Query 007146
Match_columns 616
No_of_seqs 102 out of 114
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:20:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 99.9 1.5E-23 5E-28 242.7 26.6 384 17-491 451-869 (960)
2 2x1g_F Cadmus; transport prote 98.9 7.1E-09 2.4E-13 119.6 13.1 140 3-153 488-635 (971)
3 4fdd_A Transportin-1; heat rep 98.7 1.4E-06 4.9E-11 99.0 23.8 370 24-465 403-788 (852)
4 2x19_B Importin-13; nuclear tr 98.5 9.4E-07 3.2E-11 101.4 16.0 173 3-189 473-656 (963)
5 3m1i_C Exportin-1; heat repeat 98.4 9.1E-06 3.1E-10 95.3 19.3 112 35-152 512-638 (1049)
6 2bpt_A Importin beta-1 subunit 98.0 0.00052 1.8E-08 76.6 22.6 126 24-158 414-553 (861)
7 1qgr_A Protein (importin beta 97.8 0.0084 2.9E-07 67.1 27.9 141 34-184 377-539 (876)
8 4fdd_A Transportin-1; heat rep 97.7 0.0064 2.2E-07 69.1 25.0 139 34-185 370-515 (852)
9 2bpt_A Importin beta-1 subunit 97.6 0.014 4.8E-07 65.1 26.4 140 34-184 380-531 (861)
10 1qgr_A Protein (importin beta 97.6 7E-05 2.4E-09 83.8 7.8 122 25-155 412-558 (876)
11 3ibv_A Exportin-T; karyopherin 97.4 0.0065 2.2E-07 71.7 20.5 146 34-185 506-684 (980)
12 4hat_C Exportin-1; heat repeat 97.3 0.01 3.5E-07 70.4 20.4 107 35-184 512-620 (1023)
13 2qk2_A LP04448P; mini spindles 97.2 0.0021 7.2E-08 62.1 11.5 136 34-186 68-209 (242)
14 2qk1_A Protein STU2; STU2P, XM 96.6 0.014 4.7E-07 57.9 11.7 140 34-186 72-224 (249)
15 1u6g_C TIP120 protein, CAND1; 96.5 0.0059 2E-07 72.3 9.8 138 34-184 59-206 (1230)
16 2vgl_B AP-2 complex subunit be 96.1 0.99 3.4E-05 49.5 24.3 78 33-116 131-212 (591)
17 1b3u_A Protein (protein phosph 96.1 0.015 5.1E-07 61.7 9.3 135 34-184 137-273 (588)
18 2x19_B Importin-13; nuclear tr 96.0 0.32 1.1E-05 55.8 20.3 138 34-184 460-601 (963)
19 1w63_A Adapter-related protein 96.0 0.005 1.7E-07 68.5 5.1 124 34-170 118-253 (618)
20 2qk2_A LP04448P; mini spindles 96.0 0.019 6.6E-07 55.3 8.6 116 24-150 101-222 (242)
21 1u6g_C TIP120 protein, CAND1; 95.9 0.015 5.1E-07 68.8 8.7 123 23-152 177-302 (1230)
22 3gjx_A Exportin-1; transport, 95.8 0.17 5.7E-06 60.6 17.2 57 37-99 540-598 (1073)
23 1b3u_A Protein (protein phosph 95.7 0.024 8.2E-07 60.1 8.7 135 34-183 413-549 (588)
24 2vgl_B AP-2 complex subunit be 95.7 0.052 1.8E-06 59.8 11.5 100 20-134 85-186 (591)
25 2qk1_A Protein STU2; STU2P, XM 95.6 0.023 7.7E-07 56.4 7.6 139 2-149 84-236 (249)
26 2jdq_A Importin alpha-1 subuni 95.6 0.012 4.1E-07 60.4 5.7 138 34-181 287-442 (450)
27 1ibr_B P95, importin beta-1 su 95.4 0.22 7.7E-06 50.8 14.3 133 35-179 49-200 (462)
28 1wa5_B Importin alpha subunit; 95.2 0.033 1.1E-06 59.6 7.9 139 34-181 352-509 (530)
29 3tj1_A RNA polymerase I-specif 95.2 0.23 8E-06 56.4 14.7 136 339-490 125-264 (649)
30 1xqr_A HSPBP1 protein; armadil 95.1 0.017 5.8E-07 59.1 4.8 137 34-183 93-239 (296)
31 1ibr_B P95, importin beta-1 su 94.7 0.12 4.2E-06 52.8 10.2 111 36-152 341-457 (462)
32 1w63_A Adapter-related protein 94.2 0.32 1.1E-05 54.0 12.6 58 34-98 153-210 (618)
33 3ltj_A Alpharep-4; protein eng 93.7 0.25 8.4E-06 45.5 9.1 48 34-94 56-103 (201)
34 3ltm_A Alpha-REP4; protein eng 93.0 0.27 9.2E-06 45.7 8.2 48 34-94 61-108 (211)
35 2vgl_A Adaptor protein complex 92.8 0.16 5.6E-06 56.7 7.3 123 34-170 122-260 (621)
36 3m1i_C Exportin-1; heat repeat 92.6 6.8 0.00023 45.9 21.0 134 35-183 465-619 (1049)
37 1te4_A Conserved protein MTH18 92.5 0.13 4.5E-06 45.0 5.0 48 34-94 53-100 (131)
38 4db8_A Armadillo-repeat protei 92.3 0.11 3.9E-06 49.1 4.7 161 5-181 35-208 (252)
39 2ca6_A RAN GTPase-activating p 92.2 0.077 2.6E-06 54.4 3.6 11 479-489 323-333 (386)
40 1oyz_A Hypothetical protein YI 91.6 0.57 2E-05 45.4 8.8 64 34-113 34-97 (280)
41 4db6_A Armadillo repeat protei 91.5 0.14 4.7E-06 47.3 4.1 94 34-135 65-168 (210)
42 3ltm_A Alpha-REP4; protein eng 91.3 0.67 2.3E-05 42.9 8.6 49 34-95 30-78 (211)
43 1oyz_A Hypothetical protein YI 90.9 1.7 5.9E-05 42.0 11.5 76 34-119 65-141 (280)
44 4db6_A Armadillo repeat protei 90.9 0.24 8.3E-06 45.6 5.2 137 34-182 23-167 (210)
45 2jdq_A Importin alpha-1 subuni 90.4 0.57 1.9E-05 47.9 7.8 138 34-185 245-393 (450)
46 4b8j_A Importin subunit alpha- 90.3 0.3 1E-05 52.0 5.8 135 36-181 342-495 (528)
47 2ca6_A RAN GTPase-activating p 90.0 0.099 3.4E-06 53.5 1.8 6 404-409 239-244 (386)
48 4hxt_A De novo protein OR329; 89.9 0.52 1.8E-05 44.0 6.5 80 34-119 55-141 (252)
49 3ltj_A Alpharep-4; protein eng 89.6 1.2 4.2E-05 40.8 8.7 48 34-94 25-72 (201)
50 1wa5_C Importin alpha RE-expor 89.1 3.5 0.00012 47.7 14.0 94 37-137 51-155 (960)
51 3ibv_A Exportin-T; karyopherin 88.2 3.5 0.00012 48.7 13.3 237 45-342 674-928 (980)
52 4gmo_A Putative uncharacterize 87.8 0.14 4.8E-06 57.7 1.1 74 17-98 27-107 (684)
53 1wa5_B Importin alpha subunit; 87.1 1 3.4E-05 48.1 7.2 96 34-135 184-287 (530)
54 4b8j_A Importin subunit alpha- 86.6 1.8 6.3E-05 45.9 8.9 140 34-185 297-446 (528)
55 1te4_A Conserved protein MTH18 85.8 0.48 1.6E-05 41.4 3.2 47 34-93 84-130 (131)
56 1xqr_A HSPBP1 protein; armadil 85.3 1.3 4.5E-05 45.1 6.7 58 34-97 178-239 (296)
57 2iw3_A Elongation factor 3A; a 84.7 2.6 9E-05 50.1 9.7 214 41-309 70-293 (986)
58 3ul1_B Importin subunit alpha- 84.0 2 6.7E-05 46.2 7.7 111 17-136 308-432 (510)
59 2x1g_F Cadmus; transport prote 83.7 6.8 0.00023 45.0 12.5 144 34-183 51-219 (971)
60 4db8_A Armadillo-repeat protei 83.7 0.73 2.5E-05 43.5 3.7 78 34-119 107-193 (252)
61 3tpo_A Importin subunit alpha- 81.9 2 7E-05 46.2 6.8 113 17-136 327-451 (529)
62 3tpo_A Importin subunit alpha- 81.7 4.4 0.00015 43.6 9.3 76 17-98 111-193 (529)
63 4hxt_A De novo protein OR329; 80.9 2.4 8.3E-05 39.3 6.1 80 34-119 13-99 (252)
64 3ul1_B Importin subunit alpha- 77.0 9.8 0.00034 40.7 10.2 75 18-98 93-174 (510)
65 2vgl_A Adaptor protein complex 73.6 1.4 4.7E-05 49.2 2.5 58 34-98 159-218 (621)
66 4ady_A RPN2, 26S proteasome re 65.4 14 0.00049 43.8 8.7 107 25-141 615-725 (963)
67 2ayu_A Nucleosome assembly pro 60.8 1.6 5.3E-05 47.3 -0.4 13 283-295 205-217 (417)
68 4fp9_B Mterf domain-containing 60.3 1.8 6.2E-05 45.3 0.0 28 245-273 46-73 (335)
69 1xm9_A Plakophilin 1; armadill 57.6 73 0.0025 33.5 11.8 57 34-97 13-74 (457)
70 4fp9_B Mterf domain-containing 57.1 2.8 9.7E-05 43.8 0.8 8 336-343 133-140 (335)
71 1jdh_A Beta-catenin; beta-cate 56.7 13 0.00043 38.8 5.7 58 34-97 238-296 (529)
72 3tjz_B Coatomer subunit gamma; 55.6 48 0.0017 34.7 9.9 73 33-116 114-186 (355)
73 2ayu_A Nucleosome assembly pro 52.3 2.9 0.0001 45.1 -0.0 10 332-341 188-197 (417)
74 3tj1_A RNA polymerase I-specif 46.6 60 0.002 37.0 9.3 18 324-341 153-170 (649)
75 4hat_C Exportin-1; heat repeat 46.6 26 0.00088 41.7 6.7 87 3-99 524-621 (1023)
76 1xm9_A Plakophilin 1; armadill 45.2 29 0.00099 36.6 6.3 58 34-97 295-361 (457)
77 3now_A UNC-45 protein, SD10334 44.2 38 0.0013 39.5 7.5 142 34-189 634-788 (810)
78 2z6h_A Catenin beta-1, beta-ca 44.1 28 0.00095 38.1 6.1 65 25-97 228-293 (644)
79 3nmw_A APC variant protein; AR 43.3 32 0.0011 35.6 6.2 56 35-97 96-157 (354)
80 2iw3_A Elongation factor 3A; a 42.2 44 0.0015 39.8 7.7 109 38-153 110-224 (986)
81 2z6h_A Catenin beta-1, beta-ca 41.2 46 0.0016 36.4 7.3 81 34-119 25-111 (644)
82 1jdh_A Beta-catenin; beta-cate 39.8 60 0.0021 33.6 7.6 74 38-119 201-279 (529)
83 2z6g_A B-catenin; FULL-length, 39.8 30 0.001 39.4 5.7 59 34-98 371-430 (780)
84 2z6g_A B-catenin; FULL-length, 36.6 59 0.002 37.0 7.4 74 38-119 334-412 (780)
85 3l6x_A Catenin delta-1; cateni 34.3 97 0.0033 34.6 8.5 76 34-118 320-407 (584)
86 3oc3_A Helicase MOT1, MOT1; re 30.7 44 0.0015 38.1 4.9 93 59-162 297-402 (800)
87 3a6p_A Exportin-5; exportin-5, 28.8 79 0.0027 38.0 7.1 100 34-134 58-162 (1204)
88 3fkm_X Signaling protein; brom 27.8 71 0.0024 29.8 5.2 18 393-410 84-101 (166)
89 1w9c_A CRM1 protein, exportin 26.7 2.3E+02 0.008 29.4 9.3 67 104-170 71-139 (321)
90 2zd7_A VPS75, vacuolar protein 25.5 21 0.00071 36.1 1.1 13 283-295 74-86 (264)
91 3l6x_A Catenin delta-1; cateni 23.6 1.5E+02 0.005 33.2 7.6 140 34-182 59-221 (584)
92 1vsy_5 Proteasome activator BL 22.3 66 0.0023 38.3 4.7 114 55-183 837-967 (997)
93 3s51_A Protein FACI, fanconi a 21.5 1.2E+03 0.042 28.7 23.7 165 99-296 168-334 (1308)
94 3b2a_A TON_1937, putative unch 21.4 6.1E+02 0.021 25.7 10.7 158 5-182 11-179 (265)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.92 E-value=1.5e-23 Score=242.74 Aligned_cols=384 Identities=12% Similarity=0.094 Sum_probs=264.2
Q ss_pred HHHHHHHhhcccCcccCCc---chhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHH
Q 007146 17 FTANLVRSRVLPLYSVSVC---LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 93 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~~~~---sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~s 93 (616)
.+..++.++|+|.+. .+ .|+||++|||++|+|+..++++++..++..++++|.|++ +|||+.|+.||..
T Consensus 451 ~l~~~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~------~~V~~~A~~Al~~ 522 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE------YVVYTYAAITIEK 522 (960)
T ss_dssp CHHHHHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC------hhHHHHHHHHHHH
Confidence 567778899999887 34 899999999999999998788899999999999999985 9999999999999
Q ss_pred HHhcCC-------------CCCChhhHHHHHHhhcccc------cchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHH
Q 007146 94 LLENDY-------------MPPEWYPLLQVIVGRIGYE------DEENSILFELLSSVVGAANENVADHIPYIVSSLVAA 154 (616)
Q Consensus 94 ll~~~~-------------~p~~~~plLq~i~~~i~~e------d~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~ 154 (616)
|+++.. -.|-+.+||+.+++.+... ..+...++..|.++++++++++.||++.|++.|...
T Consensus 523 ~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~ 602 (960)
T 1wa5_C 523 ILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEI 602 (960)
T ss_dssp HTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHH
T ss_pred HHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 998532 2346788888777776664 123347999999999999999999999999999987
Q ss_pred HHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCC
Q 007146 155 ISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAP 234 (616)
Q Consensus 155 ~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~ 234 (616)
+.+....+ .-++.....|+++.++.++ ..++ . .... +-.+...|..+|+.- .
T Consensus 603 l~~~~~~~--~~~~~~~~~~e~l~~l~~~---~~~~-------~-~~~~-~~~~~p~~~~iL~~~-----------~--- 654 (960)
T 1wa5_C 603 VTIMAKNP--SNPRFTHYTFESIGAILNY---TQRQ-------N-LPLL-VDSMMPTFLTVFSED-----------I--- 654 (960)
T ss_dssp HHHHTTSC--CCHHHHHHHHHHHHHHHHT---SCGG-------G-HHHH-HHHHHHHHHHHHHTT-----------C---
T ss_pred HHHHHhCC--CCcHHHHHHHHHHHHHHhc---CCcc-------h-HHHH-HHHHHHHHHHHHHhh-----------h---
Confidence 66654322 2355666678888888775 1110 0 1111 112234444444310 0
Q ss_pred CcccccHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHH--hhhhhhhhhccchhhHHHHhhhcccCcc---cccchhh
Q 007146 235 PSCIDDSSMLLRSIILSVSERNVIEELKLSELLLVWADLI--GDWHAWEETEDLSVFDCIKEIVNLHSKY---ELKNFIV 309 (616)
Q Consensus 235 ~~~~~D~s~ll~~il~~~t~~~~~~~~kis~l~~~wa~~~--~~w~~Wee~ed~~~~d~i~e~v~~~~~~---g~~~F~~ 309 (616)
..+..++..++..++.....+.++ ||.+|+.++ ..|.... ++..++++..+| |.++|..
T Consensus 655 ~~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~---------~~~~~~~~L~~~~~~~~~~~~~ 718 (960)
T 1wa5_C 655 QEFIPYVFQIIAFVVEQSATIPES-------IKPLAQPLLAPNVWELKG---------NIPAVTRLLKSFIKTDSSIFPD 718 (960)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCCTT-------TGGGHHHHTSGGGGCCTT---------THHHHHHHHHHHHHHHGGGCSC
T ss_pred HhhHHHHHHHHHHHHHhccCCCHH-------HHHHHHHHcCHHHhcCCC---------CchhHHHHHHHHHHhChHHHHH
Confidence 023334445555555555333332 788888888 7776531 555555444332 3333331
Q ss_pred ccCCCCCCCCCCchhHHhhHHHHHHHHHH-hCchhhhhhhhHHHHHhhCCCccccchhh-HHhHHHHHHHHHHHhhhhhc
Q 007146 310 RQMPPPPAPPVPPQSIIEGIGAFLSEAIL-QYPSATWRACSCVHTLLHVPKYSFETEGV-KQSLTISFSCAAFSRFRAIQ 387 (616)
Q Consensus 310 ~~~~~~~a~p~~~~s~~~~i~~fvs~ai~-~~p~a~~rAck~~h~vLh~~~~s~~~eg~-~~~~~~~f~~~A~~rl~~~~ 387 (616)
.+.++. .+.+.+. +.+ ...||++...+++.++ +. ...+++.+..+++.|+..
T Consensus 719 ------------~~~~l~----~~~~~~~~~~~--~~~a~~ll~~i~~~~~------~~~~~~yl~~i~~~l~~~l~~-- 772 (960)
T 1wa5_C 719 ------------LVPVLG----IFQRLIASKAY--EVHGFDLLEHIMLLID------MNRLRPYIKQIAVLLLQRLQN-- 772 (960)
T ss_dssp ------------SHHHHH----HHHHHHTCTTT--HHHHHHHHHHHHHHSC------HHHHGGGHHHHHHHHHHGGGS--
T ss_pred ------------HHHHHH----HHHHHhCCCcc--cchHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHhh--
Confidence 122333 5666664 333 3779999999999888 66 899999999999999975
Q ss_pred CCCCCchhh-HHHHHhhhhccChhhhhhHhhccCCCc-hh----hhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHH
Q 007146 388 SKPSSLWKP-VVLAISSCYLCYPAVVEGILKKDEDGG-FA----LWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVE 461 (616)
Q Consensus 388 s~~~~l~Kp-LIlvIs~c~~ynP~lveqvLek~~~~g-f~----iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~ 461 (616)
++..++.|- ++.+...|++|+|+.+.++|++.+.+. +. .|...+.. +.+.+|||++++||++++.
