Query 007146
Match_columns 616
No_of_seqs 102 out of 114
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 19:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1991 Nuclear transport rece 100.0 4.6E-71 1E-75 623.0 30.2 498 2-581 441-968 (1010)
2 COG5656 SXM1 Importin, protein 100.0 4.3E-36 9.4E-41 331.8 25.2 412 8-490 445-877 (970)
3 KOG1993 Nuclear transport rece 99.2 7.2E-09 1.6E-13 118.0 25.3 376 21-492 484-889 (978)
4 PF03378 CAS_CSE1: CAS/CSE pro 99.1 5.2E-10 1.1E-14 122.8 14.9 323 98-493 19-352 (435)
5 KOG2274 Predicted importin 9 [ 99.1 3.3E-08 7.1E-13 114.0 29.0 344 34-465 461-838 (1005)
6 KOG1832 HIV-1 Vpr-binding prot 97.3 7E-05 1.5E-09 86.9 1.3 32 528-559 1458-1489(1516)
7 PF13513 HEAT_EZ: HEAT-like re 96.9 0.00061 1.3E-08 53.4 2.5 52 37-94 1-55 (55)
8 PF04931 DNA_pol_phi: DNA poly 96.6 0.0025 5.4E-08 75.4 5.4 58 34-97 105-167 (784)
9 KOG1991 Nuclear transport rece 96.5 0.41 8.8E-06 57.5 22.8 161 38-218 433-600 (1010)
10 PF04931 DNA_pol_phi: DNA poly 96.5 0.0022 4.7E-08 75.8 4.5 19 397-415 537-555 (784)
11 PF10446 DUF2457: Protein of u 96.5 0.0018 3.8E-08 71.2 2.9 19 474-493 28-46 (458)
12 PF08506 Cse1: Cse1; InterPro 96.4 0.0028 6.1E-08 68.9 4.0 68 18-91 302-370 (370)
13 PF01602 Adaptin_N: Adaptin N 95.8 0.03 6.4E-07 61.8 8.3 146 3-170 63-211 (526)
14 KOG1992 Nuclear export recepto 95.7 1.8 3.9E-05 51.6 22.5 394 21-494 456-875 (960)
15 PF10508 Proteasom_PSMB: Prote 95.6 0.93 2E-05 51.3 19.5 314 34-409 88-422 (503)
16 KOG2023 Nuclear transport rece 95.5 0.068 1.5E-06 61.8 10.0 122 33-169 444-572 (885)
17 KOG2171 Karyopherin (importin) 95.3 0.6 1.3E-05 56.9 17.2 140 33-185 47-191 (1075)
18 KOG2171 Karyopherin (importin) 94.7 0.076 1.6E-06 64.2 7.6 124 22-153 390-523 (1075)
19 PF10363 DUF2435: Protein of u 94.6 0.1 2.2E-06 46.3 6.6 77 60-143 2-81 (92)
20 PF10446 DUF2457: Protein of u 93.8 0.028 6.1E-07 62.0 1.7 7 447-453 22-28 (458)
21 KOG1241 Karyopherin (importin) 92.8 4.7 0.0001 47.9 17.3 103 34-143 417-539 (859)
22 PF13646 HEAT_2: HEAT repeats; 92.8 0.22 4.7E-06 41.6 5.2 66 33-119 10-75 (88)
23 KOG1832 HIV-1 Vpr-binding prot 92.7 0.074 1.6E-06 63.0 2.9 24 24-52 749-773 (1516)
24 PRK09687 putative lyase; Provi 92.6 2 4.3E-05 45.2 13.0 54 33-94 64-118 (280)
25 PF12717 Cnd1: non-SMC mitotic 92.5 0.55 1.2E-05 45.7 8.2 109 37-153 2-112 (178)
26 PF09026 CENP-B_dimeris: Centr 91.5 0.075 1.6E-06 47.7 0.9 17 529-545 37-53 (101)
27 PTZ00429 beta-adaptin; Provisi 91.5 28 0.00061 41.8 22.2 60 33-98 150-210 (746)
28 cd00020 ARM Armadillo/beta-cat 91.4 0.14 3E-06 44.2 2.5 60 34-99 18-81 (120)
29 KOG0943 Predicted ubiquitin-pr 91.3 0.097 2.1E-06 63.4 1.7 13 371-383 1527-1539(3015)
30 KOG1059 Vesicle coat complex A 91.1 22 0.00048 42.4 19.9 133 1-159 128-265 (877)
31 PF12348 CLASP_N: CLASP N term 90.6 1.5 3.1E-05 43.5 9.1 138 38-189 68-213 (228)
32 KOG0213 Splicing factor 3b, su 90.0 3.8 8.2E-05 48.7 12.7 127 108-248 761-910 (1172)
33 PF02985 HEAT: HEAT repeat; I 89.0 0.44 9.6E-06 33.6 2.9 31 62-98 1-31 (31)
34 KOG1999 RNA polymerase II tran 88.9 0.16 3.5E-06 60.7 0.9 14 594-607 124-137 (1024)
35 PF01602 Adaptin_N: Adaptin N 88.1 2.1 4.6E-05 47.3 9.0 68 18-94 111-179 (526)
36 PTZ00429 beta-adaptin; Provisi 87.8 3.6 7.9E-05 49.1 11.1 133 19-170 103-238 (746)
37 PF10508 Proteasom_PSMB: Prote 87.1 38 0.00081 38.6 18.3 343 36-460 51-418 (503)
38 KOG2160 Armadillo/beta-catenin 87.0 0.76 1.6E-05 49.9 4.5 62 33-99 134-199 (342)
39 KOG1824 TATA-binding protein-i 86.4 5.6 0.00012 48.3 11.4 120 34-159 185-310 (1233)
40 PF13646 HEAT_2: HEAT repeats; 84.4 2.6 5.7E-05 35.0 5.7 47 34-92 42-88 (88)
41 PF05327 RRN3: RNA polymerase 84.2 11 0.00024 43.5 12.4 143 332-490 56-215 (563)
42 KOG3064 RNA-binding nuclear pr 84.1 1.2 2.6E-05 46.6 4.2 39 447-485 149-193 (303)
43 PF04147 Nop14: Nop14-like fam 79.7 1.4 3.1E-05 53.1 3.3 8 598-605 446-453 (840)
44 PF11705 RNA_pol_3_Rpc31: DNA- 79.0 1.3 2.8E-05 45.3 2.3 9 543-551 212-220 (233)
45 KOG1999 RNA polymerase II tran 78.5 1.4 3E-05 53.1 2.6 14 593-607 120-133 (1024)
46 PF03153 TFIIA: Transcription 78.4 0.3 6.6E-06 52.9 -2.6 19 572-590 329-347 (375)
47 PRK09687 putative lyase; Provi 78.0 7 0.00015 41.2 7.4 27 61-93 192-218 (280)
48 PF06524 NOA36: NOA36 protein; 77.3 1.5 3.2E-05 46.1 2.1 20 414-433 165-189 (314)
49 TIGR02270 conserved hypothetic 76.2 7.3 0.00016 43.4 7.3 124 27-180 153-297 (410)
50 COG5137 Histone chaperone invo 75.0 3 6.6E-05 42.8 3.5 14 474-487 137-150 (279)
51 PF14911 MMS22L_C: S-phase gen 74.0 40 0.00086 37.4 12.0 111 62-219 257-372 (373)
52 PF14500 MMS19_N: Dos2-interac 73.6 37 0.00079 35.7 11.3 134 34-185 10-156 (262)
53 PF08389 Xpo1: Exportin 1-like 72.9 14 0.0003 33.5 7.2 56 82-138 3-58 (148)
54 KOG1824 TATA-binding protein-i 72.0 15 0.00032 45.0 8.6 124 45-177 159-284 (1233)
55 KOG0262 RNA polymerase I, larg 71.3 7.7 0.00017 48.3 6.3 24 397-420 1140-1163(1640)
56 KOG1980 Uncharacterized conser 70.3 1.9 4.1E-05 50.1 1.0 15 565-579 453-467 (754)
57 KOG1189 Global transcriptional 70.2 5.3 0.00012 47.4 4.5 33 248-281 550-582 (960)
58 KOG1189 Global transcriptional 70.2 3.4 7.5E-05 48.9 3.0 16 475-490 849-864 (960)
59 KOG0262 RNA polymerase I, larg 70.1 5.8 0.00013 49.3 4.9 30 393-422 1149-1182(1640)
60 PF04281 Tom22: Mitochondrial 67.7 3.4 7.3E-05 39.6 1.9 13 485-497 1-13 (137)
61 KOG2038 CAATT-binding transcri 66.7 4 8.6E-05 48.5 2.6 36 82-119 319-354 (988)
62 cd00020 ARM Armadillo/beta-cat 66.6 2.1 4.5E-05 36.9 0.3 75 15-95 39-119 (120)
63 PF12717 Cnd1: non-SMC mitotic 66.0 59 0.0013 31.6 10.3 105 3-118 9-113 (178)
64 PF09073 BUD22: BUD22; InterP 65.8 19 0.00042 40.2 7.7 9 457-465 118-126 (432)
65 KOG0943 Predicted ubiquitin-pr 65.2 4 8.6E-05 50.5 2.3 18 525-542 1755-1772(3015)
66 PF04147 Nop14: Nop14-like fam 64.7 3.4 7.3E-05 50.0 1.6 10 577-586 446-455 (840)
67 PRK13800 putative oxidoreducta 64.6 6.6 0.00014 47.7 4.1 48 34-94 818-865 (897)
68 COG5406 Nucleosome binding fac 61.9 6.8 0.00015 45.8 3.3 32 38-72 306-337 (1001)
69 PF04889 Cwf_Cwc_15: Cwf15/Cwc 61.2 8.1 0.00018 40.3 3.4 18 523-540 140-157 (244)
70 PF03344 Daxx: Daxx Family; I 60.8 2.8 6.1E-05 49.8 0.0 17 137-153 125-141 (713)
71 KOG4156 Claspin, protein media 60.4 20 0.00043 42.1 6.5 14 562-575 1078-1091(1329)
72 KOG1517 Guanine nucleotide bin 59.9 16 0.00035 45.1 6.0 60 35-100 612-675 (1387)
73 PF05285 SDA1: SDA1; InterPro 59.7 5 0.00011 43.3 1.7 8 415-422 38-45 (324)
74 KOG1241 Karyopherin (importin) 59.6 4.1E+02 0.0088 32.5 19.3 120 36-161 461-607 (859)
75 PTZ00415 transmission-blocking 59.0 4.8 0.0001 51.4 1.5 18 576-593 219-236 (2849)
76 KOG0166 Karyopherin (importin) 58.6 17 0.00037 41.8 5.7 84 33-121 162-252 (514)
77 KOG0127 Nucleolar protein fibr 56.9 10 0.00022 43.7 3.5 24 443-470 162-185 (678)
78 KOG2038 CAATT-binding transcri 52.9 8.2 0.00018 46.1 2.0 54 34-97 315-371 (988)
79 KOG1060 Vesicle coat complex A 52.9 1.3E+02 0.0028 36.7 11.5 193 34-267 119-311 (968)
80 PRK14703 glutaminyl-tRNA synth 52.7 64 0.0014 39.1 9.4 112 40-172 638-764 (771)
81 COG5181 HSH155 U2 snRNP splice 52.0 1.5E+02 0.0033 35.3 11.7 155 109-281 546-743 (975)
82 PF11942 Spt5_N: Spt5 transcri 50.6 8.5 0.00018 34.5 1.4 30 580-609 39-75 (97)
83 COG5657 CSE1 CAS/CSE protein i 50.1 6E+02 0.013 31.7 20.9 98 81-181 507-608 (947)
84 PF02724 CDC45: CDC45-like pro 49.8 13 0.00028 43.6 3.1 23 341-363 8-31 (622)
85 PF03130 HEAT_PBS: PBS lyase H 48.7 27 0.00058 24.0 3.3 27 39-72 1-27 (27)
86 KOG1248 Uncharacterized conser 48.0 7E+02 0.015 31.9 17.0 104 287-414 757-864 (1176)
87 KOG2274 Predicted importin 9 [ 48.0 1E+02 0.0023 37.8 9.9 206 55-281 84-291 (1005)
88 PF10274 ParcG: Parkin co-regu 47.7 66 0.0014 32.4 7.2 116 80-220 11-130 (183)
89 PF13513 HEAT_EZ: HEAT-like re 47.3 11 0.00023 29.3 1.3 22 27-50 34-55 (55)
90 PF12719 Cnd3: Nuclear condens 47.3 3.6E+02 0.0079 28.3 13.9 204 17-258 23-238 (298)
91 KOG1819 FYVE finger-containing 46.9 12 0.00026 42.7 2.1 13 289-301 170-182 (990)
92 KOG2076 RNA polymerase III tra 46.7 12 0.00027 45.1 2.3 9 595-603 136-144 (895)
93 KOG2652 RNA polymerase II tran 45.9 7 0.00015 42.5 0.1 42 235-276 1-50 (348)
94 KOG3130 Uncharacterized conser 45.9 12 0.00027 41.5 2.0 17 173-189 11-27 (514)
95 KOG2051 Nonsense-mediated mRNA 45.3 12 0.00025 46.1 1.8 16 577-592 972-987 (1128)
96 PF03115 Astro_capsid: Astrovi 44.8 7.2 0.00016 46.8 0.0 9 42-50 84-92 (787)
97 PF11894 DUF3414: Protein of u 44.8 7.5E+02 0.016 32.8 17.8 110 302-432 367-491 (1691)
98 KOG2025 Chromosome condensatio 43.5 2E+02 0.0044 34.8 11.2 122 24-183 88-212 (892)
99 KOG0166 Karyopherin (importin) 43.4 34 0.00075 39.4 5.0 115 19-141 315-443 (514)
100 KOG2141 Protein involved in hi 43.3 16 0.00036 43.3 2.5 8 446-453 150-157 (822)
101 TIGR01651 CobT cobaltochelatas 42.4 42 0.00091 39.3 5.5 8 476-483 188-195 (600)
102 PF03344 Daxx: Daxx Family; I 42.0 8.5 0.00018 45.9 0.0 34 103-139 109-142 (713)
103 KOG3779 Homeobox transcription 41.9 54 0.0012 37.3 6.0 63 475-539 247-312 (737)
104 PF03896 TRAP_alpha: Transloco 41.1 39 0.00085 36.1 4.8 22 449-470 5-26 (285)
105 PHA02608 67 prohead core prote 40.1 12 0.00027 32.6 0.7 11 474-484 16-26 (80)
106 COG5215 KAP95 Karyopherin (imp 39.8 91 0.002 36.8 7.5 107 33-147 418-542 (858)
107 PF14812 PBP1_TM: Transmembran 39.7 9.7 0.00021 33.6 0.0 7 531-537 49-55 (81)
108 KOG3871 Cell adhesion complex 39.6 37 0.0008 37.6 4.3 29 566-594 174-208 (449)
109 PF12755 Vac14_Fab1_bd: Vacuol 39.2 27 0.00059 31.3 2.8 59 55-119 21-81 (97)
110 COG5137 Histone chaperone invo 39.1 8.8 0.00019 39.6 -0.4 6 354-359 95-100 (279)
111 COG4547 CobT Cobalamin biosynt 38.3 39 0.00085 38.5 4.3 8 585-592 336-343 (620)
112 COG5406 Nucleosome binding fac 38.2 15 0.00033 43.1 1.2 20 247-267 595-614 (1001)
113 KOG1240 Protein kinase contain 37.8 3.4E+02 0.0074 34.8 12.2 312 36-400 436-790 (1431)
114 smart00567 EZ_HEAT E-Z type HE 37.7 47 0.001 22.8 3.2 30 37-73 1-30 (30)
115 PF08623 TIP120: TATA-binding 37.7 72 0.0016 31.7 5.7 78 81-159 41-119 (169)
116 PRK13800 putative oxidoreducta 37.7 37 0.00081 41.4 4.5 51 34-97 632-682 (897)
117 KOG0291 WD40-repeat-containing 37.1 35 0.00076 40.9 3.9 37 424-463 797-833 (893)
118 PF12755 Vac14_Fab1_bd: Vacuol 36.7 36 0.00078 30.5 3.2 70 10-88 17-89 (97)
119 KOG2393 Transcription initiati 36.6 29 0.00062 40.0 3.0 14 424-437 190-203 (555)
120 PLN03200 cellulose synthase-in 36.3 1.6E+02 0.0034 39.7 9.7 56 38-99 666-726 (2102)
121 PF07093 SGT1: SGT1 protein; 35.8 87 0.0019 36.6 6.9 13 477-489 480-492 (589)
122 KOG4364 Chromatin assembly fac 35.4 16 0.00034 43.1 0.8 8 424-431 402-409 (811)
123 KOG0699 Serine/threonine prote 35.2 24 0.00052 39.1 2.1 7 575-581 374-380 (542)
124 PF04874 Mak16: Mak16 protein 34.4 42 0.00092 30.7 3.2 26 460-486 31-59 (101)
125 PF08767 CRM1_C: CRM1 C termin 33.7 2E+02 0.0043 30.9 8.8 79 104-182 69-149 (319)
126 KOG4535 HEAT and armadillo rep 33.6 59 0.0013 37.5 4.8 112 2-119 507-630 (728)
127 KOG1060 Vesicle coat complex A 33.5 88 0.0019 38.0 6.3 60 33-99 153-219 (968)
128 PF04050 Upf2: Up-frameshift s 33.2 14 0.00031 36.1 0.0 7 575-581 71-77 (170)
129 KOG3064 RNA-binding nuclear pr 32.9 21 0.00046 37.7 1.2 15 397-411 89-103 (303)
130 PF12348 CLASP_N: CLASP N term 31.5 96 0.0021 30.6 5.6 98 81-185 21-126 (228)
131 PF03115 Astro_capsid: Astrovi 31.5 16 0.00034 44.1 0.0 11 124-134 322-332 (787)
132 cd04401 RhoGAP_fMSB1 RhoGAP_fM 31.5 3.6E+02 0.0077 27.5 9.6 86 149-271 74-161 (198)
133 KOG1242 Protein containing ada 31.1 2.5E+02 0.0053 33.1 9.3 113 56-182 211-324 (569)
134 KOG0127 Nucleolar protein fibr 30.1 32 0.00069 39.9 2.0 27 447-473 132-162 (678)
135 PF12054 DUF3535: Domain of un 29.7 1.3E+02 0.0028 34.0 6.8 137 14-155 199-363 (441)
136 COG5096 Vesicle coat complex, 29.5 2.7E+02 0.0059 33.9 9.6 119 17-152 88-210 (757)
137 TIGR02270 conserved hypothetic 29.1 70 0.0015 35.8 4.5 62 24-101 120-181 (410)
138 KOG1061 Vesicle coat complex A 28.5 3E+02 0.0064 33.4 9.5 126 34-172 97-223 (734)
139 KOG2076 RNA polymerase III tra 28.1 30 0.00066 42.0 1.5 19 592-610 128-147 (895)
140 PF12060 DUF3541: Domain of un 27.8 73 0.0016 32.9 4.0 75 240-325 127-220 (227)
141 PF05918 API5: Apoptosis inhib 27.2 1.1E+03 0.024 27.9 16.3 277 43-348 42-355 (556)
142 PF10274 ParcG: Parkin co-regu 26.2 1.1E+02 0.0024 30.8 4.9 81 65-152 42-130 (183)
143 PLN02751 glutamyl-tRNA(Gln) am 26.1 1.8E+02 0.0039 34.0 7.1 117 40-172 407-535 (544)
144 KOG3118 Disrupter of silencing 25.3 47 0.001 37.9 2.3 19 576-594 140-159 (517)
145 PLN03200 cellulose synthase-in 25.1 4.3E+02 0.0093 35.9 10.9 96 34-136 620-725 (2102)
146 PF04826 Arm_2: Armadillo-like 24.9 58 0.0013 34.1 2.8 113 34-152 24-144 (254)
147 KOG2321 WD40 repeat protein [G 24.8 69 0.0015 37.5 3.5 26 284-309 302-330 (703)
148 smart00845 GatB_Yqey GatB doma 24.6 2.1E+02 0.0045 27.2 6.2 36 124-159 92-130 (147)
149 PF00514 Arm: Armadillo/beta-c 24.2 68 0.0015 23.5 2.3 28 62-95 13-40 (41)
150 KOG3130 Uncharacterized conser 24.0 44 0.00095 37.4 1.7 14 210-223 27-40 (514)
151 KOG1834 Calsyntenin [Extracell 23.4 25 0.00054 41.5 -0.3 17 242-258 674-690 (952)
152 PF08167 RIX1: rRNA processing 23.2 6.7E+02 0.014 24.2 9.6 126 20-153 24-162 (165)
153 PF04889 Cwf_Cwc_15: Cwf15/Cwc 23.2 40 0.00087 35.2 1.2 11 596-606 232-242 (244)
154 COG5271 MDN1 AAA ATPase contai 22.8 2.3E+03 0.05 30.1 16.1 56 322-385 3678-3735(4600)
155 KOG1248 Uncharacterized conser 22.2 3.9E+02 0.0084 34.0 9.2 217 17-267 651-893 (1176)
156 PF04871 Uso1_p115_C: Uso1 / p 22.1 1.1E+02 0.0025 29.1 4.0 6 485-490 100-105 (136)
157 PF09073 BUD22: BUD22; InterP 22.1 84 0.0018 35.3 3.5 18 449-466 130-147 (432)
158 KOG3241 Uncharacterized conser 21.7 44 0.00095 33.7 1.1 14 325-338 40-53 (227)
159 PF05793 TFIIF_alpha: Transcri 21.4 31 0.00068 39.7 0.0 25 409-433 159-185 (527)
160 PF13251 DUF4042: Domain of un 21.0 49 0.0011 33.1 1.3 29 64-98 43-71 (182)
161 KOG4264 Nucleo-cytoplasmic pro 20.7 87 0.0019 36.3 3.2 15 482-496 62-76 (694)
162 PF02637 GatB_Yqey: GatB domai 20.4 5.8E+02 0.013 24.0 8.4 118 39-172 13-142 (148)
163 PF08161 NUC173: NUC173 domain 20.3 5E+02 0.011 26.3 8.3 45 124-172 19-63 (198)
164 KOG2652 RNA polymerase II tran 20.1 50 0.0011 36.2 1.2 18 573-590 303-320 (348)
No 1
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-71 Score=623.02 Aligned_cols=498 Identities=19% Similarity=0.234 Sum_probs=402.1
Q ss_pred ccchHHHHHHhhC--hHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhh--cCCccchHHHHHHHHHHHh-ccCCC
Q 007146 2 AYGGLQEFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS--CLPEDISADVYSSLLKALQ-MLDKG 76 (616)
Q Consensus 2 a~G~L~~~L~~~~--~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~--~~~e~~~~~~~~sll~~l~-dp~~~ 76 (616)
++|+|+++|.+.+ |.+++.|+++||||+|+ +++|||||||||++|+|++ |.+++++.++|+++++||. |++
T Consensus 441 ~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~--s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~-- 516 (1010)
T KOG1991|consen 441 MVGSLASILLKKSPYKSQMEYFLVNHVFPEFQ--SPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNE-- 516 (1010)
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhhHhhc--CchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCc--
Confidence 5799999999987 69999999999999999 9999999999999999997 9999999999999999999 775
Q ss_pred CCCcccchhhhhHHHHHHHhcCCCC-----CChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHH
Q 007146 77 DTSCYPVRASAAGAIVGLLENDYMP-----PEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSL 151 (616)
Q Consensus 77 ~~~~~PVRv~Aa~Ai~sll~~~~~p-----~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~l 151 (616)
+||||.||.||++||.|+..- +-++|++|++.+.+.+-++| .|..+|++||++|+|+++|||+.|||+|
T Consensus 517 ----lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End--~Lt~vme~iV~~fseElsPfA~eL~q~L 590 (1010)
T KOG1991|consen 517 ----LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND--DLTNVMEKIVCKFSEELSPFAVELCQNL 590 (1010)
T ss_pred ----CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence 999999999999999999833 35778888555554444433 4999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC--CCCcc
Q 007146 152 VAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI--QPLEC 229 (616)
Q Consensus 152 a~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~--~~~e~ 229 (616)
|. .|+|+.+.+.++++.++++. ++|+|| ++|++|+|.++...|. .++|+
T Consensus 591 a~-------------------------~F~k~l~~~~~~~~~~ddk~-iaA~Gi---L~Ti~Til~s~e~~p~vl~~le~ 641 (1010)
T KOG1991|consen 591 AE-------------------------TFLKVLQTSEDEDESDDDKA-IAASGI---LRTISTILLSLENHPEVLKQLEP 641 (1010)
T ss_pred HH-------------------------HHHHHHhccCCCCccchHHH-HHHHHH---HHHHHHHHHHHhccHHHHHHHHH
Confidence 99 66666666666666666666 999999 5999999999999993 99999
Q ss_pred ccCCCC--cccccHHHHHH---HHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhh-hcccC--c
Q 007146 230 EVSAPP--SCIDDSSMLLR---SIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEI-VNLHS--K 301 (616)
Q Consensus 230 ~~~P~~--~~~~D~s~ll~---~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~-v~~~~--~ 301 (616)
+++|++ .+.+|.+++|+ +|+.++|++...|++. ||.+|++++.....|. +||+.+| +.+|| -
T Consensus 642 ~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~---mW~ll~li~e~~~~~~-------~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 642 IVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI---MWGLLELILEVFQDDG-------IDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH---HHHHHHHHHHHHhhhh-------HHHHHHHHHHHhhhee
Confidence 999999 99999999999 6677788888888888 9999999999999998 9999999 67777 5
Q ss_pred ccccchhhccCCCCCCCCCCchhHHhhHHHHHHHHHH--hCchh-hhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHH
Q 007146 302 YELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL--QYPSA-TWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCA 378 (616)
Q Consensus 302 ~g~~~F~~~~~~~~~a~p~~~~s~~~~i~~fvs~ai~--~~p~a-~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~ 378 (616)
||+..|.. +|.|.+-+++ +++++++ +--+. +..|||+++.++.+|| |.+|++++.|+++
T Consensus 712 ~g~~~~~s--------~~~y~~il~~----i~~~~l~~e~~~D~d~~~a~kLle~iiL~~k------g~~dq~iplf~~~ 773 (1010)
T KOG1991|consen 712 YGTPSLLS--------NPDYLQILLE----IIKKVLTSENGEDSDCESACKLLEVIILNCK------GLLDQYIPLFLEL 773 (1010)
T ss_pred eCchhhhc--------cchHHHHHHH----HHHHHHcCCCCchHHHHHHHHHHHHHHHHhc------CcHhhHhHHHHHH
Confidence 99998885 6777777776 9999999 34555 8889999999999999 9999999999999
Q ss_pred HHHhhhhhcCCCCC-chhhHHHHHhhhhccChhhhhhHhhccCCC--chhhhHHHHHhhccCCCCCCcchhhhHHHHHHH
Q 007146 379 AFSRFRAIQSKPSS-LWKPVVLAISSCYLCYPAVVEGILKKDEDG--GFALWGSALAFLCSSSLEPRLSLESEIKLAVLT 455 (616)
Q Consensus 379 A~~rl~~~~s~~~~-l~KpLIlvIs~c~~ynP~lveqvLek~~~~--gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~ 455 (616)
|.+|+++. ++++ +.+.+++||+||+||||.+++|+|++.+-+ -|++||+.+.+ +.++|+||+||||
T Consensus 774 a~~~l~~~--~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~---------~~~~HDkKlcvL~ 842 (1010)
T KOG1991|consen 774 ALSRLTRE--VETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQ---------FKKVHDKKLCVLG 842 (1010)
T ss_pred HHHHHhcc--ccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHH---------HHhhhhHHHHHHH
Confidence 99999863 3444 445599999999999999999999999999 49999999999 7779999999999
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhhhcccccCCCCCccccCCccccCCCCCCCCCCCCCcccchhhHHHH
Q 007146 456 LAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKEVQEDEENDEGDDEEAEDKEDDNEESEDDDEDSEGDECEETEEEFL 535 (616)
Q Consensus 456 L~svi~~Ll~~~~pg~~~ln~~~~slLe~~~~lke~~dededEe~~d~~~~~~~ee~eD~~ddd~~~d~de~ee~e~e~l 535 (616)
|+++++.....+.|+. .+++.++.++..+..||+........++++.+++++++++++|+ -.+|+||.++++.+|.
