Query 007148
Match_columns 616
No_of_seqs 324 out of 968
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 19:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 4.5E-87 9.7E-92 680.0 22.6 249 209-463 1-258 (258)
2 KOG4441 Proteins containing BT 99.9 1.1E-27 2.3E-32 269.9 13.5 226 21-318 29-260 (571)
3 PHA02713 hypothetical protein; 99.9 3E-26 6.6E-31 257.6 10.9 223 21-316 18-246 (557)
4 PHA02790 Kelch-like protein; P 99.9 1.8E-24 4E-29 239.1 10.5 174 21-252 15-195 (480)
5 PHA03098 kelch-like protein; P 99.9 1.4E-22 3.1E-27 225.3 16.4 221 25-318 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 2E-16 4.4E-21 139.2 7.9 103 22-132 4-110 (111)
7 smart00225 BTB Broad-Complex, 99.5 9.7E-15 2.1E-19 121.1 7.0 89 30-126 1-90 (90)
8 KOG4350 Uncharacterized conser 99.2 3.1E-11 6.8E-16 128.2 9.2 214 21-306 37-255 (620)
9 KOG2075 Topoisomerase TOP1-int 99.1 2.4E-10 5.2E-15 124.0 10.6 181 22-252 108-295 (521)
10 KOG4591 Uncharacterized conser 98.7 7.7E-09 1.7E-13 101.8 4.2 133 7-158 43-182 (280)
11 KOG4682 Uncharacterized conser 98.4 6.2E-07 1.3E-11 96.2 7.8 120 24-159 65-187 (488)
12 KOG0783 Uncharacterized conser 98.2 2.2E-06 4.7E-11 98.3 6.0 65 26-92 556-633 (1267)
13 KOG0783 Uncharacterized conser 97.9 1.4E-05 3.1E-10 91.8 6.0 125 30-171 712-847 (1267)
14 PF11822 DUF3342: Domain of un 97.5 7.4E-05 1.6E-09 79.1 4.1 93 31-133 1-104 (317)
15 smart00512 Skp1 Found in Skp1 96.5 0.0033 7.1E-08 56.1 4.6 79 31-112 4-104 (104)
16 PF02214 BTB_2: BTB/POZ domain 96.1 0.0039 8.4E-08 54.2 2.7 82 31-115 1-89 (94)
17 KOG2716 Polymerase delta-inter 95.0 0.1 2.2E-06 53.6 8.6 94 31-133 7-105 (230)
18 KOG3473 RNA polymerase II tran 94.9 0.07 1.5E-06 47.8 6.2 74 36-112 25-112 (112)
19 PF03931 Skp1_POZ: Skp1 family 93.9 0.12 2.7E-06 42.0 5.2 55 31-89 3-58 (62)
20 KOG2838 Uncharacterized conser 93.5 0.049 1.1E-06 56.9 2.7 99 11-113 115-219 (401)
21 KOG1724 SCF ubiquitin ligase, 91.9 0.2 4.4E-06 48.9 4.4 89 36-133 13-127 (162)
22 PF07707 BACK: BTB And C-termi 87.7 0.16 3.5E-06 43.9 -0.0 67 213-298 34-102 (103)
23 KOG2838 Uncharacterized conser 75.4 2.4 5.3E-05 44.7 3.1 56 39-97 262-330 (401)
24 KOG2714 SETA binding protein S 75.2 4.9 0.00011 44.8 5.5 81 31-114 13-99 (465)
25 KOG3840 Uncharaterized conserv 73.9 16 0.00034 39.3 8.6 111 23-135 90-222 (438)
26 KOG3713 Voltage-gated K+ chann 71.7 14 0.00031 41.8 8.1 101 2-114 12-126 (477)
27 KOG0511 Ankyrin repeat protein 67.7 8.1 0.00018 42.6 5.0 75 38-115 301-380 (516)
28 KOG0511 Ankyrin repeat protein 64.2 1.1 2.5E-05 48.9 -2.2 87 22-113 141-232 (516)
29 PF01466 Skp1: Skp1 family, di 62.6 4.9 0.00011 34.2 1.8 33 95-133 11-43 (78)
30 KOG1665 AFH1-interacting prote 57.8 37 0.0008 35.3 7.3 88 31-127 11-105 (302)
31 PF14363 AAA_assoc: Domain ass 55.9 6.9 0.00015 34.8 1.7 43 416-459 30-72 (98)
32 smart00875 BACK BTB And C-term 46.3 37 0.00079 28.6 4.6 37 214-253 35-73 (101)
33 COG5201 SKP1 SCF ubiquitin lig 43.8 67 0.0014 30.7 6.1 90 34-133 8-122 (158)
34 KOG2715 Uncharacterized conser 39.3 1E+02 0.0022 30.8 6.9 82 31-114 23-109 (210)
35 KOG1987 Speckle-type POZ prote 38.8 34 0.00074 35.6 3.9 89 37-133 109-201 (297)
36 COG3510 CmcI Cephalosporin hyd 33.7 29 0.00063 35.4 2.2 35 413-447 183-219 (237)
37 PF10929 DUF2811: Protein of u 32.8 32 0.0007 28.2 2.0 19 425-443 8-26 (57)
38 PHA00617 ribbon-helix-helix do 31.9 67 0.0015 28.1 3.9 37 217-253 44-80 (80)
39 PF11123 DNA_Packaging_2: DNA 25.0 49 0.0011 28.7 1.8 16 425-440 31-46 (82)
40 PF10932 DUF2783: Protein of u 24.4 77 0.0017 26.3 2.8 23 424-449 10-32 (60)
41 PF01402 RHH_1: Ribbon-helix-h 24.0 89 0.0019 22.5 2.9 35 218-252 5-39 (39)
42 PF07707 BACK: BTB And C-termi 22.6 66 0.0014 27.5 2.3 75 386-461 19-96 (103)
43 KOG2016 NEDD8-activating compl 21.0 1.2E+02 0.0025 34.6 4.2 101 342-443 293-434 (523)
44 smart00875 BACK BTB And C-term 20.9 2E+02 0.0044 23.9 5.0 64 386-456 19-87 (101)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=4.5e-87 Score=680.01 Aligned_cols=249 Identities=47% Similarity=0.815 Sum_probs=224.2
Q ss_pred CCchhhhcccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcCCcccc--------ccchhhhhhhHHHHHHHHHh
Q 007148 209 KDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLPDSIDA--------LVSDAQTLRNKCLVETIVCL 280 (616)
Q Consensus 209 ~~WW~EDl~~L~id~~~rVI~amks~g~~~~e~I~~aL~~Ya~r~L~~~~~~--------~~~~~~~~~~r~LLEtIv~L 280 (616)
+|||||||+.|++|+|+|||.+|+++| +++++|+++|++||++|||+..+. ........+||.+||+||+|
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~-~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~l 79 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKG-MKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSL 79 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHh
Confidence 489999999999999999999999998 599999999999999999998332 11223567999999999999
Q ss_pred cCCCCCcccChHHHHHHHhhhhhccCCHHHHHHHHHHHhhcccccCcccccccc-CCCCCccccHHHHHHHHHHHHhccC
Q 007148 281 LPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRISLKLHEASVKDLLIPA-RSSQTACYDVELVQCIVNEYLMHEK 359 (616)
Q Consensus 281 LP~ek~s~vsc~FL~~LLR~A~~l~as~~cr~~LEkrIg~qLd~AtldDLLips-~~~~~~~yDvd~V~riv~~Fl~~~~ 359 (616)
||.|+++ +||+|||+|||+|++++++..||.+||+|||.|||||||+|||||+ ++..+|+||||+|+|||++||.+++
T Consensus 80 LP~e~~s-vsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~ 158 (258)
T PF03000_consen 80 LPPEKGS-VSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEE 158 (258)
T ss_pred CCCCCCc-ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccc
Confidence 9999999 9999999999999999999999999999999999999999999999 3344699999999999999999875
Q ss_pred CCCcCCCCCCCCCCCCCcccCcchHHHHHHHHHHHHhHhcCCCCCChhhHHHHHhhcCCCCcccchhHHHHHHHHHhhCC
Q 007148 360 PSRALGDVGWNEKGPDDFVLGHGSLLAVGKLINGYLAEIAHDPNLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHP 439 (616)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~nL~~skF~~Lae~lP~~aR~~hDgLYrAIDiYLk~Hp 439 (616)
..+.. ..........++..++.+||||||+||+|||+||||+|+||++|||++|++||++|||||||||||||+||
T Consensus 159 ~~~~~----~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 159 EAGEE----EESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred ccccc----cccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 43211 11112233455789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHhhhccccCCCCCHHHh
Q 007148 440 DLTKAERKKICGLMDVRKLTMDAS 463 (616)
Q Consensus 440 ~lse~Er~~lC~~mdc~KLS~eAc 463 (616)
+||++||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=269.87 Aligned_cols=226 Identities=19% Similarity=0.230 Sum_probs=193.0
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-ccCCCCceeecCCCCCHHHHHHHHHHhcCceeEeeccc
Q 007148 21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYN 99 (616)
Q Consensus 21 ~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~N 99 (616)
-+|.++.+|||+|.|++++|++||.|||++|+||++||+.. +|..+.+|+|++++ +++++++++|+||+++.|+.+|
T Consensus 29 ~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt~~i~i~~~n 106 (571)
T KOG4441|consen 29 ELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYTGKLEISEDN 106 (571)
T ss_pred HHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhcceEEechHh
Confidence 48999999999999999999999999999999999999974 78889999999987 6999999999999999999999
Q ss_pred HHHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCCCCcc
Q 007148 100 VVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVT 179 (616)
Q Consensus 100 V~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~~~~~ 179 (616)
|+.|+.||.+|||++ |++.|+.||.+++ .+.||.++..+|+.++ | ..|..+|-.