T Consensus 773 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~---------~~~~~erk~~~~gl~~ll~ 843 (960)
T 1wa5_C 773 SKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPT---------IGNLLDRKIALIGVLNMVI 843 (960)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGG---------CCSHHHHHHHHHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhh---------ccCHHHHHHHHHHHHHHHh
Confidence 234446645 677777889999999999999877552 33 78888877 8889999999999999766
Q ss_pred HHhcCCCCCCchhhHHHHHHHHHHHhhhhh
Q 007146 462 RLLGLGNPGSSLLQDCYASLMEAAVQLKEV 491 (616)
Q Consensus 462 ~Ll~~~~pg~~~ln~~~~slLe~~~~lke~ 491 (616)
.. .. .| ......+..++..++++.+.
T Consensus 844 ~~-~~-~~--~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 844 NG-QF-FQ--SKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp SC-HH-HH--HHCGGGHHHHHHHHHHHHHS
T ss_pred cc-cc-cc--hhHHHHHHHHHHHHHHHHhC
Confidence 52 10 11 12234455555666655443
No 2
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.88 E-value=7.1e-09 Score=119.61 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=91.7
Q ss_pred cchHHHHHHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcC--CccchHHHHHHHHHHHhccCCCCCCc
Q 007146 3 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSC 80 (616)
Q Consensus 3 ~G~L~~~L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~--~e~~~~~~~~sll~~l~dp~~~~~~~ 80 (616)
+|++.+.+.+..+..+..++. ++|.+....+.|++|++|||++|+|+.++ +..++..++..++++| +
T Consensus 488 l~~iae~~~~~~~~~l~~l~~--~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~-------- 556 (971)
T 2x1g_F 488 FQSVAEHFGGEEKRQIPRLMR--VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N-------- 556 (971)
T ss_dssp HHHTTTC------CHHHHHHH--HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--------
T ss_pred HHHHHhhcChhhhHHHHHHHH--HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--------
Confidence 344433333323345566555 77766522348999999999999999954 4578999999999999 4
Q ss_pred ccchhhhhHHHHHHHhcCCC--CCChhhHHHHHHhhccccc---chhhHHHHHHHHHHHhhh-hccccchHHHHHHHHH
Q 007146 81 YPVRASAAGAIVGLLENDYM--PPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAAN-ENVADHIPYIVSSLVA 153 (616)
Q Consensus 81 ~PVRv~Aa~Ai~sll~~~~~--p~~~~plLq~i~~~i~~ed---~e~~~L~~lL~tive~~~-e~iap~~~~l~~~la~ 153 (616)
.+||..|+.||..|.+++.. .|-..+|++++.+.+...+ .+...++..+.+|+.+.+ ++..||+..+++.+..
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 37999999999999987641 1244455555555555532 444455666666666543 7888888877777665
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.70 E-value=1.4e-06 Score=99.02 Aligned_cols=370 Identities=12% Similarity=0.102 Sum_probs=199.4
Q ss_pred hhcccCcccCCcchhHHHhhHHHHhhhhhcC----CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 24 SRVLPLYSVSVCLPYLVASANWILGELASCL----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 24 ~~V~P~~~~~~~sp~LrA~A~w~~gela~~~----~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
..+++... .++|.+|..|+|++|+|+... ....+..++..++++|.|++ ..||..|+.||..+.++..
T Consensus 403 ~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~------~~vr~~a~~aL~~l~~~~~ 474 (852)
T 4fdd_A 403 PHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN------KRVQEAACSAFATLEEEAC 474 (852)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHhh
Confidence 45566555 778999999999999999843 35678899999999999985 8999999999999998754
Q ss_pred C--CCChhhHHHHHHhhccccc-chhhHHHHHHHHHHHhhhhcccc--chHHHHHHHHHHHHhccCCCCCCchHHHHHHH
Q 007146 100 M--PPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVAD--HIPYIVSSLVAAISKHMHPSSEPWPQVVERGF 174 (616)
Q Consensus 100 ~--p~~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap--~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~ 174 (616)
. -|-..++++.+++.+...+ ....+++..++++++..++.+.. |++.+...|.... +.+... -+.+ ...+
T Consensus 475 ~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~-~~l~d~---~~~~-~~~~ 549 (852)
T 4fdd_A 475 TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW-NMLKDE---DKDL-FPLL 549 (852)
T ss_dssp GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH-HHSCTT---CTTH-HHHH
T ss_pred HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH-Hhcccc---cHHH-HHHH
Confidence 2 1245566666666666544 33345788999999888876643 6666555555432 223221 1223 3567
Q ss_pred HHHHHHHHHHhhhhhhhhhccccchhhhhhhhHHHHHHHHHHHHhhcccC---CCCccccCCCCcccccHHHHHHHHHHH
Q 007146 175 AALALMAQSWENFLREEVELDQSSGKWESGQAAIAKAFSALLQQAWLTHI---QPLECEVSAPPSCIDDSSMLLRSIILS 251 (616)
Q Consensus 175 ~~l~a~~~~~~~~~~d~~~~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~---~~~e~~~~P~~~~~~D~s~ll~~il~~ 251 (616)
+++..++++....-- --.+ .+.+.+-.+|+..+.... +..+..-.|-.....-+.+++..|.+.
T Consensus 550 ~~l~~i~~~~g~~~~-----------~~~~--~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~ 616 (852)
T 4fdd_A 550 ECLSSVATALQSGFL-----------PYCE--PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG 616 (852)
T ss_dssp HHHHHHHHHHGGGGH-----------HHHH--HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHH-----------HHHH--HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHH
Confidence 778777776542110 0011 112333334433321110 000000011111222223555555555
Q ss_pred ccccchhhhhhHHHHH---HHHHHHHhhhhhhhhhccchhhHHHHhhhcccCcccccchhhccCCCCCCCCCCchhHHhh
Q 007146 252 VSERNVIEELKLSELL---LVWADLIGDWHAWEETEDLSVFDCIKEIVNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEG 328 (616)
Q Consensus 252 ~t~~~~~~~~kis~l~---~~wa~~~~~w~~Wee~ed~~~~d~i~e~v~~~~~~g~~~F~~~~~~~~~a~p~~~~s~~~~ 328 (616)
+.. .+.+.+ .+-+.++..++.=...--++++.++.+++. .+| .+|. .++..
T Consensus 617 l~~-------~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~---~~~-~~~~---------------~~l~~ 670 (852)
T 4fdd_A 617 LGG-------NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTK---ACF-QHVK---------------PCIAD 670 (852)
T ss_dssp HGG-------GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHH---HCG-GGTG---------------GGHHH
T ss_pred HhH-------hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHH---Hhh-HHHH---------------HHHHH
Confidence 531 111121 122333444432112223455666666651 122 1111 13443
Q ss_pred HHHHHHHHHH-hCchhhhhhhhHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHhhhhcc
Q 007146 329 IGAFLSEAIL-QYPSATWRACSCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLC 407 (616)
Q Consensus 329 i~~fvs~ai~-~~p~a~~rAck~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~KpLIlvIs~c~~y 407 (616)
+...+.+.+. ..++.+..||.++..+..... .....++..++...++.|+. .+.+..+..-.+..|+--...
T Consensus 671 ~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~------~~~~p~~~~il~~L~~~l~~-~~~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 671 FMPILGTNLNPEFISVCNNATWAIGEISIQMG------IEMQPYIPMVLHQLVEIINR-PNTPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG------GGGGGGTHHHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHhh------HhHHHHHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHHHHh
Confidence 4445555554 455556777777665543332 23455555666665555542 111111222233444433344
Q ss_pred ChhhhhhHhhccCCCchhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Q 007146 408 YPAVVEGILKKDEDGGFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLG 465 (616)
Q Consensus 408 nP~lveqvLek~~~~gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~ 465 (616)
+|+.+-..+. .-...|.+.|.. .....||..++-||+.+|.+.|+
T Consensus 744 ~~~~~~~~l~----~~~~~~~~~l~~---------~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 744 CPQEVAPMLQ----QFIRPWCTSLRN---------IRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp CHHHHGGGHH----HHHHHHHHHHHT---------SCSSHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHhCccHH----HHHHHHHHHhcc---------ccccHHHHHHHHHHHHHHHhChH
Confidence 5554422111 125778888876 45567899999999999988333
No 4
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.52 E-value=9.4e-07 Score=101.44 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=116.8
Q ss_pred cchHHHHHHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcC--CccchHHHHHHHHHHHhccCCCCCCc
Q 007146 3 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSC 80 (616)
Q Consensus 3 ~G~L~~~L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~--~e~~~~~~~~sll~~l~dp~~~~~~~ 80 (616)
+|++.+.+....+.++..++. ++|.+. .+.|.||.+|||++|+|+.++ +...+..++..++.+|.+
T Consensus 473 l~~i~~~~~~~~~~~l~~l~~--~l~~l~--~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~-------- 540 (963)
T 2x19_B 473 FQSIAETIDVNYSDVVPGLIG--LIPRIS--ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN-------- 540 (963)
T ss_dssp HHHHTTSCCSSCCSHHHHHHH--HGGGSC--CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--------
T ss_pred HHHHHhhcCchhhHHHHHHHH--HHHhCC--CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--------
Confidence 344443333333445555544 555444 358899999999999999965 456788889999999965
Q ss_pred ccchhhhhHHHHHHHhcCC--CCCChhhHHHHHHhhccccc---chhhHHHHHHHHHHHhhh-hccccchHHHHHHHHHH
Q 007146 81 YPVRASAAGAIVGLLENDY--MPPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGAAN-ENVADHIPYIVSSLVAA 154 (616)
Q Consensus 81 ~PVRv~Aa~Ai~sll~~~~--~p~~~~plLq~i~~~i~~ed---~e~~~L~~lL~tive~~~-e~iap~~~~l~~~la~~ 154 (616)
.+||..|+.||..+.+.+. --|-+.++++.+.+.+...+ .+...++..+.+++.+.+ ++..||+..+++.+...
T Consensus 541 ~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 541 PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999998764 22366677776666555422 444456788888887775 88899998888777765
Q ss_pred HHhccCCCCCCchHHHH---HHHHHHHHHHHHHhhhhh
Q 007146 155 ISKHMHPSSEPWPQVVE---RGFAALALMAQSWENFLR 189 (616)
Q Consensus 155 ~~~~~~~~~~~~pq~ve---~~~~~l~a~~~~~~~~~~ 189 (616)
+-.....+. -+.... ..++.|..++++.....+
T Consensus 621 l~~~~~~~~--~~~~~~~~~~~l~~l~~i~~~~~~~~~ 656 (963)
T 2x19_B 621 LEKLAEEIP--NPSNKLAIVHILGLLSNLFTTLDISHH 656 (963)
T ss_dssp HHHHHSSCS--CHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 554432221 233322 457778888888765443
No 5
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.36 E-value=9.1e-06 Score=95.34 Aligned_cols=112 Identities=8% Similarity=0.121 Sum_probs=81.7
Q ss_pred cchhHHHhhHHHHhhhhhcC--CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCC------C----C
Q 007146 35 CLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYM------P----P 102 (616)
Q Consensus 35 ~sp~LrA~A~w~~gela~~~--~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~------p----~ 102 (616)
+.|.+++++||++|+|+.++ +++.+..+++.++.+|.+++ .+||..||.||..|.+++.. | |
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~------~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p 585 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH------EGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSC------HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 45667778999999999954 66789999999999999985 99999999999999997652 1 3
Q ss_pred ChhhHHHHHHhhccccc-chhhHHHHHHHHHHHhhh--hccccchHHHHHHHH
Q 007146 103 EWYPLLQVIVGRIGYED-EENSILFELLSSVVGAAN--ENVADHIPYIVSSLV 152 (616)
Q Consensus 103 ~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~--e~iap~~~~l~~~la 152 (616)
-+.++++.+...+..-+ .+...++..+.+++.+.+ +...+|+..|++.+.
T Consensus 586 ~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~ 638 (1049)
T 3m1i_C 586 FIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN 638 (1049)
T ss_dssp HHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566665544444433 344566788888887765 456666655555443
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.00 E-value=0.00052 Score=76.62 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=95.9
Q ss_pred hhcccCcccCCcchhHHHhhHHHHhhhhhcC-----CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 24 SRVLPLYSVSVCLPYLVASANWILGELASCL-----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 24 ~~V~P~~~~~~~sp~LrA~A~w~~gela~~~-----~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
..+++.+. .++|.+|.+|+|++|+++.+. +...+..++..++++|.|+ ..||..|+.||..+++..
T Consensus 414 ~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-------~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 414 PSILNLMN--DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-------PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HHHHHGGG--CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-------hHHHHHHHHHHHHHHHhc
Confidence 34444444 568999999999999999743 4678999999999999875 579999999999999875
Q ss_pred C--CC----CChhhHHHHHHhhcccccch---hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhc
Q 007146 99 Y--MP----PEWYPLLQVIVGRIGYEDEE---NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKH 158 (616)
Q Consensus 99 ~--~p----~~~~plLq~i~~~i~~ed~e---~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~ 158 (616)
. .+ +-..++++.+++.+...|.+ ....+.+|..++...++++.||+..+...+...+.+.
T Consensus 485 ~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 553 (861)
T 2bpt_A 485 AEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQT 553 (861)
T ss_dssp SSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHH
Confidence 3 12 24456667777777755522 2346899999999999999999888877777655444
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.79 E-value=0.0084 Score=67.06 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=104.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCC-c---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC----CCCChh
Q 007146 34 VCLPYLVASANWILGELASCLP-E---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY----MPPEWY 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~-e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~----~p~~~~ 105 (616)
.+.+.+|..|+|.+|.++...+ + .....+...++++|.||+ ..||..|+.+|+.+.+... .++...
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~------~~vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS------VVVRDTAAWTVGRICELLPEAAINDVYLA 450 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHCGGGTSSTTTHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhCchhcccHHHHH
Confidence 5678999999999999998444 2 245667888999999996 8899999999999998753 345788
Q ss_pred hHHHHHHhhcccccchhhHHHHHHHHHHHhhh--------------hccccchHHHHHHHHHHHHhccCCCCCCchHHHH
Q 007146 106 PLLQVIVGRIGYEDEENSILFELLSSVVGAAN--------------ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVE 171 (616)
Q Consensus 106 plLq~i~~~i~~ed~e~~~L~~lL~tive~~~--------------e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve 171 (616)
++|+.+++.+.+...=......+|..+++.++ +.+.||++.|...|...+-+. ...-+.+-.
T Consensus 451 ~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~----~~~~~~~r~ 526 (876)
T 1qgr_A 451 PLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP----DGHQNNLRS 526 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSC----SSCSTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCc----CcchhhHHH
Confidence 99999999887642112234778888888876 458899999888887644322 111234556
Q ss_pred HHHHHHHHHHHHH
Q 007146 172 RGFAALALMAQSW 184 (616)
Q Consensus 172 ~~~~~l~a~~~~~ 184 (616)
.+++++..+++..
T Consensus 527 ~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 527 SAYESLMEIVKNS 539 (876)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC
Confidence 7888888888754
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.68 E-value=0.0064 Score=69.11 Aligned_cols=139 Identities=17% Similarity=0.120 Sum_probs=106.6
Q ss_pred CcchhHHHhhHHHHhhhhhcCCc---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc---CCCCCChhhH
Q 007146 34 VCLPYLVASANWILGELASCLPE---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN---DYMPPEWYPL 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~---~~~p~~~~pl 107 (616)
.+.+..|..|+|.+|.++...++ .....+...++++|.||+ .-||..|+.+|+.+-+. ....+-..++
T Consensus 370 ~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~------~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 443 (852)
T 4fdd_A 370 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK------ALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443 (852)
T ss_dssp CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS------HHHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56789999999999999984432 356789999999999996 88999999999877663 2234477889
Q ss_pred HHHHHhhccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHh
Q 007146 108 LQVIVGRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWE 185 (616)
Q Consensus 108 Lq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~ 185 (616)
++.+++.+...+ .-....+..|..+++..+..+.||.+.|.+.|...+-+. -.......+.|+..++++..
T Consensus 444 l~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~-------~~~~~~~~~~ai~~l~~~~~ 515 (852)
T 4fdd_A 444 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY-------QHKNLLILYDAIGTLADSVG 515 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhh
Confidence 999998887655 333345788999999999999999999999988765432 13344556677777766543
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.63 E-value=0.014 Score=65.08 Aligned_cols=140 Identities=12% Similarity=0.036 Sum_probs=99.7
Q ss_pred CcchhHHHhhHHHHhhhhhcCC-c---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC----CCCChh
Q 007146 34 VCLPYLVASANWILGELASCLP-E---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY----MPPEWY 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~-e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~----~p~~~~ 105 (616)
...+..|..|+|.+|.++.... + .....+...+++.|.||+ .-||..|+-+|+.+.+... .++-..
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQS------LQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSC------HHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 5567899999999999997443 2 234567777888888985 7899999888888776532 244678
Q ss_pred hHHHHHHhhcccccchhhHHHHHHHHHHHhhh----hccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Q 007146 106 PLLQVIVGRIGYEDEENSILFELLSSVVGAAN----ENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMA 181 (616)
Q Consensus 106 plLq~i~~~i~~ed~e~~~L~~lL~tive~~~----e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~ 181 (616)
++++.+++.+++...-.......|..+++.++ +.+.||++.|...|...+-+ +++-+.+-..++.|+..+.
T Consensus 454 ~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~-----~d~~~~vr~~a~~al~~l~ 528 (861)
T 2bpt_A 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANR-----IDNEFNARASAFSALTTMV 528 (861)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTC-----SCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhC-----cCcchHHHHHHHHHHHHHH
Confidence 89998888886542112234677888888876 67889999988877653321 2333467777888888887
Q ss_pred HHH
Q 007146 182 QSW 184 (616)
Q Consensus 182 ~~~ 184 (616)
...
T Consensus 529 ~~~ 531 (861)
T 2bpt_A 529 EYA 531 (861)
T ss_dssp HHC
T ss_pred HHc
Confidence 754
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.63 E-value=7e-05 Score=83.81 Aligned_cols=122 Identities=16% Similarity=0.250 Sum_probs=92.4
Q ss_pred hcccCcccCCcchhHHHhhHHHHhhhhhcCC-----ccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 25 RVLPLYSVSVCLPYLVASANWILGELASCLP-----EDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 25 ~V~P~~~~~~~sp~LrA~A~w~~gela~~~~-----e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
.+++.+. .+.+.+|.+|+|++|+|+...+ ...+..++..++++|.|+ ..||..|+.||..+++...
