Query 007149
Match_columns 616
No_of_seqs 194 out of 887
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 19:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 1E-137 2E-142 1148.2 55.7 588 10-612 18-607 (612)
2 PLN02247 indole-3-acetic acid- 100.0 6E-136 1E-140 1136.4 57.5 601 6-612 3-604 (606)
3 PLN02249 indole-3-acetic acid- 100.0 6E-127 1E-131 1072.5 56.3 575 12-612 19-596 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 3E-113 6E-118 958.5 43.7 517 16-589 2-528 (528)
5 COG1541 PaaK Coenzyme F390 syn 99.9 7.7E-25 1.7E-29 236.2 29.4 396 25-585 21-435 (438)
6 TIGR03335 F390_ftsA coenzyme F 99.9 1.4E-24 3E-29 239.3 23.8 395 25-562 12-432 (445)
7 TIGR02155 PA_CoA_ligase phenyl 99.9 8.7E-22 1.9E-26 214.7 25.5 387 25-560 6-409 (422)
8 TIGR02304 aden_form_hyp probab 99.8 5.3E-19 1.1E-23 193.8 27.1 318 25-503 22-375 (430)
9 COG1021 EntE Peptide arylation 99.4 4.6E-13 1E-17 141.3 9.4 134 303-471 303-458 (542)
10 PRK00174 acetyl-CoA synthetase 99.3 3.9E-09 8.5E-14 121.2 31.5 164 406-598 445-636 (637)
11 PTZ00237 acetyl-CoA synthetase 99.2 1.2E-09 2.7E-14 126.1 25.7 63 406-472 454-537 (647)
12 PRK07529 AMP-binding domain pr 99.2 1.7E-09 3.7E-14 124.4 26.3 134 306-471 334-489 (632)
13 PRK06334 long chain fatty acid 99.2 7.8E-10 1.7E-14 124.7 22.5 131 307-472 301-455 (539)
14 TIGR02188 Ac_CoA_lig_AcsA acet 99.2 1E-08 2.3E-13 117.4 31.9 160 406-593 436-624 (625)
15 PRK07514 malonyl-CoA synthase; 99.2 5.4E-09 1.2E-13 115.6 25.3 129 307-471 271-421 (504)
16 PRK05605 long-chain-fatty-acid 99.2 2.4E-09 5.3E-14 121.0 22.8 130 307-471 338-489 (573)
17 PRK06060 acyl-CoA synthetase; 99.2 3.9E-09 8.5E-14 122.8 25.0 131 306-472 261-410 (705)
18 PRK09274 peptide synthase; Pro 99.2 6.4E-09 1.4E-13 116.9 25.4 64 405-472 381-465 (552)
19 PLN02574 4-coumarate--CoA liga 99.1 7.8E-09 1.7E-13 116.8 25.2 132 307-471 321-474 (560)
20 PLN02654 acetate-CoA ligase 99.1 5.4E-08 1.2E-12 112.9 32.6 159 406-593 475-662 (666)
21 PRK10524 prpE propionyl-CoA sy 99.1 1.9E-08 4.1E-13 115.3 28.3 131 305-471 355-517 (629)
22 TIGR03205 pimA dicarboxylate-- 99.1 7.7E-09 1.7E-13 116.1 24.3 130 307-471 314-465 (541)
23 PRK13295 cyclohexanecarboxylat 99.1 5.5E-09 1.2E-13 117.6 22.8 128 307-471 314-463 (547)
24 PRK07788 acyl-CoA synthetase; 99.1 9.2E-09 2E-13 115.7 24.6 129 306-471 324-471 (549)
25 PRK03584 acetoacetyl-CoA synth 99.1 6.2E-08 1.3E-12 111.8 31.9 159 408-593 460-648 (655)
26 PRK06187 long-chain-fatty-acid 99.1 1.1E-08 2.5E-13 112.9 24.8 59 409-471 365-439 (521)
27 PRK04319 acetyl-CoA synthetase 99.1 1.2E-08 2.5E-13 115.6 25.3 129 307-472 325-477 (570)
28 PRK05677 long-chain-fatty-acid 99.1 3.6E-09 7.8E-14 119.5 21.0 129 306-471 327-477 (562)
29 PRK09088 acyl-CoA synthetase; 99.1 1.8E-08 3.8E-13 111.3 25.4 130 306-471 253-405 (488)
30 PRK04813 D-alanine--poly(phosp 99.1 1.4E-08 3.1E-13 111.9 24.1 62 406-472 339-420 (503)
31 PRK06155 crotonobetaine/carnit 99.1 2.6E-08 5.6E-13 112.3 26.3 128 307-471 296-444 (542)
32 PRK06164 acyl-CoA synthetase; 99.1 2E-08 4.4E-13 112.4 24.9 62 406-471 372-450 (540)
33 TIGR01734 D-ala-DACP-lig D-ala 99.1 2.9E-08 6.4E-13 109.7 25.4 62 406-472 337-418 (502)
34 TIGR02316 propion_prpE propion 99.1 4.6E-08 1E-12 112.4 27.9 62 406-471 432-516 (628)
35 PRK07656 long-chain-fatty-acid 99.1 2.1E-08 4.6E-13 110.8 23.3 62 406-471 358-436 (513)
36 TIGR01217 ac_ac_CoA_syn acetoa 99.1 6.2E-08 1.3E-12 112.1 27.9 158 408-593 461-646 (652)
37 PRK07786 long-chain-fatty-acid 99.0 6.4E-08 1.4E-12 108.8 27.0 129 307-471 292-443 (542)
38 PRK06145 acyl-CoA synthetase; 99.0 1.8E-08 3.9E-13 111.4 21.9 130 307-472 266-418 (497)
39 COG0365 Acs Acyl-coenzyme A sy 99.0 3.9E-08 8.4E-13 110.6 24.6 131 303-472 288-441 (528)
40 PRK07867 acyl-CoA synthetase; 99.0 6.1E-08 1.3E-12 109.1 25.7 139 307-471 269-425 (529)
41 PRK07638 acyl-CoA synthetase; 99.0 2E-08 4.3E-13 111.0 21.3 129 307-471 256-405 (487)
42 PRK07470 acyl-CoA synthetase; 99.0 5.1E-08 1.1E-12 108.9 24.6 62 406-471 361-438 (528)
43 PRK08974 long-chain-fatty-acid 99.0 1.8E-08 3.9E-13 113.6 21.1 128 307-471 327-476 (560)
44 PRK06839 acyl-CoA synthetase; 99.0 2.7E-08 5.8E-13 109.7 21.7 62 406-471 338-415 (496)
45 PLN02246 4-coumarate--CoA liga 99.0 3.8E-08 8.3E-13 110.4 23.1 131 306-471 299-456 (537)
46 PRK08314 long-chain-fatty-acid 99.0 9.1E-09 2E-13 115.3 17.8 63 406-472 379-461 (546)
47 PLN02860 o-succinylbenzoate-Co 99.0 1.6E-08 3.5E-13 114.4 19.8 60 408-471 382-458 (563)
48 TIGR01733 AA-adenyl-dom amino 99.0 1.6E-08 3.5E-13 108.3 18.7 62 406-471 313-399 (408)
49 TIGR03208 cyc_hxne_CoA_lg cycl 99.0 5.3E-08 1.1E-12 109.3 23.5 62 406-471 385-461 (538)
50 PRK08633 2-acyl-glycerophospho 99.0 4.2E-08 9.1E-13 119.5 24.3 64 405-472 981-1064(1146)
51 PLN02736 long-chain acyl-CoA s 99.0 1.4E-08 3.1E-13 117.2 18.4 132 307-471 378-532 (651)
52 PRK08316 acyl-CoA synthetase; 99.0 3.5E-08 7.6E-13 109.4 20.9 62 406-471 362-439 (523)
53 PRK05852 acyl-CoA synthetase; 99.0 7E-08 1.5E-12 108.2 23.3 130 307-471 297-452 (534)
54 PRK12583 acyl-CoA synthetase; 99.0 2E-07 4.3E-12 104.6 26.8 129 307-471 319-472 (558)
55 PRK07059 Long-chain-fatty-acid 99.0 8.4E-09 1.8E-13 116.2 15.6 129 306-471 328-479 (557)
56 PRK13383 acyl-CoA synthetase; 99.0 1.1E-07 2.3E-12 106.2 24.3 128 307-471 294-440 (516)
57 PRK12492 long-chain-fatty-acid 99.0 2.8E-07 6E-12 104.3 27.8 62 406-471 407-485 (562)
58 PLN02330 4-coumarate--CoA liga 99.0 8.5E-08 1.9E-12 107.9 23.3 128 307-471 305-461 (546)
59 TIGR03443 alpha_am_amid L-amin 98.9 1.2E-08 2.6E-13 127.2 17.5 43 425-471 680-722 (1389)
60 PRK13382 acyl-CoA synthetase; 98.9 2.4E-07 5.3E-12 104.2 26.3 128 307-471 314-460 (537)
61 TIGR02275 DHB_AMP_lig 2,3-dihy 98.9 9.6E-08 2.1E-12 106.9 22.8 130 306-471 300-452 (527)
62 PLN03051 acyl-activating enzym 98.9 4.2E-08 9.1E-13 109.4 19.9 44 424-471 358-401 (499)
63 PRK13388 acyl-CoA synthetase; 98.9 1.9E-07 4E-12 105.3 25.2 130 316-471 277-424 (540)
64 PTZ00342 acyl-CoA synthetase; 98.9 7.9E-08 1.7E-12 113.0 22.9 59 409-471 539-615 (746)
65 TIGR03098 ligase_PEP_1 acyl-Co 98.9 2.6E-07 5.7E-12 102.4 25.8 129 307-471 276-438 (515)
66 PLN02614 long-chain acyl-CoA s 98.9 6.4E-08 1.4E-12 112.4 21.5 62 406-471 463-541 (666)
67 PRK06710 long-chain-fatty-acid 98.9 6.5E-08 1.4E-12 109.2 21.1 130 307-472 325-476 (563)
68 PRK07768 long-chain-fatty-acid 98.9 4.2E-07 9.2E-12 102.1 27.4 63 406-472 381-459 (545)
69 PRK10946 entE enterobactin syn 98.9 3.8E-08 8.3E-13 110.6 18.5 62 406-471 375-453 (536)
70 PLN02387 long-chain-fatty-acid 98.9 1.1E-07 2.3E-12 111.0 22.7 132 307-471 422-580 (696)
71 COG0318 CaiC Acyl-CoA syntheta 98.9 3.2E-08 6.9E-13 111.9 17.1 130 307-472 293-446 (534)
72 KOG1176 Acyl-CoA synthetase [L 98.9 1.4E-07 3.1E-12 106.4 22.1 131 305-471 299-452 (537)
73 PRK12406 long-chain-fatty-acid 98.9 4.5E-07 9.7E-12 100.9 26.0 129 306-471 272-423 (509)
74 PRK08279 long-chain-acyl-CoA s 98.9 4.7E-08 1E-12 111.4 18.3 64 404-471 396-483 (600)
75 PRK10252 entF enterobactin syn 98.9 4.6E-08 1E-12 121.0 19.2 63 406-472 797-882 (1296)
76 PRK08751 putative long-chain f 98.9 7.5E-08 1.6E-12 108.5 19.3 63 406-472 403-482 (560)
77 PRK12467 peptide synthase; Pro 98.9 7E-08 1.5E-12 130.9 21.9 62 406-471 849-934 (3956)
78 PRK07787 acyl-CoA synthetase; 98.9 1.1E-07 2.4E-12 104.9 19.8 129 307-471 243-395 (471)
79 PRK08043 bifunctional acyl-[ac 98.9 4.1E-07 8.9E-12 106.4 24.9 44 425-472 593-636 (718)
80 PRK12467 peptide synthase; Pro 98.9 8.9E-08 1.9E-12 130.0 21.8 63 405-471 3429-3515(3956)
81 PRK07769 long-chain-fatty-acid 98.8 8.3E-08 1.8E-12 110.2 18.3 64 404-472 411-508 (631)
82 PRK08315 AMP-binding domain pr 98.8 5.5E-07 1.2E-11 101.3 24.3 62 406-471 393-471 (559)
83 TIGR01923 menE O-succinylbenzo 98.8 6.2E-07 1.3E-11 97.2 23.6 58 410-471 291-364 (436)
84 PRK05857 acyl-CoA synthetase; 98.8 8.2E-07 1.8E-11 100.1 25.3 63 405-471 368-446 (540)
85 PRK03640 O-succinylbenzoic aci 98.8 4.1E-07 8.8E-12 100.1 22.3 62 406-471 327-404 (483)
86 PLN02861 long-chain-fatty-acid 98.8 7.7E-08 1.7E-12 111.5 17.2 61 407-471 461-538 (660)
87 PRK06188 acyl-CoA synthetase; 98.8 5.8E-07 1.3E-11 100.4 23.5 62 406-471 360-437 (524)
88 PRK05851 long-chain-fatty-acid 98.8 1.3E-07 2.8E-12 106.1 18.1 62 406-472 367-440 (525)
89 PRK05850 acyl-CoA synthetase; 98.8 7.3E-07 1.6E-11 101.0 24.3 64 404-472 390-481 (578)
90 PRK08308 acyl-CoA synthetase; 98.8 6.6E-07 1.4E-11 97.2 22.4 58 408-471 278-335 (414)
91 PRK06087 short chain acyl-CoA 98.8 2E-07 4.3E-12 104.8 18.8 62 406-471 376-454 (547)
92 PRK07824 O-succinylbenzoic aci 98.8 1E-06 2.3E-11 93.6 23.3 44 424-472 235-278 (358)
93 PRK12316 peptide synthase; Pro 98.8 4E-08 8.7E-13 135.6 15.6 63 406-472 846-931 (5163)
94 PRK08276 long-chain-fatty-acid 98.8 1.2E-06 2.6E-11 97.2 24.4 129 304-471 261-413 (502)
95 PRK05620 long-chain-fatty-acid 98.8 8E-07 1.7E-11 100.8 23.5 43 425-471 432-474 (576)
96 COG1022 FAA1 Long-chain acyl-C 98.8 5.3E-08 1.2E-12 111.1 13.5 133 307-491 355-506 (613)
97 PRK09192 acyl-CoA synthetase; 98.8 2.1E-06 4.6E-11 97.6 25.9 63 405-472 405-483 (579)
98 TIGR02262 benz_CoA_lig benzoat 98.8 1.7E-06 3.7E-11 96.2 24.5 62 406-471 351-428 (508)
99 PRK12316 peptide synthase; Pro 98.7 4E-07 8.8E-12 126.0 23.2 63 405-471 2339-2425(5163)
100 PRK08008 caiC putative crotono 98.7 1.2E-06 2.7E-11 97.4 23.2 62 406-471 361-442 (517)
101 PLN03052 acetate--CoA ligase; 98.7 2.3E-06 4.9E-11 100.7 26.3 43 425-471 591-633 (728)
102 PRK06178 acyl-CoA synthetase; 98.7 1.1E-06 2.4E-11 99.3 22.5 62 406-471 409-486 (567)
103 PRK06814 acylglycerophosphoeth 98.7 4E-07 8.7E-12 111.5 20.1 60 408-471 978-1054(1140)
104 PLN02430 long-chain-fatty-acid 98.7 2.3E-07 5E-12 107.7 17.1 61 407-471 461-538 (660)
105 PLN03102 acyl-activating enzym 98.7 2.3E-07 5E-12 105.6 16.8 59 409-471 390-464 (579)
106 PRK05691 peptide synthase; Val 98.7 4.1E-07 8.9E-12 124.6 22.0 62 406-471 4061-4146(4334)
107 PRK07008 long-chain-fatty-acid 98.7 1.6E-06 3.5E-11 97.5 22.8 58 410-471 383-453 (539)
108 PRK05691 peptide synthase; Val 98.7 6.1E-07 1.3E-11 122.9 22.4 129 307-471 1390-1549(4334)
109 KOG1177 Long chain fatty acid 98.7 8.5E-08 1.8E-12 104.0 11.0 63 405-471 426-505 (596)
110 PF00501 AMP-binding: AMP-bind 98.7 2.1E-07 4.5E-12 100.3 14.0 119 301-456 276-417 (417)
111 PRK08180 feruloyl-CoA synthase 98.6 9E-07 1.9E-11 101.5 17.9 64 408-471 408-491 (614)
112 PRK12582 acyl-CoA synthetase; 98.6 1.1E-06 2.5E-11 100.9 17.7 60 407-466 419-496 (624)
113 PRK06018 putative acyl-CoA syn 98.6 4E-06 8.7E-11 94.3 21.7 58 410-471 383-454 (542)
114 KOG1175 Acyl-CoA synthetase [L 98.5 5.1E-06 1.1E-10 94.7 19.3 232 305-595 359-624 (626)
115 PRK07868 acyl-CoA synthetase; 98.5 3.4E-06 7.4E-11 102.4 17.4 144 306-471 721-880 (994)
116 PRK09029 O-succinylbenzoic aci 98.4 7.4E-06 1.6E-10 90.0 17.8 43 424-471 333-375 (458)
117 PRK13390 acyl-CoA synthetase; 98.4 1.1E-05 2.4E-10 89.5 18.2 62 406-471 343-423 (501)
118 PRK13391 acyl-CoA synthetase; 98.4 1.1E-05 2.4E-10 89.9 17.6 128 306-471 276-426 (511)
119 PRK07445 O-succinylbenzoic aci 98.4 5.6E-06 1.2E-10 91.7 14.9 60 408-471 298-368 (452)
120 TIGR02372 4_coum_CoA_lig 4-cou 98.3 1.8E-05 3.9E-10 86.4 16.4 43 425-471 277-319 (386)
121 PRK12476 putative fatty-acid-- 98.3 1.6E-05 3.4E-10 91.3 16.5 64 404-472 422-520 (612)
122 KOG1179 Very long-chain acyl-C 98.3 4.5E-05 9.8E-10 84.8 18.9 219 320-582 373-623 (649)
123 KOG1256 Long-chain acyl-CoA sy 98.2 2.4E-05 5.2E-10 89.5 15.0 135 299-471 416-572 (691)
124 PRK07798 acyl-CoA synthetase; 98.1 2.6E-05 5.6E-10 86.6 13.4 131 306-471 297-452 (533)
125 PTZ00216 acyl-CoA synthetase; 98.0 2.2E-05 4.8E-10 91.8 10.5 61 407-471 503-581 (700)
126 PRK08162 acyl-CoA synthetase; 97.9 0.00047 1E-08 77.5 17.7 57 411-471 388-460 (545)
127 PLN02479 acetate-CoA ligase 97.7 0.00019 4.2E-09 81.4 11.3 58 410-471 401-474 (567)
128 KOG1180 Acyl-CoA synthetase [L 97.6 0.0077 1.7E-07 67.4 20.3 146 307-493 404-574 (678)
129 PF04443 LuxE: Acyl-protein sy 97.4 0.0094 2E-07 64.8 18.8 79 29-125 31-115 (365)
130 PF14535 AMP-binding_C_2: AMP- 95.3 0.032 7E-07 48.9 5.4 84 457-561 1-84 (96)
