~~dfLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~ 177 (616)
+.. ....+..++++..... ... .+.|+++.||+ +....+..+++.|+... +..++.+.+....
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~-----~~~~~~~~~~~~~-- 140 (223)
T cd02513 68 LRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEG-----ADSVFSVTEFHRF-- 140 (223)
T ss_pred eCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCC-----CCEEEEEEecCcC--
Confidence 222 1223556666644321 100 12399999999 77789999999987642 2333333333221
Q ss_pred CcccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhH
Q 007143 178 THQSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHL 257 (616)
Q Consensus 178 ~~~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~l 257 (616)
..++ . ..+.+....+.+.+..... ....+ . ....++++|+++.+.+.-..
T Consensus 141 ---~~~~----~-~~~~~~~~~~~~~~~~~~~--~q~~~-~-----------~~~~n~~~y~~~~~~~~~~~-------- 190 (223)
T cd02513 141 ---PWRA----L-GLDDNGLEPVNYPEDKRTR--RQDLP-P-----------AYHENGAIYIAKREALLESN-------- 190 (223)
T ss_pred ---cHHh----e-eeccCCceeccCcccccCC--cCCCh-h-----------HeeECCEEEEEEHHHHHhcC--------
Confidence 1111 1 1111111122221110000 00000 0 11245679998877441110
Q ss_pred HHHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHh
Q 007143 258 RRHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (616)
Q Consensus 258 r~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~ 298 (616)
...|.+++.+++++....+|++++++..+.
T Consensus 191 -----------~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae 220 (223)
T cd02513 191 -----------SFFGGKTGPYEMPRERSIDIDTEEDFELAE 220 (223)
T ss_pred -----------CccCCCeEEEEeCccceeCCCCHHHHHHHH
Confidence 114788888888866789999999987663
No 153
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.15 E-value=2.5e-10 Score=94.32 Aligned_cols=71 Identities=27% Similarity=0.428 Sum_probs=39.4
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143 365 IGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436 (616)
Q Consensus 365 IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~ 436 (616)
||++|.|+++|.|.+++|++++.|+++|+|.+++|++++.|+++++|. +++|+++++|++++.++++++++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~v~ 72 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLIS 72 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCCEEe
Confidence 455555555555555555555555555555555555555555555554 45555555555555555555544
No 154
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.14 E-value=2.8e-09 Score=105.85 Aligned_cols=111 Identities=22% Similarity=0.293 Sum_probs=80.8
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|||||+|.|+||+. ..||+|+|++|+|||+|+++.+..+ ++++|+|++++. .+.+..++... ..+.++
T Consensus 2 aiIlAaG~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~-------~~~~~~ 71 (217)
T TIGR00453 2 AVIPAAGRGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVAR-------AVPKIV 71 (217)
T ss_pred EEEEcCcccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcC-------CcEEEe
Confidence 79999999999974 4699999999999999999999998 899999999865 35565555321 123344
Q ss_pred eCCCccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 109 ESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
.... +...+++... ..+ ..+ +|++.||+ +....+..+++.+++
T Consensus 72 ~~~~--~~~~sl~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~ 118 (217)
T TIGR00453 72 AGGD--TRQDSVRNGL--KALKDAEWVLVHDAARPFVPKELLDRLLEALRK 118 (217)
T ss_pred CCCc--hHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence 3222 2345555332 223 344 89999998 666789999998765
No 155
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.14 E-value=2.1e-10 Score=126.47 Aligned_cols=63 Identities=27% Similarity=0.294 Sum_probs=40.0
Q ss_pred EECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007143 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (616)
Q Consensus 347 ~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~ 409 (616)
+|++++.|++++.|+ +++||++|.||+++.+.+++|++++.++..+.+.+++||++|.||+++
T Consensus 308 ii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~ 371 (448)
T PRK14357 308 VIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGT 371 (448)
T ss_pred EEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCc
Confidence 344555556666664 477778888887777777777776666655555555555555555443
No 156
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.6e-10 Score=120.67 Aligned_cols=96 Identities=34% Similarity=0.407 Sum_probs=82.5
Q ss_pred ECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCC
Q 007143 336 QSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG 414 (616)
Q Consensus 336 i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g 414 (616)
+.. +.|.++++||++|.|++++.|+ .++||++|.||.++.|.+|+||++++|++++.|.+|+|+.+|.||++.
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~----- 326 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL----- 326 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce-----
Confidence 344 7788999999999999999996 699999999999999999999999999999999999999999999933
Q ss_pred CEECCCcEECCCCEECCCCEEcccc
Q 007143 415 VVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 415 ~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
.|++ +.+|.++.+.++++++...
T Consensus 327 -~i~d-~~~g~~~~i~~g~~~~~~~ 349 (358)
T COG1208 327 -IIGD-VVIGINSEILPGVVVGPGS 349 (358)
T ss_pred -eecc-eEecCceEEcCceEeCCCc
Confidence 1777 7777777777777776543
No 157
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.13 E-value=4.9e-10 Score=106.28 Aligned_cols=99 Identities=26% Similarity=0.285 Sum_probs=57.6
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEE
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIM 405 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~I 405 (616)
.+++..++.|++++.|+++++|+.+ .+++|+ +++||++|.|+++|+|..+... .....++||++|+|
T Consensus 55 ~~~~~~~~~I~~~~~Ig~~~~i~~~----~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~--------~~~~~~~Ig~~v~I 122 (162)
T TIGR01172 55 FIRVLTGVDIHPGARIGRGVFIDHG----TGVVIGETAVIGDDVTIYHGVTLGGTGKE--------KGKRHPTVGEGVMI 122 (162)
T ss_pred HHheeeCeEeCCCCEECCCeEECCC----CeEEECCCCEECCCCEEcCCCEECCCccc--------cCCcCCEECCCcEE
Confidence 3445556666666666666666543 122332 2456666666666655433110 11334567777777
Q ss_pred CCCCEECCCCEECCCcEECCCCEE----CCCCEEcc
Q 007143 406 KAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSL 437 (616)
Q Consensus 406 g~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~ 437 (616)
|.+++|..+++||++|+||++++| |+++++..
T Consensus 123 g~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~~G 158 (162)
T TIGR01172 123 GAGAKVLGNIEVGENAKIGANSVVLKDVPPGATVVG 158 (162)
T ss_pred cCCCEEECCcEECCCCEECCCCEECCCCCCCCEEEe
Confidence 777777777777777777777764 55555544
No 158
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.12 E-value=7e-10 Score=108.25 Aligned_cols=104 Identities=20% Similarity=0.337 Sum_probs=53.1
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCcEEC
Q 007143 329 YRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMK 406 (616)
Q Consensus 329 ~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig 406 (616)
++++++.|++++.|++++.|++++.||++|.|. +++|+.+|.||.+|.|. ++.|..+++|+++|.| +.++.|.
T Consensus 95 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i-----g~~~~v~ 169 (201)
T TIGR03570 95 IVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFI-----GAGATII 169 (201)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEE-----CCCCEEe
Confidence 344444444444444444444444444444442 44444444444444442 3333444444444433 5556666
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 407 AGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 407 ~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
.++.|+++|+|+.+++|... +++++++...|
T Consensus 170 ~~~~i~~~~~i~~~~~v~~~--~~~~~~~~g~p 200 (201)
T TIGR03570 170 QGVTIGAGAIVGAGAVVTKD--IPDGGVVVGVP 200 (201)
T ss_pred CCCEECCCCEECCCCEECCc--CCCCCEEEecc
Confidence 66666666666666666554 66776665543
No 159
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.12 E-value=5.1e-10 Score=112.06 Aligned_cols=90 Identities=26% Similarity=0.351 Sum_probs=69.9
Q ss_pred eeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECCCc
Q 007143 323 LERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC 392 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~ 392 (616)
...++++++.++.|++++.|++++.||++|.|++++.|. +++||++|+||.+++|.+ ++|+++|.||.++
T Consensus 94 ~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gs 173 (231)
T TIGR03532 94 IIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANA 173 (231)
T ss_pred EEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCC
Confidence 455788999999999999999999999999999999995 899999999999999974 6777777777776
Q ss_pred EE-eceEECCCcEECCCCEEC
Q 007143 393 EL-RHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 393 ~I-~~siIg~~v~Ig~~~~I~ 412 (616)
.| .++.||++++|+++++|.
T Consensus 174 vI~~g~~Ig~~~~IgagsvV~ 194 (231)
T TIGR03532 174 VILEGVRVGKGAVVAAGAIVT 194 (231)
T ss_pred EEcCCCEECCCCEECCCCEEc
Confidence 66 244444444444444443
No 160
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.12 E-value=4.4e-10 Score=124.36 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=30.7
Q ss_pred EECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECC
Q 007143 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKA 407 (616)
Q Consensus 347 ~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~ 407 (616)
+||.+|.|++++.|. +++||++|+|+.++.|.++.|++++.++..+.+.+++||+++.||.
T Consensus 318 ~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~ 379 (458)
T PRK14354 318 KVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGC 379 (458)
T ss_pred EECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcC
Confidence 344444444554443 4555555555555555555555555555444444455555444443
No 161
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.12 E-value=5.3e-10 Score=112.87 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=76.3
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCCEEe-ce-EECCCCEECCCCEE-eceEECCCCEECCCcEEec---------eE
Q 007143 331 ALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DS-VIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRH---------VI 398 (616)
Q Consensus 331 ~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s-~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~---------si 398 (616)
..++.|.+..++.-+++||++|.|.+++.|. ++ +||+. +| +++| ++++|++++.|+.++.|.+ +.
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~ 227 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVIS 227 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEE
Confidence 3456666666666677777777777777664 55 56664 55 3555 3577778888888877543 78
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
||++|+||.++.| |..||++|+||+|++|.++|+|...
T Consensus 228 IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v~~~ 265 (319)
T TIGR03535 228 IGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKVTLW 265 (319)
T ss_pred ECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEEEEe
Confidence 8888999999888 7889999999999999999988753
No 162
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.10 E-value=7.3e-10 Score=108.43 Aligned_cols=110 Identities=21% Similarity=0.201 Sum_probs=70.6
Q ss_pred EcCCcEECCCCEE--CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCc-EEeceEECCC
Q 007143 330 RALEIEQSRSAQV--GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGC-ELRHVIVCDG 402 (616)
Q Consensus 330 ~~~~v~i~~~~~I--~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~-~I~~siIg~~ 402 (616)
+++++.|.+.+.+ +.++.||+++.|+.+++|. ++.||++|.||++|.|... .-.+...-..+. .....+||++
T Consensus 58 ig~~~~I~~~~~~~~g~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~ 137 (203)
T PRK09527 58 VGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNN 137 (203)
T ss_pred cCCCcEEcCCEEEeeCCCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCC
Confidence 5666667666665 4678888888888888883 5789999999999998632 000000000111 1234667777
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEE----CCCCEEcccc
Q 007143 403 VIMKAGAVLKPGVVLSFKVVIGERFVV----PAHSKVSLLQ 439 (616)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v----~~~~~v~~~~ 439 (616)
|+||.+++|.+|++||++++||+|++| |+++++...|
T Consensus 138 v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~P 178 (203)
T PRK09527 138 VWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVP 178 (203)
T ss_pred cEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeC
Confidence 777777777777777777777777764 4455554433
No 163
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.09 E-value=1.4e-10 Score=103.11 Aligned_cols=98 Identities=22% Similarity=0.228 Sum_probs=78.3
Q ss_pred CcEECCCCEECCCCEEe----ceEECCCCEECCCCEEe-------------ceEECCCCEECCCcEEeceEECCCcEECC
Q 007143 345 FTVIGYGTKIGSNSKIS----DSVIGEGCTIGSNVLIE-------------GSYIWDNVIIEDGCELRHVIVCDGVIMKA 407 (616)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I~----~s~IG~~~~Ig~~~~I~-------------~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~ 407 (616)
|.++...+.|.+++.|+ ++.||+.|.++.+|.|. +..||+++.|+++|++..+.||+.+++|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 33344444444455442 56677777777777775 46799999999999999999999999999
Q ss_pred CCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 408 GAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 408 ~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
+++|+++|+|.+.|+|.+++++|+.+.++.+...+
T Consensus 113 naviGrrCVlkdCc~ild~tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 113 NAVIGRRCVLKDCCRILDDTVLPPETLVPPYSTIG 147 (184)
T ss_pred ceeEcCceEhhhheeccCCcccCcccccCCceEEc
Confidence 99999999999999999999999999998776444
No 164
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.09 E-value=6e-10 Score=99.67 Aligned_cols=89 Identities=34% Similarity=0.392 Sum_probs=60.2
Q ss_pred CCCCEECCCCEEe-ceEECCCCEECCCCEE-eceEECCCCEECCCcEEeceEE----------CCCcEECCCCEECCCCE
Q 007143 349 GYGTKIGSNSKIS-DSVIGEGCTIGSNVLI-EGSYIWDNVIIEDGCELRHVIV----------CDGVIMKAGAVLKPGVV 416 (616)
Q Consensus 349 g~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I-~~s~I~~~v~Ig~~~~I~~siI----------g~~v~Ig~~~~I~~g~v 416 (616)
|+++.|++++.|. +++||++|.|++++.| .+++|++++.|++++.+.++.+ -.+++||++++|+.+++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 81 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT 81 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence 3444444444443 4566666666666666 3566777777777776655432 24677888888888888
Q ss_pred ECCCcEECCCCEECCCCEEcc
Q 007143 417 LSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 417 Ig~~v~Ig~~~~v~~~~~v~~ 437 (616)
|.++++|++++.|++++++..
T Consensus 82 v~~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 82 ILPGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred EeCCcEECCCCEEccCCEEeC
Confidence 888888888888888888764
No 165
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.08 E-value=1.5e-09 Score=99.24 Aligned_cols=16 Identities=25% Similarity=0.630 Sum_probs=8.2
Q ss_pred eEECCCCEECCCCEEe
Q 007143 363 SVIGEGCTIGSNVLIE 378 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~ 378 (616)
++||++|.||++|.|.
T Consensus 48 a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 48 VIVGKGSDVGGGASIM 63 (147)
T ss_pred EEECCCCEECCCCEEE
Confidence 4455555555555554
No 166
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.07 E-value=5.4e-10 Score=110.61 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=83.8
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEe---------ceEEC
Q 007143 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELR---------HVIVC 400 (616)
Q Consensus 332 ~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~---------~siIg 400 (616)
.++.|.|++++...++||+|++|.+++.|. ++.++.+|+|.-+.+++ ...||.||.||.++.|. ..+|+
T Consensus 107 ~g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Ig 186 (271)
T COG2171 107 EGVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIG 186 (271)
T ss_pred CceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEEC
Confidence 446777777777777777777777777774 77777777777777775 35677777777777774 37899
Q ss_pred CCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 401 DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 401 ~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+||.||+++.+..|+.||+||+|++|++|..+|.+..
T Consensus 187 dncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~ 223 (271)
T COG2171 187 DNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYD 223 (271)
T ss_pred CccEeccccceEeeeEeCCCcEEecceEEeCCcceEE
Confidence 9999999998888999999999999999999888865
No 167
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.05 E-value=1.6e-09 Score=109.92 Aligned_cols=105 Identities=14% Similarity=0.292 Sum_probs=88.7
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCE-ECCCCE---Ee-ceEECCCCEECCCcEEeceEECCC----cE
Q 007143 335 EQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCT-IGSNVL---IE-GSYIWDNVIIEDGCELRHVIVCDG----VI 404 (616)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~-Ig~~~~---I~-~s~I~~~v~Ig~~~~I~~siIg~~----v~ 404 (616)
.+..+++|++.+.|..++.||++++|. .++|+.++. +|.++. |. +++|+++|.||.+|.| .+.+..+ +.
T Consensus 174 Vvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI-g~tLsGg~~~~V~ 252 (341)
T TIGR03536 174 VVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST-MGTLSGGGNIVIS 252 (341)
T ss_pred EccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE-eEEEeCCCceeEE
Confidence 677788999899999999999999885 688888888 787766 53 7889999999999999 5566667 89
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 405 Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
||++|.|+.|+.| ++.||++++|++|+.|...+.+.
T Consensus 253 IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 253 VGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred ECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEE
Confidence 9999999999998 89999999999999998766554
No 168
>PLN02694 serine O-acetyltransferase
Probab=99.04 E-value=7.9e-10 Score=112.33 Aligned_cols=74 Identities=32% Similarity=0.391 Sum_probs=48.3
Q ss_pred eEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcc
Q 007143 363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSL 437 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~ 437 (616)
++||++|.||++|.|.+ ++++. + +..+..++++||++|+||.+++|..+++||++|+||+|++ ||+++++..
T Consensus 181 VVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~kdVP~~~~v~G 257 (294)
T PLN02694 181 VVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVLIDVPPRTTAVG 257 (294)
T ss_pred eEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCCCEECCCCEECCCCEECCcCCCCcEEEc
Confidence 45555555555555432 22222 1 3345567788888888888888887888888888888887 456666665
Q ss_pred cc
Q 007143 438 LQ 439 (616)
Q Consensus 438 ~~ 439 (616)
.|
T Consensus 258 ~P 259 (294)
T PLN02694 258 NP 259 (294)
T ss_pred cC
Confidence 44
No 169
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.04 E-value=1.1e-09 Score=105.43 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=78.4
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
|.|||||+|.++||++ ||+|+|++|+|||+|+++.+... +.+|+|++++.... +. . ..+.++
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~--------~~~~~v 62 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGKPLLEHVLERLKPL-VDEVVISANRDQER---YA-L--------LGVPVI 62 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCEEHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h--------cCCcEe
Confidence 4689999999999986 99999999999999999999988 89999999876544 11 1 123344
Q ss_pred eCC-CccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHH
Q 007143 109 ESH-NIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEH 153 (616)
Q Consensus 109 ~~~-~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h 153 (616)
..+ ...|...+++.... .+..+ ++++.||+ +....+..+++.+
T Consensus 63 ~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 63 PDEPPGKGPLAGILAALR--AAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred eCCCCCCCCHHHHHHHHH--hcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 433 24566677765432 23334 99999999 5556788887765
No 170
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.03 E-value=2.4e-09 Score=102.62 Aligned_cols=117 Identities=21% Similarity=0.335 Sum_probs=91.9
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i 105 (616)
..+-+||||+|.++||+. +|.|+|+.|+||+.++++.+.++++++++|++++. .+........ ..+
T Consensus 4 ~~v~~VvLAAGrssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~~--------~~~ 70 (199)
T COG2068 4 STVAAVVLAAGRSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLAQ--------LGV 70 (199)
T ss_pred cceEEEEEcccccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhcc--------CCe
Confidence 457899999999999996 99999999999999999999999999999999986 3333333322 346
Q ss_pred EEEeCCCc-cCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143 106 KTIESHNI-ISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (616)
Q Consensus 106 ~~i~~~~~-~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~ 156 (616)
+++.++.+ .|++..++....+..-.++ ++++.||+ +...++..+++.++.+
T Consensus 71 ~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 71 TVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 66666554 6888888865543222234 99999999 8888999999887764
No 171
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.01 E-value=3.2e-09 Score=102.57 Aligned_cols=95 Identities=26% Similarity=0.356 Sum_probs=53.2
Q ss_pred CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEece-EECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEE
Q 007143 343 GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS-YIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVL 417 (616)
Q Consensus 343 ~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s-~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vI 417 (616)
+.++.||+++.|+.+++|. ...||++|.|+++|.|... ...+......+..+ ..+.||++|+||.+|+|.+|++|
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~I 150 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTI 150 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEE
Confidence 4445555555555555443 2389999999999998521 11122222222222 34555667777777766666666
Q ss_pred CCCcEECCCCE----ECCCCEEcc
Q 007143 418 SFKVVIGERFV----VPAHSKVSL 437 (616)
Q Consensus 418 g~~v~Ig~~~~----v~~~~~v~~ 437 (616)
|++++||++++ |++++++..
T Consensus 151 G~~~vIgagsvV~~di~~~~i~~G 174 (183)
T PRK10092 151 GDNVVVASGAVVTKDVPDNVVVGG 174 (183)
T ss_pred CCCCEECCCCEEccccCCCcEEEe
Confidence 66666666665 344444443
No 172
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.01 E-value=4.3e-09 Score=91.66 Aligned_cols=82 Identities=18% Similarity=0.093 Sum_probs=63.9
Q ss_pred CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEe-ceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCc
Q 007143 344 SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKV 421 (616)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v 421 (616)
+.++|++++.|++++.|. +++||++|.||+++.|. +++|+.++.|+. .|.+++|.+++.|+.++.|+ +++||+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence 467888888888888884 68899999999999886 588888888864 57788888888888777776 56666666
Q ss_pred EECCCCE
Q 007143 422 VIGERFV 428 (616)
Q Consensus 422 ~Ig~~~~ 428 (616)
.||+++.
T Consensus 87 ~ig~~~~ 93 (101)
T cd05635 87 NLGAGTN 93 (101)
T ss_pred EECCCce
Confidence 6666654
No 173
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.01 E-value=2.6e-08 Score=106.74 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=79.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i 105 (616)
+.+.+||||+|.|+||.. ..||+|+|++|+|||+|+++.+..++ +++|+|++++....+.+.+.... . .+
T Consensus 4 m~v~aIILAAG~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~-----~-~v 74 (378)
T PRK09382 4 SDISLVIVAAGRSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI-----K-FV 74 (378)
T ss_pred CcceEEEECCCCCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC-----C-eE
Confidence 347899999999999953 57999999999999999999999987 79999999876444333222110 1 13
Q ss_pred EEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 106 KTIESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
.++... .+..++++... ..+..+ +|+..||. +....+..+++..+.
T Consensus 75 ~~v~gG--~~r~~SV~~gL--~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 75 TLVTGG--ATRQESVRNAL--EALDSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred EEeCCC--chHHHHHHHHH--HhcCCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 444322 23445555332 233445 77788886 555677888876543
No 174
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=98.98 E-value=5.8e-09 Score=101.41 Aligned_cols=114 Identities=17% Similarity=0.203 Sum_probs=78.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHH---HHHHHhcCCCCCCCcEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQV---IDYLENSEWFSQPNFTV 105 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i---~~~l~~~~~~~~~~~~i 105 (616)
+.+||||+|.++||+. ||.|++++|+|||+|+++.+...++.+++|++++..+.+ .++... ...+
T Consensus 1 ~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~-------~~~~ 68 (190)
T TIGR03202 1 IVAIYLAAGQSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLA-------DERI 68 (190)
T ss_pred CeEEEEcCCccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhc-------CCCe
Confidence 3589999999999986 899999999999999999888889999999998764432 222111 0123
Q ss_pred EEEeCC-CccCHHHHHHHHHhc-ccccCC-EEEEeCce--ecchhHHHHHHHHH
Q 007143 106 KTIESH-NIISAGDALRLIYEQ-NVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (616)
Q Consensus 106 ~~i~~~-~~~~~gdalr~~~~~-~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~ 154 (616)
.++... ...|.+.+++..... ..-..+ +++++||+ +....+..+++..+
T Consensus 69 ~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~ 122 (190)
T TIGR03202 69 MLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAK 122 (190)
T ss_pred EEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHh
Confidence 444322 234666666654322 111234 89999999 55567778877654
No 175
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.96 E-value=2.8e-09 Score=103.55 Aligned_cols=123 Identities=19% Similarity=0.141 Sum_probs=86.2
Q ss_pred cceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEec-------
Q 007143 320 ATKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEG------- 379 (616)
Q Consensus 320 ~~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~------- 379 (616)
+|....+++-++.++.|++.++|.+.+.||.+++|.+++.|+ ..+||++|.|.+.++|+.