T Consensus 107 Vq~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~----~-~~L~~~a~~------ 160 (571)
T KOG4441|consen 107 VQELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHS----C-TELLEVADE------ 160 (571)
T ss_pred HHHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcC----c-HHHHHHHHH------
Confidence 999999999999996 7789999999999 5799999999999998 5 466666542
Q ss_pred ccccccCCCCCCcccccccccccccccCCCCchhhhcccCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhhcCCc
Q 007148 180 WSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGR--MDGSVIGEALRIYAVRWLPDS 257 (616)
Q Consensus 180 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~id~~~rVI~amks~g~--~~~e~I~~aL~~Ya~r~L~~~ 257 (616)
|+ . .++...|-.||+..|+.+. ++..+.+.++ .+|+.|+++++.|+++..+
T Consensus 161 --~i------------------~--~~F~~v~~~eefl~L~~~~---l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~-- 213 (571)
T KOG4441|consen 161 --YI------------------L--QHFAEVSKTEEFLLLSLEE---LIGLLSSDDLNVDSEEEVFEAAMRWVKHDFE-- 213 (571)
T ss_pred --HH------------------H--HHHHHHhccHHhhCCCHHH---HHhhccccCCCcCCHHHHHHHHHHHHhcCHh--
Confidence 22 1 1466777899999999998 4555555443 6777899999999998765
Q ss_pred cccccchhhhhhh---HHHHHHHHHhcCCCCCcccChHHHHHHHhhhhhccCCHHHHHHHHHHH
Q 007148 258 IDALVSDAQTLRN---KCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVKRI 318 (616)
Q Consensus 258 ~~~~~~~~~~~~~---r~LLEtIv~LLP~ek~s~vsc~FL~~LLR~A~~l~as~~cr~~LEkrI 318 (616)
.|+ ..+++.| ++ | . ++..||.+.+....++..+..|+..|..=.
T Consensus 214 ----------~R~~~~~~ll~~v-r~-~----l-l~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 214 ----------EREEHLPALLEAV-RL-P----L-LPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred ----------hHHHHHHHHHHhc-Cc-c----C-CCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 222 2566666 77 7 6 999999999999999999999999886644
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=3e-26 Score=257.56 Aligned_cols=223 Identities=15% Similarity=0.145 Sum_probs=174.4
Q ss_pred eeeccCCceeEEEEEC-CEEEEecCcccccCCHHHHHhhcCC-ccC-CCCceeecCCCCCHHHHHHHHHHhcCceeEeec
Q 007148 21 RYVTSELATDVIINVG-EVKFYLHKFPLLSKSNRLHRLVLKA-SEE-NSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSA 97 (616)
Q Consensus 21 ~~~~~~~~~DV~I~Vg-~~~F~lHK~vLas~S~yfr~lf~~~-~e~-~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~ 97 (616)
.+|.++.+|||+|.|+ |++|++||.|||++|+||++||+.. +|. .+.+|+|++++ +++|+.+++|+||++ |+.
T Consensus 18 ~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~--i~~ 93 (557)
T PHA02713 18 NLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH--ISS 93 (557)
T ss_pred HHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC--CCH
Confidence 3788999999999997 8999999999999999999999975 554 36789999997 799999999999997 789
Q ss_pred ccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCCCC
Q 007148 98 YNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPAN 177 (616)
Q Consensus 98 ~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~~~ 177 (616)
+||+.|+.||++|||++ |+..|++||.+.+ ...||.+++.+++.+. |.+ |..+|..
T Consensus 94 ~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l---------~~~NCl~i~~~~~~~~----~~~-L~~~a~~---- 149 (557)
T PHA02713 94 MNVIDVLKCADYLLIDD------LVTDCESYIKDYT---------NHDTCIYMYHRLYEMS----HIP-IVKYIKR---- 149 (557)
T ss_pred HHHHHHHHHHHHHCHHH------HHHHHHHHHHhhC---------CccchHHHHHHHHhcc----chH-HHHHHHH----
Confidence 99999999999999996 7889999999999 5699999998888877 433 6555432
Q ss_pred ccccccccCCCCCCcccccccccccccccCCCCchhhhcccCChHHHHHHHHHHHhc---CCCCchhHHHHHHHHHHhhc
Q 007148 178 VTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSK---GRMDGSVIGEALRIYAVRWL 254 (616)
Q Consensus 178 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~id~~~rVI~amks~---g~~~~e~I~~aL~~Ya~r~L 254 (616)
|. . .++....-.|||..|+.+. ++..|.+. .+.+++.|.+|+++|+++..
T Consensus 150 ----~i------------------~--~~f~~v~~~~ef~~L~~~~---l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~ 202 (557)
T PHA02713 150 ----ML------------------M--SNIPTLITTDAFKKTVFEI---LFDIISTNDNVYLYREGYKVTILLKWLEYNY 202 (557)
T ss_pred ----HH------------------H--HHHHHHhCChhhhhCCHHH---HHHHhccccccCCCcHHHHHHHHHHHHhcCH
Confidence 21 0 0122233358999999998 44455442 23568899999999999875
Q ss_pred CCccccccchhhhhhhHHHHHHHHHhcCCCCCcccChHHHHHHHhhhhhccCCHHHHHHHHH
Q 007148 255 PDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGVDNSAREDLVK 316 (616)
Q Consensus 255 ~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~s~vsc~FL~~LLR~A~~l~as~~cr~~LEk 316 (616)
.. ......||+.| ++ | . ++.++++ .+.....+..++.|+..|+.
T Consensus 203 ~~----------r~~~~~ll~~V-R~-~----~-l~~~~~~-~~~~~~~i~~~~~c~~~l~~ 246 (557)
T PHA02713 203 IT----------EEQLLCILSCI-DI-Q----N-LDKKSRL-LLYSNKTINMYPSCIQFLLD 246 (557)
T ss_pred HH----------HHHHhhhHhhh-hH-h----h-cchhhhh-hhcchHHHHhhHHHHHHHhh
Confidence 41 01122677766 76 5 4 6777777 56666888889999998866
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.91 E-value=1.8e-24 Score=239.07 Aligned_cols=174 Identities=10% Similarity=0.073 Sum_probs=140.1
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-ccCCCCceeec--CCCCCHHHHHHHHHHhcCceeEeec
Q 007148 21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIV--DFPGGPKAFEICAKFCYGMTVTFSA 97 (616)
Q Consensus 21 ~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~--d~pgGa~aFelv~~FcYg~~i~It~ 97 (616)
-++.+|.+|||+..+ |.+|+|||.|||++|+|||+||++. +|+. .+|.+. +++ +++|+.+++|+|||+|.||.
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it~ 90 (480)
T PHA02790 15 ALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYIDS 90 (480)
T ss_pred HHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEec
Confidence 367889999987754 5699999999999999999999975 6664 456653 776 79999999999999999999
Q ss_pred ccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCCCC
Q 007148 98 YNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPAN 177 (616)
Q Consensus 98 ~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~~~ 177 (616)
+||+.|+.||.+|||++ |++.|++||.+++ .+.||.+++.+|+.|+ | +.|..+|-.
