BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007148
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKA 80
R + ++ TDV+I V +F HK L++ S + + + N +N+ D P+
Sbjct: 22 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINL-DPEINPEG 80
Query: 81 FEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVD 117
F I F Y + N++A A YL+M VD
Sbjct: 81 FNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 117
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKA 80
R + ++ TDV+I V +F HK L++ S + + + N +N+ D P+
Sbjct: 25 RLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINL-DPEINPEG 83
Query: 81 FEICAKFCYGMTVTFSAYNVVAARCAAEYLEMTEDVD 117
F I F Y + N++A A YL+M VD
Sbjct: 84 FCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVD 120
>pdb|2AZN|A Chain A, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|B Chain B, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|C Chain C, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|D Chain D, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|E Chain E, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|F Chain F, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
Length = 219
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 29/129 (22%)
Query: 387 VGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAER 446
VG ++G LA I +D ++ + I R DG+ I + LK+ P LT
Sbjct: 10 VGXTLDGKLATINNDSRISCEEDLIRVHKI----RANVDGIXVGIGTVLKDDPRLT---- 61
Query: 447 KKICGLMDVRKLTMDASVHAAQNDRLPLRVVVQVLFFEQVRAASEVHALRNNPQNASHST 506
VH ++DR P+R+VV ++R L + + +T
Sbjct: 62 -----------------VHKIKSDRNPVRIVVD----SKLRVPLNARVLNKDAKTIIATT 100
Query: 507 TNTDEEWEK 515
+T+EE EK
Sbjct: 101 EDTNEEKEK 109
>pdb|1QD1|A Chain A, The Crystal Structure Of The Formiminotransferase Domain
Of Formiminotransferase-Cyclodeaminase.
pdb|1QD1|B Chain B, The Crystal Structure Of The Formiminotransferase Domain
Of Formiminotransferase-Cyclodeaminase
Length = 325
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 403 NLTLASFIDLSQSIPESARPIHDGLYKAID--SYLKEHPDLTKAERKKICGLMDVRKLTM 460
N T+ +F+ + + E A Y+ ID + EHP + + +C + VR +TM
Sbjct: 44 NRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHPRMGALD---VCPFIPVRGVTM 100
Query: 461 DASVHAAQ--NDRLPLRVVVQV-LFFEQVRAAS 490
D V AQ RL + V V L+ E R A
Sbjct: 101 DECVRCAQAFGQRLAEELGVPVYLYGEAARTAG 133
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 30 DVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEENS--DEMNIVDFPGGPKAFEICAKF 87
D I +GE +F H+ L S S + SE N D+ + F+ +F
Sbjct: 24 DCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQV-----KADGFQKLLEF 78
Query: 88 CYGMTVTFSAYNVVAARCAAEYLEMTEDVDK 118
Y T+ ++NV AA+YL++ E V K
Sbjct: 79 IYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>pdb|3M3M|A Chain A, Crystal Structure Of Glutathione S-Transferase From
Pseudomonas Fluorescens [pf-5]
Length = 210
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 394 YLAEIAHDPNLTLASFIDLSQSIPESARP----IHDGLYKAID 432
+ + +H+P + +A FI L + +PE R +H YKA+D
Sbjct: 98 FFEQYSHEPYIAVARFIQLYEGLPEERREEYLKLHKRGYKALD 140
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 307 DNSAREDLVKRISLKLHEASV-KDLLIPARSSQTACYDVELVQCIVNE 353
D +AR LVKR+ + L EAS K ++I S + C E ++ IV +
Sbjct: 235 DEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQ 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,206,476
Number of Sequences: 62578
Number of extensions: 615266
Number of successful extensions: 1413
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1410
Number of HSP's gapped (non-prelim): 8
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)