T Consensus 843 l~tli~l~~~~~~~~e-~l~~l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e~---~~~d~dD~d~~d~d~~ 918 (1010)
T KOG1991|consen 843 LLTLISLGQDPQLPSE-VLGQLGPALVELLLSLPEALAERAQVEEEDSEEGEEEDDDEEED---FIDDEDDIDEDDQDYL 918 (1010)
T ss_pred HHHHHhccccCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhh---ccCccccccccchhHH
Confidence 9998877322233333 56799999999999999976655554333221122222111111 1223333444555788
Q ss_pred HHHHHHHhhcccccccCCCCCc---cccccccc-ccccccchhhHHHHhh
Q 007146 536 ERYAKAAVNLENNTLVEEGDVE---DQEHDIEL-GSLDEVDQLKVVASSI 581 (616)
Q Consensus 536 e~~a~~A~~le~~e~~ee~~dd---d~e~dee~-~~ldevd~~~~Vls~~ 581 (616)
+.+.+.+..-++..+++||.++ ++++|+.+ .+||.||++..+-+.+
T Consensus 919 ~~~~~~~~~~~~~~~~ddd~d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i 968 (1010)
T KOG1991|consen 919 DEYGELALEKEDSLDDDDDFDEDELDLEEDELFETPLDQVDPFQLFKEAI 968 (1010)
T ss_pred HhhccccccccccccccccccchhccccccccccCcccccchHHHHHHHH
Confidence 8888777765443333333333 34556666 8999999997444333
No 2
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-36 Score=331.81 Aligned_cols=412 Identities=14% Similarity=0.127 Sum_probs=320.7
Q ss_pred HHHHhhC--hHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhh-cCCccchHHHHHHHHHHHhccCCCCCCcccch
Q 007146 8 EFLREQK--SEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPEDISADVYSSLLKALQMLDKGDTSCYPVR 84 (616)
Q Consensus 8 ~~L~~~~--~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~-~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVR 84 (616)
+|+.+.+ ....+.++++||.|.|. ++++||++|||-.+..|.- |.+.+...++|..+++||.+. .+|||
T Consensus 445 s~itk~sp~an~me~fiv~hv~P~f~--s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn------~lpv~ 516 (970)
T COG5656 445 SFITKMSPAANVMEYFIVNHVIPAFR--SNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNN------HLPVM 516 (970)
T ss_pred HHhccCchHHHHHHHHHHHHhhHhhc--CcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcC------Ccchh
Confidence 4455544 45677788899999999 9999999999999999964 999999999999999999995 59999
Q ss_pred hhhhHHHHHHHhcCCCCCC----hhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccC
Q 007146 85 ASAAGAIVGLLENDYMPPE----WYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMH 160 (616)
Q Consensus 85 v~Aa~Ai~sll~~~~~p~~----~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~ 160 (616)
+.||-||+.||.|.+--+. .++.+|++.+....=+.| .|--+|+.+|+.|.|++.||+|.|+.+|+++++|+.
T Consensus 517 ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD--~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkia- 593 (970)
T COG5656 517 IEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID--PLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIA- 593 (970)
T ss_pred hhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccch--HHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHH-
Confidence 9999999999999984333 456677888777766666 799999999999999999999999999999999986
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC--CCCccccCCCC--c
Q 007146 161 PSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI--QPLECEVSAPP--S 236 (616)
Q Consensus 161 ~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~--~~~e~~~~P~~--~ 236 (616)
.. ..+++ +|-..-.+.+.++|+|- ++|+.|++-+..-+|. -.+|..+.|+. .
T Consensus 594 -------------------q~-l~ens-~d~~s~vDDKqmaasGi---L~T~~smiLSlen~p~vLk~le~slypvi~Fi 649 (970)
T COG5656 594 -------------------QS-LLENS-SDTSSVVDDKQMAASGI---LRTIESMILSLENRPLVLKYLEVSLYPVISFI 649 (970)
T ss_pred -------------------HH-HHcCC-ccccccccHHHHHHHHH---HHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 11 12222 22221122344899998 6999999999999994 78889999998 7
Q ss_pred ccccHHHHHHHHHHHccccchhhhhhHHHHH-HHHHHHHhhhhhhhhhccchhhHHHHhh-hcccC--cccccchhhccC
Q 007146 237 CIDDSSMLLRSIILSVSERNVIEELKLSELL-LVWADLIGDWHAWEETEDLSVFDCIKEI-VNLHS--KYELKNFIVRQM 312 (616)
Q Consensus 237 ~~~D~s~ll~~il~~~t~~~~~~~~kis~l~-~~wa~~~~~w~~Wee~ed~~~~d~i~e~-v~~~~--~~g~~~F~~~~~ 312 (616)
+.++.+++|.|++..+..++.. ++.|++.+ .+|.++...-.. ++ ++ +|.+++ ..++| -||-..|-.
T Consensus 650 lkn~i~dfy~Ea~dildg~tf~-skeI~pimwgi~Ell~~~l~~----~~-t~-~y~ee~~~al~nfityG~~ef~~--- 719 (970)
T COG5656 650 LKNEISDFYQEALDILDGYTFM-SKEIEPIMWGIFELLLNLLID----EI-TA-VYSEEVADALDNFITYGKTEFMD--- 719 (970)
T ss_pred HhhhHHHHHHHHHHHHhhhhHH-HHHhhhhhhHHHHHHHhcccc----cc-hh-hhHHHHHHHHHHHHHhCcccccc---
Confidence 7899999999999998888888 77788766 333333322222 22 23 999999 44444 388666654
Q ss_pred CCCCCCCCCchhHHhhHHHHHHHHHH-hCchh--hhhhhhHHHHHhhCCCccccchh-hHHhHHHHHHHHHHHhhhhhcC
Q 007146 313 PPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSA--TWRACSCVHTLLHVPKYSFETEG-VKQSLTISFSCAAFSRFRAIQS 388 (616)
Q Consensus 313 ~~~~a~p~~~~s~~~~i~~fvs~ai~-~~p~a--~~rAck~~h~vLh~~~~s~~~eg-~~~~~~~~f~~~A~~rl~~~~s 388 (616)
.|.|-+-+.+ +++.+.. ..-.. ..-+||+.+.++.+-+ | ..+++++.|+..|-+-++.+..
T Consensus 720 -----~~~y~~i~~e----I~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~r------d~Ll~qy~plfi~vags~l~~~dE 784 (970)
T COG5656 720 -----AGIYGSICSE----ISKLCLCSEENFLEDFIGVCRIIESLILNIR------DELLSQYLPLFISVAGSGLKMIDE 784 (970)
T ss_pred -----ccchhHHHHH----HHHHHHcchhhhHHHHHHHHHHHHHHHHHcc------chhHHhhhHHHHHHHhhhhhcccc
Confidence 4556655555 7777777 33322 8899999999999999 6 8889999999999999986544
Q ss_pred CCCCchhhHHHHHhhhhccChhhhhhHhhccCCC--chhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhcC
Q 007146 389 KPSSLWKPVVLAISSCYLCYPAVVEGILKKDEDG--GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGL 466 (616)
Q Consensus 389 ~~~~l~KpLIlvIs~c~~ynP~lveqvLek~~~~--gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~~ 466 (616)
.+ +..++++.+|.||+|++|-.++|+|+..+.+ -|+.||+...+ |+|.|+||++|+.+.+++.. +-.
T Consensus 785 lg-~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ipk---------fkrvhdkKLsvlaIltii~l-~~v 853 (970)
T COG5656 785 LG-PASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIPK---------FKRVHDKKLSVLAILTIIRL-QEV 853 (970)
T ss_pred cc-chhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhcCcc---------hhhhhhhHhHHHHHHHHHHh-ccc
Confidence 44 7888899999999999999999999999999 49999998655 99999999999999998877 322
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhh
Q 007146 467 GNPGSSLLQDCYASLMEAAVQLKE 490 (616)
Q Consensus 467 ~~pg~~~ln~~~~slLe~~~~lke 490 (616)
++-....+++...-++..+..|++
T Consensus 854 ~~~~e~lv~nLg~vlv~l~~sLPe 877 (970)
T COG5656 854 GALPELLVHNLGEVLVALVTSLPE 877 (970)
T ss_pred ccchhhhhhHHHHHHHHHHHhhHH
Confidence 222222334443333444444555
No 3
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.2e-09 Score=117.99 Aligned_cols=376 Identities=17% Similarity=0.190 Sum_probs=252.8
Q ss_pred HHHhhcccCcccCCcch-hHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 21 LVRSRVLPLYSVSVCLP-YLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 21 l~~~~V~P~~~~~~~sp-~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
.+.+..+|+.+.+...- -+|-|-.|++|+-.+.- +.+....+|.++++.|.|.| |+|||..+|-+++-.|+.-
T Consensus 484 Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~-----D~vV~Ltt~~tlkl~vDD~ 558 (978)
T KOG1993|consen 484 WLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQN-----DLVVRLTTARTLKLVVDDW 558 (978)
T ss_pred HHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccc-----cceeehHHHHHHHHhhhhc
Confidence 34466788777433332 89999999999999843 67788889999999999997 7999999999999999864
Q ss_pred C-CCCChhhHHH-------HHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHH
Q 007146 99 Y-MPPEWYPLLQ-------VIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 170 (616)
Q Consensus 99 ~-~p~~~~plLq-------~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~v 170 (616)
- .+..+.|+|+ +++..+++-|.- -..+.+|+|++++-+|.|+||+..|+|-|..
T Consensus 559 nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk-~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~----------------- 620 (978)
T KOG1993|consen 559 NFSEDSFLPYLENLFVLLFKLLKAVEECDTK-TSVLNLLSTLIERVSEHIAPYASTIVQYLPL----------------- 620 (978)
T ss_pred cCChhhhhhhHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------------
Confidence 4 6667777777 777778877732 2358999999999999999999999998773
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCC---------CCc--cccCCCCcccc
Q 007146 171 ERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQ---------PLE--CEVSAPPSCID 239 (616)
Q Consensus 171 e~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~---------~~e--~~~~P~~~~~~ 239 (616)
.|+.+.. . ...-| +|+.|+-.+.+++-..++. ++. ++-.+-.-+..
T Consensus 621 ------------LWe~s~~--------e--~lLr~-alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~E 677 (978)
T KOG1993|consen 621 ------------LWEESEE--------E--PLLRC-ALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLE 677 (978)
T ss_pred ------------HHhhhcc--------C--cHHHH-HHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhh
Confidence 4655542 1 22334 6778888888887776641 222 22222338889
Q ss_pred cHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhhcccCcccccchhhccCCCCCCCC
Q 007146 240 DSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPP 319 (616)
Q Consensus 240 D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~~~g~~~F~~~~~~~~~a~p 319 (616)
||.+|..-.+.+.+-+++. ++.+.+-|..--.- . .+-+.-++-+.++|- ++ .++
T Consensus 678 DgmeLW~~~L~n~~~l~p~-------ll~L~p~l~~~iE~--s------te~L~t~l~Ii~sYi---lL--------d~~ 731 (978)
T KOG1993|consen 678 DGMELWLTTLMNSQKLTPE-------LLLLFPHLLYIIEQ--S------TENLPTVLMIISSYI---LL--------DNT 731 (978)
T ss_pred hHHHHHHHHHhcccccCHH-------HHHHHHHHHHHHHh--h------hhhHHHHHHHHHHHH---hh--------ccH
Confidence 9999998888877666665 77777776653322 1 222222333444554 22 255
Q ss_pred CCchhHHhhHHHHHHHHHHhCchh-hhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCchhh-H
Q 007146 320 VPPQSIIEGIGAFLSEAILQYPSA-TWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKP-V 397 (616)
Q Consensus 320 ~~~~s~~~~i~~fvs~ai~~~p~a-~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~Kp-L 397 (616)
++-..+..+|+.-+.+-.+....- ...-||.++.++..-- -....+..+.+-..|.-+- ...+-|+..- -
T Consensus 732 ~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~------il~~~~~~~~L~~lf~~I~--~~~~yP~~~~~y 803 (978)
T KOG1993|consen 732 VFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP------ILGSLLFSPLLSRLFLSIA--ENDKYPYVMGEY 803 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH------HHHhhhcchhhHHHHHHHH--hCCCCchhHHHH
Confidence 555667777777888888866666 7778999999887653 1222233333333333332 2355666666 8
Q ss_pred HHHHhhhhccChhhhhhHhhccCCC------chhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhcCCCCCC
Q 007146 398 VLAISSCYLCYPAVVEGILKKDEDG------GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGS 471 (616)
Q Consensus 398 IlvIs~c~~ynP~lveqvLek~~~~------gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~~~~pg~ 471 (616)
+++||.-.+-||++...+++-...- -..-|.-+...| + --..+||.++||+|+ +..+|+.-
T Consensus 804 l~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I--------~-~~k~rKl~~LalsSl----l~t~~~~i 870 (978)
T KOG1993|consen 804 LLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHI--------N-HPKDRKLNTLALSSL----LRTNNPDI 870 (978)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccC--------C-CHHHhhHHHHHHHHH----hccCCcHH
Confidence 8899999999999999999876622 256676665543 2 335789999999994 44334432
Q ss_pred chhhHHHHHHHHHHHh-hhhhc
Q 007146 472 SLLQDCYASLMEAAVQ-LKEVQ 492 (616)
Q Consensus 472 ~~ln~~~~slLe~~~~-lke~~ 492 (616)
..-|.++++.... |.|+.
T Consensus 871 ---la~~~~I~nl~~e~L~eV~ 889 (978)
T KOG1993|consen 871 ---LAVLDSIMNLWFEVLSEVM 889 (978)
T ss_pred ---HHHHhHHHHHHHHHHHHHh
Confidence 3344444444333 34444
No 4
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.14 E-value=5.2e-10 Score=122.77 Aligned_cols=323 Identities=17% Similarity=0.160 Sum_probs=200.8
Q ss_pred CCCCCChhhHHHHHHhhccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHH
Q 007146 98 DYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAA 176 (616)
Q Consensus 98 ~~~p~~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~ 176 (616)
+..| ...+||+.+++.++... .|+..|...+=.++-..+|.+.|+++.++++|+..+ +.+-.||. .|+-----|++
T Consensus 19 di~p-~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il-~~v~kNPs-nP~FnHylFEs 95 (435)
T PF03378_consen 19 DIQP-FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAIL-KEVSKNPS-NPRFNHYLFES 95 (435)
T ss_dssp GTTC-CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHH-HHHHTS----HHHHHHHHHH
T ss_pred Hhhh-hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHhCCC-CcchhhhHHHH
Confidence 4455 88999999999987755 555589898888999999999999999999999744 55545555 67777777777
Q ss_pred HHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHH---HHHHHcc
Q 007146 177 LALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLR---SIILSVS 253 (616)
Q Consensus 177 l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~ll~---~il~~~t 253 (616)
+++..+.--++.++- ..... .++...|.++|| +|..++.. .|++++.
T Consensus 96 i~~lir~~~~~~~~~--------v~~~E-~~L~P~f~~ILq---------------------~dV~EF~PYvfQIla~Ll 145 (435)
T PF03378_consen 96 IGALIRFVCEADPEA--------VSQFE-EALFPPFQEILQ---------------------QDVQEFIPYVFQILAQLL 145 (435)
T ss_dssp HHHHHHHS-GGGHH-----------HHH-HHHHHHHHHHHH---------------------TT-TTTHHHHHHHHHHHH
T ss_pred HHHHHHhccCCChhH--------HHHHH-HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 777777544333310 01111 122444444444 45554444 4555555
Q ss_pred ccch--hhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhhcccC---cccccchhhccCCCCCCCCCCchhHHhh
Q 007146 254 ERNV--IEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHS---KYELKNFIVRQMPPPPAPPVPPQSIIEG 328 (616)
Q Consensus 254 ~~~~--~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~---~~g~~~F~~~~~~~~~a~p~~~~s~~~~ 328 (616)
..++ .++.. .+.+|+-++.. .-|+. -..|.-+|.+.. +.+...+ + ++ ...+.+++
T Consensus 146 e~~~~~~~p~~---y~~L~~~Ll~p-~lWe~------~gniPalvrLL~a~i~k~~~~i-~-------~~-~~l~~iLg- 205 (435)
T PF03378_consen 146 ELRPSSPLPDA---YKQLFPPLLSP-ALWER------RGNIPALVRLLQAYIKKDPSFI-V-------AN-NQLEPILG- 205 (435)
T ss_dssp HHSS--S--TT---TGGGHHHHTSG-GGGGS------TTTHHHHHHHHHHHHHHHGGG-------------S-CHHHHH-
T ss_pred HcCCCCCCcHH---HHHHHHHHcCc-chhcc------CCCcCcHHHHHHHHHHhCchhh-c-------ch-hhHHHHHH-
Confidence 5555 33333 66777877766 77873 234455554444 2444433 3 12 23445665
Q ss_pred HHHHHHHHHH-hCchhhhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHhhhh-c
Q 007146 329 IGAFLSEAIL-QYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCY-L 406 (616)
Q Consensus 329 i~~fvs~ai~-~~p~a~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~KpLIlvIs~c~-~ 406 (616)
++.+.|. +.-+ --|-.+.++++..+. ....+.+.+.+..+.+.||++ ++...+.|-++..++.+. +
T Consensus 206 ---vFQkLi~sk~~D--~~gF~LL~~iv~~~p-----~~~l~~yl~~I~~lll~RLq~--skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 206 ---VFQKLIASKAND--HYGFDLLESIVENLP-----PEALEPYLKQIFTLLLTRLQS--SKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp ---HHHHHHT-TTCH--HHHHHHHHHHHHHS------HHHHGGGHHHHHHHHHHHHHH--C--HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCCcc--hHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHH
Confidence 8888886 4333 347789998888777 147899999999999999986 566778888777766554 8
Q ss_pred cChhhhhhHhhccCCCchhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHH
Q 007146 407 CYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAV 486 (616)
Q Consensus 407 ynP~lveqvLek~~~~gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~~~~pg~~~ln~~~~slLe~~~ 486 (616)
|+|+...+.+++-..+-|..+...+-. +-.++++..+|||+|++|++|++.. +..+.+. ..+.+..++++++
T Consensus 274 ~g~~~li~~id~IQ~glF~~il~~v~l----p~~~k~~~~~erKi~~vGltkLL~e--s~~~~~~--~~~~w~~ll~~Ll 345 (435)
T PF03378_consen 274 YGPDFLIQTIDSIQPGLFGMILEKVWL----PDLQKVSGPIERKICAVGLTKLLCE--SPAFLSE--YSQLWPPLLEALL 345 (435)
T ss_dssp H-HHHHHHHHHTTSTTHHHHHHHHTHH----HHGGG--SHHHHHHHHHHHHHHHHS--STTHHHH---CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHhc----CchhhcCCcchhhHHHHHHHHHHhc--cHhhhhH--HHHHHHHHHHHHH
Confidence 899999999987777645444443211 1122478889999999999996433 1111111 3567777888888
Q ss_pred hhhhhcc
Q 007146 487 QLKEVQE 493 (616)
Q Consensus 487 ~lke~~d 493 (616)
++.+...
T Consensus 346 ~ll~~p~ 352 (435)
T PF03378_consen 346 KLLERPP 352 (435)
T ss_dssp HHHHTTS
T ss_pred HHHcCCc
Confidence 8877654
No 5
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.13 E-value=3.3e-08 Score=113.95 Aligned_cols=344 Identities=19% Similarity=0.196 Sum_probs=202.4
Q ss_pred CcchhHHHhhHHHHhhhhhc--CCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHH
Q 007146 34 VCLPYLVASANWILGELASC--LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVI 111 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~--~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i 111 (616)
.-+|+|..||-|.++.|+.- -...+++..++..+.++.+-+ --|||++|.-|++... ++.-..|++|.+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~-----~~~~ki~a~~~~~~~~----~~~vl~~~~p~i 531 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDV-----PPPVKISAVRAFCGYC----KVKVLLSLQPMI 531 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCC-----CCchhHHHHHHHHhcc----CceeccccchHH
Confidence 56789999999999999984 377888999999999988775 5799999999998876 666677777744
Q ss_pred Hhh----cccccch-hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 007146 112 VGR----IGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 186 (616)
Q Consensus 112 ~~~----i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~ 186 (616)
... ..--.+| ...|..+|+.+|-.-.|+-+.-=.-||...-+-++|.. .| |||+.++-.-+-..-|..+.
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s---~D--P~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYS---ED--PQVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhc---CC--chHHHHHHHHHHHHHHHHHh
Confidence 443 3322222 22345556555544444433333334444444444443 23 39888877777777776666
Q ss_pred hhhhhhhccc--------cchhhhhh-hhHHHHHHHHHHHHhhcccCC-CCccccCCCC----cccccHHHHHH--HHHH
Q 007146 187 FLREEVELDQ--------SSGKWESG-QAAIAKAFSALLQQAWLTHIQ-PLECEVSAPP----SCIDDSSMLLR--SIIL 250 (616)
Q Consensus 187 ~~~d~~~~~~--------~~~~~a~G-~~~~~~~~stlLq~a~~~p~~-~~e~~~~P~~----~~~~D~s~ll~--~il~ 250 (616)
..|.-+.--+ ..+++-.| |...+-.+.|+++.... |++ .+-++.+|++ .-++|--++=. ||+|
T Consensus 607 ~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~-pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 607 YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS-PLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC-CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 6553332211 01122234 44445556667776654 453 3347788877 33444443333 9998
Q ss_pred HccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccc--hhhHHHHhhhcccCcccccchhhccCCCCCCCCCCchhHHhh
Q 007146 251 SVSERNVIEELKLSELLLVWADLIGDWHAWEETEDL--SVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEG 328 (616)
Q Consensus 251 ~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~--~~~d~i~e~v~~~~~~g~~~F~~~~~~~~~a~p~~~~s~~~~ 328 (616)
+.-+.+.- ++. +||. |...- .++++.+-.+++..+-.+--|+
T Consensus 686 a~Is~~~e------q~~--------t~~~--e~g~~~~yImqV~sqLLdp~~sds~a~~V-------------------- 729 (1005)
T KOG2274|consen 686 ALISVTLE------QLL--------TWHD--EPGHNLWYIMQVLSQLLDPETSDSAAAFV-------------------- 729 (1005)
T ss_pred HHHhcCHH------HHH--------hhcc--CCCccHHHHHHHHHHHcCCccchhHHHHH--------------------
Confidence 86555444 232 3665 22222 3444444444444332222122
Q ss_pred HHHHHHHHHHhCchhhhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCC-CCchhhHHHHHhhhhcc
Q 007146 329 IGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKP-SSLWKPVVLAISSCYLC 407 (616)
Q Consensus 329 i~~fvs~ai~~~p~a~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~-~~l~KpLIlvIs~c~~y 407 (616)
|-.|.+.|++.+ + -+..-+-.++++-.+|+.. ++ .++..-||+|.+.-.|-
T Consensus 730 -G~lV~tLit~a~-----------------~-------el~~n~d~IL~Avisrmq~---ae~lsviQsLi~VfahL~~t 781 (1005)
T KOG2274|consen 730 -GPLVLTLITHAS-----------------S-------ELGPNLDQILRAVISRLQQ---AETLSVIQSLIMVFAHLVHT 781 (1005)
T ss_pred -hHHHHHHHHHHH-----------------H-------HhchhHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHhhC
Confidence 123333333222 1 1222233456666777765 33 33566688888887888
Q ss_pred ChhhhhhHhhc-cCCCc-------hhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Q 007146 408 YPAVVEGILKK-DEDGG-------FALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLG 465 (616)
Q Consensus 408 nP~lveqvLek-~~~~g-------f~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~ 465 (616)
+++-+...|.+ .+-+| -+-|.+.. +.|--+++.||..+.+++++.|+.+
T Consensus 782 ~~~~~l~FL~Slp~~~g~~AlefVMteW~srq---------hl~~g~ye~kv~i~alc~al~~~~~ 838 (1005)
T KOG2274|consen 782 DLDQLLNFLSSLPGPTGEPALEFVMTEWTSRQ---------HLYFGEYEGKVSIKALCKALQHLIS 838 (1005)
T ss_pred CHHHHHHHHHhCCCCCCCcHHHHHHHHHHhhh---------hhhhhhhhchhhHHHHHHHHHhhhc
Confidence 88888888888 33333 34566554 3477889989999999888888744
No 6
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=7e-05 Score=86.92 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=20.7
Q ss_pred chhhHHHHHHHHHHHhhcccccccCCCCCccc
Q 007146 528 EETEEEFLERYAKAAVNLENNTLVEEGDVEDQ 559 (616)
Q Consensus 528 ee~e~e~le~~a~~A~~le~~e~~ee~~ddd~ 559 (616)
||+++++..-...-+..+|+|++.+||+-+|.
T Consensus 1458 eDGd~~d~~~D~df~~eleeGedgdD~ds~D~ 1489 (1516)
T KOG1832|consen 1458 EDGDEADILIDGDFMEELEEGEDGDDGDSEDE 1489 (1516)
T ss_pred cccccccCCCChHHHHHHhhcCCCCCCCcccc
Confidence 45577777666666777888877665554333
No 7
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.91 E-value=0.00061 Score=53.40 Aligned_cols=52 Identities=38% Similarity=0.484 Sum_probs=43.6
Q ss_pred hhHHHhhHHHHhhhhhcCCc---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 37 PYLVASANWILGELASCLPE---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 37 p~LrA~A~w~~gela~~~~e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
|.+|..|+|.+|+++...++ ....+++..|+.+|.|++ -.||..|+.||+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~------~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD------DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS------HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHhcC
Confidence 57899999999998864433 467789999999999986 59999999999864
No 8
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.58 E-value=0.0025 Score=75.35 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=34.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchH-----HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCLPEDISA-----DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~-----~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
...+|||.-+.|++-. |+++..+. .++.-|.+.|...+ +...|.-+.---++.....+
T Consensus 105 ~~k~~l~e~~~~~l~~---~l~~~~~~~~~~~~l~~~l~~~L~~~~---~~~~~e~lai~l~~~~~~~~ 167 (784)
T PF04931_consen 105 SKKSWLRESCGWVLVQ---ALKESWFEEPCWFTLWQVLEKLLSANK---LAKSPEGLAIWLAYQKFLTN 167 (784)
T ss_pred hchHHHHHHHHHHHHH---HHHhcchhhhhHHHHHHHHHHHHhccc---cccCHHHHHHHHhhhhhccc
Confidence 6788999999999843 55555444 34444555666643 23456544444455554444
No 9
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.41 Score=57.54 Aligned_cols=161 Identities=19% Similarity=0.129 Sum_probs=100.6
Q ss_pred hHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHH-hcCCCCCChhhHHHHHHhhc
Q 007146 38 YLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL-ENDYMPPEWYPLLQVIVGRI 115 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll-~~~~~p~~~~plLq~i~~~i 115 (616)
.-.--|-=++|-+++++ -...+.+.+...|.....|......++ .|+.|+--|..+= ..-..|.+.+..+.-+++..
T Consensus 433 rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~-Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l 511 (1010)
T KOG1991|consen 433 RQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGY-LRARACWVLSQFSSIDFKDPNNLSEALELTHNCL 511 (1010)
T ss_pred hhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhH-HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHh
Confidence 44444556677777744 445677788888888888876665555 7899998887777 44458888999999888887
Q ss_pred cccc-----chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh
Q 007146 116 GYED-----EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLRE 190 (616)
Q Consensus 116 ~~ed-----~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d 190 (616)
-++- -|+++-+|.+=.--+...|.|.||+|++.+.|= ++++. .-...|+..-|..=..=+|
T Consensus 512 ~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL----~L~ne----------~End~Lt~vme~iV~~fse 577 (1010)
T KOG1991|consen 512 LNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL----KLSNE----------VENDDLTNVMEKIVCKFSE 577 (1010)
T ss_pred ccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH----HHHHh----------cchhHHHHHHHHHHHHHHH
Confidence 7521 344444444444444445789999999999864 33321 1223333333332222221
Q ss_pred hhhccccchhhhhhhhHHHHHHHHHHHH
Q 007146 191 EVELDQSSGKWESGQAAIAKAFSALLQQ 218 (616)
Q Consensus 191 ~~~~~~~~~~~a~G~~~~~~~~stlLq~ 218 (616)
| -.-.|---|-+++++|..+||.