T Consensus 26 pf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~vTi~~GT~~g~g 105 (260)
T COG1043 26 PFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREFVTIHRGTVQGGG 105 (260)
T ss_pred ceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeEEEEeccccCCce
Confidence 566677777777778888888888888888888888888884 268999999999999972
Q ss_pred -eEECCCCEECCCcEE-eceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEccccCCC
Q 007143 380 -SYIWDNVIIEDGCEL-RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQQPT 442 (616)
Q Consensus 380 -s~I~~~v~Ig~~~~I-~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~~~~ 442 (616)
+.||+++.+-.+++| .+|+||++|++..++.+.-.+.||+.+.||-.+-|...++|+.+..++
T Consensus 106 ~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~~amiG 170 (260)
T COG1043 106 VTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGAHAMIG 170 (260)
T ss_pred eEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcchheec
Confidence 456666555555555 346666666666666666666666666666655555555555544443
No 176
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=98.96 E-value=6.1e-09 Score=101.53 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.|.+||||+|.++||+ ..||+|+|++|+|||+|+++.+. .++++|+|+++.+.+.+. .. ++.
T Consensus 2 ~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~~ll~~~i~~l~-~~~~~i~vv~~~~~~~~~----~~------~~~-- 64 (193)
T PRK00317 2 PPITGVILAGGRSRRMG----GVDKGLQELNGKPLIQHVIERLA-PQVDEIVINANRNLARYA----AF------GLP-- 64 (193)
T ss_pred CCceEEEEcCCCcccCC----CCCCceeEECCEEHHHHHHHHHh-hhCCEEEEECCCChHHHH----hc------CCc--
Confidence 35889999999999995 24999999999999999999998 789999999876543322 10 122
Q ss_pred EEeCCC--ccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 107 TIESHN--IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 107 ~i~~~~--~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
++.... ..|...+++.... ....+ ++++.||+ +....+..+++.+.+
T Consensus 65 ~v~~~~~~~~g~~~~i~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 65 VIPDSLADFPGPLAGILAGLK--QARTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred EEeCCCCCCCCCHHHHHHHHH--hcCCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 333222 2455556664332 23444 89999999 455678888876543
No 177
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.95 E-value=6.1e-09 Score=101.95 Aligned_cols=76 Identities=25% Similarity=0.226 Sum_probs=64.1
Q ss_pred ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec-------------eEECCCcEECCCCEECCCCEECCCcEECC
Q 007143 362 DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH-------------VIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (616)
Q Consensus 362 ~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~-------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (616)
++.||++|.|+.+|+|. +..||++|.|+++|.|.. ......++||++|+|+.+++|..+++||+
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~ 154 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECC
Confidence 56778888888888773 478999999999998852 23445699999999999999999999999
Q ss_pred CCEECCCCEEcc
Q 007143 426 RFVVPAHSKVSL 437 (616)
Q Consensus 426 ~~~v~~~~~v~~ 437 (616)
+++|++|++|..
T Consensus 155 ~~vIgagsvV~k 166 (203)
T PRK09527 155 NSVIGAGSVVTK 166 (203)
T ss_pred CCEECCCCEEcc
Confidence 999999999986
No 178
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.95 E-value=4.9e-09 Score=113.20 Aligned_cols=91 Identities=19% Similarity=0.369 Sum_probs=70.7
Q ss_pred EECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCC
Q 007143 341 QVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK 420 (616)
Q Consensus 341 ~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~ 420 (616)
.+...+.+...+.|++++.|.++.||++|.|+. .+.+|+|+++|+||++|+|.+|+|+++|.||+++.|. +|+|+++
T Consensus 272 ~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~-~~ii~~~ 348 (380)
T PRK05293 272 RIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIE-RAIIGEN 348 (380)
T ss_pred ceecCCcCCCCCEECCCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEe-EEEECCC
Confidence 343444455566666667777788888888863 5778889999999999999999999999999998886 5888888
Q ss_pred cEECCCCEECCCCE
Q 007143 421 VVIGERFVVPAHSK 434 (616)
Q Consensus 421 v~Ig~~~~v~~~~~ 434 (616)
++|++++.+.+++.
T Consensus 349 ~~i~~~~~i~~~~~ 362 (380)
T PRK05293 349 AVIGDGVIIGGGKE 362 (380)
T ss_pred CEECCCCEEcCCCc
Confidence 88888888877643
No 179
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.93 E-value=1.1e-08 Score=97.78 Aligned_cols=95 Identities=28% Similarity=0.332 Sum_probs=54.6
Q ss_pred CCCcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceE-ECCCCEECCCcE-EeceEECCCcEECCCCEECCCCEE
Q 007143 343 GSFTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSY-IWDNVIIEDGCE-LRHVIVCDGVIMKAGAVLKPGVVL 417 (616)
Q Consensus 343 ~~~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~-I~~~v~Ig~~~~-I~~siIg~~v~Ig~~~~I~~g~vI 417 (616)
+.++.||+++.|++++.|. +.+||++|.|+++|.|.... -.+......+.. ...+.||++|+||.+++|.+|++|
T Consensus 60 ~~~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~I 139 (169)
T cd03357 60 GYNIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTI 139 (169)
T ss_pred CCcCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEE
Confidence 3456666666666666663 56889999999888885321 000000001111 234555777777777777666666
Q ss_pred CCCcEECCCCE----ECCCCEEcc
Q 007143 418 SFKVVIGERFV----VPAHSKVSL 437 (616)
Q Consensus 418 g~~v~Ig~~~~----v~~~~~v~~ 437 (616)
|++|+||++++ ||+++++..
T Consensus 140 g~~~~VgagavV~~~vp~~~vv~G 163 (169)
T cd03357 140 GDNSVIGAGSVVTKDIPANVVAAG 163 (169)
T ss_pred CCCCEECCCCEEccccCCCcEEEc
Confidence 66666666666 344444443
No 180
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.92 E-value=7.1e-09 Score=84.92 Aligned_cols=75 Identities=35% Similarity=0.438 Sum_probs=45.0
Q ss_pred EECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECC
Q 007143 347 VIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGE 425 (616)
Q Consensus 347 ~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~ 425 (616)
.||+++.|++++.|. +++||++|.|+++|.|.+..... ......|+++++|+.++.|.+++.|++++.|++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~ 73 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA 73 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence 455666666666665 37777777777777776553321 223355566666666666666666666666665
Q ss_pred CCEE
Q 007143 426 RFVV 429 (616)
Q Consensus 426 ~~~v 429 (616)
+++|
T Consensus 74 ~s~v 77 (78)
T cd00208 74 GAVV 77 (78)
T ss_pred CcEe
Confidence 5544
No 181
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.92 E-value=1.1e-08 Score=89.88 Aligned_cols=83 Identities=33% Similarity=0.409 Sum_probs=42.6
Q ss_pred ECCCCEECCCCEEe---ceEECCCCEECCCCEEece---EECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCc
Q 007143 348 IGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGS---YIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKV 421 (616)
Q Consensus 348 Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s---~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v 421 (616)
||+++.|++++.|. ++.||++|.|+++|+|.++ .++.+..+...+....++||++++|+.++.|.++++|++++
T Consensus 4 Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~ 83 (109)
T cd04647 4 IGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGDGA 83 (109)
T ss_pred ECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECCCC
Confidence 34444444444442 4566666666666666543 22223333333344555556666666665555555555555
Q ss_pred EECCCCEEC
Q 007143 422 VIGERFVVP 430 (616)
Q Consensus 422 ~Ig~~~~v~ 430 (616)
.|+++++|.
T Consensus 84 ~i~~~~~v~ 92 (109)
T cd04647 84 VVGAGSVVT 92 (109)
T ss_pred EECCCCEEe
Confidence 555555443
No 182
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=98.92 E-value=1.3e-08 Score=98.30 Aligned_cols=110 Identities=15% Similarity=0.228 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
+.+||||+|.++||+. .||+|+|++|+|||+|+++.+.. ++++|+|++...... +... .+ + +.++
T Consensus 1 ~~~iILAgG~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~-~~----~--~~~i 65 (186)
T TIGR02665 1 ISGVILAGGRARRMGG----RDKGLVELGGKPLIEHVLARLRP-QVSDLAISANRNPER---YAQA-GF----G--LPVV 65 (186)
T ss_pred CeEEEEcCCccccCCC----CCCceeEECCEEHHHHHHHHHHh-hCCEEEEEcCCCHHH---Hhhc-cC----C--CcEE
Confidence 4589999999999972 49999999999999999999986 589998888654322 2211 11 1 2333
Q ss_pred eC--CCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 109 ES--HNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 109 ~~--~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
.. +...|.+.+++.... .+..+ ++++.||+ +....+..+++.+..
T Consensus 66 ~~~~~~~~g~~~si~~al~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 66 PDALADFPGPLAGILAGLR--WAGTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred ecCCCCCCCCHHHHHHHHH--hcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 32 234677777775432 23444 99999999 455567777776543
No 183
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.91 E-value=9.2e-09 Score=90.35 Aligned_cols=102 Identities=20% Similarity=0.184 Sum_probs=59.0
Q ss_pred ceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcE
Q 007143 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVI 404 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~ 404 (616)
++++++++.|+++++|.+ ++.||++|.|++++.|.++ .+..++.++.+.+.....++.||++|.| +.++.
T Consensus 1 ~v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~Ig~~~~i-----g~~~~ 72 (109)
T cd04647 1 NISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDH---NHDIDDPERPIEQGVTSAPIVIGDDVWI-----GANVV 72 (109)
T ss_pred CeEECCCcEECCCCEEecCCceEECCCCEECCCCEEECC---CCCCCccccccccccccCCeEECCCCEE-----CCCCE
Confidence 367888899999998877 8999999999999988654 2333333333333334444444444444 33333
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCCEEccc
Q 007143 405 MKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLL 438 (616)
Q Consensus 405 Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~ 438 (616)
|..++.|+++|+|+.++.|.. .+++++++...
T Consensus 73 i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~g~ 104 (109)
T cd04647 73 ILPGVTIGDGAVVGAGSVVTK--DVPPNSIVAGN 104 (109)
T ss_pred EcCCCEECCCCEECCCCEEee--ECCCCCEEEcc
Confidence 344444444444444444442 35555555443
No 184
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.91 E-value=1.7e-08 Score=100.14 Aligned_cols=115 Identities=22% Similarity=0.261 Sum_probs=81.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEE
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTI 108 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i 108 (616)
.|||||+|.|+||++ ..||+|+|++|+|||+|+++.+..++ +++|+|++++........+..... ...+.++
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~----~~~~~~~ 74 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGL----SKVVKIV 74 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhccc----CCCeEEE
Confidence 589999999999986 37999999999999999999999986 999999998765444443321110 1234444
Q ss_pred eCCCccCHHHHHHHHHhcccc---cCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 109 ESHNIISAGDALRLIYEQNVI---HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 109 ~~~~~~~~gdalr~~~~~~~i---~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
... .+.+.+++.... .+ ..+ +|++.||+ +....++.+++.++.
T Consensus 75 ~~~--~~~~~si~~al~--~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~ 123 (218)
T cd02516 75 EGG--ATRQDSVLNGLK--ALPDADPDIVLIHDAARPFVSPELIDRLIDALKE 123 (218)
T ss_pred CCc--hHHHHHHHHHHH--hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhh
Confidence 332 234555664432 23 334 78888998 666789999998854
No 185
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.90 E-value=1.4e-08 Score=88.37 Aligned_cols=64 Identities=33% Similarity=0.470 Sum_probs=41.2
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcE---EeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143 363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE---LRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~---I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~ 431 (616)
++||+++.||++|.| ++++.|+.++. +..++|+++++|+.++.+..+++|++++.|+++++|.+
T Consensus 23 ~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~ 89 (101)
T cd03354 23 IVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVTK 89 (101)
T ss_pred EEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCCCEECc
Confidence 355555666655543 45555555553 56677777777777777777777777777777766543
No 186
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=4e-09 Score=108.76 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=50.6
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCC
Q 007143 330 RALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGA 409 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~ 409 (616)
+++++.|+..+.| ..++||.+|.||++++|.+|.|.+|++||++|.|++|+|+.++.||++|.+.+|+||.+-+|.+..
T Consensus 337 v~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~nC~Ig~~yvVeak~ 415 (433)
T KOG1462|consen 337 VGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKNCIIGPGYVVEAKG 415 (433)
T ss_pred cCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeeeeEecCCcEEcccc
Confidence 3444444444444 455666666666666666666666666666666666666666666666666666666666655444
Q ss_pred EEC
Q 007143 410 VLK 412 (616)
Q Consensus 410 ~I~ 412 (616)
+.+
T Consensus 416 ~~~ 418 (433)
T KOG1462|consen 416 KHG 418 (433)
T ss_pred ccc
Confidence 443
No 187
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=98.90 E-value=1.4e-08 Score=101.58 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=81.9
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH-HHHHHHHHhcCCCCCCCcEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS-KQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~-~~i~~~l~~~~~~~~~~~~i 105 (616)
.+.|||||+|.|+||+. ..||+|+|++|+|||+|+++.+..++ +++|+|++++.. +.+.+.+.. .. ..+
T Consensus 3 ~~~~iILAaG~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~-----~~~ 73 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-KD-----PKV 73 (227)
T ss_pred ceEEEEEcCccccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-cC-----Cce
Confidence 47899999999999962 45999999999999999999999875 899999998654 444333321 10 123
Q ss_pred EEEeCCCccCHHHHHHHHHhcccc-cCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 106 KTIESHNIISAGDALRLIYEQNVI-HGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i-~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
.++... .+.+.+++... ..+ ..+ +|++.||+ +....+..+++.++.
T Consensus 74 ~~~~~~--~~~~~sv~~~l--~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~ 123 (227)
T PRK00155 74 TVVAGG--AERQDSVLNGL--QALPDDDWVLVHDAARPFLTPDDIDRLIEAAEE 123 (227)
T ss_pred EEeCCc--chHHHHHHHHH--HhCCCCCEEEEccCccCCCCHHHHHHHHHHHhh
Confidence 344322 23566666543 233 334 78888998 666789999998765
No 188
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.88 E-value=1.4e-08 Score=99.10 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=73.7
Q ss_pred CcEECCCCEECCCCEE-----eceEECCCCEECCCCEEe---ceEECCCCEECCCcEEeceE------------------
Q 007143 345 FTVIGYGTKIGSNSKI-----SDSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRHVI------------------ 398 (616)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I-----~~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~si------------------ 398 (616)
+..+|+++.++.++.+ ....||++|.|++++.|. +..||++|.|+.++.|.+..
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 3344444444444444 256899999999999996 68999999999999986421
Q ss_pred ----ECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 399 ----VCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 399 ----Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
-...+.||++++|+.+++|..+++||++++|+++++|..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 124688999999999999999999999999999999986
No 189
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.88 E-value=1.6e-08 Score=99.30 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=78.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.+.+||||+|.++||+. ||+|+|++|+|||+|+++.|... +.+|+|++++ .+.++.... ..+.
T Consensus 6 ~~~~~vILAgG~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~---------~~~~ 69 (200)
T PRK02726 6 NNLVALILAGGKSSRMGQ-----DKALLPWQGVPLLQRVARIAAAC-ADEVYIITPW-PERYQSLLP---------PGCH 69 (200)
T ss_pred CCceEEEEcCCCcccCCC-----CceeeEECCEeHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhcc---------CCCe
Confidence 358899999999999975 89999999999999999999764 7889888764 333333221 1244
Q ss_pred EEeCCC-ccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHH
Q 007143 107 TIESHN-IISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (616)
Q Consensus 107 ~i~~~~-~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~ 154 (616)
++.... ..|...+++.... .+..+ ++++.||+ +....+..+++.+.
T Consensus 70 ~i~~~~~~~G~~~si~~~l~--~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 70 WLREPPPSQGPLVAFAQGLP--QIKTEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred EecCCCCCCChHHHHHHHHH--hCCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 454333 2566666664432 33444 99999999 56667888887654
No 190
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.86 E-value=2e-08 Score=95.95 Aligned_cols=75 Identities=24% Similarity=0.239 Sum_probs=61.0
Q ss_pred eEECCCCEECCCCEEe---ceEECCCCEECCCcEEe-------------ceEECCCcEECCCCEECCCCEECCCcEECCC
Q 007143 363 SVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELR-------------HVIVCDGVIMKAGAVLKPGVVLSFKVVIGER 426 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~-------------~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~ 426 (616)
..||++|.|+.+|+|. +.+|++++.|+++|.|. +..++..++||++|+|+.+++|..+++||++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~ 142 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGDN 142 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECCC
Confidence 4566666666666663 46788888888888883 2356778999999999999999999999999
Q ss_pred CEECCCCEEcc
Q 007143 427 FVVPAHSKVSL 437 (616)
Q Consensus 427 ~~v~~~~~v~~ 437 (616)
++|+++++|..
T Consensus 143 ~~VgagavV~~ 153 (169)
T cd03357 143 SVIGAGSVVTK 153 (169)
T ss_pred CEECCCCEEcc
Confidence 99999999976
No 191
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.86 E-value=1.2e-08 Score=109.45 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=71.0
Q ss_pred ECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCC
Q 007143 348 IGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERF 427 (616)
Q Consensus 348 Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~ 427 (616)
+-+.+.|++.++|.+|+||++|.|+++ +|.+|+||++|+|+++|+|.+|+|++++.||.++.|. +|+||++++|++++
T Consensus 280 ~~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~-~~ivg~~~~i~~~~ 357 (361)
T TIGR02091 280 LPPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIR-NAIIDKNVRIGEGV 357 (361)
T ss_pred CCCceEecCCCEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEe-eeEECCCCEECCCC
Confidence 444566666667788999999999987 8899999999999999999999999999999999995 78898888888888
Q ss_pred EEC
Q 007143 428 VVP 430 (616)
Q Consensus 428 ~v~ 430 (616)
+|+
T Consensus 358 ~i~ 360 (361)
T TIGR02091 358 VIG 360 (361)
T ss_pred EeC
Confidence 775
No 192
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.86 E-value=9.1e-09 Score=110.66 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=70.7
Q ss_pred CCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143 350 YGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (616)
Q Consensus 350 ~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v 429 (616)
+.+.|++++.|.+|+||++|+|+ +.|.+|+|+++|.|+++|+|.+|+|++++.|++++.|. +|+||.+++|++++.+
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEE-EEEECCCCEECCCCEe
Confidence 56667777777889999999997 46999999999999999999999999999999999997 6999999988888887
Q ss_pred CCC
Q 007143 430 PAH 432 (616)
Q Consensus 430 ~~~ 432 (616)
.+.
T Consensus 354 ~~~ 356 (369)
T TIGR02092 354 AGT 356 (369)
T ss_pred CCC
Confidence 553
No 193
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=98.85 E-value=3e-08 Score=100.75 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCc
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNF 103 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~ 103 (616)
...+.+||||+|.|+||+. ..||+|++++|+|||+|+++.+... ++++|+|++++. .+.++..+.. + +.
T Consensus 22 ~~~i~aIILAAG~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~--~----~~ 92 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN--I----DV 92 (252)
T ss_pred cCceEEEEEcccccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--c----CC
Confidence 3346799999999999973 5799999999999999999999985 899999999875 4455555433 1 12
Q ss_pred EEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEeCce----ecchhHHHHHHHHHHh
Q 007143 104 TVKTIESHNIISAGDALRLIYEQNVIH-GDFVLISGDT----VSNMLLTQALQEHKER 156 (616)
Q Consensus 104 ~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~gD~----i~~~~l~~~l~~h~~~ 156 (616)
.+.++.... +..+.++.... .+. +..+|+.+|. +....+..+++.+++.
T Consensus 93 ~i~~v~gg~--~r~~SV~~gl~--~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 93 PLKFALPGK--ERQDSVFNGLQ--EVDANSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred ceEEcCCCC--chHHHHHHHHH--hccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 344443222 22334443222 233 2356677773 5556778888877653
No 194
>PLN02739 serine acetyltransferase
Probab=98.84 E-value=1e-08 Score=106.24 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=31.6
Q ss_pred ceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143 396 HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 396 ~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
+.+||++|+||.|++|..++.||++++||+|++ ||+++++...|
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~P 304 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNP 304 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecC
Confidence 456688888888888877777777777777776 56666665543
No 195
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.84 E-value=2.3e-08 Score=81.84 Aligned_cols=73 Identities=29% Similarity=0.338 Sum_probs=55.0
Q ss_pred eEECCCCEECCCCEEec-eEECCCCEECCCcEEeceEEC---CCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143 363 SVIGEGCTIGSNVLIEG-SYIWDNVIIEDGCELRHVIVC---DGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~-s~I~~~v~Ig~~~~I~~siIg---~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v 435 (616)
++||++|.|+++++|.+ +.|++++.|+++|.|.+.... ..+.||++++|+.+|+|..+++||++++|++++.|
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 35777777777777764 778888888888887665432 35788888888888888888888888888877766
No 196
>PRK10502 putative acyl transferase; Provisional
Probab=98.84 E-value=2.7e-08 Score=96.27 Aligned_cols=92 Identities=26% Similarity=0.291 Sum_probs=73.8
Q ss_pred cEECCCCEECCCCEEe---ceEECCCCEECCCCEEe---ceEECCCCEECCCcEEec----------eEECCCcEECCCC
Q 007143 346 TVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIE---GSYIWDNVIIEDGCELRH----------VIVCDGVIMKAGA 409 (616)
Q Consensus 346 ~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~---~s~I~~~v~Ig~~~~I~~----------siIg~~v~Ig~~~ 409 (616)
+.||+++.|++++.|. +..||++|.||++|.|. ...|+++|.|+++|.|.. ..+...+.||++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 3445555555555553 57899999999999996 578999999998888742 2345678999999
Q ss_pred EECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 410 VLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 410 ~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+|+.+++|..|++||++++|+++++|..
T Consensus 132 ~Ig~~a~I~~Gv~Ig~~~vIga~svV~~ 159 (182)
T PRK10502 132 WLAADVFVAPGVTIGSGAVVGARSSVFK 159 (182)
T ss_pred EEcCCCEEcCCCEECCCCEECCCCEEec
Confidence 9999999999999999999999999875
No 197
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.83 E-value=6.4e-08 Score=98.47 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=46.8
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCC---CEEeceEECCCCEECCCcEEeceEECCC
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSN---VLIEGSYIWDNVIIEDGCELRHVIVCDG 402 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~---~~I~~s~I~~~v~Ig~~~~I~~siIg~~ 402 (616)
++.+++++.|++++.|+.. .+++||++++|+ ++.|+.+|.||.. +...+.+|+++|.||.+|.| ..+
T Consensus 141 gidI~~~a~IG~g~~I~h~----~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~I-----lgg 211 (273)
T PRK11132 141 QVDIHPAAKIGRGIMLDHA----TGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKI-----LGN 211 (273)
T ss_pred eeEecCcceECCCeEEcCC----CCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEE-----cCC
Confidence 4445555555555555421 234555544332 2334444444421 22234678888888888777 445
Q ss_pred cEECCCCEECCCCEECCCcEECCCCE
Q 007143 403 VIMKAGAVLKPGVVLSFKVVIGERFV 428 (616)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (616)
++||++++|++|++|..+ |.++++
T Consensus 212 v~IG~~a~IGAgSvV~~d--Vp~~~~ 235 (273)
T PRK11132 212 IEVGRGAKIGAGSVVLQP--VPPHTT 235 (273)
T ss_pred CEECCCCEECCCCEECcc--cCCCcE
Confidence 555555555555555543 555554
No 198
>PLN02357 serine acetyltransferase
Probab=98.83 E-value=1.5e-08 Score=105.88 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=30.2
Q ss_pred eceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcc
Q 007143 395 RHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSL 437 (616)
Q Consensus 395 ~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~ 437 (616)
.+++||++|+||.|+.|..+++||++++||+|++ ||+++++..