T Consensus 412 ~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-------~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 412 TLIELMK--DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-------PRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhh
Confidence 4444444 6789999999999999998543 467889999999999885 5799999999999998632
Q ss_pred ----------------CCCChhhHHHHHHhhcccccch----hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHH
Q 007146 100 ----------------MPPEWYPLLQVIVGRIGYEDEE----NSILFELLSSVVGAANENVADHIPYIVSSLVAAI 155 (616)
Q Consensus 100 ----------------~p~~~~plLq~i~~~i~~ed~e----~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~ 155 (616)
-.|-..++++.+++.+...+.+ ...++.+|++++...+.++.+|+..+...+...+
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 558 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERL 558 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHH
Confidence 2236677888887777654321 1246889999999999888888777777666533
No 11
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.39 E-value=0.0065 Score=71.72 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=99.1
Q ss_pred CcchhHHHhhHHHHhhhhhcC--CccchHHHHHHHHH--HHhccCCCCCCcccchhhhhHHHHHHHhcCC--CCCChhhH
Q 007146 34 VCLPYLVASANWILGELASCL--PEDISADVYSSLLK--ALQMLDKGDTSCYPVRASAAGAIVGLLENDY--MPPEWYPL 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~--~e~~~~~~~~sll~--~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~--~p~~~~pl 107 (616)
.+.|.+|..+||++|+|+.++ .++++..++..+++ +|.+|+ ..||..|+.|+..|++.+. -.|...++
T Consensus 506 ~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~------~~V~~~a~~af~~f~~~~~~~L~~~~~~i 579 (980)
T 3ibv_A 506 HPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTN------ERVRPRAWYLFYRFVKSIKKQVVNYTESS 579 (980)
T ss_dssp CCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCC------TTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCC------hhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence 578999999999999999965 66788889999999 888886 8899999999999999886 23466677
Q ss_pred HHHHHhhccc-----ccc-----------------hhhHHHHHHHHHHHhhh---hccccchHHHHHHHHHHHHhccCCC
Q 007146 108 LQVIVGRIGY-----EDE-----------------ENSILFELLSSVVGAAN---ENVADHIPYIVSSLVAAISKHMHPS 162 (616)
Q Consensus 108 Lq~i~~~i~~-----ed~-----------------e~~~L~~lL~tive~~~---e~iap~~~~l~~~la~~~~~~~~~~ 162 (616)
|+.+-..... .+. +.-.|+..+++++...+ |+..-|+-.|++-|...+-+.+...
T Consensus 580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~ 659 (980)
T 3ibv_A 580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSD 659 (980)
T ss_dssp HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7765443221 111 23458999999998864 4555666666666555555555332
Q ss_pred CCC-chH-HHHHHHHHHHHHHHHHh
Q 007146 163 SEP-WPQ-VVERGFAALALMAQSWE 185 (616)
Q Consensus 163 ~~~-~pq-~ve~~~~~l~a~~~~~~ 185 (616)
+.. =++ -+..-+-|+..+++.+.
T Consensus 660 ~~~~~~~~~i~~~i~al~~lakgf~ 684 (980)
T 3ibv_A 660 LSALENIISVYCSLMAIGNFAKGFP 684 (980)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHTSC
T ss_pred ccCccHHHHHHHHHHHHHHHhccCC
Confidence 211 111 22334555566666543
No 12
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.26 E-value=0.01 Score=70.41 Aligned_cols=107 Identities=12% Similarity=0.151 Sum_probs=75.4
Q ss_pred cchhHHHhhHHHHhhhhhcC--CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 35 CLPYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 35 ~sp~LrA~A~w~~gela~~~--~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
+.+.+|..+||++|+|+.++ +++++..+++.++.+|.+++ -.|...|+.||..+-+.++.- ++
T Consensus 512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~------~~v~~~A~~al~~l~~~c~~~---------l~ 576 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH------EGVQDMACDTFIKIVQKCKYH---------FV 576 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHHHHHTHH---------HH
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHHHHHHHH---------hh
Confidence 34577889999999999965 77889999999999998884 349999999999999876621 00
Q ss_pred hhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 007146 113 GRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 184 (616)
Q Consensus 113 ~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~ 184 (616)
. .-..+..||++.|.+++...+.++ + ++...+.++|++.+.++.
T Consensus 577 ~---------------------~~~~e~~p~~~~il~~l~~~~~~l-----~--~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 577 I---------------------QQPRESEPFIQTIIRDIQKTTADL-----Q--PQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp S---------------------CCTTCSSCHHHHHHHTHHHHHTTS-----C--HHHHHHHHHHHHHHHTTC
T ss_pred c---------------------cCCCCCchhHHHHHHHHHHHHHhC-----C--HHHHHHHHHHHHHHHHhC
Confidence 0 001233567777777666655432 1 455567777777777653
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.21 E-value=0.0021 Score=62.10 Aligned_cols=136 Identities=19% Similarity=0.166 Sum_probs=105.1
Q ss_pred CcchhHHHhhHHHHhhhhhcCCc---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPE---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQV 110 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~ 110 (616)
.+.+-+|..|+-++|+|+.-+.. .....++..|+.+|.|++ ..||..|+.||..++++.. ...+++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~------~~vr~~a~~aL~~~~~~~~----~~~ll~~ 137 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK------PNVVTALREAIDAIYASTS----LEAQQES 137 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC------HHHHHHHHHHHHHHHTTSC----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHcCC----HHHHHHH
Confidence 56778999999999999974433 455678889999999996 8999999999999998752 5678888
Q ss_pred HHhhccccc-chhhHHHHHHHHHHHhhh-h-ccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhh
Q 007146 111 IVGRIGYED-EENSILFELLSSVVGAAN-E-NVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWEN 186 (616)
Q Consensus 111 i~~~i~~ed-~e~~~L~~lL~tive~~~-e-~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~ 186 (616)
+...+.... .-..-.+..|..++..++ + ...+|.+.++..|...+ -|+.+.|-+.++.++..+++.+..
T Consensus 138 l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l-------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 138 IVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL-------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH-------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh-------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 888887665 222335777788777764 3 34567777776666533 478889999999999999988865
No 14
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.014 Score=57.94 Aligned_cols=140 Identities=13% Similarity=0.127 Sum_probs=107.1
Q ss_pred CcchhHHHhhHHHHhhhhhcCC--c---cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC--CC-CChh
Q 007146 34 VCLPYLVASANWILGELASCLP--E---DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY--MP-PEWY 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~--e---~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~--~p-~~~~ 105 (616)
.+.+.+|..||=++|+++.-+. . .....++..++..+.|.. -.||-.|..||..++++.- .+ +...
T Consensus 72 D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk------~~V~~aa~~al~~i~~~~~~~~~~~~l~ 145 (249)
T 2qk1_A 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKK------PSVIEAIRKALLTICKYYDPLASSGRNE 145 (249)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCC------HHHHHHHHHHHHHHHHHSCTTCTTCTTH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHccccccCCcHH
Confidence 5677889999999999998553 2 234567788888899885 7799999999999999752 22 1266
Q ss_pred hHHHHHHhhccccc-chhhHHHHHHHHHHHhhh---hccccch-HHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHH
Q 007146 106 PLLQVIVGRIGYED-EENSILFELLSSVVGAAN---ENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALM 180 (616)
Q Consensus 106 plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~---e~iap~~-~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~ 180 (616)
++|+.++..+.+.. .-..-.+.+|..+++..+ +.+.+|+ +.|+..|...+ -|+-+.|-+.|+++|+++
T Consensus 146 ~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l-------~D~~~~VR~aA~~~l~~i 218 (249)
T 2qk1_A 146 DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV-------NDTQPAIRTIGFESFAIL 218 (249)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-------TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHH
Confidence 88888888887765 233335788888888887 4566777 77777766533 577889999999999999
Q ss_pred HHHHhh
Q 007146 181 AQSWEN 186 (616)
Q Consensus 181 ~~~~~~ 186 (616)
.++..+
T Consensus 219 ~~~vG~ 224 (249)
T 2qk1_A 219 IKIFGM 224 (249)
T ss_dssp HHHHCS
T ss_pred HHHhCH
Confidence 988875
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.51 E-value=0.0059 Score=72.28 Aligned_cols=138 Identities=14% Similarity=0.108 Sum_probs=107.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCC--------CChh
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP--------PEWY 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p--------~~~~ 105 (616)
.+.+.+|..|.=.+|.++...++.....+...++.+|.|++ -.||..|+.+|+.+.++...+ ..|.
T Consensus 59 d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~------~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~ 132 (1230)
T 1u6g_C 59 DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDK------EQLRDISSIGLKTVIGELPPASSGSALAANVCK 132 (1230)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSS------SHHHHHHHHHHHHHHHHCC-----CCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHhCCCcccccchHHHHHH
Confidence 67889999999999999987777788889999999999996 789999999999999875433 1499
Q ss_pred hHHHHHHhhccc-cc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 007146 106 PLLQVIVGRIGY-ED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 183 (616)
Q Consensus 106 plLq~i~~~i~~-ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~ 183 (616)
.+++.+++.+.. ++ .-....+..|..+++.+++.+.||.+.+...|.. .+- ++-+.|-+++..||..++..
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~----~L~---~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP----QLT---SPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG----GGG---CSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH----HHc---CCcHHHHHHHHHHHHHHHHh
Confidence 999999999874 43 1222347788888888899999999887777654 331 22357778888888877765
Q ss_pred H
Q 007146 184 W 184 (616)
Q Consensus 184 ~ 184 (616)
.
T Consensus 206 ~ 206 (1230)
T 1u6g_C 206 C 206 (1230)
T ss_dssp C
T ss_pred c
Confidence 4
No 16
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.13 E-value=0.99 Score=49.55 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=57.0
Q ss_pred CCcchhHHHhhHHHHhhhhhcCCccch-HHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCC---CChhhHH
Q 007146 33 SVCLPYLVASANWILGELASCLPEDIS-ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP---PEWYPLL 108 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~~e~~~-~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p---~~~~plL 108 (616)
..++||+|.+|+|.++.++...|+..- ......+.++|.|++ .-||..|+.||..+.+++-.. .-..+.+
T Consensus 131 ~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d------~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~ 204 (591)
T 2vgl_B 131 KDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSN------PMVVANAVAALSEISESHPNSNLLDLNPQNI 204 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSC------HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCC------hhHHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence 378999999999999999985555332 247788889999996 889999999999988765321 1223345
Q ss_pred HHHHhhcc
Q 007146 109 QVIVGRIG 116 (616)
Q Consensus 109 q~i~~~i~ 116 (616)
+++++.+.
T Consensus 205 ~~Ll~~l~ 212 (591)
T 2vgl_B 205 NKLLTALN 212 (591)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 55555543
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.12 E-value=0.015 Score=61.67 Aligned_cols=135 Identities=7% Similarity=-0.067 Sum_probs=91.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 113 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~ 113 (616)
...+..|..|+-++|.++...++.....+...+.+.+.|++ .-||..|+.+|+.+.+..-.+..+..+++.+..
T Consensus 137 ~~~~~~R~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~------~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 210 (588)
T 1b3u_A 137 GDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN 210 (588)
T ss_dssp CSSHHHHHHHGGGHHHHTTTSCHHHHHHHHHHHHHHHTCSC------HHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHH
Confidence 45678899999999999987777777788888888889986 889999999999999875433234566777776
Q ss_pred hcccccch-hhHHHHHHHHHHHhhhh-ccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 007146 114 RIGYEDEE-NSILFELLSSVVGAANE-NVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 184 (616)
Q Consensus 114 ~i~~ed~e-~~~L~~lL~tive~~~e-~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~ 184 (616)
....++.. ....+..|..+.+..+. ...+++..+..++. -++.++|-..+..+|..++...
T Consensus 211 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA----------EDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHH----------TCSSHHHHHHHHHTHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc----------cCCCHHHHHHHHHHHHHHHHHh
Confidence 66655522 22236777777776543 23333322222222 2455667677777777776654
No 18
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.00 E-value=0.32 Score=55.81 Aligned_cols=138 Identities=12% Similarity=0.053 Sum_probs=92.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHH---hccCCCCCCcccchhhhhHHHHHHHhcC-CCCCChhhHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKAL---QMLDKGDTSCYPVRASAAGAIVGLLEND-YMPPEWYPLLQ 109 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l---~dp~~~~~~~~PVRv~Aa~Ai~sll~~~-~~p~~~~plLq 109 (616)
.+...-|-.|+|++|.++...++.. .+....++..| .++ ...||..+.-+|+.+-+.- ..|.-+.++|+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~-~~~l~~l~~~l~~l~~~------~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~ 532 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNY-SDVVPGLIGLIPRISIS------NVQLADTVMFTIGALSEWLADHPVMINSVLP 532 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSC-CSHHHHHHHHGGGSCCC------SHHHHHHHHHHHHHTHHHHHHCHHHHTTTHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchh-hHHHHHHHHHHHhCCCC------cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4455778889999999998443211 12233444433 322 3569988888887665431 13456888999
Q ss_pred HHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 007146 110 VIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSW 184 (616)
Q Consensus 110 ~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~ 184 (616)
++++.+.+.. =...-..+|.++++..++++.||++.|.+.|...+.+- +.=+...+..++|+..++.+.
T Consensus 533 ~l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~-----~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 533 LVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ-----IHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT-----CSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC-----CCChHHHHHHHHHHHHHHhcC
Confidence 9999886633 12234778889999999999999999999988655431 112466777788888877543
No 19
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.98 E-value=0.005 Score=68.53 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=87.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 113 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~ 113 (616)
.+.|+.|+.|-+.+|.++ ++++...+...+.++|.|++ .-||-.|+.|+..+.+.+ |.....+++.+..
T Consensus 118 ~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~------~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~ 186 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSN------SYLRKKAALCAVHVIRKV--PELMEMFLPATKN 186 (618)
T ss_dssp CSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCC------HHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTT
T ss_pred CCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHH
Confidence 788999999999999887 46788889999999999996 899999999999999854 5444456666666
Q ss_pred hcccccchhhHH---HHHHHHHHHhhhh---ccccchHHHHHHHHHHHHhccC------CCCCCchHHH
Q 007146 114 RIGYEDEENSIL---FELLSSVVGAANE---NVADHIPYIVSSLVAAISKHMH------PSSEPWPQVV 170 (616)
Q Consensus 114 ~i~~ed~e~~~L---~~lL~tive~~~e---~iap~~~~l~~~la~~~~~~~~------~~~~~~pq~v 170 (616)
.+.+.+ ..+. +.+|..|.+...+ ...+.+|.+++.|..-...-.+ ..++||-|+.
T Consensus 187 lL~D~d--~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~ 253 (618)
T 1w63_A 187 LLNEKN--HGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR 253 (618)
T ss_dssp STTCCC--HHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred HhCCCC--HhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence 665544 3333 4555555544332 3345567777666543322222 2578999986
No 20
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.97 E-value=0.019 Score=55.30 Aligned_cols=116 Identities=13% Similarity=0.091 Sum_probs=88.4
Q ss_pred hhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC----
Q 007146 24 SRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY---- 99 (616)
Q Consensus 24 ~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~---- 99 (616)
..++..+. .+.+.+|..|+=.+..+..+.+ +..++..++.+|.+++ ..||..+...|..++.+..
T Consensus 101 p~ll~~l~--d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~------~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 101 PSLLEKFK--EKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKN------PSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHGGG--CCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCC------hHHHHHHHHHHHHHHHHcCCCCc
Confidence 44555555 5788999999999998887654 5778999999999886 6899999999999887642
Q ss_pred CCCChhhHHHHHHhhccccc-chhhHHHHHHHHHHHhhhhc-cccchHHHHHH
Q 007146 100 MPPEWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANEN-VADHIPYIVSS 150 (616)
Q Consensus 100 ~p~~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~-iap~~~~l~~~ 150 (616)
..+.+..+++.+++.+++.. .-...-+.+|.+++...+++ +.||++.|-..
T Consensus 170 ~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~ 222 (242)
T 2qk2_A 170 NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPL 222 (242)
T ss_dssp CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHH
T ss_pred cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHH
Confidence 23467788888888887666 33344578888888777776 88888776443
No 21
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.85 E-value=0.015 Score=68.83 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=92.2
Q ss_pred HhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC--C
Q 007146 23 RSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY--M 100 (616)
Q Consensus 23 ~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~--~ 100 (616)
..++++.+. .+.+.+|.+|+-.+|.++...++..+..+...+++.|.+++ +..+|..|..+|+.+.+... .
T Consensus 177 l~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~-----~~~~r~~a~~~l~~l~~~~~~~~ 249 (1230)
T 1u6g_C 177 LTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-----SMSTTRTYIQCIAAISRQAGHRI 249 (1230)
T ss_dssp HHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC-----SSCSCTTHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHHHhHHHH
Confidence 355666665 56789999999999999998887778888999999998874 35799999999999998642 1
Q ss_pred CCChhhHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 007146 101 PPEWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLV 152 (616)
Q Consensus 101 p~~~~plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~~~la 152 (616)
-+-...+++.+++....++.+ ....++.++.++...++++.||.+.|...|-
T Consensus 250 ~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll 302 (1230)
T 1u6g_C 250 GEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICL 302 (1230)
T ss_dssp TTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHH
Confidence 125566777777776655532 2356889999999999999999888776644
No 22
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.78 E-value=0.17 Score=60.63 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=50.8
Q ss_pred hhHHHhhHHHHhhhhhcC--CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 37 PYLVASANWILGELASCL--PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 37 p~LrA~A~w~~gela~~~--~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
+.++++.||++|+|..++ +...+..+.+-|+..|.+++ -.|+-.|+.|+..+-+.|.
T Consensus 540 ~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~------~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 540 AIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETH------DGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCS------TTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHH
Confidence 357777899999999976 78899999999999999886 7899999999999998887
No 23
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.71 E-value=0.024 Score=60.08 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=80.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc-chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPED-ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~-~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
.+...+|..|+..+|.++..++.. ....++..+++.|.|++ ..||-.|+.+|+.+++..-...-...+++.+.
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~ 486 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV------YAIREAATSNLKKLVEKFGKEWAHATIIPKVL 486 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS------HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 456678888888888888744332 33467788888888885 77899999988888876321111235666666
Q ss_pred hhccccc-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 007146 113 GRIGYED-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 183 (616)
Q Consensus 113 ~~i~~ed-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~ 183 (616)
+.....+ .-....+.+++.+.+..+.+. |.+.+...| ++.+ -++-|.|-..+..+|..+++.
