Query 007144
Match_columns 616
No_of_seqs 83 out of 85
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 19:32:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14932 HAUS-augmin3: HAUS au 100.0 1.6E-55 3.5E-60 450.4 22.9 249 28-291 1-256 (256)
2 PRK11637 AmiB activator; Provi 95.2 1.8 4E-05 48.0 19.8 104 99-204 46-151 (428)
3 PF00038 Filament: Intermediat 91.1 18 0.00039 38.1 18.5 81 106-186 53-136 (312)
4 PF14932 HAUS-augmin3: HAUS au 88.2 4.1 8.9E-05 42.4 10.7 129 26-184 12-149 (256)
5 PF07888 CALCOCO1: Calcium bin 86.0 75 0.0016 36.9 19.8 26 412-437 435-460 (546)
6 KOG4674 Uncharacterized conser 85.3 1.4E+02 0.003 39.4 35.5 30 99-128 688-717 (1822)
7 PF12128 DUF3584: Protein of u 80.9 1.7E+02 0.0037 37.2 30.8 42 393-434 840-881 (1201)
8 COG4942 Membrane-bound metallo 78.3 1.2E+02 0.0027 34.1 19.2 58 100-157 38-95 (420)
9 PF13870 DUF4201: Domain of un 71.4 45 0.00098 32.5 10.8 107 262-384 58-164 (177)
10 PRK11637 AmiB activator; Provi 70.6 1.8E+02 0.0039 32.4 18.9 133 268-405 55-195 (428)
11 KOG4674 Uncharacterized conser 68.7 3.9E+02 0.0085 35.5 31.5 156 266-428 911-1077(1822)
12 PF15397 DUF4618: Domain of un 62.4 2.1E+02 0.0046 30.2 14.0 24 319-342 199-222 (258)
13 KOG0964 Structural maintenance 62.1 2.2E+02 0.0048 35.4 15.5 29 55-83 208-240 (1200)
14 PF04111 APG6: Autophagy prote 60.3 63 0.0014 34.8 10.1 43 99-141 49-91 (314)
15 KOG0804 Cytoplasmic Zn-finger 58.6 71 0.0015 36.1 10.2 85 109-193 370-454 (493)
16 PF04201 TPD52: Tumour protein 55.3 95 0.0021 30.6 9.4 84 97-185 26-109 (162)
17 PF12325 TMF_TATA_bd: TATA ele 55.0 1.1E+02 0.0024 28.6 9.4 76 101-180 17-92 (120)
18 PF09730 BicD: Microtubule-ass 53.9 4.8E+02 0.01 31.6 32.3 59 265-334 263-321 (717)
19 COG0497 RecN ATPase involved i 53.2 4.1E+02 0.009 31.1 15.5 84 262-349 302-385 (557)
20 PF04912 Dynamitin: Dynamitin 52.5 1.7E+02 0.0037 32.3 12.1 115 480-614 263-388 (388)
21 PF04111 APG6: Autophagy prote 51.7 1.6E+02 0.0034 31.8 11.4 46 99-144 42-87 (314)
22 PF04849 HAP1_N: HAP1 N-termin 49.9 3.7E+02 0.008 29.2 19.2 77 258-339 226-302 (306)
23 PF12718 Tropomyosin_1: Tropom 49.2 2.2E+02 0.0048 27.1 10.8 85 98-182 19-106 (143)
24 PF12128 DUF3584: Protein of u 47.5 7.2E+02 0.016 31.8 34.7 23 411-433 732-754 (1201)
25 PF08232 Striatin: Striatin fa 46.2 1.1E+02 0.0024 28.9 8.2 57 381-437 5-61 (134)
26 PRK10869 recombination and rep 45.5 3.9E+02 0.0084 31.1 14.1 97 262-368 301-397 (553)
27 COG3074 Uncharacterized protei 45.3 93 0.002 26.6 6.5 52 100-151 25-76 (79)
28 KOG0971 Microtubule-associated 45.2 5.2E+02 0.011 32.1 14.8 181 101-339 291-474 (1243)
29 COG4372 Uncharacterized protei 44.5 2.1E+02 0.0046 32.0 10.8 75 92-170 70-144 (499)
30 PF14662 CCDC155: Coiled-coil 44.2 2.3E+02 0.0049 28.8 10.2 24 163-186 84-107 (193)
31 cd07627 BAR_Vps5p The Bin/Amph 42.6 3.7E+02 0.008 27.1 13.7 51 279-340 113-163 (216)
32 KOG4360 Uncharacterized coiled 42.0 2.8E+02 0.0061 32.1 11.6 71 316-393 162-246 (596)
33 cd07638 BAR_ACAP2 The Bin/Amph 41.4 1.8E+02 0.0039 29.5 9.3 23 169-191 56-78 (200)
34 PRK14127 cell division protein 40.6 1.3E+02 0.0028 27.8 7.3 49 88-139 21-69 (109)
35 PF03962 Mnd1: Mnd1 family; I 37.9 3.4E+02 0.0074 27.1 10.6 11 217-227 160-170 (188)
36 PF13851 GAS: Growth-arrest sp 37.8 2.5E+02 0.0054 28.3 9.7 20 163-182 139-158 (201)
37 PF07798 DUF1640: Protein of u 37.6 3.7E+02 0.0079 26.3 10.7 17 2-18 3-19 (177)
38 cd07601 BAR_APPL The Bin/Amphi 37.0 4.2E+02 0.0091 27.2 11.2 50 171-229 62-117 (215)
39 PRK10884 SH3 domain-containing 36.8 3.1E+02 0.0068 27.9 10.2 20 109-128 95-114 (206)
40 PF14662 CCDC155: Coiled-coil 36.7 3.7E+02 0.008 27.3 10.4 25 163-187 105-129 (193)
41 cd07603 BAR_ACAPs The Bin/Amph 36.6 2.2E+02 0.0048 28.7 9.1 55 171-229 58-113 (200)
42 cd07637 BAR_ACAP3 The Bin/Amph 34.2 2.3E+02 0.0049 28.7 8.7 55 171-229 58-113 (200)
43 COG3883 Uncharacterized protei 33.3 6.2E+02 0.013 26.9 16.1 34 108-141 39-72 (265)
44 PF08317 Spc7: Spc7 kinetochor 33.2 3E+02 0.0064 29.7 10.0 57 101-157 210-266 (325)
45 COG1382 GimC Prefoldin, chaper 32.5 1.3E+02 0.0029 28.1 6.2 41 99-139 69-109 (119)
46 cd07602 BAR_RhoGAP_OPHN1-like 32.5 3.2E+02 0.0069 27.9 9.5 20 172-191 65-84 (207)
47 cd07606 BAR_SFC_plant The Bin/ 32.4 2.9E+02 0.0063 28.0 9.2 17 175-191 64-80 (202)
48 PF03634 TCP: TCP family trans 31.8 20 0.00043 33.7 0.7 26 3-32 29-54 (138)
49 COG1579 Zn-ribbon protein, pos 30.6 5.2E+02 0.011 27.1 10.8 50 91-140 29-78 (239)
50 PRK15422 septal ring assembly 30.2 3.8E+02 0.0082 23.5 8.7 34 109-142 6-39 (79)
51 PF09304 Cortex-I_coil: Cortex 30.1 2.9E+02 0.0064 25.5 7.8 55 104-158 20-74 (107)
52 PF11559 ADIP: Afadin- and alp 28.4 5.1E+02 0.011 24.4 11.0 16 8-23 9-24 (151)
53 KOG0612 Rho-associated, coiled 28.2 1.4E+03 0.031 29.5 35.0 86 98-187 463-549 (1317)
54 TIGR03752 conj_TIGR03752 integ 27.9 4.7E+02 0.01 30.1 10.6 77 101-181 60-137 (472)
55 PF07106 TBPIP: Tat binding pr 27.4 3.2E+02 0.0069 26.4 8.3 56 281-345 86-141 (169)
56 PF07851 TMPIT: TMPIT-like pro 26.7 5.4E+02 0.012 28.2 10.5 30 410-441 216-245 (330)
57 PF04740 LXG: LXG domain of WX 26.6 3.5E+02 0.0076 26.5 8.6 30 99-128 97-127 (204)
58 KOG1962 B-cell receptor-associ 26.6 1.9E+02 0.0042 29.7 6.8 52 99-150 150-201 (216)
59 PF05103 DivIVA: DivIVA protei 26.1 41 0.00088 30.7 1.7 50 89-141 17-66 (131)
60 PF09727 CortBP2: Cortactin-bi 26.1 7E+02 0.015 25.3 12.0 93 341-433 56-152 (192)
61 cd08776 DED_Caspase-like_repea 26.0 1E+02 0.0022 26.3 3.9 50 35-86 16-65 (71)
62 PF15619 Lebercilin: Ciliary p 25.9 6.9E+02 0.015 25.1 10.5 85 101-185 20-107 (194)
63 PF10473 CENP-F_leu_zip: Leuci 25.9 5.7E+02 0.012 24.6 9.4 23 114-136 52-74 (140)
64 PRK09039 hypothetical protein; 25.7 5.1E+02 0.011 28.2 10.3 41 101-141 117-157 (343)
65 PRK15422 septal ring assembly 25.0 3.1E+02 0.0067 24.0 6.6 50 101-150 26-75 (79)
66 PF03801 Ndc80_HEC: HEC/Ndc80p 24.9 19 0.00042 34.9 -0.7 38 5-46 96-139 (157)
67 PF06120 Phage_HK97_TLTM: Tail 24.5 5.1E+02 0.011 28.1 9.7 35 102-136 76-110 (301)
68 KOG0977 Nuclear envelope prote 24.3 1.2E+03 0.026 27.4 25.6 80 263-342 38-121 (546)
69 TIGR00293 prefoldin, archaeal 23.9 4.8E+02 0.01 23.7 8.4 38 104-141 3-40 (126)
70 PRK10884 SH3 domain-containing 23.7 5.4E+02 0.012 26.2 9.4 25 100-124 93-117 (206)
71 smart00787 Spc7 Spc7 kinetocho 23.4 6E+02 0.013 27.5 10.2 98 100-201 204-303 (312)
72 cd07664 BAR_SNX2 The Bin/Amphi 23.3 2.1E+02 0.0045 29.6 6.4 99 102-219 24-126 (234)
73 PRK10722 hypothetical protein; 23.0 5E+02 0.011 27.3 8.9 43 411-453 179-222 (247)
74 PF15619 Lebercilin: Ciliary p 22.7 7.9E+02 0.017 24.7 13.5 88 321-433 13-100 (194)
75 PF08614 ATG16: Autophagy prot 22.7 4.4E+02 0.0095 26.1 8.5 96 73-172 81-177 (194)
76 KOG4010 Coiled-coil protein TP 22.6 8.2E+02 0.018 24.9 10.6 39 97-135 41-79 (208)
77 TIGR03185 DNA_S_dndD DNA sulfu 22.1 1.3E+03 0.029 27.1 21.1 60 279-340 389-448 (650)
78 PF15175 SPATA24: Spermatogene 21.2 4.2E+02 0.0092 25.8 7.4 33 141-173 69-103 (153)
79 KOG0161 Myosin class II heavy 21.2 2.2E+03 0.048 29.3 37.0 147 336-502 1585-1733(1930)
80 PRK09039 hypothetical protein; 21.2 3.9E+02 0.0085 29.1 8.3 65 267-342 123-187 (343)
