Query 007144
Match_columns 616
No_of_seqs 83 out of 85
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8t_A Beclin-1; autophagy, AT 77.3 19 0.00065 30.9 10.2 86 94-179 5-90 (96)
2 2ve7_A Kinetochore protein HEC 66.7 6 0.0002 41.0 5.3 37 5-46 72-114 (315)
3 3i5g_C Myosin catalytic light 53.9 12 0.00041 33.8 4.4 77 3-83 30-115 (159)
4 3mq9_A Bone marrow stromal ant 53.3 80 0.0027 33.5 11.5 70 116-186 399-469 (471)
5 3caz_A BAR protein; thermo-aci 46.1 96 0.0033 30.0 9.3 51 164-214 168-222 (294)
6 3u1c_A Tropomyosin alpha-1 cha 44.0 92 0.0032 26.7 8.2 42 99-140 29-70 (101)
7 3u59_A Tropomyosin beta chain; 40.5 1.1E+02 0.0038 26.0 8.2 43 99-141 29-71 (101)
8 2jee_A YIIU; FTSZ, septum, coi 38.4 1.8E+02 0.006 24.4 9.5 33 109-141 8-40 (81)
9 3bas_A Myosin heavy chain, str 36.6 1.6E+02 0.0054 24.6 8.4 36 101-136 22-57 (89)
10 1i84_S Smooth muscle myosin he 36.0 1.2E+02 0.004 36.7 10.3 15 419-433 1148-1162(1184)
11 3oja_B Anopheles plasmodium-re 33.8 1.5E+02 0.0051 32.2 10.0 16 29-44 391-406 (597)
12 3i5g_B Myosin regulatory light 33.7 14 0.00046 33.2 1.3 76 2-83 34-115 (153)
13 2p22_A Suppressor protein STP2 33.5 2.2E+02 0.0077 26.9 9.7 31 105-135 54-84 (174)
14 2w83_C C-JUN-amino-terminal ki 29.9 1.9E+02 0.0064 24.0 7.3 47 100-146 9-55 (77)
15 2jee_A YIIU; FTSZ, septum, coi 29.0 1.9E+02 0.0065 24.2 7.3 48 101-148 28-75 (81)
16 2ovk_C Myosin catalytic light 26.8 39 0.0013 29.3 3.1 77 3-83 30-115 (159)
17 2yy0_A C-MYC-binding protein; 25.7 1.2E+02 0.004 23.3 5.1 26 109-134 21-46 (53)
18 1ic2_A Tropomyosin alpha chain 24.2 2.4E+02 0.0083 22.9 7.3 57 98-157 25-81 (81)
19 2dfs_A Myosin-5A; myosin-V, in 24.0 3.8E+02 0.013 32.2 11.7 18 119-136 982-999 (1080)
20 2yy0_A C-MYC-binding protein; 23.7 1.2E+02 0.004 23.3 4.8 32 101-132 20-51 (53)
21 3iv1_A Tumor susceptibility ge 23.3 2.6E+02 0.0088 23.2 7.1 41 105-145 16-56 (78)
22 3tnu_B Keratin, type II cytosk 23.1 2.7E+02 0.0093 24.5 8.0 89 246-342 16-104 (129)
23 3vmx_A Voltage-gated hydrogen 23.0 1.6E+02 0.0055 22.3 5.2 37 403-439 6-42 (48)
24 2mys_C Myosin; muscle protein, 22.7 61 0.0021 27.2 3.5 76 3-82 27-114 (149)
25 1wdc_B Scallop myosin; calcium 22.3 35 0.0012 29.4 1.9 75 2-82 36-116 (156)
26 3vkg_A Dynein heavy chain, cyt 22.1 1.4E+03 0.049 30.9 17.2 174 116-338 1898-2074(3245)
27 2l5g_A GPS2 protein, G protein 21.5 1.5E+02 0.0051 21.3 4.5 29 100-128 8-36 (38)
28 3hnw_A Uncharacterized protein 21.2 3.4E+02 0.012 24.5 8.3 30 107-136 75-104 (138)
29 3mq7_A Bone marrow stromal ant 21.1 4.4E+02 0.015 23.5 8.7 54 133-187 44-98 (121)
No 1
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.28 E-value=19 Score=30.92 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.1
Q ss_pred hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhhhhhhhhhhhHHHHHhH
Q 007144 94 AVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMN 173 (616)
Q Consensus 94 d~~~~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~L~~~~~~l~~~n~k~n 173 (616)
++.+.+..+.+++.+-..|-.++..+++....+...+..++..+..+.......-..-.....++-..++.+.+.+.++.