T Consensus 487 ~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l----~~~l---~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTV----LRMA---GDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHH----HHGG---GCSCHHHHHHHHHHHHHHGGG
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHH----HhhC---CCCCchHHHHHHHHHHHHHHH
Confidence 5544333 112224667777777665442 333333322 2332 245566666666666666543
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.66 E-value=0.052 Score=59.78 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=71.5
Q ss_pred HHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 20 NLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 20 ~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
.++.+.+.-.++ .+.|++|+.|--.+ +++..+++...+...+.++|.|++ .-||-.|+.||..+.+.+
T Consensus 85 ~l~~n~l~kdL~--~~n~~ir~~AL~~L---~~i~~~~~~~~l~~~l~~~L~d~~------~~VRk~A~~al~~i~~~~- 152 (591)
T 2vgl_B 85 IMAVNSFVKDCE--DPNPLIRALAVRTM---GCIRVDKITEYLCEPLRKCLKDED------PYVRKTAAVCVAKLHDIN- 152 (591)
T ss_dssp HTTHHHHGGGSS--SSSHHHHHHHHHHH---HTCCSGGGHHHHHHHHHHHSSCSC------HHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHcCCCC------hHHHHHHHHHHHHHHhhC-
Confidence 444455555455 78899999996555 445588899999999999999996 899999999999999954
Q ss_pred CCCChh--hHHHHHHhhcccccchhhHHHHHHHHHHH
Q 007146 100 MPPEWY--PLLQVIVGRIGYEDEENSILFELLSSVVG 134 (616)
Q Consensus 100 ~p~~~~--plLq~i~~~i~~ed~e~~~L~~lL~tive 134 (616)
|..+. .+++.+...+.+.+ ..+....+..+.+
T Consensus 153 -p~~~~~~~~~~~l~~lL~d~d--~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 153 -AQMVEDQGFLDSLRDLIADSN--PMVVANAVAALSE 186 (591)
T ss_dssp -CCCHHHHHHHHHHHHTTSCSC--HHHHHHHHHHHHH
T ss_pred -hhhcccccHHHHHHHHhCCCC--hhHHHHHHHHHHH
Confidence 54444 37788888887554 3344333333333
No 25
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.023 Score=56.37 Aligned_cols=139 Identities=8% Similarity=0.082 Sum_probs=94.8
Q ss_pred ccchHHHHHH-hh-ChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhhcCCc----cchHHHHHHHHHHHhccCC
Q 007146 2 AYGGLQEFLR-EQ-KSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQMLDK 75 (616)
Q Consensus 2 a~G~L~~~L~-~~-~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e----~~~~~~~~sll~~l~dp~~ 75 (616)
++|.|+..|+ .. .+.|...+ ...||..+. ...+-+|..|.=.+-.+....++ .++..++..|+.+|..++
T Consensus 84 al~~la~~l~~~~f~~~y~~~l-lp~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~- 159 (249)
T 2qk1_A 84 SVELICDKLKTPGFSKDYVSLV-FTPLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKT- 159 (249)
T ss_dssp HHHHHHHHHCTTTSCHHHHHHH-HHHHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSS-
T ss_pred HHHHHHHhcccccccHHHHHHH-HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCC-
Confidence 3455665565 21 11344443 334555555 45567777777777666664432 236689999999999886
Q ss_pred CCCCcccchhhhhHHHHHHHhcCCCCC-----Ch-hhHHHHHHhhcccccchhh-HHHHHHHHHHHhhhhc-cccchHHH
Q 007146 76 GDTSCYPVRASAAGAIVGLLENDYMPP-----EW-YPLLQVIVGRIGYEDEENS-ILFELLSSVVGAANEN-VADHIPYI 147 (616)
Q Consensus 76 ~~~~~~PVRv~Aa~Ai~sll~~~~~p~-----~~-~plLq~i~~~i~~ed~e~~-~L~~lL~tive~~~e~-iap~~~~l 147 (616)
.+||..+...|+.++++...+| .+ .++++.+++.+.+.+.+-+ .-+.+|+++....+++ +.||++.|
T Consensus 160 -----~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 160 -----PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp -----HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred -----hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 7999999999999999877531 24 5677777777777664422 2378899999888875 99999887
Q ss_pred HH
Q 007146 148 VS 149 (616)
Q Consensus 148 ~~ 149 (616)
-.
T Consensus 235 d~ 236 (249)
T 2qk1_A 235 DN 236 (249)
T ss_dssp CH
T ss_pred hH
Confidence 43
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.58 E-value=0.012 Score=60.43 Aligned_cols=138 Identities=13% Similarity=0.195 Sum_probs=85.8
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccch----HHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChh----
Q 007146 34 VCLPYLVASANWILGELASCLPEDIS----ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY---- 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~----~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~---- 105 (616)
.+.+.+|..|+|++|.++...++... ..+...+++.|.+++ ..||..|+.||+.+..... |....
T Consensus 287 ~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~------~~v~~~a~~~L~~l~~~~~-~~~~~~l~~ 359 (450)
T 2jdq_A 287 SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE------FRTRKEAAWAITNATSGGS-AEQIKYLVE 359 (450)
T ss_dssp CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 56789999999999999864332211 256778899999885 7899999999999998642 21222
Q ss_pred -hHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhc-------cccchHHHHHHH-HHHHHhccCCCCCCchHHHHHHHH
Q 007146 106 -PLLQVIVGRIGYEDEE-NSILFELLSSVVGAANEN-------VADHIPYIVSSL-VAAISKHMHPSSEPWPQVVERGFA 175 (616)
Q Consensus 106 -plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~-------iap~~~~l~~~l-a~~~~~~~~~~~~~~pq~ve~~~~ 175 (616)
.+++.++..+...+.+ ....+..|..+++.+... +.+|...|.+.= -..+.++. -.+.++|.+.++.
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~---~~~~~~v~~~a~~ 436 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ---SHENQEIYQKAFD 436 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHH---CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHH---cCCCHHHHHHHHH
Confidence 2556777777766532 112366777777766542 445665553211 11122222 1234677777666
Q ss_pred HHHHHH
Q 007146 176 ALALMA 181 (616)
Q Consensus 176 ~l~a~~ 181 (616)
+|.-++
T Consensus 437 ~l~~~~ 442 (450)
T 2jdq_A 437 LIEHYF 442 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 555444
No 27
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.36 E-value=0.22 Score=50.84 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=93.9
Q ss_pred cchhHHHhhHHHHhhhh---------------hcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 35 CLPYLVASANWILGELA---------------SCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 35 ~sp~LrA~A~w~~gela---------------~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
..+.+|..|+=+++.+- ..++++....+-+.++.+|.+++ .-| -.++.+|+.+...+.
T Consensus 49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~------~~v-~~~~~~i~~ia~~~~ 121 (462)
T 1ibr_B 49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET------YRP-SSASQCVAGIACAEI 121 (462)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC------SSS-CSHHHHHHHHHHHHG
T ss_pred CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC------chh-hHHHHHHHHHHHHhc
Confidence 35688888888887763 34678888889999999999985 456 778889999988764
Q ss_pred CCCChhhHHHHHHhhcccc--c-chhhHHHHHHHHHHHhh-hhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHH
Q 007146 100 MPPEWYPLLQVIVGRIGYE--D-EENSILFELLSSVVGAA-NENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFA 175 (616)
Q Consensus 100 ~p~~~~plLq~i~~~i~~e--d-~e~~~L~~lL~tive~~-~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~ 175 (616)
.-..|..+++.+++.+.+. + .-....+.+|..+++.+ ++.+.+|++.+...+...+ + .+++-+.|-..++.
T Consensus 122 ~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l-~----~~~~~~~vr~~a~~ 196 (462)
T 1ibr_B 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-R----KEEPSNNVKLAATN 196 (462)
T ss_dssp GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHH-S----TTCCCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHh-C----CCCCCHHHHHHHHH
Confidence 3247888999988888776 4 22234588899999876 6667788888777665432 2 12234556555555
Q ss_pred HHHH
Q 007146 176 ALAL 179 (616)
Q Consensus 176 ~l~a 179 (616)
++..
T Consensus 197 ~l~~ 200 (462)
T 1ibr_B 197 ALLN 200 (462)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.25 E-value=0.033 Score=59.63 Aligned_cols=139 Identities=14% Similarity=0.248 Sum_probs=87.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccc----hHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh-h---
Q 007146 34 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW-Y--- 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~----~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~-~--- 105 (616)
.+.+.+|..|+|++|.++...++.. ...+...|++.|.+++ ..||..|+.||+.+...+...++. .
T Consensus 352 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~aL~~l~~~~~~~~~~~~~l~ 425 (530)
T 1wa5_B 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE------YKTKKEACWAISNASSGGLQRPDIIRYLV 425 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHTTTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4578999999999999987543321 1245678888898875 899999999999999875321121 1
Q ss_pred --hHHHHHHhhcccccch-hhHHHHHHHHHHHhhhh-------ccccchHHHHHH-HHHHHHhccCCCCCCchHHHHHHH
Q 007146 106 --PLLQVIVGRIGYEDEE-NSILFELLSSVVGAANE-------NVADHIPYIVSS-LVAAISKHMHPSSEPWPQVVERGF 174 (616)
Q Consensus 106 --plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e-------~iap~~~~l~~~-la~~~~~~~~~~~~~~pq~ve~~~ 174 (616)
.+++.++..+...+.+ ....+..|..++..+.. .+.+|...|... ....+.++. -.+.+.|.+.+.
T Consensus 426 ~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~---~~~~~~v~~~a~ 502 (530)
T 1wa5_B 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ---QNENDKIYEKAY 502 (530)
T ss_dssp HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG---GCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHH---cCCCHHHHHHHH
Confidence 1455667666665522 12336677777776654 245566555443 122333333 245677888766
Q ss_pred HHHHHHH
Q 007146 175 AALALMA 181 (616)
Q Consensus 175 ~~l~a~~ 181 (616)
.+|.-++
T Consensus 503 ~il~~~~ 509 (530)
T 1wa5_B 503 KIIETYF 509 (530)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
Confidence 6554433
No 29
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.23 Score=56.36 Aligned_cols=136 Identities=8% Similarity=0.013 Sum_probs=72.3
Q ss_pred hCchhhhhhh-hHHHHHhhCCCccccchhhHHhHHHHHHHHHHHhhhhhcCCCCCchhhHHHHHhhhhccChhhhhhHhh
Q 007146 339 QYPSATWRAC-SCVHTLLHVPKYSFETEGVKQSLTISFSCAAFSRFRAIQSKPSSLWKPVVLAISSCYLCYPAVVEGILK 417 (616)
Q Consensus 339 ~~p~a~~rAc-k~~h~vLh~~~~s~~~eg~~~~~~~~f~~~A~~rl~~~~s~~~~l~KpLIlvIs~c~~ynP~lveqvLe 417 (616)
..+-.--+.| .|++++|..-+.-.-.+.+++.++. -|..+.|+-..++.+.+..+.+.|...|.-..+ ++
T Consensus 125 ~Vs~Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~--------FL~~LvSa~~~yl~~vl~mLV~~F~~~~~~~~~-~H 195 (649)
T 3tj1_A 125 NINRIESSRGTFLIQSIINFEKWWELPPHTLSKYIY--------FIKILCSSIPKWWQDVSMILVSCFILPIKQTVC-HH 195 (649)
T ss_dssp TGGGGCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHH--------HHHHHHHHCGGGHHHHHHHHHHGGGSCHHHHHH-HH
T ss_pred hhhhcCchhHHHHHHHHhCCchhccCCHHHHHHHHH--------HHHHHHhccHHHHHHHHHHHHHhccCCCcccHH-HH
Confidence 3333334677 5999999883322222333333322 222233444558888777766777665543221 11
Q ss_pred ccCCC---chhhhHHHHHhhccCCCCCCcchhhhHHHHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHhhhh
Q 007146 418 KDEDG---GFALWGSALAFLCSSSLEPRLSLESEIKLAVLTLAKVVERLLGLGNPGSSLLQDCYASLMEAAVQLKE 490 (616)
Q Consensus 418 k~~~~---gf~iWfs~La~v~~s~~~p~l~~e~e~Kl~vl~L~svi~~Ll~~~~pg~~~ln~~~~slLe~~~~lke 490 (616)
..-.. -++...+.|..+=.+.|++.-......-..+=.|+++++-.| ..-..++.-+++.++++.-
T Consensus 196 ~~L~~Il~lvP~s~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~Y~P-------eL~~~Il~LIierlikiDV 264 (649)
T 3tj1_A 196 DMLKYFLRMIPSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCS-------ELGFQIWSLLIEKIISIDV 264 (649)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHHCG-------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHhhch-------HHHHHHHHHHHHHHHHhhh
Confidence 11111 156667777766677788764444444445566666655422 2335556666666666543
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.07 E-value=0.017 Score=59.10 Aligned_cols=137 Identities=16% Similarity=0.100 Sum_probs=80.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCc----cchHHHHHHHHHHHhc-cCCCCCCcccchhhhhHHHHHHHhcCCCCC-Ch--h
Q 007146 34 VCLPYLVASANWILGELASCLPE----DISADVYSSLLKALQM-LDKGDTSCYPVRASAAGAIVGLLENDYMPP-EW--Y 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e----~~~~~~~~sll~~l~d-p~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~-~~--~ 105 (616)
++.|-+|..|+|++|.++.--|+ ..-..+...|++.|.. |+ ..||..|+.||++++++..... .+ .
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~------~~v~~~A~~ALsnl~~~~~~~~~~~~~~ 166 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDAC------DTVRVKALFAISCLVREQEAGLLQFLRL 166 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSC------HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCC------HHHHHHHHHHHHHHHcCCcHHHHHHHHC
Confidence 78889999999999999863322 1122477888999984 43 6799999999999998653110 11 1
Q ss_pred hHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccch-HHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 007146 106 PLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHI-PYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 183 (616)
Q Consensus 106 plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~-~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~ 183 (616)
..++.++..+.+.+.. ....+.+|..+.....+.+.-.+ -+.+..|+ +++.. +-+++.+.++.||..+.+.
T Consensus 167 ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv----~LL~~---~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 167 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV----ALVRT---EHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH----HHHTS---CCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH----HHHcC---CChhHHHHHHHHHHHHHhC
Confidence 2444555555554421 11135556666554333222111 12222222 22221 2468888888888777753
No 31
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.73 E-value=0.12 Score=52.79 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=87.0
Q ss_pred chhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC---CCCChhhHHHHHH
Q 007146 36 LPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY---MPPEWYPLLQVIV 112 (616)
Q Consensus 36 sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~---~p~~~~plLq~i~ 112 (616)
.+-+|..|+++++.++...++.....+...+...|.+++ .-||-.|..||+.+.+... ..+.+..+++.++
T Consensus 341 ~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~------~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~ 414 (462)
T 1ibr_B 341 DWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPD------WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414 (462)
T ss_dssp CCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSS------HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 446899999999999998888777888888889999886 7899999999999998543 1235567888888
Q ss_pred hhccccc-chhhHHHHHHHHHHHhhhhcc--ccchHHHHHHHH
Q 007146 113 GRIGYED-EENSILFELLSSVVGAANENV--ADHIPYIVSSLV 152 (616)
Q Consensus 113 ~~i~~ed-~e~~~L~~lL~tive~~~e~i--ap~~~~l~~~la 152 (616)
+.+.... .=....+.+|+.+.+.++..+ .+|++.+...|-
T Consensus 415 ~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 8887665 222334888999999998877 468877777654
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=94.16 E-value=0.32 Score=53.99 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=48.2
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
.++||+|-+|++.++.++...|+ .....+..+.++|.|+| .-|+..|+.+|..+.+++
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~lL~D~d------~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATKNLLNEKN------HGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTSTTCCC------HHHHHHHHHHHHHHCCSH
T ss_pred CCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHhCCCC------HhHHHHHHHHHHHHHHhC
Confidence 68899999999999999985554 44567777888888986 889999999999987654
No 33
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.71 E-value=0.25 Score=45.54 Aligned_cols=48 Identities=31% Similarity=0.231 Sum_probs=34.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
.+.|.+|..|.|.+|++.. + .+...++++|.|++ .-||..|+.||+.+
T Consensus 56 ~~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~d~~------~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGD---E----RAVEPLIKALKDED------GWVRQSAAVALGQI 103 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC---G----GGHHHHHHHTTCSS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCC---H----HHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 5567888888888887753 1 34566777777775 66888888887775
No 34
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=93.03 E-value=0.27 Score=45.66 Aligned_cols=48 Identities=29% Similarity=0.206 Sum_probs=36.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
.+.|.+|..|.|.+|++.. ..+...++++|.|++ .-||..|+.||+.+
T Consensus 61 ~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGD-------ERAVEPLIKALKDED------GWVRQSAAVALGQI 108 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCC-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 4577888888888888763 135567777888875 77888888888876
No 35
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=92.75 E-value=0.16 Score=56.68 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=85.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHH--hccCCCCCCcccchhhhhHHHHHHHhcCC---CCCChhhHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKAL--QMLDKGDTSCYPVRASAAGAIVGLLENDY---MPPEWYPLL 108 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l--~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~---~p~~~~plL 108 (616)
.+.|+.|+.|-=.+|.+ ..+++...+...+.++| .|++ .-||=.|+.|+..+.+.+- .++.|.+.|
T Consensus 122 ~~n~~ir~lALr~L~~i---~~~e~~~~l~~~v~~~l~~~d~~------~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l 192 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANV---GSREMAEAFAGEIPKILVAGDTM------DSVKQSAALCLLRLYRTSPDLVPMGDWTSRV 192 (621)
T ss_dssp SCCHHHHHHHHHHHHHH---CCHHHHHHHTTHHHHHHHCSSSC------HHHHHHHHHHHHHHHHHCGGGCCCCSCHHHH
T ss_pred CCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHHHHhChhhcCchhHHHHH
Confidence 77889999998777665 35779999999999999 8986 8899999999999999643 112455555
Q ss_pred HHHHhhcccccchhhHH---HHHHHHHHHhhhhccccchHHHHHHHHHHHHhc-cC-------CCCCCchHHH
Q 007146 109 QVIVGRIGYEDEENSIL---FELLSSVVGAANENVADHIPYIVSSLVAAISKH-MH-------PSSEPWPQVV 170 (616)
Q Consensus 109 q~i~~~i~~ed~e~~~L---~~lL~tive~~~e~iap~~~~l~~~la~~~~~~-~~-------~~~~~~pq~v 170 (616)
.. .+++.+ .... +.+|..|...-++...+++|.+++.|.+-+... .| ..++||-|+.
T Consensus 193 ~~---lL~d~d--~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 193 VH---LLNDQH--LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp HH---HTTCSC--HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred HH---HhCCCC--ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 54 444333 3333 556666766666666677887777766533221 21 1237999987
No 36
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=92.56 E-value=6.8 Score=45.86 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=81.4
Q ss_pred cchhHHHhhHHHHhhhhhcCCcc---c-hHHHHHHHHHHHh-----ccCCCCCCcccchhhhh---HHHHHHHhcCCCCC
Q 007146 35 CLPYLVASANWILGELASCLPED---I-SADVYSSLLKALQ-----MLDKGDTSCYPVRASAA---GAIVGLLENDYMPP 102 (616)
Q Consensus 35 ~sp~LrA~A~w~~gela~~~~e~---~-~~~~~~sll~~l~-----dp~~~~~~~~PVRv~Aa---~Ai~sll~~~~~p~ 102 (616)
....-|-.|+|.+|.++....+. . ...+...++.... || ..-||..+. |..+.++.+. |.