81 COG3883 Uncharacterized protei 21.1 4.6E+02 0.01 27.9 8.5 41 101-141 39-79 (265)
82 COG4026 Uncharacterized protei 20.9 5.6E+02 0.012 26.8 8.7 75 104-196 132-206 (290)
83 TIGR03185 DNA_S_dndD DNA sulfu 20.9 1.4E+03 0.031 26.9 24.8 83 268-350 217-299 (650)
84 PF08317 Spc7: Spc7 kinetochor 20.8 1.1E+03 0.023 25.4 22.2 88 316-433 78-167 (325)
85 cd00890 Prefoldin Prefoldin is 20.5 6.2E+02 0.014 22.6 8.6 38 104-141 3-40 (129)
86 PF09006 Surfac_D-trimer: Lung 20.1 91 0.002 24.5 2.3 19 597-615 2-20 (46)
No 1
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=100.00 E-value=1.6e-55 Score=450.44 Aligned_cols=249 Identities=31% Similarity=0.419 Sum_probs=223.0
Q ss_pred ccCCCCCchhHHHHHhccCCCCCCCCHHHHhHHHHHHhcCcCCChhhHHHHHhhcccccCCCCchhhhccchhhhHHHHH
Q 007144 28 WPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIRE 107 (616)
Q Consensus 28 Wlf~~~e~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~aLd~al~~i~~~~~~~~~~ed~~~~ee~le~l~~ 107 (616)
|||++|+++|||+|||+||+++||||++|+++|++|+++||||+|+|||+||++|++++.+..++++ .
T Consensus 1 Wlf~~~e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e------------~ 68 (256)
T PF14932_consen 1 WLFDDEEFESFLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEE------------E 68 (256)
T ss_pred CCCCCccHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccch------------H
Confidence 9999999999999999999999999999999999999999999999999999999986666555533 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHh
Q 007144 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (616)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~l~~~v~~L~ 187 (616)
++++|+++++.++++++..++++|+|+.+++.+++....+....+++++.+++....+.+.+.++|+.++.+++.|.+++
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999888877777777777777777775
Q ss_pred hh----ccC--CCCccceeccCChhhhhhcchhHHHHHHHHHhhccCCcccccccccCccccccccCCcccccch-hhhh
Q 007144 188 HY----HSG--DEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVR-DLEK 260 (616)
Q Consensus 188 ~y----~s~--~~~~vflsq~~l~~Yl~qee~~t~~Lt~y~kKqF~~g~~~~v~~e~~s~~~~~~L~D~~~~~~d-~~e~ 260 (616)
.+ +++ ++||+|||||||++|+++|++||+||++||||||++|++++| |+++.++|+ +.|+++|.++ +.++
T Consensus 149 ~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF~~g~~~~~--e~s~~~~~~-lld~~~~~~~~d~~e 225 (256)
T PF14932_consen 149 SELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQFFQGISELV--ESSNEDNFQ-LLDISNPSIRGDEEE 225 (256)
T ss_pred HHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhcccccchhh--ccccchhhH-HhhccccccccchHH
Confidence 54 444 678899999999999999999999999999999999999999 677777777 7889999885 5566
Q ss_pred hhhhhHHHHHHhHHhHhhhHHHHHHHHHHHH
Q 007144 261 SHHQRVSELQRLRSVFGTSERQWVEAQVENA 291 (616)
Q Consensus 261 ~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~ 291 (616)
.+++|+.||+|||++|+||+||||.|+|+++
T Consensus 226 ~~~~~~~EL~rLq~~~~~aq~q~I~~ka~~~ 256 (256)
T PF14932_consen 226 VLEERRSELARLQSAYICAQHQLIQAKAEVA 256 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666677999999999999999999999863
No 2
>PRK11637 AmiB activator; Provisional
Probab=95.17 E-value=1.8 Score=48.01 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=59.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHH
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~ 178 (616)
.+.+++++..+..+..++..+++.+.....+++.++.....+..............+..+...+..+...-.+++..-..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777778888888887778777777777777777666665555555555666666655444444443333333333
Q ss_pred HHHHHHHHhhhccCCCCc--cceeccCC
Q 007144 179 IASTAQELAHYHSGDEDG--IYLAYSDF 204 (616)
Q Consensus 179 l~~~v~~L~~y~s~~~~~--vflsq~~l 204 (616)
+..-+.. .|-++.... ++++.-|+
T Consensus 126 l~~rlra--~Y~~g~~~~l~vLl~a~~~ 151 (428)
T PRK11637 126 LAAQLDA--AFRQGEHTGLQLILSGEES 151 (428)
T ss_pred HHHHHHH--HHHcCCCcHHHHHhcCCCh
Confidence 3333322 454432221 45555554
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.11 E-value=18 Score=38.06 Aligned_cols=81 Identities=15% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhh---hhhhHHHHHhHHHHHHHHHH
Q 007144 106 REATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILD---DGLSARNLQMNDVLGRIAST 182 (616)
Q Consensus 106 ~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~---~~l~~~n~k~n~~L~~l~~~ 182 (616)
+.++..++..+.++...+..+..+++.+...+..+........+....+...+.... +........+.+.++.|-..
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 345555666666666666666666666666555554333322222233332222211 22444445566666666655
Q ss_pred HHHH
Q 007144 183 AQEL 186 (616)
Q Consensus 183 v~~L 186 (616)
..-+
T Consensus 133 l~fl 136 (312)
T PF00038_consen 133 LEFL 136 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 4
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=88.24 E-value=4.1 Score=42.42 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=67.3
Q ss_pred CcccCCCCC-----chhHHHHHhccCCCCCCCCHHHHh-HHHHHHhcC-cC--CChhhHHHHHhhcccccCCCCchhhhc
Q 007144 26 FEWPFQYDD-----ARPILDWICSSLRPSNVLSLSELS-QFEQFLQEE-KL--LEGEDLESAFDSISAFSSRRDDQEAVF 96 (616)
Q Consensus 26 fdWlf~~~e-----~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sG-ki--Leg~aLd~al~~i~~~~~~~~~~ed~~ 96 (616)
|+|+|.+.. +..=+.=|-.=+...+||+.++|. ++....... +. +++ .+.++.
T Consensus 12 L~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e-----------------~~le~L- 73 (256)
T PF14932_consen 12 LDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEE-----------------EDLEAL- 73 (256)
T ss_pred HHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccch-----------------HHHHHH-
Confidence 577775433 222233333334566799999998 344444321 12 221 223322
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHH
Q 007144 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176 (616)
Q Consensus 97 ~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L 176 (616)
+++++.|++..+.+......++...+.+.+...+|+..... .... .+.......+.++..|..||.++
T Consensus 74 --e~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~--------~~~~--l~~~~~~l~~~~~k~~~~l~~l~ 141 (256)
T PF14932_consen 74 --EEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEE--------AQKK--LKKAQKELSAECSKLNNELNQLL 141 (256)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555565666666666666666666666655555553211 1111 11111223445778888888888
Q ss_pred HHHHHHHH
Q 007144 177 GRIASTAQ 184 (616)
Q Consensus 177 ~~l~~~v~ 184 (616)
+.++..+.
T Consensus 142 ~~v~~l~~ 149 (256)
T PF14932_consen 142 GEVSKLAS 149 (256)
T ss_pred HHHHHHHH
Confidence 77766655
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=86.00 E-value=75 Score=36.91 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhHHh
Q 007144 412 LLKVIESELQGYLSATKSRVGRCLAL 437 (616)
Q Consensus 412 ~L~~l~~eL~~~~~~~~~R~~~~~~~ 437 (616)
+|..=.++|-.|.-.+..|+++.++-
T Consensus 435 ql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 435 QLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44455677888888888888887766
No 6
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=85.26 E-value=1.4e+02 Score=39.39 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~ 128 (616)
.+.++.|++.++.|+.++.+|..+...++.