T Consensus 578 E-----lsPfA~eL~q~La~~F~k~l~~ 600 (1010)
T KOG1991|consen 578 E-----LSPFAVELCQNLAETFLKVLQT 600 (1010)
T ss_pred h-----hchhHHHHHHHHHHHHHHHHhc
Confidence 1 1213333377889999999997
No 10
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.53 E-value=0.0022 Score=75.83 Aligned_cols=19 Identities=5% Similarity=-0.031 Sum_probs=9.5
Q ss_pred HHHHHhhhhccChhhhhhH
Q 007146 397 VVLAISSCYLCYPAVVEGI 415 (616)
Q Consensus 397 LIlvIs~c~~ynP~lveqv 415 (616)
|+.++.-.+|..|..+-.+
T Consensus 537 L~~~~~lq~~~~~~~~~~~ 555 (784)
T PF04931_consen 537 LLSLVLLQLYNGPEEAVDV 555 (784)
T ss_pred HHHHHHHHHhcCChHHHHH
Confidence 4555555555555554333
No 11
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=96.46 E-value=0.0018 Score=71.23 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHhhhhhcc
Q 007146 474 LQDCYASLMEAAVQLKEVQE 493 (616)
Q Consensus 474 ln~~~~slLe~~~~lke~~d 493 (616)
+|.|++.. +++-+|.+..+
T Consensus 28 i~DtlkKE-~~IRkLgeEaE 46 (458)
T PF10446_consen 28 INDTLKKE-NAIRKLGEEAE 46 (458)
T ss_pred HHHHHHHH-HHHhhhhHHHH
Confidence 57777764 22334544433
No 12
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.38 E-value=0.0028 Score=68.92 Aligned_cols=68 Identities=28% Similarity=0.301 Sum_probs=58.7
Q ss_pred HHHHHHhhcccCcc-cCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHH
Q 007146 18 TANLVRSRVLPLYS-VSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 91 (616)
Q Consensus 18 ~~~l~~~~V~P~~~-~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai 91 (616)
+..+..+||+|+++ -....|+|||+|||.+-.|.+-+|.+....++..++++|.+++ +.||.=||-||
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~------~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSS------YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-------HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------cchhhhhhhhC
Confidence 57778899999998 3457789999999999999999999999999999999999997 99999999876
No 13
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=95.75 E-value=0.03 Score=61.79 Aligned_cols=146 Identities=20% Similarity=0.247 Sum_probs=98.6
Q ss_pred cchHHHHHHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCccc
Q 007146 3 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYP 82 (616)
Q Consensus 3 ~G~L~~~L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~P 82 (616)
|=+++.++.+ .+ .+..|..+.+.-.+. .+.|++|+.|--.++.+. .+++...+...+.++|.|++ .-
T Consensus 63 yl~l~~~~~~-~~-~~~~l~~n~l~kdl~--~~n~~~~~lAL~~l~~i~---~~~~~~~l~~~v~~ll~~~~------~~ 129 (526)
T PF01602_consen 63 YLYLSLYLHE-DP-ELLILIINSLQKDLN--SPNPYIRGLALRTLSNIR---TPEMAEPLIPDVIKLLSDPS------PY 129 (526)
T ss_dssp HHHHHHHTTT-SH-HHHHHHHHHHHHHHC--SSSHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHSSS------HH
T ss_pred HHHHHHHhhc-ch-hHHHHHHHHHHHhhc--CCCHHHHHHHHhhhhhhc---ccchhhHHHHHHHHHhcCCc------hH
Confidence 4444555444 23 355666677766655 888999999988876554 88899999999999999997 78
Q ss_pred chhhhhHHHHHHHhcCCCCCChhh-HHHHHHhhcccccchhhHHHHHHHHHHHh-hhhcc-ccchHHHHHHHHHHHHhcc
Q 007146 83 VRASAAGAIVGLLENDYMPPEWYP-LLQVIVGRIGYEDEENSILFELLSSVVGA-ANENV-ADHIPYIVSSLVAAISKHM 159 (616)
Q Consensus 83 VRv~Aa~Ai~sll~~~~~p~~~~p-lLq~i~~~i~~ed~e~~~L~~lL~tive~-~~e~i-ap~~~~l~~~la~~~~~~~ 159 (616)
||-.|+.|+..+.+. .|....+ +++.+.+.+.+.+ .+.....+..+-+- -+++. ...++.+...|.+-+
T Consensus 130 VRk~A~~~l~~i~~~--~p~~~~~~~~~~l~~lL~d~~--~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l---- 201 (526)
T PF01602_consen 130 VRKKAALALLKIYRK--DPDLVEDELIPKLKQLLSDKD--PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLL---- 201 (526)
T ss_dssp HHHHHHHHHHHHHHH--CHCCHHGGHHHHHHHHTTHSS--HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcc--CHHHHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcc----
Confidence 999999999999988 4545555 6888888885555 44443333333332 22222 244455555544422
Q ss_pred CCCCCCchHHH
Q 007146 160 HPSSEPWPQVV 170 (616)
Q Consensus 160 ~~~~~~~pq~v 170 (616)
..++||-|+.
T Consensus 202 -~~~~~~~q~~ 211 (526)
T PF01602_consen 202 -SDPDPWLQIK 211 (526)
T ss_dssp -TCCSHHHHHH
T ss_pred -cccchHHHHH
Confidence 7889999876
No 14
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=1.8 Score=51.61 Aligned_cols=394 Identities=15% Similarity=0.150 Sum_probs=210.7
Q ss_pred HHHhhcccCccc--CCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 21 LVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 21 l~~~~V~P~~~~--~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
+..++|+|...- .-..|.|+|-|---+=-|-+-++..-...++..++..|.++. +-|-.=||-||--++--+
T Consensus 456 Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s------~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 456 FFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAES------RVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcc------hHHHHHHHHHHHhccccc
Confidence 344788896661 124567888776333222235566677788888888888885 788888999988776433
Q ss_pred C-------C----CCChhhHHHHHHhhccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCc
Q 007146 99 Y-------M----PPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPW 166 (616)
Q Consensus 99 ~-------~----p~~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~ 166 (616)
. . +|-..++|+.+++..+-.+ .|+..|.+.+--++-.-++-+.||+|.+.++|..-+.+-. -|| ..
T Consensus 530 e~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~-KNP-s~ 607 (960)
T KOG1992|consen 530 ENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVS-KNP-SN 607 (960)
T ss_pred cCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHh-cCC-CC
Confidence 3 2 3345568888887766666 6666899999999999999999999999999886333333 222 23
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCC--cccccHHHH
Q 007146 167 PQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPP--SCIDDSSML 244 (616)
Q Consensus 167 pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~--~~~~D~s~l 244 (616)
||.---=|+++.+.-+.-....| .+ +...|..++|.. .+.+|..++
T Consensus 608 P~fnHYLFEsi~~li~~t~~~~~--------------------~~------------vs~~e~aL~p~fq~Il~eDI~Ef 655 (960)
T KOG1992|consen 608 PQFNHYLFESIGLLIRKTCKANP--------------------SA------------VSSLEEALFPVFQTILSEDIQEF 655 (960)
T ss_pred chhHHHHHHHHHHHHHHHhccCc--------------------hH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666555554433333 00 122233444443 444555544
Q ss_pred HH-------HHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhhcccCcccccchhhccCCCCCC
Q 007146 245 LR-------SIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPA 317 (616)
Q Consensus 245 l~-------~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~~~g~~~F~~~~~~~~~a 317 (616)
+- ..+..... .++.. .|.+.+-++. =+.|+-++--.+ +|-+ ++.|+.+
T Consensus 656 iPYvfQlla~lve~~~~---~ip~~---~~~l~~~lLs-p~lW~r~gNipa------lvrL-----l~aflk~------- 710 (960)
T KOG1992|consen 656 IPYVFQLLAVLVEHSSG---TIPDS---YSPLFPPLLS-PNLWKRSGNIPA------LVRL-----LQAFLKT------- 710 (960)
T ss_pred HHHHHHHHHHHHHhcCC---CCchh---HHHHHHHhcC-HHHHhhcCCcHH------HHHH-----HHHHHhc-------
Confidence 43 22222222 22333 2222333322 245653322222 2222 2333332
Q ss_pred CCC--CchhHHhhHHHHHHHHHHhCchhhhhhhhHHHHHh-hCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCch
Q 007146 318 PPV--PPQSIIEGIGAFLSEAILQYPSATWRACSCVHTLL-HVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLW 394 (616)
Q Consensus 318 ~p~--~~~s~~~~i~~fvs~ai~~~p~a~~rAck~~h~vL-h~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~ 394 (616)
++. .+..-++.|-.+..+.|. .++.---+--+..+++ +-.- ..++.+.+......|+|++. |+.-.+.
T Consensus 711 g~~~~~~~~~l~~iLGifqkLia-Ska~Dh~GF~LLn~i~~~~~~------~~~~py~k~i~~llf~Rlqn--skT~kf~ 781 (960)
T KOG1992|consen 711 GSQIVEAADKLSGILGIFQKLIA-SKANDHHGFYLLNTIIESIPP------NELAPYMKQIFGLLFQRLQN--SKTEKFV 781 (960)
T ss_pred CchhhcccccchhHHHHHHHHhc-CcccchhHHHHHHHHHhcCCH------hhhhHHHHHHHHHHHHHHhc--cCcHHHH
Confidence 110 000113344447777775 1111111222333333 3333 46677888889999999985 4555577
Q ss_pred hhHHHHHhhhhccChhhhhhHhhccCCCchhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhcCCCCCCchh
Q 007146 395 KPVVLAISSCYLCYPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLL 474 (616)
Q Consensus 395 KpLIlvIs~c~~ynP~lveqvLek~~~~gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~~~~pg~~~l 474 (616)
|-++.-++-..+=.-.+.+.-.-+.-- +--|.++----...=.|+....-++|++.+|.++++.-.+.. + .. -.
T Consensus 782 k~~~vF~~~~~ik~~~~~l~e~~d~IQ---~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~l~~e~~~~-~-d~-~y 855 (960)
T KOG1992|consen 782 KSFIVFFSLFTIKKGGLMLAEVIDGIQ---PGMFGMLLENFIIPELPKIILRVDRKIMAVGATGLLTETPEL-L-DQ-KY 855 (960)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhcc---hhHHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhhcHHh-h-hH-HH
Confidence 765554331111111111111111111 112223332222333445666789999999999965443222 1 11 23
Q ss_pred hHHHHHHHHHHHhhhhhccc
Q 007146 475 QDCYASLMEAAVQLKEVQED 494 (616)
Q Consensus 475 n~~~~slLe~~~~lke~~de 494 (616)
.+.+..++.+++.+.+-..+
T Consensus 856 ~~l~~~ll~sii~lfe~p~~ 875 (960)
T KOG1992|consen 856 AKLWGPLLFSIIVLFELPSE 875 (960)
T ss_pred HhhhhhHHHHHHHHHhCChh
Confidence 66677778888888776664
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.59 E-value=0.93 Score=51.33 Aligned_cols=314 Identities=14% Similarity=0.131 Sum_probs=157.8
Q ss_pred CcchhHHHhhHHHHhhhhhcC----CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhH--
Q 007146 34 VCLPYLVASANWILGELASCL----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPL-- 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~----~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~pl-- 107 (616)
.++|.+|.-|++.+|.++.-. .-..-.++|..|+.||.||| .-|.-.|+.+|..+..+.. ....|
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d------~~Va~~A~~~L~~l~~~~~---~~~~l~~ 158 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD------LSVAKAAIKALKKLASHPE---GLEQLFD 158 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc------HHHHHHHHHHHHHHhCCch---hHHHHhC
Confidence 678899999999999987522 22233458999999999997 9999999999999987644 33333
Q ss_pred ---HHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHH--HHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Q 007146 108 ---LQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSS--LVAAISKHMHPSSEPWPQVVERGFAALALMAQ 182 (616)
Q Consensus 108 ---Lq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~--la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~ 182 (616)
++.+.+.....++ .+-++.++.+|+.+... +.+...|.+ +-..+++-+-. .|..=| ..+++-|.-++.
T Consensus 159 ~~~~~~L~~l~~~~~~--~vR~Rv~el~v~i~~~S--~~~~~~~~~sgll~~ll~eL~~-dDiLvq--lnalell~~La~ 231 (503)
T PF10508_consen 159 SNLLSKLKSLMSQSSD--IVRCRVYELLVEIASHS--PEAAEAVVNSGLLDLLLKELDS-DDILVQ--LNALELLSELAE 231 (503)
T ss_pred cchHHHHHHHHhccCH--HHHHHHHHHHHHHHhcC--HHHHHHHHhccHHHHHHHHhcC-ccHHHH--HHHHHHHHHHHc
Confidence 4455555555332 24588888888876432 333333333 33334444422 332222 123333444443
Q ss_pred HHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhh
Q 007146 183 SWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELK 262 (616)
Q Consensus 183 ~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~ll~~il~~~t~~~~~~~~k 262 (616)
+=.. -.-+...|. .+.++.+|+....-| ..-...+| -+|++.-......+.+
T Consensus 232 ~~~g----------~~yL~~~gi---~~~L~~~l~~~~~dp--~~~~~~l~-------------g~~~f~g~la~~~~~~ 283 (503)
T PF10508_consen 232 TPHG----------LQYLEQQGI---FDKLSNLLQDSEEDP--RLSSLLLP-------------GRMKFFGNLARVSPQE 283 (503)
T ss_pred ChhH----------HHHHHhCCH---HHHHHHHHhccccCC--cccchhhh-------------hHHHHHHHHHhcChHH
Confidence 1111 111233344 577777777766533 11122222 1112211111111333
Q ss_pred HHHHHHHHHHHHhhhhhhhhhccc----hhhHHHHhhhcccCcccccchh-hccCCCCCCCCCCchhHHhhHHHHHHHHH
Q 007146 263 LSELLLVWADLIGDWHAWEETEDL----SVFDCIKEIVNLHSKYELKNFI-VRQMPPPPAPPVPPQSIIEGIGAFLSEAI 337 (616)
Q Consensus 263 is~l~~~wa~~~~~w~~Wee~ed~----~~~d~i~e~v~~~~~~g~~~F~-~~~~~~~~a~p~~~~s~~~~i~~fvs~ai 337 (616)
....+|.++..-..+.++.|. .+||.+-.+-. ..=|.. ++ .+ .+...+.++. .+...+
T Consensus 284 ---v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~-~L~~~-------~~~~~~~~l~----~~~~~~ 346 (503)
T PF10508_consen 284 ---VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQ-LLLQK-------QGPAMKHVLK----AIGDAI 346 (503)
T ss_pred ---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHH-HHHhh-------cchHHHHHHH----HHHHHh
Confidence 445667777766666555554 45555554421 112322 22 21 2222334444 233333
Q ss_pred HhCchh-hhhhhhHHHHHhhCCCccccch---hhHHhHHHHHHHHHHH-hhhhhcCCCCCchhhHHHHHhhhhccCh
Q 007146 338 LQYPSA-TWRACSCVHTLLHVPKYSFETE---GVKQSLTISFSCAAFS-RFRAIQSKPSSLWKPVVLAISSCYLCYP 409 (616)
Q Consensus 338 ~~~p~a-~~rAck~~h~vLh~~~~s~~~e---g~~~~~~~~f~~~A~~-rl~~~~s~~~~l~KpLIlvIs~c~~ynP 409 (616)
+.-+.- ..||=.+.-.+++...- ..++ ...+.|-..+.+.... +|.++.+.|=|-.|.-...+-.++.-+|
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~-~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTD-RQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 322222 44444444445544441 1112 1244455555555555 6666666666666664444444443333
No 16
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.068 Score=61.78 Aligned_cols=122 Identities=19% Similarity=0.261 Sum_probs=81.6
Q ss_pred CCcchhHHHhhHHHHhhhhh---cC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC--CCCChhh
Q 007146 33 SVCLPYLVASANWILGELAS---CL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY--MPPEWYP 106 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~---~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~--~p~~~~p 106 (616)
+...|-+|.-.||.+|+|+. +. +...|.++++.+++.+.|.+ -=|+=.|.+|.+.|.|+-. --|-.-+
T Consensus 444 ~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N------K~VQEAAcsAfAtleE~A~~eLVp~l~~ 517 (885)
T KOG2023|consen 444 DDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN------KKVQEAACSAFATLEEEAGEELVPYLEY 517 (885)
T ss_pred ccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 47888999999999999998 33 44789999999999999998 6788899999999998765 2225666
Q ss_pred HHHHHHhhccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHH
Q 007146 107 LLQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQV 169 (616)
Q Consensus 107 lLq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ 169 (616)
+|+.+|...+-=- ----+|.-.+.|..++-++++-- |.-. =.+|||.-++|-+.
T Consensus 518 IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~--~~Yi-------qiLmPPLi~KW~~l 572 (885)
T KOG2023|consen 518 ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK--PAYI-------QILMPPLIEKWELL 572 (885)
T ss_pred HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc--HHHH-------HHhccHHHHHHHhc
Confidence 7776666543322 11113444555555554443321 2212 23566666666554
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.6 Score=56.87 Aligned_cols=140 Identities=23% Similarity=0.263 Sum_probs=117.4
Q ss_pred CCcchhHHHhhHHHHhhhhh----cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHH
Q 007146 33 SVCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLL 108 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~----~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plL 108 (616)
.+..|-+|+-|.=.+-++.+ -++.+....+-+++|.+..... ...||=+-|-.|+++-++.+.- .|+.||
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~-----~~~vr~k~~dviAeia~~~l~e-~WPell 120 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSET-----EPSVRHKLADVIAEIARNDLPE-KWPELL 120 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcc-----chHHHHHHHHHHHHHHHhcccc-chHHHH
Confidence 46777888888877766665 6689999999999999998886 6889999999999999999977 999999
Q ss_pred HHHHhhccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 007146 109 QVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 185 (616)
Q Consensus 109 q~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~ 185 (616)
|.++.-+..++ +..-.-+.+|.++.+.|++...||+.-|..-+.. -+..+..| |-=++..|+.+|+.+.+
T Consensus 121 ~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q----~~~d~s~~---vr~~a~rA~~a~~~~~~ 191 (1075)
T KOG2171|consen 121 QFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQ----TMTDPSSP---VRVAAVRALGAFAEYLE 191 (1075)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHH----hccCCcch---HHHHHHHHHHHHHHHhc
Confidence 99999999988 6666779999999999999999999888776554 45555555 66678888888888875
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.076 Score=64.23 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=90.4
Q ss_pred HHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHH----HHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 22 VRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSL----LKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 22 ~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sl----l~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
+..+|+|.+. .|+|-+|..||-.+||++.=+.+....+.+..+ +..|-++. -.=|...||.|+-++.+.
T Consensus 390 Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~-----~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 390 ILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ-----NVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC-----chHHHHHHHHHHHHHHHh
Confidence 3478999888 999999999999999999844444433333333 34444453 345778899999999998
Q ss_pred CCCCCChhhHHHHHHh-h----ccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 007146 98 DYMPPEWYPLLQVIVG-R----IGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVA 153 (616)
Q Consensus 98 ~~~p~~~~plLq~i~~-~----i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~ 153 (616)
+-++ .+-|.|+-+|+ . ..+.- ---.-.+.+|.+|.++.+++.-||...+...|.+
T Consensus 463 ~~~~-~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~ 523 (1075)
T KOG2171|consen 463 CDKS-ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN 523 (1075)
T ss_pred CcHH-HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 8776 88888887776 2 22222 1222348899999999999999999888877765
No 19
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.61 E-value=0.1 Score=46.32 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC-CCCChhhHHHHHHhhcccccchhhH--HHHHHHHHHHhh
Q 007146 60 ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQVIVGRIGYEDEENSI--LFELLSSVVGAA 136 (616)
Q Consensus 60 ~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~-~p~~~~plLq~i~~~i~~ed~e~~~--L~~lL~tive~~ 136 (616)
...|+..++-|.||. .|||+-+-.-|+.||+... ....+..+|+...+.+.++|+= =. .++.|...++++
T Consensus 2 ~~~~~~al~~L~dp~------~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~Dsy-VYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 2 RETLQEALSDLNDPL------PPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSY-VYLNAIKGLAALADRH 74 (92)
T ss_pred hHHHHHHHHHccCCC------cchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHC
Confidence 357889999999995 9999999999999999999 8888889999999999999822 00 178888899988
Q ss_pred hhccccc
Q 007146 137 NENVADH 143 (616)
Q Consensus 137 ~e~iap~ 143 (616)
++.+.|.
T Consensus 75 p~~vl~~ 81 (92)
T PF10363_consen 75 PDEVLPI 81 (92)
T ss_pred hHHHHHH
Confidence 8877654
No 20
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=93.82 E-value=0.028 Score=62.05 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=3.2
Q ss_pred hhHHHHH
Q 007146 447 SEIKLAV 453 (616)
Q Consensus 447 ~e~Kl~v 453 (616)
+--||++
T Consensus 22 ~~~KlTi 28 (458)
T PF10446_consen 22 YKRKLTI 28 (458)
T ss_pred ccccccH
Confidence 4445544
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.83 E-value=4.7 Score=47.86 Aligned_cols=103 Identities=18% Similarity=0.284 Sum_probs=76.8
Q ss_pred CcchhHHHhhHHHHhhhhh-----cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC-CCC-----
Q 007146 34 VCLPYLVASANWILGELAS-----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPP----- 102 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~-----~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~-~p~----- 102 (616)
.++=++|-+|.|.+|+.+. |.|+.+.....+++++.|.|. .=|=..+..|+-+|.++.| .++
T Consensus 417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-------Prva~N~CWAf~~Laea~~eA~~s~~qt 489 (859)
T KOG1241|consen 417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-------PRVASNVCWAFISLAEAAYEAAVSNGQT 489 (859)
T ss_pred CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-------chHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 5566888999999999997 447788889999999999997 4444556789999999888 222
Q ss_pred -----ChhhHHHHHHhhccccc-ch---hhHHHHHHHHHHHhhhhccccc
Q 007146 103 -----EWYPLLQVIVGRIGYED-EE---NSILFELLSSVVGAANENVADH 143 (616)
Q Consensus 103 -----~~~plLq~i~~~i~~ed-~e---~~~L~~lL~tive~~~e~iap~ 143 (616)
-..+++..+++..+-.| ++ .+..+..|.++|.--...+.|-
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 34566666666666555 44 3456899999998776666654
No 22
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.82 E-value=0.22 Score=41.61 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=48.7
Q ss_pred CCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 33 SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
..+.|++|..|++++|++.+ ..+...++..|.|++ .-||..|+.||+.+= -...++.+.
T Consensus 10 ~~~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~d~~------~~vr~~a~~aL~~i~--------~~~~~~~L~ 68 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGELGD-------PEAIPALIELLKDED------PMVRRAAARALGRIG--------DPEAIPALI 68 (88)
T ss_dssp TSSSHHHHHHHHHHHHCCTH-------HHHHHHHHHHHTSSS------HHHHHHHHHHHHCCH--------HHHTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCC-------HhHHHHHHHHHcCCC------HHHHHHHHHHHHHhC--------CHHHHHHHH
Confidence 37889999999999997653 267888999999996 889999999999661 233444555
Q ss_pred hhccccc
Q 007146 113 GRIGYED 119 (616)
Q Consensus 113 ~~i~~ed 119 (616)
+...+++
T Consensus 69 ~~l~~~~ 75 (88)
T PF13646_consen 69 KLLQDDD 75 (88)
T ss_dssp HHHTC-S
T ss_pred HHHcCCC
Confidence 5554444
No 23
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=0.074 Score=62.98 Aligned_cols=24 Identities=25% Similarity=0.081 Sum_probs=17.5
Q ss_pred hhcccCcccCCcch-hHHHhhHHHHhhhhh
Q 007146 24 SRVLPLYSVSVCLP-YLVASANWILGELAS 52 (616)
Q Consensus 24 ~~V~P~~~~~~~sp-~LrA~A~w~~gela~ 52 (616)
+.+.| ...+ -+||.||=++=-||.
T Consensus 749 ~~k~P-----~t~aD~IRalAc~~L~GLaR 773 (1516)
T KOG1832|consen 749 QYKNP-----PTTADCIRALACRVLLGLAR 773 (1516)
T ss_pred hccCC-----CCcHHHHHHHHHHHHhcccc
Confidence 46666 5555 899999988866663
No 24
>PRK09687 putative lyase; Provisional
Probab=92.59 E-value=2 Score=45.22 Aligned_cols=54 Identities=26% Similarity=0.122 Sum_probs=41.4
Q ss_pred CCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHH-HhccCCCCCCcccchhhhhHHHHHH
Q 007146 33 SVCLPYLVASANWILGELASCLPEDISADVYSSLLKA-LQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~-l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
....|.+|..|.|++|++.. +......++..|... +.||+ .-||.+|++||+.+
T Consensus 64 ~~~d~~vR~~A~~aLg~lg~--~~~~~~~a~~~L~~l~~~D~d------~~VR~~A~~aLG~~ 118 (280)
T PRK09687 64 SSKNPIERDIGADILSQLGM--AKRCQDNVFNILNNLALEDKS------ACVRASAINATGHR 118 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHhcCCC------HHHHHHHHHHHhcc
Confidence 36778999999999999875 111245677777765 67885 88999999999987
No 25
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.48 E-value=0.55 Score=45.66 Aligned_cols=109 Identities=23% Similarity=0.258 Sum_probs=79.8
Q ss_pred hhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcc
Q 007146 37 PYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIG 116 (616)
Q Consensus 37 p~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~ 116 (616)
|-+|.+|.=++|-|+-.-| +........+.++|.||+ ..||-.|...|..|+.+++-. --.+++..++..+.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~------~~VR~~al~~Ls~Li~~d~ik-~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDED------PLVRKTALLVLSHLILEDMIK-VKGQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHcCcee-ehhhhhHHHHHHHc
Confidence 5689999999998886443 555667788899999996 999999999999999999954 22344477788887
Q ss_pred cccch-hhHHHHHHHHHHHh-hhhccccchHHHHHHHHH
Q 007146 117 YEDEE-NSILFELLSSVVGA-ANENVADHIPYIVSSLVA 153 (616)
Q Consensus 117 ~ed~e-~~~L~~lL~tive~-~~e~iap~~~~l~~~la~ 153 (616)
+++.+ .+..-..+..+..+ .++-+..+.|.+..+|.+
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 66633 22334555666666 566666677777777664
No 26
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=91.55 E-value=0.075 Score=47.73 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=4.2
Q ss_pred hhhHHHHHHHHHHHhhc
Q 007146 529 ETEEEFLERYAKAAVNL 545 (616)
Q Consensus 529 e~e~e~le~~a~~A~~l 545 (616)
|+++.=+..|.++-.+|
T Consensus 37 e~de~p~p~fgea~~~~ 53 (101)
T PF09026_consen 37 EEDEVPVPEFGEAMAYF 53 (101)
T ss_dssp ---------HHHHHHHH
T ss_pred ccccccchhHHHHHhhc
Confidence 34455556665555444
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=91.50 E-value=28 Score=41.84 Aligned_cols=60 Identities=20% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCcchhHHHhhHHHHhhhhhcCCccc-hHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 33 SVCLPYLVASANWILGELASCLPEDI-SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~~e~~-~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
..++||+|.+|+-.+.++....|+-. -......+.+.|.|+| .=|...|..+|..+-+.+
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~d------p~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNN------PVVASNAAAIVCEVNDYG 210 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCC------ccHHHHHHHHHHHHHHhC
Confidence 37889999999999999988655421 1234455666788886 889999999998887654
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.42 E-value=0.14 Score=44.20 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=47.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc---chH-HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 34 VCLPYLVASANWILGELASCLPED---ISA-DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~---~~~-~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
...+.+|-.|+|.++.++.-.|+. ... .++..+++.|.+++ ..||-.|+.+|+++.++..
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED------EEVVKAALWALRNLAAGPE 81 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC------HHHHHHHHHHHHHHccCcH
Confidence 345899999999999998633221 222 68889999999985 8999999999999988653
No 29
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=0.097 Score=63.38 Aligned_cols=13 Identities=23% Similarity=0.168 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhh
Q 007146 371 LTISFSCAAFSRF 383 (616)
Q Consensus 371 ~~~~f~~~A~~rl 383 (616)
.-..|.++.+.-|
T Consensus 1527 dr~Rf~qat~qVF 1539 (3015)
T KOG0943|consen 1527 DRMRFLQATAQVF 1539 (3015)
T ss_pred HHHHHHHHHHHHH
Confidence 3456777776666
No 30
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.05 E-value=22 Score=42.39 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=94.0
Q ss_pred CccchHHHHHHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhh-cC-CccchHHHHHHHHHHHhccCCCCC
Q 007146 1 MAYGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CL-PEDISADVYSSLLKALQMLDKGDT 78 (616)
Q Consensus 1 ~a~G~L~~~L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~-~~-~e~~~~~~~~sll~~l~dp~~~~~ 78 (616)
+|.|||+.|..- -+++=+-.-||-+.+ ++-||+|-||.=++ +. |+ =++-...+|--+..-|-|||
T Consensus 128 iAL~GLS~fvTp----dLARDLa~Dv~tLL~--sskpYvRKkAIl~l---ykvFLkYPeAlr~~FprL~EkLeDpD---- 194 (877)
T KOG1059|consen 128 LALSGLSCIVTP----DLARDLADDVFTLLN--SSKPYVRKKAILLL---YKVFLKYPEALRPCFPRLVEKLEDPD---- 194 (877)
T ss_pred heecccccccCc----hhhHHHHHHHHHHHh--cCchHHHHHHHHHH---HHHHHhhhHhHhhhHHHHHHhccCCC----
Confidence 467777776432 333334466777667 89999999998555 33 66 33445789999999999996
Q ss_pred CcccchhhhhHHHHHHHhcCCCCCChhhHHH---HHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Q 007146 79 SCYPVRASAAGAIVGLLENDYMPPEWYPLLQ---VIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAI 155 (616)
Q Consensus 79 ~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq---~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~ 155 (616)
.-|..+|++-||.|-+- .|.+.+||-| ++|--.+|-= +|..+|.-+. .++|+=|-|..-|...+
T Consensus 195 --p~V~SAAV~VICELArK--nPknyL~LAP~ffkllttSsNNW----mLIKiiKLF~-----aLtplEPRLgKKLiepl 261 (877)
T KOG1059|consen 195 --PSVVSAAVSVICELARK--NPQNYLQLAPLFYKLLVTSSNNW----VLIKLLKLFA-----ALTPLEPRLGKKLIEPI 261 (877)
T ss_pred --chHHHHHHHHHHHHHhh--CCcccccccHHHHHHHhccCCCe----ehHHHHHHHh-----hccccCchhhhhhhhHH
Confidence 99999999999999664 5666777666 5554444443 6666665543 47788888888887777
Q ss_pred Hhcc
Q 007146 156 SKHM 159 (616)
Q Consensus 156 ~~~~ 159 (616)
..++
T Consensus 262 t~li 265 (877)
T KOG1059|consen 262 TELM 265 (877)
T ss_pred HHHH
Confidence 7766
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=90.60 E-value=1.5 Score=43.51 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=86.6
Q ss_pred hHHHhhHHHHhhhhhcCCcc---chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh-hhHHHHHHh
Q 007146 38 YLVASANWILGELASCLPED---ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-YPLLQVIVG 113 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~~e~---~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~-~plLq~i~~ 113 (616)
-|...||=+++.++..+... ....++..|++.+.+++ -.||-+|..+|..++++..-++.. .+++. .