T Consensus 5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777888888888887777777777776666654444444445555556666666666666666
Q ss_pred HHHHHH
Q 007144 174 DVLGRI 179 (616)
Q Consensus 174 ~~L~~l 179 (616)
....+|
T Consensus 85 ~~~~qL 90 (96)
T 3q8t_A 85 YAQMQL 90 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 2
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=66.72 E-value=6 Score=40.97 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHhccC
Q 007144 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (616)
Q Consensus 5 ~f~e~Lk~lGyp~a~~L~~e~fdWlf--~~----~e~~~FL~Wfc~nV 46 (616)
++..+||.||||-. ++.. ||. .. |.+-..|.|+|.-+
T Consensus 72 ev~~~lK~L~YP~~--isKS---~L~a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 72 EVPRIFKDLGYPFA--LSKS---SMYTVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp HHHHHHHHTTCSSC--CCHH---HHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCce--eCHH---HhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 57789999999986 5432 443 22 33778899998755
No 3
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=53.89 E-value=12 Score=33.85 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=55.8
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCC-------CCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhcCc-CCChh
Q 007144 3 GARLCALLCELGYGGADSLDPDSFEWPFQ-------YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGE 73 (616)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~e~fdWlf~-------~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~ 73 (616)
-.+|...|+.+|+.-+ .+.+.-++. .-++..|+.++.......+.-+.+++ .+|..+-..|. .++-+
T Consensus 30 ~~El~~~lr~lG~~~t----~~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~ 105 (159)
T 3i5g_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHH
Confidence 4689999999998654 122222221 12478899999887776666777776 47999988888 78999
Q ss_pred hHHHHHhhcc
Q 007144 74 DLESAFDSIS 83 (616)
Q Consensus 74 aLd~al~~i~ 83 (616)
+|-.++.++.
T Consensus 106 el~~~l~~~g 115 (159)
T 3i5g_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 9999988765
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.27 E-value=80 Score=33.47 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhh-hhhhhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHH
Q 007144 116 AAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT-STVNGHLSILDDGLSARNLQMNDVLGRIASTAQEL 186 (616)
Q Consensus 116 ~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~-~~~~~~L~~~~~~l~~~n~k~n~~L~~l~~~v~~L 186 (616)
...||+++...+..+-.++.+|++-++.+-.+-+.- .++...++++++ +....+++|..|+.....|+++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEE-LEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 344777777777777788888888887666554444 223333333333 7888899999999998888775
No 5
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=46.06 E-value=96 Score=30.05 Aligned_cols=51 Identities=20% Similarity=0.117 Sum_probs=24.7
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHHhhh-ccCCC---CccceeccCChhhhhhcchh
Q 007144 164 GLSARNLQMNDVLGRIASTAQELAHY-HSGDE---DGIYLAYSDFHPYLLGDSSS 214 (616)
Q Consensus 164 ~l~~~n~k~n~~L~~l~~~v~~L~~y-~s~~~---~~vflsq~~l~~Yl~qee~~ 214 (616)
.|+....+||++++.--.-..+-++- -|.+- ..+=-.--|+-+|+.++++-
T Consensus 168 vcsDiInkMnkll~n~~riineaasavwstqlqyakaleaaanpivpylqqeeqe 222 (294)
T 3caz_A 168 VCADLIQKMETVWKKHVSIFAEAASAVWSTQLQYAKALEAAANPIVPYLQQEEQE 222 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGGCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhhhh
Confidence 36667778888887655544443221 01000 00112234677888887764
No 6
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=43.99 E-value=92 Score=26.71 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=31.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l 140 (616)
+..+++.+......+.++..|++....+...++.++......
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667788888888888888888888888776654433
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.53 E-value=1.1e+02 Score=26.03 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 99 ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
+..+++.+......+.++..+++....+...++.++.......
T Consensus 29 e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 29 EADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667778888888888888888888887776554443
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=38.38 E-value=1.8e+02 Score=24.39 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 007144 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (616)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~ 141 (616)
+++|+.-|+.+-.+...++-.++.|...-+.+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 9
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.63 E-value=1.6e+02 Score=24.60 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (616)
.++.+++.+++-+....+++.....+....|.|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555544
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.99 E-value=1.2e+02 Score=36.71 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHhh
Q 007144 419 ELQGYLSATKSRVGR 433 (616)
Q Consensus 419 eL~~~~~~~~~R~~~ 433 (616)
.|......+..+++.