T Consensus 688 ~ekle~L~~~ie~~K~e~~tL~er~~~l~~ 717 (1822)
T KOG4674|consen 688 KEKLENLEKNLELTKEEVETLEERNKNLQS 717 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777778888887777766655544
No 7
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.86 E-value=1.7e+02 Score=37.19 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Q 007144 393 QFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRC 434 (616)
Q Consensus 393 elL~la~e~E~r~~~~~~~~L~~l~~eL~~~~~~~~~R~~~~ 434 (616)
.-+.=.++....++......++.....+......+..-+..+
T Consensus 840 ~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 840 NQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444555555555555555555555555555555444
No 8
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.30 E-value=1.2e+02 Score=34.06 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=43.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhh
Q 007144 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGH 157 (616)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~ 157 (616)
..++.++.++++++.++..-+++...++.++..++.-.+.+.+..+.-........++
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5788888999999999999999999999988888887777775444333333444444
No 9
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=71.42 E-value=45 Score=32.50 Aligned_cols=107 Identities=20% Similarity=0.188 Sum_probs=68.6
Q ss_pred hhhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhh
Q 007144 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (616)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~ 341 (616)
.+.|-.||.+|+..++.+-+.+-+.+-......+-+..++......... ...++..+.....+...++.....+
T Consensus 58 IeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~----~~~~r~~l~~~k~~r~k~~~~~~~l-- 131 (177)
T PF13870_consen 58 IEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE----LAKLREELYRVKKERDKLRKQNKKL-- 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3556669999999998888888777776666666666666555433221 2355555555555555555554444
Q ss_pred ccchHHHHHHhchhccccccchhhHHHHhHHHHHHhHHHHHHH
Q 007144 342 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINH 384 (616)
Q Consensus 342 ~~lp~l~ke~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~v~n~ 384 (616)
+.-.-+.++|-|--||+-.+ ++....++.|.++
T Consensus 132 -------~~~~~~~~~P~ll~Dy~~~~---~~~~~l~~~i~~l 164 (177)
T PF13870_consen 132 -------RQQGGLLGVPALLRDYDKTK---EEVEELRKEIKEL 164 (177)
T ss_pred -------HHhcCCCCCcHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33456789999999995554 5555555555554
No 10
>PRK11637 AmiB activator; Provisional
Probab=70.59 E-value=1.8e+02 Score=32.37 Aligned_cols=133 Identities=8% Similarity=0.048 Sum_probs=62.0
Q ss_pred HHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhhccchHH
Q 007144 268 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDL 347 (616)
Q Consensus 268 EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~~~lp~l 347 (616)
++..++.-..-.+.+.-.+..+......-+..+..+....+ .++..+..+|..+..+|..++.+++..... +-..
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~----~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~-l~~r 129 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQ----NTLNQLNKQIDELNASIAKLEQQQAAQERL-LAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 44444444444444444444454444444444443332221 224566666666666776666666655433 4444
Q ss_pred HHHHhchhccc---cccchhhH-HHHh----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007144 348 CWELAQLQDTY---ILQGDYDL-KVMR----QELYISRQKAFINHLINQLARHQFLRLACHLEKRN 405 (616)
Q Consensus 348 ~ke~AqL~~~p---Il~GD~dL-qiaR----Q~yy~srQ~~v~n~Li~Q~Ar~elL~la~e~E~r~ 405 (616)
++...+.-+.+ ++-+..+. .+.| -.|+......+++.+..++..+.=.+-.++.++..
T Consensus 130 lra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~ 195 (428)
T PRK11637 130 LDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQ 195 (428)
T ss_pred HHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544432322 34443322 1122 23344445556666665555554444333333333
No 11
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.74 E-value=3.9e+02 Score=35.55 Aligned_cols=156 Identities=20% Similarity=0.153 Sum_probs=80.0
Q ss_pred HHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhhcc--
Q 007144 266 VSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSET-- 343 (616)
Q Consensus 266 ~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~~~-- 343 (616)
..+..+|+--+.-|..+.-+-++.+.++..+|..+++...-...-+..++++++.++.++..+|..|+.++..+..+-
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666666666666665554322222223345555556666666666665555554221
Q ss_pred --------chHHHHHHhchhccccccchh-hHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007144 344 --------IPDLCWELAQLQDTYILQGDY-DLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLK 414 (616)
Q Consensus 344 --------lp~l~ke~AqL~~~pIl~GD~-dLqiaRQ~yy~srQ~~v~n~Li~Q~Ar~elL~la~e~E~r~~~~~~~~L~ 414 (616)
+-.++++ .++|+.++ ++.-++-++-.. =..+-+.|-.+.--..-.+--|+-|+-.|.++-.-|.
T Consensus 991 ~~k~~e~~~~~~~~e------~~sl~ne~~~~~~~~s~~~~~-~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~ 1063 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSRE------ISSLQNELKSLLKAASQANEQ-IEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLI 1063 (1822)
T ss_pred cccchhhhHHHHHHH------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222 23344444 222222222211 1122333333333334445568888888888888887
Q ss_pred HHHHHHHhhHHHHH
Q 007144 415 VIESELQGYLSATK 428 (616)
Q Consensus 415 ~l~~eL~~~~~~~~ 428 (616)
.+..++-.....+.
T Consensus 1064 kl~ee~~~~~~e~~ 1077 (1822)
T KOG4674|consen 1064 KLREEFAKCNDELL 1077 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776665555543
No 12
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=62.41 E-value=2.1e+02 Score=30.21 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=14.4
Q ss_pred hhhHhhHHHHHHhHHHHHHHhhhc
Q 007144 319 KRKHVELVGELSNLHHKEEKLLSE 342 (616)
Q Consensus 319 ~~k~~~l~~el~~Le~~i~~l~~~ 342 (616)
+.-|.++..+|..|+.+|+.+...
T Consensus 199 re~i~el~e~I~~L~~eV~~L~~~ 222 (258)
T PF15397_consen 199 REEIDELEEEIPQLRAEVEQLQAQ 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333566666666666666666554
No 13
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.13 E-value=2.2e+02 Score=35.38 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=19.2
Q ss_pred HHHhHHHHHHhcCcCCC----hhhHHHHHhhcc
Q 007144 55 SELSQFEQFLQEEKLLE----GEDLESAFDSIS 83 (616)
Q Consensus 55 ~EL~~f~~L~~sGkiLe----g~aLd~al~~i~ 83 (616)
+||..|..|.+.-+.|| ..++.++...+.
T Consensus 208 eeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~ 240 (1200)
T KOG0964|consen 208 EELEKYQKLDKERRSLEYTIYDRELNEINGELE 240 (1200)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHH
Confidence 58899999998877665 344444444433
No 14
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=60.33 E-value=63 Score=34.80 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
.+++++++.+.+.+.+++..+++....+..++..|+.....+.
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666555555
No 15
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.65 E-value=71 Score=36.09 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHhh
Q 007144 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELAH 188 (616)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~l~~~v~~L~~ 188 (616)
...++++.+.+++.+..++.++++++............++..-..-.+++++.++.....+......++.|-+-+..|+.
T Consensus 370 ~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 33344444555555555555555555544444434444444445555666666666666666666667777777777877
Q ss_pred hccCC
Q 007144 189 YHSGD 193 (616)
Q Consensus 189 y~s~~ 193 (616)
|..++
T Consensus 450 ~le~q 454 (493)
T KOG0804|consen 450 FLEAQ 454 (493)
T ss_pred ehhhh
Confidence 75543
No 16
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.33 E-value=95 Score=30.56 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=50.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHH
Q 007144 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176 (616)
Q Consensus 97 ~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L 176 (616)
..|++-|.|+.++-++++||.+|.+-+..+..+..+|.... . .--+..=.+..++-+..++.+-.-.-.|..+++
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL---G--it~l~elkqnlskg~~~vq~S~aY~gqKTsaa~ 100 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL---G--ITPLSELKQNLSKGWHDVQDSNAYKGQKTSAAF 100 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---C--CchHHHHHHHHHHHhHhhhchhHHHHHHHHHHH
Confidence 45678899999999999999999999998888766665431 1 000001112223333333322222235677777
Q ss_pred HHHHHHHHH
Q 007144 177 GRIASTAQE 185 (616)
Q Consensus 177 ~~l~~~v~~ 185 (616)
..+...|..
T Consensus 101 s~~g~~i~~ 109 (162)
T PF04201_consen 101 SSVGSAISR 109 (162)
T ss_pred HHHHHHHHH
Confidence 777777654
No 17
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=55.00 E-value=1.1e+02 Score=28.61 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHHHH
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~l~ 180 (616)
.++.|...+..++-|+..++.++..+...++.+..-...+.... ....+..+.+......+...+.+-++.|+-+-
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~----e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN----EELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67788888888999999999999988888888887766665222 22234444444545556666666666665543
No 18
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=53.93 E-value=4.8e+02 Score=31.60 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=38.3
Q ss_pred hHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHH
Q 007144 265 RVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHH 334 (616)
Q Consensus 265 r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~ 334 (616)
...|+..|+ .|+.++..+...+.+.|+....+....+.- ....+.++..|...+..+..