T Consensus 91 ~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~----~-~~L~~~a~~---- 146 (480)
T PHA02790 91 HNVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYG----L-SNLLCHTKD---- 146 (480)
T ss_pred ccHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhC----H-HHHHHHHHH----
Confidence 99999999999999996 7889999999999 5699999999999998 5 778777743
Q ss_pred ccccccccCCCCCCcccccccccccccccCCCCch--hhhcccCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHh
Q 007148 178 VTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWW--VEDICELDIDLYKRVMIAVKSKGR--MDGSVIGEALRIYAVR 252 (616)
Q Consensus 178 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW--~EDl~~L~id~~~rVI~amks~g~--~~~e~I~~aL~~Ya~r 252 (616)
|.. + +|..... +|||..|++ +..|.++.+ .+|+.|.+++++|+++
T Consensus 147 ----fi~------------------~--nF~~v~~~~~~ef~~L~~------~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 147 ----FIA------------------K--HFLELEDDIIDNFDYLSM------KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred ----HHH------------------H--hHHHHhcccchhhhhCCH------HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 220 0 1222222 378988986 234555443 4677899999999986
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=225.29 Aligned_cols=221 Identities=15% Similarity=0.102 Sum_probs=168.2
Q ss_pred cCCceeEEEEE--CCEEEEecCcccccCCHHHHHhhcCCccCCCCceeecCCCCCHHHHHHHHHHhcCceeEeecccHHH
Q 007148 25 SELATDVIINV--GEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVA 102 (616)
Q Consensus 25 ~~~~~DV~I~V--g~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~~ 102 (616)
++.+|||+|.| +|++|++||.+|+++|+||++||++... +.+|+|++ + +++|+.+++|+||++++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 68899999998 9999999999999999999999997533 56899988 5 7999999999999999999999999
Q ss_pred HHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCCCCccccc
Q 007148 103 ARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPANVTWSY 182 (616)
Q Consensus 103 L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~~~~~~s~ 182 (616)
|+.||++|||++ |+..|++||.+.+ ...||..++.+|+.+++ +.|...|-. |
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~~--------~ 132 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAYN--------Y 132 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHHH--------H
Confidence 999999999995 8899999999988 57899999999999973 444433321 1
Q ss_pred cccCCCCCCcccccccccccccccCCCCchhhhcccCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhhcCCcccc
Q 007148 183 TYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGR--MDGSVIGEALRIYAVRWLPDSIDA 260 (616)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~id~~~rVI~amks~g~--~~~e~I~~aL~~Ya~r~L~~~~~~ 260 (616)
... ++...--.+|+..|+.+..+.+ ++++.+ .+|+.|.++++.|+++.....
T Consensus 133 i~~--------------------nf~~v~~~~~f~~l~~~~l~~l---l~~~~L~v~~E~~v~~av~~W~~~~~~~r--- 186 (534)
T PHA03098 133 IRN--------------------NIELIYNDPDFIYLSKNELIKI---LSDDKLNVSSEDVVLEIIIKWLTSKKNNK--- 186 (534)
T ss_pred HHH--------------------HHHHHhcCchhhcCCHHHHHHH---hcCCCcCcCCHHHHHHHHHHHHhcChhhh---
Confidence 100 0000111468899998884444 555543 468889999999998764310
Q ss_pred ccchhhhhhhHHHHHHHHHhcCCCCCcccChHHHHHHHh------hhhhccCCHHHHHHHHHHH
Q 007148 261 LVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLK------VSVLVGVDNSAREDLVKRI 318 (616)
Q Consensus 261 ~~~~~~~~~~r~LLEtIv~LLP~ek~s~vsc~FL~~LLR------~A~~l~as~~cr~~LEkrI 318 (616)
...-..|++.| ++ | . ++..+|..+.+ ...++ .+..|+..++...
T Consensus 187 ------~~~~~~ll~~v-R~-~----~-~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 187 ------YKDICLILKVL-RI-T----F-LSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred ------HhHHHHHHhhc-cc-c----c-cCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 01112677766 77 5 4 88899998876 33444 6778888776544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.66 E-value=2e-16 Score=139.19 Aligned_cols=103 Identities=30% Similarity=0.391 Sum_probs=89.5
Q ss_pred eeccCCceeEEEEEC-CEEEEecCcccccCCHHHHHhhcCC--ccCCCCceeecCCCCCHHHHHHHHHHhcCceeEee-c
Q 007148 22 YVTSELATDVIINVG-EVKFYLHKFPLLSKSNRLHRLVLKA--SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFS-A 97 (616)
Q Consensus 22 ~~~~~~~~DV~I~Vg-~~~F~lHK~vLas~S~yfr~lf~~~--~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It-~ 97 (616)
+..++.+||++|.|+ +..|++||.+|+++|+||++||... .+....+|.+++++ +++|+.+++|+|++++.++ .
T Consensus 4 ~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~ 81 (111)
T PF00651_consen 4 LFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSD 81 (111)
T ss_dssp HHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-T
T ss_pred HHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHH
Confidence 456788999999999 8999999999999999999999976 23333478889987 7999999999999999999 9
Q ss_pred ccHHHHHHhhhccCcchhcccccHHHHHHHHHHhh
Q 007148 98 YNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSS 132 (616)
Q Consensus 98 ~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~ 132 (616)
+|+..++..|++|+|++ |...|+.||.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 99999999999999994 889999999874
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.54 E-value=9.7e-15 Score=121.09 Aligned_cols=89 Identities=28% Similarity=0.343 Sum_probs=79.3
Q ss_pred eEEEEECCEEEEecCcccccCCHHHHHhhcCC-ccCCCCceeecCCCCCHHHHHHHHHHhcCceeEeecccHHHHHHhhh
Q 007148 30 DVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAE 108 (616)
Q Consensus 30 DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~~L~cAAe 108 (616)
||+|.|||+.|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+|++++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999975 34456788898876 7999999999999999999999999999999
Q ss_pred ccCcchhcccccHHHHHH
Q 007148 109 YLEMTEDVDKKNLIFKLE 126 (616)
Q Consensus 109 yLqMte~~~~gNLi~~ce 126 (616)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999986 555553
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.21 E-value=3.1e-11 Score=128.22 Aligned_cols=214 Identities=16% Similarity=0.157 Sum_probs=139.8
Q ss_pred eeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcC-CccCCCCceeecCCCCCHHHHHHHHHHhcCceeEeeccc
Q 007148 21 RYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLK-ASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYN 99 (616)
Q Consensus 21 ~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~-~~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~N 99 (616)
.++......||++.|+++.|++||.+||++|.|||+|+-. +.|+.+..|.|++- .+++|..+++|+|+|+++++...
T Consensus 37 ~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~~~ 114 (620)
T KOG4350|consen 37 ELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLAGVE 114 (620)
T ss_pred HHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceecccch
Confidence 4667778999999999999999999999999999999886 47888888988864 37999999999999999987644
Q ss_pred H---HHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCCC
Q 007148 100 V---VAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDPA 176 (616)
Q Consensus 100 V---~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~~ 176 (616)
- ...+.-|...++.+ |-..+.+||.+.+ .++|--.++..|.-|++ ..|..-++.
T Consensus 115 ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~m--- 171 (620)
T KOG4350|consen 115 EDILLDYLSLAHRYGFIQ------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMM--- 171 (620)
T ss_pred HHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHH---
Confidence 3 34455555555553 7778999999887 45665555566665553 223222222
Q ss_pred Cccccccc-cCCCCCCcccccccccccccccCCCCchhhhcccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhhcC
Q 007148 177 NVTWSYTY-NRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRWLP 255 (616)
Q Consensus 177 ~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~id~~~rVI~amks~g~~~~e~I~~aL~~Ya~r~L~ 255 (616)
|.. |.. +.---+-|..|+-+..+.++.--. -..++..|+-|+..|-+..-.
T Consensus 172 -----fmDrnA~---------------------~lL~~~sFn~LSk~sL~e~l~RDs--FfApE~~IFlAv~~W~~~Nsk 223 (620)
T KOG4350|consen 172 -----FMDRNAD---------------------QLLEDPSFNRLSKDSLKELLARDS--FFAPELKIFLAVRSWHQNNSK 223 (620)
T ss_pred -----HHhcCHH---------------------hhhcCcchhhhhHHHHHHHHhhhc--ccchHHHHHHHHHHHHhcCch
Confidence 110 000 000012234556665444443221 124566799999999875432
Q ss_pred CccccccchhhhhhhHHHHHHHHHhcCCCCCcccChHHHHHHHhhhhhccC
Q 007148 256 DSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCSCSFLLKLLKVSVLVGV 306 (616)
Q Consensus 256 ~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~s~vsc~FL~~LLR~A~~l~a 306 (616)
...+.++|.| +| | . ++-.-|+...|-.-+|..