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~------~~~v~~~~~~~lgry~~~~~~~--~~ 536 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN------KAVVASDIMYVVGQYPRFLKAH--WN 536 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH------HHHHHHHHHHHHHHCHHHHHHC--HH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc------hHHHHHHHHHHHHHHHHHHHhH--HH
Confidence 34467889999999998855433 2 3444444444221 23 133343343 4444556553 55
Q ss_pred ChhhHHHHHHhhccccc-chhhHHHHHHHHHHHhhhhccc--------cchHHHHHHHHHHHHhccCCCCCCchHHHHHH
Q 007146 103 EWYPLLQVIVGRIGYED-EENSILFELLSSVVGAANENVA--------DHIPYIVSSLVAAISKHMHPSSEPWPQVVERG 173 (616)
Q Consensus 103 ~~~plLq~i~~~i~~ed-~e~~~L~~lL~tive~~~e~ia--------p~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~ 173 (616)
-+.++|+++++.+.+.. .=.+.-..++..+++..+.++. ||++.|.++|...+.+ ++ ++-...-
T Consensus 537 ~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-~~------~~~~~~~ 609 (1049)
T 3m1i_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQ------PQQVHTF 609 (1049)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-SC------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-CC------HHHHHHH
Confidence 78889999999887643 1122346677788888777765 9999999998865444 21 2233445
Q ss_pred HHHHHHHHHH
Q 007146 174 FAALALMAQS 183 (616)
Q Consensus 174 ~~~l~a~~~~ 183 (616)
++|+..+..+
T Consensus 610 ~eai~~ii~~ 619 (1049)
T 3m1i_C 610 YKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 5666666543
No 37
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.51 E-value=0.13 Score=44.97 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=41.7
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
.+.|.+|+.|+|.+|++.. ..+...|+++|.|++ .-||..|+.||+.+
T Consensus 53 d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~~------~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDDS------GFVRSGAARSLEQI 100 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHCC------THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCCC------HHHHHHHHHHHHHh
Confidence 5788999999999999874 457888899999996 88999999999986
No 38
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.34 E-value=0.11 Score=49.11 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=88.0
Q ss_pred hHHHHHHhhChHHHHHHHHhhccc----CcccCCcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCC
Q 007146 5 GLQEFLREQKSEFTANLVRSRVLP----LYSVSVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKG 76 (616)
Q Consensus 5 ~L~~~L~~~~~~~~~~l~~~~V~P----~~~~~~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~ 76 (616)
+|..++.. ..+....++...++| ... .+.+-+|..|+|+++.++.-.++. .-..+...+++.|.+++
T Consensus 35 ~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-- 109 (252)
T 4db8_A 35 KFSQILSD-GNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-- 109 (252)
T ss_dssp HHHHHHHH-HHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC--
T ss_pred HHHHHHcC-CCchHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC--
Confidence 34444444 222334444433333 333 556899999999999998633221 11226788899999985
Q ss_pred CCCcccchhhhhHHHHHHHhcCCCC-CCh--hhHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccch-HHHHHHH
Q 007146 77 DTSCYPVRASAAGAIVGLLENDYMP-PEW--YPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHI-PYIVSSL 151 (616)
Q Consensus 77 ~~~~~PVRv~Aa~Ai~sll~~~~~p-~~~--~plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~-~~l~~~l 151 (616)
..||..|+.+|+++..+...- ..+ ...++.+++.+...+.+ ....+.+|..+.....+.....+ .+++
T Consensus 110 ----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i--- 182 (252)
T 4db8_A 110 ----EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL--- 182 (252)
T ss_dssp ----HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH---
T ss_pred ----HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCH---
Confidence 799999999999997654211 000 12566777777666522 11224455554433222211100 1111
Q ss_pred HHHHHhccCCCCCCchHHHHHHHHHHHHHH
Q 007146 152 VAAISKHMHPSSEPWPQVVERGFAALALMA 181 (616)
Q Consensus 152 a~~~~~~~~~~~~~~pq~ve~~~~~l~a~~ 181 (616)
..+++++. .+-+.+.+.+..+|..+.
T Consensus 183 -~~L~~ll~---~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 183 -PALVQLLS---SPNEQILQEALWALSNIA 208 (252)
T ss_dssp -HHHHHGGG---CSSHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHC---CCCHHHHHHHHHHHHHHh
Confidence 12222332 224677777777777665
No 39
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=92.24 E-value=0.077 Score=54.35 Aligned_cols=11 Identities=9% Similarity=-0.055 Sum_probs=4.7
Q ss_pred HHHHHHHHhhh
Q 007146 479 ASLMEAAVQLK 489 (616)
Q Consensus 479 ~slLe~~~~lk 489 (616)
..+...+.+++
T Consensus 323 ~~l~~~l~~~~ 333 (386)
T 2ca6_A 323 DEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhhhcC
Confidence 33334444444
No 40
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=91.58 E-value=0.57 Score=45.40 Aligned_cols=64 Identities=9% Similarity=-0.071 Sum_probs=49.7
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHh
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVG 113 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~ 113 (616)
.+.+.+|..|.|.+|+++. ..+...++++|.|++ ..||..|+.+|+.+- ..+....++++.+.+
T Consensus 34 ~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~------~~vR~~A~~aL~~l~---~~~~~~~~l~~~L~~ 97 (280)
T 1oyz_A 34 DHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN------YIRRDIGAFILGQIK---ICKKCEDNVFNILNN 97 (280)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSS------HHHHHHHHHHHHHSC---CCTTTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCC------HHHHHHHHHHHHHhc---cccccchHHHHHHHH
Confidence 5788999999999999872 468889999999996 789999999998763 233345566665553
No 41
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.54 E-value=0.14 Score=47.29 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=60.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh-----
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW----- 104 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~----- 104 (616)
.+.+.+|..|+|++|.++.-.++. .-..+...+++.|.+++ ..||..|+.||+++..++. ...
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~--~~~~~~~~ 136 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGGN--EQIQAVID 136 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSC------HHHHHHHHHHHHHHTTSCH--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCc------HHHHHHHHHHHHHHHcCCH--HHHHHHHH
Confidence 567899999999999987432221 11225678999999986 8899999999999986432 111
Q ss_pred hhHHHHHHhhcccccch-hhHHHHHHHHHHHh
Q 007146 105 YPLLQVIVGRIGYEDEE-NSILFELLSSVVGA 135 (616)
Q Consensus 105 ~plLq~i~~~i~~ed~e-~~~L~~lL~tive~ 135 (616)
...++.+++.+...+.+ ....+..|..+...
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 12455666666655422 11224445555443
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.30 E-value=0.67 Score=42.92 Aligned_cols=49 Identities=29% Similarity=0.270 Sum_probs=41.2
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLL 95 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll 95 (616)
.+.+.+|..|.+.+|++.. ..+...|+++|.|++ ..||..|+.+|+.+-
T Consensus 30 ~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED------AWVRRAAADALGQIG 78 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSC------HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCC------HHHHHHHHHHHHhhC
Confidence 6788999999999999865 246778889999986 889999999998873
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.94 E-value=1.7 Score=41.96 Aligned_cols=76 Identities=16% Similarity=0.019 Sum_probs=52.8
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHH-HHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLL-KALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll-~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
.+.+.+|..|.|.+|+++. +......+...+. .++.|++ .-||..|+.||+.+-..+ |.....+++.++
T Consensus 65 d~~~~vR~~A~~aL~~l~~--~~~~~~~l~~~L~~~~~~d~~------~~vr~~a~~aL~~l~~~~--~~~~~~~~~~L~ 134 (280)
T 1oyz_A 65 DKNYIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALNDKS------ACVRATAIESTAQRCKKN--PIYSPKIVEQSQ 134 (280)
T ss_dssp CSSHHHHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHHCSC------HHHHHHHHHHHHHHHHHC--GGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHhccC--CcccHHHHHHHH
Confidence 6678999999999999874 2233344444444 3567885 779999999999986443 222345677777
Q ss_pred hhccccc
Q 007146 113 GRIGYED 119 (616)
Q Consensus 113 ~~i~~ed 119 (616)
+.+...+
T Consensus 135 ~~l~d~~ 141 (280)
T 1oyz_A 135 ITAFDKS 141 (280)
T ss_dssp HHTTCSC
T ss_pred HHhhCCC
Confidence 7776655
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=90.94 E-value=0.24 Score=45.59 Aligned_cols=137 Identities=19% Similarity=0.155 Sum_probs=78.1
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCC-CCh--hh
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMP-PEW--YP 106 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p-~~~--~p 106 (616)
+..+-+|..|+|.++.++.-.++. .-..+...+++.|.+++ ..||..|+.||+++...+..- ..+ .-
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC------HHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 667899999999999998533221 11146788999999985 789999999999998543210 000 12
Q ss_pred HHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Q 007146 107 LLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 182 (616)
Q Consensus 107 lLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~ 182 (616)
.++.+++.+...+.+ ......+|..+.....+.....+ -..+...+++++.. +-+.+.+.+..+|..+..
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI---DAGALPALVQLLSS---PNEQILQEALWALSNIAS 167 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH---HTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH---HcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHc
Confidence 455667777666522 11224455555432222211100 01112222333322 346777777777776654
No 45
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.38 E-value=0.57 Score=47.88 Aligned_cols=138 Identities=10% Similarity=0.092 Sum_probs=83.6
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccc----hHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh-----
Q 007146 34 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW----- 104 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~----~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~----- 104 (616)
.+.+-+|..|+|++|.++...++.. -..+...+++.|.+++ ..||..|+.+|+++...+. ...
T Consensus 245 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~------~~vr~~a~~~L~~l~~~~~--~~~~~~~~ 316 (450)
T 2jdq_A 245 HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK------ESIKKEACWTISNITAGNR--AQIQTVID 316 (450)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS------HHHHHHHHHHHHHHTTSCH--HHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC------HHHHHHHHHHHHHHHcCCH--HHHHHHHH
Confidence 5667999999999999987443211 1247788999999885 7899999999999986431 111
Q ss_pred hhHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccchHHHH-HHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHH
Q 007146 105 YPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIV-SSLVAAISKHMHPSSEPWPQVVERGFAALALMAQ 182 (616)
Q Consensus 105 ~plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~-~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~ 182 (616)
..+++.+++.+...+.+ ......+|..++..+..+... .++ +.+...+++++.. +-+.+.+.++.||..+.+
T Consensus 317 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~---~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIK---YLVELGCIKPLCDLLTV---MDSKIVQVALNGLENILR 390 (450)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHTCHHHHHHGGGS---SCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHH---HHHHCCCHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Confidence 13444555555544422 112355677776654322211 111 1233334444432 236788888888888776
Q ss_pred HHh
Q 007146 183 SWE 185 (616)
Q Consensus 183 ~~~ 185 (616)
.-+
T Consensus 391 ~~~ 393 (450)
T 2jdq_A 391 LGE 393 (450)
T ss_dssp HHH
T ss_pred hch
Confidence 433
No 46
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=90.26 E-value=0.3 Score=51.96 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=84.7
Q ss_pred chhHHHhhHHHHhhhhhcCCccchH-----HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChh-----
Q 007146 36 LPYLVASANWILGELASCLPEDISA-----DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY----- 105 (616)
Q Consensus 36 sp~LrA~A~w~~gela~~~~e~~~~-----~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~----- 105 (616)
.+.++..|||++|.++...+ .... .++..|++.|.+++ ..||..|+.||+++..++. |....
T Consensus 342 ~~~v~~~A~~~L~nl~~~~~-~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~ 413 (528)
T 4b8j_A 342 KKSIKKEACWTISNITAGNK-DQIQAVINAGIIGPLVNLLQTAE------FDIKKEAAWAISNATSGGS-HDQIKYLVSE 413 (528)
T ss_dssp CHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTCHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHSC-HHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHCCCH-HHHHHHHHCCCHHHHHHHHhcCC------HHHHHHHHHHHHHHHcCCC-HHHHHHHHHC
Confidence 78999999999999986432 2222 34577888888875 8899999999999998842 21222
Q ss_pred hHHHHHHhhcccccch-hhHHHHHHHHHHHhhhh-------ccccchHHHHHHH-HHHHHhccCCCCCCchHHHHHHHHH
Q 007146 106 PLLQVIVGRIGYEDEE-NSILFELLSSVVGAANE-------NVADHIPYIVSSL-VAAISKHMHPSSEPWPQVVERGFAA 176 (616)
Q Consensus 106 plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e-------~iap~~~~l~~~l-a~~~~~~~~~~~~~~pq~ve~~~~~ 176 (616)
..++.++..+...+.+ -...+..|..++..+.. ...+|...|...= ...+.++. -.+.+.+.+.++..
T Consensus 414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~---~~~~~~v~~~a~~i 490 (528)
T 4b8j_A 414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQ---SHDNNEIYEKAVKI 490 (528)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGG---GCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHH---cCCCHHHHHHHHHH
Confidence 2355677777776633 12236677778776655 3445554444321 11122222 13456677777666
Q ss_pred HHHHH
Q 007146 177 LALMA 181 (616)
Q Consensus 177 l~a~~ 181 (616)
|.-++
T Consensus 491 l~~~~ 495 (528)
T 4b8j_A 491 LEAYW 495 (528)
T ss_dssp HHHHC
T ss_pred HHHHC
Confidence 65554
No 47
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=90.00 E-value=0.099 Score=53.54 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=2.2
Q ss_pred hhccCh
Q 007146 404 CYLCYP 409 (616)
Q Consensus 404 c~~ynP 409 (616)
++-.+|
T Consensus 239 ~l~~~~ 244 (386)
T 2ca6_A 239 ALKSWP 244 (386)
T ss_dssp HGGGCT
T ss_pred HHccCC
Confidence 333333
No 48
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=89.90 E-value=0.52 Score=43.95 Aligned_cols=80 Identities=21% Similarity=0.125 Sum_probs=54.8
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCC-h--hh
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-W--YP 106 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~-~--~p 106 (616)
.+.+.+|..|+|+++.++...++. .-..+...+++.|.+++ ..||..|+.+|+++......-.. + ..
T Consensus 55 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 128 (252)
T 4hxt_A 55 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD------SEVQKEAARALANIASGPDEAIKAIVDAG 128 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSS------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCC------HHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 566899999999999998643221 11146788999999875 89999999999999864321000 0 02
Q ss_pred HHHHHHhhccccc
Q 007146 107 LLQVIVGRIGYED 119 (616)
Q Consensus 107 lLq~i~~~i~~ed 119 (616)
.++.+++.+...+
T Consensus 129 ~i~~L~~~l~~~~ 141 (252)
T 4hxt_A 129 GVEVLVKLLTSTD 141 (252)
T ss_dssp HHHHHHHHTTCSC
T ss_pred CHHHHHHHHcCCC
Confidence 4556666666555
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=89.58 E-value=1.2 Score=40.77 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=39.8
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGL 94 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sl 94 (616)
.+.|.+|..|.+.+|++.. ..+...++++|.|++ ..||..|+.+|+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~------~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDED------AWVRRAAADALGQI 72 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSS------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCC------HHHHHHHHHHHHhh
Confidence 7788999999999998764 235677888898886 78999999998876
No 50
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=89.08 E-value=3.5 Score=47.69 Aligned_cols=94 Identities=15% Similarity=0.255 Sum_probs=71.1
Q ss_pred hhHHHhhHHHHhhhhh----------cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhh
Q 007146 37 PYLVASANWILGELAS----------CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYP 106 (616)
Q Consensus 37 p~LrA~A~w~~gela~----------~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~p 106 (616)
+.+|.-|.=++..+-. -+|++....+=+.++.+|..+. -.||..++-+|+.+.+.++ |..|+.
T Consensus 51 ~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~------~~ir~~l~~~ia~ia~~d~-p~~Wp~ 123 (960)
T 1wa5_C 51 LSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLP------NNLQVQIGEAISSIADSDF-PDRWPT 123 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHHS-TTTCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHhhC-ccchhH
Confidence 4566655544443321 3577778888889999999874 7899999999999999987 579999
Q ss_pred HHHHHHhhccccc-chhhHHHHHHHHHHHhhh
Q 007146 107 LLQVIVGRIGYED-EENSILFELLSSVVGAAN 137 (616)
Q Consensus 107 lLq~i~~~i~~ed-~e~~~L~~lL~tive~~~ 137 (616)
||+.+++.+++.+ .-....+.+|..|++++.
T Consensus 124 ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876 222234778888888765
No 51
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=88.18 E-value=3.5 Score=48.65 Aligned_cols=237 Identities=9% Similarity=0.104 Sum_probs=130.0
Q ss_pred HHHhhhhh-cCCc--------cchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhc
Q 007146 45 WILGELAS-CLPE--------DISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 115 (616)
Q Consensus 45 w~~gela~-~~~e--------~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i 115 (616)
=.+|.++. |.+. ..|.++...++.+|.-.. +.-.||-.+..+++-+|. ... +...|+|+.++..+
T Consensus 674 ~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~----~~~~irea~~~~~~r~i~-~lg-~~~~p~lp~~i~~l 747 (980)
T 3ibv_A 674 MAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG----FNEDIRGAVRFTSGRIIN-VVG-PDMLPKVPQLISIL 747 (980)
T ss_dssp HHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC----CSHHHHHHHHHHHHHHTT-TTH-HHHTTTHHHHHHHH
T ss_pred HHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHH-Hcc-HhHHHHHHHHHHHH
Confidence 33577776 3321 235566666667776542 247899999999999987 332 25666666555543
Q ss_pred ccc-c-chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007146 116 GYE-D-EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVE 193 (616)
Q Consensus 116 ~~e-d-~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~ 193 (616)
-.. + .|-+..+.++..+|-+|+.++.|.+..+-.-|...+...+..++. .