T Consensus 263 ~~~EiqKL~-------qQL~qve~EK~~L~~~L~e~Q~qLe~a~~a----ls~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 263 NLSEIQKLK-------QQLLQVEREKSSLLSNLQESQKQLEHAQGA----LSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred chHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 366888876 788888888888888888887776433211 23444555555555554443
No 19
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.20 E-value=4.1e+02 Score=31.14 Aligned_cols=84 Identities=21% Similarity=0.219 Sum_probs=41.8
Q ss_pred hhhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhh
Q 007144 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (616)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~ 341 (616)
.+.|+..|.+|.-=|.++=-.++.-..+.. +-|..|.....+... ...+...+..+.......|+..+++...=+.
T Consensus 302 ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~---~el~~L~~~~~~~~~-Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 302 VEERLFALKSLARKYGVTIEDLLEYLDKIK---EELAQLDNSEESLEA-LEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHHhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888876655554433322 222222211111100 0112234445555556666666666555544
Q ss_pred ccchHHHH
Q 007144 342 ETIPDLCW 349 (616)
Q Consensus 342 ~~lp~l~k 349 (616)
..|-.-++
T Consensus 378 ~~v~~eL~ 385 (557)
T COG0497 378 KEVTAELK 385 (557)
T ss_pred HHHHHHHH
Confidence 44443333
No 20
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=52.54 E-value=1.7e+02 Score=32.27 Aligned_cols=115 Identities=17% Similarity=0.317 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhc-CCcchhhhHHHHHHHHHHHHHhhhccCCCCCCCCCChhhhHHHHHHHHHHHH--
Q 007144 480 APGIVQQISGLRADLTALQSDLENS-LPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINAK-- 556 (616)
Q Consensus 480 ~~~L~~~~~~L~~dl~~lq~~L~~~-~~e~~~~~~~~L~~~~~~l~q~~~~~st~~qp~Lt~~el~~~l~~le~~~~~-- 556 (616)
..++......|..++..+...-... ........|++|+..+..++.+ .=.=|.|.+.|..|..++..
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~----------~~~lP~lv~RL~tL~~lH~~a~ 332 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPY----------APSLPSLVERLKTLKSLHEEAA 332 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHH----------hhhhhHHHHHHHHHHHHHHHHH
Confidence 3677777777777776655433322 1113345688888887777766 11225555555555555433
Q ss_pred --------HHHHHHHHHHHHHhhHHhhhcCChhhhhhhhhHhhhcCChhHHHHHHHHHHHHHhhhc
Q 007144 557 --------LSVAVEEVTLEHCKKNEIIKHHSQEVGLQRRVFVDFFCNPERLRSQVRELTARVRALQ 614 (616)
Q Consensus 557 --------L~~~~~dv~~~~~~Kr~~L~~~~~~~~~eR~LyV~Ff~dp~~L~~~V~~Le~~~~a~~ 614 (616)
|.....++...+++=...|.. ++.. |=.|-..+.+.|+.|+.|+.+||
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~------ve~~----~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNK------VEEK----FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHhccC
Confidence 344444444444443344432 2222 88899999999999999999875
No 21
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.70 E-value=1.6e+02 Score=31.78 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGR 144 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~ 144 (616)
.+.++++.++++.|+.|...+.+.+..+......+......+....
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777766666666666666666666555554333
No 22
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=49.94 E-value=3.7e+02 Score=29.16 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=41.3
Q ss_pred hhhhhhhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHH
Q 007144 258 LEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEE 337 (616)
Q Consensus 258 ~e~~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~ 337 (616)
.+....++- |+.+|.+=.+-.|+..-.--+++..+...|...++.-..- ....+.|..|-.++..-+.....++.
T Consensus 226 ~Ee~~rQQE-EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L----~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 226 TEENRRQQE-EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL----QAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 8888887666666666666666666666665554332111 11134555555555555555554444
Q ss_pred Hh
Q 007144 338 KL 339 (616)
Q Consensus 338 ~l 339 (616)
.+
T Consensus 301 ~l 302 (306)
T PF04849_consen 301 TL 302 (306)
T ss_pred Hh
Confidence 44
No 23
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.15 E-value=2.2e+02 Score=27.15 Aligned_cols=85 Identities=14% Similarity=0.293 Sum_probs=49.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHH---HHhhhhhhhhhhhhhhhhhhHHHHHhHH
Q 007144 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRA---RVAATSTVNGHLSILDDGLSARNLQMND 174 (616)
Q Consensus 98 ~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~---l~~~~~~~~~~L~~~~~~l~~~n~k~n~ 174 (616)
++..+++++......+.+|..|++....+..++++++..........-. ..+.-+..++.+..+.+.|-....++..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3557777778888888888888888888888888877765555422111 1111123444444444444444444444
Q ss_pred HHHHHHHH
Q 007144 175 VLGRIAST 182 (616)
Q Consensus 175 ~L~~l~~~ 182 (616)
...+|..+
T Consensus 99 ~~ekl~e~ 106 (143)
T PF12718_consen 99 TTEKLREA 106 (143)
T ss_pred HHHHHHHH
Confidence 44444333
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=47.51 E-value=7.2e+02 Score=31.80 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhh
Q 007144 411 SLLKVIESELQGYLSATKSRVGR 433 (616)
Q Consensus 411 ~~L~~l~~eL~~~~~~~~~R~~~ 433 (616)
..++.+.+++....+....++..
T Consensus 732 ~~i~~i~~~i~~~~~~~~~~~~~ 754 (1201)
T PF12128_consen 732 EQIEQIKQEIAAAKQEAKEQLKE 754 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544
No 25
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=46.24 E-value=1.1e+02 Score=28.94 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHh
Q 007144 381 FINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLAL 437 (616)
Q Consensus 381 v~n~Li~Q~Ar~elL~la~e~E~r~~~~~~~~L~~l~~eL~~~~~~~~~R~~~~~~~ 437 (616)
|+++|=.+++|||.=+.+-++|+..|+.--..|+.=...++.-...+..|+.||--.
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999998888888999999999987655
No 26
>PRK10869 recombination and repair protein; Provisional
Probab=45.48 E-value=3.9e+02 Score=31.09 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=48.9
Q ss_pred hhhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhh
Q 007144 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (616)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~ 341 (616)
.+.|+..+.+|+.=|+.+--+++.-..+....-..|.-.......-+ .....+..+...+..+|+..+.+...-+.
T Consensus 301 ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le----~e~~~l~~~l~~~A~~LS~~R~~aA~~l~ 376 (553)
T PRK10869 301 LEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLA----LAVEKHHQQALETAQKLHQSRQRYAKELA 376 (553)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788899999999998777776655544333322221111110000 00124444444555555555555554444
Q ss_pred ccchHHHHHHhchhccccccchhhHHH
Q 007144 342 ETIPDLCWELAQLQDTYILQGDYDLKV 368 (616)
Q Consensus 342 ~~lp~l~ke~AqL~~~pIl~GD~dLqi 368 (616)
..|-..+++ ++|| .+.|.+.+
T Consensus 377 ~~v~~~L~~----L~m~--~a~f~v~~ 397 (553)
T PRK10869 377 QLITESMHE----LSMP--HGKFTIDV 397 (553)
T ss_pred HHHHHHHHH----cCCC--CcEEEEEE
Confidence 444333333 4554 45454444
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.26 E-value=93 Score=26.58 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhh
Q 007144 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT 151 (616)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~ 151 (616)
.++|.|++.-..|..|+++++.....+..+-+-|...-+..+.+.|.++++.
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3667777777777777777777777776666666666666665666555543
No 28
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.24 E-value=5.2e+02 Score=32.15 Aligned_cols=181 Identities=23% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHHHH
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~l~ 180 (616)
+.++..+..+.|..|+.+..-...-..-...+-+..|.++++.. +.+..++-.+...|.=|-
T Consensus 291 e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~ev------------------e~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 291 EAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEV------------------EALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhccCCCCccceeccCChhhhhhcchhHHHHHHHHHhhccCCcccccccccCccccccccCCcccccchhhhh
Q 007144 181 STAQELAHYHSGDEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVRDLEK 260 (616)
Q Consensus 181 ~~v~~L~~y~s~~~~~vflsq~~l~~Yl~qee~~t~~Lt~y~kKqF~~g~~~~v~~e~~s~~~~~~L~D~~~~~~d~~e~ 260 (616)
.++.+ --+..+ ..+.|--||..+--.++-.. .+.|+|++...--+.-+
T Consensus 353 aEmee----kG~~~~---------------------~~ss~qfkqlEqqN~rLKda-------lVrLRDlsA~ek~d~qK 400 (1243)
T KOG0971|consen 353 AEMEE----KGSDGQ---------------------AASSYQFKQLEQQNARLKDA-------LVRLRDLSASEKQDHQK 400 (1243)
T ss_pred HHHHh----cCCCCc---------------------ccchHHHHHHHHHHHHHHHH-------HHHHHhcchHHHHHHHH
Q ss_pred hhhhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhh---ccccccccccchhhhhhHhhHHHHHHhHHHHHH
Q 007144 261 SHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQV---ASDEAYIHLDFHSLKRKHVELVGELSNLHHKEE 337 (616)
Q Consensus 261 ~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~---~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~ 337 (616)
. ..||.+..+-.-.-+++--..+.+...+.+++.-|++|+ -|-+.-|. .|-.+.-.+...+..|+..|.