T Consensus 224 ------------e~~k~~~~~V-RL-P----L-m~lteLLnvVRPsGllsp 255 (620)
T KOG4350|consen 224 ------------EASKVLLELV-RL-P----L-MTLTELLNVVRPSGLLSP 255 (620)
T ss_pred ------------hhHHHHHHHH-hh-h----h-ccHHHHHhccCcccCcCH
Confidence 3345677766 77 6 4 555556665555544443
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.12 E-value=2.4e-10 Score=123.98 Aligned_cols=181 Identities=22% Similarity=0.230 Sum_probs=137.5
Q ss_pred eeccCCceeEEEEECC-----EEEEecCcccccCCHHHHHhhcCC-ccCCCCceeecCCCCCHHHHHHHHHHhcCceeEe
Q 007148 22 YVTSELATDVIINVGE-----VKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTF 95 (616)
Q Consensus 22 ~~~~~~~~DV~I~Vg~-----~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~I 95 (616)
+..+...+||.+.||+ +.||+||++|+..|.-|.+||... .+....+|.++|+. |.+|...++|+|+-.+.+
T Consensus 108 l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flYsdev~~ 185 (521)
T KOG2075|consen 108 LFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLYSDEVKL 185 (521)
T ss_pred hccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHhcchhhh
Confidence 5567889999999974 799999999999999999999975 44446899999997 699999999999999999
Q ss_pred ecccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcchhhHHHHHHHhhccCC
Q 007148 96 SAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRSVDSIASKTSVDP 175 (616)
Q Consensus 96 t~~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~Iv~rCidsLA~kA~~~~ 175 (616)
.++||..++.||.-.-.+ .|...|.+||+..+.. .+.+..|.+| ..+.++..++++|++.|...+-. .
T Consensus 186 ~~dtvi~tl~~AkKY~Vp------aLer~CVkflr~~l~~--~naf~~L~q~---A~lf~ep~Li~~c~e~id~~~~~-a 253 (521)
T KOG2075|consen 186 AADTVITTLYAAKKYLVP------ALERQCVKFLRKNLMA--DNAFLELFQR---AKLFDEPSLISICLEVIDKSFED-A 253 (521)
T ss_pred hHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHhcCC--hHHHHHHHHH---HHhhcCHHHHHHHHHHhhhHHHh-h
Confidence 999999999999776666 4889999999998864 3455555555 34567778899999888644321 0
Q ss_pred CCccccccccCCCCCCcccccccccccccccCCCCchhhhcccCChHHHHHHHHHHHhcCC-CCchhHHHHHHHHHHh
Q 007148 176 ANVTWSYTYNRKLSAPDRIVEEGVFGERIESVPKDWWVEDICELDIDLYKRVMIAVKSKGR-MDGSVIGEALRIYAVR 252 (616)
Q Consensus 176 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~EDl~~L~id~~~rVI~amks~g~-~~~e~I~~aL~~Ya~r 252 (616)
.. .. ||-|+-.+ .|.|..|+. ++.+ .++-.+++|+.+|+.-
T Consensus 254 --------------------------l~-----~E-Gf~did~~-~dt~~evl~---r~~l~~~e~~lfeA~lkw~~~ 295 (521)
T KOG2075|consen 254 --------------------------LT-----PE-GFCDIDST-RDTYEEVLR---RDTLEAREFRLFEAALKWAEA 295 (521)
T ss_pred --------------------------hC-----cc-ceeehhhH-HHHHHHHHh---hcccchhHHHHHHHHHhhccC
Confidence 00 11 23333333 777655554 4433 5666789999999863
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.73 E-value=7.7e-09 Score=101.81 Aligned_cols=133 Identities=19% Similarity=0.269 Sum_probs=105.6
Q ss_pred ccCCCcceecCc--ceeeeccCCceeEEEEEC---CEEEEecCcccccCCHHHHHhhcCCccCCCCceeecCCCCCHHHH
Q 007148 7 GSKPDTFQTDGK--CIRYVTSELATDVIINVG---EVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAF 81 (616)
Q Consensus 7 gsk~d~f~~~~~--~~~~~~~~~~~DV~I~Vg---~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~V~L~d~pgGa~aF 81 (616)
-|.||+|-.+=- ..-+.....++||++.++ ++.+++||+|||++|++.+ |.+..+.+..+..+.|.. +++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHH
Confidence 467888876521 112667788999999998 6789999999999999875 444433334456677765 7999
Q ss_pred HHHHHHhcCceeEeecccH--HHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhc
Q 007148 82 EICAKFCYGMTVTFSAYNV--VAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLK 158 (616)
Q Consensus 82 elv~~FcYg~~i~It~~NV--~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~ 158 (616)
..+++++||-.|++..+.+ ..++..|..+|..- |..+|+.=|...+ ...||..+..+||++.
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 9999999999999888776 45788899999873 7889999988877 5799999999999986
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.40 E-value=6.2e-07 Score=96.17 Aligned_cols=120 Identities=18% Similarity=0.141 Sum_probs=102.9
Q ss_pred ccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCC-ccCCCCceee--cCCCCCHHHHHHHHHHhcCceeEeecccH
Q 007148 24 TSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNI--VDFPGGPKAFEICAKFCYGMTVTFSAYNV 100 (616)
Q Consensus 24 ~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L--~d~pgGa~aFelv~~FcYg~~i~It~~NV 100 (616)
.+|.-+||+|.+-|.+.++||.-| ..|+||..||... +|++...|+| +|---...+|..++.=.|...|+|..+.|
T Consensus 65 ~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv 143 (488)
T KOG4682|consen 65 LQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDV 143 (488)
T ss_pred hcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHH
Confidence 367789999999999999999866 5699999999975 6776666654 44333479999999999999999999999
Q ss_pred HHHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhcc
Q 007148 101 VAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKI 159 (616)
Q Consensus 101 ~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~I 159 (616)
..++.||.+||+. .|+++|.+-+.+.+. .++-.+....+..||+
T Consensus 144 ~gvlAaA~~lqld------gl~qrC~evMie~ls---------pkta~~yYea~ckYgl 187 (488)
T KOG4682|consen 144 VGVLAAACLLQLD------GLIQRCGEVMIETLS---------PKTACGYYEAACKYGL 187 (488)
T ss_pred HHHHHHHHHHHHh------hHHHHHHHHHHHhcC---------hhhhhHhhhhhhhhhh
Confidence 9999999999998 489999999999994 5788888899999986
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.17 E-value=2.2e-06 Score=98.25 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=54.0
Q ss_pred CCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCccC-------------CCCceeecCCCCCHHHHHHHHHHhcCce
Q 007148 26 ELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEE-------------NSDEMNIVDFPGGPKAFEICAKFCYGMT 92 (616)
Q Consensus 26 ~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~e~-------------~~~~V~L~d~pgGa~aFelv~~FcYg~~ 92 (616)
+-..|||++||+.-|++||++|+++|++||+||.....+ ....|.+.++| |.+||+++.|+||.+
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 346799999999999999999999999999999853211 12345678998 599999999999976
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.90 E-value=1.4e-05 Score=91.77 Aligned_cols=125 Identities=19% Similarity=0.194 Sum_probs=93.3
Q ss_pred eEEEEE-CCEEEEecCcccccCCHHHHHhhcCC-ccCCCCceeecCCCCCHHHHHHHHHHhcC-ceeEe-----ecccHH
Q 007148 30 DVIINV-GEVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYG-MTVTF-----SAYNVV 101 (616)
Q Consensus 30 DV~I~V-g~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~d~pgGa~aFelv~~FcYg-~~i~I-----t~~NV~ 101 (616)
|+.|.. +|+.|+|||.+|++++.||..||... .|... |.....|-.++.++.+++|.|. -++.+ ..+=+.