131 COG1020 EntF Non-ribosomal pep 93.4 0.33 7.2E-06 56.0 9.7 62 406-471 562-640 (642)
132 PRK09188 serine/threonine prot 85.7 1.1 2.3E-05 49.0 5.0 38 425-471 211-251 (365)
133 PRK07445 O-succinylbenzoic aci 61.4 7.5 0.00016 43.1 3.5 25 99-124 121-145 (452)
134 KOG1178 Non-ribosomal peptide 55.7 8.9 0.00019 47.2 3.0 44 425-472 456-499 (1032)
135 PRK12476 putative fatty-acid-- 44.5 14 0.0003 42.6 2.2 26 99-125 194-219 (612)
136 PTZ00216 acyl-CoA synthetase; 43.9 18 0.00038 42.7 3.0 28 98-126 264-291 (700)
137 PRK07798 acyl-CoA synthetase; 37.9 17 0.00036 40.4 1.5 23 102-125 167-189 (533)
138 PLN02479 acetate-CoA ligase 36.5 20 0.00044 40.7 1.9 22 102-124 199-220 (567)
139 cd04931 ACT_PAH ACT domain of 33.1 1.9E+02 0.0041 25.2 7.0 40 462-506 25-64 (90)
140 PF07311 Dodecin: Dodecin; In 32.6 1.4E+02 0.003 24.7 5.7 49 458-507 13-62 (66)
141 PTZ00189 60S ribosomal protein 31.6 33 0.00072 33.1 2.2 36 422-457 31-69 (160)
142 PF11454 DUF3016: Protein of u 31.2 1.1E+02 0.0023 29.1 5.5 56 406-463 47-112 (141)
143 cd04866 LigD_Pol_like_3 LigD_P 30.7 43 0.00092 34.2 2.9 50 94-144 121-172 (223)
144 PRK08162 acyl-CoA synthetase; 30.6 26 0.00056 39.3 1.6 23 101-124 185-207 (545)
145 TIGR02778 ligD_pol DNA polymer 28.8 41 0.00089 34.8 2.5 50 94-144 142-192 (245)
146 PF07037 DUF1323: Putative tra 26.6 90 0.002 28.8 3.9 51 4-55 70-120 (122)
147 PLN00190 60S ribosomal protein 26.6 46 0.00099 32.2 2.2 36 422-457 31-69 (158)
148 cd04865 LigD_Pol_like_2 LigD_P 25.8 49 0.0011 33.9 2.4 50 94-144 127-177 (228)
149 COG2139 RPL21A Ribosomal prote 25.3 52 0.0011 29.2 2.1 37 422-458 30-69 (98)
150 COG0077 PheA Prephenate dehydr 25.0 4.5E+02 0.0097 27.9 9.3 70 433-507 167-245 (279)
151 cd04861 LigD_Pol_like LigD_Pol 24.9 46 0.001 34.1 2.0 50 94-144 126-176 (227)
152 PRK11899 prephenate dehydratas 24.6 5.2E+02 0.011 27.2 9.9 40 462-506 205-244 (279)
153 PF09926 DUF2158: Uncharacteri 24.6 71 0.0015 25.2 2.5 19 425-446 1-19 (53)
154 PRK04306 50S ribosomal protein 23.4 62 0.0014 28.8 2.3 36 422-457 32-70 (98)
155 PF01797 Y1_Tnp: Transposase I 22.8 5.2E+02 0.011 22.6 10.5 103 444-566 7-118 (121)
156 PRK11898 prephenate dehydratas 22.6 5.4E+02 0.012 27.1 9.5 40 462-506 208-247 (283)
157 cd04862 PaeLigD_Pol_like PaeLi 22.5 46 0.00099 34.1 1.4 50 94-144 126-176 (227)
158 PRK13390 acyl-CoA synthetase; 21.9 45 0.00097 36.9 1.4 34 307-342 272-308 (501)
159 cd04863 MtLigD_Pol_like MtLigD 21.6 49 0.0011 34.0 1.4 50 94-144 130-180 (231)
160 COG5475 Uncharacterized small 21.3 1E+02 0.0022 24.7 2.8 24 425-451 5-28 (60)
161 PTZ00297 pantothenate kinase; 20.7 78 0.0017 40.9 3.2 54 411-471 825-881 (1452)
162 PF13933 HRXXH: Putative pepti 20.1 2.5E+02 0.0054 29.1 6.1 69 12-99 51-121 (245)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=1e-137 Score=1148.16 Aligned_cols=588 Identities=59% Similarity=1.042 Sum_probs=549.9
Q ss_pred CCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcC
Q 007149 10 PNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANG 89 (616)
Q Consensus 10 ~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~G 89 (616)
..+|++.++.+|+.++||.++|+++|++||++|++|+|||+ |||+ +|+++++ ||++|||++|||++|||+||++|
T Consensus 18 ~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~-~~f~-~i~~~~~---F~~~VPv~~Yedl~pyI~Ri~~G 92 (612)
T PLN02620 18 AEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQR-HGLN-GRTDRET---FKKVMPVITYEDIQPDINRIANG 92 (612)
T ss_pred ccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHh-cCCC-CCCCHHH---HHHhCCCccHHHhHHHHHHHHcC
Confidence 45568889999999999999999999999999999999999 9999 9999999 99999999999999999999999
Q ss_pred CCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceee
Q 007149 90 EPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMAR 169 (616)
Q Consensus 90 e~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G 169 (616)
|.++|||++||.+|++|||||||++|+||+|+++++.++.++.+|..++++.+|++..||.||+++.+.+.+|++|||+|
T Consensus 93 e~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~Gip~g 172 (612)
T PLN02620 93 DTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVAR 172 (612)
T ss_pred CCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecccCccCCCCcccc
Confidence 98899999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHH
Q 007149 170 PVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCS 249 (616)
Q Consensus 170 ~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~ 249 (616)
++|+.+++|..|++++..+...|++|.++++++|..|+|||||||||.++++|..|+++|+++|+.++++|+++|++||+
T Consensus 173 ~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~ 252 (612)
T PLN02620 173 PVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCR 252 (612)
T ss_pred cccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhhcCCC
Q 007149 250 NIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGL 329 (616)
Q Consensus 250 dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~~~ 329 (616)
||++|+++++++++++|.++.+.|+ |||++|+.|+.+|.+.+|.|++++|||||++|+||++|+|++|++.|++|+||+
T Consensus 253 DI~~G~ls~~itd~~~R~av~~~L~-p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~ggl 331 (612)
T PLN02620 253 DIRTGTIDSQITDPSVREAVMKILK-PDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGL 331 (612)
T ss_pred HHhcCCCCccCCCHHHHHHHHhhcC-CCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999999997 999999999999999889999999999999999999999999999999999999
Q ss_pred CeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCC--CCCCCCCCcceeeccccC
Q 007149 330 PLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGIS--DQDCQHDETEIVDLTNVK 407 (616)
Q Consensus 330 ~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~l~ev~ 407 (616)
|+++.+|+||||+||||++|.|+|++.+|+|+|+++||||||+++.+... ++++ +..+..+++++|+++|||
T Consensus 332 pl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~------~~~~~~~~~~~~~~~~~v~l~ev~ 405 (612)
T PLN02620 332 PLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVT------NSISLPKSLNEKEQQELVDLVDVK 405 (612)
T ss_pred ccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCccccc------ccccccccccccccCccccHHHcc
Confidence 99999999999999999999999999999999999999999988633100 0000 000002336799999999
Q ss_pred CCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEE
Q 007149 408 LGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYT 487 (616)
Q Consensus 408 ~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~ 487 (616)
+|++|||||||++||||||+||||+|+||||++|+|+|++|.+.++|++|||++|++|..||.+|.+.+.+.++.|+||+
T Consensus 406 ~G~~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~dyt 485 (612)
T PLN02620 406 LGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDASLTEYT 485 (612)
T ss_pred CCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCceeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999987766789999999
Q ss_pred EeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHHHHH
Q 007149 488 AYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSV 567 (616)
Q Consensus 488 ~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~~~~ 567 (616)
+++|.++.||||+||||+...+. ..++++.+++||..||++||++|+.+|..+++|||++|++|++|||++++++++
T Consensus 486 s~~d~~~~PghYvl~~El~~~~~---~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~ 562 (612)
T PLN02620 486 SYADTSTIPGHYVLFWELCLNGS---TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAI 562 (612)
T ss_pred eccccCCCCCceEEEEEEecCCC---CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHH
Confidence 99998899999999999953222 135778999999999999999999999766579999999999999999999999
Q ss_pred hcCCCCCCccCCcccCCHHHHHHHhcccceeeeccCCCCCccCCc
Q 007149 568 SQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGI 612 (616)
Q Consensus 568 ~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 612 (616)
++|++.||||+|||+++++++++|+++|+++|||+++|+|.|+.+
T Consensus 563 ~~G~s~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~~~~~~~~~~ 607 (612)
T PLN02620 563 SLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVPGHK 607 (612)
T ss_pred HcCCccccccCceEecCHHHHHHHHhhhheeeccccCCCCCcccc
Confidence 999999999999999999999999999999999999999999854
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=5.9e-136 Score=1136.39 Aligned_cols=601 Identities=83% Similarity=1.326 Sum_probs=551.9
Q ss_pred CCCCCCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHH
Q 007149 6 PHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIER 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieR 85 (616)
|.|+..+|++.++.+|+.++||.++|+++|++||++|++|+|||+ | +. +|.+.++ ||++|||++|||++|||+|
T Consensus 3 ~~~~~~~~~~~~~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~-~-~~-~i~~~e~---Fk~~VPv~~Yedl~pyI~R 76 (606)
T PLN02247 3 PSYDPNDNEAGLKLLEDLTTNACQIQQQVLEEILTQNAGTEYLRS-F-LD-GESDKQS---FKNKVPVVNYEDIKPCIER 76 (606)
T ss_pred CccCCcchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhhhh-c-Cc-cCCCHHH---HHHhCCCccHHHhHHHHHH
Confidence 678999999999999999999999999999999999999999988 7 55 7999999 9999999999999999999
Q ss_pred HHcCCCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCC
Q 007149 86 IANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSG 165 (616)
Q Consensus 86 i~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~G 165 (616)
|++||.+++++++||.+|++|||||||++|+||+|+++++++.+++++|...+++..|++..||.||+++.+++.+|++|
T Consensus 77 i~~Ge~~~llt~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~l~~~~~~~~~p~l~~Gk~~~~~~~~~~~~T~~G 156 (606)
T PLN02247 77 IANGESSSIISAQPITELLTSSGTSGGQPKLMPSTAEELDRKTFFYNLLVPVMNKYVDGLDQGKGMYLLFIKPEISTPSG 156 (606)
T ss_pred HHcCCCCceeCCCCcceeeccCCCCCCceeEeeccHHHHHHHHHHHHHHHHHHHhcCCCcccCcEEEEEecCcCccCCCC
Confidence 99999867788999999999999998899999999999999999999999999998899999999999999999999999
Q ss_pred ceeeeccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHH
Q 007149 166 LMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK 245 (616)
Q Consensus 166 i~~G~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~ 245 (616)
+|+|++++.++++..|+.++..+...|++|.++++++|.+|+|||||||||.+++++..|+++|++++++++++|+++|+
T Consensus 157 ip~g~~~t~y~~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~we 236 (606)
T PLN02247 157 LMARPVLTSYYKSSNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWK 236 (606)
T ss_pred cccccccchhhccccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHHHH
Confidence 99999999999999999888776678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhh
Q 007149 246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFY 325 (616)
Q Consensus 246 el~~dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~ 325 (616)
+||+||++|+++++++++++|.++...|.+|||++|+.|+.+|.+.+|.|++++|||||++|+||++|+|++|++.|++|
T Consensus 237 ~L~~DI~~G~ls~~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~~~w~gi~~rLWP~lk~I~~~~tGsm~~Y~~~L~~y 316 (606)
T PLN02247 237 ELCSNIRTGCVSDWITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGIIKRLWPRTKYIEVIVTGSMAQYIPTLEFY 316 (606)
T ss_pred HHHHHHhcCCcccccCCHHHHHHHhhcccCCCHHHHHHHHHHhcccCccccHHHhCCCCcEEEEECCCCHHHHHHHHHHH
Confidence 99999999999999999999999999996699999999999999888999999999999999999999999999999999
Q ss_pred cCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCC-CCCCCCcceeecc
Q 007149 326 SGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQ-DCQHDETEIVDLT 404 (616)
Q Consensus 326 ~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~l~ 404 (616)
+||+|+++.+|+||||+||||++|.|+|++.+|+|+|+++||||||+++.+.+..+.+.|++-+.+ +...+++++|+++
T Consensus 317 ~gglpl~s~~Y~sSE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 396 (606)
T PLN02247 317 SGGLPLVSTMYASSECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLV 396 (606)
T ss_pred cCCCceecccccccceEEEeccCcCCCccCCceeecCCcEEEEEeecCCCcccccccccccccccccccccccCceecHH
Confidence 999999999999999999999999999999999999999999999988643211111222221111 1112235699999
Q ss_pred ccCCCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEE
Q 007149 405 NVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLT 484 (616)
Q Consensus 405 ev~~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~ 484 (616)
|||+|++|||||||++||||||+||||+|+||||++|+|+|+||.+.++|++|||++|+++..||.+|.+.+++.++.+.