T Consensus 401 ~----~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~----qLtdknlnlEekVklLeetv~ 472 (1243)
T KOG0971|consen 401 L----QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVE----QLTDKNLNLEEKVKLLEETVG 472 (1243)
T ss_pred H----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH----HHHhhccCHHHHHHHHHHHHH
Q ss_pred Hh
Q 007144 338 KL 339 (616)
Q Consensus 338 ~l 339 (616)
.+
T Consensus 473 dl 474 (1243)
T KOG0971|consen 473 DL 474 (1243)
T ss_pred HH
No 29
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=44.47 E-value=2.1e+02 Score=32.02 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=56.9
Q ss_pred hhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHH
Q 007144 92 QEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNL 170 (616)
Q Consensus 92 ~ed~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~ 170 (616)
-+++| .++||...+++++.|+...+..|......+++...-..+..+.....-....++++.+.+++..+.....
T Consensus 70 r~gVf----qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~ 144 (499)
T COG4372 70 RSGVF----QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTK 144 (499)
T ss_pred Hhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777 8899999999999999999999999999999887777666655554444446667777666655554444
No 30
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=44.17 E-value=2.3e+02 Score=28.77 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=13.3
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHH
Q 007144 163 DGLSARNLQMNDVLGRIASTAQEL 186 (616)
Q Consensus 163 ~~l~~~n~k~n~~L~~l~~~v~~L 186 (616)
.+|.+.+..++..-+.|...+..|
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555565555555555554
No 31
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=42.57 E-value=3.7e+02 Score=27.07 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhh
Q 007144 279 SERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLL 340 (616)
Q Consensus 279 aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~ 340 (616)
+...|-.+.....+..+.+.-+... ++ +-..|+..+..+|..++..++...
T Consensus 113 ~~~~~~~~~~~L~k~~~~~~Kl~~~--~~---------s~~~K~~~~~~ei~~~e~~~~~a~ 163 (216)
T cd07627 113 LWQYWQSAESELSKKKAQLEKLKRQ--GK---------TQQEKLNSLLSELEEAERRASELK 163 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--CC---------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555421 11 234577788888888777766553
No 32
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=41.98 E-value=2.8e+02 Score=32.09 Aligned_cols=71 Identities=28% Similarity=0.226 Sum_probs=46.0
Q ss_pred hhhhhhHhhHHHHHHhHHHHHHHhhhccchHHHHHHhchhccccccchh-------hHHHHhHH-------HHHHhHHHH
Q 007144 316 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDY-------DLKVMRQE-------LYISRQKAF 381 (616)
Q Consensus 316 ~~L~~k~~~l~~el~~Le~~i~~l~~~~lp~l~ke~AqL~~~pIl~GD~-------dLqiaRQ~-------yy~srQ~~v 381 (616)
+.|+.|...+.+|.-.++.+...|+.+++..-.|+. ++-||| +-|+++-. --.+||-+=
T Consensus 162 EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq-------~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee 234 (596)
T KOG4360|consen 162 EALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQ-------QLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEE 234 (596)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667888888888888899999888888886 344444 23333221 013455556
Q ss_pred HHHHHHHHHHHH
Q 007144 382 INHLINQLARHQ 393 (616)
Q Consensus 382 ~n~Li~Q~Ar~e 393 (616)
+.+|+.|++..+
T Consensus 235 ~skLlsql~d~q 246 (596)
T KOG4360|consen 235 NSKLLSQLVDLQ 246 (596)
T ss_pred HHHHHHHHHhhH
Confidence 677777777654
No 33
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.38 E-value=1.8e+02 Score=29.50 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=18.4
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcc
Q 007144 169 NLQMNDVLGRIASTAQELAHYHS 191 (616)
Q Consensus 169 n~k~n~~L~~l~~~v~~L~~y~s 191 (616)
..-+...|++++....++..|+.
T Consensus 56 De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 56 DAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 33677889999999999988865
No 34
>PRK14127 cell division protein GpsB; Provisional
Probab=40.59 E-value=1.3e+02 Score=27.79 Aligned_cols=49 Identities=33% Similarity=0.448 Sum_probs=39.2
Q ss_pred CCCchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007144 88 RRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHAST 139 (616)
Q Consensus 88 ~~~~~ed~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~ 139 (616)
.+++.++| .+=|..+-+++++|.+|+..|+.....+..++..++...+.
T Consensus 21 RGYd~~EV---D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 21 RGYDQDEV---DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47777777 35677777789999999999999999998888888876553
No 35
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.90 E-value=3.4e+02 Score=27.08 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=8.7
Q ss_pred HHHHHHHhhcc
Q 007144 217 ELNQWFSKQLD 227 (616)
Q Consensus 217 ~Lt~y~kKqF~ 227 (616)
.|..|++++|.
T Consensus 160 ~l~~~~~~k~~ 170 (188)
T PF03962_consen 160 SLKSYLKKKFG 170 (188)
T ss_pred HHHHHHHHhcC
Confidence 67788888874
No 36
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.79 E-value=2.5e+02 Score=28.33 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=7.6
Q ss_pred hhhhHHHHHhHHHHHHHHHH
Q 007144 163 DGLSARNLQMNDVLGRIAST 182 (616)
Q Consensus 163 ~~l~~~n~k~n~~L~~l~~~ 182 (616)
....-.|.=+-.-|..+...
T Consensus 139 Qk~~~kn~lLEkKl~~l~~~ 158 (201)
T PF13851_consen 139 QKTGLKNLLLEKKLQALSEQ 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333333
No 37
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.61 E-value=3.7e+02 Score=26.34 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=13.9
Q ss_pred ChhHHHHHHHhcCCCCC
Q 007144 2 SGARLCALLCELGYGGA 18 (616)
Q Consensus 2 ~g~~f~e~Lk~lGyp~a 18 (616)
|--.|+..|.+-|||..
T Consensus 3 DT~~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 3 DTHKFVKRLEAAGFTEE 19 (177)
T ss_pred cHHHHHHHHHHCCCCHH
Confidence 34578999999999986
No 38
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.05 E-value=4.2e+02 Score=27.21 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHhhhccCCCCccceec------cCChhhhhhcchhHHHHHHHHHhhccCC
Q 007144 171 QMNDVLGRIASTAQELAHYHSGDEDGIYLAY------SDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (616)
Q Consensus 171 k~n~~L~~l~~~v~~L~~y~s~~~~~vflsq------~~l~~Yl~qee~~t~~Lt~y~kKqF~~g 229 (616)
.+.+.|.+++..++++..|+. ++++| .||++|+..+-.-.+.. ||.|+..
T Consensus 62 ~~~~~l~kFs~~l~El~~~~~-----~L~~q~~~~l~~pL~~F~k~Dl~~vKe~----kK~FdK~ 117 (215)
T cd07601 62 ILVSTLKQFSKVVDELSTMHS-----TLSSQLADTVLHPISQFMESDLAEIMTL----KELFKAA 117 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHH
Confidence 444588899999999888875 33332 36666665555433332 4666554
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=36.78 E-value=3.1e+02 Score=27.87 Aligned_cols=20 Identities=10% Similarity=0.270 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007144 109 TQAYRDEAAQLQRQLRHLQC 128 (616)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~ 128 (616)
+.+++.++.+++..++.+..
T Consensus 95 lp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44445555555444444433
No 40
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.70 E-value=3.7e+02 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=15.2
Q ss_pred hhhhHHHHHhHHHHHHHHHHHHHHh
Q 007144 163 DGLSARNLQMNDVLGRIASTAQELA 187 (616)
Q Consensus 163 ~~l~~~n~k~n~~L~~l~~~v~~L~ 187 (616)
+.|+..|.++....+.+....++|+
T Consensus 105 ~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 105 ETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3466666666666666666666654
No 41
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.56 E-value=2.2e+02 Score=28.67 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHHHHHhhhccCC-CCccceeccCChhhhhhcchhHHHHHHHHHhhccCC
Q 007144 171 QMNDVLGRIASTAQELAHYHSGD-EDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (616)
Q Consensus 171 k~n~~L~~l~~~v~~L~~y~s~~-~~~vflsq~~l~~Yl~qee~~t~~Lt~y~kKqF~~g 229 (616)
.+...|.+++...+++..|+... .+---+--.||++|+..+-.-.+... |+|+..
T Consensus 58 ~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~k----k~Fdk~ 113 (200)
T cd07603 58 LVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESK----KHFEKI 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHH
Confidence 45678888888888887775411 00011223477887777766555443 555543
No 42
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.17 E-value=2.3e+02 Score=28.71 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHhhhccCC-CCccceeccCChhhhhhcchhHHHHHHHHHhhccCC
Q 007144 171 QMNDVLGRIASTAQELAHYHSGD-EDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (616)
Q Consensus 171 k~n~~L~~l~~~v~~L~~y~s~~-~~~vflsq~~l~~Yl~qee~~t~~Lt~y~kKqF~~g 229 (616)
-+++.|.+++++.+++..|+... .+--.+.--||.+|+..+-.-.+... |+|...
T Consensus 58 ~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~r----K~Fdk~ 113 (200)
T cd07637 58 MISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETK----KQFDKV 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHH
Confidence 47778888999998887775410 01011223477877777665555433 555543
No 43
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.33 E-value=6.2e+02 Score=26.94 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 108 ~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
.+..+..+...+++.+..+..+.++++.....+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~ 72 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQ 72 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555666655555555555555544444
No 44
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.19 E-value=3e+02 Score=29.67 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhh
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGH 157 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~ 157 (616)
.++.++.++.++..++..+++.+..++.++..++.....+......+.+...++.+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666655555555555544443333333333333333
No 45
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=32.53 E-value=1.3e+02 Score=28.14 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHAST 139 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~ 139 (616)
++.+++|++..+.|+..+.+++++-.++..++.+|+.....