T Consensus 712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred eEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 444444 88899999999999999999999864 45443 5555566568999999999993 33332 112246
Q ss_pred HHHHhhhccCcchhcccccHHHHHHHHHHhhhccchhhHHHHHhcccchHhhhhhhc---chhhHHHHHHHhh
Q 007148 102 AARCAAEYLEMTEDVDKKNLIFKLEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLK---IIGRSVDSIASKT 171 (616)
Q Consensus 102 ~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v~~sw~dsi~~L~~C~~L~~~Ae~~~---Iv~rCidsLA~kA 171 (616)
.++..|+.|=+++ |...||.-|.+.+ .|++|..|+.+|.-|+ +-.+|+|=|.-..
T Consensus 790 ~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 790 EILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 6777788887875 7788999888888 6899999999998774 4568888765443
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.51 E-value=7.4e-05 Score=79.08 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=75.1
Q ss_pred EEEEECC------EEEEecCcccccCCHHHHHhhcC----CccCCCCceeec-CCCCCHHHHHHHHHHhcCceeEeeccc
Q 007148 31 VIINVGE------VKFYLHKFPLLSKSNRLHRLVLK----ASEENSDEMNIV-DFPGGPKAFEICAKFCYGMTVTFSAYN 99 (616)
Q Consensus 31 V~I~Vg~------~~F~lHK~vLas~S~yfr~lf~~----~~e~~~~~V~L~-d~pgGa~aFelv~~FcYg~~i~It~~N 99 (616)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. ..+...-.|-++ |+ .+|+-+++|+++....||+.|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666622 58999999999999999999954 222222333344 66 699999999999999999999
Q ss_pred HHHHHHhhhccCcchhcccccHHHHHHHHHHhhh
Q 007148 100 VVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (616)
Q Consensus 100 V~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v 133 (616)
|+.++-.|+||||++ |++.|-.|+...+
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999996 7888988887766
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.53 E-value=0.0033 Score=56.14 Aligned_cols=79 Identities=13% Similarity=0.262 Sum_probs=60.2
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCc-c-CCCCceeecCCCCCHHHHHHHHHHhcCce-----------e---
Q 007148 31 VIINV-GEVKFYLHKFPLLSKSNRLHRLVLKAS-E-ENSDEMNIVDFPGGPKAFEICAKFCYGMT-----------V--- 93 (616)
Q Consensus 31 V~I~V-g~~~F~lHK~vLas~S~yfr~lf~~~~-e-~~~~~V~L~d~pgGa~aFelv~~FcYg~~-----------i--- 93 (616)
|+++- +|+.|.+.+.+. ..|+-++.|+.... + .....|.|++|++ .+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~--~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTS--KILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCH--HHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45544 889999998855 68999999998642 1 1225789999985 99999999998321 1
Q ss_pred -----EeecccHHHHHHhhhccCc
Q 007148 94 -----TFSAYNVVAARCAAEYLEM 112 (616)
Q Consensus 94 -----~It~~NV~~L~cAAeyLqM 112 (616)
.+...++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1566688999999999985
No 16
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.11 E-value=0.0039 Score=54.24 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=61.6
Q ss_pred EEEEECCEEEEecCcccc-cCCHHHHHhhcCC----ccCCCCceeecCCCCCHHHHHHHHHHhcC-ceeEee-cccHHHH
Q 007148 31 VIINVGEVKFYLHKFPLL-SKSNRLHRLVLKA----SEENSDEMNIVDFPGGPKAFEICAKFCYG-MTVTFS-AYNVVAA 103 (616)
Q Consensus 31 V~I~Vg~~~F~lHK~vLa-s~S~yfr~lf~~~----~e~~~~~V~L~d~pgGa~aFelv~~FcYg-~~i~It-~~NV~~L 103 (616)
|+|.|||+.|.+-+..|. -...+|.+|+... .......+-|. -.|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 4467999999853 22344566653 247999999999999 777774 6788899
Q ss_pred HHhhhccCcchh
Q 007148 104 RCAAEYLEMTED 115 (616)
Q Consensus 104 ~cAAeyLqMte~ 115 (616)
+..|+|.++.+.
T Consensus 78 ~~Ea~fy~l~~l 89 (94)
T PF02214_consen 78 LEEAEFYGLDEL 89 (94)
T ss_dssp HHHHHHHT-HHH
T ss_pred HHHHHHcCCCcc
Confidence 999999999863
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.1 Score=53.62 Aligned_cols=94 Identities=21% Similarity=0.202 Sum_probs=74.9
Q ss_pred EEEEECCEEEEecCcccccCCHHHHHhhcCCc--cCC-CCceeecCCCCCHHHHHHHHHHhcCceeEe--ecccHHHHHH
Q 007148 31 VIINVGEVKFYLHKFPLLSKSNRLHRLVLKAS--EEN-SDEMNIVDFPGGPKAFEICAKFCYGMTVTF--SAYNVVAARC 105 (616)
Q Consensus 31 V~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~--e~~-~~~V~L~d~pgGa~aFelv~~FcYg~~i~I--t~~NV~~L~c 105 (616)
|-+.|||..|..+|.-|--..|+|+.|+...- +.+ ..-|-|. -.|.=|++|++|+=.|.+.| +.-++..|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999998642 222 2335553 23699999999999777665 5567779999
Q ss_pred hhhccCcchhcccccHHHHHHHHHHhhh
Q 007148 106 AAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (616)
Q Consensus 106 AAeyLqMte~~~~gNLi~~ce~FL~~~v 133 (616)
=|+|..+++ |++.|+.=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999995 8899998777654
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.91 E-value=0.07 Score=47.80 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=59.6
Q ss_pred CCEEEEecCcccccCCHHHHHhhcCC---ccCCCCceeecCCCCCHHHHHHHHHHh-----cCc------eeEeecccHH
Q 007148 36 GEVKFYLHKFPLLSKSNRLHRLVLKA---SEENSDEMNIVDFPGGPKAFEICAKFC-----YGM------TVTFSAYNVV 101 (616)
Q Consensus 36 g~~~F~lHK~vLas~S~yfr~lf~~~---~e~~~~~V~L~d~pgGa~aFelv~~Fc-----Yg~------~i~It~~NV~ 101 (616)
+|.+|-+-|. .|.-|+-+|+|+... .+...++|.+.+|| +..+|.+..|. |++ +++|-++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 7788988665 677899999999963 35566789999999 69999988775 333 3568888899
Q ss_pred HHHHhhhccCc
Q 007148 102 AARCAAEYLEM 112 (616)
Q Consensus 102 ~L~cAAeyLqM 112 (616)
.|+.||+||+.
T Consensus 102 eLL~aAn~Lec 112 (112)
T KOG3473|consen 102 ELLMAANYLEC 112 (112)
T ss_pred HHHHHhhhhcC
Confidence 99999999973
No 19
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.90 E-value=0.12 Score=42.02 Aligned_cols=55 Identities=9% Similarity=0.262 Sum_probs=42.6
Q ss_pred EEEEE-CCEEEEecCcccccCCHHHHHhhcCCccCCCCceeecCCCCCHHHHHHHHHHhc
Q 007148 31 VIINV-GEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCY 89 (616)
Q Consensus 31 V~I~V-g~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~V~L~d~pgGa~aFelv~~FcY 89 (616)
|+|+- +|+.|.+.+.+ |-.|+.++.|+........ .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45544 88999998875 4579999999986533222 79999998 499999999997
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=93.53 E-value=0.049 Score=56.88 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=71.5
Q ss_pred CcceecCcceeeeccCCceeEEEEECCEEEEecCcccccCCHHHHHhhcCCccCC---CCceeecCCCCCHHHHHHHHHH
Q 007148 11 DTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSKSNRLHRLVLKASEEN---SDEMNIVDFPGGPKAFEICAKF 87 (616)
Q Consensus 11 d~f~~~~~~~~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~yfr~lf~~~~e~~---~~~V~L~d~pgGa~aFelv~~F 87 (616)
.+|+++=-. .....+.+||-|......|++||+.|+++|++|+-+.....+.. ...++.-+|. -++|+..+.+
T Consensus 115 ~sf~kD~ad--~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~ 190 (401)
T KOG2838|consen 115 NSFLKDFAD--GYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHS 190 (401)
T ss_pred hHHHHHHhh--hhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHH
Confidence 456655322 34455678999999999999999999999999998887654432 2345666776 4899999999
Q ss_pred hcCceeE---eecccHHHHHHhhhccCcc
Q 007148 88 CYGMTVT---FSAYNVVAARCAAEYLEMT 113 (616)
Q Consensus 88 cYg~~i~---It~~NV~~L~cAAeyLqMt 113 (616)
.|++..- +.-.|+..|..-.+-++-.