T Consensus 277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~dVP~~~~v~G 323 (360)
T PLN02357 277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLKDVPPRTTAVG 323 (360)
T ss_pred cCceeCCCeEECCceEEECCeEECCCCEECCCCEECcccCCCcEEEC
Confidence 4567788888888877776777777777777776 355555544
No 199
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.82 E-value=3.2e-08 Score=99.46 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=79.4
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcH--HHHHHHHHhcCCCCCCCcEEEE
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~--~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
|||||+|.++||. +|+|+|++|+|||+|+++.+..++ +++|+|+++... +.+.+++... .+.+
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~--------~v~~ 67 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKL--------GVKV 67 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHc--------CCeE
Confidence 7999999999994 699999999999999999999997 899999998764 6677766531 2344
Q ss_pred EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHh
Q 007143 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKER 156 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~ 156 (616)
+..+...+.+..+..+.. ...+ ++++.||+ +....++.+++.++..
T Consensus 68 v~~~~~~~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 68 FRGSEEDVLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred EECCchhHHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 544433222222221111 2334 89999999 6667899999988753
No 200
>PRK10191 putative acyl transferase; Provisional
Probab=98.82 E-value=3e-08 Score=91.97 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=17.1
Q ss_pred EECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143 398 IVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (616)
Q Consensus 398 iIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (616)
.||++|+||.++.|..++.||++++||++++
T Consensus 94 ~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~ 124 (146)
T PRK10191 94 HIGNGVELGANVIILGDITIGNNVTVGAGSV 124 (146)
T ss_pred EECCCcEEcCCCEEeCCCEECCCCEECCCCE
Confidence 4555555555555555555555555555554
No 201
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.81 E-value=4.7e-08 Score=94.40 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=61.0
Q ss_pred EECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-------------ceEECCCcEECCCCEECC
Q 007143 347 VIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-------------HVIVCDGVIMKAGAVLKP 413 (616)
Q Consensus 347 ~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-------------~siIg~~v~Ig~~~~I~~ 413 (616)
.+|.++.||+++ +|+.+|.|++.+.| .||++|.|+.+|.|. +..++..+.||++|+|+.
T Consensus 69 ~~g~~i~iG~~~-----~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~ 140 (183)
T PRK10092 69 DYGYNIFLGNNF-----YANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGG 140 (183)
T ss_pred eecCCcEEcCCc-----EECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECC
Confidence 445555555554 33444444443332 678888888888774 245678899999999999
Q ss_pred CCEECCCcEECCCCEECCCCEEcc
Q 007143 414 GVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 414 g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
+|+|.++++||++++|+++++|.+
T Consensus 141 ~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 141 RAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CCEECCCCEECCCCEECCCCEEcc
Confidence 999999999999999999999976
No 202
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=98.81 E-value=1.7e-07 Score=93.51 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=123.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~ 109 (616)
|||+|.|.++||. .|.|+|++|+|||.|+++.+.+++ +++|+|.+. .+.+.++..+. +..+.+..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd--~~~i~~~a~~~------g~~v~~~r 67 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTD--DEEIAEVAKSY------GASVPFLR 67 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCC--CHHHHHHHHHc------CCEeEEeC
Confidence 7999999999994 699999999999999999999987 566766443 34566655531 23343321
Q ss_pred ----CCCccCHHHHHHHHHhcc--cccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcc
Q 007143 110 ----SHNIISAGDALRLIYEQN--VIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQ 180 (616)
Q Consensus 110 ----~~~~~~~gdalr~~~~~~--~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~ 180 (616)
.....++.++++.....- .-..| |+++.+|. +...++..+++.+++. ++...+-+.+.... +
T Consensus 68 ~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~-----~~ds~~sv~~~~~~----~ 138 (222)
T TIGR03584 68 PKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQP-----NAHFVFSVTSFAFP----I 138 (222)
T ss_pred hHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhC-----CCCEEEEeeccCCC----h
Confidence 123457777777654321 01134 99999999 5667999999988763 23333333333211 1
Q ss_pred cccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHH
Q 007143 181 SRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRH 260 (616)
Q Consensus 181 ~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~d 260 (616)
.+ .+.++ +.+++..+..... ......+++ .-..+..||+++++.+.- .
T Consensus 139 ~~------~~~~~-~~g~~~~~~~~~~-~~~rQd~~~------------~y~~nga~y~~~~~~~~~--~---------- 186 (222)
T TIGR03584 139 QR------AFKLK-ENGGVEMFFPEHF-NTRSQDLEE------------AYHDAGQFYWGKSQAWLE--S---------- 186 (222)
T ss_pred HH------heEEC-CCCcEEecCCCcc-cCCCCCCch------------heeeCCeEEEEEHHHHHh--c----------
Confidence 11 12222 2344433332100 000001111 112356799998875421 1
Q ss_pred hhhhhhhccccCceEEEEEccccchhhccChhhHHHHh
Q 007143 261 FVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVS 298 (616)
Q Consensus 261 fv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~ 298 (616)
....+.+++.|++++....+|+++.++.-+-
T Consensus 187 -------~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae 217 (222)
T TIGR03584 187 -------GPIFSPHSIPIVLPRHLVQDIDTLEDWERAE 217 (222)
T ss_pred -------CCccCCCcEEEEeCccceeCCCCHHHHHHHH
Confidence 0114678899999877899999999988763
No 203
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.80 E-value=5.5e-08 Score=97.60 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=80.2
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+.+||||+|.|+||+. ..||+|+|++|+|||+|+++.+..+ ++.+|+|+++.. ...+.+++....+. ...+.
T Consensus 3 ~~~iIlAaG~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~---~~~~~ 76 (230)
T PRK13385 3 YELIFLAAGQGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVA---DQRVE 76 (230)
T ss_pred eEEEEECCeeccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcC---CCceE
Confidence 6789999999999973 4699999999999999999999986 589999988754 34455555432221 01244
Q ss_pred EEeCCCccCHHHHHHHHHhccccc-CC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 107 TIESHNIISAGDALRLIYEQNVIH-GD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 107 ~i~~~~~~~~gdalr~~~~~~~i~-~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
++.... +..++++.... .+. .+ +|++.||. +....+..+++.+++
T Consensus 77 ~v~~g~--~r~~sv~~gl~--~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~ 125 (230)
T PRK13385 77 VVKGGT--ERQESVAAGLD--RIGNEDVILVHDGARPFLTQDIIDRLLEGVAK 125 (230)
T ss_pred EcCCCc--hHHHHHHHHHH--hccCCCeEEEccCCCCCCCHHHHHHHHHHHhh
Confidence 443322 22355554322 232 35 67778999 666688999998765
No 204
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.80 E-value=2e-08 Score=110.42 Aligned_cols=100 Identities=21% Similarity=0.245 Sum_probs=75.8
Q ss_pred eEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECC----------------C---CEECCCCEEeceEECCCCEE
Q 007143 328 MYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE----------------G---CTIGSNVLIEGSYIWDNVII 388 (616)
Q Consensus 328 i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~----------------~---~~Ig~~~~I~~s~I~~~v~I 388 (616)
.++++++.|+ ++.| .+++|+++|.|+++|+|.+++|.. + +.||++|.|.+++|+++|.|
T Consensus 316 s~I~~~~~I~-~~~I-~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~I 393 (436)
T PLN02241 316 SIISHGCFLR-ECKI-EHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARI 393 (436)
T ss_pred eEEcCCcEEc-CeEE-EeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEE
Confidence 6788899998 8888 478999999999999999887633 3 38999999999999999999
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCC-cEECCCCEECCCCE
Q 007143 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFK-VVIGERFVVPAHSK 434 (616)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~-v~Ig~~~~v~~~~~ 434 (616)
|++|.|. ...-+....+++++|+|++| |+||++++|++|++
T Consensus 394 g~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 435 (436)
T PLN02241 394 GKNVVII-----NKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTV 435 (436)
T ss_pred CCCcEEe-----cccccCCccccccccEEeCCEEEEcCCcEeCCCCC
Confidence 9998884 33333344444445555555 56666666666654
No 205
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.78 E-value=2.9e-08 Score=94.35 Aligned_cols=93 Identities=31% Similarity=0.402 Sum_probs=57.6
Q ss_pred CcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCc---EEeceEECCCcEECCCC
Q 007143 333 EIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC---ELRHVIVCDGVIMKAGA 409 (616)
Q Consensus 333 ~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~---~I~~siIg~~v~Ig~~~ 409 (616)
++.|++.++||++.+|..++-| +||+.+.||++|.|. .+|++|..- --++-.||++|.||+||
T Consensus 67 gieIhp~A~IG~g~fIdHg~Gv---------VIgeta~IGddv~I~-----~gVTLGgtg~~~g~RhPtIg~~V~IGagA 132 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGV---------VIGETAVIGDDVTIY-----HGVTLGGTGKESGKRHPTIGNGVYIGAGA 132 (194)
T ss_pred ceeeCCCCeECCceEEcCCceE---------EEcceeEECCCeEEE-----cceEecCCCCcCCCCCCccCCCeEECCCC
Confidence 4556666666555555544322 556666666655542 222332221 13456778888888888
Q ss_pred EECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143 410 VLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 410 ~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
.|-.+..||+|++||+|++ ||+++++...|
T Consensus 133 kILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvP 166 (194)
T COG1045 133 KILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVP 166 (194)
T ss_pred EEEcceEECCCCEECCCceEccCCCCCceEecCc
Confidence 8877788888888888887 56677766654
No 206
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.77 E-value=2.1e-08 Score=110.03 Aligned_cols=100 Identities=21% Similarity=0.223 Sum_probs=77.6
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECC-------------------CCEECCCCEEeceEECCCCE
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGE-------------------GCTIGSNVLIEGSYIWDNVI 387 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~-------------------~~~Ig~~~~I~~s~I~~~v~ 387 (616)
+.++++++.| +++.|. +++||++|.||++++|.+|+|+. +|.||++|.|.+++|+.+|.
T Consensus 308 ~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~ 385 (429)
T PRK02862 308 ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNAR 385 (429)
T ss_pred eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcE
Confidence 4688999988 788884 78999999999999999999865 79999999999999999999
Q ss_pred ECCCcEEeceE-ECCCcEECCCCEECCC-CEECCCcEECCCCE
Q 007143 388 IEDGCELRHVI-VCDGVIMKAGAVLKPG-VVLSFKVVIGERFV 428 (616)
Q Consensus 388 Ig~~~~I~~si-Ig~~v~Ig~~~~I~~g-~vIg~~v~Ig~~~~ 428 (616)
||++|+|.+.. +..-=....++.|+.| |+|+.++++.++++
T Consensus 386 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (429)
T PRK02862 386 IGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTV 428 (429)
T ss_pred ECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCC
Confidence 99999996432 2211112235666666 66777777777664
No 207
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.76 E-value=8.4e-08 Score=84.47 Aligned_cols=84 Identities=24% Similarity=0.253 Sum_probs=48.7
Q ss_pred CcEECCCCEECCCCEEe---ceEECCCCEECCCCEEeceEECCCCEECCCc-EEeceEECCCcEECCCCEECCCCEECCC
Q 007143 345 FTVIGYGTKIGSNSKIS---DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGC-ELRHVIVCDGVIMKAGAVLKPGVVLSFK 420 (616)
Q Consensus 345 ~~~Ig~~~~Ig~~~~I~---~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~-~I~~siIg~~v~Ig~~~~I~~g~vIg~~ 420 (616)
+..||+++.|++++.|. ...||++|.|+++|.|.... ......... ......||++|+||.++.|.++++|+++
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~--h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~ 80 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGS--HDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEG 80 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCC--CCCCcCccceecCCEEECCCCEECCCCEECCCCEECCC
Confidence 34455555555555553 46788888888888774210 011111111 2245566777777777777776666666
Q ss_pred cEECCCCEEC
Q 007143 421 VVIGERFVVP 430 (616)
Q Consensus 421 v~Ig~~~~v~ 430 (616)
+.|+++++|.
T Consensus 81 ~~i~~gs~v~ 90 (107)
T cd05825 81 AVVGARSVVV 90 (107)
T ss_pred CEECCCCEEe
Confidence 6666666643
No 208
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.75 E-value=3.8e-08 Score=105.22 Aligned_cols=88 Identities=30% Similarity=0.385 Sum_probs=49.3
Q ss_pred CCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcE-----EeceEECCCcEECCCC-E
Q 007143 337 SRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCE-----LRHVIVCDGVIMKAGA-V 410 (616)
Q Consensus 337 ~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~-----I~~siIg~~v~Ig~~~-~ 410 (616)
.+.+.+.+++.||++|.| .++.| +.+|.||++|.|.+++|+++++||++|+ |.+|+|++++.|+.++ .
T Consensus 246 ~~~~~i~~~~~i~~~~~i-~~~~i-----~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i~~s~i~~~~~i~~~~~~ 319 (353)
T TIGR01208 246 DDESKIRGRVVVGEGAKI-VNSVI-----RGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEVEHSIVLDESVIEGVQAR 319 (353)
T ss_pred CCCCEEcCCEEECCCCEE-eCCEE-----ECCcEECCCCEEcCcEECCCCEECCCCEEeeeEEEeeEEcCCCEEcCCcce
Confidence 445566666666666666 44444 3344444444444444445555555544 4566666666666653 4
Q ss_pred ECCCCEECCCcEECCCCEECC
Q 007143 411 LKPGVVLSFKVVIGERFVVPA 431 (616)
Q Consensus 411 I~~g~vIg~~v~Ig~~~~v~~ 431 (616)
+. +++|+++++|++++.++.
T Consensus 320 ~~-~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 320 IV-DSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred ee-cCEEcCCCEECCCccccc
Confidence 43 566777777766666654
No 209
>PLN02694 serine O-acetyltransferase
Probab=98.75 E-value=3.3e-08 Score=100.60 Aligned_cols=84 Identities=23% Similarity=0.247 Sum_probs=49.3
Q ss_pred ceEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCC
Q 007143 327 GMYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG 402 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~ 402 (616)
++-+++++.|++++.|.. +++||++|.||++|.|. +++||.. +..+...+++|+++|.||.++.| .++.||++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~ 236 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGNVKIGEG 236 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCCCEECCC
Confidence 444666666666665543 45555555555555442 3333332 23344456788888888888887 45666666
Q ss_pred cEECCCCEECC
Q 007143 403 VIMKAGAVLKP 413 (616)
Q Consensus 403 v~Ig~~~~I~~ 413 (616)
+.||++++|..
T Consensus 237 a~IGAgSVV~k 247 (294)
T PLN02694 237 AKIGAGSVVLI 247 (294)
T ss_pred CEECCCCEECC
Confidence 66666666653
No 210
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.75 E-value=1.6e-08 Score=90.12 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=79.4
Q ss_pred ecceEEcCCcEECCCCEECC---CcEECCCCEECCCCEEe-------------ceEECCCCEECCCCEEeceEECCCCEE
Q 007143 325 RRGMYRALEIEQSRSAQVGS---FTVIGYGTKIGSNSKIS-------------DSVIGEGCTIGSNVLIEGSYIWDNVII 388 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~---~~~Ig~~~~Ig~~~~I~-------------~s~IG~~~~Ig~~~~I~~s~I~~~v~I 388 (616)
.+++.+...+.+..++.|.+ ++.+|..|.++.+++|+ +..||+++.|+++|++..+.|++.+.+
T Consensus 31 sQNI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~ 110 (184)
T KOG3121|consen 31 SQNILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHL 110 (184)
T ss_pred cceEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEe
Confidence 35777777788888888864 68888888888888885 368999999999999988888888877
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcccc
Q 007143 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSLLQ 439 (616)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~~~ 439 (616)
|.+++| |.+|++.+.|.|-++.++.+.+++|+.++++.-|
T Consensus 111 Gknavi-----------GrrCVlkdCc~ild~tVlPpet~vppy~~~~g~p 150 (184)
T KOG3121|consen 111 GKNAVI-----------GRRCVLKDCCRILDDTVLPPETLVPPYSTIGGNP 150 (184)
T ss_pred ccceeE-----------cCceEhhhheeccCCcccCcccccCCceEEcCCC
Confidence 665544 5555555556666677777778888888887765
No 211
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.74 E-value=7e-08 Score=103.56 Aligned_cols=113 Identities=14% Similarity=0.186 Sum_probs=78.1
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.+.+||||+|.|+||+ ..||+|+|++|+|||+|+++.+.. .+++|+|++....+.+.+++.. +.+..
T Consensus 5 ~i~~VILAgG~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~~--------~~~i~ 71 (366)
T PRK14489 5 QIAGVILAGGLSRRMN----GRDKALILLGGKPLIERVVDRLRP-QFARIHLNINRDPARYQDLFPG--------LPVYP 71 (366)
T ss_pred CceEEEEcCCcccCCC----CCCCceeEECCeeHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhccC--------CcEEe
Confidence 4789999999999995 249999999999999999999986 4899998777655555544322 22211
Q ss_pred EeCCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHH
Q 007143 108 IESHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKE 155 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~ 155 (616)
-......|....++.... .+..+ +|++.||+ +....+..+++.++.
T Consensus 72 d~~~g~~G~~~si~~gl~--~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 72 DILPGFQGPLSGILAGLE--HADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred cCCCCCCChHHHHHHHHH--hcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 111222466566664332 24445 99999998 555567777776543
No 212
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.74 E-value=4.2e-08 Score=97.34 Aligned_cols=95 Identities=25% Similarity=0.331 Sum_probs=71.8
Q ss_pred ceeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEec---------eEECCCCEECC
Q 007143 321 TKLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEG---------SYIWDNVIIED 390 (616)
Q Consensus 321 ~~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~ 390 (616)
-...|...|+++++.+.+.+.|.=++.++.+|+|.-++.++ ..+||+||.||.++.|.+ .+|++||.||.
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 34667889999999999988888899999999998888886 567999999999999974 46777777777
Q ss_pred Cc-EEeceEECCCcEECCCCEECCCC
Q 007143 391 GC-ELRHVIVCDGVIMKAGAVLKPGV 415 (616)
Q Consensus 391 ~~-~I~~siIg~~v~Ig~~~~I~~g~ 415 (616)
++ .+.+.++|++|+|+.|+.|..++
T Consensus 194 ns~~veGV~vGdg~VV~aGv~I~~~t 219 (271)
T COG2171 194 NSEVVEGVIVGDGCVVAAGVFITQDT 219 (271)
T ss_pred ccceEeeeEeCCCcEEecceEEeCCc
Confidence 76 34455555555555444444443
No 213
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.74 E-value=2.8e-08 Score=108.86 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=62.1
Q ss_pred CEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCC
Q 007143 358 SKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAH 432 (616)
Q Consensus 358 ~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~ 432 (616)
+.+.+|+||++|.| ++|.|.+|+||++|.|+++|.|.+|+|+++|.||++|+|. +|+|+++|+|+++++|+.+
T Consensus 323 ~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~-~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 323 GMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLR-RCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred ceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEe-eEEECCCCEECCCCEECCC
Confidence 34668999999999 7899999999999999999999999999999999999996 6777777777777666554
No 214
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.73 E-value=7.2e-08 Score=89.62 Aligned_cols=46 Identities=30% Similarity=0.349 Sum_probs=31.9
Q ss_pred EEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEccc
Q 007143 393 ELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLL 438 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~ 438 (616)
...+++||++|+||.+++|.++++||++++||++++ +++++++...
T Consensus 70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~ 119 (145)
T cd03349 70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGN 119 (145)
T ss_pred ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEec
Confidence 345677788888888888877777777777777776 4455555443
No 215
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.73 E-value=1e-07 Score=82.89 Aligned_cols=61 Identities=26% Similarity=0.263 Sum_probs=33.0
Q ss_pred EcCCcEECCCCEECC--CcEECCCCEECCCCEEeceEECCCCEECCCCE---EeceEECCCCEECCCcEEe
Q 007143 330 RALEIEQSRSAQVGS--FTVIGYGTKIGSNSKISDSVIGEGCTIGSNVL---IEGSYIWDNVIIEDGCELR 395 (616)
Q Consensus 330 ~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~---I~~s~I~~~v~Ig~~~~I~ 395 (616)
+++++.|++++.|+. .++||+++.|+++ +.|+.++.|+.++. +..++|++++.|+.++.+.
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~-----~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~ 70 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDN-----CTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKIL 70 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCC-----CEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEE
Confidence 444444444444433 2334444444444 34566666666664 4566777777777776663
No 216
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.72 E-value=9.1e-08 Score=96.94 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=44.4
Q ss_pred eecceEEcCCcEECCCCEECCCc-EECCCCEECCCCEE-eceEECCCCEECCCCEEec---------eEECCCCEECCCc
Q 007143 324 ERRGMYRALEIEQSRSAQVGSFT-VIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEG---------SYIWDNVIIEDGC 392 (616)
Q Consensus 324 ~~~~i~~~~~v~i~~~~~I~~~~-~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~---------s~I~~~v~Ig~~~ 392 (616)
.|-..|+++++.|.+.+.|..++ .||.. .| ++.| ++++||++|.|++++.|.+ ..|+++|.||.+|
T Consensus 162 VRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA 238 (319)
T TIGR03535 162 VRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANS 238 (319)
T ss_pred eeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCC
Confidence 44456666666666666666666 46653 44 3455 3566666666666666433 4455555555555
Q ss_pred EEeceEECCCcEECCCCEE
Q 007143 393 ELRHVIVCDGVIMKAGAVL 411 (616)
Q Consensus 393 ~I~~siIg~~v~Ig~~~~I 411 (616)
.| +..||++|+||+|++|
T Consensus 239 ~I-GI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 239 GL-GISLGDDCVVEAGLYV 256 (319)
T ss_pred EE-CeEECCCCEECCCCEE
Confidence 54 3333333333333333
No 217
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.69 E-value=1.8e-08 Score=90.46 Aligned_cols=104 Identities=19% Similarity=0.173 Sum_probs=83.2
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCCEE----eceEECCCCEECCCCEEec--------------eEECCCCEE
Q 007143 327 GMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKI----SDSVIGEGCTIGSNVLIEG--------------SYIWDNVII 388 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I----~~s~IG~~~~Ig~~~~I~~--------------s~I~~~v~I 388 (616)
.+-+.+++.+-..+.|.+.+.|+++|.|.+.+++ +..+||+||.|.+.++|.+ -+||.+...
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 3556677777777778899999999999999988 4789999999999998864 367777777
Q ss_pred CCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEEC
Q 007143 389 EDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVP 430 (616)
Q Consensus 389 g~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~ 430 (616)
.-+|..+...+|++-+|+..|.+++||.+.+||.||+++.|-
T Consensus 88 eVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~ 129 (190)
T KOG4042|consen 88 EVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVF 129 (190)
T ss_pred EeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEe
Confidence 777887777888888888888888887777777777777643
No 218
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.68 E-value=7.7e-08 Score=98.52 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=52.6
Q ss_pred EEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------CCcEEEEEcCCcHHHHHHHHHhcC
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------GVAEVFVFCCAHSKQVIDYLENSE 96 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------Gv~eI~vv~~~~~~~i~~~l~~~~ 96 (616)
-+||||||.||||+ ...||+|+||+ |+|+|+|+++.+... +|..+++...+..+.+++|+++..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 57999999999996 58899999999 999999999999873 355554444455788999998854
No 219
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.68 E-value=8.2e-08 Score=104.68 Aligned_cols=71 Identities=27% Similarity=0.467 Sum_probs=61.7
Q ss_pred EEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECC
Q 007143 359 KISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPA 431 (616)
Q Consensus 359 ~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~ 431 (616)
.+.+++||++|.|+ ++.|.+|+|+++|+|+.+|+|.+|+|+++|.||++|+|. +|+|+++++|+++++|+.