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999999988888876433
No 46
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=32.52 E-value=3.2e+02 Score=27.94 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHhhhcc
Q 007144 172 MNDVLGRIASTAQELAHYHS 191 (616)
Q Consensus 172 ~n~~L~~l~~~v~~L~~y~s 191 (616)
+...|++++...+++..|+.
T Consensus 65 i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 65 IAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55778888888888887765
No 47
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.42 E-value=2.9e+02 Score=28.02 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhcc
Q 007144 175 VLGRIASTAQELAHYHS 191 (616)
Q Consensus 175 ~L~~l~~~v~~L~~y~s 191 (616)
.|.+++...+++..|+.
T Consensus 64 ~l~kF~~~l~ei~~~~~ 80 (202)
T cd07606 64 VMTKFTSALREIGSYKE 80 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68889999999888865
No 48
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=31.77 E-value=20 Score=33.73 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCCC
Q 007144 3 GARLCALLCELGYGGADSLDPDSFEWPFQY 32 (616)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~e~fdWlf~~ 32 (616)
..+|+++=..||||++ +.-+||||.-
T Consensus 29 Ar~FFdLQDmLGfDKa----SKTveWLL~k 54 (138)
T PF03634_consen 29 ARKFFDLQDMLGFDKA----SKTVEWLLTK 54 (138)
T ss_pred HHHHHHHHHHhcCCCC----CchHHHHHHh
Confidence 4689999999999999 7889999954
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.59 E-value=5.2e+02 Score=27.06 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.0
Q ss_pred chhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 007144 91 DQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (616)
Q Consensus 91 ~~ed~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l 140 (616)
-+++.......++.+.+.+.+++.++.++++++..++..+.++.......
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555667777777788888888888888877777666665554433
No 50
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.17 E-value=3.8e+02 Score=23.48 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhh
Q 007144 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (616)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~ 142 (616)
++.|+.-|+.+--+...|+..+++|...-..+.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666666665555444443
No 51
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=30.14 E-value=2.9e+02 Score=25.46 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhh
Q 007144 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHL 158 (616)
Q Consensus 104 ~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L 158 (616)
.|..+++.++.....|.+++.-|.+..+.|+.+..+..+....+.+...++-+.+
T Consensus 20 ~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 20 SLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555554444444444443
No 52
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.39 E-value=5.1e+02 Score=24.41 Aligned_cols=16 Identities=25% Similarity=0.177 Sum_probs=11.0
Q ss_pred HHHHhcCCCCCCCCCC
Q 007144 8 ALLCELGYGGADSLDP 23 (616)
Q Consensus 8 e~Lk~lGyp~a~~L~~ 23 (616)
.+|-..|||....+.+
T Consensus 9 ~~L~s~G~~~~~~~~~ 24 (151)
T PF11559_consen 9 QQLLSRGYPSDGLLFD 24 (151)
T ss_pred HHHHHCCCCCCCccCc
Confidence 4677889999744433
No 53
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=28.20 E-value=1.4e+03 Score=29.50 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=59.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHH
Q 007144 98 SEEGLKDIREATQAYRDEAAQLQ-RQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176 (616)
Q Consensus 98 ~ee~le~l~~~~e~L~~e~~~lq-k~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L 176 (616)
.++..+.|++..+.++.+..+++ ++++.++++.+..+.+++......+.+.+.-......|+. +...|..+...+
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~----~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELED----AQKKNDNAADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44566677777888888888888 4778888888888877766665544444444444445544 677888887777
Q ss_pred HHHHHHHHHHh
Q 007144 177 GRIASTAQELA 187 (616)
Q Consensus 177 ~~l~~~v~~L~ 187 (616)
.++..+-++|-
T Consensus 539 ~kv~~~rk~le 549 (1317)
T KOG0612|consen 539 EKVNSLRKQLE 549 (1317)
T ss_pred hhHHHHHHHHH
Confidence 77777777653
No 54
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.92 E-value=4.7e+02 Score=30.07 Aligned_cols=77 Identities=13% Similarity=0.250 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhh-hhhhhhhhhhhhhhhHHHHHhHHHHHHH
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT-STVNGHLSILDDGLSARNLQMNDVLGRI 179 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~-~~~~~~L~~~~~~l~~~n~k~n~~L~~l 179 (616)
.+..|...+.+++++++.+.++-..+..+-+.|......+.+.....+..+ .+...+. +.|...-.++-..|++|
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~----~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEI----EQLKSERQQLQGLIDQL 135 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 455666667777777777777777776666666665555554333333222 3333333 33444444454455555
Q ss_pred HH
Q 007144 180 AS 181 (616)
Q Consensus 180 ~~ 181 (616)
..
T Consensus 136 ~~ 137 (472)
T TIGR03752 136 QR 137 (472)
T ss_pred HH
Confidence 43
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.38 E-value=3.2e+02 Score=26.38 Aligned_cols=56 Identities=30% Similarity=0.314 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhhccch
Q 007144 281 RQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 345 (616)
Q Consensus 281 ~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~~~lp 345 (616)
-++...+.+.+.+.+-|..|...+. .+.|...|..+..++..++.+++.+.+..-|
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t---------~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPT---------NEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 6677777888888888888865554 2578889999999999999999988876533
No 56
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.68 E-value=5.4e+02 Score=28.22 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHhhhHHhhhhh
Q 007144 410 YSLLKVIESELQGYLSATKSRVGRCLALIEAA 441 (616)
Q Consensus 410 ~~~L~~l~~eL~~~~~~~~~R~~~~~~~sq~~ 441 (616)
+...-.+++-|+.+-+ .+|+-++.++...+
T Consensus 216 f~~~~~~vq~lQ~~YQ--~~~Ly~l~AlG~~~ 245 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQ--RGCLYRLRALGKRH 245 (330)
T ss_pred HHHHHHHHHHHHHHHH--HhHHHHHHHhccCc
Confidence 4556667777776554 36777777776544
No 57
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.62 E-value=3.5e+02 Score=26.50 Aligned_cols=30 Identities=13% Similarity=0.379 Sum_probs=14.2
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHh
Q 007144 99 EEGLK-DIREATQAYRDEAAQLQRQLRHLQC 128 (616)
Q Consensus 99 ee~le-~l~~~~e~L~~e~~~lqk~~~~l~~ 128 (616)
++.++ +++..+..+...+..+....+....
T Consensus 97 e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~ 127 (204)
T PF04740_consen 97 EDFLESELKKKLNQLKEQIEDLQDEINSILS 127 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444 5544555555555444444444333
No 58
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=26.59 E-value=1.9e+02 Score=29.73 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhh
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAA 150 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~ 150 (616)
++...++.+++..|+++++..++.+.+.+.+...|..++..++.....+.++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3344555566777777777777777777777777777766666544444333
No 59
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=26.12 E-value=41 Score=30.70 Aligned_cols=50 Identities=24% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 89 RDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 89 ~~~~ed~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
+++.++| ..-|+.+...++.|..++..|+.+...+..++..+......+.
T Consensus 17 GYd~~eV---D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 17 GYDPDEV---DDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp EEEHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred CcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 6777777 3578888888888999999998888888887777766554444
No 60
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=26.09 E-value=7e+02 Score=25.29 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=64.9
Q ss_pred hccchHHHHHHhchhccccccchhhHHHHhHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007144 341 SETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQ----LARHQFLRLACHLEKRNMLAAYSLLKVI 416 (616)
Q Consensus 341 ~~~lp~l~ke~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~v~n~Li~Q----~Ar~elL~la~e~E~r~~~~~~~~L~~l 416 (616)
+.++-++-++....-+.+-...-|.-.++-.+-.+..|+..=..++.| -.||.-+-.=++-|.|+|.+....=..+
T Consensus 56 ~dp~~ALqRD~~~~~~~~~~~~v~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~ 135 (192)
T PF09727_consen 56 NDPFLALQRDSEAAGGEKEEEDVYENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDF 135 (192)
T ss_pred CcHHHHHHhHHHhcCCCCccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 344455555544433333333337777888888888877765555555 5677777777888999999988888888
Q ss_pred HHHHHhhHHHHHHHHhh
Q 007144 417 ESELQGYLSATKSRVGR 433 (616)
Q Consensus 417 ~~eL~~~~~~~~~R~~~ 433 (616)
+.-|++....+.+-++.