T Consensus 748 l~~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~----------------------------~ 799 (980)
T 3ibv_A 748 LNSIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQ----------------------------G 799 (980)
T ss_dssp HHHCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------------------------C
Confidence 322 1 344458999999999999999998888888888777777743211 0
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccc---cHHHHHHHHHHHccccchhhhhhHHHHHHHH
Q 007146 194 LDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCID---DSSMLLRSIILSVSERNVIEELKLSELLLVW 270 (616)
Q Consensus 194 ~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~---D~s~ll~~il~~~t~~~~~~~~kis~l~~~w 270 (616)
.|+-+ -..-+-|++-++|+++-. ..+.++..+.. -...++..++.+..........|+ =..++
T Consensus 800 td~~r-----~~~~l~r~~~~fl~~i~~-------~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~--a~~~l 865 (980)
T 3ibv_A 800 TDDAV-----KQNDLRKSYISFILQLLN-------KGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKS--SIALV 865 (980)
T ss_dssp CCHHH-----HHHHHHHHHHHHHHHHHH-------TTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHH--HHHHH
T ss_pred cHHHH-----HHHHHHHHHHHHHHHHHh-------CCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHH--HHHHH
Confidence 11111 122246899999998876 34444332221 133556666666444443334442 46678
Q ss_pred HHHHhhhhhhh--hhccchhhHHHHhh--hcccCcccccchhhccCCCCCCCCCCchhHHhhHHHHHHHHHHhCch
Q 007146 271 ADLIGDWHAWE--ETEDLSVFDCIKEI--VNLHSKYELKNFIVRQMPPPPAPPVPPQSIIEGIGAFLSEAILQYPS 342 (616)
Q Consensus 271 a~~~~~w~~We--e~ed~~~~d~i~e~--v~~~~~~g~~~F~~~~~~~~~a~p~~~~s~~~~i~~fvs~ai~~~p~ 342 (616)
..++..|..=. +-|++.+++++.-. +|+...|..+ ..+ + +.++.=|+...+....+.++
T Consensus 866 ~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~-----------Daq-~-~~~~~e~~~~~k~~~~~~g~ 928 (980)
T 3ibv_A 866 SKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTR-----------DGQ-S-LVVLGELAGLQKIILEKLGD 928 (980)
T ss_dssp HHHHHC-------CCHHHHHHHHHHHHHHGGGC-----------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChh-----------hHH-H-HHHHHHHHHHHHHHHHhcCH
Confidence 88888885400 11334444422222 4444444432 122 1 23666677777777776654
No 52
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=87.75 E-value=0.14 Score=57.73 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=54.3
Q ss_pred HHHHHHHhhcccCcc-cCCcchhHHHhhHHHHhhhhhcCCccch-----HHHHHHHH-HHHhccCCCCCCcccchhhhhH
Q 007146 17 FTANLVRSRVLPLYS-VSVCLPYLVASANWILGELASCLPEDIS-----ADVYSSLL-KALQMLDKGDTSCYPVRASAAG 89 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~-~~~~sp~LrA~A~w~~gela~~~~e~~~-----~~~~~sll-~~l~dp~~~~~~~~PVRv~Aa~ 89 (616)
....+....|+|++. +.++.|-.|..|||.++.++. +..+. .++...++ .+|.|++ ..||+.|++
T Consensus 27 ~~~~~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~------~~Vr~~A~g 98 (684)
T 4gmo_A 27 ELAKLREDKILPVLKDLKSPDAKSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNN------IDSRAAGWE 98 (684)
T ss_dssp HHHHHHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSC------HHHHHHHHH
T ss_pred cccccchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCC------HHHHHHHHH
Confidence 455566678888765 357778999999999999975 33322 23444444 4588996 899999999
Q ss_pred HHHHHHhcC
Q 007146 90 AIVGLLEND 98 (616)
Q Consensus 90 Ai~sll~~~ 98 (616)
||++|-..+
T Consensus 99 aLrnL~~~~ 107 (684)
T 4gmo_A 99 ILKVLAQEE 107 (684)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhhc
Confidence 999997654
No 53
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=87.10 E-value=1 Score=48.09 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=64.6
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC-CCCC--Chhh
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND-YMPP--EWYP 106 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~-~~p~--~~~p 106 (616)
.+.+-+|..|+|++|.++...++. ....+...|++.|.+++ ..||..|+.+|.+|.++. ..+. ....
T Consensus 184 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 257 (530)
T 1wa5_B 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK------PSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257 (530)
T ss_dssp HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC------HHHHHHHHHHHHHHHCCSSSCCCHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC------HHHHHHHHHHHHHHhCCCCCCCcHHHHHh
Confidence 457799999999999998643221 11246777888888864 789999999999999875 2221 2246
Q ss_pred HHHHHHhhcccccch-hhHHHHHHHHHHHh
Q 007146 107 LLQVIVGRIGYEDEE-NSILFELLSSVVGA 135 (616)
Q Consensus 107 lLq~i~~~i~~ed~e-~~~L~~lL~tive~ 135 (616)
+++.++..+...+.+ ....+.+|..+...
T Consensus 258 ~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 258 ALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp GHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 777888888776622 11124555555543
No 54
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=86.63 E-value=1.8 Score=45.86 Aligned_cols=140 Identities=10% Similarity=0.069 Sum_probs=80.6
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccc----hHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChh----
Q 007146 34 VCLPYLVASANWILGELASCLPEDI----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY---- 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~----~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~---- 105 (616)
.+.+-++..|+|++|.++...+... -..+...|++.|.++. ...||..|+.+|+++.... +....
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~~v~~~A~~~L~nl~~~~--~~~~~~~~~ 369 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-----KKSIKKEACWTISNITAGN--KDQIQAVIN 369 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHCCC--HHHHHHHHH
Confidence 5678999999999999987443211 1235778888898872 2789999999999998642 11111
Q ss_pred -hHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 007146 106 -PLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 183 (616)
Q Consensus 106 -plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~ 183 (616)
.+++.++..+...+.+ ....+.+|..++..+..+...++. -..+...+++++.. +-+.++..++.+|.-+.+.
T Consensus 370 ~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~--~~~~i~~L~~lL~~---~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 370 AGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLV--SEGCIKPLCDLLIC---PDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH--HCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHHH
Confidence 2233444444444411 112356667776665433332221 01222333344432 3457777777777666654
Q ss_pred Hh
Q 007146 184 WE 185 (616)
Q Consensus 184 ~~ 185 (616)
-+
T Consensus 445 ~~ 446 (528)
T 4b8j_A 445 GE 446 (528)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=85.80 E-value=0.48 Score=41.36 Aligned_cols=47 Identities=13% Similarity=0.010 Sum_probs=39.8
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHH
Q 007146 34 VCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVG 93 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~s 93 (616)
.+.|.+|..|+|.+|++.. ..+...|++.|.|++ .-||..|+.||+.
T Consensus 84 d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~------~~vr~~A~~aL~~ 130 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGT------GFARKVAVNYLET 130 (131)
T ss_dssp HCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCC------THHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCC------HHHHHHHHHHHHh
Confidence 5788999999999999873 357788899999886 7899999998864
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=85.34 E-value=1.3 Score=45.09 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=46.6
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
.+.+-++.+|||+++.++...++. .-..+...|+..|..++ ..||-.|+.||++++..
T Consensus 178 ~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d------~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 178 QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH------SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCC------STHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCC------hhHHHHHHHHHHHHHhC
Confidence 467799999999999998764332 12246788899999885 89999999999999987
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=84.66 E-value=2.6 Score=50.08 Aligned_cols=214 Identities=14% Similarity=0.153 Sum_probs=138.2
Q ss_pred HhhHHHHhhhhhcC-----CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhc
Q 007146 41 ASANWILGELASCL-----PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRI 115 (616)
Q Consensus 41 A~A~w~~gela~~~-----~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i 115 (616)
.+|+-.++.++... -|..+...+..++.+..|.+ -+||-.|..|+.+++.+- -|.....+|+.+++.+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~------~~v~~aa~~~~~~~~~~~-~~~a~~~~~~~~~~~~ 142 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD------KEIQSVASETLISIVNAV-NPVAIKALLPHLTNAI 142 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS------HHHHHHHHHHHHHHHHHS-CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHh
Confidence 66777888777522 23455567789999999986 789999999999999764 4446788999999888
Q ss_pred cccc--chhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 007146 116 GYED--EENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQSWENFLREEVE 193 (616)
Q Consensus 116 ~~ed--~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~~~~~~~d~~~ 193 (616)
.... -..--.+.+|+.+++...+.++-..|.|+--+.. +||++=.+..
T Consensus 143 ~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~-------------------------~~~d~k~~v~----- 192 (986)
T 2iw3_A 143 VETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSE-------------------------TMWDTKKEVK----- 192 (986)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH-------------------------HTTCSSHHHH-----
T ss_pred ccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHh-------------------------hcccCcHHHH-----
Confidence 6553 3334458999999999999999999999988876 3433211111
Q ss_pred ccccchhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHH--HHHHHccccchhhhhhHHHHHHHHH
Q 007146 194 LDQSSGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLR--SIILSVSERNVIEELKLSELLLVWA 271 (616)
Q Consensus 194 ~~~~~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~ll~--~il~~~t~~~~~~~~kis~l~~~wa 271 (616)
.+|..+ +..+|+++.- .++++-+--.+.|+.+-+.+=+ -.++.+||.+......++=|+ |
T Consensus 193 ------~~~~~~---~~~~~~~~~n------~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~---p 254 (986)
T 2iw3_A 193 ------AAATAA---MTKATETVDN------KDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMV---P 254 (986)
T ss_dssp ------HHHHHH---HHHHGGGCCC------TTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHH---H
T ss_pred ------HHHHHH---HHHHHhcCCC------cchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHH---H
Confidence 233333 2333333322 2222221111255555555555 457788999888888866666 8
Q ss_pred HHHhhhhhhhhhccchhhHHHHhhhcccC-cccccchhh
Q 007146 272 DLIGDWHAWEETEDLSVFDCIKEIVNLHS-KYELKNFIV 309 (616)
Q Consensus 272 ~~~~~w~~Wee~ed~~~~d~i~e~v~~~~-~~g~~~F~~ 309 (616)
.+....+.=.-.=+--..=.|+||.-|=+ ......|+-
T Consensus 255 ~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~ 293 (986)
T 2iw3_A 255 LLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG 293 (986)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT
T ss_pred HHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh
Confidence 88887765332222334456778866654 466677773
No 58
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=84.04 E-value=2 Score=46.24 Aligned_cols=111 Identities=15% Similarity=0.277 Sum_probs=70.6
Q ss_pred HHHHHHHhhcccCccc--CCcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHH
Q 007146 17 FTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGA 90 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~--~~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~A 90 (616)
....++...++|.+.. ..+.+.+|..|||+++.++...++. .-..++..++..|.+++ ..||..|+.|
T Consensus 308 ~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~------~~v~~~Aa~a 381 (510)
T 3ul1_B 308 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD------FKTQKEAAWA 381 (510)
T ss_dssp HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC------HHHHHHHHHH
T ss_pred HHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC------HHHHHHHHHH
Confidence 3444444445554322 3566799999999999998643221 11246677889999885 8999999999
Q ss_pred HHHHHhcCCCCCChhhH-----HHHHHhhcccccchhhHH---HHHHHHHHHhh
Q 007146 91 IVGLLENDYMPPEWYPL-----LQVIVGRIGYEDEENSIL---FELLSSVVGAA 136 (616)
Q Consensus 91 i~sll~~~~~p~~~~pl-----Lq~i~~~i~~ed~e~~~L---~~lL~tive~~ 136 (616)
|+++...+- +.....| ++.+++.+...|.+ ++ +..|..|...+
T Consensus 382 L~Nl~~~~~-~~~~~~L~~~g~i~~L~~LL~~~d~~--i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 382 ITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAKDTK--IIQVILDAISNIFQAA 432 (510)
T ss_dssp HHHHHHHCC-HHHHHHHHHTTCHHHHHHGGGCSCHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHh
Confidence 999987653 1122222 34666777766633 33 45555566544
No 59
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.65 E-value=6.8 Score=45.04 Aligned_cols=144 Identities=9% Similarity=0.086 Sum_probs=88.9
Q ss_pred CcchhHHHhhHHHHhhhhh----cCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHH
Q 007146 34 VCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQ 109 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~----~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq 109 (616)
+.++.+|.-|.=++-..-. -+|++....+-+.||+.|.....+ ...||...+.+|+.++..++. .|+.+++
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~---~~~vr~kl~~~la~i~~~~~p--~Wp~~l~ 125 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG---PKIVLNRLCISLGAYIVHMLG--EWPGAIE 125 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHTTC--C------
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHccc--cccHHHH
Confidence 4567888777666655432 458888888889999998873211 168999999999999999875 8999999
Q ss_pred HHHhhcccc------c-chhhHHHHHHHHHHH-hh-----------hhccccchHHHHHHHHHHHHhccCCCCC--CchH
Q 007146 110 VIVGRIGYE------D-EENSILFELLSSVVG-AA-----------NENVADHIPYIVSSLVAAISKHMHPSSE--PWPQ 168 (616)
Q Consensus 110 ~i~~~i~~e------d-~e~~~L~~lL~tive-~~-----------~e~iap~~~~l~~~la~~~~~~~~~~~~--~~pq 168 (616)
.+++.+... + +-....+..|.++.| .+ .+.+..+++.+.+-+...+-+. +.+.. .-..
T Consensus 126 ~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~-~~~~~~~~~~~ 204 (971)
T 2x1g_F 126 EVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQ-MNRVWDAEAYS 204 (971)
T ss_dssp HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHH-TTSCCCHHHHH
T ss_pred HHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCccchh
Confidence 999887663 1 223356888888885 33 2334556666665554433222 11100 0115
Q ss_pred HHHHHHHHHHHHHHH
Q 007146 169 VVERGFAALALMAQS 183 (616)
Q Consensus 169 ~ve~~~~~l~a~~~~ 183 (616)
+...++.++.++.++
T Consensus 205 ~~~~al~~l~~~~~~ 219 (971)
T 2x1g_F 205 NMNRAVKCVGTWIKN 219 (971)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 667777777766664
No 60
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=83.65 E-value=0.73 Score=43.48 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=55.2
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh-----
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW----- 104 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~----- 104 (616)
.+.+.+|..|+|++|.++...+.. ....+...+++.|.+++ ..||..|+.+|++|...+. ...
T Consensus 107 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~--~~~~~~~~ 178 (252)
T 4db8_A 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN------EQILQEALWALSNIASGGN--EQIQAVID 178 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC------HHHHHHHHHHHHHHTTSCH--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC------HHHHHHHHHHHHHHHcCCh--HHHHHHHH
Confidence 567899999999999997643221 11237788999998885 7899999999999987542 111
Q ss_pred hhHHHHHHhhccccc
Q 007146 105 YPLLQVIVGRIGYED 119 (616)
Q Consensus 105 ~plLq~i~~~i~~ed 119 (616)
...++.+++.+...+
T Consensus 179 ~~~i~~L~~ll~~~~ 193 (252)
T 4db8_A 179 AGALPALVQLLSSPN 193 (252)
T ss_dssp TTCHHHHHHGGGCSS
T ss_pred CCCHHHHHHHHCCCC
Confidence 123556666666554
No 61
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=81.87 E-value=2 Score=46.16 Aligned_cols=113 Identities=14% Similarity=0.264 Sum_probs=70.8
Q ss_pred HHHHHHHhhcccCccc--CCcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHH
Q 007146 17 FTANLVRSRVLPLYSV--SVCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGA 90 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~--~~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~A 90 (616)
....++...++|.+.. ..+.+.+|..|||+++.++...+.. .-..++..++..|..++ ..||-.|+.|
T Consensus 327 ~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~------~~v~~~A~~a 400 (529)
T 3tpo_A 327 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD------FKTQKAAAWA 400 (529)
T ss_dssp HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC------HHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC------HHHHHHHHHH
Confidence 3334444444443221 3677799999999999998644321 11236677888898885 8999999999
Q ss_pred HHHHHhcCCCCCChhhH-----HHHHHhhcccccch-hhHHHHHHHHHHHhh
Q 007146 91 IVGLLENDYMPPEWYPL-----LQVIVGRIGYEDEE-NSILFELLSSVVGAA 136 (616)
Q Consensus 91 i~sll~~~~~p~~~~pl-----Lq~i~~~i~~ed~e-~~~L~~lL~tive~~ 136 (616)
|++|...+- +.....| ++.+++.+...|.+ -...+..|..|...+
T Consensus 401 L~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 401 ITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 999987643 2122222 44677777777633 112245566666544
No 62
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=81.73 E-value=4.4 Score=43.57 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=55.8
Q ss_pred HHHHHHHhhcccCccc---CCcchhHHHhhHHHHhhhhhcCCccch----HHHHHHHHHHHhccCCCCCCcccchhhhhH
Q 007146 17 FTANLVRSRVLPLYSV---SVCLPYLVASANWILGELASCLPEDIS----ADVYSSLLKALQMLDKGDTSCYPVRASAAG 89 (616)
Q Consensus 17 ~~~~l~~~~V~P~~~~---~~~sp~LrA~A~w~~gela~~~~e~~~----~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~ 89 (616)
-...++..-++|.+-- ....|-++..|+|+++.++...++... ..+...|++.|..++ .-||-.|+.
T Consensus 111 ~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~------~~v~e~A~~ 184 (529)
T 3tpo_A 111 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH------AHISEQAVW 184 (529)
T ss_dssp CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC------HHHHHHHHH
Confidence 4566677777774421 345678999999999999976554321 125567888999886 889999999
Q ss_pred HHHHHHhcC
Q 007146 90 AIVGLLEND 98 (616)
Q Consensus 90 Ai~sll~~~ 98 (616)
||+++..++
T Consensus 185 aL~nLa~~~ 193 (529)
T 3tpo_A 185 ALGNIAGAG 193 (529)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhccC
Confidence 999998654
No 63
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=80.89 E-value=2.4 Score=39.32 Aligned_cols=80 Identities=21% Similarity=0.101 Sum_probs=54.5
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCC-h--hh
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE-W--YP 106 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~-~--~p 106 (616)
.+.+-+|..|+|.++.++...++. ....+...+++.|.+++ ..||..|+.+|+.+..++..-.. + ..