T Consensus 68 ~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~------~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~---~ 138 (228)
T PF12348_consen 68 KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSK------KFIREAANNALDAIIESCSYSPKILLEILS---Q 138 (228)
T ss_dssp -HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---------HHHHHHHHHHHHHHHTTS-H--HHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcccc------HHHHHHHHHHHHHHHHHCCcHHHHHHHHHH---H
Confidence 67889999999999855433 35667788888888886 789999999999999987723233 33332 2
Q ss_pred hcccccch-hhHHHHHHHHHHHhhh---hccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 007146 114 RIGYEDEE-NSILFELLSSVVGAAN---ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR 189 (616)
Q Consensus 114 ~i~~ed~e-~~~L~~lL~tive~~~---e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~ 189 (616)
...+--.. ....++.|..++++.+ ..+.... ...++...+.+.+ -|+-|.|=+.|..++..|.++|.+.+.
T Consensus 139 ~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~--~~~~l~~~l~~~l---~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 139 GLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSA--FLKQLVKALVKLL---SDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HTT-S-HHHHHHHHHHHHHHHTT-----GGG--HH--HHHHHHHHHHHHH---TSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccc--hHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 22222211 1235888999999999 3333322 2344444455555 688999999999999999998877654
No 32
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=89.97 E-value=3.8 Score=48.66 Aligned_cols=127 Identities=18% Similarity=0.142 Sum_probs=74.1
Q ss_pred HHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhh
Q 007146 108 LQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENF 187 (616)
Q Consensus 108 Lq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~ 187 (616)
+..|....-+.+.+.++.+.-+.+++..++--+-||.|.||+ +++++++..+..--|-.---.+.+|.+-++-++.
T Consensus 761 idgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~s----tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee 836 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICS----TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE 836 (1172)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHH----HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH
Confidence 333333333444444566677888888888899999998886 5677776665443333322234444333322211
Q ss_pred hhhhhhccccchhhhhh--------------hhHHHHHHHHHHHHh----hcccCCCCccccCCCC-----cccccHHHH
Q 007146 188 LREEVELDQSSGKWESG--------------QAAIAKAFSALLQQA----WLTHIQPLECEVSAPP-----SCIDDSSML 244 (616)
Q Consensus 188 ~~d~~~~~~~~~~~a~G--------------~~~~~~~~stlLq~a----~~~p~~~~e~~~~P~~-----~~~~D~s~l 244 (616)
.- +.-.| ...|++|++.|--.. --.|..++=+.+.||+ -....|.+|
T Consensus 837 ~~----------m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdL 906 (1172)
T KOG0213|consen 837 KL----------MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDL 906 (1172)
T ss_pred HH----------HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHH
Confidence 11 22233 234678888887777 4445677778899987 334455666
Q ss_pred HHHH
Q 007146 245 LRSI 248 (616)
Q Consensus 245 l~~i 248 (616)
+..|
T Consensus 907 vg~I 910 (1172)
T KOG0213|consen 907 VGTI 910 (1172)
T ss_pred HHHH
Confidence 6644
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.05 E-value=0.44 Score=33.57 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=26.1
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 62 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 62 ~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
++..++++|.||+ .-||..|+.+|+.+.++.
T Consensus 1 llp~l~~~l~D~~------~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPS------PEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SS------HHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCC------HHHHHHHHHHHHHHHhhC
Confidence 3567899999997 999999999999998863
No 34
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=88.90 E-value=0.16 Score=60.70 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=8.7
Q ss_pred CcHHHHHHHHHhch
Q 007146 594 LSSQLISKFLKAYP 607 (616)
Q Consensus 594 lp~~l~~~f~~~~p 607 (616)
+-+.+.+|..++|-
T Consensus 124 ~~e~~~~r~aee~~ 137 (1024)
T KOG1999|consen 124 LEEELAKRYAEEYI 137 (1024)
T ss_pred HHHHHHHHHHHhhc
Confidence 45666666666665
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=88.13 E-value=2.1 Score=47.30 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=53.8
Q ss_pred HHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHH-HHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 18 TANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISAD-VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 18 ~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~-~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
+..-+...|....+ .++||+|.+|+=.+.++....|+ .... ....+.++|.|++ ..|+..|..++..+
T Consensus 111 ~~~~l~~~v~~ll~--~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~------~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 111 MAEPLIPDVIKLLS--DPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKD------PSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHHHHHH--SSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSS------HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhc--CCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCc------chhHHHHHHHHHHH
Confidence 33344566777666 88999999999999999887554 3333 6888889999996 89999999999888
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=87.80 E-value=3.6 Score=49.10 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=84.8
Q ss_pred HHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 19 ANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 19 ~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
..|..+.+.=... .+.|++|+.|-=.+ +++-.+++...+...|.++|.|++ .-||-.||.|+..+.+.+
T Consensus 103 alLaINtl~KDl~--d~Np~IRaLALRtL---s~Ir~~~i~e~l~~~lkk~L~D~~------pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 103 ALLAVNTFLQDTT--NSSPVVRALAVRTM---MCIRVSSVLEYTLEPLRRAVADPD------PYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHhhC
Confidence 3444444433333 67889999997555 345577888999999999999997 899999999999998765
Q ss_pred CCC---CChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHH
Q 007146 99 YMP---PEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 170 (616)
Q Consensus 99 ~~p---~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~v 170 (616)
-.- ..|.+-|..+ +. |.+.......+..+.+--.+. |-...++......++..+|. -.+|.|+.
T Consensus 172 pelv~~~~~~~~L~~L---L~--D~dp~Vv~nAl~aL~eI~~~~--~~~l~l~~~~~~~Ll~~L~e-~~EW~Qi~ 238 (746)
T PTZ00429 172 MQLFYQQDFKKDLVEL---LN--DNNPVVASNAAAIVCEVNDYG--SEKIESSNEWVNRLVYHLPE-CNEWGQLY 238 (746)
T ss_pred cccccccchHHHHHHH---hc--CCCccHHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHHhhc-CChHHHHH
Confidence 422 2466666654 33 445556655544444432211 11123444444555556644 35899984
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=87.13 E-value=38 Score=38.60 Aligned_cols=343 Identities=17% Similarity=0.136 Sum_probs=174.7
Q ss_pred chhHHHhhHHHHhhhhh-cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh---hhHHHHH
Q 007146 36 LPYLVASANWILGELAS-CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW---YPLLQVI 111 (616)
Q Consensus 36 sp~LrA~A~w~~gela~-~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~---~plLq~i 111 (616)
.+=-..-+|-+++.+-. ..+.....+.-.-+..+|..|+ -.||.-+..+|+.++++.-....+ .-+++.|
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~------~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPS------PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLI 124 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHH
Confidence 34445677888877776 4455567778888899999997 899999999999999877421111 1355567
Q ss_pred Hhhcccccch-hhHHHHHHHHHHHhhhhcccc-chHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhh
Q 007146 112 VGRIGYEDEE-NSILFELLSSVVGAANENVAD-HIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLR 189 (616)
Q Consensus 112 ~~~i~~ed~e-~~~L~~lL~tive~~~e~iap-~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~ 189 (616)
+..++.+|.+ +.....+|..+... .+.+.. +-+++...|. +......+
T Consensus 125 ~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~-----------------------------~l~~~~~~ 174 (503)
T PF10508_consen 125 IQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLK-----------------------------SLMSQSSD 174 (503)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHH-----------------------------HHHhccCH
Confidence 7777777732 22234444444321 111110 0011111111 11111000
Q ss_pred hhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCC--cccccHHHHHHHHHHHccccchhhhhhHHHHH
Q 007146 190 EEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPP--SCIDDSSMLLRSIILSVSERNVIEELKLSELL 267 (616)
Q Consensus 190 d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~--~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~ 267 (616)
+.. .|.+..+..-+.. .|-. .|.+ +-+|..+++.+++-...+++..-+++
T Consensus 175 -------------~vR---~Rv~el~v~i~~~----------S~~~~~~~~~--sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 175 -------------IVR---CRVYELLVEIASH----------SPEAAEAVVN--SGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred -------------HHH---HHHHHHHHHHHhc----------CHHHHHHHHh--ccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 001 1333332222221 1100 2222 12667777777775555566633333
Q ss_pred HHHHHHHhhhhhhhhhccchhhHHHHhhhc-ccCc--------ccccchhhccCCCCCCCCCCchhHHhhHHHHHHHHHH
Q 007146 268 LVWADLIGDWHAWEETEDLSVFDCIKEIVN-LHSK--------YELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL 338 (616)
Q Consensus 268 ~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~-~~~~--------~g~~~F~~~~~~~~~a~p~~~~s~~~~i~~fvs~ai~ 338 (616)
..|-..=|...=.+..++|+-|-+++. .... .|.-.|+.. |-.. .+..+++.+-.|+.+...
T Consensus 227 ---~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~-la~~-----~~~~v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 227 ---SELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN-LARV-----SPQEVLELYPAFLERLFS 297 (503)
T ss_pred ---HHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH-HHhc-----ChHHHHHHHHHHHHHHHH
Confidence 444445555566677888888888842 2211 444445432 1111 234578888888888886
Q ss_pred --hCchhhhhhhhHHHHHhhCCCccccchhh-H--HhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHhhhhccChh-hh
Q 007146 339 --QYPSATWRACSCVHTLLHVPKYSFETEGV-K--QSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPA-VV 412 (616)
Q Consensus 339 --~~p~a~~rAck~~h~vLh~~~~s~~~eg~-~--~~~~~~f~~~A~~rl~~~~s~~~~l~KpLIlvIs~c~~ynP~-lv 412 (616)
+..+.+.+.| -++++=+.+..+.|..-. . ..-.+.+++.++.+.++ .+..+..-.+..+++-+..-++ -.
T Consensus 298 ~~~s~d~~~~~~-A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~---~~~~lk~r~l~al~~il~~~~~~~~ 373 (503)
T PF10508_consen 298 MLESQDPTIREV-AFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS---GSTELKLRALHALASILTSGTDRQD 373 (503)
T ss_pred HhCCCChhHHHH-HHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHhcCCCCch
Confidence 3444444433 344455555433222211 0 12345566666666654 2222333377777755533222 22
Q ss_pred hhHhhccCCCchhhhHHHHHhhccC-CCCCCcch-hhhHHHHHHHHHHHH
Q 007146 413 EGILKKDEDGGFALWGSALAFLCSS-SLEPRLSL-ESEIKLAVLTLAKVV 460 (616)
Q Consensus 413 eqvLek~~~~gf~iWfs~La~v~~s-~~~p~l~~-e~e~Kl~vl~L~svi 460 (616)
++++ .-...||..+..-..+ -+...++. ..|.|++++.+.+.+
T Consensus 374 ~~i~-----~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l 418 (503)
T PF10508_consen 374 NDIL-----SITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQAL 418 (503)
T ss_pred HHHH-----HHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 2222 1256677776653333 12222222 489999999887754
No 38
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.00 E-value=0.76 Score=49.89 Aligned_cols=62 Identities=27% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCcchhHHHhhHHHHhhhhh----cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 33 SVCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~----~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
..+.+=||++|.||+|..++ +=...+-.+.+++|++.+.-.+ +.-||+.|=+||.+||+|..
T Consensus 134 ~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~-----~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 134 ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDD-----PNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCC-----CchHHHHHHHHHHHHHhcCc
Confidence 46677899999999999885 1123344458899999988443 68899999999999999987
No 39
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.41 E-value=5.6 Score=48.34 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=83.0
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHh-cCC----CCCChhhHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE-NDY----MPPEWYPLL 108 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~-~~~----~p~~~~plL 108 (616)
++---+|-|||-.+|-++.-.+...+..+-..+++.|.-+. +---+|.. .-+|++..+ .++ --+.+-|++
T Consensus 185 s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~----q~~~~rt~-Iq~l~~i~r~ag~r~~~h~~~ivp~v 259 (1233)
T KOG1824|consen 185 SPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRT----QMSATRTY-IQCLAAICRQAGHRFGSHLDKIVPLV 259 (1233)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCC----chHHHHHH-HHHHHHHHHHhcchhhcccchhhHHH
Confidence 33348999999999999998888888888888888888773 11223321 112233222 222 344667777
Q ss_pred HHHHhhcccccch-hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhcc
Q 007146 109 QVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHM 159 (616)
Q Consensus 109 q~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~ 159 (616)
-.-.+.++++|.| ....+|.++.++++-+.+|.||.|.|.+.+-. ++..=
T Consensus 260 ~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~-yisYD 310 (1233)
T KOG1824|consen 260 ADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLS-YISYD 310 (1233)
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHH-HhccC
Confidence 7666667666655 22459999999999999999999999987765 44443
No 40
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=84.44 E-value=2.6 Score=35.00 Aligned_cols=47 Identities=30% Similarity=0.263 Sum_probs=39.0
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIV 92 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~ 92 (616)
.+.|.+|..|+|.+|++. ..++...+.+.|.+++ +.-||-.|+.||+
T Consensus 42 d~~~~vr~~a~~aL~~i~-------~~~~~~~L~~~l~~~~-----~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 42 DEDPMVRRAAARALGRIG-------DPEAIPALIKLLQDDD-----DEVVREAAAEALG 88 (88)
T ss_dssp SSSHHHHHHHHHHHHCCH-------HHHTHHHHHHHHTC-S-----SHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-------CHHHHHHHHHHHcCCC-----cHHHHHHHHhhcC
Confidence 688999999999999986 3568888999998875 5678999998875
No 41
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=84.22 E-value=11 Score=43.54 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=66.5
Q ss_pred HHHHHHHhCchhhhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHhhhhccChhh
Q 007146 332 FLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAV 411 (616)
Q Consensus 332 fvs~ai~~~p~a~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~KpLIlvIs~c~~ynP~l 411 (616)
++.......+-...+.=.|+++++.. +--.-.+..++.++.=+++ +.++...++.+.+..+...|.+.|..
T Consensus 56 ~L~~L~~~Vs~Ld~~~~~LV~ail~~-~W~~~~~~~v~~y~~Fl~~--------Lvsa~~~yl~~vl~~LV~~f~p~~~~ 126 (563)
T PF05327_consen 56 WLKALSSCVSLLDSSCKQLVEAILSL-NWLGRDEDFVEAYIQFLIN--------LVSAQPKYLSPVLSMLVKNFIPPPSS 126 (563)
T ss_dssp HHHHHHHGGGGG-SCCHHHHHHHHT--TGGGS-HHHHHHHHHHHHH--------HHHH-GGGHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHhccCCCcc
Confidence 44444435555555655689999887 5433344444443332233 33333447777666666677776665
Q ss_pred hhhH----hhccC----CC---------chhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhcCCCCCCchh
Q 007146 412 VEGI----LKKDE----DG---------GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLL 474 (616)
Q Consensus 412 veqv----Lek~~----~~---------gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~~~~pg~~~l 474 (616)
.... ..+.. .. -++.=.+.+..+=...|++.....+..-..+=.|+++++- - +..-
T Consensus 127 ~~~~~~~~~~~~~~~~~~vH~~L~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y-----~--P~L~ 199 (563)
T PF05327_consen 127 IAEWPGCPPEKRREIYERVHDALQKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEY-----C--PELR 199 (563)
T ss_dssp HHH---------------HHHHHHHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC--------GGGH
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcc-----h--HHHH
Confidence 4442 00000 00 0334445555555556776644444333444444443222 1 2234
Q ss_pred hHHHHHHHHHHHhhhh
Q 007146 475 QDCYASLMEAAVQLKE 490 (616)
Q Consensus 475 n~~~~slLe~~~~lke 490 (616)
..++..+++.++++.-
T Consensus 200 ~~Il~lIi~rLi~iDV 215 (563)
T PF05327_consen 200 SDILSLIIERLIKIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5666666777777655
No 42
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=84.13 E-value=1.2 Score=46.59 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHH----hcCCCCCC--chhhHHHHHHHHHH
Q 007146 447 SEIKLAVLTLAKVVERL----LGLGNPGS--SLLQDCYASLMEAA 485 (616)
Q Consensus 447 ~e~Kl~vl~L~svi~~L----l~~~~pg~--~~ln~~~~slLe~~ 485 (616)
.+|-|.+.-|=+.|+.= +.+|.=|. ++-++.|+..|+..
T Consensus 149 eeKALvAakldkaIekELm~RLk~G~Ygd~yn~~~~~fnK~l~~~ 193 (303)
T KOG3064|consen 149 EEKALVAAKLDKAIEKELMERLKSGTYGDIYNFRQHAFNKALEAR 193 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCcccchHHHHHHHHHhh
Confidence 45556666666655432 44445555 46788888877766
No 43
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=79.67 E-value=1.4 Score=53.07 Aligned_cols=8 Identities=25% Similarity=0.509 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 007146 598 LISKFLKA 605 (616)
Q Consensus 598 l~~~f~~~ 605 (616)
+|+|++..
T Consensus 446 iI~RIrk~ 453 (840)
T PF04147_consen 446 IIQRIRKC 453 (840)
T ss_pred HHHHHHHh
Confidence 34444443
No 44
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=78.96 E-value=1.3 Score=45.32 Aligned_cols=9 Identities=11% Similarity=-0.060 Sum_probs=5.9
Q ss_pred hhccccccc
Q 007146 543 VNLENNTLV 551 (616)
Q Consensus 543 ~~le~~e~~ 551 (616)
++|.+||++
T Consensus 212 ~YFDnGedD 220 (233)
T PF11705_consen 212 NYFDNGEDD 220 (233)
T ss_pred ccCCCCCcc
Confidence 467777763
No 45
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=78.48 E-value=1.4 Score=53.12 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=8.7
Q ss_pred cCcHHHHHHHHHhch
Q 007146 593 TLSSQLISKFLKAYP 607 (616)
Q Consensus 593 ~lp~~l~~~f~~~~p 607 (616)
.+++ +.+-|.++|-
T Consensus 120 ~~~~-~~e~~~~r~a 133 (1024)
T KOG1999|consen 120 QLNE-LEEELAKRYA 133 (1024)
T ss_pred hhhH-HHHHHHHHHH
Confidence 4455 6666666665
No 46
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=78.36 E-value=0.3 Score=52.85 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=12.7
Q ss_pred chhhHHHHhhhhhhhhccc
Q 007146 572 DQLKVVASSIERYHNVIMQ 590 (616)
Q Consensus 572 d~~~~Vls~~~k~h~~l~r 590 (616)
+...+|+-..+|-||+-+|
T Consensus 329 ~~~~~~~c~~~kv~r~k~~ 347 (375)
T PF03153_consen 329 DTDNVVLCQYDKVTRVKNK 347 (375)
T ss_dssp TTS-EEEEEEEEEEEETTE
T ss_pred CcCCEEEEEeeccccccce
Confidence 4556788888888886544
No 47
>PRK09687 putative lyase; Provisional
Probab=77.96 E-value=7 Score=41.16 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhccCCCCCCcccchhhhhHHHHH
Q 007146 61 DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 93 (616)
Q Consensus 61 ~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~s 93 (616)
.+...|+++|.|++ .-||..|+.||+.
T Consensus 192 ~~~~~L~~~L~D~~------~~VR~~A~~aLg~ 218 (280)
T PRK09687 192 DIREAFVAMLQDKN------EEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHhcCCC------hHHHHHHHHHHHc
Confidence 46677788888885 7788888888876
No 48
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.27 E-value=1.5 Score=46.06 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=11.6
Q ss_pred hHhhccCCC-----chhhhHHHHHh
Q 007146 414 GILKKDEDG-----GFALWGSALAF 433 (616)
Q Consensus 414 qvLek~~~~-----gf~iWfs~La~ 433 (616)
|+|+...-. .+.+|..+-.+
T Consensus 165 QvLe~E~~KC~SCNrlGq~sCLRCK 189 (314)
T PF06524_consen 165 QVLESETFKCQSCNRLGQYSCLRCK 189 (314)
T ss_pred hhhhcccccccccccccchhhhhee
Confidence 567665554 36666665554
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=76.19 E-value=7.3 Score=43.41 Aligned_cols=124 Identities=21% Similarity=0.155 Sum_probs=71.2
Q ss_pred ccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhh
Q 007146 27 LPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYP 106 (616)
Q Consensus 27 ~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~p 106 (616)
.+... .++|++|+.|..++|++..- +....|..++.|++ --||..|++|+.-+ +- |.-|.+
T Consensus 153 ~~~L~--d~d~~Vra~A~raLG~l~~~-------~a~~~L~~al~d~~------~~VR~aA~~al~~l---G~-~~A~~~ 213 (410)
T TIGR02270 153 EAALT--HEDALVRAAALRALGELPRR-------LSESTLRLYLRDSD------PEVRFAALEAGLLA---GS-RLAWGV 213 (410)
T ss_pred HHHhc--CCCHHHHHHHHHHHHhhccc-------cchHHHHHHHcCCC------HHHHHHHHHHHHHc---CC-HhHHHH
Confidence 34444 78899999999999998751 12233667788886 88999998887443 11 223333
Q ss_pred HHH--------------HHHhhcccccchhhHHHH------HHHHHHHhhhhcccc-chHHHHHHHHHHHHhccCCCCCC
Q 007146 107 LLQ--------------VIVGRIGYEDEENSILFE------LLSSVVGAANENVAD-HIPYIVSSLVAAISKHMHPSSEP 165 (616)
Q Consensus 107 lLq--------------~i~~~i~~ed~e~~~L~~------lL~tive~~~e~iap-~~~~l~~~la~~~~~~~~~~~~~ 165 (616)
+++ .+++..+.+. --..|.+ +-..++..-+.-=.| .++.|.+.+.. ++
T Consensus 214 l~~~~~~~g~~~~~~l~~~lal~~~~~-a~~~L~~ll~d~~vr~~a~~AlG~lg~p~av~~L~~~l~d----------~~ 282 (410)
T TIGR02270 214 CRRFQVLEGGPHRQRLLVLLAVAGGPD-AQAWLRELLQAAATRREALRAVGLVGDVEAAPWCLEAMRE----------PP 282 (410)
T ss_pred HHHHHhccCccHHHHHHHHHHhCCchh-HHHHHHHHhcChhhHHHHHHHHHHcCCcchHHHHHHHhcC----------cH
Confidence 332 3333343332 0001111 222334444444444 33555554443 44
Q ss_pred chHHHHHHHHHHHHH
Q 007146 166 WPQVVERGFAALALM 180 (616)
Q Consensus 166 ~pq~ve~~~~~l~a~ 180 (616)
|-++...+|+.++++
T Consensus 283 ~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 283 WARLAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHHHHhhCC
Confidence 899999999998883
No 50
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=74.96 E-value=3 Score=42.80 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHh
Q 007146 474 LQDCYASLMEAAVQ 487 (616)
Q Consensus 474 ln~~~~slLe~~~~ 487 (616)
..++.|+++.--.+
T Consensus 137 ~~~v~r~ilaEkpr 150 (279)
T COG5137 137 EEDVEREILAEKPR 150 (279)
T ss_pred HHHHHHHHhccCCc
Confidence 46777777655333
No 51
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=74.03 E-value=40 Score=37.44 Aligned_cols=111 Identities=26% Similarity=0.215 Sum_probs=75.6
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC-CC-CChhhHHHHH-Hhhccccc-chhhHHHHHHHHHHHhhh
Q 007146 62 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MP-PEWYPLLQVI-VGRIGYED-EENSILFELLSSVVGAAN 137 (616)
Q Consensus 62 ~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~-~p-~~~~plLq~i-~~~i~~ed-~e~~~L~~lL~tive~~~ 137 (616)
++-++|+|+..=+ + ..|||--|...|+.++++++ .+ ...+..++.+ .+-|+.=- --..-.|+.|+++.+--+
T Consensus 257 ~lp~lL~c~~~v~-e---~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p 332 (373)
T PF14911_consen 257 VLPSLLECLMLVN-E---EPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDP 332 (373)
T ss_pred hhHHHHHHHhhcC-C---CcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCH
Confidence 3445555554221 0 38999999999999999999 22 2334444433 33333222 222357999999999999
Q ss_pred hccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhh-hHHHHHHHHHH
Q 007146 138 ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQ-AAIAKAFSALL 216 (616)
Q Consensus 138 e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~-~~~~~~~stlL 216 (616)
+-|++-+|-|.+++.. +|+ +|..|- .++.++++.|+
T Consensus 333 ~lV~~Lip~i~q~l~~----------------~E~---------------------------kRG~G~d~~lR~~~~rL~ 369 (373)
T PF14911_consen 333 QLVISLIPTIRQSLKD----------------SER---------------------------KRGLGRDVALRKALSRLL 369 (373)
T ss_pred HHHHHHHHHHHHHHHH----------------HHH---------------------------HhcCCcCHHHHHHHHHHH
Confidence 9999999999999886 333 677776 67788888887
Q ss_pred HHh
Q 007146 217 QQA 219 (616)
Q Consensus 217 q~a 219 (616)
..+
T Consensus 370 ~~l 372 (373)
T PF14911_consen 370 SHL 372 (373)
T ss_pred Hhc
Confidence 654
No 52
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.64 E-value=37 Score=35.65 Aligned_cols=134 Identities=17% Similarity=0.222 Sum_probs=90.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCC-----ccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC-CCCChhhH
Q 007146 34 VCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPL 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~-----e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~-~p~~~~pl 107 (616)
+..+-.|+||-.++++.-.-+| ++-..-+..=....|.|.. -|+ .|..|+..|++..+ .+.....+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-------~~~-~~l~gl~~L~~~~~~~~~~~~~i 81 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-------CVQ-PALKGLLALVKMKNFSPESAVKI 81 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-------hHH-HHHHHHHHHHhCcCCChhhHHHH
Confidence 5677899999888877665444 3222333444455665552 233 34778889998877 45556688
Q ss_pred HHHHHhhccccc---chhhHHHHHHHHHHHhhhhccc----cchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHH
Q 007146 108 LQVIVGRIGYED---EENSILFELLSSVVGAANENVA----DHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 180 (616)
Q Consensus 108 Lq~i~~~i~~ed---~e~~~L~~lL~tive~~~e~ia----p~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~ 180 (616)
++.+++.+..-. ++.-..+++|.++++++.+.+. .|+.++++.+-+ |.=|+..-..|.-+-.+
T Consensus 82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g----------EkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG----------EKDPRNLLLSFKLLKVI 151 (262)
T ss_pred HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc----------CCCHHHHHHHHHHHHHH
Confidence 888888877655 5556679999999999987773 255555555544 66677777777777777
Q ss_pred HHHHh
Q 007146 181 AQSWE 185 (616)
Q Consensus 181 ~~~~~ 185 (616)
.+.|+
T Consensus 152 ~~~~~ 156 (262)
T PF14500_consen 152 LQEFD 156 (262)
T ss_pred HHhcc
Confidence 77666
No 53
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=72.87 E-value=14 Score=33.49 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=44.1
Q ss_pred cchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhh
Q 007146 82 PVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANE 138 (616)
Q Consensus 82 PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e 138 (616)
.||...|.+|+.+...+| |..|+-+++.+++.+.....-....+.+|..+.|-+.+
T Consensus 3 ~i~~kl~~~l~~i~~~~~-P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~ 58 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDW-PQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITD 58 (148)
T ss_dssp HHHHHHHHHHHHHHHHHT-TTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHC-hhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Confidence 478889999999999998 77999999999999888653323457777777776655
No 54
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=71.98 E-value=15 Score=45.00 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=89.6
Q ss_pred HHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhccccc--chh
Q 007146 45 WILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED--EEN 122 (616)
Q Consensus 45 w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed--~e~ 122 (616)
.++..|+.++|+ +-..+++.++-.|.-| ...||=.|..||+.|.-.+-.- -..-+.+.+.++.++-. +.-
T Consensus 159 d~lsr~g~ll~~-fh~~il~~l~~ql~s~------R~aVrKkai~~l~~la~~~~~~-ly~~li~~Ll~~L~~~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPN-FHLSILKCLLPQLQSP------RLAVRKKAITALGHLASSCNRD-LYVELIEHLLKGLSNRTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcc-hHHHHHHHHhhcccCh------HHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhccCCCCchHHH
Confidence 445556667776 5455555555555555 4889999999999997655433 45668889999988887 667
Q ss_pred hHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHH
Q 007146 123 SILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAAL 177 (616)
Q Consensus 123 ~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l 177 (616)
..++|.|.+|-...+.....|.+.++--+++ |+......+|-.-+---+||+++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~-y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVAD-YCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHH-HhcccccCcHHHHHHHHHHHHHH
Confidence 7889999999999999999999888877664 66555666665555544444443
No 55
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=71.34 E-value=7.7 Score=48.31 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=11.3
Q ss_pred HHHHHhhhhccChhhhhhHhhccC
Q 007146 397 VVLAISSCYLCYPAVVEGILKKDE 420 (616)
Q Consensus 397 LIlvIs~c~~ynP~lveqvLek~~ 420 (616)
|+..=..+=..+|...-|+|....