T Consensus 1148 ~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1148 DLSEELEALKTELED 1162 (1184)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455555544
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.83 E-value=1.5e+02 Score=32.17 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=9.0
Q ss_pred cCCCCCchhHHHHHhc
Q 007144 29 PFQYDDARPILDWICS 44 (616)
Q Consensus 29 lf~~~e~~~FL~Wfc~ 44 (616)
+|+.+...|++.++..
T Consensus 391 ~cc~~~~~~~~~~~~~ 406 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQ 406 (597)
T ss_dssp EEEECCSSHHHHHHHH
T ss_pred ccccCCCccchhHHHH
Confidence 3444566777665443
No 12
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=33.72 E-value=14 Score=33.24 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=51.4
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhcCc-CCChhhH
Q 007144 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (616)
Q Consensus 2 ~g~~f~e~Lk~lGyp~a~~L~~e~fdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~aL 75 (616)
+-.+|...|+.+|++.+.. .+.-++ ..-++..|+.+++..+...+ +++++ .+|..+-..|. .++.++|
T Consensus 34 ~~~El~~~l~~lg~~~~~~----~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~--~~~~l~~aF~~fD~d~~G~I~~~el 107 (153)
T 3i5g_B 34 GMEDLKDMFSSLGRVPPDD----ELNAMLKECPGQLNFTAFLTLFGEKVSGTD--PEDALRNAFSMFDEDGQGFIPEDYL 107 (153)
T ss_dssp CHHHHHHHHHHTTSCCCHH----HHHHHHHTSSSCCCSHHHHHTTTTTTTTCC--CHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred cHHHHHHHHHHcCCCccHH----HHHHHHHhccCCccHHHHHHHHHhhhcccc--cHHHHHHHHhccccCCCCeEeHHHH
Confidence 3468889999999887632 222222 23457888888887766543 44554 47888877777 7888888
Q ss_pred HHHHhhcc
Q 007144 76 ESAFDSIS 83 (616)
Q Consensus 76 d~al~~i~ 83 (616)
-.++.++.
T Consensus 108 ~~~l~~~g 115 (153)
T 3i5g_B 108 KDLLENMG 115 (153)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHcC
Confidence 88887654
No 13
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.50 E-value=2.2e+02 Score=26.92 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 007144 105 IREATQAYRDEAAQLQRQLRHLQCQFDMLTA 135 (616)
Q Consensus 105 l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~ 135 (616)
+..+..+++.++..+++.+..+....+.|+.
T Consensus 54 l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 54 IAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655555555
No 14
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.91 E-value=1.9e+02 Score=23.98 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHH
Q 007144 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRA 146 (616)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~ 146 (616)
.++|.|-.+-..|-.-...+.-.++.|+.+.++|++.-..+......
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35566655555555556666666677788888888877777755443
No 15
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.95 E-value=1.9e+02 Score=24.18 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHH
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARV 148 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~ 148 (616)
+++.|+..-..|..+.+.++.....+..+.+.|...-+....+.+.++
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444444444444444443333333
No 16
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=26.81 E-value=39 Score=29.27 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=47.5
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccCCC-------CCchhHHHHHhccCCCCCCCCHHHHh-HHHHHHhcCc-CCChh
Q 007144 3 GARLCALLCELGYGGADSLDPDSFEWPFQY-------DDARPILDWICSSLRPSNVLSLSELS-QFEQFLQEEK-LLEGE 73 (616)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~e~fdWlf~~-------~e~~~FL~Wfc~nV~~~NVLS~~EL~-~f~~L~~sGk-iLeg~ 73 (616)
-.+|...|+.+|++.+ .+.+..+|.. -++..|+.++.........-..+++. +|..+-..|. .++.+
T Consensus 30 ~~el~~~l~~lg~~~~----~~~~~~l~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 105 (159)
T 2ovk_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHHTTCCSSTTSCEEEHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHH
Confidence 4689999999998654 3445555521 23677888875433333333444443 5666666666 67777
Q ss_pred hHHHHHhhcc
Q 007144 74 DLESAFDSIS 83 (616)
Q Consensus 74 aLd~al~~i~ 83 (616)
++-.++..+.
T Consensus 106 El~~~l~~~g 115 (159)
T 2ovk_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 7777776654
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.71 E-value=1.2e+02 Score=23.29 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007144 109 TQAYRDEAAQLQRQLRHLQCQFDMLT 134 (616)
Q Consensus 109 ~e~L~~e~~~lqk~~~~l~~~~~~L~ 134 (616)
.++|+.|..+|+...+.|..++.+|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554444443
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.17 E-value=2.4e+02 Score=22.92 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhhhhhhhh
Q 007144 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGH 157 (616)
Q Consensus 98 ~ee~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~~~~~~~ 157 (616)
++..+++.+......+.++..+++....+...+++.+....... ..+..++..+..+
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~---~kLeeaek~~~~~ 81 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ---EKLELADKKATDC 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcC
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.00 E-value=3.8e+02 Score=32.19 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhhhHHH
Q 007144 119 LQRQLRHLQCQFDMLTAH 136 (616)
Q Consensus 119 lqk~~~~l~~~~~~L~~~ 136 (616)
++.....++.+..++...