T Consensus 397 evk~G~~YelVvTt~~GLYRYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a~~~l~~~~~~l~ 476 (606)
T PLN02247 397 DVKVGHYYELVVTTFTGLYRYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEPLGFLLT 476 (606)
T ss_pred HccCCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHHHHhhcccCeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987766689999
Q ss_pred eEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHH
Q 007149 485 EYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMD 564 (616)
Q Consensus 485 ~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~ 564 (616)
||+.++|.++.||||+||||++..+..+....+.+.+++||..||++||++|+.+|..+|+|||++|++|++|||+++++
T Consensus 477 d~ts~~d~~~~PghYvlf~El~~~~~~~~~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~~igPLeirvv~~GtF~~l~~ 556 (606)
T PLN02247 477 EYTSYADTSSIPGHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESLDSVYRRCRKRDKSIGPLEIRVVKHGTFDALMD 556 (606)
T ss_pred eeecccccCCCCCceEEEEEeecCCCCccccchHHHHHHHHHHHHHHhhHHHHHHhhccCcCCCcEEEEeCCChHHHHHH
Confidence 99999998889999999999963221111134567899999999999999999999765799999999999999999999
Q ss_pred HHHhcCCCCCCccCCcccCCHHHHHHHhcccceeeeccCCCCCccCCc
Q 007149 565 FSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGI 612 (616)
Q Consensus 565 ~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 612 (616)
+++++|++.||||+|||+++++++++|+++|+++|||+++|.|.|+..
T Consensus 557 ~~~~~G~s~~Q~K~Pr~v~~~~~~~~l~~~v~~~~~s~~~~~~~~~~~ 604 (606)
T PLN02247 557 FCVSQGSSVNQYKTPRCIKSEEALKILDSRVIGRFFSKRVPFWEPFGM 604 (606)
T ss_pred HHHHcCCCcccccCceEecCHHHHHHHHhhhheeeccccCCCCCcccC
Confidence 999999999999999999999999999999999999999999999753
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=5.6e-127 Score=1072.46 Aligned_cols=575 Identities=57% Similarity=0.981 Sum_probs=531.6
Q ss_pred CcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCC
Q 007149 12 DNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEP 91 (616)
Q Consensus 12 ~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~ 91 (616)
++++.++.+|+.++||.++|+++|++||++|++|+|||+ |||+ +|.+.++ ||++|||++|||++|||+||++||.
T Consensus 19 ~~~~~l~~~e~~t~~~~~~Q~~vL~~iL~~n~~Teyg~~-~gf~-~i~~~~~---F~~~VPv~~Yedl~pyIeRi~~Ge~ 93 (597)
T PLN02249 19 KDVKALKFIEEMTRNPDSVQEKVLGEILSRNSNTEYLKR-FDLN-GAVDRKT---FKSKVPVVTYEDLKTEIQRISNGDR 93 (597)
T ss_pred cHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHh-cCCC-CCCCHHH---HHHhCCCccHHHhHHHHHHHHcCCC
Confidence 347789999999999999999999999999999999999 9999 9999999 9999999999999999999999998
Q ss_pred CccccCcccceeecccccCCCCCccccCChHHHH--HHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceee
Q 007149 92 SDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLE--RKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMAR 169 (616)
Q Consensus 92 ~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~--~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G 169 (616)
++|||++||.+|++|||||+|++|+||+|+++++ .+.++..+| ..+...|+++.||.|++++.+.+.+|++|+|+|
T Consensus 94 ~~vL~~~pi~~f~~SSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~--~~~~~~~~l~~Gk~l~~~~~~~~~~t~gG~p~~ 171 (597)
T PLN02249 94 SPILSSHPITEFLTSSGTSAGERKLMPTIEEDIDRRQLLGSLLMP--VMNLYVPGLDKGKGLYFLFVKSESKTSGGLPAR 171 (597)
T ss_pred CceeCCCchhhhcccCCCCCCceeEEeccHHHHHHHHHHHHHHHH--HHhccCCccccCcEEEEEeccccccCCCCCccC
Confidence 7799999999999999999999999999999998 455666666 333347889999999999888899999999999
Q ss_pred eccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHH
Q 007149 170 PVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCS 249 (616)
Q Consensus 170 ~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~ 249 (616)
++++.++++..|+.++. ...|++|.+++.++|.++++||||||||.+++++..|++.||+.++.++++|+++|++||+
T Consensus 172 ~~~~~~~~~~~f~~~~~--~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~~l~~~weel~~ 249 (597)
T PLN02249 172 PALTSYYKSDHFRTSDY--DNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAISFLQNNWKELAQ 249 (597)
T ss_pred ccccccccccccccccc--cccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHHHHHHHHHHHHH
Confidence 99998778777777653 6689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhhcCCC
Q 007149 250 NIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGL 329 (616)
Q Consensus 250 dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~~~ 329 (616)
||++|+++++++++++|..+..++..|+|++|++++++|++.+|+|++++|||||++|+||++|+|++|++.|++++|++
T Consensus 250 dI~~g~~~~~~~~~~~~~~v~~i~g~P~~~la~~i~~~~~~~~~~gii~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~ 329 (597)
T PLN02249 250 DISTGTLSSKIFDPAIKNRMSKILNKPDQELAEFLIGVCSQENWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGL 329 (597)
T ss_pred HHHhCCCcccccchHHHHHHHhhcCCCCHHHHHHHHHHhccccccccHHHhCCCCCeEEEEecCChHHHHHHHHHHcCCC
Confidence 99999999999999999999998877999999999999988779999999999999999999999999999999999999
Q ss_pred CeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCC
Q 007149 330 PLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLG 409 (616)
Q Consensus 330 ~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G 409 (616)
++++++|+||||+||+|+++.|++++.+|+|+|+.+||||||.++.+.. ..+++++|+++|||+|
T Consensus 330 ~~~~~~Y~ASEg~~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~~---------------~~~~~~~v~l~eVe~G 394 (597)
T PLN02249 330 PMASTIYASSESYFGINLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGDG---------------ALDETSLVELADVEVG 394 (597)
T ss_pred ccccccccccceEEEeecCCCCCCCCcceEecCCcEEEEeeecccCCcc---------------cCCCCcEecHHHcCCC
Confidence 9999999999999999999999989999999999999999998753210 0134689999999999
Q ss_pred ceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEe
Q 007149 410 HCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAY 489 (616)
Q Consensus 410 ~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~ 489 (616)
++|||||||++|||||++||+|+|+||||++|+|+|+||+++++|++|||++|+++++||.+|.+.+++.|+.|.||+++
T Consensus 395 ~~Y~lVvTT~~GLyRY~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~a~~~~~~~~~~v~eft~~ 474 (597)
T PLN02249 395 KEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRLLAEQGTRVIEYTSY 474 (597)
T ss_pred CeEEEEEEcccceeEeecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHHHHHHhhhcCceEEEeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999887777789999999998
Q ss_pred ecCCCCCceEEEEEEEe-ecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHHHHHh
Q 007149 490 ADTCSIPGHYVVFWELK-SKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSVS 568 (616)
Q Consensus 490 ~~~~~~~~~Y~l~~ele-~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~~~~~ 568 (616)
++..+.|+||+||||++ + +.. ....+.+.+++||+.++++||.+|+++|.++|+|+||+|++|++|+|.+|++++++
T Consensus 475 ~~~~~~p~Hyvl~wei~~~-~~~-~~~~~~~~~~~~~~~~e~~ln~~Y~~~R~~~~~L~pl~v~vv~~GtF~~~~~~~~~ 552 (597)
T PLN02249 475 AETKTIPGHYVIYWELLGR-DQS-NALPSDEVMAKCCLEMEESLNSVYRQSRVSDKSIGPLEIRVVQNGTFEELMDYAIS 552 (597)
T ss_pred cCCCCCCCceEEEEEEecc-ccc-cCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCeEEEEeCCchHHHHHHHHHh
Confidence 88877799999999994 3 210 00256788999999999999999999997766999999999999999999999999
Q ss_pred cCCCCCCccCCcccCCHHHHHHHhcccceeeeccCCCCCccCCc
Q 007149 569 QGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGI 612 (616)
Q Consensus 569 ~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 612 (616)
+|+++||||+|||+++++++++|+++|+++|+|+++|+|.|+.+
T Consensus 553 ~G~~~gQ~K~Prl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 596 (597)
T PLN02249 553 RGSSINQYKVPRCVSLTPIMELLDSRVVSAHFSPSLPHWSPERR 596 (597)
T ss_pred CCCcCCCcCCceEeCCHHHHHHHHhhhheeeccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999753
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=2.7e-113 Score=958.46 Aligned_cols=517 Identities=38% Similarity=0.664 Sum_probs=409.9
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCccc
Q 007149 16 GMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDII 95 (616)
Q Consensus 16 ~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL 95 (616)
.+++|++.++||+++|+++|++||+.|++|+|||+ |||+ +|.++|| +.||++|||++||||+|||+||++||. +||
T Consensus 2 ~l~~f~~~~~~~~~~Q~~~L~~iL~~n~~T~yGr~-~gf~-~i~s~ed-~~Fr~~VPi~~Yed~~pyIeR~~~Ge~-~vL 77 (528)
T PF03321_consen 2 VLKRFEKATKNPEQVQEEVLREILRRNADTEYGRD-HGFA-GIRSVED-ESFRKRVPITDYEDYRPYIERIAEGEE-NVL 77 (528)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCTTSHHHHC-TT---S----HH-HHHHHHS--BEHHHHHHHHHHHHTT---CCT
T ss_pred hHHHHHHHHhCHHHHHHHHHHHHHHhhccCHhHHh-cCCC-CCCCcch-HHHHHhCCCccHHHHHHHHHHHhcCCC-CCC
Confidence 47899999999999999999999999999999999 9999 9998775 369999999999999999999999997 699
Q ss_pred cCcccceeecccccCCCCCccccCChHHHHHHH--HHHHHHHHHHhhcCCCC-CCCcEEEEE--ecCCCccCCCCceeee
Q 007149 96 SAQPITEFLTSSGTSGGQPKMMPSTDEDLERKT--FFYNMLIPVMNKYVDDL-DKGKAMYLL--FVKPEIRTPSGLMARP 170 (616)
Q Consensus 96 ~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~--~~~~~~~~~~~~~~p~~-~~gk~L~~~--~~~~~~~t~~Gi~~G~ 170 (616)
|++|+.+|+.||||||+++|+||+|++++..+. .+..+|..++.+++|.. +.||.+++. +.+...+|++|+|+|+
T Consensus 78 ~~~~~~~f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~~p~~~~~gk~~~l~~~~~~~~~~t~~Gi~~g~ 157 (528)
T PF03321_consen 78 TPGPPIYFALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRNFPGLLFQGKSLYLSFSFAPPPLRTPGGIPIGS 157 (528)
T ss_dssp SSS--SEEEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHHSSS--TTSE--EEEE------EE-TTS-EEE-
T ss_pred CCCCCCeEEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCcccccCCcceEEEeecCCCcccCCCCeEEec
Confidence 999999999999999555999999999998866 77788888899999987 679955544 3467788999999999
Q ss_pred ccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHHH
Q 007149 171 VLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSN 250 (616)
Q Consensus 171 ~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~d 250 (616)
+|++.+++ .+......|++|.+++.+.|..+++||||||+|.+++||+.|+++|+++|+.++++|+++|+++|+|
T Consensus 158 ~s~~~~~~-----~~~~~~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~l~~d 232 (528)
T PF03321_consen 158 ISGIPYRM-----IPPWFRSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEELVED 232 (528)
T ss_dssp HHHHHHT-------SCCHHG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhh-----ChHHHccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhHhhHH
Confidence 99987752 2222235899999999999999999999999999889999999999999999999999999999999
Q ss_pred HHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhhcCCCC
Q 007149 251 IRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGLP 330 (616)
Q Consensus 251 I~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~~~~ 330 (616)
|++|+++ .+. |||+||++|+++|.++ +|++++|||||++|.||++|+|.+|+++|++++|+++
T Consensus 233 I~~G~~~--------------~~~-p~p~rA~~L~~~~~~~--~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~ 295 (528)
T PF03321_consen 233 IRDGTLS--------------LLR-PNPERAAELRAEFEKG--RGIPKRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVP 295 (528)
T ss_dssp HHHTS----------------C-S---HHHHHHHHHHHCCS--TTHHHHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-
T ss_pred hcCCccc--------------cCC-CCHHHHHHHHHhhccc--CCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCc
Confidence 9999998 244 9999999999999996 8999999999999999999999999999999999999
Q ss_pred eeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCc
Q 007149 331 LVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGH 410 (616)
Q Consensus 331 ~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~ 410 (616)
+++.+|+||||+||+|+++ +..+|+|+|+.+||||||+++.+++ ..+++++++++||++|+
T Consensus 296 ~~~~~y~ASEg~i~i~~~~----~~~~~~l~~~~~ffEFip~~~~~~~---------------~~~~~~~l~~~ele~G~ 356 (528)
T PF03321_consen 296 IQSKGYGASEGFIGIPLDP----EDPGYVLAPDSGFFEFIPVDEDEQN---------------PSEQPKTLLLHELEVGE 356 (528)
T ss_dssp EEE-EEEETTEEEEEES-C----CC--EEE-TTSSEEEEEE-STT----------------------SSSEEGGG--TT-
T ss_pred eeeccccccceEEEEecCC----CCCceEeecCCeEEEEEeccCCccc---------------ccCCCceecHHHhcCCC
Confidence 9999999999999999884 5679999999999999999875410 02347899999999999
Q ss_pred eeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEee
Q 007149 411 CYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYA 490 (616)
Q Consensus 411 ~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~ 490 (616)
+|||||||.+||||||+||||+|+||++++|+|+|+||.++++|++|||++|++|.+||.++++ +.|+.+.+|++.+
T Consensus 357 ~YelviTt~~GLyRY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~---~~~~~~~~f~~~~ 433 (528)
T PF03321_consen 357 EYELVITTNSGLYRYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQ---ETGLELRDFTVAP 433 (528)
T ss_dssp EEEEEEESTTS-SSEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHH---CTT-EEEEEEEEE
T ss_pred eEEEEEecccceeeeecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHH---hcCCceeeEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999864 5899999999999
Q ss_pred c-CCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhh---ChHHHHhhccCCccCCeEEEEcCCCcHHHHHHHH
Q 007149 491 D-TCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESL---DSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFS 566 (616)
Q Consensus 491 ~-~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~L---n~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~~~ 566 (616)
+ .++.+|||++|||++. . ++.++.|++.||++| |++|+.+|..+|+|+||+|++|++|+|++|++++
T Consensus 434 ~~~~~~~~~Y~~~~e~~~-------~--~~~~~~~~~~lD~~L~~~n~~Y~~~R~~~g~L~p~~v~~v~~g~f~~~~~~~ 504 (528)
T PF03321_consen 434 DPSSGNPPHYVLFWELEG-------E--PDDLEELAKALDESLQELNPHYRRARESDGQLGPPRVHIVRPGTFDALMERA 504 (528)
T ss_dssp E--SSSSBEEEEEEEECS----------HHHHHHHHHHHHHCS----HHHHHHHHTSTSC---EEEEE-TTHHHHHHHHH
T ss_pred ecccCCCCceEEEEEeCC-------C--chHHHHHHHHHHHHhhhCCchHHHHHhhcCCcCCcEEEEeCcchHHHHHHHH
Confidence 8 6789999999999962 2 557889999999999 9999999955379999999999999999999999
Q ss_pred Hhc-CCCCCCccCCcccCCHHHHH
Q 007149 567 VSQ-GSSVNQYKTPRCIKSEEAIN 589 (616)
Q Consensus 567 ~~~-G~~~~Q~K~Pr~~~~~~~~~ 589 (616)
+++ |++.+|||+|||++++++.+
T Consensus 505 ~~~~G~~~~Q~K~pr~~~~~~~~~ 528 (528)
T PF03321_consen 505 VARLGGSAGQYKVPRLIRDREFVE 528 (528)
T ss_dssp HCT-T--SSS----SS--TCHHHH
T ss_pred hhcCCCCccceeCccccCccccCC
Confidence 998 99999999999999998853
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.94 E-value=7.7e-25 Score=236.19 Aligned_cols=396 Identities=17% Similarity=0.212 Sum_probs=250.6
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChhhhhhc---CCC-CCCCChhhHHhhhhcCCCccccchhHHHH-HHHcCCCCccccCc
Q 007149 25 TNAYQIQLQVLKEILTR-NAKTEYLKGYF---NLN-IGHFDVDVLQVFKKNVPVVNYEDIKPYIE-RIANGEPSDIISAQ 98 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~~---gf~-~~i~~~ed~~~f~~~vPi~~Yed~~~yie-Ri~~Ge~~~lL~~~ 98 (616)
+..++.|++.|+.+++. .++++|||+++ |+. ..|++.+| +. ++|+++++++|.... ++.+.. .+
T Consensus 21 ~eL~~lq~~rl~~~~k~~yeNsPfYr~~f~~~~v~p~~i~~l~D---l~-klP~t~K~~lre~ypf~~~~~~------~~ 90 (438)
T COG1541 21 KELEKLQEKRLKSTVKYVYENSPFYRKKFKEAGVDPDDIKTLED---LA-KLPFTTKDDLRENYPFGDFAVP------KE 90 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCChHHhhCHHH---HH-hCCCCcHHHHHHhCCccccccc------cc
Confidence 45889999999999995 99999999943 444 47889999 95 899999999988765 554443 34
Q ss_pred ccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceeeecccccccc
Q 007149 99 PITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKS 178 (616)
Q Consensus 99 pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G~~S~~~~~~ 178 (616)
.+.++..||||| |+|+.+|+|..........+ ...+. .-+...|..+...++ .+...+|+ +.