T Consensus 1140 ll~~K~~~SLa~PGE~VGvlAAQS 1163 (1640)
T KOG0262|consen 1140 LLQLKYIRSLADPGEPVGVLAAQS 1163 (1640)
T ss_pred HHHHHHHHHhcCCCCcceeeeecc
Confidence 333333344455555555555443
No 56
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.27 E-value=1.9 Score=50.12 Aligned_cols=15 Identities=27% Similarity=0.067 Sum_probs=8.2
Q ss_pred cccccccchhhHHHH
Q 007146 565 LGSLDEVDQLKVVAS 579 (616)
Q Consensus 565 ~~~ldevd~~~~Vls 579 (616)
...-||||...-+.+
T Consensus 453 ~~fPDEvdt~~d~~A 467 (754)
T KOG1980|consen 453 SEFPDEVDTPPDESA 467 (754)
T ss_pred hhCCCccccCCChHH
Confidence 345577766643333
No 57
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=70.16 E-value=5.3 Score=47.43 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=16.8
Q ss_pred HHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh
Q 007146 248 IILSVSERNVIEELKLSELLLVWADLIGDWHAWE 281 (616)
Q Consensus 248 il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~We 281 (616)
-|+.+||-+.- ....|+-...-..|-.....=+
T Consensus 550 flkeit~rs~~-~~~~s~~f~~ik~l~k~~~~re 582 (960)
T KOG1189|consen 550 FLKEITFRSSN-GKRSSEAFRQIKELQKRFKSRE 582 (960)
T ss_pred hhhheeeeecC-CcchHHHHHHHHHHHHHHHHHH
Confidence 45566665554 3333444444455555555544
No 58
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=70.15 E-value=3.4 Score=48.90 Aligned_cols=16 Identities=6% Similarity=0.218 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHhhhh
Q 007146 475 QDCYASLMEAAVQLKE 490 (616)
Q Consensus 475 n~~~~slLe~~~~lke 490 (616)
+++++++.+--..|-+
T Consensus 849 ~~ImKTI~dDP~~Ffe 864 (960)
T KOG1189|consen 849 TKIMKTITDDPIAFFE 864 (960)
T ss_pred HHHhhhhccCHHHHHh
Confidence 5555555444444433
No 59
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=70.07 E-value=5.8 Score=49.30 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=19.0
Q ss_pred chhh--HHHHHhhhhccChhh--hhhHhhccCCC
Q 007146 393 LWKP--VVLAISSCYLCYPAV--VEGILKKDEDG 422 (616)
Q Consensus 393 l~Kp--LIlvIs~c~~ynP~l--veqvLek~~~~ 422 (616)
++-| -+.+||.-=++.|.. ++...+-.++|
T Consensus 1149 La~PGE~VGvlAAQSIGEPSTQMTLNTFHfAGrG 1182 (1640)
T KOG0262|consen 1149 LADPGEPVGVLAAQSIGEPSTQMTLNTFHFAGRG 1182 (1640)
T ss_pred hcCCCCcceeeeecccCCCcceeehhheeecccc
Confidence 6666 677777666777753 55555555555
No 60
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=67.65 E-value=3.4 Score=39.64 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=8.9
Q ss_pred HHhhhhhcccccC
Q 007146 485 AVQLKEVQEDEEN 497 (616)
Q Consensus 485 ~~~lke~~deded 497 (616)
|++|+++.||...
T Consensus 1 MV~lteV~de~~~ 13 (137)
T PF04281_consen 1 MVKLTEVEDEHFQ 13 (137)
T ss_pred CCceEEecccccc
Confidence 4567777777666
No 61
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=66.69 E-value=4 Score=48.53 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=19.2
Q ss_pred cchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhccccc
Q 007146 82 PVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED 119 (616)
Q Consensus 82 PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed 119 (616)
-||-.|..-|..||-| +|.+=.-||-.+||.+|..+
T Consensus 319 ~vk~raL~ti~~lL~~--kPEqE~~LL~~lVNKlGDpq 354 (988)
T KOG2038|consen 319 EVKKRALKTIYDLLTN--KPEQENNLLVLLVNKLGDPQ 354 (988)
T ss_pred HHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHhcCCcc
Confidence 3555555555555543 45444555555666665555
No 62
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=66.55 E-value=2.1 Score=36.85 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=49.7
Q ss_pred hHHHHHHHHhhcccCccc--CCcchhHHHhhHHHHhhhhhcCCcc---ch-HHHHHHHHHHHhccCCCCCCcccchhhhh
Q 007146 15 SEFTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPED---IS-ADVYSSLLKALQMLDKGDTSCYPVRASAA 88 (616)
Q Consensus 15 ~~~~~~l~~~~V~P~~~~--~~~sp~LrA~A~w~~gela~~~~e~---~~-~~~~~sll~~l~dp~~~~~~~~PVRv~Aa 88 (616)
+.....++...++|.+.- ....+-++..|+|+++.++.-.++. .. ..+...+++.|.+++ ..||-.|.
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~------~~~~~~a~ 112 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSN------EDIQKNAT 112 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCC------HHHHHHHH
Confidence 334444554344443221 2456799999999999998743221 11 125777888888885 78999999
Q ss_pred HHHHHHH
Q 007146 89 GAIVGLL 95 (616)
Q Consensus 89 ~Ai~sll 95 (616)
.+|++|.
T Consensus 113 ~~l~~l~ 119 (120)
T cd00020 113 GALSNLA 119 (120)
T ss_pred HHHHHhh
Confidence 9998875
No 63
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=66.03 E-value=59 Score=31.58 Aligned_cols=105 Identities=14% Similarity=0.122 Sum_probs=72.8
Q ss_pred cchHHHHHHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCccc
Q 007146 3 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYP 82 (616)
Q Consensus 3 ~G~L~~~L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~P 82 (616)
.-+|.|...+++. .++..+ .+++..+. .++|.+|.+|.=++.+|..-----....++..++.++.|++ .-
T Consensus 9 i~~l~DL~~r~~~-~ve~~~-~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~------~~ 78 (178)
T PF12717_consen 9 IIALGDLCIRYPN-LVEPYL-PNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN------PE 78 (178)
T ss_pred HHHHHHHHHhCcH-HHHhHH-HHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC------HH
Confidence 3456666666543 333222 23334334 77899999999999888752111222346789999999997 88
Q ss_pred chhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcccc
Q 007146 83 VRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYE 118 (616)
Q Consensus 83 VRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~e 118 (616)
||..|...+..+...- .|..+...++.++.....-
T Consensus 79 Ir~~A~~~~~e~~~~~-~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR-NPNIIYNNFPELISSLNNC 113 (178)
T ss_pred HHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHhCc
Confidence 9999999999998875 5667888888877776553
No 64
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=65.82 E-value=19 Score=40.24 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=4.7
Q ss_pred HHHHHHHhc
Q 007146 457 AKVVERLLG 465 (616)
Q Consensus 457 ~svi~~Ll~ 465 (616)
.+|+++|.+
T Consensus 118 ~nv~srL~n 126 (432)
T PF09073_consen 118 NNVVSRLFN 126 (432)
T ss_pred HHHHHHHhc
Confidence 345556544
No 65
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=65.20 E-value=4 Score=50.52 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=8.3
Q ss_pred cccchhhHHHHHHHHHHH
Q 007146 525 DECEETEEEFLERYAKAA 542 (616)
Q Consensus 525 de~ee~e~e~le~~a~~A 542 (616)
++++|++++.+++.+.++
T Consensus 1755 dDddDdDdeD~d~~aea~ 1772 (3015)
T KOG0943|consen 1755 DDDDDDDDEDMDLDAEAA 1772 (3015)
T ss_pred cccccccccccccchhhh
Confidence 333344444455555444
No 66
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=64.66 E-value=3.4 Score=49.98 Aligned_cols=10 Identities=10% Similarity=0.265 Sum_probs=3.7
Q ss_pred HHHhhhhhhh
Q 007146 577 VASSIERYHN 586 (616)
Q Consensus 577 Vls~~~k~h~ 586 (616)
|...|-+-||
T Consensus 446 iI~RIrk~~h 455 (840)
T PF04147_consen 446 IIQRIRKCYH 455 (840)
T ss_pred HHHHHHHhCC
Confidence 3333334333
No 67
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.58 E-value=6.6 Score=47.66 Aligned_cols=48 Identities=21% Similarity=0.096 Sum_probs=31.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
.+.+.+|..|.+.+|++.. ..+...|+.+|.||+ .-||..|+.||+.+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~D~~------~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAA-------DVAVPALVEALTDPH------LDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccc-------cchHHHHHHHhcCCC------HHHHHHHHHHHhcc
Confidence 4556677777777766542 234567777777775 67777777777764
No 68
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=61.94 E-value=6.8 Score=45.76 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=17.8
Q ss_pred hHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhc
Q 007146 38 YLVASANWILGELASCLPEDISADVYSSLLKALQM 72 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~d 72 (616)
||.+----++| -|-|....-.+|+.+++-+.-
T Consensus 306 fl~~lQk~i~~---~~rpG~~~g~iY~~~~~yi~~ 337 (1001)
T COG5406 306 FLYMLQKYILG---LVRPGTDSGIIYSEAEKYISS 337 (1001)
T ss_pred HHHHHHHHHHh---hcCCCCCchhHHHHHHHHHHh
Confidence 44444444443 255666666677777666654
No 69
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=61.17 E-value=8.1 Score=40.28 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=11.0
Q ss_pred CCcccchhhHHHHHHHHH
Q 007146 523 EGDECEETEEEFLERYAK 540 (616)
Q Consensus 523 d~de~ee~e~e~le~~a~ 540 (616)
|+++.||++.+.+..+++
T Consensus 140 d~~ddeDd~~~Ll~ELek 157 (244)
T PF04889_consen 140 DDDDDEDDTAALLRELEK 157 (244)
T ss_pred cccccchHHHHHHHHHHH
Confidence 445555666777777644
No 70
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=60.76 E-value=2.8 Score=49.78 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=10.5
Q ss_pred hhccccchHHHHHHHHH
Q 007146 137 NENVADHIPYIVSSLVA 153 (616)
Q Consensus 137 ~e~iap~~~~l~~~la~ 153 (616)
..++-.||..+|--|.+
T Consensus 125 ~~k~yv~i~~v~~~lk~ 141 (713)
T PF03344_consen 125 PKKVYVHINEVCTELKA 141 (713)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEHHHHHHHHHh
Confidence 34455677777776654
No 71
>KOG4156 consensus Claspin, protein mediating phosphorylation and activation of Chk1 protein kinase in the DNA replication checkpoint response [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=60.43 E-value=20 Score=42.14 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=9.1
Q ss_pred ccccccccccchhh
Q 007146 562 DIELGSLDEVDQLK 575 (616)
Q Consensus 562 dee~~~ldevd~~~ 575 (616)
+.|.+.+|+|-+-+
T Consensus 1078 E~EE~~~DeV~~sD 1091 (1329)
T KOG4156|consen 1078 EYEEDVIDEVLPSD 1091 (1329)
T ss_pred hhhcccccccCCch
Confidence 44457888886655
No 72
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.90 E-value=16 Score=45.07 Aligned_cols=60 Identities=25% Similarity=0.080 Sum_probs=49.6
Q ss_pred cchhHHHhhHHHHhhhhhcCCc----cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCC
Q 007146 35 CLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM 100 (616)
Q Consensus 35 ~sp~LrA~A~w~~gela~~~~e----~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~ 100 (616)
+.|-||-=.|-++|+|=.=-++ .....++.-+...|+||- +=||++|++||++||.+..+
T Consensus 612 ~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~v------pEVRaAAVFALgtfl~~~~d 675 (1387)
T KOG1517|consen 612 PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPV------PEVRAAAVFALGTFLSNGSD 675 (1387)
T ss_pred ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCcc------HHHHHHHHHHHHHHhccccc
Confidence 4789999999999998752222 345569999999999995 77999999999999999754
No 73
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=59.66 E-value=5 Score=43.25 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=3.5
Q ss_pred HhhccCCC
Q 007146 415 ILKKDEDG 422 (616)
Q Consensus 415 vLek~~~~ 422 (616)
.|.|..+|
T Consensus 38 lL~kkdRG 45 (324)
T PF05285_consen 38 LLHKKDRG 45 (324)
T ss_pred hcCchhcC
Confidence 34444444
No 74
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.59 E-value=4.1e+02 Score=32.53 Aligned_cols=120 Identities=22% Similarity=0.405 Sum_probs=73.2
Q ss_pred chhHHHhhHHHHhhhhh----cCCcc---chH-HHHHHHHHHHhcc-CCCCCCcccchhhhhHHHHHHHhcCCCCCChhh
Q 007146 36 LPYLVASANWILGELAS----CLPED---ISA-DVYSSLLKALQML-DKGDTSCYPVRASAAGAIVGLLENDYMPPEWYP 106 (616)
Q Consensus 36 sp~LrA~A~w~~gela~----~~~e~---~~~-~~~~sll~~l~dp-~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~p 106 (616)
-|++-+++||.+--|+. ..+.. -+. ..|..+++.|.-- +..+-.+=-.|++|=.||..+|.++- ..-.|
T Consensus 461 ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st--~~vy~ 538 (859)
T KOG1241|consen 461 EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST--DDVYP 538 (859)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc--HHHHH
Confidence 46899999999999995 12222 122 4677777666422 11122245689999999999999874 34444
Q ss_pred HHH----HHHhh---------ccccc----ch-hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCC
Q 007146 107 LLQ----VIVGR---------IGYED----EE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHP 161 (616)
Q Consensus 107 lLq----~i~~~---------i~~ed----~e-~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~ 161 (616)
.++ .++.+ .+.+| +| -+.|..+|..|+.+.+. -++..+-+|-+-++|.+..
T Consensus 539 ~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~----~~~~~~d~iM~lflri~~s 607 (859)
T KOG1241|consen 539 MVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS----DIREVSDQIMGLFLRIFES 607 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc----cchhHHHHHHHHHHHHHcC
Confidence 444 44443 22233 11 24556777777777666 4555666666666666644
No 75
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=59.00 E-value=4.8 Score=51.42 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=7.4
Q ss_pred HHHHhhhhhhhhcccccc
Q 007146 576 VVASSIERYHNVIMQGQT 593 (616)
Q Consensus 576 ~Vls~~~k~h~~l~r~q~ 593 (616)
+|.+-+|--...-+.|-+
T Consensus 219 ~~~d~id~~~~~~~~~~~ 236 (2849)
T PTZ00415 219 DVFDKIDEAFETTEKGDG 236 (2849)
T ss_pred chhhhhhhhhcccccCCc
Confidence 344444444443344333
No 76
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.62 E-value=17 Score=41.79 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=67.5
Q ss_pred CCcchhHHHhhHHHHhhhhh----cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCC---hh
Q 007146 33 SVCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE---WY 105 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~----~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~---~~ 105 (616)
.+++..++-.|.|.+|-.|. |-|-.....+...||..+..++. +.-+-.+.-+|.+|-++..-||. ..
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-----~~~lRn~tW~LsNlcrgk~P~P~~~~v~ 236 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-----LSMLRNATWTLSNLCRGKNPSPPFDVVA 236 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-----hHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 46777999999999999997 44556666678888888888852 56777899999999999975555 57
Q ss_pred hHHHHHHhhcccccch
Q 007146 106 PLLQVIVGRIGYEDEE 121 (616)
Q Consensus 106 plLq~i~~~i~~ed~e 121 (616)
++||++...+-..|.+
T Consensus 237 ~iLp~L~~ll~~~D~~ 252 (514)
T KOG0166|consen 237 PILPALLRLLHSTDEE 252 (514)
T ss_pred HHHHHHHHHHhcCCHH
Confidence 8899999999988844
No 77
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=56.94 E-value=10 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.011 Sum_probs=15.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHhcCCCCC
Q 007146 443 LSLESEIKLAVLTLAKVVERLLGLGNPG 470 (616)
Q Consensus 443 l~~e~e~Kl~vl~L~svi~~Ll~~~~pg 470 (616)
|....++|=|-.+|-+ +.+....|
T Consensus 162 FV~fk~~~dA~~Al~~----~N~~~i~g 185 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEF----FNGNKIDG 185 (678)
T ss_pred EEEEeeHHHHHHHHHh----ccCceecC
Confidence 7777888888777755 44443444
No 78
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.91 E-value=8.2 Score=46.07 Aligned_cols=54 Identities=20% Similarity=0.152 Sum_probs=32.3
Q ss_pred CcchhHHHhhHHHHhhhhhcC---CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~---~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
-+.++++-+|-=++ +.|| ||+- .+++.+++..|-||+ .-+-..|.--|-.|+..
T Consensus 315 D~L~~vk~raL~ti---~~lL~~kPEqE-~~LL~~lVNKlGDpq------nKiaskAsylL~~L~~~ 371 (988)
T KOG2038|consen 315 DPLEEVKKRALKTI---YDLLTNKPEQE-NNLLVLLVNKLGDPQ------NKIASKASYLLEGLLAK 371 (988)
T ss_pred ccHHHHHHHHHHHH---HHHHhCCcHHH-HHHHHHHHHhcCCcc------hhhhhhHHHHHHHHHhh
Confidence 34557777765444 3333 4432 458888999999996 55545555555555443
No 79
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=1.3e+02 Score=36.71 Aligned_cols=193 Identities=21% Similarity=0.165 Sum_probs=109.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 113 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~ 113 (616)
.|.|-+||.|-=++ +++-=+..--=++.++=+|-+||. .=||=.||-||.-|-..+- .+-.+|+..|=.
T Consensus 119 DpN~LiRasALRvl---SsIRvp~IaPI~llAIk~~~~D~s------~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~ 187 (968)
T KOG1060|consen 119 DPNQLIRASALRVL---SSIRVPMIAPIMLLAIKKAVTDPS------PYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKK 187 (968)
T ss_pred CCcHHHHHHHHHHH---HhcchhhHHHHHHHHHHHHhcCCc------HHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHH
Confidence 57778887766554 443322222235778889999996 7799999999998855443 222244444333
Q ss_pred hcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007146 114 RIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVE 193 (616)
Q Consensus 114 ~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~ 193 (616)
....-. - -+++.+|-+|.|-+.-++=-|-.|- +.+++++|- .|.|+||| .+-.+-|+.-..-++...
T Consensus 188 LLaD~s----p--lVvgsAv~AF~evCPerldLIHkny-rklC~ll~d-vdeWgQvv-----lI~mL~RYAR~~l~~P~~ 254 (968)
T KOG1060|consen 188 LLADRS----P--LVVGSAVMAFEEVCPERLDLIHKNY-RKLCRLLPD-VDEWGQVV-----LINMLTRYARHQLPDPTV 254 (968)
T ss_pred HhcCCC----C--cchhHHHHHHHHhchhHHHHhhHHH-HHHHhhccc-hhhhhHHH-----HHHHHHHHHHhcCCCccc
Confidence 332222 1 2468889999888877776555553 457788754 56799999 344566776666665532
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHH
Q 007146 194 LDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELL 267 (616)
Q Consensus 194 ~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~ 267 (616)
.+...+.- | .+.|+...-..+-+|..-..|.--||+.+=--+.+.++.+=|-+-.+.
T Consensus 255 ~~~~~e~n--~---------------~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~ 311 (968)
T KOG1060|consen 255 VDSSLEDN--G---------------RSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLF 311 (968)
T ss_pred cccccccC--c---------------ccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHH
Confidence 22211000 1 223332222233344455566666666544444455554444433333
No 80
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=52.71 E-value=64 Score=39.06 Aligned_cols=112 Identities=22% Similarity=0.316 Sum_probs=69.0
Q ss_pred HHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC-CCCChhhHHH---------
Q 007146 40 VASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQ--------- 109 (616)
Q Consensus 40 rA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~-~p~~~~plLq--------- 109 (616)
+..|||++++|...+++.. ++..||..+.-+.|-.||+++. -....+.+|+
T Consensus 638 k~aANWl~~El~~~Lne~~-------------------i~~~~l~pe~LaeLv~lV~~g~IS~~~AK~VL~~m~~~~~~p 698 (771)
T PRK14703 638 VQLANWVVNDLAGLLRDRE-------------------LAALPFTPAALARLVALVDAGRISTRIAKDVLAELAASGGDP 698 (771)
T ss_pred HHHHHHHHHHHHHHHhcCC-------------------CccCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCCH
Confidence 5569999999998765541 1123444444444444444444 1111222222
Q ss_pred -HHHhhccccc-chhhHHHHHHHHHHHhhhhccccch---HHHHHHHHHHHHhccCCCCCCchHHHHH
Q 007146 110 -VIVGRIGYED-EENSILFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVER 172 (616)
Q Consensus 110 -~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~---~~l~~~la~~~~~~~~~~~~~~pq~ve~ 172 (616)
.|+++-+-.- +|.+.|-.++..|++.-.+.|.-|- .....-|.++++|-+.--- .|++|..
T Consensus 699 ~~IIee~GL~qisDe~~Le~iV~eVI~~NP~~Ve~yk~GK~kalgfLVGqVMK~tkGKA--dP~~V~e 764 (771)
T PRK14703 699 EAIVEAKGLEQVSDAGALEPIVEEVLAAHPDKVAAYRAGKTKLLGFFVGQVMRETGGKA--NPQQVRE 764 (771)
T ss_pred HHHHHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHhcchHHHHHHHHHHHHHHhCCCC--CHHHHHH
Confidence 4455544333 4445688999999999999999988 7888888898888886433 3566644
No 81
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=52.03 E-value=1.5e+02 Score=35.34 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=79.9
Q ss_pred HHHHhhcccccchhhHHHHHHHHHHHhhhhc---------------------cccchHHHHHHHHHHHHhccCCCCCCch
Q 007146 109 QVIVGRIGYEDEENSILFELLSSVVGAANEN---------------------VADHIPYIVSSLVAAISKHMHPSSEPWP 167 (616)
Q Consensus 109 q~i~~~i~~ed~e~~~L~~lL~tive~~~e~---------------------iap~~~~l~~~la~~~~~~~~~~~~~~p 167 (616)
.+++++++--+-+-+.-=.++..|.-+|+|. +-||.+.| +.++++++...| |
T Consensus 546 sri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~i----vStiL~~L~~k~---p 618 (975)
T COG5181 546 SRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMI----VSTILKLLRSKP---P 618 (975)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHH----HHHHHHHhcCCC---c
Confidence 3666666655533333445556666666654 44555544 456788886655 4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhh--------------hhHHHHHHHHHHHHhhcc----cCCCCcc
Q 007146 168 QVVERGFAALALMAQSWENFLREEVELDQSSGKWESG--------------QAAIAKAFSALLQQAWLT----HIQPLEC 229 (616)
Q Consensus 168 q~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G--------------~~~~~~~~stlLq~a~~~----p~~~~e~ 229 (616)
-|-++|...+..++...-.--..+ .++..| ...|++||+.|--..-.- |..++=+
T Consensus 619 ~vR~~aadl~~sl~~vlk~c~e~~-------~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP 691 (975)
T COG5181 619 DVRIRAADLMGSLAKVLKACGETK-------ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILP 691 (975)
T ss_pred cHHHHHHHHHHHHHHHHHhcchHH-------HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccc
Confidence 566677666666555443111111 022222 234688888887665554 5666667
Q ss_pred ccCCCCcccccHHHHHH----HHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh
Q 007146 230 EVSAPPSCIDDSSMLLR----SIILSVSERNVIEELKLSELLLVWADLIGDWHAWE 281 (616)
Q Consensus 230 ~~~P~~~~~~D~s~ll~----~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~We 281 (616)
++.||+ -+..+.+-. .+=.+|.....++..+ +-+.+-=.++....+|-
T Consensus 692 ~ltPIL--rnkh~Kv~~nti~lvg~I~~~~peyi~~r--EWMRIcfeLvd~Lks~n 743 (975)
T COG5181 692 SLTPIL--RNKHQKVVANTIALVGTICMNSPEYIGVR--EWMRICFELVDSLKSWN 743 (975)
T ss_pred cccHhh--hhhhHHHhhhHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHHHHHhh
Confidence 788865 333332222 1222333333444444 33344444445555555
No 82
>PF11942 Spt5_N: Spt5 transcription elongation factor, acidic N-terminal; InterPro: IPR022581 This is the very acidic N-terminal domain of the early transcription elongation factor Spt5 []. The Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The actual function of this N-terminal domain is not known although it is dispensable for binding to Spt4 [], nor is it essential for RNA polymerase II binding [].
Probab=50.65 E-value=8.5 Score=34.46 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=21.9
Q ss_pred hhhhhhhhccccccC-----cHHHHHHHH--Hhchhh
Q 007146 580 SIERYHNVIMQGQTL-----SSQLISKFL--KAYPQL 609 (616)
Q Consensus 580 ~~~k~h~~l~r~q~l-----p~~l~~~f~--~~~p~~ 609 (616)
..+++|+.+.|.+.. ...|.+.|+ +||...
T Consensus 39 ~~d~~~r~~d~~r~~~~~~dae~lae~~k~~~RY~~~ 75 (97)
T PF11942_consen 39 EDDRRHRRLDRRREMEEEEDAEELAEYLKLSERYARS 75 (97)
T ss_pred hhHhhhhhhhhhHHHHhccCHHHHHHHHHHHHHhccc
Confidence 456888877665444 678899998 999764
No 83
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=50.13 E-value=6e+02 Score=31.66 Aligned_cols=98 Identities=13% Similarity=0.080 Sum_probs=53.0
Q ss_pred ccchhhhhHHHHHHHhcCC-CCCChhhHHH---HHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHH
Q 007146 81 YPVRASAAGAIVGLLENDY-MPPEWYPLLQ---VIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAIS 156 (616)
Q Consensus 81 ~PVRv~Aa~Ai~sll~~~~-~p~~~~plLq---~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~ 156 (616)
+-||=++..++...-=+.+ .+.-..++.- ++++..+..+ +.-.|++++.+|+-.-++.|+|-.+.+.|.|-+-.-
T Consensus 507 LT~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~-e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~ 585 (947)
T COG5657 507 LTTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLE-EREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVE 585 (947)
T ss_pred HHHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhH-HHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHH
Confidence 4455555555544433332 2222222222 3344444433 444789999999999999999977777777665322
Q ss_pred hccCCCCCCchHHHHHHHHHHHHHH
Q 007146 157 KHMHPSSEPWPQVVERGFAALALMA 181 (616)
Q Consensus 157 ~~~~~~~~~~pq~ve~~~~~l~a~~ 181 (616)
.....+ ..|++.+.-|+++-|.+
T Consensus 586 ~~~knp--s~p~~~h~~fe~I~al~ 608 (947)
T COG5657 586 INAKNP--SNPQFAHYTFEDIGALV 608 (947)
T ss_pred HHccCC--ccHHHHHHHHHHHHHHH
Confidence 222222 23445544444444433
No 84
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=49.83 E-value=13 Score=43.58 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=17.0
Q ss_pred chh-hhhhhhHHHHHhhCCCcccc
Q 007146 341 PSA-TWRACSCVHTLLHVPKYSFE 363 (616)
Q Consensus 341 p~a-~~rAck~~h~vLh~~~~s~~ 363 (616)
+++ ..||||+.-.+|.....++-
T Consensus 8 ~dvDalcA~kiL~~Llk~d~I~~~ 31 (622)
T PF02724_consen 8 LDVDALCACKILTSLLKSDNIQYS 31 (622)
T ss_pred CChHHHHHHHHHHHHHHhcCCCee
Confidence 455 77899999888887775443
No 85
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=48.75 E-value=27 Score=23.98 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhc
Q 007146 39 LVASANWILGELASCLPEDISADVYSSLLKALQM 72 (616)
Q Consensus 39 LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~d 72 (616)
+|..|.|.+|++.. ..+...|+++|.|
T Consensus 1 VR~~Aa~aLg~igd-------~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGD-------PRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-S-------HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-------HHHHHHHHHHhcC
Confidence 58899999999987 5566777777654
No 86
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.02 E-value=7e+02 Score=31.91 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=54.8
Q ss_pred hhhHHHHhhhcccCc--ccccchhhccCCCCCCCCCCchhHHhhHHHHHHHHHH-hCchh-hhhhhhHHHHHhhCCCccc
Q 007146 287 SVFDCIKEIVNLHSK--YELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSA-TWRACSCVHTLLHVPKYSF 362 (616)
Q Consensus 287 ~~~d~i~e~v~~~~~--~g~~~F~~~~~~~~~a~p~~~~s~~~~i~~fvs~ai~-~~p~a-~~rAck~~h~vLh~~~~s~ 362 (616)
.+|+||-+|-+.+.+ .|- .| +...++. |++.... -.++. .-+||. +-++-|...-..