T Consensus 191 l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 191 LITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 9998763 4446666666555555544
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.2 Score=48.88 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCEEEEecCcccccCCHHHHHhhcCCc-cCCCCceeecCCCCCHHHHHHHHHHhcCcee---------------------
Q 007148 36 GEVKFYLHKFPLLSKSNRLHRLVLKAS-EENSDEMNIVDFPGGPKAFEICAKFCYGMTV--------------------- 93 (616)
Q Consensus 36 g~~~F~lHK~vLas~S~yfr~lf~~~~-e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i--------------------- 93 (616)
+|+.|..-.. .|.+|.-++.++.+.. ..+...|-|+++.| .+|.+|+.|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~--~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVTS--KILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccCH--HHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 7888888666 5667889999887642 11114688888874 999999999996331
Q ss_pred ----EeecccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhh
Q 007148 94 ----TFSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (616)
Q Consensus 94 ----~It~~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v 133 (616)
.+...++..|.-||.||+|+ +|+..|+......+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~------gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIK------GLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccH------HHHHHHHHHHHHHH
Confidence 14445789999999999999 58888988888776
No 22
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=87.70 E-value=0.16 Score=43.93 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=40.3
Q ss_pred hhhcccCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhhcCCccccccchhhhhhhHHHHHHHHHhcCCCCCcccC
Q 007148 213 VEDICELDIDLYKRVMIAVKSKGR--MDGSVIGEALRIYAVRWLPDSIDALVSDAQTLRNKCLVETIVCLLPTDKSVGCS 290 (616)
Q Consensus 213 ~EDl~~L~id~~~rVI~amks~g~--~~~e~I~~aL~~Ya~r~L~~~~~~~~~~~~~~~~r~LLEtIv~LLP~ek~s~vs 290 (616)
.+++..||++.+. .-+.+..+ .++..|.++++.|+++..+.. ......|++.| ++ | . +|
T Consensus 34 ~~~f~~L~~~~l~---~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r---------~~~~~~Ll~~i-R~-~----~-l~ 94 (103)
T PF07707_consen 34 SDEFLELPFDQLI---EILSSDDLNVSSEDDVFEAVLRWLKHNPENR---------EEHLKELLSCI-RF-P----L-LS 94 (103)
T ss_dssp SHHHHCS-HHHHH---HHHHTSS--ECTCCCHHHHHHHHHHCTHHHH---------TTTHHHHHCCC-HH-H----C-T-
T ss_pred chhhhcCCHHHHH---HHHhccccccccHHHHHHHHHHHHHhCHHHH---------HHHHHHHHHhC-Cc-c----c-CC
Confidence 5689999999954 44444543 467799999999998764310 01122555544 55 3 3 77
Q ss_pred hHHHHHHH
Q 007148 291 CSFLLKLL 298 (616)
Q Consensus 291 c~FL~~LL 298 (616)
..+|...+
T Consensus 95 ~~~L~~~v 102 (103)
T PF07707_consen 95 PEELQNVV 102 (103)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHH
Confidence 77776543
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=75.39 E-value=2.4 Score=44.67 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=39.9
Q ss_pred EEEecCcccccCCHHHHHhhcC----Ccc------CCCCceeecC--CCCCHHHHHH-HHHHhcCceeEeec
Q 007148 39 KFYLHKFPLLSKSNRLHRLVLK----ASE------ENSDEMNIVD--FPGGPKAFEI-CAKFCYGMTVTFSA 97 (616)
Q Consensus 39 ~F~lHK~vLas~S~yfr~lf~~----~~e------~~~~~V~L~d--~pgGa~aFel-v~~FcYg~~i~It~ 97 (616)
++.+||.+.+++|++||.|+-. ..| ....+|.+.. || .+|.. ++.|+||-.++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~P---kafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIFP---KAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhcc---hhhhhhhhhhheecccchhh
Confidence 5789999999999999998752 222 1235676654 44 67764 56889998887654
No 24
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=75.19 E-value=4.9 Score=44.77 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=60.1
Q ss_pred EEEEECCEEEEecCcccccCC--HHHHHhhcCC--ccCCC-CceeecCCCCCHHHHHHHHHHhcCceeEeecccHHHHHH
Q 007148 31 VIINVGEVKFYLHKFPLLSKS--NRLHRLVLKA--SEENS-DEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARC 105 (616)
Q Consensus 31 V~I~Vg~~~F~lHK~vLas~S--~yfr~lf~~~--~e~~~-~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~~L~c 105 (616)
|-+.|||+.|.--+.-|+... .+|-+|++.. ..... ..|-|. -.|+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 578999999999999887765 6899999742 12222 234443 336999999999999999995544444444
Q ss_pred -hhhccCcch
Q 007148 106 -AAEYLEMTE 114 (616)
Q Consensus 106 -AAeyLqMte 114 (616)
=|.|.+++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999986
No 25
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=73.89 E-value=16 Score=39.35 Aligned_cols=111 Identities=19% Similarity=0.268 Sum_probs=75.1
Q ss_pred eccCCceeEEEEECCEEEEecCcccccCCH-HHHHhhcCC----ccCCCCceeec-CCCCCHHHHHHHHHHhcCceeEee
Q 007148 23 VTSELATDVIINVGEVKFYLHKFPLLSKSN-RLHRLVLKA----SEENSDEMNIV-DFPGGPKAFEICAKFCYGMTVTFS 96 (616)
Q Consensus 23 ~~~~~~~DV~I~Vg~~~F~lHK~vLas~S~-yfr~lf~~~----~e~~~~~V~L~-d~pgGa~aFelv~~FcYg~~i~It 96 (616)
+..|-.--++..|++..|-.-+++|-+.-. -+-+||... ...+..+.++. |+ |...|..|++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 334455567889999999999999887633 344666532 22334567764 55 37899999999888887753
Q ss_pred -cccHHHHHHhhhccCcchhc---------------ccccHHHHHHHHHHhhhcc
Q 007148 97 -AYNVVAARCAAEYLEMTEDV---------------DKKNLIFKLEVFLNSSIFR 135 (616)
Q Consensus 97 -~~NV~~L~cAAeyLqMte~~---------------~~gNLi~~ce~FL~~~v~~ 135 (616)
.-.|-.|+.|.+||-++=++ +...-.++-+.||++.|++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 35688999999999876322 1122345566677766643
No 26
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=71.69 E-value=14 Score=41.78 Aligned_cols=101 Identities=23% Similarity=0.244 Sum_probs=65.2
Q ss_pred CccccccCCCcceecCcceeeeccCCceeEEEEECCEEEEecCcccccC-CHHHHHhhcCC-c----------cCCCCce
Q 007148 2 KFMKLGSKPDTFQTDGKCIRYVTSELATDVIINVGEVKFYLHKFPLLSK-SNRLHRLVLKA-S----------EENSDEM 69 (616)
Q Consensus 2 ~~mklgsk~d~f~~~~~~~~~~~~~~~~DV~I~Vg~~~F~lHK~vLas~-S~yfr~lf~~~-~----------e~~~~~V 69 (616)
.++..|..|+..+.++ ....-|+|.|||..+.+-+..|... =.++.++.... . +...++.