T Consensus 91 ~i~~ihaSSGTT-GkPt~~~~t~~D~~~wa~~~--aR~~~---~~g~~~gd~v~~~~~--yGl~tgg~------~~---- 152 (438)
T COG1541 91 EIVRIHASSGTT-GKPTVFGYTAKDIERWAELL--ARSLY---SAGVRKGDKVQNAYG--YGLFTGGL------GL---- 152 (438)
T ss_pred ceEEEEccCCCC-CCceeeecCHHHHHHHHHHH--HHHHH---HccCCCCCEEEEEee--eccccCCc------hh----
Confidence 466799999999 89999999999875432211 11111 123444543333322 11111220 00
Q ss_pred ccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007149 179 NSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSD 258 (616)
Q Consensus 179 ~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~dI~~Gti~~ 258 (616)
+|..-.+++ .+...++.. -+.-++.|.+
T Consensus 153 -----------------------------~~ga~rig~-------~vip~~~g~-----------~~~~~~l~~d----- 180 (438)
T COG1541 153 -----------------------------HYGAERIGA-------TVIPISGGN-----------TERQLELMKD----- 180 (438)
T ss_pred -----------------------------HHHHHhhCE-------EEEccCCcc-----------HHHHHHHHHh-----
Confidence 011010111 111111111 1111122222
Q ss_pred CCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccc---hhchHHHHHhhcCCCCeeecc
Q 007149 259 WITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGS---MAQYIPILEFYSGGLPLVSTM 335 (616)
Q Consensus 259 ~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~---~~~y~~~l~~~~~~~~~~~~~ 335 (616)
..+.+ +. ..|.-+..|.+...+. |+.++ .++ +...+.|+ .+..++.+++.+ |++.+ +.
T Consensus 181 ------f~~tv---I~-~tps~~l~lae~~~~~---G~~~~---~~~-lk~~i~gaE~~see~R~~ie~~~-g~~~~-di 241 (438)
T COG1541 181 ------FKPTV---IA-ATPSYLLYLAEEAEEE---GIDPD---KLS-LKKGIFGAEPWSEEMRKVIENRF-GCKAF-DI 241 (438)
T ss_pred ------cCCcE---EE-EChHHHHHHHHHHHHc---CCChh---hcc-eeEEEEecccCCHHHHHHHHHHh-CCcee-ec
Confidence 22221 22 4666666666666554 32211 222 55666775 378889999999 88887 99
Q ss_pred ccccccce-eecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEE
Q 007149 336 YASSECYF-GINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYEL 414 (616)
Q Consensus 336 y~asE~~~-~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yel 414 (616)
||+||++. | ...|.. ..++|++.++-|+|-+++++.+ . |..|++|||
T Consensus 242 YGltE~~g~g---~~eC~~-~~glhi~eD~~~~Ei~dP~t~e-----------------------~-----l~dge~Gel 289 (438)
T COG1541 242 YGLTEGFGPG---AGECTE-RNGLHIWEDHFIFEIVDPETGE-----------------------Q-----LPDGERGEL 289 (438)
T ss_pred cccccccCCc---cccccc-ccCCCcchhhceeeeecCCcCc-----------------------c-----CCCCCeeEE
Confidence 99999954 4 246754 4489999999999999987632 2 478999999
Q ss_pred EEccc--cc--eeccccCCEEEEeccc----CCCC-eEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEe
Q 007149 415 VVTTF--TG--LYRYRVGDILMVTGFH----NNAP-QFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTE 485 (616)
Q Consensus 415 VvTt~--~G--lyRYr~GDvv~v~gf~----~~~P-~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~ 485 (616)
|+||+ .| |.||||||++.+.... +..+ ..++.||.+||+.+.|.++.+.+|+.+|.+... +.- +
T Consensus 290 V~T~L~~~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~------~~~-~ 362 (438)
T COG1541 290 VITTLTKEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPE------VTP-H 362 (438)
T ss_pred EEEeccccCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccC------CCc-e
Confidence 99986 23 9999999999999732 2233 348999999999999999999999999977432 111 8
Q ss_pred EEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHHH
Q 007149 486 YTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDF 565 (616)
Q Consensus 486 f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~~ 565 (616)
|.+.....+.-....|-+|++.+ . .......++++.+...+ .... .+ .++|.+|.+|+.++.
T Consensus 363 yqi~~~~~~~~d~L~V~vE~~~~-~-----~~~~~~~~~~~~l~~~~-------~~~~-~~-~~~v~~v~~g~l~r~--- 424 (438)
T COG1541 363 YQIILTRNGGLDELTVRVELENE-A-----EELEDERRLAKKLIKNI-------KSEL-GV-RVEVELVEPGELPRT--- 424 (438)
T ss_pred EEEEEecCCCCceEEEEEEecCc-c-----cchHHHHHHHHHHHHHH-------Hhhc-CC-ceEEEEEeccceecc---
Confidence 88877653344566677777521 1 11223333334444444 2222 34 789999999998855
Q ss_pred HHhcCCCCCCccCCcccCCH
Q 007149 566 SVSQGSSVNQYKTPRCIKSE 585 (616)
Q Consensus 566 ~~~~G~~~~Q~K~Pr~~~~~ 585 (616)
.| |.+|++..+
T Consensus 425 ---~~------K~krvvd~r 435 (438)
T COG1541 425 ---EG------KAKRVVDKR 435 (438)
T ss_pred ---cC------ceeEEEEec
Confidence 22 777877544
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.93 E-value=1.4e-24 Score=239.27 Aligned_cols=395 Identities=15% Similarity=0.115 Sum_probs=221.5
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChhhhhhc---CCC-CCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCccc--cC
Q 007149 25 TNAYQIQLQVLKEILTR-NAKTEYLKGYF---NLN-IGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDII--SA 97 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~~---gf~-~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL--~~ 97 (616)
...++.|.+.|+++|+. .++++|||+++ |++ .+|++.+| |+ ++|+++++|++..-.-. .+.=.++ ..
T Consensus 12 ~~l~~~q~~rl~~~l~~a~~~spfYr~~~~~~g~~p~~i~sl~d---l~-~lP~~~k~~lr~~~p~~--~~~~~~~~~~~ 85 (445)
T TIGR03335 12 GELDALVEERIRYTVHYAAEHSPFYKKWFQENNISPSDIKSHED---LL-ELPVISGEVIRKNQPPV--TDDFMFKSADW 85 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHH---HH-HCCCCCHHHHHhcCCcc--ccccccccCCH
Confidence 45789999999999996 67899999943 665 37899999 95 79999999998753100 0100112 22
Q ss_pred cccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceeeeccccccc
Q 007149 98 QPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYK 177 (616)
Q Consensus 98 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G~~S~~~~~ 177 (616)
+.+..+..||||| |+||.+++|...+......... .+. .-++..|..+...+ + . |.-.| ..
T Consensus 86 ~~i~~i~~TSGTT-G~Pk~v~~T~~dl~~~~~~~~r--~~~---~~G~~~gD~vl~~~-~-~-----~~~~g----~~-- 146 (445)
T TIGR03335 86 KDIYTIHETSGTS-GTPKSFFLTWDDWKRYAEKYAR--SFV---SQGFTAGDRMVICA-S-Y-----GMNVG----AN-- 146 (445)
T ss_pred HHeEEEEeCCCCC-CCcceeeecHHHHHHHHHHHHH--HHH---HcCCCCCCeEEEEe-c-C-----Ccchh----HH--
Confidence 3455677899999 8999999999876543221110 010 11233342222221 1 0 10000 00
Q ss_pred cccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007149 178 SNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVS 257 (616)
Q Consensus 178 ~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~dI~~Gti~ 257 (616)
...+..+.+|. ..+.. ... . ..++.|++-
T Consensus 147 ----------------------------~~~~~~~~~Ga------~vi~~---~~~-------~----~~~~~i~~~--- 175 (445)
T TIGR03335 147 ----------------------------TMTLAAREVGM------SIIPE---GKC-------T----FPIRIIESY--- 175 (445)
T ss_pred ----------------------------HHHHHHHHcCC------EEEcC---Cch-------h----HHHHHHHHh---
Confidence 00000011110 00100 000 0 112223321
Q ss_pred CCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccch---hchHHHHHhhcCCCCeeec
Q 007149 258 DWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVST 334 (616)
Q Consensus 258 ~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~ 334 (616)
++.. +. +.|..+..|.+.+.+. |+-.. .++ +..++.|+. ...++.+++.+ |++++ +
T Consensus 176 --------~~t~---l~-~~ps~ll~La~~~~~~---g~~~~-~~~---lr~ii~gGE~l~~~~r~~ie~~~-g~~v~-~ 234 (445)
T TIGR03335 176 --------RPTG---IV-ASVFKLLRLARRMKAE---GIDPA-ESS---IRRLVVGGESFADESRNYVEELW-GCEVY-N 234 (445)
T ss_pred --------CCCE---EE-ECHHHHHHHHHHHHHc---CCCcc-cCc---ceEEEEcCCCCCHHHHHHHHHHh-CCcEE-e
Confidence 1110 11 3444433444333332 22111 234 555666653 44567788888 79998 8
Q ss_pred cccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEE
Q 007149 335 MYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYEL 414 (616)
Q Consensus 335 ~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yel 414 (616)
.||+||+.++ ..|. ...+||+..+..++|.++++.. ++ |++|+.+||
T Consensus 235 ~YG~TE~~~~----~~c~-~~~g~h~~~d~~~vEIvDp~~~-----------------------~~-----vp~Ge~GEL 281 (445)
T TIGR03335 235 TYGSTEGTMC----GECQ-AVAGLHVPEDLVHLDVYDPRHQ-----------------------RF-----LPDGECGRI 281 (445)
T ss_pred cCChhhhhhe----EEec-CCCCccccCCceEEEEEcCCCC-----------------------CC-----CcCCCceEE
Confidence 9999998543 2443 3457998888889999986531 22 368999999
Q ss_pred EEcccc--------ceeccccCCEEEEe-ccc----CCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCC
Q 007149 415 VVTTFT--------GLYRYRVGDILMVT-GFH----NNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGF 481 (616)
Q Consensus 415 VvTt~~--------GlyRYr~GDvv~v~-gf~----~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~ 481 (616)
|+||+. -|.||||||++++. .-. ...|+|..+||.+||+.++|.++++.+|+++|.+.... .++
T Consensus 282 vvT~L~~~~~r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~---~~~ 358 (445)
T TIGR03335 282 VLTTLLKPGERCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENM---DSL 358 (445)
T ss_pred EEEecCCCCccCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCC---CCC
Confidence 999872 28999999999974 211 22367888899999999999999999999999773100 110
Q ss_pred EEEeEEEeecCCC-CCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhc--cCCccCCeEEEEcCCCc
Q 007149 482 LLTEYTAYADTCS-IPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRK--KDNSIGPLEIRVVKDGT 558 (616)
Q Consensus 482 ~l~~f~~~~~~~~-~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~--~~g~l~p~~v~~v~~Gt 558 (616)
-.+|.+..+... ....-.|-+|.. .. . ....+++.+.+.+.+...++..+. +.+.+ .++|.+|++|+
T Consensus 359 -~~~~~~~~~~~~~~~~~~~v~~e~~--~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 428 (445)
T TIGR03335 359 -TGEYEAFLYGEEEGEITLRVSLECE--DK-----D-NCSIHDIQENFTGTFLKYKPELIGSYDEGIF-QILVNFTGPGE 428 (445)
T ss_pred -CccEEEEEecCCCCCceEEEEEEec--Cc-----c-cchHHHHHHHHHHHHhhhhhhhhhhhhcceE-EEEEEEeCCCC
Confidence 126877664321 122333444442 11 1 122334444455442111222110 12246 57999999999
Q ss_pred HHHH
Q 007149 559 FDAL 562 (616)
Q Consensus 559 F~~~ 562 (616)
+++.
T Consensus 429 ~~~~ 432 (445)
T TIGR03335 429 LELH 432 (445)
T ss_pred cccc
Confidence 9743
No 7
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.89 E-value=8.7e-22 Score=214.73 Aligned_cols=387 Identities=16% Similarity=0.163 Sum_probs=218.6
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChhhhhhc---CCC-CCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCccc--cC
Q 007149 25 TNAYQIQLQVLKEILTR-NAKTEYLKGYF---NLN-IGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDII--SA 97 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~~---gf~-~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL--~~ 97 (616)
.+.++.|.+.|+++|+. .++++|||++| |++ .+|.+.+| |+ ++|++++++++..... .++ ..
T Consensus 6 ~~l~~~q~~~l~~~~~~a~~~~pfYr~~~~~~~i~~~~i~~~~d---l~-~lP~~~K~~l~~~~~~-------~~~~~~~ 74 (422)
T TIGR02155 6 DELRALQTQRLKWTVKHAYENVPHYRKAFDAAGVHPDDLQSLSD---LA-KFPFTQKHDLRDNYPF-------GLFAVPR 74 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHH---HH-HCCCCcHHHHhhcCCC-------cccCCCh
Confidence 45788999999999996 67899999843 554 37888999 95 7999999999865421 122 22
Q ss_pred cccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceeeeccccccc
Q 007149 98 QPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYK 177 (616)
Q Consensus 98 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G~~S~~~~~ 177 (616)
+.+.++..||||| |+||.+++|...+......... .. .+-++..|..+...+ ......+|..