T Consensus 757 ~Af~lL~~i~~i~~~~d~g~-------------e~--~~~~lne---fl~~Isagl~gd~~~~~as~-Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 757 NAFALLVFIGAIQSSLDDGN-------------EP--ASAILNE---FLSIISAGLVGDSTRVVASD-IVAITHILQEFK 817 (1176)
T ss_pred hHHHHHHHHHHHHhhhcccc-------------cc--hHHHHHH---HHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHh
Confidence 468999999764332 331 12 2333332 5555555 35555 566665 444444443111
Q ss_pred cchhhHHhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHhhhhccChhhhhh
Q 007146 363 ETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEG 414 (616)
Q Consensus 363 ~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~KpLIlvIs~c~~ynP~lveq 414 (616)
+ ..-+.....+++....-|.+ ..-...|-=|.-|..+.|--|+...+
T Consensus 818 ~--~ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~ 864 (1176)
T KOG1248|consen 818 N--ILDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLS 864 (1176)
T ss_pred c--cccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHh
Confidence 1 34455666677777776654 22224444555566666666665544
No 87
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=48.01 E-value=1e+02 Score=37.85 Aligned_cols=206 Identities=16% Similarity=0.099 Sum_probs=103.8
Q ss_pred CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcccccchhhHH--HHHHHHH
Q 007146 55 PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL--FELLSSV 132 (616)
Q Consensus 55 ~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed~e~~~L--~~lL~ti 132 (616)
.++-...+-..+++.+.+++ -=+|-++|-+|..... --+|..|+.|+++|++.++. -+++++. .++|..+
T Consensus 84 ~e~~K~~IRe~Ll~~l~~sn------~ki~~~vay~is~Ia~-~D~Pd~WpElv~~i~~~l~~-~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 84 SEEVKALIREQLLNLLDDSN------SKIRSAVAYAISSIAA-VDYPDEWPELVPFILKLLSS-GNENSIHGAMRVLAEL 155 (1005)
T ss_pred cHHHHHHHHHHHHhhhhccc------cccchHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhc-cchhhhhhHHHHHHHH
Confidence 34556667788889999887 6778888888866554 45688999999999999986 3344443 4555444
Q ss_pred HHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHH
Q 007146 133 VGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAF 212 (616)
Q Consensus 133 ve~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~ 212 (616)
..---++-..+.+++.=.=-..+.++..++.. -+++ +.+++--|..|..=-..=++-+.+..-.--+.| +..|
T Consensus 156 ~~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~--~~~~--~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~---l~~~ 228 (1005)
T KOG2274|consen 156 SDEVDVEEMFFVGPVSLAEMYRIFALTIVYSI--ITRL--GAARGKLFTSCLTLITNVEEVWAEHVKVFLSQI---LNQF 228 (1005)
T ss_pred HHHHHHHHHhcccccchhhhhhhhhhccccch--hHHH--HhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHH
Confidence 43332222222211110000111122211111 1111 111122233333322221221111111223334 6888
Q ss_pred HHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhh
Q 007146 213 SALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWE 281 (616)
Q Consensus 213 stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~We 281 (616)
+.+|.+.-..+...-=+-..-+..|.++....|..++ +++....+++.|.+--.+++--..|.
T Consensus 229 ~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~------~~~~~~~~~~vw~~~~~~~~~yir~~ 291 (1005)
T KOG2274|consen 229 MDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLI------NPFMMGMFSIVWQTLEKILAVYVRES 291 (1005)
T ss_pred HHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhh------hHHHHhhhhHHHHHHHHHHhhhhhhh
Confidence 8888776665433100111222255555554444332 34445566777888888777777765
No 88
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.75 E-value=66 Score=32.37 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=81.3
Q ss_pred cccchhhhhHHHHHHHhcCCCCC--ChhhHHHHHHhhcccccchhhHH-HHHHHHHHHh-hhhccccchHHHHHHHHHHH
Q 007146 80 CYPVRASAAGAIVGLLENDYMPP--EWYPLLQVIVGRIGYEDEENSIL-FELLSSVVGA-ANENVADHIPYIVSSLVAAI 155 (616)
Q Consensus 80 ~~PVRv~Aa~Ai~sll~~~~~p~--~~~plLq~i~~~i~~ed~e~~~L-~~lL~tive~-~~e~iap~~~~l~~~la~~~ 155 (616)
++|+|+.-.+.=.. |+=...|. +.-++|+..+.++.+.+.--..+ .+-....+++ +++.|.|.+|.|+.-|-+.+
T Consensus 11 ~lP~~i~h~~~~~~-l~W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL 89 (183)
T PF10274_consen 11 DLPCRIDHGSVKNK-LQWKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL 89 (183)
T ss_pred CCCEEEECCCCCce-eEEecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 48999876644211 21111121 34578999999999988554444 6777888888 99999999999999988744
Q ss_pred HhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhh
Q 007146 156 SKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAW 220 (616)
Q Consensus 156 ~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~ 220 (616)
. ..-|.|+..++.+|..++.+ ...+|- ++...+.+||....
T Consensus 90 ~-------tr~~~V~~~~L~~Lq~Lv~~----------------~~~vG~-aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 90 N-------TRDPEVFCATLKALQQLVTS----------------SDMVGE-ALVPYYRQLLPVLN 130 (183)
T ss_pred h-------CCCHHHHHHHHHHHHHHHHh----------------hhhhhH-HHHHHHHHHHHHHH
Confidence 3 34588999999999888774 234563 56777777776655
No 89
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=47.31 E-value=11 Score=29.29 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=16.6
Q ss_pred ccCcccCCcchhHHHhhHHHHhhh
Q 007146 27 LPLYSVSVCLPYLVASANWILGEL 50 (616)
Q Consensus 27 ~P~~~~~~~sp~LrA~A~w~~gel 50 (616)
++... .+.+.+|.+|||.+|++
T Consensus 34 ~~~L~--d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 34 IPLLQ--DDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHTT--SSSHHHHHHHHHHHHCH
T ss_pred HHHHc--CCCHHHHHHHHHHHhcC
Confidence 35444 45569999999999975
No 90
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=47.27 E-value=3.6e+02 Score=28.31 Aligned_cols=204 Identities=18% Similarity=0.122 Sum_probs=118.8
Q ss_pred HHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHh
Q 007146 17 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLE 96 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~ 96 (616)
.+..++.+.|+|... .+.+-+|..|-=++|-++- ++..+..+-+.-+++++.. + +-+||+.|.-||.-++-
T Consensus 23 ~l~~ll~~lI~P~v~--~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~-~-----~~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 23 SLESLLDSLILPAVQ--SSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQK-D-----DEEVKITALKALFDLLL 93 (298)
T ss_pred hHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHHHH
Confidence 456889999999777 8888999999988987753 3556666666667777722 2 48999999999998876
Q ss_pred cCC----CC-------CChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHH-HHHHHHHHHhccCCCCC
Q 007146 97 NDY----MP-------PEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYI-VSSLVAAISKHMHPSSE 164 (616)
Q Consensus 97 ~~~----~p-------~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l-~~~la~~~~~~~~~~~~ 164 (616)
..- .. ..-..+++.+.+-+.+++.+ +...++|.+..=+......= ..-|+.=++.+..|.-+
T Consensus 94 ~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~------~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~ 167 (298)
T PF12719_consen 94 THGIDIFDSESDNDESVDSKSLLKILTKFLDSENPE------LQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTE 167 (298)
T ss_pred HcCchhccchhccCccchHhHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccC
Confidence 422 11 11234555555555555322 44455555554443322222 33333344555555555
Q ss_pred CchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHH
Q 007146 165 PWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSML 244 (616)
Q Consensus 165 ~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~l 244 (616)
..++.- -.|..|.+.+-++.+ -. |..+.++|.-.|+.+|..|-.-- .| .-.-+...+
T Consensus 168 ~~~~Lr----Q~L~~Ffp~y~~s~~-----------~~--Q~~l~~~f~~~l~~~~~~~~~~~----~~--~~~v~~~~v 224 (298)
T PF12719_consen 168 DNQRLR----QCLSVFFPVYASSSP-----------EN--QERLAEAFLPTLRTLSNAPDELD----SP--LAMVSPSQV 224 (298)
T ss_pred CcHHHH----HHHHHHHHHHHcCCH-----------HH--HHHHHHHHHHHHHHHHhCccccc----Cc--hhhCCHHHH
Confidence 544322 345566666555544 11 23347888888888887553200 11 122235666
Q ss_pred HHHHHHHccccchh
Q 007146 245 LRSIILSVSERNVI 258 (616)
Q Consensus 245 l~~il~~~t~~~~~ 258 (616)
.+.++.+++.....
T Consensus 225 ~~~lv~lt~~~~~~ 238 (298)
T PF12719_consen 225 ASFLVDLTDPSKLV 238 (298)
T ss_pred HHHHHHHCChhhcc
Confidence 66677666655444
No 91
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=46.95 E-value=12 Score=42.66 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=7.5
Q ss_pred hHHHHhhhcccCc
Q 007146 289 FDCIKEIVNLHSK 301 (616)
Q Consensus 289 ~d~i~e~v~~~~~ 301 (616)
+.|..-||+...+
T Consensus 170 l~yvsamv~vksr 182 (990)
T KOG1819|consen 170 LQYVSAMVPVKSR 182 (990)
T ss_pred HHhhhhcccccch
Confidence 5566666665553
No 92
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=46.74 E-value=12 Score=45.10 Aligned_cols=9 Identities=11% Similarity=0.021 Sum_probs=3.8
Q ss_pred cHHHHHHHH
Q 007146 595 SSQLISKFL 603 (616)
Q Consensus 595 p~~l~~~f~ 603 (616)
+..+.+.|.
T Consensus 136 ~~~l~~ll~ 144 (895)
T KOG2076|consen 136 APELRQLLG 144 (895)
T ss_pred CHHHHHHHH
Confidence 333444443
No 93
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=45.89 E-value=7 Score=42.53 Aligned_cols=42 Identities=31% Similarity=0.341 Sum_probs=24.5
Q ss_pred CcccccHHHHHHHHHHHcc------ccch-hhhhhHHHHHHHHHH-HHhh
Q 007146 235 PSCIDDSSMLLRSIILSVS------ERNV-IEELKLSELLLVWAD-LIGD 276 (616)
Q Consensus 235 ~~~~~D~s~ll~~il~~~t------~~~~-~~~~kis~l~~~wa~-~~~~ 276 (616)
++|.+..+.||+.|+.-+= |... .-+-.|++|=.+|.. |+++
T Consensus 1 ~~~~~~v~kvY~~VIeDVI~~vRe~F~~~GiDeqvL~eLk~lWe~Kl~qs 50 (348)
T KOG2652|consen 1 MASTNTVSKVYESVIEDVINNVREDFLENGIDEQVLSELKNLWETKLIQS 50 (348)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhh
Confidence 4678888888886554321 1111 234456778888864 4444
No 94
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.87 E-value=12 Score=41.54 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhhh
Q 007146 173 GFAALALMAQSWENFLR 189 (616)
Q Consensus 173 ~~~~l~a~~~~~~~~~~ 189 (616)
+.+.++.--+||.-.+.
T Consensus 11 a~~~~~~ete~~~~v~~ 27 (514)
T KOG3130|consen 11 AKARLEVETECRKKVDN 27 (514)
T ss_pred HHHHhHHHHHHHHHHhh
Confidence 33445555566665555
No 95
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=45.34 E-value=12 Score=46.06 Aligned_cols=16 Identities=13% Similarity=-0.085 Sum_probs=9.3
Q ss_pred HHHhhhhhhhhccccc
Q 007146 577 VASSIERYHNVIMQGQ 592 (616)
Q Consensus 577 Vls~~~k~h~~l~r~q 592 (616)
--+++.+.|....+-|
T Consensus 972 ~~~L~~~~~e~~~~~~ 987 (1128)
T KOG2051|consen 972 DEALLKAMHEKNPGFQ 987 (1128)
T ss_pred HHHHHHHHhhcCcccc
Confidence 4566666776655433
No 96
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=44.80 E-value=7.2 Score=46.84 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=0.0
Q ss_pred hhHHHHhhh
Q 007146 42 SANWILGEL 50 (616)
Q Consensus 42 ~A~w~~gel 50 (616)
++.=.+|..
T Consensus 84 ~~t~TlGti 92 (787)
T PF03115_consen 84 RATATLGTI 92 (787)
T ss_dssp ---------
T ss_pred EEEEEEEee
Confidence 333333333
No 97
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=44.78 E-value=7.5e+02 Score=32.80 Aligned_cols=110 Identities=18% Similarity=0.285 Sum_probs=63.3
Q ss_pred ccccchhhccCCCCCC-----CCCC-chhHHhhHHHHHHHHHHhCchhhhhhhhHHHHHhhCCCccccchhhHHhHHHHH
Q 007146 302 YELKNFIVRQMPPPPA-----PPVP-PQSIIEGIGAFLSEAILQYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISF 375 (616)
Q Consensus 302 ~g~~~F~~~~~~~~~a-----~p~~-~~s~~~~i~~fvs~ai~~~p~a~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f 375 (616)
|+.+..+.+..|+-.. ++.+ +..++.-+-+|++.-|...|+.. .-.| ..+|+....
T Consensus 367 ~~~~~~L~~~~p~~~~~~~~~s~~~~~~~~~~~l~~~i~~fI~~m~~~l-----------~~Lr--~~eed~~~~----- 428 (1691)
T PF11894_consen 367 YDFRSLLQRKIPRLTPENDSFSEFFNEEFFMRQLHSFIDSFISNMPDKL-----------RKLR--DREEDSLLS----- 428 (1691)
T ss_pred HHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHhhHHHh-----------hhhc--hhHHHHHHH-----
Confidence 6667777776664444 3333 44566666678888887777662 1222 112222221
Q ss_pred HHHHHHhhhhhcCCC--CCchhh---HHHHHhhhhccChhhhhhHhhccC--CC--chhhhHHHHH
Q 007146 376 SCAAFSRFRAIQSKP--SSLWKP---VVLAISSCYLCYPAVVEGILKKDE--DG--GFALWGSALA 432 (616)
Q Consensus 376 ~~~A~~rl~~~~s~~--~~l~Kp---LIlvIs~c~~ynP~lveqvLek~~--~~--gf~iWfs~La 432 (616)
...+.+.-.+.+ .+.-.+ +++.|+..|-..|+++...=.-.+ ++ ||-.|++...
T Consensus 429 ---~~~~~~~~~~~~~~~~~~~dlE~fl~~ia~~Y~~rPe~~~~FW~d~e~~s~l~gFl~wa~~~~ 491 (1691)
T PF11894_consen 429 ---SQTHQQEGEDPPDDISLRADLERFLLLIAYLYDGRPELALEFWSDPEVTSNLYGFLRWASDRN 491 (1691)
T ss_pred ---hHhhhhcCCCCCcccchhhhHHHHHHHHHHHHcCChHHHHHhCCCcccchhHhHHHHHHhhcC
Confidence 112222111111 233333 889999999999999998777655 33 7999996533
No 98
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.49 E-value=2e+02 Score=34.76 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=80.5
Q ss_pred hhcccCcccCCcchhHHHhhHHHHhhhhhcC---CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCC
Q 007146 24 SRVLPLYSVSVCLPYLVASANWILGELASCL---PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM 100 (616)
Q Consensus 24 ~~V~P~~~~~~~sp~LrA~A~w~~gela~~~---~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~ 100 (616)
+|++- .++++.--+|.|-|=++-.+.+|- |++.|-++..+++..+.|.. .-||..|+.||+-|=+....
T Consensus 88 ~hlLR--g~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre------p~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 88 YHLLR--GTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE------PNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHh--cccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC------chHHHHHHHHHHHHhcCCCC
Confidence 45544 336777789999999999988854 88999999999999999996 89999999999998764433
Q ss_pred CCChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHH
Q 007146 101 PPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 180 (616)
Q Consensus 101 p~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~ 180 (616)
| +.+ .++++.++++.-+- .-+-+.++..+-+.+-+.|-+|||+-.+=.|.
T Consensus 160 e-----------------e~~---v~n~l~~liqnDpS----------~EVRRaaLsnI~vdnsTlp~IveRarDV~~an 209 (892)
T KOG2025|consen 160 E-----------------ECP---VVNLLKDLIQNDPS----------DEVRRAALSNISVDNSTLPCIVERARDVSGAN 209 (892)
T ss_pred C-----------------ccc---HHHHHHHHHhcCCc----------HHHHHHHHHhhccCcccchhHHHHhhhhhHHH
Confidence 3 111 34444444433210 11222334445556667777777766555554
Q ss_pred HHH
Q 007146 181 AQS 183 (616)
Q Consensus 181 ~~~ 183 (616)
-++
T Consensus 210 Rrl 212 (892)
T KOG2025|consen 210 RRL 212 (892)
T ss_pred HHH
Confidence 443
No 99
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.45 E-value=34 Score=39.40 Aligned_cols=115 Identities=20% Similarity=0.265 Sum_probs=70.7
Q ss_pred HHHHHhhcccCccc---CCcchhHHHhhHHHHhhhhhcC----CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHH
Q 007146 19 ANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCL----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 91 (616)
Q Consensus 19 ~~l~~~~V~P~~~~---~~~sp~LrA~A~w~~gela~~~----~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai 91 (616)
.-++-...||-++- .++..++|.-|||+++....=. .-.+-++++.-|+..|..-+ +-.|..||-||
T Consensus 315 q~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e------f~~rKEAawaI 388 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE------FDIRKEAAWAI 388 (514)
T ss_pred HHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc------hHHHHHHHHHH
Confidence 33444444454432 3344489999999997665422 22466678999999998875 99999999999
Q ss_pred HHHHhcCCCCCChhhHHH------HHHhhcccccch-hhHHHHHHHHHHHhhhhccc
Q 007146 92 VGLLENDYMPPEWYPLLQ------VIVGRIGYEDEE-NSILFELLSSVVGAANENVA 141 (616)
Q Consensus 92 ~sll~~~~~p~~~~plLq------~i~~~i~~ed~e-~~~L~~lL~tive~~~e~ia 141 (616)
+++.-.+- | ++...|- .+.+...--|.. -...+..|+.|...+..+-.
T Consensus 389 sN~ts~g~-~-~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~ 443 (514)
T KOG0166|consen 389 SNLTSSGT-P-EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKN 443 (514)
T ss_pred HhhcccCC-H-HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99877666 3 3333332 455555444411 22235556666655555443
No 100
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=43.26 E-value=16 Score=43.31 Aligned_cols=8 Identities=38% Similarity=0.355 Sum_probs=4.2
Q ss_pred hhhHHHHH
Q 007146 446 ESEIKLAV 453 (616)
Q Consensus 446 e~e~Kl~v 453 (616)
-.|||+.+
T Consensus 150 ~lEKkl~~ 157 (822)
T KOG2141|consen 150 GLEKKLKI 157 (822)
T ss_pred hHHHHHhh
Confidence 35555554
No 101
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=42.40 E-value=42 Score=39.34 Aligned_cols=8 Identities=0% Similarity=0.177 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007146 476 DCYASLME 483 (616)
Q Consensus 476 ~~~~slLe 483 (616)
+.++.+|.
T Consensus 188 ~~~~~~l~ 195 (600)
T TIGR01651 188 RVVREMLR 195 (600)
T ss_pred HHHHHHHH
Confidence 33344333
No 102
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=42.03 E-value=8.5 Score=45.87 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=24.5
Q ss_pred ChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhc
Q 007146 103 EWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANEN 139 (616)
Q Consensus 103 ~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~ 139 (616)
.++.+|...+.+|.+...- +|--|..++...+-+
T Consensus 109 ~F~~~l~~~~~~~~~~~~k---~yv~i~~v~~~lk~~ 142 (713)
T PF03344_consen 109 EFRNFLSRCLARIQNNPKK---VYVHINEVCTELKAH 142 (713)
T ss_dssp HHHHHHHHHHHHHHH-CCC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCe---EEEEHHHHHHHHHhH
Confidence 5778888888888877733 777777777777654
No 103
>KOG3779 consensus Homeobox transcription factor prospero [Transcription]
Probab=41.86 E-value=54 Score=37.30 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhhhhhcccccCCCCC---ccccCCccccCCCCCCCCCCCCCcccchhhHHHHHHHH
Q 007146 475 QDCYASLMEAAVQLKEVQEDEENDEGD---DEEAEDKEDDNEESEDDDEDSEGDECEETEEEFLERYA 539 (616)
Q Consensus 475 n~~~~slLe~~~~lke~~dededEe~~---d~~~~~~~ee~eD~~ddd~~~d~de~ee~e~e~le~~a 539 (616)
+...+.+-+++.+.-+..+.+.+|+.+ |+|++++= ++|..|+-+++|+++|++...-|+++-.
T Consensus 247 ~~~~~~~QEK~~QN~dS~~~~~~e~~E~~eD~M~~~~i--~~~~~D~V~~Sd~~~~~~~~~~~i~r~r 312 (737)
T KOG3779|consen 247 QKQLRQLQEKFYQNYDSTDSENDEDGELSEDSMRSEIL--DARAQDSVGRSDNEMCELDPGQFIDRAR 312 (737)
T ss_pred HHHHHHHHHHHHhccccccccCCcccccccccccchhh--hccccchhcccchhcCCCChHHHHHHHH
Confidence 444444455565544444433333222 22222111 3334455557899999999999998854
No 104
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=41.09 E-value=39 Score=36.13 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC
Q 007146 449 IKLAVLTLAKVVERLLGLGNPG 470 (616)
Q Consensus 449 ~Kl~vl~L~svi~~Ll~~~~pg 470 (616)
.|+.+|.|+-+-.-|+.-+.++
T Consensus 5 ~~~~ll~ll~~p~~l~~~~~~~ 26 (285)
T PF03896_consen 5 SRLILLALLVFPATLLSFGGGS 26 (285)
T ss_pred hhHHHHHHHHHHHHHHccCCCC
Confidence 4667777766555556544443
No 105
>PHA02608 67 prohead core protein; Provisional
Probab=40.09 E-value=12 Score=32.64 Aligned_cols=11 Identities=45% Similarity=0.625 Sum_probs=5.7
Q ss_pred hhHHHHHHHHH
Q 007146 474 LQDCYASLMEA 484 (616)
Q Consensus 474 ln~~~~slLe~ 484 (616)
..+-|.++|+.
T Consensus 16 akK~F~~~Me~ 26 (80)
T PHA02608 16 AKKEFASIMEA 26 (80)
T ss_pred HHHHHHHHHHH
Confidence 35555555444
No 106
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=39.80 E-value=91 Score=36.78 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=68.9
Q ss_pred CCcchhHHHhhHHHHhhhhhcC-----CccchHHHHHHHHHHHhccCCCCCCcccchhhhh-HHHHHHHhcCC-----CC
Q 007146 33 SVCLPYLVASANWILGELASCL-----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAA-GAIVGLLENDY-----MP 101 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~-----~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa-~Ai~sll~~~~-----~p 101 (616)
..++-++..++.|++|++|.+. |+.-.--.-+..+.+|.|- |-|+.+. -++-+|++|-- .|
T Consensus 418 ~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~--------p~~~~ncsw~~~nlv~h~a~a~~~~~ 489 (858)
T COG5215 418 SDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC--------PFRSINCSWRKENLVDHIAKAVREVE 489 (858)
T ss_pred ccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc--------chHHhhhHHHHHhHHHhhhhhhcccc
Confidence 4556699999999999999843 5555555566666666664 5555543 35666766533 34
Q ss_pred CChhhHHHHH----Hh---hcccccchhhHHHHHHHHHHHhhhhccccchHHH
Q 007146 102 PEWYPLLQVI----VG---RIGYEDEENSILFELLSSVVGAANENVADHIPYI 147 (616)
Q Consensus 102 ~~~~plLq~i----~~---~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l 147 (616)
+-+.+.-.+| ++ .++||-+-...+|-+|+|.|+--..-|+|-+.++
T Consensus 490 S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~ 542 (858)
T COG5215 490 SFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGF 542 (858)
T ss_pred chhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4455544433 33 3555555556679999999987777666644433
No 107
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=39.73 E-value=9.7 Score=33.55 Aligned_cols=7 Identities=57% Similarity=0.667 Sum_probs=0.0
Q ss_pred hHHHHHH
Q 007146 531 EEEFLER 537 (616)
Q Consensus 531 e~e~le~ 537 (616)
|++.+.+
T Consensus 49 eee~m~r 55 (81)
T PF14812_consen 49 EEEPMPR 55 (81)
T ss_dssp -------
T ss_pred hcccccc
Confidence 4444443
No 108
>KOG3871 consensus Cell adhesion complex protein bystin [Extracellular structures]
Probab=39.64 E-value=37 Score=37.57 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=19.7
Q ss_pred ccccccchh-----hHHHHhhhhhhh-hccccccC
Q 007146 566 GSLDEVDQL-----KVVASSIERYHN-VIMQGQTL 594 (616)
Q Consensus 566 ~~ldevd~~-----~~Vls~~~k~h~-~l~r~q~l 594 (616)
.++-.+||. +-|.+.+.||.+ ++-+++-+
T Consensus 174 ~~~~~ldpkV~e~Y~~Vg~~lskyrsGKlPKaFKi 208 (449)
T KOG3871|consen 174 FPMPALDPKVIEMYEGVGSVLSKYRSGKLPKAFKI 208 (449)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcCCCchhhhc
Confidence 566677776 358889988876 66555443
No 109
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=39.20 E-value=27 Score=31.28 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=43.9
Q ss_pred CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCC--CCChhhHHHHHHhhccccc
Q 007146 55 PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM--PPEWYPLLQVIVGRIGYED 119 (616)
Q Consensus 55 ~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~--p~~~~plLq~i~~~i~~ed 119 (616)
-...+.++...+|+++.|+| -=||-.|.-||-.+...... .+.+..+...+.+.+..-|
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d------~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQD------SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34678889999999999997 88999999999999877652 1133444446666666665
No 110
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=39.10 E-value=8.8 Score=39.57 Aligned_cols=6 Identities=17% Similarity=0.196 Sum_probs=2.7
Q ss_pred HhhCCC
Q 007146 354 LLHVPK 359 (616)
Q Consensus 354 vLh~~~ 359 (616)
+|.+|+
T Consensus 95 ILlsc~ 100 (279)
T COG5137 95 ILLSCR 100 (279)
T ss_pred EEEEEe
Confidence 344444
No 111
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=38.27 E-value=39 Score=38.53 Aligned_cols=8 Identities=0% Similarity=-0.139 Sum_probs=3.2
Q ss_pred hhhccccc
Q 007146 585 HNVIMQGQ 592 (616)
Q Consensus 585 h~~l~r~q 592 (616)
|.+|.|.+
T Consensus 336 ~~eldRlR 343 (620)
T COG4547 336 EAELDRLR 343 (620)
T ss_pred HHHHHHHH
Confidence 33444433
No 112
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=38.19 E-value=15 Score=43.08 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=9.6
Q ss_pred HHHHHccccchhhhhhHHHHH
Q 007146 247 SIILSVSERNVIEELKLSELL 267 (616)
Q Consensus 247 ~il~~~t~~~~~~~~kis~l~ 267 (616)
..+|++|+-+.- --++|++.
T Consensus 595 qF~rsit~rS~~-g~rms~~f 614 (1001)
T COG5406 595 QFLRSITSRSIR-GNRMSDLF 614 (1001)
T ss_pred hhhhheeeeecc-CccHHHHH
Confidence 345666655443 33444444
No 113
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=37.84 E-value=3.4e+02 Score=34.83 Aligned_cols=312 Identities=17% Similarity=0.161 Sum_probs=162.4
Q ss_pred chhHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC---------CCCChh
Q 007146 36 LPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY---------MPPEWY 105 (616)
Q Consensus 36 sp~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~---------~p~~~~ 105 (616)
++..+-+|-=++.+|+.+. +|.-.-.|+==++.++.||. --||+.|--+|+.+|-.=. .|.=+.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~------a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlf 509 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSE------ADVRATALETLTELLALVRDIPPSDANIFPEYLF 509 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCch------HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhh
Confidence 4466778888899999854 88888889999999999996 6799999999998876543 222223
Q ss_pred hHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 007146 106 PLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 185 (616)
Q Consensus 106 plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~ 185 (616)
|-|+-+...- . +++| -+.||..|. .||.++.||+ -+.|...