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence 45678999999998 899999999999999999999999999999999999997 588888888887776655
No 220
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.67 E-value=2.1e-07 Score=81.94 Aligned_cols=34 Identities=32% Similarity=0.363 Sum_probs=14.5
Q ss_pred CcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143 402 GVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (616)
Q Consensus 402 ~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v 435 (616)
.+.||++|+|+.+++|..+++||++++|++++.|
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV 89 (107)
T ss_pred CEEECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 3444444444444444444444444444444444
No 221
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=7e-08 Score=101.22 Aligned_cols=93 Identities=26% Similarity=0.402 Sum_probs=78.4
Q ss_pred CCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEE
Q 007143 338 RSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVL 417 (616)
Q Consensus 338 ~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vI 417 (616)
++..|......-+.+++..++.+.+|.|+.+|.|.. .|.+|+|+.+++|+.+|.|++|+|..+|.||.+|+|. .|+|
T Consensus 272 ~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~-~aII 348 (393)
T COG0448 272 RNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLR-RAII 348 (393)
T ss_pred CCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEE-EEEe
Confidence 344555555566777777788899999999999965 9999999999999999999999999999999999998 5888
Q ss_pred CCCcEECCCCEECCCC
Q 007143 418 SFKVVIGERFVVPAHS 433 (616)
Q Consensus 418 g~~v~Ig~~~~v~~~~ 433 (616)
..+|+|++|++|+...
T Consensus 349 Dk~v~I~~g~~i~~~~ 364 (393)
T COG0448 349 DKNVVIGEGVVIGGDK 364 (393)
T ss_pred CCCcEeCCCcEEcCCc
Confidence 8888888777776543
No 222
>PRK10191 putative acyl transferase; Provisional
Probab=98.64 E-value=2.1e-07 Score=86.32 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=4.0
Q ss_pred CCcEECCCCEE
Q 007143 332 LEIEQSRSAQV 342 (616)
Q Consensus 332 ~~v~i~~~~~I 342 (616)
.++.+++++.|
T Consensus 46 ~~a~Ig~~~~I 56 (146)
T PRK10191 46 AAATIGRRFTI 56 (146)
T ss_pred CCCEECCCeEE
Confidence 33333333333
No 223
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.64 E-value=2.2e-07 Score=88.14 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=15.7
Q ss_pred eEEcCCcEECCCCEECC--CcEECCCCEECCCC
Q 007143 328 MYRALEIEQSRSAQVGS--FTVIGYGTKIGSNS 358 (616)
Q Consensus 328 i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~ 358 (616)
+.+++++.|++++.|+. +++|++++.||++|
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~ 94 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDV 94 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCC
Confidence 44555555555555542 24555555555554
No 224
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=5e-06 Score=80.68 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=144.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
.+-+||.|-=.+|||- -|||-.|+|+|||.|+.+...++|+.+++|.+-+ +.|.+.+.+. |..+..
T Consensus 3 ~~~viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~~~------G~~avm 68 (247)
T COG1212 3 KFVVIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATDD--ERIAEAVQAF------GGEAVM 68 (247)
T ss_pred ceEEEEecchhcccCC------CCchhhhCCchHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHHHh------CCEEEe
Confidence 4567777777778887 4999999999999999999999999999888864 5677777652 223322
Q ss_pred EeCCCccCHHHHHHHHHhcccccCC--EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCccccc
Q 007143 108 IESHNIISAGDALRLIYEQNVIHGD--FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRL 183 (616)
Q Consensus 108 i~~~~~~~~gdalr~~~~~~~i~~d--fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~ 183 (616)
-..+-..|+ |-+.+...+--+.++ ++=+-||. |-...+..+++..++. +-.++|++.+-..+. ..+
T Consensus 69 T~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~----~~~~aTl~~~i~~~e-----e~~ 138 (247)
T COG1212 69 TSKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS----NADMATLAVKITDEE-----EAF 138 (247)
T ss_pred cCCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC----CcceeeeeeecCCHH-----Hhc
Confidence 222222232 333333323223344 56678998 5556777777766653 235677777665432 233
Q ss_pred CCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcCCChhhHHHHhhh
Q 007143 184 GTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDNFDYQHLRRHFVK 263 (616)
Q Consensus 184 ~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dnfd~q~lr~dfv~ 263 (616)
..+-+-++.| +.++-|+|..-|-|-.....-+ ..-|...|||-+...+|.-|..--.-.--+..-+.
T Consensus 139 nPN~VKvV~d-~~g~ALYFSRs~iP~~rd~~~~------------~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LE 205 (247)
T COG1212 139 NPNVVKVVLD-KEGYALYFSRAPIPYGRDNFGG------------TPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLE 205 (247)
T ss_pred CCCcEEEEEc-CCCcEEEEEcCCCCCcccccCC------------cchhheeehHHhHHHHHHHHHhcCCchhHHHHHHH
Confidence 3333334444 5789999988765321110000 12345679999999999877542110000000111
Q ss_pred hhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 264 GLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 264 ~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
. |.-...|.+|++.+..+-....|++++++..+-+-+
T Consensus 206 Q-LR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~ 242 (247)
T COG1212 206 Q-LRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKIL 242 (247)
T ss_pred H-HHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHH
Confidence 0 111337899999998856678999999998876544
No 225
>PLN02357 serine acetyltransferase
Probab=98.62 E-value=2e-07 Score=97.51 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=42.9
Q ss_pred eEEcCCcEECCCCEECC--CcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCCc
Q 007143 328 MYRALEIEQSRSAQVGS--FTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDGV 403 (616)
Q Consensus 328 i~~~~~v~i~~~~~I~~--~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~v 403 (616)
+.+++++.|++++.|.. +++||++++||+++.|. +++||.. |......+++|+++|.||.++.| .++.||+++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga 303 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGA 303 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCCC
Confidence 34445555554444442 34444444444444332 2222221 01111235778888888888776 456667666
Q ss_pred EECCCCEECC
Q 007143 404 IMKAGAVLKP 413 (616)
Q Consensus 404 ~Ig~~~~I~~ 413 (616)
.||++++|..
T Consensus 304 ~IGAgSVV~~ 313 (360)
T PLN02357 304 KIGAGSVVLK 313 (360)
T ss_pred EECCCCEECc
Confidence 6666666653
No 226
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-07 Score=94.24 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=76.2
Q ss_pred CEECCCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCC----
Q 007143 340 AQVGSFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPG---- 414 (616)
Q Consensus 340 ~~I~~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g---- 414 (616)
+.|-++++|-+.+++.+.++|+ |+.||.+++||++++|..|+|.+++.|.+|+.+-+|+||.++.||..+.|..-
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~ 362 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEP 362 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccccc
Confidence 4467888888888888888887 78899999999999999999999999999999999999999999998888631
Q ss_pred ---------CEECCCcEECCCCEEC
Q 007143 415 ---------VVLSFKVVIGERFVVP 430 (616)
Q Consensus 415 ---------~vIg~~v~Ig~~~~v~ 430 (616)
+++|..|.+++.+.|-
T Consensus 363 s~~~~~~a~Tilga~v~v~dev~v~ 387 (407)
T KOG1460|consen 363 SPNLPFAALTILGADVSVEDEVIVL 387 (407)
T ss_pred CCCCCcceeEEecccceecceeEEe
Confidence 4555555555555443
No 227
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.59 E-value=2.7e-07 Score=90.31 Aligned_cols=51 Identities=18% Similarity=0.357 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCC-eehHHHHHHHHHHCCCcEEEEEcCC
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVN-VPMINYTLAWLEAAGVAEVFVFCCA 83 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~ 83 (616)
+.+.+||||+|.++||+. ||+|+|++| +|||+|+++.+... +.+|+|++++
T Consensus 7 ~~i~~vILAgG~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~-~~~vvvv~~~ 58 (196)
T PRK00560 7 DNIPCVILAGGKSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKL-FKKVYISTKD 58 (196)
T ss_pred cCceEEEECCcccccCCC-----CceEEEeCCCCcHHHHHHHHHHHh-CCEEEEEECc
Confidence 457899999999999976 999999999 99999999999987 8899888875
No 228
>PLN02739 serine acetyltransferase
Probab=98.58 E-value=2.5e-07 Score=96.10 Aligned_cols=38 Identities=26% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 400 CDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 400 g~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
..+++||++|+|+.|++|..+++||++++|++|++|..
T Consensus 255 ~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 255 DRHPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 35789999999999999988999999999999999975
No 229
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.57 E-value=1.8e-06 Score=90.73 Aligned_cols=165 Identities=13% Similarity=0.253 Sum_probs=103.7
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHCC-----------CcEEEEEcC-CcHHHHHH
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAAG-----------VAEVFVFCC-AHSKQVID 90 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~G-----------v~eI~vv~~-~~~~~i~~ 90 (616)
+..+.+||||||.|||| +...||+|+||+ |+|++++.++.+...+ .-.++|+++ +..+.+++
T Consensus 13 ~~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 13 EGKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred cCCEEEEEECCCccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 34589999999999999 568899999998 7999999999999852 124568888 56788999
Q ss_pred HHHhcCCCCCCCcEEEEEeCC---------------------CccCHHHHHHHHHhccccc-----C-C-EEEEeCcee-
Q 007143 91 YLENSEWFSQPNFTVKTIESH---------------------NIISAGDALRLIYEQNVIH-----G-D-FVLISGDTV- 141 (616)
Q Consensus 91 ~l~~~~~~~~~~~~i~~i~~~---------------------~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i- 141 (616)
|+++..|.....-.|+++.+. .+.|-|+..+.+....++. + . +.+.+.|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 998865532211234433221 2357888888776554442 2 2 566666773
Q ss_pred cchhHHHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143 142 SNMLLTQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (616)
Q Consensus 142 ~~~~l~~~l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~ 207 (616)
...---.++-.|..+ ++.|.+ ++.+..+. .+-| +++.....-+|+.|.+.|.
T Consensus 170 ~~~~Dp~~lG~~~~~-----~~~~~~kvv~k~~~~-----ekvG----~l~~~~g~~~vvEysel~~ 222 (323)
T cd04193 170 VKVADPVFIGFCISK-----GADVGAKVVRKRYPT-----EKVG----VVVLVDGKPQVVEYSEISD 222 (323)
T ss_pred ccccCHHHhHHHHHc-----CCceEEEEEECCCCC-----Ccee----EEEEECCeEEEEEeecCCH
Confidence 333223445555553 466665 33433222 1223 3433223556778887764
No 230
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=98.57 E-value=5.4e-07 Score=89.51 Aligned_cols=112 Identities=28% Similarity=0.384 Sum_probs=75.7
Q ss_pred eEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCCc-HHHHHHHHHhcCCCCCCCcEEE
Q 007143 29 LQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCAH-SKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 29 l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~~-~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
+-|||+|||.|+||+. ..||.+++++|+|+|.|+|+.+.+. .+++|+|++... .+.+++.+.+ + ++.
T Consensus 1 V~aIilAaG~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~-------~v~ 69 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K-------KVK 69 (221)
T ss_dssp EEEEEEESS-STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T-------TEE
T ss_pred CEEEEeCCccchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C-------CEE
Confidence 3589999999999985 6899999999999999999999985 789999998754 5666766655 1 255
Q ss_pred EEeCCCc--cCHHHHHHHHHhcccccCCEEEEeCce---ecchhHHHHHHHHHH
Q 007143 107 TIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQEHKE 155 (616)
Q Consensus 107 ~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~---i~~~~l~~~l~~h~~ 155 (616)
++..... .|+-.+|..+... .++++++==. ++...+.++++..++
T Consensus 70 iv~GG~tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 70 IVEGGATRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp EEE--SSHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred EecCChhHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHh
Confidence 5553222 2455555543221 1677665332 555577888877665
No 231
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.57 E-value=3.8e-07 Score=88.56 Aligned_cols=96 Identities=32% Similarity=0.295 Sum_probs=65.5
Q ss_pred CCcEECCCCEECCCCEE---eceEECCCCEECCCCEEe-ceEECCCCEECC--CcEEeceEECCCcEECCCCEECCCCEE
Q 007143 344 SFTVIGYGTKIGSNSKI---SDSVIGEGCTIGSNVLIE-GSYIWDNVIIED--GCELRHVIVCDGVIMKAGAVLKPGVVL 417 (616)
Q Consensus 344 ~~~~Ig~~~~Ig~~~~I---~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~--~~~I~~siIg~~v~Ig~~~~I~~g~vI 417 (616)
.+..+|..|.++.++.+ .+.+||+++.|+++|.|. ++..++...-.. ......++||++||||.+++|.+|++|
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~I 145 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTI 145 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEE
Confidence 45556666666666664 366788888888888885 233333332222 233346888999999999999998888
Q ss_pred CCCcEECCCCE----ECCCCEEcccc
Q 007143 418 SFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 418 g~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
|+|++||++++ +|+++++...|
T Consensus 146 G~gavigagsVVtkdvp~~~iv~G~P 171 (190)
T COG0110 146 GEGAVIGAGSVVTKDVPPYGIVAGNP 171 (190)
T ss_pred CCCcEEeeCCEEeCccCCCeEEeCCc
Confidence 88888888877 46666666544
No 232
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.56 E-value=2.7e-07 Score=89.73 Aligned_cols=106 Identities=18% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
..|.+||||+|.++|| . +|+|++++|+|||+|+++.|....- .++|......++ |... + +.
T Consensus 3 ~~~~~vILAGG~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~~-------g--~~ 63 (192)
T COG0746 3 TPMTGVILAGGKSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVD-VVVISANRNQGR---YAEF-------G--LP 63 (192)
T ss_pred CCceEEEecCCccccc-c-----ccccceeCCeEHHHHHHHHhcccCC-EEEEeCCCchhh---hhcc-------C--Cc
Confidence 4589999999999999 4 9999999999999999999999865 555555444332 3322 1 23
Q ss_pred EEeCCCcc-C-HHHHHHHHHhcccccC-CEEEEeCce-ecch-hHHHHHHHHH
Q 007143 107 TIESHNII-S-AGDALRLIYEQNVIHG-DFVLISGDT-VSNM-LLTQALQEHK 154 (616)
Q Consensus 107 ~i~~~~~~-~-~gdalr~~~~~~~i~~-dfLlv~gD~-i~~~-~l~~~l~~h~ 154 (616)
++...... | ++..+.. ....+. .|++++||+ +... -+..+....+
T Consensus 64 vv~D~~~~~GPL~Gi~~a---l~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~ 113 (192)
T COG0746 64 VVPDELPGFGPLAGILAA---LRHFGTEWVLVLPCDMPFIPPELVERLLSAFK 113 (192)
T ss_pred eeecCCCCCCCHHHHHHH---HHhCCCCeEEEEecCCCCCCHHHHHHHHHhhc
Confidence 34322222 3 3333332 222334 499999999 4444 4455554433
No 233
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.48 E-value=1e-06 Score=94.74 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=71.1
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVK 106 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~ 106 (616)
..+.+||||||.++||+. +|+|+|++|+|||+|+++.+... +.+|+|+++... ...+ .. ..+.
T Consensus 173 ~~i~~iILAGG~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~--~~~~-~~--------~~v~ 235 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMGS-----DKALLSYHESNQLVHTAALLRPH-CQEVFISCRAEQ--AEQY-RS--------FGIP 235 (369)
T ss_pred CCceEEEEcCCccccCCC-----CcEEEEECCccHHHHHHHHHHhh-CCEEEEEeCCch--hhHH-hh--------cCCc
Confidence 457899999999999985 99999999999999999999864 788888776542 2222 11 1133
Q ss_pred EEeCCC-ccCHHHHHHHHHhccccc-CCEEEEeCce--ecchhHHHHHHH
Q 007143 107 TIESHN-IISAGDALRLIYEQNVIH-GDFVLISGDT--VSNMLLTQALQE 152 (616)
Q Consensus 107 ~i~~~~-~~~~gdalr~~~~~~~i~-~dfLlv~gD~--i~~~~l~~~l~~ 152 (616)
++.... ..|...++..... ... ..+++++||+ +....+..++..
T Consensus 236 ~i~d~~~~~Gpl~gi~~al~--~~~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 236 LITDSYLDIGPLGGLLSAQR--HHPDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred EEeCCCCCCCcHHHHHHHHH--hCCCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 443322 2353333333221 123 3499999999 555566777654
No 234
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.41 E-value=1.7e-06 Score=91.76 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i 105 (616)
+..+-+||||+|.++||+. +|+|+|+.|+|||+|+++.|... +.+|+|+++... .. +. .+ ..+
T Consensus 158 ~~~i~~IILAGGkSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~-~~~ViVv~~~~~--~~-~~---~~-----~~v 220 (346)
T PRK14500 158 QTPLYGLVLTGGKSRRMGK-----DKALLNYQGQPHAQYLYDLLAKY-CEQVFLSARPSQ--WQ-GT---PL-----ENL 220 (346)
T ss_pred CCCceEEEEeccccccCCC-----CcccceeCCccHHHHHHHHHHhh-CCEEEEEeCchH--hh-hc---cc-----cCC
Confidence 3478899999999999985 99999999999999999988765 789988876431 11 11 01 013
Q ss_pred EEEeC-CCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHH
Q 007143 106 KTIES-HNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH 153 (616)
Q Consensus 106 ~~i~~-~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h 153 (616)
.++.. ....|...+++..... .-...+|+++||+ +....+..+++.+
T Consensus 221 ~~I~D~~~~~GPlagI~aaL~~-~~~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 221 PTLPDRGESVGPISGILTALQS-YPGVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eEEeCCCCCCChHHHHHHHHHh-CCCCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 34332 2235666667654432 1124589999999 4445677777754
No 235
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.35 E-value=6e-07 Score=91.31 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=78.1
Q ss_pred ecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCc
Q 007143 325 RRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGV 403 (616)
Q Consensus 325 ~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v 403 (616)
.+++.+.+.+.++.+|.|+++++||++|+|+.++.|.+|+|-.+..++.++.|..+.++.+++||.+++|. +++||++|
T Consensus 262 ~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV 341 (371)
T KOG1322|consen 262 VGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNV 341 (371)
T ss_pred cccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecccEeccce
Confidence 45677888899999999999999999999999999999999999999999999999999999999999874 46667666
Q ss_pred EECCCCEECCC
Q 007143 404 IMKAGAVLKPG 414 (616)
Q Consensus 404 ~Ig~~~~I~~g 414 (616)
.|.+.-.+..|
T Consensus 342 ~V~d~~~vn~g 352 (371)
T KOG1322|consen 342 IVADEDYVNEG 352 (371)
T ss_pred EEecccccccc
Confidence 66666555543
No 236
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.33 E-value=7e-06 Score=81.49 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=75.8
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHC-CCcEEEEEcCC-cHHHHHHHHHhcCCCCCCCcE
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAA-GVAEVFVFCCA-HSKQVIDYLENSEWFSQPNFT 104 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~-Gv~eI~vv~~~-~~~~i~~~l~~~~~~~~~~~~ 104 (616)
+.+-+||+|+|+|+||+. ..||.+++++|+|||+|+|+.+... .+++|+|++.. .-..+.++... ..+-.
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-----~~~~~ 74 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKL-----SADKR 74 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhh-----ccCCe
Confidence 346799999999999997 8899999999999999999999997 57999999986 34455555531 01234
Q ss_pred EEEEeCCCc--cCHHHHHHHHHhcccccCCEEEEeCce---ecchhHHHHHH
Q 007143 105 VKTIESHNI--ISAGDALRLIYEQNVIHGDFVLISGDT---VSNMLLTQALQ 151 (616)
Q Consensus 105 i~~i~~~~~--~~~gdalr~~~~~~~i~~dfLlv~gD~---i~~~~l~~~l~ 151 (616)
+.++..... .+.-.+|..+.. -..+++|++==. ++.-.|.++++
T Consensus 75 v~~v~GG~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~ 123 (230)
T COG1211 75 VEVVKGGATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIE 123 (230)
T ss_pred EEEecCCccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHH
Confidence 666653222 123333332211 124566665333 44556778874
No 237
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.29 E-value=1.8e-05 Score=86.89 Aligned_cols=165 Identities=15% Similarity=0.267 Sum_probs=98.6
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC------------C-CcEEEEEcC-CcHHHH
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA------------G-VAEVFVFCC-AHSKQV 88 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~------------G-v~eI~vv~~-~~~~~i 88 (616)
+.++.+||||||.||||+ ...||+|+||+ |+||++++++.+... + .-.++|+++ +..+.+
T Consensus 104 ~gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 104 KGEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred cCCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 346889999999999997 48899999994 899999999999875 1 225667766 557889
Q ss_pred HHHHHhcCCCCCCCcEEEEEeC----------------------CCccCHHHHHHHHHhccccc-----C-C-EEEEeCc
Q 007143 89 IDYLENSEWFSQPNFTVKTIES----------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGD 139 (616)
Q Consensus 89 ~~~l~~~~~~~~~~~~i~~i~~----------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD 139 (616)
++|+++..|.....-.|.+..+ ..+-|-|+..+.+....++. + . +.+...|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 9999875443211112221111 12247888888776554442 2 2 5555667
Q ss_pred ee-cchhHHHHHHHHHHhhccCCC-ceEEEEEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143 140 TV-SNMLLTQALQEHKERKKKDNN-AVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (616)
Q Consensus 140 ~i-~~~~l~~~l~~h~~~~~~d~~-a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~ 207 (616)
.+ ...---.++-.+..++ . .+|+.+++. .+. .+-| ++......-.++.|.|.++
T Consensus 261 N~L~k~~DP~flG~~~~~~----~~~~~~kvvk~-~~~-----EkvG----~~~~~~g~~~vvEYsEi~~ 316 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFP----AHDVLNKCVKR-EDD-----ESVG----VFCLKDYEWQVVEYTEINE 316 (482)
T ss_pred cccccccCHHHhHHHHHCC----chhheeeeecC-CCC-----Ccee----EEEEeCCcccEEEEeccCh
Confidence 64 3232233444455432 2 345545533 222 1223 4433222336788888654
No 238
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.27 E-value=5.2e-06 Score=77.23 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=59.7
Q ss_pred ECCCCEECC-CCEEe--ceEECCCCEECCCCEEece--EECCCC-----EECC-----CcEEeceEECCCcEECCCCEEC
Q 007143 348 IGYGTKIGS-NSKIS--DSVIGEGCTIGSNVLIEGS--YIWDNV-----IIED-----GCELRHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 348 Ig~~~~Ig~-~~~I~--~s~IG~~~~Ig~~~~I~~s--~I~~~v-----~Ig~-----~~~I~~siIg~~v~Ig~~~~I~ 412 (616)
||+++.|+. .+.+. .+.||++|.|+++|.|... .-..+. .+.. ...........++.||++|+|+
T Consensus 4 iG~~s~i~~~~~~~~~~~i~IG~~~~I~~~v~i~~~~~H~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig 83 (145)
T cd03349 4 VGDYSYGSGPDCDVGGDKLSIGKFCSIAPGVKIGLGGNHPTDWVSTYPFYIFGGEWEDDAKFDDWPSKGDVIIGNDVWIG 83 (145)
T ss_pred EeCceeeCCCCceEeCCCeEECCCCEECCCCEECCCCCCCCCCccccceEeeccccccccccccccccCCcEECCCCEEC
Confidence 444444444 33332 5678888888888887432 000100 0111 1122344456689999999999
Q ss_pred CCCEECCCcEECCCCEECCCCEEcc
Q 007143 413 PGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 413 ~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
.+|+|..+++||++++|+++++|..
T Consensus 84 ~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 84 HGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CCCEEeCCCEECCCCEECCCCEEcc
Confidence 9999999999999999999999986
No 239
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.21 E-value=2.6e-06 Score=82.05 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=36.9
Q ss_pred cEEeceEECCCcEECCCCEECCCCEECCCcEECCCCE----ECCCCEEcccc
Q 007143 392 CELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV----VPAHSKVSLLQ 439 (616)
Q Consensus 392 ~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~----v~~~~~v~~~~ 439 (616)
|--++-.||+||+||.|++|.+++.||+|++|++|++ ||+++.....|
T Consensus 196 ~gdrhP~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~AvGnP 247 (269)
T KOG4750|consen 196 SGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTLAVGNP 247 (269)
T ss_pred ccccCCcccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCceecCCc
Confidence 3445568899999999999988888888888888887 56666665544
No 240
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.21 E-value=1e-05 Score=78.51 Aligned_cols=76 Identities=33% Similarity=0.434 Sum_probs=61.2
Q ss_pred ceEECCCCEECCCCEE---eceEECCCCEECCCcEEec--------------eEECCCcEECCCCEECCCCEECCCcEEC
Q 007143 362 DSVIGEGCTIGSNVLI---EGSYIWDNVIIEDGCELRH--------------VIVCDGVIMKAGAVLKPGVVLSFKVVIG 424 (616)
Q Consensus 362 ~s~IG~~~~Ig~~~~I---~~s~I~~~v~Ig~~~~I~~--------------siIg~~v~Ig~~~~I~~g~vIg~~v~Ig 424 (616)
+..||.+|.|+.+|.+ .+..|++++.++.+|.|.. ......++||++|+|+.+++|.+||+||
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG 146 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG 146 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence 4567777777777775 2556888888888887742 1123469999999999999999999999
Q ss_pred CCCEECCCCEEcc
Q 007143 425 ERFVVPAHSKVSL 437 (616)
Q Consensus 425 ~~~~v~~~~~v~~ 437 (616)
+|++|+++++|+.