T Consensus 12 ~~~~~~~~~~~~~~~~--------~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~Ey 83 (477)
T KOG3713|consen 12 DVPVGGPEPEGIIRDG--------ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEY 83 (477)
T ss_pred cccccCCCCccccCCC--------CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCee
Confidence 3455566666666553 2245589999999999988877663 23444444421 1 1223455
Q ss_pred eecCCCCCHHHHHHHHHHhcCceeEeecccHHHHHHh--hhccCcch
Q 007148 70 NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCA--AEYLEMTE 114 (616)
Q Consensus 70 ~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~~L~cA--AeyLqMte 114 (616)
-+.- .|.+|..+++|-+||++.. +.+|..+.-. -+|-++.+
T Consensus 84 fFDR---~P~~F~~Vl~fYrtGkLH~-p~~vC~~~F~eEL~yWgI~~ 126 (477)
T KOG3713|consen 84 FFDR---HPGAFAYVLNFYRTGKLHV-PADVCPLSFEEELDYWGIDE 126 (477)
T ss_pred eecc---ChHHHHHHHHHHhcCeecc-ccccchHHHHHHHHHhCCCh
Confidence 5543 4689999999999999998 6677665433 35666665
No 27
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=67.66 E-value=8.1 Score=42.58 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=54.6
Q ss_pred EEEEecCcccccCCHHHHHhhcCC-ccCC-CCce---eecCCCCCHHHHHHHHHHhcCceeEeecccHHHHHHhhhccCc
Q 007148 38 VKFYLHKFPLLSKSNRLHRLVLKA-SEEN-SDEM---NIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARCAAEYLEM 112 (616)
Q Consensus 38 ~~F~lHK~vLas~S~yfr~lf~~~-~e~~-~~~V---~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~~L~cAAeyLqM 112 (616)
..+|+|..++. +..||+.||++. .|+. +..+ .|+.+. ....|++++|.|+-+-+|-+.=...++--|..|-.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 45999999775 568999999975 4422 2222 233332 57889999999999999988877778888888776
Q ss_pred chh
Q 007148 113 TED 115 (616)
Q Consensus 113 te~ 115 (616)
..+
T Consensus 378 ~~d 380 (516)
T KOG0511|consen 378 ADD 380 (516)
T ss_pred hhh
Confidence 643
No 28
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=64.21 E-value=1.1 Score=48.92 Aligned_cols=87 Identities=18% Similarity=0.032 Sum_probs=53.6
Q ss_pred eeccCC--ceeEEEEE-CCEEEEecCcccccCCHHHHH-hhcCCccCCCCce-eecCCCCCHHHHHHHHHHhcCceeEee
Q 007148 22 YVTSEL--ATDVIINV-GEVKFYLHKFPLLSKSNRLHR-LVLKASEENSDEM-NIVDFPGGPKAFEICAKFCYGMTVTFS 96 (616)
Q Consensus 22 ~~~~~~--~~DV~I~V-g~~~F~lHK~vLas~S~yfr~-lf~~~~e~~~~~V-~L~d~pgGa~aFelv~~FcYg~~i~It 96 (616)
++.+++ ..|++..+ .|..|-+||+.|+++|.||.. +...... ..+| .+.-+ +.+|+..++|.|-..-.+-
T Consensus 141 l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~--~heI~~~~v~---~~~f~~flk~lyl~~na~~ 215 (516)
T KOG0511|consen 141 LRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ--GHEIEAHRVI---LSAFSPFLKQLYLNTNAEW 215 (516)
T ss_pred hhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc--cCchhhhhhh---HhhhhHHHHHHHHhhhhhh
Confidence 555654 45888766 788999999999999877653 3322211 1233 33334 4899999999996532233
Q ss_pred cccHHHHHHhhhccCcc
Q 007148 97 AYNVVAARCAAEYLEMT 113 (616)
Q Consensus 97 ~~NV~~L~cAAeyLqMt 113 (616)
+.---+|+.-..-++..
T Consensus 216 ~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 216 KDQYNALLSIEVKFSKE 232 (516)
T ss_pred hhHHHHHHhhhhhccHH
Confidence 33334555555555543
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=62.58 E-value=4.9 Score=34.20 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=27.0
Q ss_pred eecccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhh
Q 007148 95 FSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (616)
Q Consensus 95 It~~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v 133 (616)
++...+..|+.||.||+|. .|+..|+.++...+
T Consensus 11 ~~~~~L~~l~~AA~yL~I~------~L~~~~~~~iA~~i 43 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIK------GLLDLCCKYIANMI 43 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-H------HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcch------HHHHHHHHHHHHHh
Confidence 3667899999999999999 48889999998776
No 30
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=57.85 E-value=37 Score=35.28 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=65.4
Q ss_pred EEEEECCEEEEecCcccccC--CHHHHHhhcCC----ccCCCCceeecCCCCCHHHHHHHHHHhcCcee-EeecccHHHH
Q 007148 31 VIINVGEVKFYLHKFPLLSK--SNRLHRLVLKA----SEENSDEMNIVDFPGGPKAFEICAKFCYGMTV-TFSAYNVVAA 103 (616)
Q Consensus 31 V~I~Vg~~~F~lHK~vLas~--S~yfr~lf~~~----~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i-~It~~NV~~L 103 (616)
|-+.+||+.|.--..-|.-+ =.-+-+||... .+.++.-+-|.- .|.-||-|+.|.--|.| ..+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 66889999999888888777 34788899853 233333444432 35899999999998765 4677899999
Q ss_pred HHhhhccCcchhcccccHHHHHHH
Q 007148 104 RCAAEYLEMTEDVDKKNLIFKLEV 127 (616)
Q Consensus 104 ~cAAeyLqMte~~~~gNLi~~ce~ 127 (616)
+.+|.|+|+-. |++..++
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999974 5555554
No 31
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=55.94 E-value=6.9 Score=34.81 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=33.7
Q ss_pred cCCCCcccchhHHHHHHHHHhhCCCCcHHHHHhhhccccCCCCC
Q 007148 416 IPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLT 459 (616)
Q Consensus 416 lP~~aR~~hDgLYrAIDiYLk~Hp~lse~Er~~lC~~mdc~KLS 459 (616)
+|++..-....||+|+..||.+.....- .|-++++.-|-+.++
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~~ 72 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNLV 72 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCceE
Confidence 4444556788999999999999987775 888888887776643
No 32
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=46.28 E-value=37 Score=28.61 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=27.3
Q ss_pred hhcccCChHHHHHHHHHHHhcCC--CCchhHHHHHHHHHHhh
Q 007148 214 EDICELDIDLYKRVMIAVKSKGR--MDGSVIGEALRIYAVRW 253 (616)
Q Consensus 214 EDl~~L~id~~~rVI~amks~g~--~~~e~I~~aL~~Ya~r~ 253 (616)
+++..|+.+....++ ++..+ ..+..|.++++.|+++.
T Consensus 35 ~~f~~L~~~~l~~iL---~~d~l~v~~E~~v~~av~~W~~~~ 73 (101)
T smart00875 35 EEFLELSLEQLLSLL---SSDDLNVPSEEEVFEAVLRWVKHD 73 (101)
T ss_pred cHHhcCCHHHHHHHh---CcccCCCCCHHHHHHHHHHHHHCC
Confidence 788999999855444 44433 35778999999999875
No 33
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=43.80 E-value=67 Score=30.72 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=60.5
Q ss_pred EECCEEEEecCcccccCCHHHHHhhcCCccCCCCceeecCCCCCHHHHHHHHHHhcCceeE-------------------
Q 007148 34 NVGEVKFYLHKFPLLSKSNRLHRLVLKASEENSDEMNIVDFPGGPKAFEICAKFCYGMTVT------------------- 94 (616)
Q Consensus 34 ~Vg~~~F~lHK~vLas~S~yfr~lf~~~~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~------------------- 94 (616)
..+|+.|.+.+. .|-+|-.++.|+....+.+- .+.++++. +..|..+.+||---+=.
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~w 83 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFW 83 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccHH
Confidence 458899999876 68889999998886554432 23344443 68999999999632211
Q ss_pred ------eecccHHHHHHhhhccCcchhcccccHHHHHHHHHHhhh
Q 007148 95 ------FSAYNVVAARCAAEYLEMTEDVDKKNLIFKLEVFLNSSI 133 (616)
Q Consensus 95 ------It~~NV~~L~cAAeyLqMte~~~~gNLi~~ce~FL~~~v 133 (616)
+...-...+.-||.||++.. |++.||.-..+.+
T Consensus 84 dr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 84 DRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 11223455677888888874 6677777776665
No 34
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=39.33 E-value=1e+02 Score=30.78 Aligned_cols=82 Identities=18% Similarity=0.213 Sum_probs=61.0
Q ss_pred EEEEECCEEEEecCcccccCC-HHHHHhhcCCc----cCCCCceeecCCCCCHHHHHHHHHHhcCceeEeecccHHHHHH
Q 007148 31 VIINVGEVKFYLHKFPLLSKS-NRLHRLVLKAS----EENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVVAARC 105 (616)
Q Consensus 31 V~I~Vg~~~F~lHK~vLas~S-~yfr~lf~~~~----e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~~L~c 105 (616)
|-+.|||..|.--|.-|.--+ .++.+++.... +.+..--.|-|= .|.-|.-+++|.--|++-|+.-.=..++.
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGvL~ 100 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGVLE 100 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhccch
Confidence 567899999999999999887 55566655432 222233334332 36899999999999999999866667888
Q ss_pred hhhccCcch
Q 007148 106 AAEYLEMTE 114 (616)
Q Consensus 106 AAeyLqMte 114 (616)
-|+|...+.