T Consensus 13 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 86 (252)
T 4hxt_A 13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD------SEVQKEAARALANIASGPDEAIKAIVDAG 86 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC------HHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 445889999999999998754421 11136788999999885 88999999999999876321000 0 02
Q ss_pred HHHHHHhhccccc
Q 007146 107 LLQVIVGRIGYED 119 (616)
Q Consensus 107 lLq~i~~~i~~ed 119 (616)
.++.+++.+...+
T Consensus 87 ~i~~l~~ll~~~~ 99 (252)
T 4hxt_A 87 GVEVLVKLLTSTD 99 (252)
T ss_dssp HHHHHHHHTTCSS
T ss_pred CHHHHHHHHcCCC
Confidence 3556666666554
No 64
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=76.96 E-value=9.8 Score=40.74 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=54.4
Q ss_pred HHHHHHhhcccCcc--c-CCcchhHHHhhHHHHhhhhhcCCccch----HHHHHHHHHHHhccCCCCCCcccchhhhhHH
Q 007146 18 TANLVRSRVLPLYS--V-SVCLPYLVASANWILGELASCLPEDIS----ADVYSSLLKALQMLDKGDTSCYPVRASAAGA 90 (616)
Q Consensus 18 ~~~l~~~~V~P~~~--~-~~~sp~LrA~A~w~~gela~~~~e~~~----~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~A 90 (616)
...++..-++|.+- + ....|-++..|+|+++.+|...++... ..+...|++.|..|+ .-||-.|+.|
T Consensus 93 i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~------~~v~e~A~~a 166 (510)
T 3ul1_B 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH------AHISEQAVWA 166 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC------HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCC------HHHHHHHHHH
Confidence 45566655666432 1 345678999999999999976554321 124667899999986 8899999999
Q ss_pred HHHHHhcC
Q 007146 91 IVGLLEND 98 (616)
Q Consensus 91 i~sll~~~ 98 (616)
|+++..++
T Consensus 167 L~nLa~d~ 174 (510)
T 3ul1_B 167 LGNIAGDG 174 (510)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99998654
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=73.65 E-value=1.4 Score=49.22 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=46.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchH--HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 34 VCLPYLVASANWILGELASCLPEDISA--DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~--~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
.++||+|-+|+-.+..+...-|+ ... .....+.++|.|+| .-|+..|..+|..+..++
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~-~~~~~~~~~~l~~lL~d~d------~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQH------LGVVTAATSLITTLAQKN 218 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGG-GCCCCSCHHHHHHHTTCSC------HHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhChh-hcCchhHHHHHHHHhCCCC------ccHHHHHHHHHHHHHHhC
Confidence 78999999999999999984332 223 46677777888986 789999999999987765
No 66
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=65.40 E-value=14 Score=43.78 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=76.8
Q ss_pred hcccCcccCCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc--CCCCC
Q 007146 25 RVLPLYSVSVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN--DYMPP 102 (616)
Q Consensus 25 ~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~--~~~p~ 102 (616)
|++-.+. ....|++|..|+|.+|.+..=.+ ..++...|-..+.|++ -=||-.|+.||+-..-- +-.+|
T Consensus 615 rlv~~L~-~~~d~~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d------~~Vrq~Ai~ALG~Ig~gtnna~~~ 684 (963)
T 4ady_A 615 RIVQLLS-KSHNAHVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPV------DFVRQAAMIALSMILIQQTEKLNP 684 (963)
T ss_dssp HHTTTGG-GCSCHHHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHSTTCCTTTCT
T ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCC------HHHHHHHHHHHHHHhcCCccccch
Confidence 4454444 46678999999999998764334 3568888888888996 88999999999977643 33566
Q ss_pred ChhhHHHHHHhhccc--ccchhhHHHHHHHHHHHhhhhccc
Q 007146 103 EWYPLLQVIVGRIGY--EDEENSILFELLSSVVGAANENVA 141 (616)
Q Consensus 103 ~~~plLq~i~~~i~~--ed~e~~~L~~lL~tive~~~e~ia 141 (616)
....++..+.+-+.+ +|..+...+.+=--++..|+-.+.
T Consensus 685 rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~t 725 (963)
T 4ady_A 685 QVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVT 725 (963)
T ss_dssp THHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEE
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceE
Confidence 899999988888875 343333335555557777777743
No 67
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=60.79 E-value=1.6 Score=47.26 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=7.1
Q ss_pred hccchhhHHHHhh
Q 007146 283 TEDLSVFDCIKEI 295 (616)
Q Consensus 283 ~ed~~~~d~i~e~ 295 (616)
..|+.++.|+.+|
T Consensus 205 e~De~iLk~L~DI 217 (417)
T 2ayu_A 205 DRDAEVLEYLQDI 217 (417)
T ss_dssp HHHHTGGGGEEEE
T ss_pred hhhHHHHhhccce
Confidence 3455555555555
No 68
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=60.29 E-value=1.8 Score=45.27 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=12.9
Q ss_pred HHHHHHHccccchhhhhhHHHHHHHHHHH
Q 007146 245 LRSIILSVSERNVIEELKLSELLLVWADL 273 (616)
Q Consensus 245 l~~il~~~t~~~~~~~~kis~l~~~wa~~ 273 (616)
|+..++.++.+... .-+|..+++++|.+
T Consensus 46 ~e~~l~~L~d~Gfs-~~~i~~il~~~P~i 73 (335)
T 4fp9_B 46 LERVMSSLLDMGFS-NAHINELLSVRRGA 73 (335)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHCCCC-HHHHHHHHHhCccc
Confidence 34444444444444 33444555554443
No 69
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=57.62 E-value=73 Score=33.51 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=43.3
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHH-----HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCLPEDISAD-----VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~-----~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
++.+-++..|+|.++.++. -++.+... +...+++.|..++ .-||..|+.||++|...
T Consensus 13 s~~~~~q~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~s~~------~~~~~~A~~aL~nLa~~ 74 (457)
T 1xm9_A 13 SQDEKYQAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPN------QNVQQAAAGALRNLVFR 74 (457)
T ss_dssp SSCTHHHHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSSC------HHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCHHHHHHHHcCCC------HHHHHHHHHHHHHHhcC
Confidence 4567899999999999874 33333323 4567888998775 78999999999999864
No 70
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=57.09 E-value=2.8 Score=43.82 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.4
Q ss_pred HHHhCchh
Q 007146 336 AILQYPSA 343 (616)
Q Consensus 336 ai~~~p~a 343 (616)
++.++|..
T Consensus 133 ll~~~P~l 140 (335)
T 4fp9_B 133 VLYCCPEI 140 (335)
T ss_dssp HHHHCGGG
T ss_pred HHHhCchh
Confidence 33344444
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=56.70 E-value=13 Score=38.77 Aligned_cols=58 Identities=24% Similarity=0.259 Sum_probs=47.9
Q ss_pred CcchhHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
.+++.++.+|+|+++.++... +......+...+++.|.+++ ..||..|+.+|+.|-.+
T Consensus 238 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~------~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 238 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 296 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCC------HHHHHHHHHHHHHHhcC
Confidence 457889999999999999743 44456788999999998875 78999999999999664
No 72
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=55.62 E-value=48 Score=34.74 Aligned_cols=73 Identities=11% Similarity=-0.110 Sum_probs=54.5
Q ss_pred CCcchhHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 33 SVCLPYLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 33 ~~~sp~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
..+.||+|+.|-=.+| ++.++++...+.+.+-++|.|++ .-||-.|+.+...|++.. |.-...++..+-
T Consensus 114 ~~~N~~iR~lALRtL~---~I~~~~m~~~l~~~lk~~L~d~~------pyVRk~A~l~~~kL~~~~--pe~v~~~~~~l~ 182 (355)
T 3tjz_B 114 TGKEDSYRGPAVRALC---QITDSTMLQAIERYMKQAIVDKV------PSVSSSALVSSLHLLKCS--FDVVKRWVNEAQ 182 (355)
T ss_dssp HSSCHHHHHHHHHHHH---HHCCTTTHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHTTTC--HHHHHTTHHHHH
T ss_pred CCCcHhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHHhccC--HHHHHHHHHHHH
Confidence 3677899999976654 45788999999999999999997 889999999988887554 433334444444
Q ss_pred hhcc
Q 007146 113 GRIG 116 (616)
Q Consensus 113 ~~i~ 116 (616)
..+.
T Consensus 183 ~ll~ 186 (355)
T 3tjz_B 183 EAAS 186 (355)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 4443
No 73
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=52.33 E-value=2.9 Score=45.15 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=4.6
Q ss_pred HHHHHHHhCc
Q 007146 332 FLSEAILQYP 341 (616)
Q Consensus 332 fvs~ai~~~p 341 (616)
|=-+|+.+.|
T Consensus 188 FWltalkN~~ 197 (417)
T 2ayu_A 188 FWLTALENLP 197 (417)
T ss_dssp HHHHHHHTST
T ss_pred HHHHHHHcCh
Confidence 4444554443
No 74
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=46.60 E-value=60 Score=36.99 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=10.9
Q ss_pred hHHhhHHHHHHHHHHhCc
Q 007146 324 SIIEGIGAFLSEAILQYP 341 (616)
Q Consensus 324 s~~~~i~~fvs~ai~~~p 341 (616)
.+++.+..|+.......|
T Consensus 153 ~~v~~Y~~FL~~LvSa~~ 170 (649)
T 3tj1_A 153 HTLSKYIYFIKILCSSIP 170 (649)
T ss_dssp HHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHhccH
Confidence 456666666666665555
No 75
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=46.60 E-value=26 Score=41.66 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=60.4
Q ss_pred cchHHHHHHhhChHHHHHHHHhhcccCcccCCcchhHHHhhHHHHhhhhh-cCC----------ccchHHHHHHHHHHHh
Q 007146 3 YGGLQEFLREQKSEFTANLVRSRVLPLYSVSVCLPYLVASANWILGELAS-CLP----------EDISADVYSSLLKALQ 71 (616)
Q Consensus 3 ~G~L~~~L~~~~~~~~~~l~~~~V~P~~~~~~~sp~LrA~A~w~~gela~-~~~----------e~~~~~~~~sll~~l~ 71 (616)
.|-.++|++.|+ +++.+++.- +|.-.. .+.|-+...|||.+-.++. |-. +..+..+++.+.++..
T Consensus 524 lGry~~wl~~~~-~~L~~vl~~-L~~~l~--~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~ 599 (1023)
T 4hat_C 524 VGQYPRFLKAHW-NFLRTVILK-LFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA 599 (1023)
T ss_dssp HHTCHHHHHHCH-HHHHHHHHH-HHHHTT--CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT
T ss_pred HHHHHHHHhccH-HHHHHHHHH-HHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH
Confidence 577788887754 466655542 444222 4567899999999999987 542 2356777777777776
Q ss_pred ccCCCCCCcccchhhhhHHHHHHHhcCC
Q 007146 72 MLDKGDTSCYPVRASAAGAIVGLLENDY 99 (616)
Q Consensus 72 dp~~~~~~~~PVRv~Aa~Ai~sll~~~~ 99 (616)
+-+ .--+..+-.||+.+|++--
T Consensus 600 ~l~------~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 600 DLQ------PQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp TSC------HHHHHHHHHHHHHHHTTCC
T ss_pred hCC------HHHHHHHHHHHHHHHHhCC
Confidence 432 4556788899999999864
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=45.18 E-value=29 Score=36.64 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=45.4
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc---c----h--HHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 34 VCLPYLVASANWILGELASCLPED---I----S--ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~---~----~--~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
+..|.++..|+|.++.++...++. + + ..++..|++.|.+++ ..||..|+.||++|-.+
T Consensus 295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~------~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN------SDVVRSGASLLSNMSRH 361 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSC------HHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCC------HhHHHHHHHHHHHHhcC
Confidence 345789999999999988655331 1 1 246678999999986 88999999999999764
No 77
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=44.22 E-value=38 Score=39.45 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=79.6
Q ss_pred CcchhHHHhhHHHHhhhhhcCCc-cch---HHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCC-------CCC
Q 007146 34 VCLPYLVASANWILGELASCLPE-DIS---ADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDY-------MPP 102 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e-~~~---~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~-------~p~ 102 (616)
..++.++..|+|+++.++...+. ..+ ..+...|++.|..++ ..||..|++||+++-..+. .-.
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d------~~vq~~Aa~ALanLt~~s~~~~~~ii~~~ 707 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED------EETATACAGALAIITSVSVKCCEKILAIA 707 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS------HHHHHHHHHHHHHHHHHCHHHHHHHHTST
T ss_pred CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC------HHHHHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 56788999999999998862211 000 135667777777664 8999999999999987321 212
Q ss_pred ChhhHHHHHHhhcccccch-hhHHHHHHHHHHHhhhhccccchHHHHHH-HHHHHHhccCCCCCCchHHHHHHHHHHHHH
Q 007146 103 EWYPLLQVIVGRIGYEDEE-NSILFELLSSVVGAANENVADHIPYIVSS-LVAAISKHMHPSSEPWPQVVERGFAALALM 180 (616)
Q Consensus 103 ~~~plLq~i~~~i~~ed~e-~~~L~~lL~tive~~~e~iap~~~~l~~~-la~~~~~~~~~~~~~~pq~ve~~~~~l~a~ 180 (616)
.|.|.|-.++ ..++.+ ...-+..|.-++...+ + ++-.|++. .-..+.+++...-..-+++++.++.||..+
T Consensus 708 g~I~~Lv~LL---~s~d~~vq~~A~~aL~NL~~~s~-e---~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 708 SWLDILHTLI---ANPSPAVQHRGIVIILNMINAGE-E---IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp THHHHHHHHH---TCSSHHHHHHHHHHHHHHHTTCH-H---HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---CCCCHHHHHHHHHHHHHHHhCCH-H---HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 4544444444 444422 1112444444444222 2 22333322 111233333332235689999999999888
Q ss_pred HHHHhhhhh
Q 007146 181 AQSWENFLR 189 (616)
Q Consensus 181 ~~~~~~~~~ 189 (616)
-+ |...++
T Consensus 781 l~-~g~~~~ 788 (810)
T 3now_A 781 ER-YRIIER 788 (810)
T ss_dssp HH-HHTC--
T ss_pred Hh-CCCccC
Confidence 75 444444
No 78
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=44.09 E-value=28 Score=38.15 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=51.3
Q ss_pred hcccCcccCCcchhHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 25 RVLPLYSVSVCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 25 ~V~P~~~~~~~sp~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
.++.... .+++.++.+|+|+++.++... +......+...|++.|.+++ .-||..|+.+|++|-.+
T Consensus 228 ~L~~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d------~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 228 ALGLHLT--DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHTTTT--CSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHcC
Confidence 3444444 456789999999999999743 44556789999999999875 77999999999999765
No 79
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=43.28 E-value=32 Score=35.57 Aligned_cols=56 Identities=16% Similarity=0.012 Sum_probs=41.7
Q ss_pred cchhHHHhhHHHHhhhhhcCCccchH------HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhc
Q 007146 35 CLPYLVASANWILGELASCLPEDISA------DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEN 97 (616)
Q Consensus 35 ~sp~LrA~A~w~~gela~~~~e~~~~------~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~ 97 (616)
.++-++-+|+|++..++.- ++.+.. .+...|++.|..++ .-||..|++||++|-..
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~-~~~~k~~i~~~~GaIp~LV~LL~s~~------~~v~~~A~~aL~nLs~~ 157 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFG-DVANKATLCSMKGCMRALVAQLKSES------EDLQQVIASVLRNLSWR 157 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSS-CHHHHHHHHHCHHHHHHHHHGGGCSC------HHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCcHHHHHHHHCCCC------HHHHHHHHHHHHHHhcc
Confidence 4567999999999888743 222332 23667888888764 78999999999999764
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=42.25 E-value=44 Score=39.82 Aligned_cols=109 Identities=10% Similarity=0.154 Sum_probs=75.1
Q ss_pred hHHHhhHHHHhhhhhcCCccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCC----hhhHHHHHHh
Q 007146 38 YLVASANWILGELASCLPEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPE----WYPLLQVIVG 113 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~----~~plLq~i~~ 113 (616)
-+|..|.-.+--+..+.|+.-...++..|+.+|.... ..+.++.|-..|..|++.. |.. ++.++|++..
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~ 182 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETN-----KWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSE 182 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHh
Confidence 4566666666666677776666899999999996553 4789999999999999865 322 2233334444
Q ss_pred hcccccch-hhHHHHHHHHHHH-hhhhccccchHHHHHHHHH
Q 007146 114 RIGYEDEE-NSILFELLSSVVG-AANENVADHIPYIVSSLVA 153 (616)
Q Consensus 114 ~i~~ed~e-~~~L~~lL~tive-~~~e~iap~~~~l~~~la~ 153 (616)
.+-....| +..-..+|+.+.. ..+.+|.||+|.|+..|++
T Consensus 183 ~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~ 224 (986)
T 2iw3_A 183 TMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC
T ss_pred hcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC
Confidence 43333323 1223567777776 5788999999999999996
No 81
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=41.16 E-value=46 Score=36.38 Aligned_cols=81 Identities=14% Similarity=0.056 Sum_probs=55.2
Q ss_pred CcchhHHHhhHHHHhhhhhcCCcc----chHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCCh--hhH
Q 007146 34 VCLPYLVASANWILGELASCLPED----ISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEW--YPL 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~----~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~--~pl 107 (616)
...+.+|.+|+.+++.++...+.. ....+...+++.|...+ +.-||..|+.+|++|-.+..--..+ ...
T Consensus 25 ~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~-----~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~ 99 (644)
T 2z6h_A 25 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-----DVETARCTAGTLHNLSHHREGLLAIFKSGG 99 (644)
T ss_dssp CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC-----CHHHHHHHHHHHHHHTTSHHHHHHHHTTTH
T ss_pred CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC-----CHHHHHHHHHHHHHHhcChhhHHHHHHcCC
Confidence 567899999999999999744321 12367888999998642 4779999999999887653200000 124
Q ss_pred HHHHHhhccccc
Q 007146 108 LQVIVGRIGYED 119 (616)
Q Consensus 108 Lq~i~~~i~~ed 119 (616)
++.+++.+...+
T Consensus 100 i~~Lv~lL~~~~ 111 (644)
T 2z6h_A 100 IPALVKMLGSPV 111 (644)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHHHHhCCC
Confidence 566777777665
No 82
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=39.80 E-value=60 Score=33.58 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=53.1
Q ss_pred hHHHhhHHHHhhhhhcCCccchH-----HHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 38 YLVASANWILGELASCLPEDISA-----DVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~~e~~~~-----~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
.++..|+.++..++.+ +.+.. .+...+++.|.+++ ..||-.|+.+|++|-++..........++.++
T Consensus 201 ~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll~~~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~ 272 (529)
T 1jdh_A 201 KLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPS------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 272 (529)
T ss_dssp HHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTTTSSC------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHHhCCC------hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHH
Confidence 4555667777666653 22222 35667777777764 78999999999999988766656678888888
Q ss_pred hhccccc
Q 007146 113 GRIGYED 119 (616)
Q Consensus 113 ~~i~~ed 119 (616)
+.+..++
T Consensus 273 ~ll~~~~ 279 (529)
T 1jdh_A 273 QLLGSDD 279 (529)
T ss_dssp HHTTCSC
T ss_pred HHHcCCC
Confidence 8887766
No 83
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=39.75 E-value=30 Score=39.36 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=48.4
Q ss_pred CcchhHHHhhHHHHhhhhhcC-CccchHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcC
Q 007146 34 VCLPYLVASANWILGELASCL-PEDISADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLEND 98 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~-~e~~~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~ 98 (616)
...+-++.+|+|+++.++... +......+...|++.|.+++ .-||..|+.||++|..+.