T Consensus 147 ~gavigagsVVtk 159 (190)
T COG0110 147 EGAVIGAGSVVTK 159 (190)
T ss_pred CCcEEeeCCEEeC
Confidence 9999999999987
No 241
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.19 E-value=5.8e-06 Score=95.68 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=47.7
Q ss_pred ceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCC
Q 007143 362 DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHS 433 (616)
Q Consensus 362 ~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~ 433 (616)
...||+||.|+++|.|.+..+..+ ..++...+||++|+||.+++|.+|++||++++|++++.|..|.
T Consensus 131 li~IG~~~~I~~~v~l~~~~~~~~-----~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~ 197 (695)
T TIGR02353 131 LLTIGAGTIVRKEVMLLGYRAERG-----RLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQ 197 (695)
T ss_pred ceEECCCCEECCCCEEEcccCCCC-----ceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCc
Confidence 567888888888888865433222 2234455778888888888888888888888888887765544
No 242
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.18 E-value=6.9e-06 Score=95.03 Aligned_cols=69 Identities=23% Similarity=0.430 Sum_probs=49.6
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Q 007143 363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVS 436 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~ 436 (616)
+.||++|.|+++|.|... ..++..+ .+.+++||++|+||++++|.+|++||++++||++++++.+..+.
T Consensus 617 v~IGd~~~I~~~~~i~~h-~~~~~~~----~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~~SvV~~g~~vp 685 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTH-LFEDRVM----KSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGPDSLVMKGEEVP 685 (695)
T ss_pred eEECCCCEECCCCEEEec-ccccccc----ccCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCcccC
Confidence 588999999998888643 2222222 34566778888888888888888888888888888777665554
No 243
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=97.98 E-value=2.5e-05 Score=74.50 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=54.3
Q ss_pred ceEEcCCcEECCCCEEC--CCcEECCCCEECCCCEEe-ceEECCCCEECCCCEEeceEECCCCEECCCcEE-eceEECCC
Q 007143 327 GMYRALEIEQSRSAQVG--SFTVIGYGTKIGSNSKIS-DSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCEL-RHVIVCDG 402 (616)
Q Consensus 327 ~i~~~~~v~i~~~~~I~--~~~~Ig~~~~Ig~~~~I~-~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I-~~siIg~~ 402 (616)
++-+++++.|+++..|. ..++||+.+.||++|.|. +++||..-.= +--.+-.|+++|.||.++.| .+..||++
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~---~g~RhPtIg~~V~IGagAkILG~I~IGd~ 143 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKE---SGKRHPTIGNGVYIGAGAKILGNIEIGDN 143 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCc---CCCCCCccCCCeEECCCCEEEcceEECCC
Confidence 55678888888888775 367888888777776553 4444443221 11235678888888888865 45566666
Q ss_pred cEECCCCEECC
Q 007143 403 VIMKAGAVLKP 413 (616)
Q Consensus 403 v~Ig~~~~I~~ 413 (616)
+.||++++|..
T Consensus 144 akIGA~sVVlk 154 (194)
T COG1045 144 AKIGAGSVVLK 154 (194)
T ss_pred CEECCCceEcc
Confidence 66666666553
No 244
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.83 E-value=1.9e-05 Score=71.32 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=76.0
Q ss_pred eeecceEEcCCcEECCCCEEC---CCcEECCCCEECCCCEEec--------------eEECCCCEECCCCEEeceEECCC
Q 007143 323 LERRGMYRALEIEQSRSAQVG---SFTVIGYGTKIGSNSKISD--------------SVIGEGCTIGSNVLIEGSYIWDN 385 (616)
Q Consensus 323 ~~~~~i~~~~~v~i~~~~~I~---~~~~Ig~~~~Ig~~~~I~~--------------s~IG~~~~Ig~~~~I~~s~I~~~ 385 (616)
..|+.+.+++++.++|.+++. +..+||+++.|.+.++|.+ .+||.+....-+|......+|++
T Consensus 22 ~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd~ 101 (190)
T KOG4042|consen 22 DIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGDR 101 (190)
T ss_pred ccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcCc
Confidence 456788888888888888775 5789999999999888854 45666666555555555566666
Q ss_pred CEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 386 VIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 386 v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
.+|+ ..+.+|+|+.+..||+||.+|+|-..-.+|+++.|-.
T Consensus 102 NVie-----------skayvg~gv~vssgC~vGA~c~v~~~q~lpent~vYg 142 (190)
T KOG4042|consen 102 NVIE-----------SKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTSVYG 142 (190)
T ss_pred ceEe-----------eeeEecCCcEEcCCceeccceEEecccccCCcceEEc
Confidence 5554 4555566777777777777888888888888888865
No 245
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.78 E-value=0.00055 Score=67.69 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=73.5
Q ss_pred EEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEe
Q 007143 31 AILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIE 109 (616)
Q Consensus 31 aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~ 109 (616)
|||.|=+.++|+- -|.|+|++|+|||+|+++.+.+++ +++|+|.+.. +.+.+.+.+. +..+.+..
T Consensus 2 aiIpAR~gS~rlp------~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~~~~------g~~v~~~~ 67 (217)
T PF02348_consen 2 AIIPARGGSKRLP------GKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDD--EEIDDIAEEY------GAKVIFRR 67 (217)
T ss_dssp EEEEE-SSSSSST------TGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHT------TSEEEE--
T ss_pred EEEecCCCCCCCC------cchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHHHHc------CCeeEEcC
Confidence 7888888888887 599999999999999999999984 7888777754 5566666552 34565554
Q ss_pred CCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhh
Q 007143 110 SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERK 157 (616)
Q Consensus 110 ~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~ 157 (616)
.....++......+.....-..+ ++.+.||. +....+..+++.+++..
T Consensus 68 ~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~ 118 (217)
T PF02348_consen 68 GSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREAN 118 (217)
T ss_dssp TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHST
T ss_pred hhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCc
Confidence 43333333222222111111233 78888898 45568899999888864
No 246
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.58 E-value=0.00018 Score=69.66 Aligned_cols=67 Identities=28% Similarity=0.276 Sum_probs=45.4
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEEcc
Q 007143 363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKVSL 437 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v~~ 437 (616)
.+||+-.+||.+|. |+.++++|. +-+++--.. =.||+|+.|+.|+.|-.|++||+|++|++|++|..
T Consensus 169 vvigeTAvvg~~vS-----ilH~Vtlgg--tgk~~gdrh-P~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 169 VVIGETAVVGDNVS-----ILHPVTLGG--TGKGSGDRH-PKIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred eeecceeEecccee-----eecceeecc--ccccccccC-CcccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 35555555554433 344444442 223333333 38999999999999999999999999999999975
No 247
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.41 E-value=0.00054 Score=66.67 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=37.9
Q ss_pred CCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEe-ceEECCCcEECCCCEECCCCEECCCcEECCCCE
Q 007143 355 GSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELR-HVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFV 428 (616)
Q Consensus 355 g~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~-~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~ 428 (616)
|+++.++-.++|+...+|+++.|.+.++..+++|+.+|.+. +.+++.++.||.++.|....++...-.||+++.
T Consensus 26 G~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~ 100 (277)
T COG4801 26 GKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVI 100 (277)
T ss_pred cccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceE
Confidence 33333444455666666666666666666666666666553 344445555555555554333333333343333
No 248
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.39 E-value=0.0069 Score=58.81 Aligned_cols=211 Identities=16% Similarity=0.196 Sum_probs=123.0
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEE
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKT 107 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~ 107 (616)
..-|||+|-|.+.|.. -|-+.+++|+|||.|+++.+..++.=+-+|+.+. .+.|.+.-.+. |.++.+
T Consensus 3 ~~iAiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsD-s~~Il~~A~~y------gak~~~ 69 (228)
T COG1083 3 KNIAIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSD-SEEILEEAKKY------GAKVFL 69 (228)
T ss_pred ceEEEEeccCCCCcCC------ccchHHhCCcchHHHHHHHHhcCCccceEEEcCC-cHHHHHHHHHh------Cccccc
Confidence 3568999988888876 5999999999999999999999985444444443 45555544431 223322
Q ss_pred Ee-----CCCccCHHHHHHHHHhcccccCC-EEEEeCce--ecchhHHHHHHHHHHhhccCCCceEEEEEecCCCCCCCc
Q 007143 108 IE-----SHNIISAGDALRLIYEQNVIHGD-FVLISGDT--VSNMLLTQALQEHKERKKKDNNAVMTMIIKKSKPSPITH 179 (616)
Q Consensus 108 i~-----~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD~--i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~ 179 (616)
.. ++...+.-.++..+.... +..+ .+++.+-. ....+|+.+++.+.+.. .+++++.+-.+..|.
T Consensus 70 ~Rp~~LA~D~ast~~~~lh~le~~~-~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~---~~sl~sa~e~e~~p~---- 141 (228)
T COG1083 70 KRPKELASDRASTIDAALHALESFN-IDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQ---YDSLFSAVECEHHPY---- 141 (228)
T ss_pred cCChhhccCchhHHHHHHHHHHHhc-cccCeeEEeccCccccchhHHHHHHHHHhcCC---CcceEEEeecccchH----
Confidence 21 222223323444433322 3334 66666544 78889999999998764 456666554443321
Q ss_pred ccccCCCceEEEEeCCCCeEEEeeecCCCCCcceEeehHhhhcCCceEEEecccc-ceeEeeCHhHHhhhhcCCChhhHH
Q 007143 180 QSRLGTDELFMAIDPNTKQLLYYEDKADHSKGTICLDKMLLAENPSISLHNDKQD-CYIDICSPEVLSLFTDNFDYQHLR 258 (616)
Q Consensus 180 ~~r~~~~~~vv~id~~~~rvl~~~e~p~~~~~~~~l~~~l~~~~~~~~ir~dl~d-~gIyIcsp~vl~lf~dnfd~q~lr 258 (616)
|. +.. +.+.+..+.+.|........+++. +.+ .-|||.+..+| .++
T Consensus 142 --k~------f~~--~~~~~~~~~~~~~~~~rrQ~Lpk~-------------Y~~NgaiYi~~~~~l---~e~------- 188 (228)
T COG1083 142 --KA------FSL--NNGEVKPVNEDPDFETRRQDLPKA-------------YRENGAIYINKKDAL---LEN------- 188 (228)
T ss_pred --HH------HHh--cCCceeecccCCccccccccchhh-------------hhhcCcEEEehHHHH---hhc-------
Confidence 21 111 235666666655422233333332 222 34888877644 221
Q ss_pred HHhhhhhhhccccCceEEEEEccccchhhccChhhHHHHhhhh
Q 007143 259 RHFVKGLLLDDIMGYKIFTHEIHSSYAARIDNYRSYDIVSKDI 301 (616)
Q Consensus 259 ~dfv~~~l~~~i~g~~I~~~~~~~~y~~~V~s~~sY~~a~~di 301 (616)
+- .-+.....|++++.-..+|.+.+++.-+..-+
T Consensus 189 ~~---------~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 189 DC---------FFIPNTILYEMPEDESIDIDTELDLEIAENLI 222 (228)
T ss_pred Cc---------eecCCceEEEcCcccccccccHHhHHHHHHHh
Confidence 00 12345566778766778899998887665443
No 249
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.25 E-value=0.00018 Score=49.86 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=16.9
Q ss_pred eEECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143 397 VIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (616)
Q Consensus 397 siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v 429 (616)
+.|+++++|++++.|.++++||++++|+++++|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 344555555555555555555555555555444
No 250
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.23 E-value=0.00045 Score=47.41 Aligned_cols=29 Identities=24% Similarity=0.521 Sum_probs=10.5
Q ss_pred ECCCcEECCCCEECCCCEECCCcEECCCCEE
Q 007143 399 VCDGVIMKAGAVLKPGVVLSFKVVIGERFVV 429 (616)
Q Consensus 399 Ig~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v 429 (616)
||++|+||.++.| |+.||++|.|++|++|
T Consensus 4 IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 4 IGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp E-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred ECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 3444444444444 2444444444444433
No 251
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.12 E-value=0.011 Score=61.43 Aligned_cols=160 Identities=15% Similarity=0.233 Sum_probs=98.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcCCc-HHHHHHHHHhcCCCCC
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFSQ 100 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~~ 100 (616)
++-+|+||||.||||+- +.||.|+||. +++++++.++.+... |+. -.+|.++.. .+...+|+++..+. .
T Consensus 3 kvavl~LaGG~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~-~ 78 (300)
T cd00897 3 KLVVLKLNGGLGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGV-N 78 (300)
T ss_pred cEEEEEecCCcccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCC-c
Confidence 46789999999999974 7899999996 599999999998763 332 466777765 56788898874331 1
Q ss_pred CCcEEEEEe------------------------CCCccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhHHHH
Q 007143 101 PNFTVKTIE------------------------SHNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQA 149 (616)
Q Consensus 101 ~~~~i~~i~------------------------~~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~~ 149 (616)
..|.+.. .-.+-|-|+..+.+....++. + . +.+.+.|.+...-=-.+
T Consensus 79 --~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~ 156 (300)
T cd00897 79 --VDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRI 156 (300)
T ss_pred --cCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHH
Confidence 1111111 012247788877776555542 2 2 67777898654322235
Q ss_pred HHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143 150 LQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (616)
Q Consensus 150 l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~ 207 (616)
+-.|..+ ++.+++ ++.+..+. .+-| +++.....-+|+.|.+.|.
T Consensus 157 lg~~~~~-----~~~~~~evv~Kt~~d-----ek~G----~l~~~~g~~~vvEyse~p~ 201 (300)
T cd00897 157 LNHMVDN-----KAEYIMEVTDKTRAD-----VKGG----TLIQYEGKLRLLEIAQVPK 201 (300)
T ss_pred HHHHHhc-----CCceEEEEeecCCCC-----Cccc----EEEEECCEEEEEEeccCCH
Confidence 5555553 466665 34443332 1323 3433223456888888764
No 252
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.06 E-value=0.082 Score=58.17 Aligned_cols=160 Identities=14% Similarity=0.230 Sum_probs=95.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcCCc-HHHHHHHHHhcCCCCC
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAH-SKQVIDYLENSEWFSQ 100 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~~ 100 (616)
++-+|+||||.||||+- ..||.|+|+. |+++++.+++.+... |+. -.+|.++.. .+..++|+++..+.
T Consensus 79 k~avlkLnGGlGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~-- 153 (469)
T PLN02474 79 KLVVLKLNGGLGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS-- 153 (469)
T ss_pred cEEEEEecCCcccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC--
Confidence 56789999999999996 7899999995 599999998887653 433 346777754 56688888874432
Q ss_pred CCcEEEEEeC------------------------CCccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhHHHH
Q 007143 101 PNFTVKTIES------------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLLTQA 149 (616)
Q Consensus 101 ~~~~i~~i~~------------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l~~~ 149 (616)
+..|++..+ -.+-|-||..+.+....++. + . +.+.+.|.+...-=-.+
T Consensus 154 -~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~ 232 (469)
T PLN02474 154 -NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKI 232 (469)
T ss_pred -ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHH
Confidence 112222211 01246778777665544432 2 2 66677788644322235
Q ss_pred HHHHHHhhccCCCceEEEEEe-cCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143 150 LQEHKERKKKDNNAVMTMIIK-KSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (616)
Q Consensus 150 l~~h~~~~~~d~~a~mT~v~~-~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~ 207 (616)
+..|... ++.++|=+. +..+. .+-| .++..| ..-+|+.|.+.|.
T Consensus 233 lg~~~~~-----~~e~~~ev~~Kt~~d-----~kgG---~l~~~d-gk~~lvEysqvp~ 277 (469)
T PLN02474 233 LNHLIQN-----KNEYCMEVTPKTLAD-----VKGG---TLISYE-GKVQLLEIAQVPD 277 (469)
T ss_pred HHHHHhc-----CCceEEEEeecCCCC-----CCcc---EEEEEC-CEEEEEEEecCCH
Confidence 5555553 355554333 22221 1222 123333 3456888888764
No 253
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.01 E-value=0.00072 Score=46.42 Aligned_cols=12 Identities=50% Similarity=1.005 Sum_probs=3.8
Q ss_pred ECCCCEECCCCE
Q 007143 365 IGEGCTIGSNVL 376 (616)
Q Consensus 365 IG~~~~Ig~~~~ 376 (616)
||++|.||.+|.
T Consensus 4 IG~~~~ig~~~~ 15 (34)
T PF14602_consen 4 IGDNCFIGANST 15 (34)
T ss_dssp E-TTEEE-TT-E
T ss_pred ECCCEEECcccc
Confidence 444444444433
No 254
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.00 E-value=0.00041 Score=48.05 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=14.8
Q ss_pred cEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143 403 VIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (616)
Q Consensus 403 v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v 435 (616)
++||++++|++++.|..+++||++++|++++.|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 344444444444444444444444444444443
No 255
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.99 E-value=0.0023 Score=62.33 Aligned_cols=91 Identities=10% Similarity=0.203 Sum_probs=66.1
Q ss_pred eeeecceEEcCCcEECCCCEECCCcEECCCCEECCCCEEeceEECCCCEECCCCEEe-ceEECCCCEECCCcEEec-eEE
Q 007143 322 KLERRGMYRALEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEGCTIGSNVLIE-GSYIWDNVIIEDGCELRH-VIV 399 (616)
Q Consensus 322 ~~~~~~i~~~~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~-~s~I~~~v~Ig~~~~I~~-siI 399 (616)
+.....+....++.|++.+.+ ...++|+...+|+++.|...+++.+|+|+.+|.+. |.....++.||.++.|++ -++
T Consensus 11 r~e~~~ivv~gdViIG~nS~l-~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v 89 (277)
T COG4801 11 RVEEAIIVVKGDVIIGKNSML-KYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTV 89 (277)
T ss_pred ceeeeeEEEeccEEEccccee-eeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEE
Confidence 344556667777888888888 45578888888999999888888999999988884 666677777777777743 344
Q ss_pred CCCcEECCCCEECC
Q 007143 400 CDGVIMKAGAVLKP 413 (616)
Q Consensus 400 g~~v~Ig~~~~I~~ 413 (616)
...-.||+++.|..
T Consensus 90 ~gdLdig~dV~Ieg 103 (277)
T COG4801 90 IGDLDIGADVIIEG 103 (277)
T ss_pred ecccccccceEEec
Confidence 44555666666653
No 256
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.98 E-value=0.0017 Score=62.37 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCcccceeCC--eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhc
Q 007143 49 RPKVLLPLVN--VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (616)
Q Consensus 49 ~PK~Llpi~g--~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~ 126 (616)
.+|+|+++.| +|||+|+++.+. ..+.+|+|+++.+. .+ .. ..++++. +...+.|.......+.
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~-~~~~~iivv~~~~~-~~----~~--------~~~~~i~-d~~~g~gpl~~~~~gl 67 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVG-QRCAPVFVMAAPGQ-PL----PE--------LPAPVLR-DELRGLGPLPATGRGL 67 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHh-hcCCEEEEECCCCc-cc----cc--------CCCCEec-cCCCCCCcHHHHHHHH
Confidence 4899999999 999999999876 46899999997542 11 11 1223343 2223334333222111
Q ss_pred c---cccCC-EEEEeCce--ecchhHHHHHHHHH
Q 007143 127 N---VIHGD-FVLISGDT--VSNMLLTQALQEHK 154 (616)
Q Consensus 127 ~---~i~~d-fLlv~gD~--i~~~~l~~~l~~h~ 154 (616)
. .-..+ +++++||+ |....+..+++.++
T Consensus 68 ~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~ 101 (178)
T PRK00576 68 RAAAEAGARLAFVCAVDMPYLTVELIDDLARPAA 101 (178)
T ss_pred HHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 0 11234 99999999 55556777776543
No 257
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=96.84 E-value=0.038 Score=61.06 Aligned_cols=198 Identities=11% Similarity=0.190 Sum_probs=112.3
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------------CC-cEEEEEcCCc-HH
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------------GV-AEVFVFCCAH-SK 86 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------------Gv-~eI~vv~~~~-~~ 86 (616)
..++-+|+||||.||||+- ..||.|++|+ ++++++...+.+... ++ --.+|.++.. .+
T Consensus 114 ~gkvavvlLAGGqGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 114 EGKLAVVLLSGGQGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred cCCEEEEEeCCCcccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 3456788999999999985 7899999885 799999999987542 11 1357788855 67
Q ss_pred HHHHHHHhcCCCCCCCcEEEEEeC---------------------CCccCHHHHHHHHHhccccc-----C-C-EEEEeC
Q 007143 87 QVIDYLENSEWFSQPNFTVKTIES---------------------HNIISAGDALRLIYEQNVIH-----G-D-FVLISG 138 (616)
Q Consensus 87 ~i~~~l~~~~~~~~~~~~i~~i~~---------------------~~~~~~gdalr~~~~~~~i~-----~-d-fLlv~g 138 (616)
..++|+++..+.....-.|++..+ ..+-|-|+..+.+....++. + . +.+...
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 270 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGV 270 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 788999874432111112333221 12358899888776655543 2 2 455555
Q ss_pred cee-cchhHHHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEe--CCCCeEEEeeecCCCCCcceE
Q 007143 139 DTV-SNMLLTQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAID--PNTKQLLYYEDKADHSKGTIC 214 (616)
Q Consensus 139 D~i-~~~~l~~~l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id--~~~~rvl~~~e~p~~~~~~~~ 214 (616)
|.+ ...---.++-.+..+ ++.+.+ ++++..|. .+-| ++... ...-.|+.|.+.+.
T Consensus 271 DN~L~~~~DP~flG~~~~~-----~~d~~~kVv~K~~~~-----EkvG----~i~~~~~~g~~~vvEYsEl~~------- 329 (493)
T PLN02435 271 DNALVRVADPTFLGYFIDK-----GVASAAKVVRKAYPQ-----EKVG----VFVRRGKGGPLTVVEYSELDQ------- 329 (493)
T ss_pred ccccccccCHHHHHHHHhc-----CCceEEEeeecCCCC-----Ccee----EEEEecCCCCEEEEEeccCCH-------
Confidence 663 333333445555553 355444 34343322 1223 44432 12344778877653
Q ss_pred eehHhhhc-CC-ceEEEeccccceeEeeCHhHHhhhhc
Q 007143 215 LDKMLLAE-NP-SISLHNDKQDCYIDICSPEVLSLFTD 250 (616)
Q Consensus 215 l~~~l~~~-~~-~~~ir~dl~d~gIyIcsp~vl~lf~d 250 (616)
++-.. .+ .=.+.+...+..+++||-++|.-+.+
T Consensus 330 ---~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 330 ---AMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ---HHHhccCccccccccchhhHHHhhccHHHHHHHHH
Confidence 11110 00 01233444455667788888876654
No 258
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=96.75 E-value=0.0047 Score=67.43 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=34.9
Q ss_pred CEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCC
Q 007143 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDG 402 (616)
Q Consensus 352 ~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~ 402 (616)
+.+.+++.|-+|+|..+|.||++++|++|.|+.++.||.+|.|.++-+...
