BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007149
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/594 (56%), Positives = 439/594 (73%), Gaps = 21/594 (3%)
Query: 16 GMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVN 75
++ +E++T NA +Q +VL EIL+RN +TEYLK F L V + FK +PV+
Sbjct: 22 ALQFIEEMTRNADSVQERVLAEILSRNGETEYLK-RFKLE----GSTVRETFKSKIPVIK 76
Query: 76 YEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLI 135
YED++P I+RIANG+ S I+SA PI+EFLTSSGTS G+ K+MP+ E+L+R+ Y++L+
Sbjct: 77 YEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLM 136
Query: 136 PVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSP 195
PVMN YV LDKGK +Y LFVK E RTP GL+ARPVLTSYYKS F+ RP++ YNVYTSP
Sbjct: 137 PVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSP 196
Query: 196 DETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGH 255
+E ILC DS QSMY Q+LCG+ +R +VLR+GAVFAS LRAI+FL+ W +L +IR G
Sbjct: 197 NEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGT 256
Query: 256 VSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM 315
+S ITDPS RN V+ +L + + +LA+L+ EC ++WEGII +IWP TKY++VIVTG+M
Sbjct: 257 LSPKITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAM 315
Query: 316 AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKS 375
AQYIP L++YSGGLPL TMYASSECYFG+N P+ KPS+VSYT++PNMAYFEFLP E S
Sbjct: 316 AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHS 375
Query: 376 NGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTG 435
+ L+++ +VDL +V++G YELV+TT+ GLYRYRVGDIL VTG
Sbjct: 376 SIPLSRD-------------SPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDILRVTG 422
Query: 436 FHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSI 495
FHN+APQF FV RKNV+LSID+DKT+E +L KAV A L+ + + EYT++ADT +I
Sbjct: 423 FHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTI 482
Query: 496 PGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVK 555
PGHYV++WEL K S N +++ QCC +EESL+SVYR+ R DNSIGPLEIRVVK
Sbjct: 483 PGHYVIYWELLVKDSAN--SPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVK 540
Query: 556 DGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEP 609
GTF+ LMD+++S+G+S+NQYK PRC+ + LLDS+VV FS +P W P
Sbjct: 541 SGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTP 594
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/593 (56%), Positives = 433/593 (73%), Gaps = 30/593 (5%)
Query: 13 NEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVP 72
NE K L+DLT+N IQ +L+EI+T N KTEYL+ + I FD ++FKKNVP
Sbjct: 14 NETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFL---IDRFDK---ELFKKNVP 67
Query: 73 VVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYN 132
+V+YEDIKPY++R+ NGE SD+ISA+ IT FL SSGTSGG KMMP ++ L+ TF Y+
Sbjct: 68 IVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYD 127
Query: 133 MLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVY 192
+ + V+ K+V +++GK M LF K E TPSGL AR +SY+KS+ F+NRP N Y Y
Sbjct: 128 LRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSY 187
Query: 193 TSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIR 252
TSPDE ILCP++ +S+YC LLCGLVQRDEV+R G++FAS +RAI+ L++ W+ELCSNIR
Sbjct: 188 TSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIR 247
Query: 253 IGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVT 312
GH+S+W+TD C+N+VSL+LG +LA+ IE C SW+GI+K++WP TKYIE +VT
Sbjct: 248 SGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVT 307
Query: 313 GSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPV 372
GSM QY+P+L +Y LPLVST Y SSE FGIN PLCKP DVSYT +PNM+YFEF+P+
Sbjct: 308 GSMGQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPM 367
Query: 373 EKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILM 432
+ D+ ++VDL +VKLG YE VVT F GLYR RVGDI++
Sbjct: 368 DGG--------------------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVL 407
Query: 433 VTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADT 492
VTGF+NNAPQF FV R+NV+LSID+DKTNEEDL KAV++AKL++E G L ++T+YADT
Sbjct: 408 VTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADT 467
Query: 493 CSIPGHYVVFWELKSKGSNNLS----ELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGP 548