T Consensus 982 ~~~~v~~L~~e~~~l~~~ 999 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKE 999 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.73 E-value=1.2e+02 Score=23.28 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007144 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDM 132 (616)
Q Consensus 101 ~le~l~~~~e~L~~e~~~lqk~~~~l~~~~~~ 132 (616)
.+|.|+.+...|+..+..|+++..-+..++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888888888888888887777776654
No 21
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.27 E-value=2.6e+02 Score=23.20 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhhH
Q 007144 105 IREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRR 145 (616)
Q Consensus 105 l~~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~as~l~~~~~ 145 (616)
+++.......|++.+.++.+-|..=-.+|+.+.+.+.....
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~ 56 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVA 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44557778888888888888887777777777776664443
No 22
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.14 E-value=2.7e+02 Score=24.52 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred ccCCcccccchhhhhhhhhhHHHHHHhHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhH
Q 007144 246 SLGDESNILVRDLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVEL 325 (616)
Q Consensus 246 ~L~D~~~~~~d~~e~~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l 325 (616)
.+.+++......++....-+. |+..++...-.=+.++-..+..++++.+.|.-+....... ...+..+|..+
T Consensus 16 K~eel~~~~~~~~~~l~~~k~-Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~-------l~~~q~~i~~l 87 (129)
T 3tnu_B 16 KYEELQQTAGRHGDDLRNTKH-EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA-------LKDARNKLAEL 87 (129)
T ss_dssp ------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHhhhc
Q 007144 326 VGELSNLHHKEEKLLSE 342 (616)
Q Consensus 326 ~~el~~Le~~i~~l~~~ 342 (616)
..++..++.+++..+.+
T Consensus 88 E~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 88 EEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH
No 23
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.00 E-value=1.6e+02 Score=22.28 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhHHhhh
Q 007144 403 KRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIE 439 (616)
Q Consensus 403 ~r~~~~~~~~L~~l~~eL~~~~~~~~~R~~~~~~~sq 439 (616)
++++...+..|..=+++|+..++...++++++..+..
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 4678888889999999999999999999999888743
No 24
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.73 E-value=61 Score=27.23 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=38.3
Q ss_pred hhHHHHHHHhcCCCCCCCCCCCCCcccC----------CCCCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhcCc-CC
Q 007144 3 GARLCALLCELGYGGADSLDPDSFEWPF----------QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LL 70 (616)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~e~fdWlf----------~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iL 70 (616)
-.+|...|+.+|++.+ .+.+..+| ..-++..|+.+++......+--+..++ ..|..+-..|. .+
T Consensus 27 ~~el~~~l~~~~~~~~----~~~~~~l~~~~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i 102 (149)
T 2mys_C 27 ASQVGDIARALGQNPT----NAEINKILGNPSKEEMNAAAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTV 102 (149)
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHhhhccccCCcCcHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCceE
Confidence 4577788888877644 33344444 113455666665553111111122222 24555555555 56
Q ss_pred ChhhHHHHHhhc
Q 007144 71 EGEDLESAFDSI 82 (616)
Q Consensus 71 eg~aLd~al~~i 82 (616)
+.+++-.++..+
T Consensus 103 ~~~el~~~l~~~ 114 (149)
T 2mys_C 103 MGAELRHVLATL 114 (149)
T ss_pred cHHHHHHHHHHh
Confidence 666666666554
No 25
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=22.32 E-value=35 Score=29.43 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=43.3
Q ss_pred ChhHHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHhccCCCCCCCCHHHH-hHHHHHHhcCc-CCChhhH
Q 007144 2 SGARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (616)
Q Consensus 2 ~g~~f~e~Lk~lGyp~a~~L~~e~fdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~EL-~~f~~L~~sGk-iLeg~aL 75 (616)
+-.+|...|+.+|++.+ .+.+..+|.+ -++..|+.++...+...+ +.+++ .+|..+-..|. .++.+++
T Consensus 36 ~~~el~~~l~~~g~~~~----~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~el 109 (156)
T 1wdc_B 36 SKEDIKAISEQLGRAPD----DKELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 109 (156)
T ss_dssp CHHHHHHHHHHHSSCCC----HHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred cHHHHHHHHHHhCCCCC----HHHHHHHHHhCCCcCcHHHHHHHHHHHhcCCC--hHHHHHHHHHHHCcCCCCccCHHHH
Confidence 34688888999887654 4445555532 346777777765443221 23333 24555555555 5666666
Q ss_pred HHHHhhc
Q 007144 76 ESAFDSI 82 (616)
Q Consensus 76 d~al~~i 82 (616)
-.++..+
T Consensus 110 ~~~l~~~ 116 (156)
T 1wdc_B 110 KDLLENM 116 (156)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 6666554
No 26
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=22.13 E-value=1.4e+03 Score=30.88 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhhhhHHHHhhh---hhhhhhhhhhhhhhhHHHHHhHHHHHHHHHHHHHHhhhccC
Q 007144 116 AAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT---STVNGHLSILDDGLSARNLQMNDVLGRIASTAQELAHYHSG 192 (616)
Q Consensus 116 ~~~lqk~~~~l~~~~~~L~~~as~l~~~~~~l~~~~---~~~~~~L~~~~~~l~~~n~k~n~~L~~l~~~v~~L~~y~s~ 192 (616)
+.-+.-+++.+..++.++......+..|..++..+. +...+.|.+.+..|...+.+.+..|.++..+.++..