T Consensus 371 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d------~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 371 DPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCNN 430 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSC------HHHHHHHHHHHHHHTSSC
T ss_pred CCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhCC
Confidence 456688999999999999733 44456789999999998875 789999999999997653
No 84
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=36.64 E-value=59 Score=36.96 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=53.6
Q ss_pred hHHHhhHHHHhhhhhcCCccchHHH-----HHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHH
Q 007146 38 YLVASANWILGELASCLPEDISADV-----YSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIV 112 (616)
Q Consensus 38 ~LrA~A~w~~gela~~~~e~~~~~~-----~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~ 112 (616)
-++..|+.++..++.|. .++..+ ...|+..|.+++ ..+|..|+.+|+.|.++.........+++.++
T Consensus 334 ~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~------~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv 405 (780)
T 2z6g_A 334 KLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPS------QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 405 (780)
T ss_dssp HHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSC------HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCc------hHHHHHHHHHHHHHhccchhhhhhhhHHHHHH
Confidence 44556677777777543 333333 466777777664 67999999999999988866656678899999
Q ss_pred hhccccc
Q 007146 113 GRIGYED 119 (616)
Q Consensus 113 ~~i~~ed 119 (616)
+.+...+
T Consensus 406 ~lL~~~d 412 (780)
T 2z6g_A 406 QLLGSDD 412 (780)
T ss_dssp HHTTCSC
T ss_pred HHHcCCC
Confidence 9888766
No 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=34.29 E-value=97 Score=34.61 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=54.0
Q ss_pred CcchhHHHhhHHHHhhhhhcCCc---cc-----hHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChh
Q 007146 34 VCLPYLVASANWILGELASCLPE---DI-----SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWY 105 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e---~~-----~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~ 105 (616)
+..+.++.+|+|+++.|+.+... .+ ....+..|++.|..++ -+|+..|++||++|-.+.. +..
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~------~~v~~~A~~aL~nLs~~~~---~~~ 390 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH------ERVVKAASGALRNLAVDAR---NKE 390 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC------HHHHHHHHHHHHHHHTTCS---CHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC------HHHHHHHHHHHHHHhCChh---HHH
Confidence 34678889999999999765421 11 1466888999998886 7999999999999987543 332
Q ss_pred h----HHHHHHhhcccc
Q 007146 106 P----LLQVIVGRIGYE 118 (616)
Q Consensus 106 p----lLq~i~~~i~~e 118 (616)
. .++.++......
T Consensus 391 ~I~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 391 LIGKHAIPNLVKNLPGG 407 (584)
T ss_dssp HHHHHHHHHHHHTSSSS
T ss_pred HHHhCCHHHHHHHhcCC
Confidence 2 244666666554
No 86
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=30.67 E-value=44 Score=38.11 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhHHHHHHhhccccc---chhhHHHHHHHHHHHh
Q 007146 59 SADVYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPLLQVIVGRIGYED---EENSILFELLSSVVGA 135 (616)
Q Consensus 59 ~~~~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plLq~i~~~i~~ed---~e~~~L~~lL~tive~ 135 (616)
+-.++..++.+|.|+| ==||+.||.+|.+.. .|.....|+..+-..+.+-| .-......||+.+..-
T Consensus 297 Ld~Vv~aVL~GL~D~D------DDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 297 KDGLCRKLVSLLSSPD------EDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp HHHHHHHHHHHTTCSS------HHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcc------cHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcC
Confidence 7889999999999996 469999999999999 78888899998888877754 2223347788877664
Q ss_pred hhhc----------cccchHHHHHHHHHHHHhccCCC
Q 007146 136 ANEN----------VADHIPYIVSSLVAAISKHMHPS 162 (616)
Q Consensus 136 ~~e~----------iap~~~~l~~~la~~~~~~~~~~ 162 (616)
-. . +-||.-+-++++-.+++|-+..-
T Consensus 367 p~-~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 367 NP-ELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp CT-TCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred Cc-ccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 43 3 45555454555555455544333
No 87
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=28.78 E-value=79 Score=37.99 Aligned_cols=100 Identities=8% Similarity=0.099 Sum_probs=69.4
Q ss_pred CcchhHHHhhHHHHhhhhh----cCCccchHHHHHHHHHHHhccCCCC-CCcccchhhhhHHHHHHHhcCCCCCChhhHH
Q 007146 34 VCLPYLVASANWILGELAS----CLPEDISADVYSSLLKALQMLDKGD-TSCYPVRASAAGAIVGLLENDYMPPEWYPLL 108 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~----~~~e~~~~~~~~sll~~l~dp~~~~-~~~~PVRv~Aa~Ai~sll~~~~~p~~~~plL 108 (616)
...+++|.-|.-++-..-. -+|++....+-+.+++.|....... -....||-..+-+|+.++..+ +|..|+.++
T Consensus 58 s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d-~p~~Wp~ll 136 (1204)
T 3a6p_A 58 TQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE-WPQHWPDML 136 (1204)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH-STTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh-CcccchHHH
Confidence 4567888777666655442 4688888888899999987542111 013679999999999999996 467999999
Q ss_pred HHHHhhcccccchhhHHHHHHHHHHH
Q 007146 109 QVIVGRIGYEDEENSILFELLSSVVG 134 (616)
Q Consensus 109 q~i~~~i~~ed~e~~~L~~lL~tive 134 (616)
+.+++.++....-....+.+|..+.|
T Consensus 137 ~~L~~~~~~~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 137 IELDTLSKQGETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99998876533212234556666654
No 88
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=27.79 E-value=71 Score=29.75 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=15.8
Q ss_pred chhhHHHHHhhhhccChh
Q 007146 393 LWKPVVLAISSCYLCYPA 410 (616)
Q Consensus 393 l~KpLIlvIs~c~~ynP~ 410 (616)
+...+-+++.||+.||+.
T Consensus 84 f~~Dv~Lif~Na~~yN~~ 101 (166)
T 3fkm_X 84 FVKDVQLIFDNCSLYNTS 101 (166)
T ss_dssp HHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 777899999999999875
No 89
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=26.73 E-value=2.3e+02 Score=29.37 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=50.7
Q ss_pred hhhHHHHHHhhccc--ccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHH
Q 007146 104 WYPLLQVIVGRIGY--EDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVV 170 (616)
Q Consensus 104 ~~plLq~i~~~i~~--ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~v 170 (616)
++|||.+++.--.+ .+.=.+-.+.+++|||.+.++.+.|++|.|-.++=...+..+.-+-+..|.-=
T Consensus 71 ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR 139 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHR 139 (321)
T ss_dssp HHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHH
Confidence 46777766654211 11001228999999999999999999999999999988888888878777644
No 90
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A
Probab=25.48 E-value=21 Score=36.11 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=6.1
Q ss_pred hccchhhHHHHhh
Q 007146 283 TEDLSVFDCIKEI 295 (616)
Q Consensus 283 ~ed~~~~d~i~e~ 295 (616)
..|+.++.|+.+|
T Consensus 74 e~De~iL~~L~dI 86 (264)
T 2zd7_A 74 ASDFKYIDTIDKI 86 (264)
T ss_dssp GGGHHHHTTEEEE
T ss_pred HhhHHHHHhcCce
Confidence 3444444555444
No 91
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=23.61 E-value=1.5e+02 Score=33.17 Aligned_cols=140 Identities=16% Similarity=0.129 Sum_probs=76.1
Q ss_pred CcchhHHHhhHHHHhhhhhcCCccchHH-----HHHHHHHHHhccCCCCCCcccchhhhhHHHHHHHhcCCCCCChhhH-
Q 007146 34 VCLPYLVASANWILGELASCLPEDISAD-----VYSSLLKALQMLDKGDTSCYPVRASAAGAIVGLLENDYMPPEWYPL- 107 (616)
Q Consensus 34 ~~sp~LrA~A~w~~gela~~~~e~~~~~-----~~~sll~~l~dp~~~~~~~~PVRv~Aa~Ai~sll~~~~~p~~~~pl- 107 (616)
+..+-++..|+|.+..++. -++.+... +...|++.|..++ .-||..|++||++|.-.+- +.+-..+
T Consensus 59 s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~------~~vq~~Aa~AL~nLa~~~~-~~nk~~I~ 130 (584)
T 3l6x_A 59 FRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPK------KEVHLGACGALKNISFGRD-QDNKIAIK 130 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSS------HHHHHHHHHHHHHHTSSSC-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCC------HHHHHHHHHHHHHHHccCC-HHHHHHHH
Confidence 4567888999999877763 23334333 3456888888885 8899999999999975321 1111111
Q ss_pred ----HHHHHhhcccc-c----chhhHHHHHHHHHHHhhhhcccc-chHHHHHHHHHHHHhccCC-------CCCCchHHH
Q 007146 108 ----LQVIVGRIGYE-D----EENSILFELLSSVVGAANENVAD-HIPYIVSSLVAAISKHMHP-------SSEPWPQVV 170 (616)
Q Consensus 108 ----Lq~i~~~i~~e-d----~e~~~L~~lL~tive~~~e~iap-~~~~l~~~la~~~~~~~~~-------~~~~~pq~v 170 (616)
++.++..+... + ..++-.+..|+. .+..+..|.. -+|.|++.|....+-+... .--+|+.|.
T Consensus 131 ~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~ 209 (584)
T 3l6x_A 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209 (584)
T ss_dssp HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHH
T ss_pred HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHH
Confidence 22333333321 1 111212333332 2333333332 2466766654333222211 123477888
Q ss_pred HHHHHHHHHHHH
Q 007146 171 ERGFAALALMAQ 182 (616)
Q Consensus 171 e~~~~~l~a~~~ 182 (616)
+.+-.+|.-++.
T Consensus 210 ~nAa~~L~NLs~ 221 (584)
T 3l6x_A 210 TNTAGCLRNVSS 221 (584)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhc
Confidence 887777776654
No 92
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=22.29 E-value=66 Score=38.27 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=74.5
Q ss_pred CccchHHHHHHHHHHHhccCCCCCCc-ccchhhhhHHHHHHHhcC-CCCCChhhHHHHHHhhccc-----------ccch
Q 007146 55 PEDISADVYSSLLKALQMLDKGDTSC-YPVRASAAGAIVGLLEND-YMPPEWYPLLQVIVGRIGY-----------EDEE 121 (616)
Q Consensus 55 ~e~~~~~~~~sll~~l~dp~~~~~~~-~PVRv~Aa~Ai~sll~~~-~~p~~~~plLq~i~~~i~~-----------ed~e 121 (616)
...-...+++.++++|.|+ . +=||-.||.+|+.||+.. ... ....++...-+.... ..+.
T Consensus 837 ~~~~~~~i~~~v~~~L~D~------q~~EVRe~Aa~tLsgll~c~~~~~-~~~~li~~f~~~~~~~~~~~~~~~~~~~~~ 909 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNE------QFVEVRVRAASILSDIVHNWKEEQ-PLLSLIERFAKGLDVNKYTSKERQKLSKTD 909 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCS------SCHHHHHHHHHHHHHHHHSCCSHH-HHHHHHHHHTTSSTTTSSCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHcCCchh-hHHHHHHHHHHHHhhcccccccccccchHH
Confidence 4444578999999999999 5 669999999999999876 422 344566655554433 0111
Q ss_pred hh--HHHHHHHHHHHhhhhcc--ccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHH
Q 007146 122 NS--ILFELLSSVVGAANENV--ADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALALMAQS 183 (616)
Q Consensus 122 ~~--~L~~lL~tive~~~e~i--ap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~a~~~~ 183 (616)
.. --+=-|..+|.+|+=.+ =+++|.+-..|++ +... |.| +=.+.=.+|.=|+++
T Consensus 910 ~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~----~~~~-~~~---i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 910 IKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSS----WART-SGM---TGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHT----TSSS-CSS---HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHH----HhCC-CCc---hHHHHHHHHHHHHhc
Confidence 11 12556889999999998 4599998887764 5544 333 333334455566654
No 93
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Probab=21.47 E-value=1.2e+03 Score=28.72 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=89.0
Q ss_pred CCCCChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHH
Q 007146 99 YMPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVAAISKHMHPSSEPWPQVVERGFAALA 178 (616)
Q Consensus 99 ~~p~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~~~~~~~~~~~~~~pq~ve~~~~~l~ 178 (616)
.||+....-|-..++.+....+| +-+.++.+...+.+==...+|+++-||=.--.|- -.++| |.++.
T Consensus 168 ~W~~~~li~l~~mFrDv~Ls~ee---l~~VV~Kv~~~l~~l~l~ElPpLvyQLLlLs~kg-------~k~~I---L~gl~ 234 (1308)
T 3s51_A 168 RWPQRYMIQLTSVFKDVCLTPEE---MNLVVAKVLTMFSKLNLQEIPPLVYQLLVLSSKG-------SRRSV---LDGII 234 (1308)
T ss_dssp CCCTTTHHHHHHHGGGSCCCHHH---HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHTTS-------CHHHH---HHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhhhcCChhhchHHHHHHHHHhccc-------chHHH---HHHHH
Confidence 47777766666777777665555 7778888888888844448899998876422222 23444 55666
Q ss_pred HHHHHHhhhhhhhhhcccc-chhhhhhhhHHHHHHHHHHHHhhcccCCCCccccCCCCcccccHHHHHHHHHHHccccc-
Q 007146 179 LMAQSWENFLREEVELDQS-SGKWESGQAAIAKAFSALLQQAWLTHIQPLECEVSAPPSCIDDSSMLLRSIILSVSERN- 256 (616)
Q Consensus 179 a~~~~~~~~~~d~~~~~~~-~~~~a~G~~~~~~~~stlLq~a~~~p~~~~e~~~~P~~~~~~D~s~ll~~il~~~t~~~- 256 (616)
.+....+....++. +++. .+.-...---+..+=+|+|-++.. +..--..+-++.++++....
T Consensus 235 ~yF~~~~~~~~~~~-~~~~~~d~~~~s~~elr~vEgTVL~HI~~---------------Aik~D~~Lgre~LK~~K~~~~ 298 (1308)
T 3s51_A 235 AFFRELDKQHREEQ-SSDELSELITAPADELYHVEGTVILHIVF---------------AIKLDCELGRELLKHLKAGQQ 298 (1308)
T ss_dssp HHHHHHHHHHHHHH-CC-------CCSHHHHHHHHHHHHHHHHH---------------HHHHCHHHHHHHHHHHCCSST
T ss_pred HHHHHhhhhcchhc-cCCcccccccCCHHHHHHHHHHHHHHHHH---------------HHHcCHHHHHHHHHHHhhhcc
Confidence 66554432222111 1110 000011111234555677666643 22222356667777765432
Q ss_pred hhhhhhHHHHHHHHHHHHhhhhhhhhhccchhhHHHHhhh
Q 007146 257 VIEELKLSELLLVWADLIGDWHAWEETEDLSVFDCIKEIV 296 (616)
Q Consensus 257 ~~~~~kis~l~~~wa~~~~~w~~Wee~ed~~~~d~i~e~v 296 (616)
-.-+.-++|-...-...|+.=+.++ +.+||+++.+|
T Consensus 299 ~~p~~~l~PF~lalLLsvarI~Rf~----e~v~d~Lk~~v 334 (1308)
T 3s51_A 299 GDPSKCLCPFSIALLLSLTRIQRFE----EQVFDLLKTSV 334 (1308)
T ss_dssp HHHHHHCCHHHHHHHHHHTTSGGGH----HHHHHHHHHHH
T ss_pred cCccccCChHHHHHHHHHhcchhhH----HHHHHHHHHHH
Confidence 1112234444445556677777666 56899998874
No 94
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=21.44 E-value=6.1e+02 Score=25.72 Aligned_cols=158 Identities=14% Similarity=0.078 Sum_probs=102.3
Q ss_pred hHHHHHHhhC-hHHHHHHHH-----hhcccCcccCCcchhHHHhhHHHHhhhhhcCCccch----HHHHHHHHHHHhccC
Q 007146 5 GLQEFLREQK-SEFTANLVR-----SRVLPLYSVSVCLPYLVASANWILGELASCLPEDIS----ADVYSSLLKALQMLD 74 (616)
Q Consensus 5 ~L~~~L~~~~-~~~~~~l~~-----~~V~P~~~~~~~sp~LrA~A~w~~gela~~~~e~~~----~~~~~sll~~l~dp~ 74 (616)
.|.++|++|+ |+.+++..- +-++++.. ..-+.++.||--+++++=.-.|..+. .+.+.-++..++.+|
T Consensus 11 ~lre~L~sWkiK~a~ela~~~e~~l~~L~~LL~--dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d 88 (265)
T 3b2a_A 11 ELRELVLSWQILDAVSLALEDKRALFLILELAG--EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN 88 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT
T ss_pred HHHHHHHHhhHHHHHHHHHhchhHHHHHHHHHh--ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc
Confidence 5678899998 544433322 44455555 77889999999999999876555444 455556666677776
Q ss_pred CCCCCcccchhhhhHHHHHHHhcCC-CCCChhhHHHHHHhhcccccchhhHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 007146 75 KGDTSCYPVRASAAGAIVGLLENDY-MPPEWYPLLQVIVGRIGYEDEENSILFELLSSVVGAANENVADHIPYIVSSLVA 153 (616)
Q Consensus 75 ~~~~~~~PVRv~Aa~Ai~sll~~~~-~p~~~~plLq~i~~~i~~ed~e~~~L~~lL~tive~~~e~iap~~~~l~~~la~ 153 (616)
--|=+.|.-+|..||++-. -|....-+..++++-+.. -++ ++..-.....++- .++..++.+..-|
T Consensus 89 ------Ekval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~-~~~--il~~eaae~Lgkl--kv~~~~~~V~~~l-- 155 (265)
T 3b2a_A 89 ------EKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLES-PDD--MMRIETIDVLSKL--QPLEDSKLVRTYI-- 155 (265)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTS-CCH--HHHHHHHHHHHHC--CBSCCCHHHHHHH--
T ss_pred ------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcC-CCc--hHHHHHHHHhCcC--CcccchHHHHHHH--
Confidence 6678889999999999988 444555566666666663 334 3332233333333 6666666655443
Q ss_pred HHHhccCCCCCCchHHHHHHHHHHHHHHH
Q 007146 154 AISKHMHPSSEPWPQVVERGFAALALMAQ 182 (616)
Q Consensus 154 ~~~~~~~~~~~~~pq~ve~~~~~l~a~~~ 182 (616)
++++ .+ +.+|+=.-||.+|..++-
T Consensus 156 --~sLl-~S--kd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 156 --NELV-VS--PDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp --HHHH-TC--SSHHHHHHHHHHHHHHGG
T ss_pred --HHHH-hC--CChhHHHHHHHHHHHhhc
Confidence 4455 33 447777778888887764
Done!