T Consensus 274 ~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~~~ 324 (414)
T PF07959_consen 274 SDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDINSW 324 (414)
T ss_pred cccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccccc
Confidence 445566666777777777777777777777777777777777766554443
No 259
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.022 Score=55.61 Aligned_cols=110 Identities=22% Similarity=0.354 Sum_probs=75.6
Q ss_pred eEEEEEeCCCC-CCCCCCCCCCCcccceeCCeehHHHHHHHHHHCC-CcEEEEEcCCc--HHHHHHHHHhcCCCCCCCcE
Q 007143 29 LQAILLADSFT-TKFRPITLERPKVLLPLVNVPMINYTLAWLEAAG-VAEVFVFCCAH--SKQVIDYLENSEWFSQPNFT 104 (616)
Q Consensus 29 l~aVILA~g~~-~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~G-v~eI~vv~~~~--~~~i~~~l~~~~~~~~~~~~ 104 (616)
+-++|+.+-.| +|+. -|.|+||++.|||+|+|+.+.++. ..+++|.++.. .+.++.+..+. |
T Consensus 3 ~I~~IiQARmgStRLp------gKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~------G-- 68 (241)
T COG1861 3 MILVIIQARMGSTRLP------GKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH------G-- 68 (241)
T ss_pred cEEEEeeecccCccCC------cchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc------C--
Confidence 45667777665 5554 599999999999999999999984 67898888743 45677777652 2
Q ss_pred EEEEeCCCccCHHHHHHHH-HhcccccCC-EEEEeCce-ecch-hHHHHHHHHHHh
Q 007143 105 VKTIESHNIISAGDALRLI-YEQNVIHGD-FVLISGDT-VSNM-LLTQALQEHKER 156 (616)
Q Consensus 105 i~~i~~~~~~~~gdalr~~-~~~~~i~~d-fLlv~gD~-i~~~-~l~~~l~~h~~~ 156 (616)
+.+.. .+..++|.-+ .+......+ ++=+.||- +.+. -+..+++.|.+.
T Consensus 69 ~~vfr----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~ 120 (241)
T COG1861 69 FYVFR----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEK 120 (241)
T ss_pred eeEec----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhc
Confidence 22332 2445666544 233334445 77789998 4444 457788888875
No 260
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=96.65 E-value=0.0073 Score=71.53 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=73.8
Q ss_pred CEEEEeCceecchh--HHHHHHHHHHhhccCCCceEEEEEecCCCCCCCcccccCCCceEEEEeCCC-CeEEEeeecCCC
Q 007143 132 DFVLISGDTVSNML--LTQALQEHKERKKKDNNAVMTMIIKKSKPSPITHQSRLGTDELFMAIDPNT-KQLLYYEDKADH 208 (616)
Q Consensus 132 dfLlv~gD~i~~~~--l~~~l~~h~~~~~~d~~a~mT~v~~~~~~~~~~~~~r~~~~~~vv~id~~~-~rvl~~~e~p~~ 208 (616)
..||.+||++..++ +.. -+++.+..+.-...+. -.+..| ||+.|.++ ++|-.+-.||..
T Consensus 154 g~li~~gDv~~~f~~~~~~-----------~~~~~~~~~~~~~~~~---~~~~HG----Vfv~~~~~~~~~~~~LqKps~ 215 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD-----------IPEADVVCYGLWVDPS---LATNHG----VFVSSRKSPERLDFMLQKPSL 215 (974)
T ss_pred ceEEEecchhhhccccccC-----------CCccCeEEEEeccChh---hccCce----EEEeCCCChHHHHHHhcCCCH
Confidence 58999999754332 111 1223333333333332 223344 88888653 677778788752
Q ss_pred CCcceEeehHhhhcCCceEEEeccccceeEeeCHhHHhhhhcC-C-------ChhhHHHHhhhhhhh------ccccCce
Q 007143 209 SKGTICLDKMLLAENPSISLHNDKQDCYIDICSPEVLSLFTDN-F-------DYQHLRRHFVKGLLL------DDIMGYK 274 (616)
Q Consensus 209 ~~~~~~l~~~l~~~~~~~~ir~dl~d~gIyIcsp~vl~lf~dn-f-------d~q~lr~dfv~~~l~------~~i~g~~ 274 (616)
. .+ -.+... ..-|+|.|||+++....+.+..- + -+-++-.||+..+=. .++++.+
T Consensus 216 e--el---~a~~~~------~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~ 284 (974)
T PRK13412 216 E--EL---GGLSKT------HLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALS 284 (974)
T ss_pred H--HH---HhhhcC------CeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccc
Confidence 1 11 112222 35588999999999988865421 1 012334577654321 1455556
Q ss_pred EEEEEccccchhhccChhhHH
Q 007143 275 IFTHEIHSSYAARIDNYRSYD 295 (616)
Q Consensus 275 I~~~~~~~~y~~~V~s~~sY~ 295 (616)
+....+++.--..++|-+.|.
T Consensus 285 ~~i~~L~~~~F~H~GTs~E~l 305 (974)
T PRK13412 285 VAILPLPGGEFYHYGTSRELI 305 (974)
T ss_pred eEEEEcCCceeEEecCcHHHh
Confidence 666666655445566665555
No 261
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.34 E-value=0.012 Score=61.40 Aligned_cols=66 Identities=18% Similarity=0.365 Sum_probs=52.9
Q ss_pred EEEEEeCCCCCCCCCCCCCCCccccee---CCeehHHHHHHHHHHCC---------CcEEEEEcCCc-HHHHHHHHHhcC
Q 007143 30 QAILLADSFTTKFRPITLERPKVLLPL---VNVPMINYTLAWLEAAG---------VAEVFVFCCAH-SKQVIDYLENSE 96 (616)
Q Consensus 30 ~aVILA~g~~~R~~PlT~~~PK~Llpi---~g~PlI~y~Le~L~~~G---------v~eI~vv~~~~-~~~i~~~l~~~~ 96 (616)
-+|+||+|.||||+- +.||.++|| .|++++++.++.+.... .--.+|.++.. .+..++++++..
T Consensus 2 a~vllaGG~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~ 78 (315)
T cd06424 2 VFVLVAGGLGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENN 78 (315)
T ss_pred EEEEecCCCccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCC
Confidence 478999999999985 789999999 47999999999987632 12467888854 677899998766
Q ss_pred CC
Q 007143 97 WF 98 (616)
Q Consensus 97 ~~ 98 (616)
|.
T Consensus 79 yF 80 (315)
T cd06424 79 YF 80 (315)
T ss_pred cc
Confidence 53
No 262
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.13 E-value=0.16 Score=57.80 Aligned_cols=135 Identities=15% Similarity=0.223 Sum_probs=85.4
Q ss_pred CeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC--------C----CcEEEEEcCCc-HHHHHHH
Q 007143 28 PLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA--------G----VAEVFVFCCAH-SKQVIDY 91 (616)
Q Consensus 28 ~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~--------G----v~eI~vv~~~~-~~~i~~~ 91 (616)
++-+|+||+|.||||+- ..||.++|++ |++++++.++.+... + .--.+|.++.. .+...+|
T Consensus 128 kvavllLaGGlGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~ 204 (615)
T PLN02830 128 NAAFVLVAGGLGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKL 204 (615)
T ss_pred cEEEEEecCCcccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHH
Confidence 56789999999999985 6799999983 799999999998664 1 12467888855 6778899
Q ss_pred HHhcCCCCCCCcEEEE--------Ee--------CC--------CccCHHHHHHHHHhccccc-----C-CE-EEEeCce
Q 007143 92 LENSEWFSQPNFTVKT--------IE--------SH--------NIISAGDALRLIYEQNVIH-----G-DF-VLISGDT 140 (616)
Q Consensus 92 l~~~~~~~~~~~~i~~--------i~--------~~--------~~~~~gdalr~~~~~~~i~-----~-df-Llv~gD~ 140 (616)
+++..|.....-.|++ +. .. .+.|-|+..+.+....++. + .+ .+...|.
T Consensus 205 ~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN 284 (615)
T PLN02830 205 LERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTN 284 (615)
T ss_pred HHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccc
Confidence 9886663221112222 11 11 2347888888776665553 2 24 4444455
Q ss_pred -ecchhHHHHHHHHHHhhccCCCceEEEEEe
Q 007143 141 -VSNMLLTQALQEHKERKKKDNNAVMTMIIK 170 (616)
Q Consensus 141 -i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~ 170 (616)
+.....-.++-.+..+ ++.|.+-+.
T Consensus 285 ~L~~~Adp~flG~~~~~-----~~d~~~kvv 310 (615)
T PLN02830 285 GLVFKAIPAALGVSATK-----GFDMNSLAV 310 (615)
T ss_pred hhhhcccHHHhHHHHhc-----CCceEEEEE
Confidence 3333335666666654 355555433
No 263
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=95.94 E-value=0.098 Score=56.83 Aligned_cols=66 Identities=14% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHHC----CCc-EEEEEcCCcHHHHHHHHHh
Q 007143 26 RQPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEAA----GVA-EVFVFCCAHSKQVIDYLEN 94 (616)
Q Consensus 26 ~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~~----Gv~-eI~vv~~~~~~~i~~~l~~ 94 (616)
..++-+|+||||.|+||+- ..||.|++|. |+++++.+.+.+..+ +++ ..+|.++...++-..|+..
T Consensus 103 ~~klAvl~LaGGqGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~ 174 (472)
T COG4284 103 LGKLAVLKLAGGQGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKS 174 (472)
T ss_pred cCceEEEEecCCccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhh
Confidence 5568899999999999986 6799999999 899999999987765 433 3566676544444444433
No 264
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=95.52 E-value=0.32 Score=53.21 Aligned_cols=161 Identities=20% Similarity=0.324 Sum_probs=94.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccceeC-CeehHHHHHHHHHH----CCCc-EEEEEcCCc-HHHHHHHHHhcCCCC
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLPLV-NVPMINYTLAWLEA----AGVA-EVFVFCCAH-SKQVIDYLENSEWFS 99 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~-g~PlI~y~Le~L~~----~Gv~-eI~vv~~~~-~~~i~~~l~~~~~~~ 99 (616)
.++-+|+||||.||||+- ..||.|+||. ++.+++..++.+.. .|+. -.+|.++.. .+.+++|+++ ....
T Consensus 55 ~kvavl~LaGGlGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-yfg~ 130 (420)
T PF01704_consen 55 GKVAVLKLAGGLGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-YFGL 130 (420)
T ss_dssp TCEEEEEEEESBSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-GCGS
T ss_pred CCEEEEEEcCcccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-hcCC
Confidence 357889999999999985 7899999996 58999999988876 2433 467777754 6778888887 2221
Q ss_pred CCCcEEEE--------Ee--------CCC----------ccCHHHHHHHHHhccccc-----C-C-EEEEeCceecchhH
Q 007143 100 QPNFTVKT--------IE--------SHN----------IISAGDALRLIYEQNVIH-----G-D-FVLISGDTVSNMLL 146 (616)
Q Consensus 100 ~~~~~i~~--------i~--------~~~----------~~~~gdalr~~~~~~~i~-----~-d-fLlv~gD~i~~~~l 146 (616)
... |.+ +. .+. +-|-||..+.+....++. + . +.+.+.|.+...-=
T Consensus 131 ~~~--v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 131 DVD--VFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp SCC--EEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred Ccc--eEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 111 211 11 111 238888888776555442 2 3 67778898554422
Q ss_pred HHHHHHHHHhhccCCCceEEE-EEecCCCCCCCcccccCCCceEEEEeCCCCeEEEeeecCC
Q 007143 147 TQALQEHKERKKKDNNAVMTM-IIKKSKPSPITHQSRLGTDELFMAIDPNTKQLLYYEDKAD 207 (616)
Q Consensus 147 ~~~l~~h~~~~~~d~~a~mT~-v~~~~~~~~~~~~~r~~~~~~vv~id~~~~rvl~~~e~p~ 207 (616)
-.++-.|..+ ++.+.| ++.+..+. .+-| ++......-+|+.|.+.|.
T Consensus 209 p~~lG~~~~~-----~~~~~~evv~Kt~~d-----ek~G----vl~~~~G~~~vvEysqip~ 256 (420)
T PF01704_consen 209 PVFLGYMIEK-----NADFGMEVVPKTSPD-----EKGG----VLCRYDGKLQVVEYSQIPK 256 (420)
T ss_dssp HHHHHHHHHT-----T-SEEEEEEE-CSTT-----TSSE----EEEEETTEEEEEEGGGS-H
T ss_pred HHHHHHHHhc-----cchhheeeeecCCCC-----Ccee----EEEEeCCccEEEEeccCCH
Confidence 3456666554 344433 33333322 1222 4433323456777777654
No 265
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.52 E-value=0.062 Score=52.18 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=58.8
Q ss_pred eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccccc-CCEEEEe
Q 007143 59 VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH-GDFVLIS 137 (616)
Q Consensus 59 ~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~-~dfLlv~ 137 (616)
+|||+|+++.+..+++.+++|++++ +.+.+++.. ..+.++.+.. .|++.+++.......-. +.++++.
T Consensus 30 ~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~--------~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~ 98 (195)
T TIGR03552 30 LAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN--------LGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh--------cCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEe
Confidence 7999999999999988888888774 445555433 1244555443 38899988664331111 2399999
Q ss_pred Cce--ecchhHHHHHHHHH
Q 007143 138 GDT--VSNMLLTQALQEHK 154 (616)
Q Consensus 138 gD~--i~~~~l~~~l~~h~ 154 (616)
||+ +....+..+++.++
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 999 66668888887653
No 266
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=94.70 E-value=0.066 Score=58.53 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=55.1
Q ss_pred eEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEECCCCEECCCcEECCCCEECCCCEE
Q 007143 363 SVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLKPGVVLSFKVVIGERFVVPAHSKV 435 (616)
Q Consensus 363 s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~~g~vIg~~v~Ig~~~~v~~~~~v 435 (616)
+.....+.+.+.+.|.+|+|..++.+|++++|++|.|+.++.||++|+|. |+-+..... .++..||.+..+
T Consensus 268 ~~~~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIis-Gv~~~~~~~-~~~~~lpd~~~~ 338 (414)
T PF07959_consen 268 SPATTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIIS-GVDINSWSI-LPGLTLPDGVCL 338 (414)
T ss_pred cccccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEE-CCccccccc-ccCcccCCceEE
Confidence 33445677788899999999999999999999999999999999999998 665554432 233356666666
No 267
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=90.92 E-value=1.5 Score=38.78 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=64.0
Q ss_pred cceeCC-eehHHHHHHHHHHCC--CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i 129 (616)
++|..| .+++.++++.+...+ ..+++|+.....+...+++...... ...+..+......|.+.++..... ..
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~--~~ 76 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK---DPRVIRVINEENQGLAAARNAGLK--AA 76 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc---CCCeEEEEecCCCChHHHHHHHHH--Hh
Confidence 456655 699999999999997 7889888887666666666542111 123445555667788888775433 23
Q ss_pred cCC-EEEEeCceecchh-HHHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNML-LTQALQEHK 154 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~~-l~~~l~~h~ 154 (616)
..+ ++++.+|.+...+ +..++..+.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHh
Confidence 566 8888999977665 444434433
No 268
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=76.56 E-value=14 Score=33.26 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=61.8
Q ss_pred cceeCCe-ehHHHHHHHHHHC--CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143 53 LLPLVNV-PMINYTLAWLEAA--GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 53 Llpi~g~-PlI~y~Le~L~~~--Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i 129 (616)
++|.-|. ..|..+|+.|... ...+|+|+-....+...+.+.+..- .+..++++..+...|.+.++.... ...
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~---~~~~i~~i~~~~n~g~~~~~n~~~--~~a 77 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE---SDPNIRYIRNPENLGFSAARNRGI--KHA 77 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC---CSTTEEEEEHCCCSHHHHHHHHHH--HH-
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc---cccccccccccccccccccccccc--ccc
Confidence 4676664 7888999988886 4567777775443333333332100 124578887776668887777543 335
Q ss_pred cCC-EEEEeCceecch-hHHHHHHHHHHh
Q 007143 130 HGD-FVLISGDTVSNM-LLTQALQEHKER 156 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~h~~~ 156 (616)
.++ ++++-.|.+... -|..+++.+.+.
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKN 106 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHC
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhC
Confidence 667 788888986555 588888888874
No 269
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=76.41 E-value=3.1 Score=49.96 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=25.4
Q ss_pred CEEeceEECCCCEECCCCE-EeceEECCCCEECCCcEEece
Q 007143 358 SKISDSVIGEGCTIGSNVL-IEGSYIWDNVIIEDGCELRHV 397 (616)
Q Consensus 358 ~~I~~s~IG~~~~Ig~~~~-I~~s~I~~~v~Ig~~~~I~~s 397 (616)
++|.+++|..+|.++++.. |++|+|+.+++||.+|+|.++
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv 372 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGV 372 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecc
Confidence 4456666666666666633 566666666666666666554
No 270
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=72.85 E-value=8 Score=33.23 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=38.0
Q ss_pred EECCCCEECCCcEECCCCEECCCCEE-eceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEEC-CCcEECCCCEEC
Q 007143 335 EQSRSAQVGSFTVIGYGTKIGSNSKI-SDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVC-DGVIMKAGAVLK 412 (616)
Q Consensus 335 ~i~~~~~I~~~~~Ig~~~~Ig~~~~I-~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg-~~v~Ig~~~~I~ 412 (616)
.|++++.+.++........|. +. + ++........|+.++.|.+.+..+.+.|... +.+.+.. ..+.|...+.|.
T Consensus 4 ~I~~~~~i~G~i~~~~~v~i~-G~-v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~ 79 (101)
T PF04519_consen 4 IIGKGTKIEGDISSDGDVRID-GR-VEGNIKAEGKVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVE 79 (101)
T ss_pred EECCCCEEEEEEEECcEEEEE-EE-EEEEEEEceEEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEE
Confidence 444555554444444444442 11 3 2222323455555555555444444444322 3333333 344455555554
Q ss_pred CCCEECCCcEECCCC
Q 007143 413 PGVVLSFKVVIGERF 427 (616)
Q Consensus 413 ~g~vIg~~v~Ig~~~ 427 (616)
|-+-.....|..++
T Consensus 80 -G~i~~~~l~v~~ga 93 (101)
T PF04519_consen 80 -GDITAGKLEVEGGA 93 (101)
T ss_pred -EEEEECEEEEeCCC
Confidence 33333334444443
No 271
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=65.00 E-value=58 Score=30.76 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=58.3
Q ss_pred cceeCCee---hHHHHHHHHHHCC--CcEEEEEcC-CcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhc
Q 007143 53 LLPLVNVP---MINYTLAWLEAAG--VAEVFVFCC-AHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (616)
Q Consensus 53 Llpi~g~P---lI~y~Le~L~~~G--v~eI~vv~~-~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~ 126 (616)
++|+-|.. .|..+|+.+.... ..+++|+-. ...+...+.+... ... .++.++..+...|.+.++.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~--~~~--~~i~~i~~~~n~G~~~a~N~g~~- 77 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEF--KRK--LPLKVVPLEKNRGLGKALNEGLK- 77 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHH--Hhc--CCeEEEEcCccccHHHHHHHHHH-
Confidence 57887754 8999999998864 256666543 3234444333321 001 23566665556788888765433
Q ss_pred ccccCC-EEEEeCceecc-hhHHHHHHHHHH
Q 007143 127 NVIHGD-FVLISGDTVSN-MLLTQALQEHKE 155 (616)
Q Consensus 127 ~~i~~d-fLlv~gD~i~~-~~l~~~l~~h~~ 155 (616)
..+++ ++++.+|.+.. -.|..+++...+
T Consensus 78 -~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 78 -HCTYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred -hcCCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 34677 67777787544 457777776544
No 272
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=62.64 E-value=52 Score=29.38 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=58.9
Q ss_pred cceeCC-eehHHHHHHHHHHCC--CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i 129 (616)
++|.-| ...|..+|+.+.+.. -.+++|+-....+...+.+... .......+.++......|.+.++..... ..
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~n~~~~--~~ 77 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEEL--AALYIRRVLVVRDKENGGKAGALNAGLR--HA 77 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHH--hccccceEEEEEecccCCchHHHHHHHH--hc
Confidence 355555 478888899988874 4577777654444333333321 1100123455555667788888876543 34
Q ss_pred cCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
+++ ++++-+|.+... .|..++..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhcc
Confidence 677 788888985554 46666455444
No 273
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.78 E-value=87 Score=28.06 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=59.9
Q ss_pred cceeCC-eehHHHHHHHHHHCC--CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i 129 (616)
++|.-| ..+|..+|+.|...- ..+++|+.....+...+.+.+.. ..+.++..+...|.+.++..... ..
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~------~~~~~~~~~~~~g~~~a~n~~~~--~~ 73 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF------PEVRLIRNGENLGFGAGNNQGIR--EA 73 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC------CCeEEEecCCCcChHHHhhHHHh--hC
Confidence 355555 578899999998863 45777777655555555554421 13556666666788888875443 34
Q ss_pred cCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
+.+ ++++-.|.+... .+..+++.+..
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~ 101 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQ 101 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHh
Confidence 667 666777775544 56676665444
No 274
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=60.78 E-value=94 Score=30.60 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCCCCCCc--ccceeCC-eehHHHHHHHHHHCCC----cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCH
Q 007143 44 PITLERPK--VLLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISA 116 (616)
Q Consensus 44 PlT~~~PK--~Llpi~g-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~ 116 (616)
+.....|+ .++|.-| ...|..+|+.+..... -|++|+.....+...+.+.+. .. ..+.++..+...|.
T Consensus 23 ~~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~--~~---~~v~~i~~~~~~g~ 97 (251)
T cd06439 23 PDPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREY--AD---KGVKLLRFPERRGK 97 (251)
T ss_pred CCCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHH--hh---CcEEEEEcCCCCCh
Confidence 33444555 5677777 4567788888776532 267777765544444444331 10 03556665666788
Q ss_pred HHHHHHHHhcccccCC-EEEEeCceecchh-HHHHHHHH
Q 007143 117 GDALRLIYEQNVIHGD-FVLISGDTVSNML-LTQALQEH 153 (616)
Q Consensus 117 gdalr~~~~~~~i~~d-fLlv~gD~i~~~~-l~~~l~~h 153 (616)
+.++..... ...+| ++++-+|.+...+ |..+++..
T Consensus 98 ~~a~n~gi~--~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 134 (251)
T cd06439 98 AAALNRALA--LATGEIVVFTDANALLDPDALRLLVRHF 134 (251)
T ss_pred HHHHHHHHH--HcCCCEEEEEccccCcCHHHHHHHHHHh
Confidence 888775443 34567 8888999966554 67777665
No 275
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=59.28 E-value=47 Score=30.89 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=49.8
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCCEEeceEECCC-CEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCE
Q 007143 332 LEIEQSRSAQVGSFTVIGYGTKIGSNSKISDSVIGEG-CTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAV 410 (616)
Q Consensus 332 ~~v~i~~~~~I~~~~~Ig~~~~Ig~~~~I~~s~IG~~-~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~ 410 (616)
..+.|+.++.+.+........+|. + .+...++.++ +.|++..+|.+.+..+...|. ++...+....+.+.|..++.
T Consensus 22 ~~tli~~g~~f~G~l~f~~~l~Id-G-~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~ 98 (146)
T COG1664 22 PETLIGAGTTFKGELVFEGPLRID-G-TFEGDVHSDGGIVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGR 98 (146)
T ss_pred CCeEEecCCEEEEEEEecceEEEe-E-EEEEEEEeCCCEEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcE
Confidence 344555555554444444444442 2 4444444444 777777777666555555553 33333455556666666665
Q ss_pred ECCCCEECCCcEECCCCEECC
Q 007143 411 LKPGVVLSFKVVIGERFVVPA 431 (616)
Q Consensus 411 I~~g~vIg~~v~Ig~~~~v~~ 431 (616)
+. |-+=+....|..|+++.-
T Consensus 99 v~-GdI~~~~i~v~~Ga~f~G 118 (146)
T COG1664 99 VI-GDITTKEITVEEGAIFEG 118 (146)
T ss_pred Ee-eeecccEEEEccCCEEEe
Confidence 54 344444555555554443
No 276
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=58.10 E-value=76 Score=32.63 Aligned_cols=101 Identities=15% Similarity=0.065 Sum_probs=61.4
Q ss_pred cceeCCe--ehHHHHHHHHHHCC----CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhc
Q 007143 53 LLPLVNV--PMINYTLAWLEAAG----VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (616)
Q Consensus 53 Llpi~g~--PlI~y~Le~L~~~G----v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~ 126 (616)
++|.-|. ..|..+|+.+...- ..||+||-....+.....+...... .....++++..+...|.+.|.-....