T Consensus 101 EAefyn~~~ 109 (210)
T KOG2715|consen 101 EAEFYNDPS 109 (210)
T ss_pred hhhccCChH
Confidence 899998884
No 35
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.77 E-value=34 Score=35.57 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=62.3
Q ss_pred CEEEEecCcccccCCHHHHHhhcCC-ccCCCCceeecCCCCCHHHHHHHHHHhcCceeEeecccHH---HHHHhhhccCc
Q 007148 37 EVKFYLHKFPLLSKSNRLHRLVLKA-SEENSDEMNIVDFPGGPKAFEICAKFCYGMTVTFSAYNVV---AARCAAEYLEM 112 (616)
Q Consensus 37 ~~~F~lHK~vLas~S~yfr~lf~~~-~e~~~~~V~L~d~pgGa~aFelv~~FcYg~~i~It~~NV~---~L~cAAeyLqM 112 (616)
+..+..|+.++++++.-|+.|+... .+.....+.+.+.. ++.|+.+..|.|...-.-+..++. .+.++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999998854 22223344555554 588888899999854443444443 66666665555
Q ss_pred chhcccccHHHHHHHHHHhhh
Q 007148 113 TEDVDKKNLIFKLEVFLNSSI 133 (616)
Q Consensus 113 te~~~~gNLi~~ce~FL~~~v 133 (616)
. .|...|...|.+.+
T Consensus 187 ~------~lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 R------HLKLACMPVLLSLI 201 (297)
T ss_pred H------HHHHHHHHHHHHHH
Confidence 5 47888998888776
No 36
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.71 E-value=29 Score=35.37 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=27.3
Q ss_pred HhhcC--CCCcccchhHHHHHHHHHhhCCCCcHHHHH
Q 007148 413 SQSIP--ESARPIHDGLYKAIDSYLKEHPDLTKAERK 447 (616)
Q Consensus 413 ae~lP--~~aR~~hDgLYrAIDiYLk~Hp~lse~Er~ 447 (616)
.+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 35566 566667899999999999999976666653
No 37
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=32.78 E-value=32 Score=28.18 Aligned_cols=19 Identities=21% Similarity=0.660 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHhhCCCCcH
Q 007148 425 DGLYKAIDSYLKEHPDLTK 443 (616)
Q Consensus 425 DgLYrAIDiYLk~Hp~lse 443 (616)
-.||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 4699999999999998764
No 38
>PHA00617 ribbon-helix-helix domain containing protein
Probab=31.85 E-value=67 Score=28.08 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=33.5
Q ss_pred ccCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHhh
Q 007148 217 CELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVRW 253 (616)
Q Consensus 217 ~~L~id~~~rVI~amks~g~~~~e~I~~aL~~Ya~r~ 253 (616)
..|+.++.+++-...+..|..+.++|-+||..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999888999999999998876
No 39
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=25.05 E-value=49 Score=28.71 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHhhCCC
Q 007148 425 DGLYKAIDSYLKEHPD 440 (616)
Q Consensus 425 DgLYrAIDiYLk~Hp~ 440 (616)
-.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999964
No 40
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=24.41 E-value=77 Score=26.28 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHhhCCCCcHHHHHhh
Q 007148 424 HDGLYKAIDSYLKEHPDLTKAERKKI 449 (616)
Q Consensus 424 hDgLYrAIDiYLk~Hp~lse~Er~~l 449 (616)
.|+.|.| .+.+|.+|+++|-..+
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~~l 32 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSAAL 32 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHHHH
Confidence 3999998 5889999999986543
No 41
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=24.00 E-value=89 Score=22.50 Aligned_cols=35 Identities=37% Similarity=0.494 Sum_probs=28.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHHh
Q 007148 218 ELDIDLYKRVMIAVKSKGRMDGSVIGEALRIYAVR 252 (616)
Q Consensus 218 ~L~id~~~rVI~amks~g~~~~e~I~~aL~~Ya~r 252 (616)
.||.+.++++=...+..|+-..++|-.+|..|+.+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 46778888888888888877788899999988764
No 42
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=22.56 E-value=66 Score=27.47 Aligned_cols=75 Identities=17% Similarity=0.323 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhHhcCCC---CCChhhHHHHHhhcCCCCcccchhHHHHHHHHHhhCCCCcHHHHHhhhccccCCCCCHH
Q 007148 386 AVGKLINGYLAEIAHDP---NLTLASFIDLSQSIPESARPIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVRKLTMD 461 (616)
Q Consensus 386 ~VakLvD~YLaEiA~D~---nL~~skF~~Lae~lP~~aR~~hDgLYrAIDiYLk~Hp~lse~Er~~lC~~mdc~KLS~e 461 (616)
++-+.|.....+|..++ +|++..+..+-.. ++-....-|.+|.||-.|++.+|.-.+..-.+|.+.+...-||++
T Consensus 19 ~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~-~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~ 96 (103)
T PF07707_consen 19 ACLRFIAKNFNEVSKSDEFLELPFDQLIEILSS-DDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPE 96 (103)
T ss_dssp HHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHT-SS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HH
T ss_pred HHHHHHHHHHHHHccchhhhcCCHHHHHHHHhc-cccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHH
Confidence 33344555555676554 6888888877774 555556789999999999999976444455566666666666554
No 43
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=20.99 E-value=1.2e+02 Score=34.62 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=62.6
Q ss_pred ccHHHHHHHHHHHHhccCCCCcCCCCCCCCCCCCCcc-----------cCcchHHHHHHHHHHHHhHhcCCC--------
Q 007148 342 YDVELVQCIVNEYLMHEKPSRALGDVGWNEKGPDDFV-----------LGHGSLLAVGKLINGYLAEIAHDP-------- 402 (616)
Q Consensus 342 yDvd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~VakLvD~YLaEiA~D~-------- 402 (616)
-|--.+.+.+++|+.++......-.+-..+ ..+... -...-..+|.+.|-.+|.+++.+|
T Consensus 293 ~~FWim~~aLk~Fv~~e~~g~lPL~GtlPD-M~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~i 371 (523)
T KOG2016|consen 293 SDFWIMAAALKEFVLKEEGGFLPLRGTLPD-MTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVI 371 (523)
T ss_pred cHHHHHHHHHHHHHcccCCCccCCCCCCCc-cccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHH
Confidence 466778899999998754321100000000 000000 012456789999999999999985
Q ss_pred --------CCChhhHHHHHhhcCCCCc-----ccchh---------HHHHHHHHHhhCCCCcH
Q 007148 403 --------NLTLASFIDLSQSIPESAR-----PIHDG---------LYKAIDSYLKEHPDLTK 443 (616)
Q Consensus 403 --------nL~~skF~~Lae~lP~~aR-----~~hDg---------LYrAIDiYLk~Hp~lse 443 (616)
+|++-.|..|++-.-++.+ ...|. +|||+|.||+.|-....
T Consensus 372 k~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG 434 (523)
T KOG2016|consen 372 KLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG 434 (523)
T ss_pred HHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 4666666677776654444 33333 79999999999876554
No 44
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=20.87 E-value=2e+02 Score=23.94 Aligned_cols=64 Identities=17% Similarity=0.368 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHhcCCC---CCChhhHHHHHhhcCCCCc--ccchhHHHHHHHHHhhCCCCcHHHHHhhhccccCC
Q 007148 386 AVGKLINGYLAEIAHDP---NLTLASFIDLSQSIPESAR--PIHDGLYKAIDSYLKEHPDLTKAERKKICGLMDVR 456 (616)
Q Consensus 386 ~VakLvD~YLaEiA~D~---nL~~skF~~Lae~lP~~aR--~~hDgLYrAIDiYLk~Hp~lse~Er~~lC~~mdc~ 456 (616)
++-+.|.....+++.++ +|++..+.. .+....- ..-+.+|.||-.+++.++ .+|+.+.++|.+=
T Consensus 19 ~~~~~i~~nf~~~~~~~~f~~L~~~~l~~---iL~~d~l~v~~E~~v~~av~~W~~~~~----~~~~~~~~ll~~i 87 (101)
T smart00875 19 KALRFILKNFLEVAQSEEFLELSLEQLLS---LLSSDDLNVPSEEEVFEAVLRWVKHDP----ERRRHLPELLSHV 87 (101)
T ss_pred HHHHHHHHHHHHHhcCcHHhcCCHHHHHH---HhCcccCCCCCHHHHHHHHHHHHHCCH----HHHHHHHHHHHhC
Confidence 33455566666677654 455444444 4444222 357889999999999876 3444566666543
Done!