T Consensus 75 ~~~~~~~~TSGTT-G~Pk~v~~t~~~~~~~~~~~~~---~~--~~~g~~~~d~~~~~~--~~~~~~~~~~---------- 136 (422)
T TIGR02155 75 EQVVRIHASSGTT-GKPTVVGYTQNDIDTWSSVVAR---SI--RAAGGRPGDLIHNAY--GYGLFTGGLG---------- 136 (422)
T ss_pred HHcEEEEECCCCC-CCCeEeccCHHHHHHHHHHHHH---HH--HHcCCCCCcEEEEcc--CccccchhHH----------
Confidence 3344666899999 8999999999876432221100 00 011222232222110 0000000100
Q ss_pred cccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007149 178 SNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVS 257 (616)
Q Consensus 178 ~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~dI~~Gti~ 257 (616)
..|..+.++. ..+. +... .-+.+++.|.+-
T Consensus 137 -----------------------------~~~~~~~~g~------~~~~--~~~~----------~~~~~~~~i~~~--- 166 (422)
T TIGR02155 137 -----------------------------AHYGAEKLGC------TVVP--ISGG----------QTEKQVQLIQDF--- 166 (422)
T ss_pred -----------------------------HHHHHHHcCc------EEEe--cCCC----------CHHHHHHHHHHH---
Confidence 0011111111 0000 0000 012333444441
Q ss_pred CCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccch---hchHHHHHhhcCCCCeeec
Q 007149 258 DWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVST 334 (616)
Q Consensus 258 ~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~ 334 (616)
++.+ +. ..|..+..|.+...+. |+- +....+..+++||. ...++.+++.+ |++++ +
T Consensus 167 --------~~t~---l~-~~Ps~l~~L~~~~~~~---~~~----~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~-~ 225 (422)
T TIGR02155 167 --------KPDI---IM-VTPSYMLNLLEELKRM---GID----PAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKAT-D 225 (422)
T ss_pred --------CCCE---EE-EcHHHHHHHHHHHHHc---CCC----cccCceEEEEEeCCcCCHHHHHHHHHHh-CCceE-e
Confidence 1111 11 3555555544433221 111 11123556666653 45667788888 68888 8
Q ss_pred cccccccc-eeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeE
Q 007149 335 MYASSECY-FGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYE 413 (616)
Q Consensus 335 ~y~asE~~-~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~ye 413 (616)
.||+||+. .++. ..|.....++++..+..+.|.+++++. ++ |.+|+.+|
T Consensus 226 ~YG~tE~~~~~~~--~~~~~~~~g~~~~~~~~~~eivd~~~g-----------------------~~-----v~~Ge~Ge 275 (422)
T TIGR02155 226 IYGLSEVIGPGVA--MECVETQDGLHIWEDHFYPEIIDPHTG-----------------------EV-----LPDGEEGE 275 (422)
T ss_pred cccchhhcCCcee--ecccccCCCceEecCeeEEEEECCCCC-----------------------CC-----CCCCCeeE
Confidence 99999973 1221 234223457887766778888865431 22 36899999
Q ss_pred EEEccccc----eeccccCCEEEEeccc-CCCCe-EEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEE
Q 007149 414 LVVTTFTG----LYRYRVGDILMVTGFH-NNAPQ-FWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYT 487 (616)
Q Consensus 414 lVvTt~~G----lyRYr~GDvv~v~gf~-~~~P~-i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~ 487 (616)
||+|+... +.||+|||++++..-. +..|+ +.|+||.+|++++.|+++++.+|+.+|.+.. ++. ..|.
T Consensus 276 lvvt~~~~~~~p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~------~v~-~~~q 348 (422)
T TIGR02155 276 LVFTTLTKEALPVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMD------ELS-PHYQ 348 (422)
T ss_pred EEEecCCccccceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCc------CcC-CCEE
Confidence 99997432 6799999999986410 22343 4799999999999999999999999997632 211 1455
Q ss_pred EeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHH
Q 007149 488 AYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFD 560 (616)
Q Consensus 488 ~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~ 560 (616)
+..+..+.+...++++|... +.. .....+..+.+.+.|.+.+ |... .+ .++|.++..|++.
T Consensus 349 ~~~~~~~~~~~~~~~v~~~~-~~~--~~~~~~~~~~~~~~i~~~~-------~~~~-~~-~~~v~~~~~~~lp 409 (422)
T TIGR02155 349 LELTRNGHMDELTLKVELKP-ESY--TLRLHEQASLLAGEIQHTI-------KQEV-GV-SMDVHLVEPGSLP 409 (422)
T ss_pred EEEEcCCCccEEEEEEEEec-Ccc--cccchHHHHHHHHHHHHHH-------Hhcc-Cc-EEEEEEECCCCcc
Confidence 55443322335667777642 110 0111223333445555555 4333 23 3689999999987
No 8
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=99.84 E-value=5.3e-19 Score=193.80 Aligned_cols=318 Identities=14% Similarity=0.191 Sum_probs=200.2
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcCC-------------
Q 007149 25 TNAYQIQLQVLKEILTR-NAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGE------------- 90 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge------------- 90 (616)
...++.|++.|+++|+. .++++|||+ + . ++ + ++ ++|++++++++...+++....
T Consensus 22 ~~l~~~Q~~rL~~ll~~a~~~sPfYr~-~--~-~~----~---l~-~lPvl~K~~~~~~fd~~~t~~l~~~~~~~~a~~~ 89 (430)
T TIGR02304 22 EALENWQAKQLEKFLQFVLSHSPWFQR-Y--H-TI----P---FN-QWPMMDKALMMEHFDELNTAGLKKDEALDCAMRS 89 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhh-c--c-CC----C---HH-HCCCcCHHHHHHHHHHhhccCCChhhhhHHhhhh
Confidence 35788999999999996 689999999 6 2 33 4 63 699999999999999887321
Q ss_pred -CCccccC--cccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCC-CCCCC-cEEEEEecCCCccCCCC
Q 007149 91 -PSDIISA--QPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVD-DLDKG-KAMYLLFVKPEIRTPSG 165 (616)
Q Consensus 91 -~~~lL~~--~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p-~~~~g-k~L~~~~~~~~~~t~~G 165 (616)
.+..+.+ +.+ ....||||| |+|-.|.++++......+ . .+.+..| ++..| |...+..+...
T Consensus 90 e~~r~f~~~~~~~-~v~~TSGSS-G~p~~f~~~~~~~~~~~a-~-----~~~~~~~~g~~~g~r~a~~~~~~~~------ 155 (430)
T TIGR02304 90 EKTRDFKPCVGNI-SVGLSSGTS-GRRGLFVVSPEEQQMWAG-G-----ILAKVLPDGLFAKHRIAFFLRADNN------ 155 (430)
T ss_pred hhhcccccccCcE-EEEECCCCC-CCceEEEECHHHHHHHHH-H-----HHhhhCccccccCCcEEEEEccChh------
Confidence 0011111 344 566799999 899999999986532211 1 1222333 44443 55554212110
Q ss_pred ceeeeccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHH
Q 007149 166 LMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK 245 (616)
Q Consensus 166 i~~G~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~ 245 (616)
.+. .+.++. +. +..+++. +.++
T Consensus 156 ---------ly~--~~~~~~------------------------------------~~----------~~~~~l~-~~~~ 177 (430)
T TIGR02304 156 ---------LYQ--SVNNRW------------------------------------IS----------LDFFDLL-APFQ 177 (430)
T ss_pred ---------HHH--HHHhcc------------------------------------ce----------eeecCCC-cCHH
Confidence 000 000000 00 0112222 4467
Q ss_pred HHHHHHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccch---hchHHHH
Q 007149 246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM---AQYIPIL 322 (616)
Q Consensus 246 el~~dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~---~~y~~~l 322 (616)
+.++.|.+ .+|.+ |. ++|.-+.+|.+...++ |+ ++ . +..+++++. ...++.+
T Consensus 178 ~~l~~L~~-----------~~P~~---L~-g~pS~l~~LA~~~~~~---~l--~~--~---~k~ii~~~E~l~~~~r~~I 232 (430)
T TIGR02304 178 AHIKRLNQ-----------RKPSI---IV-APPSVLRALALEVMEG---EL--TI--K---PKKVISVAEVLEPQDRELI 232 (430)
T ss_pred HHHHHHHH-----------hCCCE---EE-EcHHHHHHHHHHHHhc---CC--CC--C---ceEEEEccCCCCHHHHHHH
Confidence 77777776 55554 44 7888888888876654 22 22 2 334455543 5566788
Q ss_pred HhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceee
Q 007149 323 EFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVD 402 (616)
Q Consensus 323 ~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (616)
++.| |++++ +.||+|||++| ..|. ..+||+.++..|+|+..+++.
T Consensus 233 e~~f-g~~V~-~~YG~tEg~la----~eC~--~g~lHl~ed~~~vE~~ivD~~--------------------------- 277 (430)
T TIGR02304 233 RNVF-KNTVH-QIYQATEGFLA----STCR--CGTLHLNEDLVHIEKQYLDEH--------------------------- 277 (430)
T ss_pred HHHh-CCCee-EccCCchhheE----EecC--CCCEEEccccEEEEeeEECCC---------------------------
Confidence 9999 79988 89999998776 4663 457999999999995222210
Q ss_pred ccccCCCceeEEEEccccc----eeccccCCEEEEeccc----CCCCeE-EEEeecCceeec---cceec--CHHHHHHH
Q 007149 403 LTNVKLGHCYELVVTTFTG----LYRYRVGDILMVTGFH----NNAPQF-WFVHRKNVILSI---DTDKT--NEEDLLKA 468 (616)
Q Consensus 403 l~ev~~G~~yelVvTt~~G----lyRYr~GDvv~v~gf~----~~~P~i-~f~gR~~~~l~~---~gek~--~e~~v~~a 468 (616)
| .++.|||++.. |.||+|||++++..-. +..|+| ++.||.+|++.+ +|.++ ++..+..+
T Consensus 278 ------~-~~~~ViT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~ 350 (430)
T TIGR02304 278 ------K-RFVPIITDFTRTTQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRV 350 (430)
T ss_pred ------C-ceEEEEecCCCccceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHH
Confidence 1 13349998743 9999999999886432 123577 499999999976 45554 88888877
Q ss_pred HHHHHhhccccCCEEEeEEEeecCCCCCceEEEEE
Q 007149 469 VTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFW 503 (616)
Q Consensus 469 v~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ 503 (616)
+.... .+ +.+|.+... .+.+.+|.+
T Consensus 351 i~~~~-----~~--i~~yQi~Q~---~~~~l~v~~ 375 (430)
T TIGR02304 351 ILFTL-----PL--IVEYRVLQT---GSAQLELIA 375 (430)
T ss_pred HHhcC-----CC--CceEEEEEc---cCCeEEEEE
Confidence 65432 22 458887654 355665444
No 9
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.41 E-value=4.6e-13 Score=141.26 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=95.8
Q ss_pred CCceEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 303 RTKYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 303 ~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.|+++..+--|++ +.-+++++..+ ||.++ ..+|..||.+.+. ...+|.+. +..+++ -|....++
T Consensus 303 ~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQ-QVFGMAEGLvnyT--RLDDp~E~---i~~TQG----rPlsP~DE-- 369 (542)
T COG1021 303 DLSSLRLLQVGGARLSATLARRVPAVL-GCQLQ-QVFGMAEGLVNYT--RLDDPPEI---IIHTQG----RPLSPDDE-- 369 (542)
T ss_pred CchheeEEeecCcccCHHHHhhchhhh-CchHH-HHhhhhhhhhccc--ccCCchHh---eeecCC----CcCCCcce--
Confidence 4455666666764 45567777777 88888 8999999987653 22222211 111222 23222111
Q ss_pred cchhhcCCCCCCCCCCCCcceeec--cccCCCceeEEEEc---cccceec--------------cccCCEEEEecccCCC
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDL--TNVKLGHCYELVVT---TFTGLYR--------------YRVGDILMVTGFHNNA 440 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l--~ev~~G~~yelVvT---t~~GlyR--------------Yr~GDvv~v~gf~~~~ 440 (616)
-.+++. .+|.+||.++|... |+.|+|| ||+||+|+.+ ..
T Consensus 370 ------------------vrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~----~d 427 (542)
T COG1021 370 ------------------VRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRD----PD 427 (542)
T ss_pred ------------------eEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEec----CC
Confidence 123332 34789999999985 8999999 9999999999 47
Q ss_pred CeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 441 PQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 441 P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
..+.+.||.||.||.+||||-.+|||+.+..
T Consensus 428 Gyl~V~GR~KDQINRgGEKIAAeEvEn~LL~ 458 (542)
T COG1021 428 GYLVVEGRVKDQINRGGEKIAAEEVENLLLR 458 (542)
T ss_pred ceEEEEeeehhhhccccchhhHHHHHHHHhh
Confidence 7999999999999999999999999999876
No 10
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=99.27 E-value=3.9e-09 Score=121.23 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=96.1
Q ss_pred cCCCceeEEEEccc-----ccee----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 406 VKLGHCYELVVTTF-----TGLY----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 406 v~~G~~yelVvTt~-----~Gly----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
+..|+.+||+|+.. .|+| .|+|||++++.. ...+.|+||.++++++.|+++.+.+
T Consensus 445 ~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~~~GR~dd~ik~~G~~v~p~e 520 (637)
T PRK00174 445 LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDE----DGYYWITGRVDDVLNVSGHRLGTAE 520 (637)
T ss_pred CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcC----CCcEEEEEecccEEEeCCEEECHHH
Confidence 46799999999851 2221 299999999873 5689999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCEEEeEEEeec-CCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccC
Q 007149 465 LLKAVTEAKLLIEPLGFLLTEYTAYAD-TCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKD 543 (616)
Q Consensus 465 v~~av~~a~~~~~~~g~~l~~f~~~~~-~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~ 543 (616)
|+.+|.+. .+ |.+..+... .......-+.|+.+.. +. ..+.+..+++.+.+.+.|. .|
T Consensus 521 IE~~l~~~------~~--V~~~~Vvg~~~~~~g~~~~a~vv~~~-~~----~~~~~~~~~l~~~l~~~l~-~~------- 579 (637)
T PRK00174 521 IESALVAH------PK--VAEAAVVGRPDDIKGQGIYAFVTLKG-GE----EPSDELRKELRNWVRKEIG-PI------- 579 (637)
T ss_pred HHHHHHhC------CC--cceEEEEeeEcCCCCeEEEEEEEECC-CC----CCCHHHHHHHHHHHHhhcC-Cc-------
Confidence 99999753 22 334444321 1111123345666542 21 2222333444444444441 11
Q ss_pred CccCCeEEEEc------CCCcHHHHHHHHHhcCCCCCCccCCcccCCHHHHHHHhccccee
Q 007149 544 NSIGPLEIRVV------KDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGR 598 (616)
Q Consensus 544 g~l~p~~v~~v------~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~ 598 (616)
..|-.+.+| +.|-..+-.=....+|.. +.+-+.-+.|++.++.+.+.+-++
T Consensus 580 --~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 636 (637)
T PRK00174 580 --AKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE--ILGDTSTLADPSVVEKLIEARQNR 636 (637)
T ss_pred --cCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC--CCCCcccccCHHHHHHHHHHHhhc
Confidence 224455554 234433321111223332 456667788999999988765543
No 11
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=99.25 E-value=1.2e-09 Score=126.06 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=54.0
Q ss_pred cCCCceeEEEEcc------ccceec---------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 406 VKLGHCYELVVTT------FTGLYR---------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 406 v~~G~~yelVvTt------~~GlyR---------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
|..|+.+||+++. ..|+|+ |+|||+.+++. ...+.|+||.+|+|++.|+++++.+
T Consensus 454 ~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~----dG~l~i~GR~dd~i~~~G~rI~p~e 529 (647)
T PTZ00237 454 LNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDE----NGYYTIVSRSDDQIKISGNKVQLNT 529 (647)
T ss_pred CCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECC----CCeEEEEeccCCEEEECCEEeCHHH
Confidence 5679999999973 355652 89999999973 5689999999999999999999999
Q ss_pred HHHHHHHH
Q 007149 465 LLKAVTEA 472 (616)
Q Consensus 465 v~~av~~a 472 (616)
||++|.+.
T Consensus 530 IE~~l~~~ 537 (647)
T PTZ00237 530 IETSILKH 537 (647)
T ss_pred HHHHHHhC
Confidence 99999763
No 12
>PRK07529 AMP-binding domain protein; Validated
Probab=99.24 E-value=1.7e-09 Score=124.40 Aligned_cols=134 Identities=15% Similarity=0.260 Sum_probs=88.5
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+..+++|+. ....+.+++.+ |++++ ++||+||+.......+.. .+...+.. +|.. -+.++..++..