T Consensus 3 IIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~-~~~~~v~vi~~~~n~G~~~a~N~g~~- 80 (299)
T cd02510 3 IIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYK-KYLPKVKVLRLKKREGLIRARIAGAR- 80 (299)
T ss_pred EEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHh-hcCCcEEEEEcCCCCCHHHHHHHHHH-
Confidence 4566664 48888999888653 1388888765544333333220000 00124677776667788877665433
Q ss_pred ccccCC-EEEEeCceecch-hHHHHHHHHHHh
Q 007143 127 NVIHGD-FVLISGDTVSNM-LLTQALQEHKER 156 (616)
Q Consensus 127 ~~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~~ 156 (616)
..+++ ++++.+|++... -|..+++...+.
T Consensus 81 -~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~ 111 (299)
T cd02510 81 -AATGDVLVFLDSHCEVNVGWLEPLLARIAEN 111 (299)
T ss_pred -HccCCEEEEEeCCcccCccHHHHHHHHHHhC
Confidence 24577 788899995544 578888877653
No 277
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=57.69 E-value=61 Score=31.16 Aligned_cols=98 Identities=14% Similarity=0.088 Sum_probs=55.9
Q ss_pred cceeCC-eehHHHHHHHHHHC------CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHh
Q 007143 53 LLPLVN-VPMINYTLAWLEAA------GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~------Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~ 125 (616)
++|.-| ...|..+|+.+... ..-||+|+-....+...+.++.. ....+..++++......|.+.|+.....
T Consensus 2 iip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~--~~~~~~~i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 2 VIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKL--ARKNPALIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred EEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHH--HHhCCCcEEEEEcccCCCcHHHHHHHHH
Confidence 355555 45566667776653 23577777654433333333220 0000112566766667788888886543
Q ss_pred cccccCC-EEEEeCceecch-hHHHHHHHHH
Q 007143 126 QNVIHGD-FVLISGDTVSNM-LLTQALQEHK 154 (616)
Q Consensus 126 ~~~i~~d-fLlv~gD~i~~~-~l~~~l~~h~ 154 (616)
...++ ++++.+|..... .+..+++...
T Consensus 80 --~a~gd~i~~ld~D~~~~~~~l~~l~~~~~ 108 (211)
T cd04188 80 --AARGDYILFADADLATPFEELEKLEEALK 108 (211)
T ss_pred --HhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34567 788888986555 5777777633
No 278
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=53.41 E-value=1.3e+02 Score=28.04 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=57.9
Q ss_pred cceeCC-eehHHHHHHHHHHCCC----cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
++|.-| ...|.-+|+.+.+... .+|+|+.....+...+.+... +..+.........|.+.|+.......
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~------~~~~~~~~~~~~~gk~~aln~g~~~a 75 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA------GATVLERHDPERRGKGYALDFGFRHL 75 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc------CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 466666 5778888898887543 467777655555555554431 12333333344567888887653321
Q ss_pred ---cccCC-EEEEeCceecch-hHHHHHHHHH
Q 007143 128 ---VIHGD-FVLISGDTVSNM-LLTQALQEHK 154 (616)
Q Consensus 128 ---~i~~d-fLlv~gD~i~~~-~l~~~l~~h~ 154 (616)
.-+.+ ++++-+|.+... -|..++..+.
T Consensus 76 ~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~ 107 (183)
T cd06438 76 LNLADDPDAVVVFDADNLVDPNALEELNARFA 107 (183)
T ss_pred HhcCCCCCEEEEEcCCCCCChhHHHHHHHHHh
Confidence 11356 788899997665 4567766654
No 279
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=51.95 E-value=16 Score=40.10 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=48.6
Q ss_pred ccCCCeEEEEEeCCCCCCCCCCCCCCCcccceeC---CeehHHHHHHHHHHC----------CCc-EEEEEcCCc-HHHH
Q 007143 24 LARQPLQAILLADSFTTKFRPITLERPKVLLPLV---NVPMINYTLAWLEAA----------GVA-EVFVFCCAH-SKQV 88 (616)
Q Consensus 24 ~~~~~l~aVILA~g~~~R~~PlT~~~PK~Llpi~---g~PlI~y~Le~L~~~----------Gv~-eI~vv~~~~-~~~i 88 (616)
..+....+|++|+|.|||++- ..||.+.|++ |+.++++..+.+... |++ ..||+++.. .+..
T Consensus 93 i~~~~~a~~llaGgqgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T 169 (477)
T KOG2388|consen 93 IAEGKVAVVLLAGGQGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEAT 169 (477)
T ss_pred hhcCcceEEEeccCceeeecc---CCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHh
Confidence 446678899999999999986 6799999998 466888777665432 222 356677655 4556
Q ss_pred HHHHHh
Q 007143 89 IDYLEN 94 (616)
Q Consensus 89 ~~~l~~ 94 (616)
.+|++.
T Consensus 170 ~~~f~~ 175 (477)
T KOG2388|consen 170 LEYFES 175 (477)
T ss_pred HhHHhh
Confidence 677765
No 280
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=50.43 E-value=1.4e+02 Score=29.41 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=58.7
Q ss_pred cceeCC-eehHHHHHHHHHHCCC----cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
++|.-| .-.|..+|+.+..... -||+|+.....+...+.++.. ......++..+......|.+.|+.....
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~--~~~~~~~i~~~~~~~~~G~~~a~n~g~~-- 81 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL--RLPSIFRVVVVPPSQPRTKPKACNYALA-- 81 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh--ccCCCeeEEEecCCCCCchHHHHHHHHH--
Confidence 455555 3567788888877533 257666554444444444331 1111234555554455678888886543
Q ss_pred cccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
..+++ ++++-+|.+... .|..+++.+.+
T Consensus 82 ~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 82 FARGEYVVIYDAEDAPDPDQLKKAVAAFAR 111 (241)
T ss_pred hcCCCEEEEEcCCCCCChHHHHHHHHHHHh
Confidence 35677 778888886655 56788777654
No 281
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=46.07 E-value=1.6e+02 Score=28.47 Aligned_cols=95 Identities=17% Similarity=0.117 Sum_probs=59.2
Q ss_pred cceeCC-e-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccccc
Q 007143 53 LLPLVN-V-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH 130 (616)
Q Consensus 53 Llpi~g-~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~ 130 (616)
++|.-| . +.|..+|+.+.+..-.+|+|+.....+...+.+..... ...+.++. ....|.+.++.... ...+
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~----~~~~~v~~-~~~~g~~~a~n~g~--~~a~ 77 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK----YGGIFVIT-VPHPGKRRALAEGI--RHVT 77 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc----CCcEEEEe-cCCCChHHHHHHHH--HHhC
Confidence 456655 4 78999999998876668888877666665555432211 12234443 33456677765432 2246
Q ss_pred CC-EEEEeCceecchh-HHHHHHHHH
Q 007143 131 GD-FVLISGDTVSNML-LTQALQEHK 154 (616)
Q Consensus 131 ~d-fLlv~gD~i~~~~-l~~~l~~h~ 154 (616)
+| ++++-+|.+...+ |..+++.+.
T Consensus 78 ~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 78 TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCEEEEECCCceeChhHHHHHHHhcc
Confidence 77 7888899966654 677776554
No 282
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=44.88 E-value=1.3e+02 Score=27.96 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=55.6
Q ss_pred ceeCC-eehHHHHHHHHHHCCCc--EEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccccc
Q 007143 54 LPLVN-VPMINYTLAWLEAAGVA--EVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIH 130 (616)
Q Consensus 54 lpi~g-~PlI~y~Le~L~~~Gv~--eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~ 130 (616)
+|.-| ...|..+|+.+.+.... +|+|+-....+...+.+.+... .+..+...+..|.+.++..... ..+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~------~~~~~~~~~~~g~~~a~n~~~~--~a~ 75 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED------KITYWISEPDKGIYDAMNKGIA--LAT 75 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh------hcEEEEecCCcCHHHHHHHHHH--HcC
Confidence 44444 45788889999876554 6777755444545555543110 1223333455688888775443 346
Q ss_pred CC-EEEEeCce-ecchhHHHHHHHHHH
Q 007143 131 GD-FVLISGDT-VSNMLLTQALQEHKE 155 (616)
Q Consensus 131 ~d-fLlv~gD~-i~~~~l~~~l~~h~~ 155 (616)
++ ++++.+|. +....+..++..+..
T Consensus 76 ~~~v~~ld~D~~~~~~~~~~~~~~~~~ 102 (202)
T cd06433 76 GDIIGFLNSDDTLLPGALLAVVAAFAE 102 (202)
T ss_pred CCEEEEeCCCcccCchHHHHHHHHHHh
Confidence 67 67777777 445567777755444
No 283
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=41.05 E-value=1.6e+02 Score=28.94 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=53.9
Q ss_pred cceeCC-eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccccC
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHG 131 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~ 131 (616)
++|.-| ...|..+|+.+... ..+|+|+-....+...+.++.. + +.++.. ...|.|.+..... ....+
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~~------~--~~v~~~-~~~g~~~~~n~~~--~~a~~ 72 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKEY------G--AKVYQR-WWDGFGAQRNFAL--ELATN 72 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHHc------C--CEEEEC-CCCChHHHHHHHH--HhCCC
Confidence 455555 56678888888654 3689888876656555555431 2 333433 5567777766433 33567
Q ss_pred C-EEEEeCceecchhH-HHHHHH
Q 007143 132 D-FVLISGDTVSNMLL-TQALQE 152 (616)
Q Consensus 132 d-fLlv~gD~i~~~~l-~~~l~~ 152 (616)
+ ++++-+|.+...++ ..+++.
T Consensus 73 d~vl~lDaD~~~~~~~~~~l~~~ 95 (229)
T cd02511 73 DWVLSLDADERLTPELADEILAL 95 (229)
T ss_pred CEEEEEeCCcCcCHHHHHHHHHH
Confidence 7 78888898766654 444443
No 284
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=40.84 E-value=1.7e+02 Score=28.35 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=56.2
Q ss_pred cceeCC-eehHHHHHHHHHHCCC----cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
++|.-| .+.|..+|+.|.+... -+|+|+-....+...+.++.... . ...+.++... ..|.+.++.....
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~--~-~~~v~~i~~~-~~~~~~a~N~g~~-- 78 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA--K-DPRIRLIDNP-KRIQSAGLNIGIR-- 78 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh--c-CCeEEEEeCC-CCCchHHHHHHHH--
Confidence 345544 5677888888887654 37877766555544444443110 0 1235666543 3466666654432
Q ss_pred cccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
..+.| ++++.+|.+... -|..+++.++.
T Consensus 79 ~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~ 108 (249)
T cd02525 79 NSRGDIIIRVDAHAVYPKDYILELVEALKR 108 (249)
T ss_pred HhCCCEEEEECCCccCCHHHHHHHHHHHhc
Confidence 24677 777788886555 46777765443
No 285
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=39.65 E-value=50 Score=28.20 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCEECCCCEEeceEECCCCEECCCCEEeceEEC-CCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143 351 GTKIGSNSKISDSVIGEGCTIGSNVLIEGSYIW-DNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 351 ~~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~-~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (616)
...|+.++.|...+-.+.+.|... +.+.+.. ..+.|...+.+.+.+-.....|..++.+.
T Consensus 36 ~v~i~~~~~v~G~i~~~~~~i~G~--v~G~v~a~~~v~i~~~~~v~G~i~~~~l~v~~ga~i~ 96 (101)
T PF04519_consen 36 KVKIGGNGEVKGDIKADDVIISGS--VDGNVEASGKVEIYGTARVEGDITAGKLEVEGGASIN 96 (101)
T ss_pred EEEEcCCCEEEEEEEEeEEEEcCE--EeEEEEECceEEEeCCEEEEEEEEECEEEEeCCCEEE
Confidence 444444555543344444444322 3322222 44556666666555555555555555543
No 286
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=38.70 E-value=1.8e+02 Score=26.79 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=55.0
Q ss_pred ceeCC-eehHHHHHHHHHHC----CCcEEEEEcCCcHHHHHHHHHhc--CCCCCCCcEEEEEeCCCccCHHHHHHHHHhc
Q 007143 54 LPLVN-VPMINYTLAWLEAA----GVAEVFVFCCAHSKQVIDYLENS--EWFSQPNFTVKTIESHNIISAGDALRLIYEQ 126 (616)
Q Consensus 54 lpi~g-~PlI~y~Le~L~~~----Gv~eI~vv~~~~~~~i~~~l~~~--~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~ 126 (616)
+|.-| ...|..+|+.+.+. ...||+|+-....+...+.+... ++ ..++++..+...|.+.++....
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~-----~~~~~~~~~~n~G~~~a~n~g~-- 75 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV-----PRVRVIRLSRNFGKGAAVRAGF-- 75 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC-----CCeEEEEccCCCCccHHHHHHH--
Confidence 45545 35567788888776 36788777654433333333221 11 1245566666677777776543
Q ss_pred ccccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 127 NVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 127 ~~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
....++ ++++.+|..... -|..++.....
T Consensus 76 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 76 KAARGDIVVTMDADLQHPPEDIPKLLEKLLE 106 (185)
T ss_pred HHhcCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 234557 788888875554 47777775343
No 287
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=37.43 E-value=3.1e+02 Score=26.51 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=54.7
Q ss_pred cceeCCee--hHHHHHHHHHHCCC--cEEEEEcCCcHH-----HHHHHHHhcCCCCCCCcEEEEEeCCCccCH-HHHHHH
Q 007143 53 LLPLVNVP--MINYTLAWLEAAGV--AEVFVFCCAHSK-----QVIDYLENSEWFSQPNFTVKTIESHNIISA-GDALRL 122 (616)
Q Consensus 53 Llpi~g~P--lI~y~Le~L~~~Gv--~eI~vv~~~~~~-----~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~-gdalr~ 122 (616)
++|.-|.+ +|..+|+.|..... -+|+|+-....+ .++++.... +..+.++......|. +.|+..
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~------~~~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL------GERFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh------CCcEEEEEcCCCCCCchHHHHH
Confidence 56777753 79999999998753 367666654322 234444331 124555554433453 566665
Q ss_pred HHhcccccCC-EEEEeCceecch-hHHHHHHHH
Q 007143 123 IYEQNVIHGD-FVLISGDTVSNM-LLTQALQEH 153 (616)
Q Consensus 123 ~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~h 153 (616)
......-+.| ++++..|.+... -|..++...
T Consensus 77 g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~ 109 (236)
T cd06435 77 ALERTAPDAEIIAVIDADYQVEPDWLKRLVPIF 109 (236)
T ss_pred HHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHh
Confidence 4332111246 788888985544 567777654
No 288
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=34.20 E-value=3.2e+02 Score=26.89 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=53.9
Q ss_pred cceeCC-eehHHHHHHHHHHC----CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 53 LLPLVN-VPMINYTLAWLEAA----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~----Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
++|.-| ...|..+++.+.+. .--||+|+-....+...+.+.+..-. .+...+.++......|.|.|+.....
T Consensus 14 vIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~-~~~~~v~~~~~~~n~G~~~a~n~g~~-- 90 (243)
T PLN02726 14 IVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKV-YGEDRILLRPRPGKLGLGTAYIHGLK-- 90 (243)
T ss_pred EEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHh-cCCCcEEEEecCCCCCHHHHHHHHHH--
Confidence 334333 34455555555432 12377777654444333333321000 01124556655566788888875433
Q ss_pred cccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
..+++ ++++.+|...+. .|..+++....
T Consensus 91 ~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 91 HASGDFVVIMDADLSHHPKYLPSFIKKQRE 120 (243)
T ss_pred HcCCCEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 34677 778899986655 56777765543
No 289
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=33.42 E-value=3.2e+02 Score=25.51 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred cceeCC-e-ehHHHHHHHHHHCCCc--EEEEEcCCcHH-HHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 53 LLPLVN-V-PMINYTLAWLEAAGVA--EVFVFCCAHSK-QVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 53 Llpi~g-~-PlI~y~Le~L~~~Gv~--eI~vv~~~~~~-~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
++|.-| . ..|..+|+.|.+.-.. +|+|+-....+ .++..+...... .-.+.++..+...|.+.++-....
T Consensus 6 ii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~a~n~g~~-- 80 (202)
T cd04184 6 VMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQ---DPRIKVVFREENGGISAATNSALE-- 80 (202)
T ss_pred EEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhc---CCCEEEEEcccCCCHHHHHHHHHH--
Confidence 455544 4 6788888888875433 67776544322 233333220000 113555555566788877664432
Q ss_pred cccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
..+++ ++++..|.+... .|..+++.+.+
T Consensus 81 ~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 81 LATGEFVALLDHDDELAPHALYEVVKALNE 110 (202)
T ss_pred hhcCCEEEEECCCCcCChHHHHHHHHHHHh
Confidence 34567 667777776555 57788877633
No 290
>PRK10018 putative glycosyl transferase; Provisional
Probab=33.10 E-value=4e+02 Score=27.40 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=59.2
Q ss_pred cceeCC-eehHHHHHHHHHHCCCc--EEEEEcCCc--HHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGVA--EVFVFCCAH--SKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv~--eI~vv~~~~--~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
++|.-| ...|..+|+.+...-.. |++|+-... .+.+++++.... ...|.++..+...|.+.|+.... .
T Consensus 10 Iip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~-----~~ri~~i~~~~n~G~~~a~N~gi--~ 82 (279)
T PRK10018 10 YMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALN-----DPRITYIHNDINSGACAVRNQAI--M 82 (279)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcC-----CCCEEEEECCCCCCHHHHHHHHH--H
Confidence 445545 55678888888776443 676665433 245666665421 12477777766778888876543 2
Q ss_pred cccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 128 VIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
..+++ ++++-+|-+... .|..+++...+
T Consensus 83 ~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 83 LAQGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HcCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 35677 677777775544 57777765443
No 291
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=32.77 E-value=3.5e+02 Score=25.38 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=56.5
Q ss_pred ceeCC-eehHHHHHHHHHHCCC--cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc-cc
Q 007143 54 LPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN-VI 129 (616)
Q Consensus 54 lpi~g-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~-~i 129 (616)
+|.-| ...|..+|+.|.+.-. .+|+|+-....+...+.+++... ..++.++..++..|.+.++....... ..
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~----~~~i~~~~~~~n~g~~~~~n~~~~~a~~~ 78 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGD----LDNIVYLRLPENLGGAGGFYEGVRRAYEL 78 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcC----CCceEEEECccccchhhHHHHHHHHHhcc
Confidence 44434 5678888999887632 47777766555666666655221 12356666566666666554332221 23
Q ss_pred cCC-EEEEeCceecchh-HHHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNML-LTQALQEHK 154 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~~-l~~~l~~h~ 154 (616)
+.| ++++..|.+...+ +..+++...
T Consensus 79 ~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 456 7778888866654 555555444
No 292
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.23 E-value=1.7e+02 Score=31.67 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=50.3
Q ss_pred HHHHHHHCC-CcEEEEEcCCcH--HHHHHHHHhcCCCCCCCcEEEEE--eCCCccCHHHHHHHHHhc-ccccCCEEEEeC
Q 007143 65 TLAWLEAAG-VAEVFVFCCAHS--KQVIDYLENSEWFSQPNFTVKTI--ESHNIISAGDALRLIYEQ-NVIHGDFVLISG 138 (616)
Q Consensus 65 ~Le~L~~~G-v~eI~vv~~~~~--~~i~~~l~~~~~~~~~~~~i~~i--~~~~~~~~gdalr~~~~~-~~i~~dfLlv~g 138 (616)
++..+.+.+ ++.++++++.|. +....+++...-.. +.....+. .+.-+..+|.+|..+..- .-.+.|.+|++|
T Consensus 22 li~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~-pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhG 100 (383)
T COG0381 22 LVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRK-PDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPDLVLVHG 100 (383)
T ss_pred HHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCC-CCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 345666665 999999999886 77777776632111 22222222 112222355555544321 224578999999
Q ss_pred ceecchhHHHHHHHHHHh
Q 007143 139 DTVSNMLLTQALQEHKER 156 (616)
Q Consensus 139 D~i~~~~l~~~l~~h~~~ 156 (616)
|+.+ .|...+..++.+
T Consensus 101 DT~t--~lA~alaa~~~~ 116 (383)
T COG0381 101 DTNT--TLAGALAAFYLK 116 (383)
T ss_pred Ccch--HHHHHHHHHHhC
Confidence 9855 455445555543
No 293
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=31.49 E-value=1.6e+02 Score=27.37 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=28.8
Q ss_pred CEECCCCEEeceEECCCCEECCCCEEeceEECCCCEECCCcEEeceEECCCcEECCCCEEC
Q 007143 352 TKIGSNSKISDSVIGEGCTIGSNVLIEGSYIWDNVIIEDGCELRHVIVCDGVIMKAGAVLK 412 (616)
Q Consensus 352 ~~Ig~~~~I~~s~IG~~~~Ig~~~~I~~s~I~~~v~Ig~~~~I~~siIg~~v~Ig~~~~I~ 412 (616)
+.|++...|...+.-+...| .+++..+.+..+.+.|...+.+.+-+-+....|..|+.+.
T Consensus 58 iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f~ 117 (146)
T COG1664 58 IVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRVIGDITTKEITVEEGAIFE 117 (146)
T ss_pred EEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEEeeeecccEEEEccCCEEE
Confidence 44555554443333333333 2233333444555566666655555555555555555544
No 294
>PRK11204 N-glycosyltransferase; Provisional
Probab=30.90 E-value=2.2e+02 Score=30.77 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=58.9
Q ss_pred cceeCC-eehHHHHHHHHHHCCC--cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i 129 (616)
++|.-| ...|..+++.+.+... -||+|+-....+...+.+++.. .. ..+++++...+..|.+.++..... ..
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~--~~-~~~v~~i~~~~n~Gka~aln~g~~--~a 133 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA--AQ-IPRLRVIHLAENQGKANALNTGAA--AA 133 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH--Hh-CCcEEEEEcCCCCCHHHHHHHHHH--Hc
Confidence 455555 4678888888887643 3677776544333333332200 00 123667765556788888876543 34
Q ss_pred cCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
++| ++++-+|.+... -|..+++.+.+
T Consensus 134 ~~d~i~~lDaD~~~~~d~L~~l~~~~~~ 161 (420)
T PRK11204 134 RSEYLVCIDGDALLDPDAAAYMVEHFLH 161 (420)
T ss_pred CCCEEEEECCCCCCChhHHHHHHHHHHh
Confidence 677 788899986655 46777776654
No 295
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=30.73 E-value=3e+02 Score=26.15 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=54.2
Q ss_pred cceeCC-eehHHHHHHHHHHCCC----cEEEEEcCCcHHHHHHHHH-hcCCCCCCCcEEEEEeCCC--ccCHHHHHHHHH
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV----AEVFVFCCAHSKQVIDYLE-NSEWFSQPNFTVKTIESHN--IISAGDALRLIY 124 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv----~eI~vv~~~~~~~i~~~l~-~~~~~~~~~~~i~~i~~~~--~~~~gdalr~~~ 124 (616)
++|.-| ...|..+|+.|..... -+|+|+-....+...+.+. .... .+..+.++.... ..|...++....