T Consensus 136 t~lLEkEReRLkq~lE~ 152 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQ 152 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877765
No 61
>cd08776 DED_Caspase-like_repeat1 Death effector domain, repeat 1, of initator caspase-like proteins. Death Effector Domain (DED), first repeat, found in initator caspase-like proteins, like caspase-8 and -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DI
Probab=26.03 E-value=1e+02 Score=26.32 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=39.3
Q ss_pred chhHHHHHhccCCCCCCCCHHHHhHHHHHHhcCcCCChhhHHHHHhhccccc
Q 007144 35 ARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFS 86 (616)
Q Consensus 35 ~~~FL~Wfc~nV~~~NVLS~~EL~~f~~L~~sGkiLeg~aLd~al~~i~~~~ 86 (616)
...-++|+|..+=|.+.+.. =...|..|+..|++ +-.-|.|.|-.|...+
T Consensus 16 e~~~lkFLC~d~ip~~~le~-~~~lf~~L~e~~~L-~~~fL~ElL~~I~R~D 65 (71)
T cd08776 16 EREVLLFLLNVFIPQPTLAQ-LIGALRALKEEGRL-TLPLLAECLYRAGRRD 65 (71)
T ss_pred HHHHHHHHcccccccccchh-HHHHHHHHHHcCCC-CHHHHHHHHHHhCHHH
Confidence 34568999998888877755 56679999999998 4477889998888643
No 62
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=25.90 E-value=6.9e+02 Score=25.14 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhh---hhHHHHHhHHHHH
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDG---LSARNLQMNDVLG 177 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~---l~~~n~k~n~~L~ 177 (616)
.+.++...++.+..|...|++.-.....-+++++...+.+.+-......+.-.....|...++. ++....+.+..|.
T Consensus 20 ~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~ 99 (194)
T PF15619_consen 20 ELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELL 99 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777888999999988888887777788877777777654444344445555555554443 3333344444555
Q ss_pred HHHHHHHH
Q 007144 178 RIASTAQE 185 (616)
Q Consensus 178 ~l~~~v~~ 185 (616)
++-+.++.
T Consensus 100 k~~~~l~~ 107 (194)
T PF15619_consen 100 KTKDELKH 107 (194)
T ss_pred HHHHHHHH
Confidence 55555544
No 63
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.88 E-value=5.7e+02 Score=24.59 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHH
Q 007144 114 DEAAQLQRQLRHLQCQFDMLTAH 136 (616)
Q Consensus 114 ~e~~~lqk~~~~l~~~~~~L~~~ 136 (616)
+++..|+..+..+...++-|..-
T Consensus 52 ~eie~L~~el~~lt~el~~L~~E 74 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELE 74 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 64
>PRK09039 hypothetical protein; Validated
Probab=25.67 E-value=5.1e+02 Score=28.24 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
.+..+..++...+.+..+...+...|..++..|..+...+.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666666666666655544
No 65
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=24.96 E-value=3.1e+02 Score=23.98 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhh
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAA 150 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~ 150 (616)
++|.|++.-..|..+++.+...+..+..+-..|+..-+.++.+.|.++++
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566555566666666655555555555555555444445444444443
No 66
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=24.85 E-value=19 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHhccC
Q 007144 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (616)
Q Consensus 5 ~f~e~Lk~lGyp~a~~L~~e~fdWlf--~~----~e~~~FL~Wfc~nV 46 (616)
++..+||.||||-+ +++.. ||. .. |..-..|.|+|.-+
T Consensus 96 ev~~~lK~L~YP~~-~isKS---~L~a~gs~hsWP~lL~~L~WLv~l~ 139 (157)
T PF03801_consen 96 EVPFLLKALGYPFA-TISKS---SLQAPGSPHSWPHLLGALHWLVELI 139 (157)
T ss_dssp HHHHHHHHTT-SS-----HH---HHHSTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-ccCHH---HccCCCCcccHHHHHHHHHHHHHHH
Confidence 67889999999996 66643 433 11 44778999999743
No 67
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.50 E-value=5.1e+02 Score=28.06 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007144 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (616)
Q Consensus 102 le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (616)
+-++++++.+..+.+.++++....+...+..++.+
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666555444
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=24.30 E-value=1.2e+03 Score=27.38 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=51.0
Q ss_pred hhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc----ccchhhhhhHhhHHHHHHhHHHHHHH
Q 007144 263 HQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIH----LDFHSLKRKHVELVGELSNLHHKEEK 338 (616)
Q Consensus 263 e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~----~D~~~L~~k~~~l~~el~~Le~~i~~ 338 (616)
++-+.||.-|..=+++==-.+-...|+|..+..=+..++....+.-+.|+ .-+..++.-+.+..++...++.+|.+
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344899898866665566667789999999888888877655433332 22334444456666666666666665
Q ss_pred hhhc
Q 007144 339 LLSE 342 (616)
Q Consensus 339 l~~~ 342 (616)
+..+
T Consensus 118 l~~e 121 (546)
T KOG0977|consen 118 LREE 121 (546)
T ss_pred hHHH
Confidence 5444
No 69
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.93 E-value=4.8e+02 Score=23.67 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 104 ~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
.+....+.|..++..++.++..+...+..+......+.
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777777777777777666655554
No 70
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.68 E-value=5.4e+02 Score=26.18 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=15.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007144 100 EGLKDIREATQAYRDEAAQLQRQLR 124 (616)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~ 124 (616)
+-+..++.++.++++++..+....+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566666677777776666665544
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.45 E-value=6e+02 Score=27.51 Aligned_cols=98 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHHH
Q 007144 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRI 179 (616)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~l 179 (616)
+.+..+++.+.....++..+++....++.++..+...............++..++.+.+++ +..-...--..|..-
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~----~r~~t~~Ei~~Lk~~ 279 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ----CRGFTFKEIEKLKEQ 279 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHH
Q ss_pred HHHHHHHhhh--ccCCCCccceec
Q 007144 180 ASTAQELAHY--HSGDEDGIYLAY 201 (616)
Q Consensus 180 ~~~v~~L~~y--~s~~~~~vflsq 201 (616)
....+++.+. .+..++.+-|.+
T Consensus 280 ~~~Le~l~g~~~~~~~~~~l~~~~ 303 (312)
T smart00787 280 LKLLQSLTGWKITKLSGNTLSMTY 303 (312)
T ss_pred HHHHHHHhCCeeEeccCCeEEEEe
No 72
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=23.28 E-value=2.1e+02 Score=29.65 Aligned_cols=99 Identities=12% Similarity=0.269 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhh--HHHHHhHHHHHHH
Q 007144 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLS--ARNLQMNDVLGRI 179 (616)
Q Consensus 102 le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~--~~n~k~n~~L~~l 179 (616)
.++.+..++.|+.-+..+.+....+..++..|- ....+-++-+.. |+ ..+.-+...|.++
T Consensus 24 F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela--------------~~~~efa~s~~~----L~~~E~~~~ls~~l~~l 85 (234)
T cd07664 24 FEEKQQQFENLDQQLRKLHASVESLVCHRKELS--------------ANTAAFAKSAAM----LGNSEDHTALSRALSQL 85 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH----HHcCcccchHHHHHHHH
Confidence 445555566666655555555555555444443 333333333322 11 2344566677777
Q ss_pred HHHHHHHhhhccCCC-Cccc-eeccCChhhhhhcchhHHHHH
Q 007144 180 ASTAQELAHYHSGDE-DGIY-LAYSDFHPYLLGDSSSMKELN 219 (616)
Q Consensus 180 ~~~v~~L~~y~s~~~-~~vf-lsq~~l~~Yl~qee~~t~~Lt 219 (616)
++...++..-+..+. +..+ |. -||+.|+.-..+....|+
T Consensus 86 aev~~ki~~~~~~qa~~d~~~l~-e~L~eYiR~i~svK~~f~ 126 (234)
T cd07664 86 AEVEEKIDQLHQDQAFADFYLFS-ELLGDYIRLIAAVKGVFD 126 (234)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 776666654443221 1111 22 367777766666655555
No 73
>PRK10722 hypothetical protein; Provisional
Probab=22.96 E-value=5e+02 Score=27.34 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhhHHh-hhhhhccccCCCCCcc
Q 007144 411 SLLKVIESELQGYLSATKSRVGRCLAL-IEAASDVQEQGAVDDR 453 (616)
Q Consensus 411 ~~L~~l~~eL~~~~~~~~~R~~~~~~~-sq~~~~~~~~~~Id~r 453 (616)
--|+.-..+|+..+..+..+++.++|| -|-.+-++..+.+.+.
T Consensus 179 D~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk~~~~~~~~~ 222 (247)
T PRK10722 179 DALRQQQQRLQYQLELTTRKLENLTDIERQLSSRKQAGNFSPDT 222 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCc
Confidence 345555677888999999999999999 5555433344433333
No 74
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.74 E-value=7.9e+02 Score=24.72 Aligned_cols=88 Identities=24% Similarity=0.197 Sum_probs=59.2
Q ss_pred hHhhHHHHHHhHHHHHHHhhhccchHHHHHHhchhccccccchhhHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007144 321 KHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFLRLACH 400 (616)
Q Consensus 321 k~~~l~~el~~Le~~i~~l~~~~lp~l~ke~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~v~n~Li~Q~Ar~elL~la~e 400 (616)
+|-+|..++..+...++.+..+- ++.|+-. .||+..|+.+..+-+-+-=+--...
T Consensus 13 ki~~L~n~l~elq~~l~~l~~EN-----------------------k~Lk~lq--~Rq~kAL~k~e~~e~~Lpqll~~h~ 67 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKEN-----------------------KTLKQLQ--KRQEKALQKYEDTEAELPQLLQRHN 67 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 45677777777777766665552 1222222 2788888888888777776666777
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 007144 401 LEKRNMLAAYSLLKVIESELQGYLSATKSRVGR 433 (616)
Q Consensus 401 ~E~r~~~~~~~~L~~l~~eL~~~~~~~~~R~~~ 433 (616)
-|.|.++.-++-...-...++.........+..