T Consensus 334 slr~v~~gg~~l~~~l~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~~svG~~-~p~~-~v~i~~~d~~g--- 406 (632)
T PRK07529 334 SLRYALCGAAPLPVEVFRRFEAAT-GVRIV-EGYGLTEATCVSSVNPPDGERRIGSVGLR-LPYQ-RVRVVILDDAG--- 406 (632)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHh-CCcEe-eeecccccCcccccCCccccccCCCcccc-cCCc-eEEEEEcCCCC---
Confidence 4667777764 44556666667 78988 999999985433222111 01112222 2222 23444433211
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeE
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i 443 (616)
. ...++..|+.+||+|+. +.|++ -|+|||+.++.. ...+
T Consensus 407 -------------------~--~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~----dG~l 461 (632)
T PRK07529 407 -------------------R--YLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDA----DGYF 461 (632)
T ss_pred -------------------c--ccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcC----CceE
Confidence 0 01235789999999975 34432 289999999973 5689
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|+||.+++++++|+++++.+|+.+|.+
T Consensus 462 ~i~GR~~d~i~~~G~~i~p~eIE~~l~~ 489 (632)
T PRK07529 462 WLTGRAKDLIIRGGHNIDPAAIEEALLR 489 (632)
T ss_pred EEEecccCEEEeCCEEECHHHHHHHHHh
Confidence 9999999999999999999999999976
No 13
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=99.23 E-value=7.8e-10 Score=124.66 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=85.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC---CCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK---PSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++||. ....+.+++.+++++++ ..||+||+...+...+... +...+. ..|+.. +..++.+.
T Consensus 301 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~g~~-v~i~d~~~------ 371 (539)
T PRK06334 301 LRFVVIGGDAFKDSLYQEALKTFPHIQLR-QGYGTTECSPVITINTVNSPKHESCVGM-PIRGMD-VLIVSEET------ 371 (539)
T ss_pred ccEEEECCccCCHHHHHHHHHHCCCCeEE-ecccccccCceEEeccCCCCCCCCcCce-ecCCCE-EEEEcCCC------
Confidence 566667764 44566777778788888 8999999843221111100 011122 122211 11121110
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee---------------ccccCCEEEEecccCCCCe
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY---------------RYRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly---------------RYr~GDvv~v~gf~~~~P~ 442 (616)
. ..|..|+.+||+|.. +.|+| -|+|||++++.. ...
T Consensus 372 -----------------~-----~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~----~G~ 425 (539)
T PRK06334 372 -----------------K-----VPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR----HGE 425 (539)
T ss_pred -----------------C-----ccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC----CCe
Confidence 1 135789999999964 34443 399999999873 568
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+.|+||.+++++++|+++++.+||.+|.+.
T Consensus 426 l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~ 455 (539)
T PRK06334 426 LFLKGRLSRFVKIGAEMVSLEALESILMEG 455 (539)
T ss_pred EEEEeccCCeEEECCEEECHHHHHHHHHHc
Confidence 999999999999999999999999999764
No 14
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=99.23 E-value=1e-08 Score=117.37 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=93.0
Q ss_pred cC-CCceeEEEEccc-----cceec----------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHH
Q 007149 406 VK-LGHCYELVVTTF-----TGLYR----------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEE 463 (616)
Q Consensus 406 v~-~G~~yelVvTt~-----~GlyR----------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~ 463 (616)
++ +|+.+||+|+.. .|+|. |+|||+++++. ...+.|+||.+|+|++.|+++.+.
T Consensus 436 ~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR~dd~i~~~G~ri~p~ 511 (625)
T TIGR02188 436 VEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDK----DGYIWITGRVDDVINVSGHRLGTA 511 (625)
T ss_pred CCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcC----CCcEEEEecccCEEEeCCEEECHH
Confidence 35 799999999862 23321 89999999873 468999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCEEEeEEEee-cCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhcc
Q 007149 464 DLLKAVTEAKLLIEPLGFLLTEYTAYA-DTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKK 542 (616)
Q Consensus 464 ~v~~av~~a~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~ 542 (616)
+|+.+|.+. .+ |.+..+.. +.......-+.|+.+.. +. ..+.+..+++.+.+.+.|.. |
T Consensus 512 eIE~~l~~~------p~--V~e~~vvg~~~~~~g~~~~a~vv~~~-~~----~~~~~~~~~l~~~~~~~l~~-~------ 571 (625)
T TIGR02188 512 EIESALVSH------PA--VAEAAVVGIPDDIKGQAIYAFVTLKD-GY----EPDDELRKELRKHVRKEIGP-I------ 571 (625)
T ss_pred HHHHHHHhC------CC--cceEEEEeeEcCCCCeEEEEEEEeCC-CC----CCCHHHHHHHHHHHHhhcCC-C------
Confidence 999999763 22 33444432 11112223346666642 21 22233333444444444411 1
Q ss_pred CCccCCeEEEEcC------CCcHHHHHHHHHhcCCCCCCccCCcccCCHHHHHHHhc
Q 007149 543 DNSIGPLEIRVVK------DGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDS 593 (616)
Q Consensus 543 ~g~l~p~~v~~v~------~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 593 (616)
..|-.|.+|. .|-..+-.=..+..|.. .+++.+.-+.|++.++.+++
T Consensus 572 ---~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~ 624 (625)
T TIGR02188 572 ---AKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEE-EILGDTSTLEDPSVVEELIE 624 (625)
T ss_pred ---ccCcEEEECCCCCCCCCccchHHHHHHHHcCCC-CCCCCcccccCHHHHHHHHh
Confidence 1233444442 33333221111223431 23556677778999888764
No 15
>PRK07514 malonyl-CoA synthase; Validated
Probab=99.18 E-value=5.4e-09 Score=115.59 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=85.0
Q ss_pred EEEEEccchh---chHHHHHhhcCCCCeeeccccccccceeecC--CCCCCCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSMA---QYIPILEFYSGGLPLVSTMYASSECYFGINF--KPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~~---~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~--~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+.. ...+.++..+ +++++ ..||+||+.+.... ...+.+...+. ..++ .....+++++
T Consensus 271 lr~~~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~G~-~~~~-~~v~i~d~~~------- 339 (504)
T PRK07514 271 MRLFISGSAPLLAETHREFQERT-GHAIL-ERYGMTETNMNTSNPYDGERRAGTVGF-PLPG-VSLRVTDPET------- 339 (504)
T ss_pred eeeEEecCCCCCHHHHHHHHHHh-CCcce-eecccccccccccCCccccccCccccc-CCCC-cEEEEEECCC-------
Confidence 6677777653 3345555556 67887 89999998543211 01111111111 1222 2344444222
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
.. .+..|+.+||+|++ ..|+|+ |+|||++++.. ...+.
T Consensus 340 ----------------~~-----~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~ 394 (504)
T PRK07514 340 ----------------GA-----ELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE----RGYVH 394 (504)
T ss_pred ----------------CC-----CCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC----CccEE
Confidence 12 24678899999976 456654 99999999984 45799
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.+++++++|+++++.+|+.++.+
T Consensus 395 ~~GR~~~~i~~~G~~i~~~~IE~~l~~ 421 (504)
T PRK07514 395 IVGRGKDLIISGGYNVYPKEVEGEIDE 421 (504)
T ss_pred EeccccceEEeCCeEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 16
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.17 E-value=2.4e-09 Score=120.96 Aligned_cols=130 Identities=21% Similarity=0.303 Sum_probs=85.0
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC---CCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK---PSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++|+. ......+++.+ +++++ ..||+||+...+...+..+ +...+. ..|+ ..++.++.+...
T Consensus 338 lr~i~~gg~~l~~~~~~~~~~~~-~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~~~---- 409 (573)
T PRK05605 338 VRNAFSGAMALPVSTVELWEKLT-GGLLV-EGYGLTETSPIIVGNPMSDDRRPGYVGV-PFPD-TEVRIVDPEDPD---- 409 (573)
T ss_pred ccEEEECCCcCCHHHHHHHHHHh-CCCee-cccccchhchhhhcCCcccCCcCCcccc-CCCC-CEEEEEcCCCCC----
Confidence 556666764 33445555555 67888 8999999843221111111 111121 2233 244555433210
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeEE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~ 444 (616)
. .+..|+.+||+|++ ..|+| .|+|||++++.. ...+.
T Consensus 410 ------------------~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~ 462 (573)
T PRK05605 410 ------------------E-----TMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEE----DGFIR 462 (573)
T ss_pred ------------------c-----cCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcC----CCcEE
Confidence 1 24678899999975 35555 399999999873 45899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.+++++++|+++++.+|+.++..
T Consensus 463 i~gR~dd~i~~~G~~v~p~eIE~~l~~ 489 (573)
T PRK05605 463 IVDRIKELIITGGFNVYPAEVEEVLRE 489 (573)
T ss_pred EEeccccceeeCCEEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 17
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.17 E-value=3.9e-09 Score=122.83 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=86.8
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC--CCCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL--CKPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
.+.++++||. ...++++.+.+++++++ +.||.||+......... ..+...+. .+++. .++.++.+
T Consensus 261 slr~i~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~iG~-p~~~~-~v~i~d~~------- 330 (705)
T PRK06060 261 SLRCVVSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVGQTFVSNRVDEWRLGTLGR-VLPPY-EIRVVAPD------- 330 (705)
T ss_pred ceeEEEEecCcCCHHHHHHHHHHcCCCceE-eeeeccccCceEEeccCCCCCcCcccc-cCCCc-EEEEECCC-------
Confidence 3667777764 34456677778789998 99999998432211110 00111121 22222 23333221
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-----------cccCCEEEEecccCCCCeEEEE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-----------YRVGDILMVTGFHNNAPQFWFV 446 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-----------Yr~GDvv~v~gf~~~~P~i~f~ 446 (616)
.+ .+..|+.+||+|+. ..|+|. |+|||++++.. ...+.|+
T Consensus 331 -----------------g~-----~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~----dG~l~~~ 384 (705)
T PRK06060 331 -----------------GT-----TAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDS----DGWVTYR 384 (705)
T ss_pred -----------------CC-----CCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECC----CceEEEe
Confidence 11 24679999999975 345543 99999999873 4589999
Q ss_pred eecCceeeccceecCHHHHHHHHHHH
Q 007149 447 HRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 447 gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
||.+++++++|+++...+|+.+|.+.
T Consensus 385 GR~dd~ik~~G~~v~~~eIE~~l~~~ 410 (705)
T PRK06060 385 CRADDTEVIGGVNVDPREVERLIIED 410 (705)
T ss_pred cccCceEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999999763
No 18
>PRK09274 peptide synthase; Provisional
Probab=99.16 E-value=6.4e-09 Score=116.90 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=53.4
Q ss_pred ccCCCceeEEEEcc---ccce------------------eccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHH
Q 007149 405 NVKLGHCYELVVTT---FTGL------------------YRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEE 463 (616)
Q Consensus 405 ev~~G~~yelVvTt---~~Gl------------------yRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~ 463 (616)
++..|+.+||+|+. ..|+ .+|+|||++++.. ...+.|+||.+++++++|+++++.
T Consensus 381 ~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~~d~i~~~G~~v~p~ 456 (552)
T PRK09274 381 RLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDA----QGRLWFCGRKAHRVETAGGTLYTI 456 (552)
T ss_pred cCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEcc----CCcEEEEeccCCeEEECCEEECcH
Confidence 46789999999953 1222 3699999999873 568999999999999999999999
Q ss_pred HHHHHHHHH
Q 007149 464 DLLKAVTEA 472 (616)
Q Consensus 464 ~v~~av~~a 472 (616)
+|+.+|.+.
T Consensus 457 eIE~~l~~~ 465 (552)
T PRK09274 457 PCERIFNTH 465 (552)
T ss_pred HHHHHHHhC
Confidence 999999763
No 19
>PLN02574 4-coumarate--CoA ligase-like
Probab=99.14 E-value=7.8e-09 Score=116.85 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=85.5
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeec--CCCCCCCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGIN--FKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~--~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+..|+. ...++++.+.+++++++ ..||+||+..... ...................-.+.+++++
T Consensus 321 lr~~~~gg~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~------- 392 (560)
T PLN02574 321 LKQVSCGAAPLSGKFIQDFVQTLPHVDFI-QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWST------- 392 (560)
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCCcEE-ecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCC-------
Confidence 555566654 34456666677788888 8999999843211 1111100111121111222334443222
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
.+ .|..|+.+||+|+. ..|+|. |+|||+.++.. ...+.
T Consensus 393 ----------------g~-----~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~----~G~l~ 447 (560)
T PLN02574 393 ----------------GC-----LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDE----DGYLY 447 (560)
T ss_pred ----------------Cc-----CCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEEC----CCeEE
Confidence 11 24689999999975 244432 99999999973 56899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.++++++.|++++..+|+.+|..
T Consensus 448 i~GR~~d~i~~~G~~v~~~eiE~~l~~ 474 (560)
T PLN02574 448 IVDRLKEIIKYKGFQIAPADLEAVLIS 474 (560)
T ss_pred EEecchhheEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999865
No 20
>PLN02654 acetate-CoA ligase
Probab=99.14 E-value=5.4e-08 Score=112.91 Aligned_cols=159 Identities=13% Similarity=0.185 Sum_probs=94.0
Q ss_pred cCCCceeEEEEcc-----ccceec----------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 406 VKLGHCYELVVTT-----FTGLYR----------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 406 v~~G~~yelVvTt-----~~GlyR----------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
++.|+.+||+|+. +.|+|. |+|||+++++. ...+.|+||.+|+|++.|+++.+.+
T Consensus 475 ~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~----dG~l~i~GR~dd~I~~~G~ri~p~E 550 (666)
T PLN02654 475 IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDK----DGYYWLTGRVDDVINVSGHRIGTAE 550 (666)
T ss_pred CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECC----CCcEEEeeeccCeEEeCCEEECHHH
Confidence 4567789999974 234332 89999999983 5689999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCEEEeEEEee-cCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccC
Q 007149 465 LLKAVTEAKLLIEPLGFLLTEYTAYA-DTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKD 543 (616)
Q Consensus 465 v~~av~~a~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~ 543 (616)
|+.+|.+.. + |.+-.++. +.....-.-+.|+.++. +. ..+.+..+++.+.+.+.|
T Consensus 551 IE~~l~~~p------~--V~eaaVvg~~d~~~ge~~~a~Vvl~~-~~----~~~~~l~~~l~~~~~~~L----------- 606 (666)
T PLN02654 551 VESALVSHP------Q--CAEAAVVGIEHEVKGQGIYAFVTLVE-GV----PYSEELRKSLILTVRNQI----------- 606 (666)
T ss_pred HHHHHHhCC------C--eeeEEEEeeEcCCCCeEEEEEEEECC-CC----CCCHHHHHHHHHHHHHhC-----------
Confidence 999997632 2 33444322 21112223346666652 22 223333333333333333
Q ss_pred Ccc-CCeEEEEcC------CCcHHHHHHHHHhcCCCCCCccCCcccCCHHHHHHHhc
Q 007149 544 NSI-GPLEIRVVK------DGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDS 593 (616)
Q Consensus 544 g~l-~p~~v~~v~------~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 593 (616)
+.. .|-.|.+|+ .|-..+-.=.....|. ..+.+.+.-+.|++.++.+.+
T Consensus 607 ~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 662 (666)
T PLN02654 607 GAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ-LDELGDTSTLADPGVVDQLIA 662 (666)
T ss_pred CCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC-CCCCCCcccccCHHHHHHHHH
Confidence 222 244566652 3332221111112342 226677888889999988764
No 21
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=99.14 E-value=1.9e-08 Score=115.31 Aligned_cols=131 Identities=9% Similarity=0.116 Sum_probs=83.6
Q ss_pred ceEEEEEccchh---chHHHHHhhcCCCCeeeccccccccceee-cCCCCC-----CCCCCceeecCCceEEEEEeCCCC
Q 007149 305 KYIEVIVTGSMA---QYIPILEFYSGGLPLVSTMYASSECYFGI-NFKPLC-----KPSDVSYTLLPNMAYFEFLPVEKS 375 (616)
Q Consensus 305 ~~i~~~~~G~~~---~y~~~l~~~~~~~~~~~~~y~asE~~~~i-~~~~~~-----~~~~~~~~l~~~~~~~EFip~~~~ 375 (616)
+.+..+.+|+.. ...+.+++.+ +++++ ..||.||+...+ ...+.. .+...+. .+|+. -++.++.++
T Consensus 355 ~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~-p~~g~-~~~i~d~~~- 429 (629)
T PRK10524 355 SSLRALFLAGEPLDEPTASWISEAL-GVPVI-DNYWQTETGWPILAIARGVEDRPTRLGSPGV-PMYGY-NVKLLNEVT- 429 (629)
T ss_pred hheeEEEEeCCCCCHHHHHHHHHhc-CCCeE-eccccccccchhhcCCCCcccCcCCCCCccc-CcCCc-eEEEEeCCC-
Confidence 347777777753 3345566666 68888 999999985221 111100 0011111 12222 123333211
Q ss_pred CCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc------ccee-----------------ccccCCEEE
Q 007149 376 NGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF------TGLY-----------------RYRVGDILM 432 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~------~Gly-----------------RYr~GDvv~ 432 (616)
+++ |..|+.+||+|+.. .|+| -|+|||+++
T Consensus 430 ----------------------g~~-----~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~ 482 (629)
T PRK10524 430 ----------------------GEP-----CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGI 482 (629)
T ss_pred ----------------------CCC-----CCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEE
Confidence 122 46899999999753 2222 299999999
Q ss_pred EecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 433 VTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 433 v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+. ....+.|+||.+|+|++.|+++.+.+|+.+|.+
T Consensus 483 ~d----~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~ 517 (629)
T PRK10524 483 RD----ADGYYFILGRTDDVINVAGHRLGTREIEESISS 517 (629)
T ss_pred Ec----CCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHh
Confidence 87 356899999999999999999999999999975
No 22
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=99.13 E-value=7.7e-09 Score=116.10 Aligned_cols=130 Identities=21% Similarity=0.302 Sum_probs=84.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecC-CCCC--CCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINF-KPLC--KPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~-~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+.+++.|+. ....+.++..+ +++++ ..||.||+...+.. .... .+...++.+ +.. .++.+..++.