T Consensus 510 P~L~~l~~d~---~----------~~~v------RiayAsnla-~LA~tA~rFl-------------------e~~q~~~ 550 (1431)
T KOG1240|consen 510 PHLNHLLNDS---S----------AQIV------RIAYASNLA-QLAKTAYRFL-------------------ELTQELR 550 (1431)
T ss_pred hhhHhhhccC---c----------ccee------hhhHHhhHH-HHHHHHHHHH-------------------HHHHHHH
Confidence 3333222111 0 0011 012333332 3566666665 2222211
Q ss_pred hh--hhhhhhccc--cchhhhhhh--hHHHHHHHH------------HHHHhhcccC------CCCccccCCCC-ccccc
Q 007146 186 NF--LREEVELDQ--SSGKWESGQ--AAIAKAFSA------------LLQQAWLTHI------QPLECEVSAPP-SCIDD 240 (616)
Q Consensus 186 ~~--~~d~~~~~~--~~~~~a~G~--~~~~~~~st------------lLq~a~~~p~------~~~e~~~~P~~-~~~~D 240 (616)
.. ..+.+.+.. ....+..+. -+|.+.+++ |||+ +.|+ .+--..+++.+ ++.||
T Consensus 551 ~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~--i~~LC~FFGk~ksND~iLshLiTfLND 628 (1431)
T KOG1240|consen 551 QAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLES--IIPLCVFFGKEKSNDVILSHLITFLND 628 (1431)
T ss_pred hcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH--HHHHHHHhhhcccccchHHHHHHHhcC
Confidence 11 111111111 111111111 122233333 3444 4443 23336778877 88888
Q ss_pred HHHHHH-HHHHHccccchhhhhh-HHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhhcccC--cccccchhhccCCCCC
Q 007146 241 SSMLLR-SIILSVSERNVIEELK-LSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVNLHS--KYELKNFIVRQMPPPP 316 (616)
Q Consensus 241 ~s~ll~-~il~~~t~~~~~~~~k-is~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~--~~g~~~F~~~~~~~~~ 316 (616)
=.--|+ ....++++.+.++..+ +|+.+ =|+|.....+=||.==.+|+.++.-+.-++. +.-...++..-.|- -
T Consensus 629 kDw~LR~aFfdsI~gvsi~VG~rs~seyl--lPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~Pl-L 705 (1431)
T KOG1240|consen 629 KDWRLRGAFFDSIVGVSIFVGWRSVSEYL--LPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPL-L 705 (1431)
T ss_pred ccHHHHHHHHhhccceEEEEeeeeHHHHH--HHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhh-e
Confidence 876676 5567778777777666 66655 5788888887665555566666666644443 32222233221111 1
Q ss_pred CCCCCchhHHhhHHHHHHHHHHhCchhhhhhhhHHHHH----hhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCC
Q 007146 317 APPVPPQSIIEGIGAFLSEAILQYPSATWRACSCVHTL----LHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSS 392 (616)
Q Consensus 317 a~p~~~~s~~~~i~~fvs~ai~~~p~a~~rAck~~h~v----Lh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~ 392 (616)
..|+ .=|-..+.+||-.+..+..++ -+=|+++-.+ ....-.-.-.++...-+.++..+-.|+++.+-+.....
T Consensus 706 ~hPN--~WIR~~~~~iI~~~~~~ls~a-dvyc~l~P~irpfl~~~v~~i~s~~~LlsclkpPVsRsv~~~l~r~~~ens~ 782 (1431)
T KOG1240|consen 706 CHPN--LWIRRAVLGIIAAIARQLSAA-DVYCKLMPLIRPFLERPVIQIESKEVLLSCLKPPVSRSVFNQLLRWSDENSS 782 (1431)
T ss_pred eCch--HHHHHHHHHHHHHHHhhhhhh-hheEEeehhhHHhhhccHhhhcchHHHHHHhcCCCcHHHHHHHHHHhhcchH
Confidence 1331 112222223333333333333 2334444321 11111111144566667778888888888664444555
Q ss_pred chhhHHHH
Q 007146 393 LWKPVVLA 400 (616)
Q Consensus 393 l~KpLIlv 400 (616)
+||.++..
T Consensus 783 f~k~l~~~ 790 (1431)
T KOG1240|consen 783 FWKKLLER 790 (1431)
T ss_pred HHHHHHHH
Confidence 88886654
No 114
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=37.70 E-value=47 Score=22.78 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=21.5
Q ss_pred hhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhcc
Q 007146 37 PYLVASANWILGELASCLPEDISADVYSSLLKALQML 73 (616)
Q Consensus 37 p~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp 73 (616)
+++|..|.|.+|++.+ ..+...|+++|.|+
T Consensus 1 ~~vR~~aa~aLg~~~~-------~~a~~~L~~~l~d~ 30 (30)
T smart00567 1 PLVRHEAAFALGQLGD-------EEAVPALIKALEDE 30 (30)
T ss_pred CHHHHHHHHHHHHcCC-------HhHHHHHHHHhcCC
Confidence 3689999999999853 23456677777664
No 115
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=37.67 E-value=72 Score=31.68 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=63.2
Q ss_pred ccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcccccchhhHH-HHHHHHHHHhhhhccccchHHHHHHHHHHHHhcc
Q 007146 81 YPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL-FELLSSVVGAANENVADHIPYIVSSLVAAISKHM 159 (616)
Q Consensus 81 ~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed~e~~~L-~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~ 159 (616)
+++|=.|=.-+-+||+.+...-++..++..+..+++. +.|-.+| ...|..++....+.+.+++-.|+..+-.++.+-+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~ 119 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKL 119 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccC
Confidence 8899999999999999988777899999999999988 5565555 7788899999999999999999999888777555
No 116
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=37.66 E-value=37 Score=41.38 Aligned_cols=51 Identities=25% Similarity=0.131 Sum_probs=42.8
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
.+.|.+|..|+=.+|++.. ..+...|+++|.|++ ..||..|+.||+.+.+.
T Consensus 632 D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d------~~VR~~Aa~aL~~l~~~ 682 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGA------AAVRRAAAEGLRELVEV 682 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhc
Confidence 7888999999988888752 336788899999996 89999999999988653
No 117
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.13 E-value=35 Score=40.90 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=19.6
Q ss_pred hhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHH
Q 007146 424 FALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERL 463 (616)
Q Consensus 424 f~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~L 463 (616)
+.+|-+.+..-+-+... .+.+.-+.+..+|.+.|.+.
T Consensus 797 ~l~W~~~il~~hG~~~~---~~~~~~~~~~~~lqk~i~r~ 833 (893)
T KOG0291|consen 797 YLRWLRAILTYHGSSLK---RRAETLLPALTSLQKSIVRH 833 (893)
T ss_pred HHHHHHHHHHHhhhhhh---ccceehhhHHHHHHHHHHHH
Confidence 67788887763332221 11233344456666666664
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=36.75 E-value=36 Score=30.48 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=49.4
Q ss_pred HHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCcc---chHHHHHHHHHHHhccCCCCCCcccchhh
Q 007146 10 LREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPED---ISADVYSSLLKALQMLDKGDTSCYPVRAS 86 (616)
Q Consensus 10 L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~---~~~~~~~sll~~l~dp~~~~~~~~PVRv~ 86 (616)
|.+.-..|+..++ .-||.-|+ ...+=+|..||=.+.+++....+. .|..+|..+.+.+.||+ .=||-.
T Consensus 17 l~~~~~~~l~~Il-~pVL~~~~--D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d------~~Vr~~ 87 (97)
T PF12755_consen 17 LGKDISKYLDEIL-PPVLKCFD--DQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD------ENVRSA 87 (97)
T ss_pred chHhHHHHHHHHH-HHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------hhHHHH
Confidence 4443333444433 45666565 777889999999999988744332 68999999999999997 557765
Q ss_pred hh
Q 007146 87 AA 88 (616)
Q Consensus 87 Aa 88 (616)
|.
T Consensus 88 a~ 89 (97)
T PF12755_consen 88 AE 89 (97)
T ss_pred HH
Confidence 53
No 119
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=36.55 E-value=29 Score=40.04 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=7.8
Q ss_pred hhhhHHHHHhhccC
Q 007146 424 FALWGSALAFLCSS 437 (616)
Q Consensus 424 f~iWfs~La~v~~s 437 (616)
...||+++.....+
T Consensus 190 ~Nt~~s~m~a~~~~ 203 (555)
T KOG2393|consen 190 MNTWFSLMEAGNSD 203 (555)
T ss_pred HHHHHHHHHHhccc
Confidence 44566666654444
No 120
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=36.28 E-value=1.6e+02 Score=39.70 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=45.3
Q ss_pred hHHHhhHHHHhhhhhcCCccchHH-----HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 38 YLVASANWILGELASCLPEDISAD-----VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~~e~~~~~-----~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
=.+..|+|.++.++++..+.+... +-..|++.|.+++ .-|+-.|+.||.+++.+..
T Consensus 666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d------~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS------IEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC------hHHHHHHHHHHHHHHcCch
Confidence 578889999999998776654332 5667888888875 8899999999999999875
No 121
>PF07093 SGT1: SGT1 protein; InterPro: IPR010770 This family consists of several eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known to suppress GCR2 and is highly expressed in the muscle and heart. The function of this family is unknown although it has been speculated that SGT1 may be functionally analogous to the Gcr2p protein of Saccharomyces cerevisiae which is known to be a regulatory factor of glycolytic gene expression [].
Probab=35.81 E-value=87 Score=36.55 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhh
Q 007146 477 CYASLMEAAVQLK 489 (616)
Q Consensus 477 ~~~slLe~~~~lk 489 (616)
-|-+.|..++++.
T Consensus 480 ~F~~~l~~~Lg~~ 492 (589)
T PF07093_consen 480 EFLKMLREMLGLP 492 (589)
T ss_pred HHHHHHHHHcCCC
Confidence 3344444455444
No 122
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=35.42 E-value=16 Score=43.09 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=3.9
Q ss_pred hhhhHHHH
Q 007146 424 FALWGSAL 431 (616)
Q Consensus 424 f~iWfs~L 431 (616)
|.+|-.|.
T Consensus 402 Feikd~M~ 409 (811)
T KOG4364|consen 402 FEIKDQMG 409 (811)
T ss_pred chhhcccc
Confidence 55555443
No 123
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=35.22 E-value=24 Score=39.11 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.3
Q ss_pred hHHHHhh
Q 007146 575 KVVASSI 581 (616)
Q Consensus 575 ~~Vls~~ 581 (616)
+|.+++|
T Consensus 374 evE~~RI 380 (542)
T KOG0699|consen 374 EVETNRI 380 (542)
T ss_pred HHHHHHH
Confidence 3444444
No 124
>PF04874 Mak16: Mak16 protein C-terminal region; InterPro: IPR006958 The function of these proteins is unknown. The yeast orthologues have been implicated in cell cycle progression and biogenesis of 60S ribosomal subunits. The Schistosoma mansoni (Blood fluke) Mak16 has been shown to target protein transport to the nucleolus [].
Probab=34.41 E-value=42 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=13.1
Q ss_pred HHHHhcCCCCCC---chhhHHHHHHHHHHH
Q 007146 460 VERLLGLGNPGS---SLLQDCYASLMEAAV 486 (616)
Q Consensus 460 i~~Ll~~~~pg~---~~ln~~~~slLe~~~ 486 (616)
+++ +.+|.=|. ++-.++|...|+...
T Consensus 31 LeR-Lk~G~Ygd~~yN~~~~~~~k~le~~~ 59 (101)
T PF04874_consen 31 LER-LKSGTYGDIPYNFPEEAFNKVLEEEE 59 (101)
T ss_pred HHH-HHcCCccccccccCHHHHHHHHHHHh
Confidence 444 44444444 345666766555443
No 125
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=33.74 E-value=2e+02 Score=30.93 Aligned_cols=79 Identities=16% Similarity=0.332 Sum_probs=55.2
Q ss_pred hhhHHHHHHhhcccc--cchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Q 007146 104 WYPLLQVIVGRIGYE--DEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 181 (616)
Q Consensus 104 ~~plLq~i~~~i~~e--d~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~ 181 (616)
++||+.+++.--.+- +-=.+-.+.++++||.+.++.+.+++|.|..++-...+..+..+.+.-|-.-..=|.=|-++.
T Consensus 69 i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~ 148 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAIN 148 (319)
T ss_dssp HHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHH
Confidence 456777665542211 101112899999999999999999999999999999999988888877775544444444444
Q ss_pred H
Q 007146 182 Q 182 (616)
Q Consensus 182 ~ 182 (616)
+
T Consensus 149 ~ 149 (319)
T PF08767_consen 149 E 149 (319)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=33.64 E-value=59 Score=37.52 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=68.5
Q ss_pred ccchHHHHHHhh-ChHHHHHHHHhhcccCcccCCcch--hHHHhhHHHHhhhhh---c--CCccchHHHHHHHHHHHhcc
Q 007146 2 AYGGLQEFLREQ-KSEFTANLVRSRVLPLYSVSVCLP--YLVASANWILGELAS---C--LPEDISADVYSSLLKALQML 73 (616)
Q Consensus 2 a~G~L~~~L~~~-~~~~~~~l~~~~V~P~~~~~~~sp--~LrA~A~w~~gela~---~--~~e~~~~~~~~sll~~l~dp 73 (616)
|.|.|.++|.-. +....+.+-..-+ -+...+.+-+ -++=|||.++|-|-. + -+...--.+|+.+++.+++-
T Consensus 507 aLgnllQvlq~i~~~~~~e~~~~~~~-~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~ 585 (728)
T KOG4535|consen 507 ALGNLLQFLQPIEKPTFAEIIEESIQ-ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSC 585 (728)
T ss_pred HHhhHHHHHHHhhhccHHHHHHHHHH-hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHh
Confidence 457777787733 3333333333111 1111111111 589999999998764 2 24444567899999999887
Q ss_pred CCCCCCcccchhhhhHHHHHHH-hcCC---CCCChhhHHHHHHhhccccc
Q 007146 74 DKGDTSCYPVRASAAGAIVGLL-ENDY---MPPEWYPLLQVIVGRIGYED 119 (616)
Q Consensus 74 ~~~~~~~~PVRv~Aa~Ai~sll-~~~~---~p~~~~plLq~i~~~i~~ed 119 (616)
. -.-||+.||+||.--= +.+| -|=.|.-++.+++..+.-++
T Consensus 586 ~-----NFKVRi~AA~aL~vp~~re~~~d~~~Lsw~~lv~aLi~s~~~v~ 630 (728)
T KOG4535|consen 586 K-----NFKVRIRAAAALSVPGKREQYGDQYALSWNALVTALQKSEDTID 630 (728)
T ss_pred c-----cceEeehhhhhhcCCCCcccchhHHhHHHHHHHHHHHHHHHHHH
Confidence 5 5889999999985321 1122 45578888888877766555
No 127
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.51 E-value=88 Score=38.02 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=43.9
Q ss_pred CCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHH-------HHhcCC
Q 007146 33 SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG-------LLENDY 99 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~s-------ll~~~~ 99 (616)
..++||+|-.|.=.+-+|++.-+++-- .+-..+=+.|+|.. .-|=-+|++|--+ ||+-.|
T Consensus 153 ~D~s~yVRk~AA~AIpKLYsLd~e~k~-qL~e~I~~LLaD~s------plVvgsAv~AF~evCPerldLIHkny 219 (968)
T KOG1060|consen 153 TDPSPYVRKTAAHAIPKLYSLDPEQKD-QLEEVIKKLLADRS------PLVVGSAVMAFEEVCPERLDLIHKNY 219 (968)
T ss_pred cCCcHHHHHHHHHhhHHHhcCChhhHH-HHHHHHHHHhcCCC------CcchhHHHHHHHHhchhHHHHhhHHH
Confidence 578999999999999999987766654 67777778888885 4454556666543 555555
No 128
>PF04050 Upf2: Up-frameshift suppressor 2 ; InterPro: IPR007193 This entry represents Up-frameshift suppressor 2 (also known as Nonsense-mediated mRNA decay protein 2). Transcripts harbouring premature signals for translation termination are recognised and rapidly degraded by eukaryotic cells through a pathway known as nonsense-mediated mRNA decay. In Saccharomyces cerevisiae, three trans-acting factors (Upf1 to Upf3) are required for nonsense-mediated mRNA decay [].; PDB: 2WJV_D.
Probab=33.17 E-value=14 Score=36.14 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=3.3
Q ss_pred hHHHHhh
Q 007146 575 KVVASSI 581 (616)
Q Consensus 575 ~~Vls~~ 581 (616)
+.+...+
T Consensus 71 kmm~eS~ 77 (170)
T PF04050_consen 71 KMMAESL 77 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 129
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=32.90 E-value=21 Score=37.74 Aligned_cols=15 Identities=20% Similarity=0.332 Sum_probs=9.6
Q ss_pred HHHHHhhhhccChhh
Q 007146 397 VVLAISSCYLCYPAV 411 (616)
Q Consensus 397 LIlvIs~c~~ynP~l 411 (616)
-+.+|.-.++|-|..
T Consensus 89 ALeQIde~Ll~Wp~~ 103 (303)
T KOG3064|consen 89 ALEQIDEQLLYWPKY 103 (303)
T ss_pred HHHHHHHHHhcchHH
Confidence 456667677776663
No 130
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=31.54 E-value=96 Score=30.59 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=59.1
Q ss_pred ccchhhhhHHHHHHHhcC---CCCCChhhHHH----HHHhhcccccc-hhhHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 007146 81 YPVRASAAGAIVGLLEND---YMPPEWYPLLQ----VIVGRIGYEDE-ENSILFELLSSVVGAANENVADHIPYIVSSLV 152 (616)
Q Consensus 81 ~PVRv~Aa~Ai~sll~~~---~~p~~~~plLq----~i~~~i~~ed~-e~~~L~~lL~tive~~~e~iap~~~~l~~~la 152 (616)
-=.|+.|---|++++... ..++.+.+.|. .+.+.+.+.=+ =+.-...+++.++...+.++.||+..+...|-
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 457899999999999988 33444444444 33333332221 01112778889999999998888777776655
Q ss_pred HHHHhccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 007146 153 AAISKHMHPSSEPWPQVVERGFAALALMAQSWE 185 (616)
Q Consensus 153 ~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~ 185 (616)
. .+ -++-..+.+.|-.+|.++++...
T Consensus 101 ~----~~---~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 101 K----KL---GDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp H----GG---G---HHHHHHHHHHHHHHHTTS-
T ss_pred H----HH---ccccHHHHHHHHHHHHHHHHHCC
Confidence 4 32 23456788888888888888665
No 131
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=31.53 E-value=16 Score=44.10 Aligned_cols=11 Identities=9% Similarity=0.507 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 007146 124 ILFELLSSVVG 134 (616)
Q Consensus 124 ~L~~lL~tive 134 (616)
.+.|...++|+
T Consensus 322 ~iw~v~~~~v~ 332 (787)
T PF03115_consen 322 TIWQVVDTAVD 332 (787)
T ss_dssp -----------
T ss_pred eEEEEccchhh
Confidence 34455454443
No 132
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.45 E-value=3.6e+02 Score=27.50 Aligned_cols=86 Identities=29% Similarity=0.307 Sum_probs=51.1
Q ss_pred HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCc
Q 007146 149 SSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLE 228 (616)
Q Consensus 149 ~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e 228 (616)
..+-.=+++.+|-+-=+| |+++.....-|.+.+-. .++|.++|...-.
T Consensus 74 ~~~LK~~~~rLP~~~v~~--------------~~~Y~~F~~~E~~~~~p-----------~~aF~~~l~~~~~------- 121 (198)
T cd04401 74 ILVLKWIWSRLPGSKVIW--------------WEVYEEFKARERRSNYP-----------ADAFLDLLPQCLS------- 121 (198)
T ss_pred HHHHHHHHHHCCCCccCC--------------HHHHHHHHHHHHhcCCc-----------HHHHHHHHhhccC-------
Confidence 333445677788777777 34444444422222222 2578888754322
Q ss_pred cccCCCC--cccccHHHHHHHHHHHccccchhhhhhHHHHHHHHH
Q 007146 229 CEVSAPP--SCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWA 271 (616)
Q Consensus 229 ~~~~P~~--~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa 271 (616)
|+. +++-|.-+||-.|...-.... .-..||+.+-..|+
T Consensus 122 ----~~a~~~il~~ffdlL~~Iaa~s~~N~-ms~~kLs~~fg~wa 161 (198)
T cd04401 122 ----SPAHASILYDFFDLLSSIAAHSSVNG-MSGRKLSKMAGPWA 161 (198)
T ss_pred ----ChhhHHHHHHHHHHHHHHHHhcCccC-CcHhHHHHHhhHHH
Confidence 222 777888888888888755444 44788888876664
No 133
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=31.06 E-value=2.5e+02 Score=33.11 Aligned_cols=113 Identities=18% Similarity=0.201 Sum_probs=75.2
Q ss_pred ccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhccccc-chhhHHHHHHHHHHH
Q 007146 56 EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVG 134 (616)
Q Consensus 56 e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive 134 (616)
|-++..++-+++.+..|.. --||=.|..|+.++.++--. --..-+|+-+...+...- -.....+++|...++
T Consensus 211 EPyiv~~lp~il~~~~d~~------~~Vr~Aa~~a~kai~~~~~~-~aVK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKI------NKVREAAVEAAKAIMRCLSA-YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CchHHhhHHHHHHHhhccc------hhhhHHHHHHHHHHHHhcCc-chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3466778889999999985 66898888888888875432 244555565555555443 344567888888888
Q ss_pred hhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Q 007146 135 AANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 182 (616)
Q Consensus 135 ~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~ 182 (616)
..+..+.-+.|.|+..|...+- |+=|.|-++|.++|..+..
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~-------DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLW-------DTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHc-------cCCHHHHHHHHHHHHHHHH
Confidence 8888887788888887776322 3334555454444444443
No 134
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=30.08 E-value=32 Score=39.89 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHH----hcCCCCCCch
Q 007146 447 SEIKLAVLTLAKVVERL----LGLGNPGSSL 473 (616)
Q Consensus 447 ~e~Kl~vl~L~svi~~L----l~~~~pg~~~ 473 (616)
.+.|..+-.+.+|++-. .+-+|+|+.+
T Consensus 132 ~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaF 162 (678)
T KOG0127|consen 132 PDLKNVFSNFGKVVEIVIPRKKDGKLCGFAF 162 (678)
T ss_pred HHHHHHHhhcceEEEEEcccCCCCCccceEE
Confidence 36666666666554432 2236667643
No 135
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=29.75 E-value=1.3e+02 Score=34.00 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=75.7
Q ss_pred ChHHHHHHHHhhcccCccc------------CCcchhHHHhhHHHHhhhhh----cCCc-------cchHHHHHHHHHHH
Q 007146 14 KSEFTANLVRSRVLPLYSV------------SVCLPYLVASANWILGELAS----CLPE-------DISADVYSSLLKAL 70 (616)
Q Consensus 14 ~~~~~~~l~~~~V~P~~~~------------~~~sp~LrA~A~w~~gela~----~~~e-------~~~~~~~~sll~~l 70 (616)
-+.++.++....++|--.+ ..+.+|=...|.=+.|+..+ -++. +...+..+.++.++
T Consensus 199 c~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~~~k~~a~~~Le~~r~~l~~ai 278 (441)
T PF12054_consen 199 CQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSPSQKLSALQALEDRRQRLQAAI 278 (441)
T ss_pred HHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence 3667777777666441111 12334667777777777643 2222 23333334443332
Q ss_pred hccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhcccccchhhHH----HHHHHHHHHhhhhcccc-chH
Q 007146 71 QMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYEDEENSIL----FELLSSVVGAANENVAD-HIP 145 (616)
Q Consensus 71 ~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed~e~~~L----~~lL~tive~~~e~iap-~~~ 145 (616)
..=. ..-+-+=+||.|+.| +.+|.-+.-|+..-|++.-+|..|..|+++ .| ...|...|+-+. .=-| =.+
T Consensus 279 ~~~~-~~~~~~~~~V~Aa~A-~A~v~l~~lP~KLnPiIrpLMdSIK~Een~--~LQ~rsA~slA~Li~~~~-~rkp~Pnd 353 (441)
T PF12054_consen 279 EEAK-EVQTSRDVRVLAAAA-SALVALGGLPKKLNPIIRPLMDSIKREENE--LLQQRSAESLARLIQLCV-DRKPCPND 353 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHH-HHHHHhccCCCCccHHHHHHHHHhhccccH--HHHHHHHHHHHHHHHHHh-CCCCCCcH
Confidence 2111 000124455555433 233344788999999999999999999976 33 344555555555 2222 336
Q ss_pred HHHHHHHHHH
Q 007146 146 YIVSSLVAAI 155 (616)
Q Consensus 146 ~l~~~la~~~ 155 (616)
-|+.||..-.
T Consensus 354 KIvkNLc~fl 363 (441)
T PF12054_consen 354 KIVKNLCTFL 363 (441)
T ss_pred HHHHHHhhhh
Confidence 6777777655
No 136
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=29.47 E-value=2.7e+02 Score=33.88 Aligned_cols=119 Identities=18% Similarity=0.077 Sum_probs=79.0
Q ss_pred HHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHH
Q 007146 17 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 95 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll 95 (616)
....|..+-+.=.+. .+.|++|..|-=.+ +++ ..+..-.++..|.+++.||. -=||=.||.||+.+-
T Consensus 88 ~~~lLavNti~kDl~--d~N~~iR~~AlR~l----s~l~~~el~~~~~~~ik~~l~d~~------ayVRk~Aalav~kly 155 (757)
T COG5096 88 ELALLAVNTIQKDLQ--DPNEEIRGFALRTL----SLLRVKELLGNIIDPIKKLLTDPH------AYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHHHHHHHhhcc--CCCHHHHHHHHHHH----HhcChHHHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHHH
Confidence 334444455555555 78889999987555 344 56677889999999999997 569999999999998
Q ss_pred hcCC--CCCC-hhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 007146 96 ENDY--MPPE-WYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLV 152 (616)
Q Consensus 96 ~~~~--~p~~-~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la 152 (616)
+-+. -+.. .--++..++. |+++-.....+-+..+--+|..-+|.-.++..+-
T Consensus 156 ~ld~~l~~~~g~~~~l~~l~~-----D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~ 210 (757)
T COG5096 156 RLDKDLYHELGLIDILKELVA-----DSDPIVIANALASLAEIDPELAHGYSLEVILRIP 210 (757)
T ss_pred hcCHhhhhcccHHHHHHHHhh-----CCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhh
Confidence 6665 3322 2223333332 3334467777777777777766666665555543
No 137
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=29.06 E-value=70 Score=35.80 Aligned_cols=62 Identities=27% Similarity=0.104 Sum_probs=44.2
Q ss_pred hhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCC
Q 007146 24 SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP 101 (616)
Q Consensus 24 ~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p 101 (616)
..+.+.+. ...|++|+.+-=.+|.. ..+.+..++.+|.|++ +.||..|+.+|+.+=..+..|
T Consensus 120 ~~L~~~L~--~~~p~vR~aal~al~~r--------~~~~~~~L~~~L~d~d------~~Vra~A~raLG~l~~~~a~~ 181 (410)
T TIGR02270 120 PWLEPLLA--ASEPPGRAIGLAALGAH--------RHDPGPALEAALTHED------ALVRAAALRALGELPRRLSES 181 (410)
T ss_pred HHHHHHhc--CCChHHHHHHHHHHHhh--------ccChHHHHHHHhcCCC------HHHHHHHHHHHHhhccccchH
Confidence 44566665 77888887776555541 1225778889999996 999999999999876554444
No 138
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.47 E-value=3e+02 Score=33.37 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=78.9
Q ss_pred CcchhHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
.+.|-+|+-|-=..| |+ -..-...+..-+++++.|-+ -+||..||...+.|-+-+-.--.=..++..+-
T Consensus 97 d~np~iR~lAlrtm~----~l~v~~i~ey~~~Pl~~~l~d~~------~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~ 166 (734)
T KOG1061|consen 97 DPNPLIRALALRTMG----CLRVDKITEYLCDPLLKCLKDDD------PYVRKTAAVCVAKLFDIDPDLVEDSGLVDALK 166 (734)
T ss_pred CCCHHHHHHHhhcee----eEeehHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHhhcCChhhccccchhHHHH
Confidence 667788877753332 33 55666778999999999996 99999999999998776664444455666555
Q ss_pred hhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHH
Q 007146 113 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVER 172 (616)
Q Consensus 113 ~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~ 172 (616)
..+. |+++-..++.+.+.-|--..+--...+.|...+.+..+..++.-- -|.|+-..