T Consensus 68 eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 68 EEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888777777777777777666666666644
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.71 E-value=4.4e+02 Score=26.10 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhHHHHHhhcccccCC-CCchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhh
Q 007144 73 EDLESAFDSISAFSSR-RDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT 151 (616)
Q Consensus 73 ~aLd~al~~i~~~~~~-~~~~ed~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~ 151 (616)
++|.+++++++..... ..--...-..+..+......+..|+.++..++.....+...+...+.....+.-..-.+....
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhHHHHHh
Q 007144 152 STVNGHLSILDDGLSARNLQM 172 (616)
Q Consensus 152 ~~~~~~L~~~~~~l~~~n~k~ 172 (616)
......+.. +..+|.++
T Consensus 161 ~~~e~k~~~----l~~En~~L 177 (194)
T PF08614_consen 161 NMLEEKLRK----LEEENREL 177 (194)
T ss_dssp HHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHH
No 76
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=22.63 E-value=8.2e+02 Score=24.86 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 007144 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTA 135 (616)
Q Consensus 97 ~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~ 135 (616)
..+++-|.|+.++.++++||.+|..-+...+.+..+|..
T Consensus 41 LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKR 79 (208)
T KOG4010|consen 41 LSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKR 79 (208)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999888876665443
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.07 E-value=1.3e+03 Score=27.11 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhh
Q 007144 279 SERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLL 340 (616)
Q Consensus 279 aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~ 340 (616)
.+-+......+...+..-+..+..+...-.. ..++..+..+...+..++..++.++..+.
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~--~e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIPS--EEQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666667777666643210 12345555555555555555555544443
No 78
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=21.19 E-value=4.2e+02 Score=25.83 Aligned_cols=33 Identities=6% Similarity=0.177 Sum_probs=18.2
Q ss_pred hhhhHHHHhhhhhhhhhhh--hhhhhhhHHHHHhH
Q 007144 141 MQGRRARVAATSTVNGHLS--ILDDGLSARNLQMN 173 (616)
Q Consensus 141 ~~~~~~l~~~~~~~~~~L~--~~~~~l~~~n~k~n 173 (616)
+.....++.+|.++...+- .-++.|+..-.+++
T Consensus 69 s~k~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~ 103 (153)
T PF15175_consen 69 SSKKDQLITKCNEIESEIICHKQEDILNGKENEIK 103 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhhcccccchH
Confidence 4445566777766655544 33455555444444
No 79
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=21.18 E-value=2.2e+03 Score=29.33 Aligned_cols=147 Identities=18% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHhhhccchHHHHHHhchhcccc-ccchh-hHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007144 336 EEKLLSETIPDLCWELAQLQDTYI-LQGDY-DLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLL 413 (616)
Q Consensus 336 i~~l~~~~lp~l~ke~AqL~~~pI-l~GD~-dLqiaRQ~yy~srQ~~v~n~Li~Q~Ar~elL~la~e~E~r~~~~~~~~L 413 (616)
++.+.+ .+|+--+.-+.....+= +.||. +|.+ .-+.--.+...+..+|-+..+-..=++.-++-..+...+++.++
T Consensus 1585 i~~~q~-~Le~E~r~k~e~~r~KKkle~di~elE~-~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~ 1662 (1930)
T KOG0161|consen 1585 LESLQA-ELEAETRSKSEALRSKKKLEGDINELEI-QLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQL 1662 (1930)
T ss_pred HHHHHH-hhhHHHHHHHHHHhhhhhhhcchHHHHH-HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 45654444444333332 55665 3333 22333344555666666666666667777888888888888888
Q ss_pred HHHHHHHHhhHHHHHHHHhhhHHhhhhhhccccCCCCCcchhhHHHHHHHhcCCCCcccccccccChhhHHHHHHHHHHH
Q 007144 414 KVIESELQGYLSATKSRVGRCLALIEAASDVQEQGAVDDRDTFLHGVRDLLSIHSNAQAGLSTYVSAPGIVQQISGLRAD 493 (616)
Q Consensus 414 ~~l~~eL~~~~~~~~~R~~~~~~~sq~~~~~~~~~~Id~rD~~~~rL~~lL~~~~~~q~~f~ty~s~~~L~~~~~~L~~d 493 (616)
...+..+..-.+.+.+.-..+..++-+- +..=...|.+.-++.....+. ..+...-++|..+
T Consensus 1663 ~~aerr~~~l~~E~eeL~~~l~~~~Rar-----r~aE~e~~E~~e~i~~~~~~~-------------s~l~~~KrklE~~ 1724 (1930)
T KOG0161|consen 1663 AEAERRLAALQAELEELREKLEALERAR-----RQAELELEELAERVNELNAQN-------------SSLTAEKRKLEAE 1724 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHhhcc-------------cchhhHHHHHHHH
Confidence 8777777666666555444332231111 111123345666665444432 2233344555556
Q ss_pred HHHHHHhhh
Q 007144 494 LTALQSDLE 502 (616)
Q Consensus 494 l~~lq~~L~ 502 (616)
+..+++.|+
T Consensus 1725 i~~l~~ele 1733 (1930)
T KOG0161|consen 1725 IAQLQSELE 1733 (1930)
T ss_pred HHHHHHHHH
Confidence 665555555
No 80
>PRK09039 hypothetical protein; Validated
Probab=21.16 E-value=3.9e+02 Score=29.13 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred HHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhhc
Q 007144 267 SELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSE 342 (616)
Q Consensus 267 ~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~~ 342 (616)
.+|...+..|.-++.+++.++.+.+.+++-|..+..... ....+..+...+|..|+..++..+-+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~-----------~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALD-----------ASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888988999998888888877776666654442 33444455666666666666555533
No 81
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.13 E-value=4.6e+02 Score=27.87 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
.+..+..+....+.+++.|..+...+..+.+.++.....+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~ 79 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK 79 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666777777777777777777777777777665555
No 82
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.95 E-value=5.6e+02 Score=26.76 Aligned_cols=75 Identities=20% Similarity=0.345 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhHHHHHHHHHHH
Q 007144 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTA 183 (616)
Q Consensus 104 ~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n~~L~~l~~~v 183 (616)
++++.++.++.-++++++.+..+..++..|+.... +.+..|+. |..+|.+++..+.++-..+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e--------------e~~erlk~----le~E~s~LeE~~~~l~~ev 193 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYE--------------EVQERLKR----LEVENSRLEEMLKKLPGEV 193 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH----HHHHHHHHHHHHHhchhHH
Confidence 55555666666666666666666655555554333 33344544 7788888888888888888
Q ss_pred HHHhhhccCCCCc
Q 007144 184 QELAHYHSGDEDG 196 (616)
Q Consensus 184 ~~L~~y~s~~~~~ 196 (616)
.+|-.-.+...||
T Consensus 194 ~~L~~r~~ELe~~ 206 (290)
T COG4026 194 YDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHhccc
Confidence 8775544444444
No 83
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.89 E-value=1.4e+03 Score=26.92 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=48.4
Q ss_pred HHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHHhhhccchHH
Q 007144 268 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDL 347 (616)
Q Consensus 268 EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~l~~~~lp~l 347 (616)
++..++.-......++-..+++.....+.+..+.....+.-......-..|..++..+..++...+.++..+.+..+|-+
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~ 296 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLL 296 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHh
Confidence 33344444444444555555555555555555554332111111111347888888999999999999999998887775
Q ss_pred HHH
Q 007144 348 CWE 350 (616)
Q Consensus 348 ~ke 350 (616)
+-.
T Consensus 297 l~~ 299 (650)
T TIGR03185 297 LIP 299 (650)
T ss_pred hhH
Confidence 533
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.81 E-value=1.1e+03 Score=25.44 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=49.8
Q ss_pred hhhhhhHhhHHHHHHhHHHHHHHhhhccchHHHHHHhchhccccccchhhHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007144 316 HSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINHLINQLARHQFL 395 (616)
Q Consensus 316 ~~L~~k~~~l~~el~~Le~~i~~l~~~~lp~l~ke~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~v~n~Li~Q~Ar~elL 395 (616)
..|..+|++...-+..++.++ ... -|++.+++.. +-.+ +...+. .-|.++
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~---~~~-nPpLf~EY~~----------------------a~~d-~r~~m~---~q~~~v 127 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEET---YES-NPPLFREYYT----------------------ADPD-MRLLMD---NQFQLV 127 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhc-CCHHHHHHHc----------------------CCHH-HHHHHH---HHHHHH
Confidence 467777888888877777663 233 4788887633 2111 111111 124667
Q ss_pred HHHHHHHHHhHHHHHH--HHHHHHHHHHhhHHHHHHHHhh
Q 007144 396 RLACHLEKRNMLAAYS--LLKVIESELQGYLSATKSRVGR 433 (616)
Q Consensus 396 ~la~e~E~r~~~~~~~--~L~~l~~eL~~~~~~~~~R~~~ 433 (616)
+--+.++-++.|--.| +++.+...|......+..=...
T Consensus 128 K~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~ 167 (325)
T PF08317_consen 128 KTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAK 167 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776665433 4556666555555555544433
No 85
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.49 E-value=6.2e+02 Score=22.65 Aligned_cols=38 Identities=24% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 104 DIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 104 ~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
++....+.|..++..++.+...+...+++++.....+.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666555444444
No 86
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=20.13 E-value=91 Score=24.52 Aligned_cols=19 Identities=42% Similarity=0.576 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHhhhcc
Q 007144 597 ERLRSQVRELTARVRALQV 615 (616)
Q Consensus 597 ~~L~~~V~~Le~~~~a~~~ 615 (616)
+-|+.+|+.|+.|++.+|.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999874
Done!