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae----- 1972 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAE----- 1972 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCccceeccCChhhhhhcchhHHHHHHHHHhhccCCcccccccccCccccccccCCcccccchhhhhhhhhhHHHHHHh
Q 007144 193 DEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVRDLEKSHHQRVSELQRL 272 (616)
Q Consensus 193 ~~~~vflsq~~l~~Yl~qee~~t~~Lt~y~kKqF~~g~~~~v~~e~~s~~~~~~L~D~~~~~~d~~e~~~e~r~~EL~RL 272 (616)
....-..+...-+.++ ...+. +-+..|. .|+....+-.+-+. +++.+
T Consensus 1973 -----------------~~k~~v~~~~~~~~~~-----~~ei~-~~k~~~e----~dL~~A~Pa~Pkr~------~l~~a 2019 (3245)
T 3vkg_A 1973 -----------------IKQKDARELQVQLDVR-----NKEIA-VQKVKAY----ADLEKAEPTGPLRE------EVEQL 2019 (3245)
T ss_dssp -----------------HHHHHHHHHHHHHHHH-----HHHHH-HHHHHHH----HCC-------CHHH------HHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHH-----HHHHH-HHHHHHH----HHHhhcCCCChHHH------HHHHH
Q ss_pred HHhHhhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhHhhHHHHHHhHHHHHHH
Q 007144 273 RSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEK 338 (616)
Q Consensus 273 q~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~D~~~L~~k~~~l~~el~~Le~~i~~ 338 (616)
+..+..++.++-.++++....++.|..|+.+. ...-.+-..++.++...+.+++.
T Consensus 2020 e~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~-----------~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2020 ENAANELKLKQDEIVATITALEKSIATYKEEY-----------ATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
No 27
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.53 E-value=1.5e+02 Score=21.30 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007144 100 EGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (616)
Q Consensus 100 e~le~l~~~~e~L~~e~~~lqk~~~~l~~ 128 (616)
+.+++.++.+..++..++.|++-++.+=.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888889999999999888876544
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.19 E-value=3.4e+02 Score=24.54 Aligned_cols=30 Identities=3% Similarity=0.092 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007144 107 EATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (616)
Q Consensus 107 ~~~e~L~~e~~~lqk~~~~l~~~~~~L~~~ 136 (616)
...+.|+.++.++.+....+.+++..++..
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.14 E-value=4.4e+02 Score=23.46 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=32.0
Q ss_pred hHHHHHHhhhhhHHHHhhhhhhhhh-hhhhhhhhhHHHHHhHHHHHHHHHHHHHHh
Q 007144 133 LTAHASTLMQGRRARVAATSTVNGH-LSILDDGLSARNLQMNDVLGRIASTAQELA 187 (616)
Q Consensus 133 L~~~as~l~~~~~~l~~~~~~~~~~-L~~~~~~l~~~n~k~n~~L~~l~~~v~~L~ 187 (616)
-+.+|++-++..-.+.+.-+..+.+ .+.+ ..|..++..+|-.|+.....+..|-
T Consensus 44 ~eaQAaTCNqTV~tL~~SL~~ekaq~q~~v-qeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 44 VEAQAATANHTVMALMASLDAEKAQGQKKV-EELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444322222 2222 2388888888988888888888773
Done!