T Consensus 167 ~ll~--D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~-EW~qi~IL 223 (734)
T KOG1061|consen 167 DLLS--DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT-EWGQIFIL 223 (734)
T ss_pred HHhc--CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh-hhhHHHHH
Confidence 5555 333335544444443333333323445555666666665554433 48887644
No 139
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=28.10 E-value=30 Score=41.97 Aligned_cols=19 Identities=0% Similarity=0.041 Sum_probs=9.1
Q ss_pred ccCcHHHHHH-HHHhchhhh
Q 007146 592 QTLSSQLISK-FLKAYPQLT 610 (616)
Q Consensus 592 q~lp~~l~~~-f~~~~p~~~ 610 (616)
.+.++..+++ .+....+.-
T Consensus 128 ~~r~~~~l~~~l~~ll~eAN 147 (895)
T KOG2076|consen 128 RSRGKSKLAPELRQLLGEAN 147 (895)
T ss_pred CCCcccccCHHHHHHHHHHH
Confidence 3445555544 555444433
No 140
>PF12060 DUF3541: Domain of unknown function (DUF3541); InterPro: IPR021928 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 230 amino acids in length.
Probab=27.83 E-value=73 Score=32.95 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhhc-------cc-----------Cc
Q 007146 240 DSSMLLRSIILSVSERNVIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIVN-------LH-----------SK 301 (616)
Q Consensus 240 D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~-------~~-----------~~ 301 (616)
.+-.-|.+|++..++-.....+. |..+||-=+++--=|. --+++-|+.++.+. -+ |+
T Consensus 127 ~~d~klr~~lr~~Df~~~~TD~~---MI~aWAAQLaNqVYWl--rQLGe~D~v~~f~~AFr~~YPd~~D~~Ls~qQy~NK 201 (227)
T PF12060_consen 127 KCDDKLREVLRRYDFKKYLTDPA---MIEAWAAQLANQVYWL--RQLGEQDVVEEFIQAFRATYPDSKDAKLSKQQYGNK 201 (227)
T ss_pred cchHHHHHHHHHhhhhhhcCCHH---HHHHHHHHHHHHHHHH--HHhCchhHHHHHHHHHHHhCCChhhhhccHHHhcch
Confidence 34677889999999888887787 9999999999999998 12333444444421 11 11
Q ss_pred -ccccchhhccCCCCCCCCCCchhH
Q 007146 302 -YELKNFIVRQMPPPPAPPVPPQSI 325 (616)
Q Consensus 302 -~g~~~F~~~~~~~~~a~p~~~~s~ 325 (616)
||+-|||+. ++.=||+.|
T Consensus 202 lYGMTH~IfA------aS~YYQ~~V 220 (227)
T PF12060_consen 202 LYGMTHIIFA------ASEYYQHPV 220 (227)
T ss_pred hhcchhheec------ccHHHhCCC
Confidence 999999996 555455443
No 141
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.23 E-value=1.1e+03 Score=27.89 Aligned_cols=277 Identities=16% Similarity=0.130 Sum_probs=122.3
Q ss_pred hHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCC-hhhHHHHHHhhccccc-c
Q 007146 43 ANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-WYPLLQVIVGRIGYED-E 120 (616)
Q Consensus 43 A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~-~~plLq~i~~~i~~ed-~ 120 (616)
|+=.+.+|.... ++....++++++...-|.| ..||+.| |+.|-.-|..-++ ...+-.+++.....|| .
T Consensus 42 aaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed------~~iR~~a---ik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~ 111 (556)
T PF05918_consen 42 AAQFIPKFFKHF-PDLQEEAINAQLDLCEDED------VQIRKQA---IKGLPQLCKDNPEHVSKVADVLVQLLQTDDPV 111 (556)
T ss_dssp HHHHHHHHHCC--GGGHHHHHHHHHHHHT-SS------HHHHHHH---HHHGGGG--T--T-HHHHHHHHHHHTT---HH
T ss_pred HHHHHHHHHhhC-hhhHHHHHHHHHHHHhccc------HHHHHHH---HHhHHHHHHhHHHHHhHHHHHHHHHHhcccHH
Confidence 444444554433 3567789999999999996 9999976 5666666665334 4556668888888888 5
Q ss_pred hhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhh--hhhc----
Q 007146 121 ENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLRE--EVEL---- 194 (616)
Q Consensus 121 e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d--~~~~---- 194 (616)
| +-.+=.+.+.-+.-+-..-+-+|..+|..+ + ..=.++=|+.+.-|..=........-. ++-+
T Consensus 112 E---~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~------~--~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 112 E---LDAVKNSLMSLLKQDPKGTLTGLFSQIESS------K--SGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp H---HHHHHHHHHHHHHH-HHHHHHHHHHHHH-----------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred H---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------c--cCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 5 444444444444444444555666665420 0 111334444443332211111000000 0000
Q ss_pred cc----cchhhhhhhhHHHHHHHHHHHHhhc-----ccC--C--------CCc-cccCCCCcccccHH-HHHHHHHHHcc
Q 007146 195 DQ----SSGKWESGQAAIAKAFSALLQQAWL-----THI--Q--------PLE-CEVSAPPSCIDDSS-MLLRSIILSVS 253 (616)
Q Consensus 195 ~~----~~~~~a~G~~~~~~~~stlLq~a~~-----~p~--~--------~~e-~~~~P~~~~~~D~s-~ll~~il~~~t 253 (616)
++ ..++.+.. ...|-.+|.+... ++. + |.+ ...++ .-..+.. .++.++-..+.
T Consensus 181 ~~ikkvL~DVTaeE----F~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~--~sD~e~Idrli~C~~~Alp 254 (556)
T PF05918_consen 181 DEIKKVLQDVTAEE----FELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFD--PSDPESIDRLISCLRQALP 254 (556)
T ss_dssp HHHHHHCTT--HHH----HHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS-----SSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHhccHHH----HHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCC--CcCHHHHHHHHHHHHHhhH
Confidence 00 00011111 1233344444444 110 1 111 11122 1122333 35556666677
Q ss_pred ccchhhhhhHHHHHH-HHHHHHhhhhhhhhhccchhhHHHHhhhcccCccc-------ccchhhccCCCCCCCCCCchhH
Q 007146 254 ERNVIEELKLSELLL-VWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYE-------LKNFIVRQMPPPPAPPVPPQSI 325 (616)
Q Consensus 254 ~~~~~~~~kis~l~~-~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~~~g-------~~~F~~~~~~~~~a~p~~~~s~ 325 (616)
+++..++- +.++. ++-.+++.|+.-.+......+-.+.|+.+.-+.-. +-+.+..-||.+...|.-+-++
T Consensus 255 ~fs~~v~S--skfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~~~~~~l~fs~ 332 (556)
T PF05918_consen 255 FFSRGVSS--SKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSKKTEPKLQFSY 332 (556)
T ss_dssp G-BTTB----HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS----------HHH
T ss_pred HhcCCCCh--HHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCCCCCCcccchH
Confidence 76655433 23443 35567777887777777777777778766654200 1123455688888888888899
Q ss_pred HhhHHHHHHHHHHhCchhhhhhh
Q 007146 326 IEGIGAFLSEAILQYPSATWRAC 348 (616)
Q Consensus 326 ~~~i~~fvs~ai~~~p~a~~rAc 348 (616)
+||+--...+.-.+.|+++-.-|
T Consensus 333 vEcLL~afh~La~k~p~~~~~lC 355 (556)
T PF05918_consen 333 VECLLYAFHQLARKSPNSLNFLC 355 (556)
T ss_dssp HHHHHHHHHHHHTT-THHHH---
T ss_pred hhHHHHHHHHHhhhCcchhhhHh
Confidence 99887777777778888754443
No 142
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.18 E-value=1.1e+02 Score=30.78 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhccccc--chhhHH------HHHHHHHHHhh
Q 007146 65 SLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED--EENSIL------FELLSSVVGAA 136 (616)
Q Consensus 65 sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed--~e~~~L------~~lL~tive~~ 136 (616)
-+..+|+.-+ -|-|.-|.-++..||++ -.+..+.|+|++++.-+...= .+.++. +|.|-+.-+..
T Consensus 42 if~dGL~Et~------~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 42 IFFDGLRETE------HPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHhhhhccC------ccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3455666664 89999999999999999 445579999998776644332 122233 33333336677
Q ss_pred hhccccchHHHHHHHH
Q 007146 137 NENVADHIPYIVSSLV 152 (616)
Q Consensus 137 ~e~iap~~~~l~~~la 152 (616)
++.+.||..+|...+.
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8999999888887776
No 143
>PLN02751 glutamyl-tRNA(Gln) amidotransferase
Probab=26.11 E-value=1.8e+02 Score=34.03 Aligned_cols=117 Identities=14% Similarity=0.240 Sum_probs=64.6
Q ss_pred HHhhHHHHhhhhhcCCcc--------chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHH
Q 007146 40 VASANWILGELASCLPED--------ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVI 111 (616)
Q Consensus 40 rA~A~w~~gela~~~~e~--------~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i 111 (616)
+..|||+++++...+.+. ....-+..|++.+.+-. +| .-.|=-.|..+++.+..| ..+
T Consensus 407 k~~anwi~~el~~~l~~~~~~i~~~~l~p~~laeLi~li~~g~---Is----~~~AK~vl~~~~~~~~~p-------~~i 472 (544)
T PLN02751 407 KLAANWIMGDIAAYLKNEKVSISEIKLTPKELAELIASIKDGT---IS----GKIGKEILPELLAKGGTV-------KGL 472 (544)
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCHHHHHHHHHHHHcCC---cc----HHHHHHHHHHHHhCCCCH-------HHH
Confidence 566999999996644322 12233344444444331 10 111222244444333322 245
Q ss_pred Hhhccccc-chhhHHHHHHHHHHHhhhhccccch---HHHHHHHHHHHHhccCCCCCCchHHHHH
Q 007146 112 VGRIGYED-EENSILFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVER 172 (616)
Q Consensus 112 ~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~---~~l~~~la~~~~~~~~~~~~~~pq~ve~ 172 (616)
+++-+..- +|.+.|-.+...|++.-.+.|.-|- ..+..-|.++++|.+.--- .|+.|..
T Consensus 473 iee~gL~qisD~~~l~~iv~evi~~np~~V~~~k~Gk~k~~g~lvGqVMK~tkGkA--np~~v~~ 535 (544)
T PLN02751 473 VEEKGLVQISDPAEIEAMVDKVLEENPKQLEQYRGGKTKLQGFFAGQVMKASKGKA--NPGLLNK 535 (544)
T ss_pred HHhcCCcccCCHHHHHHHHHHHHHHCHHHHHHHHcccHHHHHHHHHHHHHHhCCCC--CHHHHHH
Confidence 55544333 3444588888999988888888877 6777778888888764333 2455433
No 144
>KOG3118 consensus Disrupter of silencing SAS10 [Chromatin structure and dynamics]
Probab=25.26 E-value=47 Score=37.93 Aligned_cols=19 Identities=5% Similarity=-0.020 Sum_probs=11.5
Q ss_pred HHHHhhhhhhh-hccccccC
Q 007146 576 VVASSIERYHN-VIMQGQTL 594 (616)
Q Consensus 576 ~Vls~~~k~h~-~l~r~q~l 594 (616)
......+.+|+ +|.|...+
T Consensus 140 e~~~~~ee~~~~~l~rq~~i 159 (517)
T KOG3118|consen 140 EEKAREEEVERLRLERQGQI 159 (517)
T ss_pred HHHHHHHHHHHHHHhhhccc
Confidence 45666777777 55554444
No 145
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=25.12 E-value=4.3e+02 Score=35.93 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=61.0
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhH--
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPL-- 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~pl-- 107 (616)
..++-.+..|+|+++.|.+.-++. -...+.--++..|..-+ -.||..||.||.++.+..+ ..+...+
T Consensus 620 sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~------~~v~keAA~AL~nL~~~~~-~~q~~~~v~ 692 (2102)
T PLN03200 620 SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT------EAVATQSARALAALSRSIK-ENRKVSYAA 692 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC------hHHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 456688999999999998755432 23345677888888764 7899999999999997544 3232222
Q ss_pred ---HHHHHhhcccccch-hhHHHHHHHHHHHhh
Q 007146 108 ---LQVIVGRIGYEDEE-NSILFELLSSVVGAA 136 (616)
Q Consensus 108 ---Lq~i~~~i~~ed~e-~~~L~~lL~tive~~ 136 (616)
++.+++.....+.+ ....+..|+.++..+
T Consensus 693 ~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~ 725 (2102)
T PLN03200 693 EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725 (2102)
T ss_pred cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence 22445555444422 112355566665554
No 146
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=24.88 E-value=58 Score=34.09 Aligned_cols=113 Identities=22% Similarity=0.160 Sum_probs=73.7
Q ss_pred CcchhHHHhhHHHHhhhhhcC-CccchH--HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHH
Q 007146 34 VCLPYLVASANWILGELASCL-PEDISA--DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQV 110 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~-~e~~~~--~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~ 110 (616)
..-||++-+|.+++|..+.|. .++... ....-+.+.|.+|+ .-||..|..||.+|=-+..-...+..-+..
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~------~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~ 97 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPN------PSVREKALNALNNLSVNDENQEQIKMYIPQ 97 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCC------hHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 346899999999999988865 333222 24566788888886 789999999999886665544466666777
Q ss_pred HHhhccccc--chhh-HHHHHHH--HHHHhhhhccccchHHHHHHHH
Q 007146 111 IVGRIGYED--EENS-ILFELLS--SVVGAANENVADHIPYIVSSLV 152 (616)
Q Consensus 111 i~~~i~~ed--~e~~-~L~~lL~--tive~~~e~iap~~~~l~~~la 152 (616)
+..++.... ++-. .-+++|. |+...+.+-++.++|.+.+-|.
T Consensus 98 Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~ 144 (254)
T PF04826_consen 98 VCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLS 144 (254)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHH
Confidence 777655443 2211 0123333 3445556667777777765554
No 147
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=24.78 E-value=69 Score=37.52 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=15.2
Q ss_pred ccchhhHHHHhhhcccCc---ccccchhh
Q 007146 284 EDLSVFDCIKEIVNLHSK---YELKNFIV 309 (616)
Q Consensus 284 ed~~~~d~i~e~v~~~~~---~g~~~F~~ 309 (616)
.+-..+-+|+.-+.+++. +|+--|++
T Consensus 302 ~~Gk~~asiEpt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 302 CTGKPMASIEPTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred ccCCceeeccccCCcCceeeecCCceEEE
Confidence 344567778777777663 34444444
No 148
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=24.61 E-value=2.1e+02 Score=27.20 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhhccccchHH---HHHHHHHHHHhcc
Q 007146 124 ILFELLSSVVGAANENVADHIPY---IVSSLVAAISKHM 159 (616)
Q Consensus 124 ~L~~lL~tive~~~e~iap~~~~---l~~~la~~~~~~~ 159 (616)
.|-.++..+++.-++.|.-|-.+ ...-|.++++|.+
T Consensus 92 el~~~v~~vi~~~~~~v~~~~~g~~k~~~~l~G~vMk~~ 130 (147)
T smart00845 92 ELEAIVDEVIAENPKAVEDYRAGKKKALGFLVGQVMKAT 130 (147)
T ss_pred HHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 36777777777776666665544 4444555555544
No 149
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.24 E-value=68 Score=23.48 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHH
Q 007146 62 VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 95 (616)
Q Consensus 62 ~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll 95 (616)
+...|++.|..++ .-||-.|+.||++|-
T Consensus 13 ~i~~Lv~ll~~~~------~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPD------PEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSS------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCC------HHHHHHHHHHHHHHh
Confidence 5677889999886 889999999999874
No 150
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=44 Score=37.44 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhccc
Q 007146 210 KAFSALLQQAWLTH 223 (616)
Q Consensus 210 ~~~stlLq~a~~~p 223 (616)
+-+-.+++++.-.|
T Consensus 27 ~dye~~~erl~~~~ 40 (514)
T KOG3130|consen 27 NDYEALRERLSTLP 40 (514)
T ss_pred hhHHHHHHHHHHhh
Confidence 44445555555544
No 151
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=23.41 E-value=25 Score=41.52 Aligned_cols=17 Identities=12% Similarity=0.122 Sum_probs=10.2
Q ss_pred HHHHHHHHHHccccchh
Q 007146 242 SMLLRSIILSVSERNVI 258 (616)
Q Consensus 242 s~ll~~il~~~t~~~~~ 258 (616)
+.+.++|+--++++...
T Consensus 674 s~vseeivhnlD~Cei~ 690 (952)
T KOG1834|consen 674 SRVSEEIVHNLDYCEIH 690 (952)
T ss_pred chhhhhhhcccCceEEE
Confidence 45666666666666544
No 152
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=23.21 E-value=6.7e+02 Score=24.21 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=79.4
Q ss_pred HHHHhhcccCcccCCcchhHHHhhHHHHhhhhh-cCCc---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHH
Q 007146 20 NLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLPE---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 95 (616)
Q Consensus 20 ~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~-~~~e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll 95 (616)
.-.++|+.=+.. +++++=|-.++=+++-.-. |-.+ +....-++.+++-|..|+ -.+++..|..+|..+.
T Consensus 24 ~~l~~ri~~LL~--s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~-----~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 24 HKLVTRINSLLQ--SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPD-----PPSVLEAAIITLTRLF 96 (165)
T ss_pred HHHHHHHHHHhC--CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHH
Confidence 334466665555 6666666555545544333 2222 123445667777777765 5788899999999988
Q ss_pred hcCC-C--------CCChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 007146 96 ENDY-M--------PPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVA 153 (616)
Q Consensus 96 ~~~~-~--------p~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~ 153 (616)
+.-. + =|.+..++|.+++.++... .....+.+|.+.+..+.--+-||...|-+-+..
T Consensus 97 ~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 97 DLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLS 162 (165)
T ss_pred HHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHH
Confidence 7665 1 2246666667777666322 222367888888888888888888777665543
No 153
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=23.21 E-value=40 Score=35.23 Aligned_cols=11 Identities=45% Similarity=0.770 Sum_probs=6.9
Q ss_pred HHHHHHHHHhc
Q 007146 596 SQLISKFLKAY 606 (616)
Q Consensus 596 ~~l~~~f~~~~ 606 (616)
++-=++|+++|
T Consensus 232 SdfH~kFl~Ky 242 (244)
T PF04889_consen 232 SDFHKKFLNKY 242 (244)
T ss_pred cHHHHHHHHHh
Confidence 55555777766
No 154
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=22.82 E-value=2.3e+03 Score=30.13 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=33.3
Q ss_pred chhHHhhHHHHHHHHHHhCchh--hhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhh
Q 007146 322 PQSIIEGIGAFLSEAILQYPSA--TWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRA 385 (616)
Q Consensus 322 ~~s~~~~i~~fvs~ai~~~p~a--~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~ 385 (616)
.+.+++.+-+++.++=++.... +..-.+.++ +.+|- .+.+.+.-.|..++++-|+.
T Consensus 3678 ~~~~~~~lls~~~~~~~~m~t~~e~~etssf~~--~~~~~------kvlra~~~k~~~~~ls~lke 3735 (4600)
T COG5271 3678 VLNLFDSLLSSIETATKNMRTFKELAETSSFIE--MSSCF------KVLRAFNLKFQSMKLSSLKE 3735 (4600)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHhhhcchhHHH--HHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665544444 222223333 23333 47788899999999999876
No 155
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=3.9e+02 Score=34.02 Aligned_cols=217 Identities=17% Similarity=0.169 Sum_probs=131.0
Q ss_pred HHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhc-----CCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHH
Q 007146 17 FTANLVRSRVLPLYSVSVCLPYLVASANWILGELASC-----LPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAI 91 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~-----~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai 91 (616)
++..+. -|.|.+- ...++-++.||--+++++... +.++...++|+++++.+..- +=|+|.++--.|
T Consensus 651 ~vs~l~--~v~~~~e-~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~------~~~~~~~rl~~L 721 (1176)
T KOG1248|consen 651 QVSKLF--TVDPEFE-NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSS------SSPAQASRLKCL 721 (1176)
T ss_pred hHHHHH--HhhHHhh-ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHH
Confidence 344444 6788776 444889999999999999987 57788899999999999988 589999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHhh----cccccchh-----hHHHHHH--HHHHHhhhhc----cccchHHHHHHHHHHHH
Q 007146 92 VGLLENDYMPPEWYPLLQVIVGR----IGYEDEEN-----SILFELL--SSVVGAANEN----VADHIPYIVSSLVAAIS 156 (616)
Q Consensus 92 ~sll~~~~~p~~~~plLq~i~~~----i~~ed~e~-----~~L~~lL--~tive~~~e~----iap~~~~l~~~la~~~~ 156 (616)
-.+++-.- .+...++++++.+ ..+.+..+ ..|+++. ..+.+-|+|. |-+|++-|...+++...
T Consensus 722 ~~L~~~~~--~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~ 799 (1176)
T KOG1248|consen 722 KRLLKLLS--AEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDST 799 (1176)
T ss_pred HHHHHhcc--HHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHH
Confidence 99998664 3444555544433 11111111 1223333 4455666444 55577777777666444
Q ss_pred hccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcc------cCCCCccc
Q 007146 157 KHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLT------HIQPLECE 230 (616)
Q Consensus 157 ~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~------p~~~~e~~ 230 (616)
++. - ..|+|+.....++..--++ ..-.+ +...++-.|.+-.-- -+-.+-.+
T Consensus 800 ~~~-----------a---s~Ivai~~il~e~~~~ld~------~~l~~---li~~V~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 800 RVV-----------A---SDIVAITHILQEFKNILDD------ETLEK---LISMVCLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHH-----------H---HHHHHHHHHHHHHhccccH------HHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 433 1 1155666665555441110 01111 122222222211000 00111145
Q ss_pred cCCCCcccccHHHHHHHHHHHccccchhhhhhHHHHH
Q 007146 231 VSAPPSCIDDSSMLLRSIILSVSERNVIEELKLSELL 267 (616)
Q Consensus 231 ~~P~~~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~ 267 (616)
.+|..+.......|+..+++++...+-.+.+|+--|+
T Consensus 857 ~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 857 KFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL 893 (1176)
T ss_pred cCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6787788888888888999988888888888854444
No 156
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=22.13 E-value=1.1e+02 Score=29.05 Aligned_cols=6 Identities=33% Similarity=0.335 Sum_probs=2.3
Q ss_pred HHhhhh
Q 007146 485 AVQLKE 490 (616)
Q Consensus 485 ~~~lke 490 (616)
+-+|+.
T Consensus 100 ~~kyk~ 105 (136)
T PF04871_consen 100 RKKYKE 105 (136)
T ss_pred HHHHHH
Confidence 333433
No 157
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=22.10 E-value=84 Score=35.29 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 007146 449 IKLAVLTLAKVVERLLGL 466 (616)
Q Consensus 449 ~Kl~vl~L~svi~~Ll~~ 466 (616)
.|-.+=++..-|-.+++.
T Consensus 130 vk~~~~~~~~~~~~~lg~ 147 (432)
T PF09073_consen 130 VKEVVPGIEEGLRQVLGI 147 (432)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 333344444444444554
No 158
>KOG3241 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.72 E-value=44 Score=33.69 Aligned_cols=14 Identities=29% Similarity=0.209 Sum_probs=6.0
Q ss_pred HHhhHHHHHHHHHH
Q 007146 325 IIEGIGAFLSEAIL 338 (616)
Q Consensus 325 ~~~~i~~fvs~ai~ 338 (616)
.+.+|-.-+...|.
T Consensus 40 ~itgVCqRCkEqie 53 (227)
T KOG3241|consen 40 EITGVCQRCKEQIE 53 (227)
T ss_pred HhhhHHHHHHHHHH
Confidence 34444444444444
No 159
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=21.37 E-value=31 Score=39.74 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=6.7
Q ss_pred hhhhhhHhhccCCC--chhhhHHHHHh
Q 007146 409 PAVVEGILKKDEDG--GFALWGSALAF 433 (616)
Q Consensus 409 P~lveqvLek~~~~--gf~iWfs~La~ 433 (616)
.+.+|...++...+ .|.+|......
T Consensus 159 ~EEAEe~~~~r~k~~~~~~~~~~k~~~ 185 (527)
T PF05793_consen 159 LEEAEEEMERRNKVMNHFSRWMMKRLK 185 (527)
T ss_dssp HHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHhh
Confidence 34456666666666 68888765553
No 160
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=20.97 E-value=49 Score=33.11 Aligned_cols=29 Identities=41% Similarity=0.361 Sum_probs=23.5
Q ss_pred HHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 64 SSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 64 ~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
+-+-..+.||+ .=||+.|+.+|+.|++..
T Consensus 43 sLlt~il~Dp~------~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 43 SLLTCILKDPS------PKVRAAAASALAALLEGS 71 (182)
T ss_pred chhHHHHcCCc------hhHHHHHHHHHHHHHHcc
Confidence 33444567995 889999999999999985
No 161
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=20.71 E-value=87 Score=36.32 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=5.8
Q ss_pred HHHHHhhhhhccccc
Q 007146 482 MEAAVQLKEVQEDEE 496 (616)
Q Consensus 482 Le~~~~lke~~dede 496 (616)
++....+..+.|++|
T Consensus 62 vesa~~~e~~Ed~de 76 (694)
T KOG4264|consen 62 VESAKPAESVEDDDE 76 (694)
T ss_pred ccccCcccccccccc
Confidence 344443433333333
No 162
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=20.42 E-value=5.8e+02 Score=24.00 Aligned_cols=118 Identities=26% Similarity=0.333 Sum_probs=64.6
Q ss_pred HHHhhHHHHhhhhhcC--------CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHH
Q 007146 39 LVASANWILGELASCL--------PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQV 110 (616)
Q Consensus 39 LrA~A~w~~gela~~~--------~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~ 110 (616)
-+.-|||+++++...+ +-...-+-+..++..+.+-. -=+-+|=--|..++.++..| ..
T Consensus 13 ~k~~anwi~~el~~~l~~~~~~~~~~~i~~~~l~~li~l~~~~~-------Is~~~ak~ll~~~~~~~~~~-------~~ 78 (148)
T PF02637_consen 13 PKLAANWILNELLGLLNKKGLDIEDSPISPEHLAELINLLEDGK-------ISKKSAKELLRELLENGKSP-------EE 78 (148)
T ss_dssp HHHHHHHHHTHHHHHHHHHT--TTTSSSTHHHHHHHHHHHHTTS-------SGHHHHHHHHHHHHHHTS-H-------HH
T ss_pred HHHHHHHHHHHHHHHHHHCCCChhhcCCCHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHcCCCH-------HH
Confidence 4677999999987632 22244566677776666652 22333444566677664333 33
Q ss_pred HHhhccccc-chhhHHHHHHHHHHHhhhhccccch---HHHHHHHHHHHHhccCCCCCCchHHHHH
Q 007146 111 IVGRIGYED-EENSILFELLSSVVGAANENVADHI---PYIVSSLVAAISKHMHPSSEPWPQVVER 172 (616)
Q Consensus 111 i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~---~~l~~~la~~~~~~~~~~~~~~pq~ve~ 172 (616)
++.+-+-.- +|...|-.+.+.|++.-++.+.-|- -.+..-|.++++|.+.-.-+ |+.|..
T Consensus 79 ii~~~~l~~i~d~~el~~~v~~vi~~n~~~v~~~~~Gk~k~~~~LvGqvMk~t~G~ad--p~~v~~ 142 (148)
T PF02637_consen 79 IIEENGLWQISDEEELEALVEEVIAENPKEVEDYRNGKKKAIGFLVGQVMKETKGRAD--PKEVKE 142 (148)
T ss_dssp HHHHTT---B--CCHHHHHHHHHHHC-HHHHHHHCTT-TTCCHHHHHHHHHCTTS-C---HHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHHCHHHHHHHHcChHHHHHHHHHHHHHHcCCCCC--HHHHHH
Confidence 343321111 1112488889999988877776554 24556677777777643332 444433
No 163
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=20.31 E-value=5e+02 Score=26.25 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHH
Q 007146 124 ILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVER 172 (616)
Q Consensus 124 ~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~ 172 (616)
..++++++..++.++.-.|+...+.++|+. +|-.+. -++.+-+|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~--lr~~~~--f~~~~~~e~ 63 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGD--LRESED--FSFRKELEQ 63 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHH--HHcCCC--cchHHHHHH
Confidence 378899999999999988888888888886 222222 355555555
No 164
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=20.11 E-value=50 Score=36.22 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=13.6
Q ss_pred hhhHHHHhhhhhhhhccc
Q 007146 573 QLKVVASSIERYHNVIMQ 590 (616)
Q Consensus 573 ~~~~Vls~~~k~h~~l~r 590 (616)
.+.+|+-..||-||.-+|
T Consensus 303 t~nvVvCqyDKV~RsKnK 320 (348)
T KOG2652|consen 303 TQNVVVCQYDKVNRSKNK 320 (348)
T ss_pred cceeEEEeeeeeccccce
Confidence 677888888888886544
Done!