+ PGHYVV+ E+ +K ELD + + CC +EESLD+VY+RCR KD SIGP
Sbjct: 468 STFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGP 527
Query: 549 LEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFS 601
LEIRVV+ GTFD+LMDF +SQG+S QYKTPRCIKS +A+ +L++ VV +FFS
Sbjct: 528 LEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/593 (55%), Positives = 422/593 (71%), Gaps = 30/593 (5%)
Query: 13 NEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVP 72
NE K L+DLT+N IQ +L+EI+T N KTEYL+ + I FD ++FKKNVP
Sbjct: 14 NETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFL---IDRFDK---ELFKKNVP 67
Query: 73 VVNYEDIKPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYN 132
+V+YEDIKPY++R+ NGE SD+ISA+ IT FL SSGTSGG K P ++ L+ TF Y+
Sbjct: 68 IVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYD 127
Query: 133 MLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVY 192
+ V+ K+V +++GK LF K E TPSGL AR +SY+KS+ F+NRP N Y Y
Sbjct: 128 LRXQVITKHVKGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSY 187
Query: 193 TSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIR 252
TSPDE ILCP++ +S+YC LLCGLVQRDEV+R G++FAS +RAI+ L++ W+ELCSNIR
Sbjct: 188 TSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIR 247
Query: 253 IGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVT 312
GH+S+W+TD C+N+VSL+LG +LA+ IE C SW+GI+K++WP TKYIE +VT
Sbjct: 248 SGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVT 307
Query: 313 GSMAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPV 372
GS QY+P L +Y LPLVST Y SSE FGIN PLCKP DVSYT PN +YFEF+P
Sbjct: 308 GSXGQYVPXLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPX 367
Query: 373 EKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILM 432
+ D+ ++VDL +VKLG YE VVT F GLYR RVGDI++
Sbjct: 368 DGG--------------------DKNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVL 407
Query: 433 VTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADT 492
VTGF+NNAPQF FV R+NV+LSID+DKTNEEDL KAV++AKL++E G L ++T+YADT
Sbjct: 408 VTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADT 467
Query: 493 CSIPGHYVVFWELKSKGSNNLS----ELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGP 548
+ PGHYVV+ E+ +K ELD + + CC EESLD+VY+RCR KD SIGP
Sbjct: 468 STFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVXEESLDNVYKRCRFKDGSIGP 527
Query: 549 LEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFS 601
LEIRVV+ GTFD+L DF +SQG+S QYKTPRCIKS +A+ +L++ VV +FFS
Sbjct: 528 LEIRVVRQGTFDSLXDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/586 (36%), Positives = 329/586 (56%), Gaps = 34/586 (5%)
Query: 20 LEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDI 79
+++T NA+Q+Q Q LKEIL +N YL+ N + D + FK VP+V ++
Sbjct: 23 FDEMTRNAHQVQKQTLKEILLKNQSAIYLQ---NCGLNGNATDPEEAFKSMVPLVTDVEL 79
Query: 80 KPYIERIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMN 139
+PYI+R+ +G+ S I++ P+ SSGTS G+PK +P TDE +E + N
Sbjct: 80 EPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRN 139
Query: 140 KYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETI 199
+ D GKA+ +F + + G+ T+ Y++ +F+ + + SPDE I
Sbjct: 140 RDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVI 199
Query: 200 LCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDW 259
PD Q++YC LL G++ RD+V V AVFA + A + E W+E+ ++I+ G +S+
Sbjct: 200 FSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNR 259
Query: 260 ITDPSCRNAVSLILGRANQDLANLIENECGGES-WEGIIKKIWPRTKYIEVIVTGSMAQY 318
IT PS R A+S +L N +LA I +C S W G+I ++P KY+ I+TGSM Y
Sbjct: 260 ITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPY 318
Query: 319 IPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGE 378
+P L Y+G LPLVS Y SSE + N P P + ++ ++PN+ YFEFLPV ++ GE
Sbjct: 319 VPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET-GE 377
Query: 379 LTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHN 438
E + V LT VK+G YE+V+T + GLYRYR+GD++ V GF+N
Sbjct: 378 -----------------GEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYN 420
Query: 439 NAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGH 498
N PQ F+ R+N+ILSI+ DK E DL +V A + + ++++Y D + PGH
Sbjct: 421 NTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH 480