T Consensus 314 l~~i~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~-~~~-~~~v~~~d~~----- 384 (541)
T TIGR03205 314 LATIGSGGAPLPVEVANFFERKT-GLKLK-SGWGMTETCSPGTGHPPEGPDKPGSIGLML-PGI-ELDVVSLDDP----- 384 (541)
T ss_pred cceEEEccccCCHHHHHHHHHHh-CCCee-cccccccCCcccccCCCCCCCCCCCcceec-cCc-eeEEEecCCC-----
Confidence 566677765 33445566666 68888 99999998432111 1100 112233322 222 2232322221
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeEE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~ 444 (616)
.+ +++.|+.+||+|++ ..|+| +|+|||++++.. ...+.
T Consensus 385 -----------------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~ 438 (541)
T TIGR03205 385 -----------------TK-----VLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDT----DGYFF 438 (541)
T ss_pred -----------------Cc-----cCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcC----CceEE
Confidence 12 24679999999986 34544 589999999873 45899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.++++++.|+++++.+|+.++.+
T Consensus 439 i~GR~~~~i~~~G~~i~~~eIE~~l~~ 465 (541)
T TIGR03205 439 LVDRKKDMIISGGFNVYPQMIEQAIYE 465 (541)
T ss_pred EEccccCeEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999976
No 23
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=99.13 E-value=5.5e-09 Score=117.57 Aligned_cols=128 Identities=11% Similarity=0.117 Sum_probs=83.8
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCC----CCCceeecCCceEEEEEeCCCCCCcc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKP----SDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~----~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
+.++++|+. ...++.+++.+ +++++ +.||+||+.......+.... ...+. ..|+. -++.++.+
T Consensus 314 l~~~~~~G~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~v~i~d~~------ 383 (547)
T PRK13295 314 LRTFLCAGAPIPGALVERARAAL-GAKIV-SAWGMTENGAVTLTKLDDPDERASTTDGC-PLPGV-EVRVVDAD------ 383 (547)
T ss_pred ceEEEEecCCCCHHHHHHHHHHh-CCCeE-EeccCCCCCCeeeccCCCcchhccCcccc-ccCCc-EEEEECCC------
Confidence 556666654 44556666777 78998 99999998432111110000 00111 11211 12333211
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec------------cccCCEEEEecccCCCCeEE
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
. .++..|+.+||+|+. +.|+|. |+|||++++.. .+.+.
T Consensus 384 ------------------~-----~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~----~g~l~ 436 (547)
T PRK13295 384 ------------------G-----APLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDA----DGYIR 436 (547)
T ss_pred ------------------C-----CCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcC----CceEE
Confidence 1 234679999999975 355542 99999999973 56899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.++++++.|+|+++.+|+.+|.+
T Consensus 437 ~~gR~~~~i~~~G~~v~p~~IE~~l~~ 463 (547)
T PRK13295 437 ISGRSKDVIIRGGENIPVVEIEALLYR 463 (547)
T ss_pred EEeccCCeEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999975
No 24
>PRK07788 acyl-CoA synthetase; Validated
Probab=99.13 E-value=9.2e-09 Score=115.66 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=83.6
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC---CCCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL---CKPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~---~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+..++.||. ...++.+++.+ +.+++ +.||+||+.+..-..+. ..+...+. .+++. -++.++.+
T Consensus 324 ~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-~~~~~-~~~i~d~~------ 393 (549)
T PRK07788 324 SLKIIFVSGSALSPELATRALEAF-GPVLY-NLYGSTEVAFATIATPEDLAEAPGTVGR-PPKGV-TVKILDEN------ 393 (549)
T ss_pred ceeEEEEeCCCCCHHHHHHHHHHh-Cccce-eccCcchhchhhccChhhhhhcCCCccc-CCCCc-EEEEECCC------
Confidence 3666676764 44456666667 56777 89999997432111110 00111111 12222 23333321
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---ccee----------ccccCCEEEEecccCCCCeEEEE
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLY----------RYRVGDILMVTGFHNNAPQFWFV 446 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~Gly----------RYr~GDvv~v~gf~~~~P~i~f~ 446 (616)
.+ ++..|+.+||+|++. .|++ -|+|||++++.. ...+.|+
T Consensus 394 ------------------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~ 446 (549)
T PRK07788 394 ------------------GN-----EVPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDE----DGLLFVD 446 (549)
T ss_pred ------------------cC-----CCCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEcC----CCCEEEe
Confidence 12 246799999999863 3443 279999998873 5689999
Q ss_pred eecCceeeccceecCHHHHHHHHHH
Q 007149 447 HRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 447 gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
||.+|+++++|+++++.+|+.++.+
T Consensus 447 GR~dd~i~~~G~~v~p~eIE~~l~~ 471 (549)
T PRK07788 447 GRDDDMIVSGGENVFPAEVEDLLAG 471 (549)
T ss_pred ccCcceEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999999976
No 25
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=99.13 E-value=6.2e-08 Score=111.85 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=94.1
Q ss_pred CCceeEEEEccc-----cceec------------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 408 LGHCYELVVTTF-----TGLYR------------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 408 ~G~~yelVvTt~-----~GlyR------------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
.|+.+||+|+.. .|+|. |+|||+++++. ...+.|+||.+++|+++|+++.+.|
T Consensus 460 ~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR~dd~Ik~~G~rI~p~E 535 (655)
T PRK03584 460 VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE----HGGVVIYGRSDATLNRGGVRIGTAE 535 (655)
T ss_pred CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC----CCeEEEEeeccCeeecCcEEECHHH
Confidence 588899999752 34431 78999999973 4689999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCEEEeEEEee-cCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccC
Q 007149 465 LLKAVTEAKLLIEPLGFLLTEYTAYA-DTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKD 543 (616)
Q Consensus 465 v~~av~~a~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~ 543 (616)
||.+|.+.. + |.+-.+.. +.......-++|++++. +. ..+.+..+++.+.+.+.|.+ |
T Consensus 536 IE~~l~~~p------~--V~ea~vvg~~~~~~g~~~~a~vv~~~-~~----~~~~~~~~~l~~~~~~~L~~-~------- 594 (655)
T PRK03584 536 IYRQVEALP------E--VLDSLVIGQEWPDGDVRMPLFVVLAE-GV----TLDDALRARIRTTIRTNLSP-R------- 594 (655)
T ss_pred HHHHHHhCC------C--cceEEEEeeEcCCCCEEEEEEEEECC-CC----CCcHHHHHHHHHHHHhhCCC-C-------
Confidence 999997631 2 23433322 22122234457777752 21 23333334444444444411 1
Q ss_pred CccCCeEEEEcC------CCcHHHHHHHHHhcCCCCCCccCCcccCCHHHHHHHhc
Q 007149 544 NSIGPLEIRVVK------DGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDS 593 (616)
Q Consensus 544 g~l~p~~v~~v~------~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 593 (616)
.-|-.|.+|. .|--.+..=..+..|...+|...+.-+.|++.++.+.+
T Consensus 595 --~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (655)
T PRK03584 595 --HVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRPVKKAVNRDALANPEALDWFAD 648 (655)
T ss_pred --cCCCEEEECCCCCCCCCccchHHHHHHHHcCCCCCCCCCcccccCHHHHHHHHH
Confidence 1244555553 23222211111224655555546667778988888754
No 26
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.13 E-value=1.1e-08 Score=112.93 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=50.8
Q ss_pred CceeEEEEccc---ccee-c------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 409 GHCYELVVTTF---TGLY-R------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 409 G~~yelVvTt~---~Gly-R------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+.+||+|++. .|++ + |+|||++++.. ...+.++||.+++++++|+++++.+|+.++.+
T Consensus 365 g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~----~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~ 439 (521)
T PRK06187 365 GEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDE----DGYLYITDRIKDVIISGGENIYPRELEDALYG 439 (521)
T ss_pred CCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcC----CCCEEEeecccceEEcCCeEECHHHHHHHHHh
Confidence 99999999864 4443 3 99999999974 45799999999999999999999999998865
No 27
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=99.12 E-value=1.2e-08 Score=115.59 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=83.9
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccce-ee-cCCC-CCCCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYF-GI-NFKP-LCKPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~-~i-~~~~-~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++||. ......+++.+ +++++ ..||+||+.. .. +... ...+...+. ..|+ ...+.++.+.
T Consensus 325 lr~~~~gG~~l~~~~~~~~~~~~-g~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~g-~~~~i~d~~~------ 394 (570)
T PRK04319 325 LRHILSVGEPLNPEVVRWGMKVF-GLPIH-DNWWMTETGGIMIANYPAMDIKPGSMGK-PLPG-IEAAIVDDQG------ 394 (570)
T ss_pred ceEEEEcccCCCHHHHHHHHHHh-CCCeE-eceeecccCCEEEecCCCCCCCCCcCcC-CCCC-CEEEEECCCC------
Confidence 566666664 33445566666 68888 9999999842 22 1110 011111222 1222 2334443221
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc-----cccee-------------ccccCCEEEEecccCCCCe
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT-----FTGLY-------------RYRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt-----~~Gly-------------RYr~GDvv~v~gf~~~~P~ 442 (616)
. ++++|+.+||+|+. +.|+| -|+|||++++.. ...
T Consensus 395 ------------------~-----~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~----~g~ 447 (570)
T PRK04319 395 ------------------N-----ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDE----DGY 447 (570)
T ss_pred ------------------C-----CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECC----Cee
Confidence 1 24789999999974 23554 289999999973 558
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+.|+||.+++++++|+++++.+||.++.+.
T Consensus 448 l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 448 FWFQGRVDDVIKTSGERVGPFEVESKLMEH 477 (570)
T ss_pred EEEEecCCCEEEECCEEECHHHHHHHHhhC
Confidence 999999999999999999999999999763
No 28
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.12 E-value=3.6e-09 Score=119.51 Aligned_cols=129 Identities=16% Similarity=0.276 Sum_probs=85.4
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC--CCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC--KPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
.+.+++.|+. ....+.+++.+ +++++ ..||+||+...+...+.. .+...+. .+|+ ...+.++++
T Consensus 327 ~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~vG~-~~~~-~~v~i~d~~------- 395 (562)
T PRK05677 327 ALKLTLSGGMALQLATAERWKEVT-GCAIC-EGYGMTETSPVVSVNPSQAIQVGTIGI-PVPS-TLCKVIDDD------- 395 (562)
T ss_pred hceEEEEcCccCCHHHHHHHHHHc-CCCee-ccCCccccCcceeecCccCCCCCccCc-cCCC-CEEEEECCC-------
Confidence 3666677764 33445566666 78888 999999984322211111 1111222 2222 234444321
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i 443 (616)
.. +|..|+.+||+|++ ..|+|. |+|||+.+++. ...+
T Consensus 396 -----------------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~----~G~l 449 (562)
T PRK05677 396 -----------------GN-----ELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQE----DGYM 449 (562)
T ss_pred -----------------CC-----CCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECC----CCcE
Confidence 11 24688999999975 344442 99999999984 4589
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|.||.++++++.|+++++.+|+.+|.+
T Consensus 450 ~i~GR~~d~i~~~G~~i~p~eiE~~l~~ 477 (562)
T PRK05677 450 RIVDRKKDMILVSGFNVYPNELEDVLAA 477 (562)
T ss_pred EEEecCcCeEEeCCEEECHHHHHHHHHh
Confidence 9999999999999999999999999965
No 29
>PRK09088 acyl-CoA synthetase; Validated
Probab=99.11 E-value=1.8e-08 Score=111.33 Aligned_cols=130 Identities=18% Similarity=0.287 Sum_probs=83.8
Q ss_pred eEEEEEccchhchHHHHHhhc-CCCCeeeccccccccce--eecCCCC---CCCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSMAQYIPILEFYS-GGLPLVSTMYASSECYF--GINFKPL---CKPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~~~y~~~l~~~~-~~~~~~~~~y~asE~~~--~i~~~~~---~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+..+.+||...-...++++. .+++++ ..||+||+.. +++..+. ..+...+. ..| ....+.++.+
T Consensus 253 ~l~~~~~gG~~~~~~~~~~~~~~g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~-~~~-~~~~~i~d~~------ 323 (488)
T PRK09088 253 HLTALFTGGAPHAAEDILGWLDDGIPMV-DGFGMSEAGTVFGMSVDCDVIRAKAGAAGI-PTP-TVQTRVVDDQ------ 323 (488)
T ss_pred cceEEEecCCCCCHHHHHHHHHhCCcee-eeecccccccccccCCCcccccccCCcccc-CCC-CcEEEEECCC------
Confidence 467777777643333343322 268888 8999999843 2221110 01111111 222 2234444321
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~ 442 (616)
.. ++..|+.+||+|++ ..|+|+ |+|||++++.. ...
T Consensus 324 ------------------~~-----~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~ 376 (488)
T PRK09088 324 ------------------GN-----DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA----DGF 376 (488)
T ss_pred ------------------CC-----CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcC----CCc
Confidence 11 24678899999986 345543 99999999973 458
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.|+||.++++++.|+|+++.+||.+|.+
T Consensus 377 l~i~GR~~d~i~~~G~~i~~~~iE~~l~~ 405 (488)
T PRK09088 377 FWVVDRKKDMFISGGENVYPAEIEAVLAD 405 (488)
T ss_pred EEEeccccceEEeCCEEECHHHHHHHHHh
Confidence 99999999999999999999999999865
No 30
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=99.10 E-value=1.4e-08 Score=111.89 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=50.8
Q ss_pred cCCCceeEEEEccc---ccee-----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDL 465 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v 465 (616)
+..|+.+||+|+.. .|+| -|+|||++++ . ...+.+.||.+|+++++|+|+++.+|
T Consensus 339 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~----~g~~~~~GR~~d~i~~~G~~v~~~~i 413 (503)
T PRK04813 339 LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E----DGLLFYQGRIDFQIKLNGYRIELEEI 413 (503)
T ss_pred CCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e----CCeEEEeccccceEEECcEEeCHHHH
Confidence 46788999999752 1211 3999999998 3 34899999999999999999999999
Q ss_pred HHHHHHH
Q 007149 466 LKAVTEA 472 (616)
Q Consensus 466 ~~av~~a 472 (616)
+.++.+.