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~v~~~~~~~~~~~g~~~a~n~g~ 78 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAK---PNFQLKILNNSRVSISGKKNALTTAI 78 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhC---CCcceEEeeccCcccchhHHHHHHHH
Confidence 456666 5668888988877532 4677776544333333332 1111 123455555442 345555554332
Q ss_pred hcccccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 125 EQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 125 ~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
...+++ ++++-+|.+... -|..+++.+..
T Consensus 79 --~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~ 109 (229)
T cd04192 79 --KAAKGDWIVTTDADCVVPSNWLLTFVAFIQK 109 (229)
T ss_pred --HHhcCCEEEEECCCcccCHHHHHHHHHHhhc
Confidence 234567 778888886655 46677765543
No 296
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=30.11 E-value=5.5e+02 Score=25.85 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=64.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCcccce-eCCe---ehHHHHHHHHHHCCCcEEEEEcCCc---HHHHHHHHHhcCCCC
Q 007143 27 QPLQAILLADSFTTKFRPITLERPKVLLP-LVNV---PMINYTLAWLEAAGVAEVFVFCCAH---SKQVIDYLENSEWFS 99 (616)
Q Consensus 27 ~~l~aVILA~g~~~R~~PlT~~~PK~Llp-i~g~---PlI~y~Le~L~~~Gv~eI~vv~~~~---~~~i~~~l~~~~~~~ 99 (616)
..+.+|+.+...|+-+.. ....-..+.. -.|. .-..=+++.|...|+++|.|++.|. .+++.+|+++.
T Consensus 70 a~~dvi~~~cTsgs~~~G-~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~---- 144 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIG-DDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVR---- 144 (239)
T ss_pred CCCCEEEEccchhheecC-HHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhC----
Confidence 356788888766654321 0111111111 1133 3456678888889999999999986 45777888763
Q ss_pred CCCcEEEEEeC-----------CCccCHHHHHHHHHhcccccCCEEEEeCceecchhHHHHHHHHH
Q 007143 100 QPNFTVKTIES-----------HNIISAGDALRLIYEQNVIHGDFVLISGDTVSNMLLTQALQEHK 154 (616)
Q Consensus 100 ~~~~~i~~i~~-----------~~~~~~gdalr~~~~~~~i~~dfLlv~gD~i~~~~l~~~l~~h~ 154 (616)
|+.|.-+.. -....+-++++.+ ..-.-|-++++|=.+.-.++-+-+++..
T Consensus 145 --G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~---~~~~aDAifisCTnLrt~~vi~~lE~~l 205 (239)
T TIGR02990 145 --GFEIVNFTCLGLTDDREMARISPDCIVEAALAA---FDPDADALFLSCTALRAATCAQRIEQAI 205 (239)
T ss_pred --CcEEeeeeccCCCCCceeeecCHHHHHHHHHHh---cCCCCCEEEEeCCCchhHHHHHHHHHHH
Confidence 444443321 1111222223322 1123467888887666666665555443
No 297
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=29.88 E-value=2.2e+02 Score=27.25 Aligned_cols=97 Identities=18% Similarity=0.170 Sum_probs=55.9
Q ss_pred cceeCC-eehHHHHHHHHHHCC---CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAG---VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~G---v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~ 128 (616)
++|.-| ...|..+|+.+...- --+|+||-....+...+.+.. |... .-.+.++......|.+.|+..... .
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~--~~~~-~~~i~~~~~~~n~G~~~a~n~g~~--~ 76 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRE--LAKE-YPRVRLIVRPGKRGLGSAYIEGFK--A 76 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHH--HHHh-CCceEEEecCCCCChHHHHHHHHH--H
Confidence 456555 356788888887643 357777765443333333222 0000 013556666667788888775432 3
Q ss_pred ccCC-EEEEeCceecch-hHHHHHHHHH
Q 007143 129 IHGD-FVLISGDTVSNM-LLTQALQEHK 154 (616)
Q Consensus 129 i~~d-fLlv~gD~i~~~-~l~~~l~~h~ 154 (616)
..++ ++++.+|..... .|..+++...
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 104 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQL 104 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567 678889986555 4667776543
No 298
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=29.31 E-value=4.1e+02 Score=24.24 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=51.3
Q ss_pred ceeCC-eehHHHHHHHHHHC--CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeC-CCccCHHHHHHHHHhcccc
Q 007143 54 LPLVN-VPMINYTLAWLEAA--GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIES-HNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 54 lpi~g-~PlI~y~Le~L~~~--Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~-~~~~~~gdalr~~~~~~~i 129 (616)
+|.-| ...|..+|+.+... .--+|+|+-....+..++.+++.. ...+.++..+.. ....+.+.++... ....
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~n~g--~~~a 78 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK--SQFPIPIKHVWQEDEGFRKAKIRNKA--IAAA 78 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH--hhcCCceEEEEcCCcchhHHHHHHHH--HHHh
Confidence 45544 45688899999875 234777776655554444443310 001123333332 2223445554432 2334
Q ss_pred cCC-EEEEeCceecchh-HHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNML-LTQALQEH 153 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~~-l~~~l~~h 153 (616)
+++ ++++.+|.+...+ |..+++.+
T Consensus 79 ~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 79 KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 567 7888888866654 56665544
No 299
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=28.51 E-value=2.9e+02 Score=29.08 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=48.1
Q ss_pred HHHHHHHHHHCCC-cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccccCC-EEEEeCc
Q 007143 62 INYTLAWLEAAGV-AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVIHGD-FVLISGD 139 (616)
Q Consensus 62 I~y~Le~L~~~Gv-~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i~~d-fLlv~gD 139 (616)
++.+.+.+.+... -||+|+-....+.-.+.+.+. ....+..+..+......|.+.|++.... ..++| ++++-+|
T Consensus 25 l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~--~~~~~~~v~~i~~~~n~G~~~A~~~G~~--~A~gd~vv~~DaD 100 (325)
T PRK10714 25 IRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEA--AQAPDSHIVAILLNRNYGQHSAIMAGFS--HVTGDLIITLDAD 100 (325)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHH--HhhcCCcEEEEEeCCCCCHHHHHHHHHH--hCCCCEEEEECCC
Confidence 3333333333332 377776654433333332221 0001233544444455688889886432 34677 7888999
Q ss_pred eecch-hHHHHHHHHH
Q 007143 140 TVSNM-LLTQALQEHK 154 (616)
Q Consensus 140 ~i~~~-~l~~~l~~h~ 154 (616)
...+. .+..+++...
T Consensus 101 ~q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 101 LQNPPEEIPRLVAKAD 116 (325)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 96655 7888888764
No 300
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.32 E-value=3.6e+02 Score=25.28 Aligned_cols=92 Identities=14% Similarity=0.213 Sum_probs=54.3
Q ss_pred cceeCC-eehHHHHHHHHHHCCC--cEEEEEcCCcH----HHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHh
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHS----KQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYE 125 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~----~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~ 125 (616)
++|.-| ...|..+|+.+..... -||+|+-.... +.++++..+. +..+.++......|.+.++....
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~------~~~~~~~~~~~~~G~~~~~n~g~- 75 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKD------PFIIILIRNGKNLGVARNFESLL- 75 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcC------CceEEEEeCCCCccHHHHHHHHH-
Confidence 456555 3478888888887633 36766654332 3344443321 12355566666678888877542
Q ss_pred cccccCC-EEEEeCceecch-hHHHHHHH
Q 007143 126 QNVIHGD-FVLISGDTVSNM-LLTQALQE 152 (616)
Q Consensus 126 ~~~i~~d-fLlv~gD~i~~~-~l~~~l~~ 152 (616)
...+++ ++++..|.+... .|..+++.
T Consensus 76 -~~~~g~~v~~ld~Dd~~~~~~l~~~~~~ 103 (214)
T cd04196 76 -QAADGDYVFFCDQDDIWLPDKLERLLKA 103 (214)
T ss_pred -HhCCCCEEEEECCCcccChhHHHHHHHH
Confidence 334677 667777775544 47777765
No 301
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=28.24 E-value=3.9e+02 Score=28.21 Aligned_cols=98 Identities=12% Similarity=0.150 Sum_probs=57.4
Q ss_pred cceeCC-eehHHHHHHHHHHC----------CCcEEEEEcCCcHH----HHHHHHHhcCCCCCCCcEEEEEeCCCccCHH
Q 007143 53 LLPLVN-VPMINYTLAWLEAA----------GVAEVFVFCCAHSK----QVIDYLENSEWFSQPNFTVKTIESHNIISAG 117 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~----------Gv~eI~vv~~~~~~----~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~g 117 (616)
.+|.-| .+-|..+|+.+.+. +--||+||-....+ .++++..+.. .++..+.++..+.-.|.|
T Consensus 75 VIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~---~~~~~i~vi~~~~N~G~~ 151 (333)
T PTZ00260 75 VIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI---NPNIDIRLLSLLRNKGKG 151 (333)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC---CCCCcEEEEEcCCCCChH
Confidence 455545 56677777766541 23578777754333 2333333210 012347777666677999
Q ss_pred HHHHHHHhcccccCC-EEEEeCceecch-hHHHHHHHHHH
Q 007143 118 DALRLIYEQNVIHGD-FVLISGDTVSNM-LLTQALQEHKE 155 (616)
Q Consensus 118 dalr~~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~h~~ 155 (616)
.|++..... .+++ ++++-+|...+. ++..+++....
T Consensus 152 ~A~~~Gi~~--a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 152 GAVRIGMLA--SRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred HHHHHHHHH--ccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 998865432 3567 778889986555 66777766544
No 302
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=27.59 E-value=2.1e+02 Score=26.35 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=50.7
Q ss_pred ceeCCe-ehHHHHHHHHHHC-----CCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcc
Q 007143 54 LPLVNV-PMINYTLAWLEAA-----GVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQN 127 (616)
Q Consensus 54 lpi~g~-PlI~y~Le~L~~~-----Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~ 127 (616)
+|.-|. -.|..+|+.|... .--+|+|+-....+...+.++.. ... ..++.++......|.+.|+.....
T Consensus 3 Ip~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~--~~~-~~~i~~i~~~~n~G~~~a~n~g~~-- 77 (181)
T cd04187 3 VPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILREL--AAR-DPRVKVIRLSRNFGQQAALLAGLD-- 77 (181)
T ss_pred EeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHH--Hhh-CCCEEEEEecCCCCcHHHHHHHHH--
Confidence 444442 3445555555432 22477777665443333333221 000 113566655556788888875432
Q ss_pred cccCC-EEEEeCceecch-hHHHHHHH
Q 007143 128 VIHGD-FVLISGDTVSNM-LLTQALQE 152 (616)
Q Consensus 128 ~i~~d-fLlv~gD~i~~~-~l~~~l~~ 152 (616)
...++ ++++-+|..... .+..+++.
T Consensus 78 ~a~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 78 HARGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred hcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 34567 788888986655 46777765
No 303
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=26.00 E-value=5.6e+02 Score=24.58 Aligned_cols=87 Identities=17% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCe-ehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc-cCC-E
Q 007143 57 VNV-PMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI-HGD-F 133 (616)
Q Consensus 57 ~g~-PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i-~~d-f 133 (616)
.+. ..|..+|+.+... ..+|+|+=....+......+. . ...+.++..+...|.+.|+........- ..+ +
T Consensus 7 n~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~-~-----~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v 79 (237)
T cd02526 7 NPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL-N-----SEKIELIHLGENLGIAKALNIGIKAALENGADYV 79 (237)
T ss_pred cCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc-c-----CCcEEEEECCCceehHHhhhHHHHHHHhCCCCEE
Confidence 345 7888888888877 567777655433322222221 0 1246666656667777776654332111 235 8
Q ss_pred EEEeCceecch-hHHHHH
Q 007143 134 VLISGDTVSNM-LLTQAL 150 (616)
Q Consensus 134 Llv~gD~i~~~-~l~~~l 150 (616)
+++.+|.+... .|..++
T Consensus 80 ~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 80 LLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred EEECCCCCcCHhHHHHHH
Confidence 88899996665 456664
No 304
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=25.20 E-value=76 Score=31.57 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=50.3
Q ss_pred eEEEEEeCCCC---CCCCCCCCCCCcccceeCCeehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEE
Q 007143 29 LQAILLADSFT---TKFRPITLERPKVLLPLVNVPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTV 105 (616)
Q Consensus 29 l~aVILA~g~~---~R~~PlT~~~PK~Llpi~g~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i 105 (616)
|++||.--.++ ||+.|. ++..--.=--.-|+..++..+.. +. |+|++.. +.+..+... ...+
T Consensus 1 m~~VIPvK~~~~aKSRLs~~---L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~-------~~g~ 65 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV---LSPEEREALALAMLRDVLAALRA--VD-VVVVSRD--PEVAALARA-------RLGA 65 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT---S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTTT----------SS
T ss_pred CeEEEEcCCCCccccccCcc---CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhh-------ccCC
Confidence 56777765554 667652 00000000014678999999988 66 7666652 222221110 1234
Q ss_pred EEEeCCCccCHHHHHHHHHhcccccCCEEEEeCce--ecchhHHHHHHHH
Q 007143 106 KTIESHNIISAGDALRLIYEQNVIHGDFVLISGDT--VSNMLLTQALQEH 153 (616)
Q Consensus 106 ~~i~~~~~~~~gdalr~~~~~~~i~~dfLlv~gD~--i~~~~l~~~l~~h 153 (616)
.++..+ ..|+-.|+..... ..-...++++++|+ +...++..++...
T Consensus 66 ~vl~d~-~~gLN~Al~~a~~-~~~~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 66 EVLPDP-GRGLNAALNAALA-AAGDDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp EEEE----S-HHHHHHHHHH--H--S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred eEecCC-CCCHHHHHHHHHh-ccCCCceEEeecCCccCCHHHHHHHHhcc
Confidence 556544 5688899887521 11124599999999 7888999998764
No 305
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=24.15 E-value=91 Score=26.29 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=24.1
Q ss_pred ceeCCeehHHHHHHHHHH--CCCcEEEEEcC
Q 007143 54 LPLVNVPMINYTLAWLEA--AGVAEVFVFCC 82 (616)
Q Consensus 54 lpi~g~PlI~y~Le~L~~--~Gv~eI~vv~~ 82 (616)
+-++++|+..|++.-+.+ .|.++|.|=..
T Consensus 4 i~vG~KPvmnYVlavlt~fn~g~~eV~iKar 34 (87)
T TIGR00285 4 VYIGNKPVMNYVLAVLTQLNSGADEVIIKAR 34 (87)
T ss_pred EEEcCCcHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 457899999999999987 48999988654
No 306
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=23.14 E-value=4.3e+02 Score=24.83 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=49.3
Q ss_pred cceeCC-eehHHHHHHHHHHCC--CcEEEEEcCCcHHH----HHHHHHhcCCCCCCCcEEEEEeCCCccCH---HHHHHH
Q 007143 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQ----VIDYLENSEWFSQPNFTVKTIESHNIISA---GDALRL 122 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~----i~~~l~~~~~~~~~~~~i~~i~~~~~~~~---gdalr~ 122 (616)
++|+-| .+.|..+|+.+...- --||+||.....+. ++++..... .+.+.++......|. +.++..
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~n~ 80 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYP-----NVDARLLIGGEKVGINPKVNNLIK 80 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCC-----CCcEEEEecCCcCCCCHhHHHHHH
Confidence 566655 556888888887742 24777766543332 333333211 244555554433332 223332
Q ss_pred HHhcccccCC-EEEEeCceecch-hHHHHHHH
Q 007143 123 IYEQNVIHGD-FVLISGDTVSNM-LLTQALQE 152 (616)
Q Consensus 123 ~~~~~~i~~d-fLlv~gD~i~~~-~l~~~l~~ 152 (616)
. ....+++ ++++-+|.+... -|..+++.
T Consensus 81 g--~~~a~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 81 G--YEEARYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred H--HHhCCCCEEEEECCCceEChhHHHHHHHH
Confidence 2 2234567 777788886554 45666554
No 307
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.01 E-value=3.2e+02 Score=26.06 Aligned_cols=100 Identities=24% Similarity=0.303 Sum_probs=55.3
Q ss_pred ccceeCC---eehHHHHHHHHHHCCCcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccc
Q 007143 52 VLLPLVN---VPMINYTLAWLEAAGVAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (616)
Q Consensus 52 ~Llpi~g---~PlI~y~Le~L~~~Gv~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~ 128 (616)
.|+|..+ .|=+.-.++.+..+|+ .++|+.+.....+..+... +.|.+|.. ...-.+-++|.+..+--
T Consensus 38 TLv~wd~~~~tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~--------l~v~fi~~-A~KP~~~~fr~Al~~m~ 107 (175)
T COG2179 38 TLVPWDNPDATPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEK--------LGVPFIYR-AKKPFGRAFRRALKEMN 107 (175)
T ss_pred ceecccCCCCCHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhh--------cCCceeec-ccCccHHHHHHHHHHcC
Confidence 3555554 5666666777777776 4555665556666655443 45666643 22345556665544444
Q ss_pred ccCCEEEEeCceecchhHHHHHHHHHHhhccCCCceEEEEEecC
Q 007143 129 IHGDFVLISGDTVSNMLLTQALQEHKERKKKDNNAVMTMIIKKS 172 (616)
Q Consensus 129 i~~dfLlv~gD~i~~~~l~~~l~~h~~~~~~d~~a~mT~v~~~~ 172 (616)
+..+=.++-||+++ .+++..|+. -.-|+.+.+.
T Consensus 108 l~~~~vvmVGDqL~----TDVlggnr~-------G~~tIlV~Pl 140 (175)
T COG2179 108 LPPEEVVMVGDQLF----TDVLGGNRA-------GMRTILVEPL 140 (175)
T ss_pred CChhHEEEEcchhh----hhhhccccc-------CcEEEEEEEe
Confidence 55555666788854 344444443 3445555554
No 308
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=22.11 E-value=3.9e+02 Score=29.33 Aligned_cols=99 Identities=17% Similarity=0.142 Sum_probs=58.3
Q ss_pred ccceeCC-eehHHHHHHHHHHCCC--cEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhccc
Q 007143 52 VLLPLVN-VPMINYTLAWLEAAGV--AEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNV 128 (616)
Q Consensus 52 ~Llpi~g-~PlI~y~Le~L~~~Gv--~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~ 128 (616)
.++|.-| ...|..+|+.+.+... -||+|+.....+...+.+.+. ... .-.+.++......|.+.|+..... .
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~--~~~-~~~v~vv~~~~n~Gka~AlN~gl~--~ 153 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDAL--LAE-DPRLRVIHLAHNQGKAIALRMGAA--A 153 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHH--HHh-CCCEEEEEeCCCCCHHHHHHHHHH--h
Confidence 5778777 4567888888877532 377777654333332222220 000 012455554455688888875432 2
Q ss_pred ccCC-EEEEeCceecchh-HHHHHHHHHH
Q 007143 129 IHGD-FVLISGDTVSNML-LTQALQEHKE 155 (616)
Q Consensus 129 i~~d-fLlv~gD~i~~~~-l~~~l~~h~~ 155 (616)
.++| ++++-+|.+.+.+ +..+++.+.+
T Consensus 154 a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 154 ARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred CCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 4567 7888999977664 6677665543
No 309
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=21.57 E-value=3.9e+02 Score=24.45 Aligned_cols=70 Identities=20% Similarity=0.334 Sum_probs=47.1
Q ss_pred cCCCeEEEEEeCCC-CCCCCC-CCCCCCcccceeCCe------ehHHHHHHHHHHCCCcEEEEEcCCc---HHHHHHHHH
Q 007143 25 ARQPLQAILLADSF-TTKFRP-ITLERPKVLLPLVNV------PMINYTLAWLEAAGVAEVFVFCCAH---SKQVIDYLE 93 (616)
Q Consensus 25 ~~~~l~aVILA~g~-~~R~~P-lT~~~PK~Llpi~g~------PlI~y~Le~L~~~Gv~eI~vv~~~~---~~~i~~~l~ 93 (616)
++-.+.+.+.++-. .+||-| ++.-.+|+.+-|.-| -=|+.+-++|..+|-+.||+..... .+++.+|+.
T Consensus 63 ~dadvi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred hccceeeeeecccCccccCCcccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHH
Confidence 34456677776654 477876 555566665444322 2467888999999999998877654 567777775
Q ss_pred h
Q 007143 94 N 94 (616)
Q Consensus 94 ~ 94 (616)
.
T Consensus 143 ~ 143 (148)
T COG4917 143 S 143 (148)
T ss_pred h
Confidence 4
No 310
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.99 E-value=5.3e+02 Score=24.36 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=53.0
Q ss_pred cceeCC-eehHHHHHHHHHHCC--CcEEEEEcCCcHHHHHHHHHhcCCCCCCCcEEEEEeCCCccCHHHHHHHHHhcccc
Q 007143 53 LLPLVN-VPMINYTLAWLEAAG--VAEVFVFCCAHSKQVIDYLENSEWFSQPNFTVKTIESHNIISAGDALRLIYEQNVI 129 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~G--v~eI~vv~~~~~~~i~~~l~~~~~~~~~~~~i~~i~~~~~~~~gdalr~~~~~~~i 129 (616)
++|.-| .+.|..+|+.+...- --+|+|+-....+...+.+.+ ..+.++.. ..|.|.++.... ...
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~--------~~~~~~~~--~~g~~~a~n~g~--~~a 71 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS--------AGVVVISS--PKGRARQMNAGA--AAA 71 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc--------CCeEEEeC--CcCHHHHHHHHH--Hhc
Confidence 456655 457888888888753 346777765555555555544 12444433 346677765432 234
Q ss_pred cCC-EEEEeCceecch-hHHHHHHHHH
Q 007143 130 HGD-FVLISGDTVSNM-LLTQALQEHK 154 (616)
Q Consensus 130 ~~d-fLlv~gD~i~~~-~l~~~l~~h~ 154 (616)
+++ ++++..|..... .+..++..+.
T Consensus 72 ~~~~i~~~D~D~~~~~~~l~~l~~~~~ 98 (221)
T cd02522 72 RGDWLLFLHADTRLPPDWDAAIIETLR 98 (221)
T ss_pred cCCEEEEEcCCCCCChhHHHHHHHHhh
Confidence 567 788888885544 4566544433
No 311
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=20.06 E-value=6.2e+02 Score=24.09 Aligned_cols=98 Identities=15% Similarity=0.115 Sum_probs=53.4
Q ss_pred cceeCC-eehHHHHHHHHHHCCC---cEEEEEcCCcHH----HHHHHHHhcCCCCCCCcEEEEEeC--CCccCHHHHHHH
Q 007143 53 LLPLVN-VPMINYTLAWLEAAGV---AEVFVFCCAHSK----QVIDYLENSEWFSQPNFTVKTIES--HNIISAGDALRL 122 (616)
Q Consensus 53 Llpi~g-~PlI~y~Le~L~~~Gv---~eI~vv~~~~~~----~i~~~l~~~~~~~~~~~~i~~i~~--~~~~~~gdalr~ 122 (616)
++|.-| ...|..+|+.|...-. -||+|+-....+ .++++..+... .++.+..... ....|.+.|.-.
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~G~~~a~N~ 78 (219)
T cd06913 2 ILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLED---SGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred EEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcc---cCeEEEEecccCCCCccHHHHHHH
Confidence 345544 5688888988877532 377777654433 33444332111 1223322221 233577766654
Q ss_pred HHhcccccCC-EEEEeCceecc-hhHHHHHHHHHH
Q 007143 123 IYEQNVIHGD-FVLISGDTVSN-MLLTQALQEHKE 155 (616)
Q Consensus 123 ~~~~~~i~~d-fLlv~gD~i~~-~~l~~~l~~h~~ 155 (616)
.. ...+++ ++++.+|.+.. -.+..++....+
T Consensus 79 g~--~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 111 (219)
T cd06913 79 AI--AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQ 111 (219)
T ss_pred HH--HhcCCCEEEEECCCccCChhHHHHHHHHHHh
Confidence 32 234667 78888887544 457777766554
Done!