Query: 499 YVVFWELKSKGSNNLSELDTDIMEQCCSRVEES-LDSVYRRCRKKDNSIGPLEIRVVKDG 557
Y +FWE+ E + D+++ CC+ ++ + +D+ Y RK +IG LE+RVV G
Sbjct: 481 YAIFWEIS-------GETNEDVLQDCCNCLDRAFIDAGYVSSRKC-KTIGALELRVVAKG 532
Query: 558 TFDALMDFSVSQGSSVNQYKTPRCIKSEEA--INLLDSKVVGRFFS 601
TF + + + GSS Q+K PRC+K A + +L VV +FS
Sbjct: 533 TFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFS 578
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 436 FHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSI 495
+H+N+P+ FVH +++ + + N + LLKA +P+ FL + A +
Sbjct: 175 YHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGD---DPVVFLEPKILYRAPREEV 231
Query: 496 P-GHYVVFWELKSKGSNNLSELDTDI-MEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRV 553
P G YVV G ++ D+ + + V ++L++ R S+ ++++
Sbjct: 232 PEGDYVV-----EIGKARVAREGDDVTLVTYGAVVHKALEAAER----VKASVEVVDLQT 282
Query: 554 VKDGTFDALMDFSVSQGSSVNQYKTP---------RCIKSEEAINLLDSKVVGRFFSKRV 604
+ FD ++ G + + +P R + +E+A++ L + V+ R V
Sbjct: 283 LNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVI-RLAGPDV 341
Query: 605 P 605
P
Sbjct: 342 P 342
>pdb|3LC6|A Chain A, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LC6|B Chain B, The Alternative Conformation Structure Of Isocitrate
Dehydrogenase Kinase/phosphatase From E. Coli
pdb|3LCB|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli
Length = 578
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 224 RVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSD 258
R+G +F + A F DYW+ L + IR GHV D
Sbjct: 527 RIGPLFEE--MHADLFRADYWRALQNRIREGHVED 559
>pdb|3EPS|A Chain A, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
pdb|3EPS|B Chain B, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE From E. Coli
Length = 578
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 224 RVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSD 258
R+G +F + A F DYW+ L + IR GHV D
Sbjct: 527 RIGPLFEE--MHADLFRADYWRALQNRIREGHVED 559
>pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
pdb|1O4S|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1255)
From Thermotoga Maritima At 1.90 A Resolution
Length = 389
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 33/179 (18%)
Query: 136 PVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSNSFRNRPFNRYNVYTSP 195
PV+ + V L KG+ Y P G+ Y R RY SP
Sbjct: 58 PVVEEAVRFLQKGEVKYT--------DPRGI--------YELREGIAKRIGERYKKDISP 101
Query: 196 DETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGH 255
D+ ++ +KQ+++ + L DEV+ V+ S + I + +
Sbjct: 102 DQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQII----------LAGGTVNV 151
Query: 256 VSDWIT---DPSCRNAVSLILGRANQDLANLIENECG----GESWEGIIKKIWPRTKYI 307
V +++ PS L++G+ L N N G E EG+++ R YI
Sbjct: 152 VETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYI 210
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 363 NMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETE 399
N A + ++KSNG L + FQC+G +D+ H E
Sbjct: 154 NKASAVYQALQKSNGVLPELFQCHGTADELVLHSWAE 190
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 463 EDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIME 522
+D+ +AV A ++ LG ++ E + IP +YV+ S+ S+NLS D I
Sbjct: 274 DDVKEAVQNAVETLKSLGAVVEEVSLPNTKFGIPSYYVI---ASSEASSNLSRFD-GIRY 329
Query: 523 QCCSRVEESLDSVYRRCR 540
S+ SL+ +Y+ R
Sbjct: 330 GYHSKEAHSLEELYKMSR 347
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 361 LPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFT 420
LPN A+ F P+ K +GE ++ + CQ + + V + + +V F
Sbjct: 417 LPNGAHLFFSPIAKVSGE--DAMMQYAVTKKRCQEAGLDFIGTFTVGMREMHHIVCIVFN 474
Query: 421 --GLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILS---IDTDKTNEEDLLKAVTEAKLL 475
L + R LM T + A W +R ++ ++T N L+ K
Sbjct: 475 KKDLIQKRKVQWLMRTLIDDCAANGWGEYRSHLAFMDQIMETYNWNNSSFLRFNEVLKNA 534
Query: 476 IEPLGFL 482
++P G +
Sbjct: 535 VDPNGII 541
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,117,541
Number of Sequences: 62578
Number of extensions: 826018
Number of successful extensions: 1888
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1868
Number of HSP's gapped (non-prelim): 15
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)