T Consensus 414 E~~l~~~ 420 (503)
T PRK04813 414 EQNLRQS 420 (503)
T ss_pred HHHHHhC
Confidence 9999763
No 31
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=99.09 E-value=2.6e-08 Score=112.27 Aligned_cols=128 Identities=18% Similarity=0.224 Sum_probs=84.0
Q ss_pred EEEEEccch-hchHHHHHhhcCCCCeeeccccccccceeecCC-CCCCCCCCceeecCCceEEEEEeCCCCCCcccchhh
Q 007149 307 IEVIVTGSM-AQYIPILEFYSGGLPLVSTMYASSECYFGINFK-PLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQ 384 (616)
Q Consensus 307 i~~~~~G~~-~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~-~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~ 384 (616)
+..+.+|+. ...++.+++.+ +++++ +.||+||+...+... +...+...+. ..+ ..-.++++.+
T Consensus 296 l~~~~~g~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~vG~-~~~-~~~~~i~d~~----------- 360 (542)
T PRK06155 296 VRVALGPGVPAALHAAFRERF-GVDLL-DGYGSTETNFVIAVTHGSQRPGSMGR-LAP-GFEARVVDEH----------- 360 (542)
T ss_pred eEEEEEcCCCHHHHHHHHHHc-CCCEE-eeecccccCccccCCCCCCCCCCcCc-cCC-CceEEEECCC-----------
Confidence 344445654 34456666667 78888 999999984332111 1111111121 122 2233444311
Q ss_pred cCCCCCCCCCCCCcceeeccccCCCceeEEEEccc------ccee-------------ccccCCEEEEecccCCCCeEEE
Q 007149 385 CNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF------TGLY-------------RYRVGDILMVTGFHNNAPQFWF 445 (616)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~------~Gly-------------RYr~GDvv~v~gf~~~~P~i~f 445 (616)
. .++..|+.+||+|+.. .|+| +|+|||++++.. ...+.|
T Consensus 361 -------------~-----~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~----dG~l~i 418 (542)
T PRK06155 361 -------------D-----QELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDA----DGWFRF 418 (542)
T ss_pred -------------C-----CCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcC----CceEEE
Confidence 1 1356789999999864 3433 599999999973 558999
Q ss_pred EeecCceeeccceecCHHHHHHHHHH
Q 007149 446 VHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 446 ~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+||.+|++++.|+++++.+|+.+|.+
T Consensus 419 ~GR~~d~i~~~G~~v~p~eIE~~l~~ 444 (542)
T PRK06155 419 VDRIKDAIRRRGENISSFEVEQVLLS 444 (542)
T ss_pred EecCCCEEEeCCEEECHHHHHHHHHh
Confidence 99999999999999999999999976
No 32
>PRK06164 acyl-CoA synthetase; Validated
Probab=99.09 E-value=2e-08 Score=112.45 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=52.8
Q ss_pred cCCCceeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
++.|+.+||+|++ +.|+| -|+|||++++.. ...+.|+||.++++++.|+++++.+|+.+
T Consensus 372 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~~~i~~~G~~i~p~eIE~~ 447 (540)
T PRK06164 372 LPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG----DGQFVYQTRMGDSLRLGGFLVNPAEIEHA 447 (540)
T ss_pred CCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCCeEEEcC----CceEEEEeecCCeEEECCEEcCHHHHHHH
Confidence 4789999999987 24432 299999999884 45899999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+..
T Consensus 448 l~~ 450 (540)
T PRK06164 448 LEA 450 (540)
T ss_pred HHh
Confidence 965
No 33
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=99.08 E-value=2.9e-08 Score=109.72 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=52.4
Q ss_pred cCCCceeEEEEcc---cccee-----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY-----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDL 465 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly-----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v 465 (616)
+.+|+.+||+|+. ..|+| -|+|||+.+++. . .+.++||.+|+++++|+|+++.+|
T Consensus 337 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~----~-~l~i~GR~~d~i~~~G~~v~~~~I 411 (502)
T TIGR01734 337 LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITD----G-QLFYQGRLDFQIKLHGYRIELEDI 411 (502)
T ss_pred CCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEEC----C-EEEEeccccCeEEECcEEeCHHHH
Confidence 4678999999975 23333 389999999983 3 999999999999999999999999
Q ss_pred HHHHHHH
Q 007149 466 LKAVTEA 472 (616)
Q Consensus 466 ~~av~~a 472 (616)
+.++.+.
T Consensus 412 E~~l~~~ 418 (502)
T TIGR01734 412 EFNLRQS 418 (502)
T ss_pred HHHHHcC
Confidence 9999763
No 34
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=99.08 E-value=4.6e-08 Score=112.38 Aligned_cols=62 Identities=10% Similarity=0.112 Sum_probs=52.2
Q ss_pred cCCCceeEEEEccc------ccee-----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCH
Q 007149 406 VKLGHCYELVVTTF------TGLY-----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNE 462 (616)
Q Consensus 406 v~~G~~yelVvTt~------~Gly-----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e 462 (616)
|..|+.+||+|+.. .|+| .|+|||++++.. ...+.|+||.+|+|++.|+++.+
T Consensus 432 ~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~----dG~l~i~GR~dd~ik~~G~rv~~ 507 (628)
T TIGR02316 432 CGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDE----DGYTFILGRTDDVINVAGHRLGT 507 (628)
T ss_pred CCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcC----CCcEEEEEcCcceEEeCCEEeCH
Confidence 46789999999753 2332 399999999873 45899999999999999999999
Q ss_pred HHHHHHHHH
Q 007149 463 EDLLKAVTE 471 (616)
Q Consensus 463 ~~v~~av~~ 471 (616)
.+|+.+|.+
T Consensus 508 ~eIE~~l~~ 516 (628)
T TIGR02316 508 REIEESVSS 516 (628)
T ss_pred HHHHHHHHh
Confidence 999999975
No 35
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.06 E-value=2.1e-08 Score=110.84 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=52.4
Q ss_pred cCCCceeEEEEccc---ccee----------c----cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY----------R----YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly----------R----Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
++.|+.+||+|++. .|+| + |+|||++++.. ...+.++||.++++++.|++++..+|+.+
T Consensus 358 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~iE~~ 433 (513)
T PRK07656 358 VPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDE----EGYLYIVDRKKDMFIVGGFNVYPAEVEEV 433 (513)
T ss_pred CCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcC----CeeEEEEecccceEEeCCEEeCHHHHHHH
Confidence 47899999999854 3333 2 89999999973 55899999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
|..
T Consensus 434 l~~ 436 (513)
T PRK07656 434 LYE 436 (513)
T ss_pred HHh
Confidence 965
No 36
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=99.05 E-value=6.2e-08 Score=112.09 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=92.4
Q ss_pred CCceeEEEEccc-----ccee------c------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 408 LGHCYELVVTTF-----TGLY------R------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 408 ~G~~yelVvTt~-----~Gly------R------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
.|+.+||+|+.- .|+| + |++||+++++. ...+.|+||.+++|+++|+++.+.|
T Consensus 461 ~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~----dG~l~i~GR~dd~I~~~G~ri~p~E 536 (652)
T TIGR01217 461 TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP----RGGIVIHGRSDSTLNPQGVRMGSAE 536 (652)
T ss_pred CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC----CCcEEEEecccCeEecCCEEcCHHH
Confidence 488999999752 3444 1 78999999983 5689999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCEEEeEEEee-cCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccC
Q 007149 465 LLKAVTEAKLLIEPLGFLLTEYTAYA-DTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKD 543 (616)
Q Consensus 465 v~~av~~a~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~ 543 (616)
|+.+|.+.. + |.+-.|.. +.....-.-++|+.+.. +. ..+.+..+++.+.+.+.|
T Consensus 537 IE~~l~~~p------~--V~eaavvg~~~~~~ge~~~afVv~~~-~~----~~~~~~~~~l~~~~~~~l----------- 592 (652)
T TIGR01217 537 IYNAVERLD------E--VRESLCIGQEQPDGGYRVVLFVHLAP-GA----TLDDALLDRIKRTIRAGL----------- 592 (652)
T ss_pred HHHHHHhCC------C--cceEEEEeeecCCCCEEEEEEEEECC-CC----CCCHHHHHHHHHHHHhhC-----------
Confidence 999997632 2 23333322 21112223346676642 22 233333334444444434
Q ss_pred Ccc-CCeEEEEcC---CCcHHHHHHHHHhcCCCCCCccCCcccCCHHHHHHHhc
Q 007149 544 NSI-GPLEIRVVK---DGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDS 593 (616)
Q Consensus 544 g~l-~p~~v~~v~---~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~ 593 (616)
+.. -|-.|.+|+ ...=.+.++..+.+=.....++.+.-+.|++.++.+.+
T Consensus 593 ~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (652)
T TIGR01217 593 SPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGTPVDNPGAIDNPELLDLYEE 646 (652)
T ss_pred CCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCCCCCCcccccCHHHHHHHHH
Confidence 111 244566653 11111222222221112234667778889999998855
No 37
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.05 E-value=6.4e-08 Score=108.84 Aligned_cols=129 Identities=13% Similarity=0.222 Sum_probs=87.1
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccce-eecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYF-GINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~-~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
+.++.+|+. ...++.+++.+++++++ ..||+||+.. +....... .+...+. .+| ....+.++.+.
T Consensus 292 lr~i~~gg~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~-~~~~~i~d~~~----- 363 (542)
T PRK07786 292 LRVLSWGAAPASDTLLRQMAATFPEAQIL-AAFGQTEMSPVTCMLLGEDAIRKLGSVGK-VIP-TVAARVVDENM----- 363 (542)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccceEecCcccccccCCCccc-cCC-CceEEEECCCC-----
Confidence 667676664 44567778888889988 9999999842 22111100 0011121 112 23344444211
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeE
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i 443 (616)
.++..|+.+||++.. ..|+|+ |+|||++++.. ...+
T Consensus 364 ------------------------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~----~g~~ 415 (542)
T PRK07786 364 ------------------------NDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDE----EGYV 415 (542)
T ss_pred ------------------------CCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcC----CceE
Confidence 124678899999964 355653 99999999873 4589
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.++||.++++++.|+++++.+|+.+|.+
T Consensus 416 ~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 443 (542)
T PRK07786 416 WVVDRKKDMIISGGENIYCAEVENVLAS 443 (542)
T ss_pred EEEecccceEEeCCEEECHHHHHHHHHh
Confidence 9999999999999999999999999965
No 38
>PRK06145 acyl-CoA synthetase; Validated
Probab=99.04 E-value=1.8e-08 Score=111.45 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=86.4
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCC---CC-CCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKP---LC-KPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~---~~-~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
+..+++|+. ...++.+++.+++++++ .+||+||+........ .+ .+...+. .+|+. -.+.++.+
T Consensus 266 l~~~~~gG~~~~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~~~~------ 336 (497)
T PRK06145 266 LAWCIGGGEKTPESRIRDFTRVFTRARYI-DAYGLTETCSGDTLMEAGREIEKIGSTGR-ALAHV-EIRIADGA------ 336 (497)
T ss_pred ceEEEecCCCCCHHHHHHHHHHcCCCceE-EeecCcccCCcceeccCccccccCCCccc-CCCCc-eEEEECCC------
Confidence 555666664 44556777778788888 8999999854321110 00 0111222 12221 22333211
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeE
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i 443 (616)
.. .+..|+.+||+++. ..|+|. |+|||+++... ...+
T Consensus 337 ------------------~~-----~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l 389 (497)
T PRK06145 337 ------------------GR-----WLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDE----EGFL 389 (497)
T ss_pred ------------------CC-----CCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcC----CCcE
Confidence 11 24578899999975 456663 99999999873 4589
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
.++||.++++++.|+++++.+|+.+|.+.
T Consensus 390 ~~~GR~~~~i~~~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 390 YLTDRKKDMIISGGENIASSEVERVIYEL 418 (497)
T ss_pred EEeccccceEEeCCeEECHHHHHHHHHhC
Confidence 99999999999999999999999999763
No 39
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=99.04 E-value=3.9e-08 Score=110.64 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=88.2
Q ss_pred CCceEEEEEccchhc---hHHHHHhhcCCCCeeeccccccccceeecCCCCC--CCCCCceeecCCceEEEEEeCCCCCC
Q 007149 303 RTKYIEVIVTGSMAQ---YIPILEFYSGGLPLVSTMYASSECYFGINFKPLC--KPSDVSYTLLPNMAYFEFLPVEKSNG 377 (616)
Q Consensus 303 ~l~~i~~~~~G~~~~---y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~ 377 (616)
+|+.++.+.+.+... -...+.+.+ |+++. +.||.||+..+ .+.+.. .+...+. -+|.. -.+-++.+ +
T Consensus 288 dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~-d~~gqTEtg~~-~~~~~~~~~~g~~g~-p~pG~-~~~vvdd~--g- 359 (528)
T COG0365 288 DLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWIL-DIYGQTETGMG-FIAGRPPVKNGSSGL-PLPGY-AVRRVDDE--G- 359 (528)
T ss_pred cchhheeeeccCCCCCHHHHHHHHHHh-CCCEe-ccccccccCcc-ccCCCCCcCCCCCCC-CCCCc-eeEEECCC--C-
Confidence 345577777777633 334555667 59999 99999999622 112211 1111222 23322 23333322 1
Q ss_pred cccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc-----cceec-------------cccCCEEEEecccCC
Q 007149 378 ELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF-----TGLYR-------------YRVGDILMVTGFHNN 439 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~-----~GlyR-------------Yr~GDvv~v~gf~~~ 439 (616)
++ +.+|+ ++|||... .|+|+ |.+||...++ .
T Consensus 360 ---------------------~~-----~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~D----e 408 (528)
T COG0365 360 ---------------------NP-----VPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERD----E 408 (528)
T ss_pred ---------------------Cc-----CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEc----c
Confidence 22 35687 99999853 45666 9999999998 3
Q ss_pred CCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 440 APQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 440 ~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
...|+|+||.+|+||+.|..+...|||++|.+.
T Consensus 409 dGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 409 DGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441 (528)
T ss_pred CCCEEEEeeccceEeccCeeccHHHHHHHHHhC
Confidence 579999999999999999999999999999763
No 40
>PRK07867 acyl-CoA synthetase; Validated
Probab=99.03 E-value=6.1e-08 Score=109.07 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=81.6
Q ss_pred EEEEEccc-hhchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhc
Q 007149 307 IEVIVTGS-MAQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQC 385 (616)
Q Consensus 307 i~~~~~G~-~~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~ 385 (616)
+.++.+|. ..+-...+.+.+ |++++ +.||+||+.+.+...+..++...+. ..++ ++.+..+..+. |
T Consensus 269 lr~~~gg~~~~~~~~~~~~~~-g~~l~-~~YG~TE~~~~~~~~~~~~~~~~g~-~~~~---~~i~~~~~~~~-------~ 335 (529)
T PRK07867 269 LRIVYGNEGAPGDIARFARRF-GCVVV-DGFGSTEGGVAITRTPDTPPGALGP-LPPG---VAIVDPDTGTE-------C 335 (529)
T ss_pred eEEEecCCCChHHHHHHHHHh-CCcEE-EeecccccccccccCCCCCCCCcCC-CCCC---EEEEECCCCCC-------C
Confidence 44444443 333345566666 68888 8999999854332222111111222 1222 56665332110 0
Q ss_pred CCCCCCCCCCCCcceeeccccCCCceeEEEE-cc---cccee-------------ccccCCEEEEecccCCCCeEEEEee
Q 007149 386 NGISDQDCQHDETEIVDLTNVKLGHCYELVV-TT---FTGLY-------------RYRVGDILMVTGFHNNAPQFWFVHR 448 (616)
Q Consensus 386 ~~~~~~~~~~~~~~~v~l~ev~~G~~yelVv-Tt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR 448 (616)
.-. +.+ +... + ...|..+||++ .. +.|+| +|+|||++++.. ...+.|+||
T Consensus 336 ~~g-~~~---~~~~-~----~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR 402 (529)
T PRK07867 336 PPA-EDA---DGRL-L----NADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDA----DGYAYFAGR 402 (529)
T ss_pred CCC-ccc---cccc-c----ccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeC----CCcEEEecc
Confidence 000 000 0000 0 01223789998 32 35555 699999999873 458999999
Q ss_pred cCceeeccceecCHHHHHHHHHH
Q 007149 449 KNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 449 ~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.+++++++|+|+++.+|+.+|.+
T Consensus 403 ~~d~i~~~G~~v~p~eIE~~l~~ 425 (529)
T PRK07867 403 LGDWMRVDGENLGTAPIERILLR 425 (529)
T ss_pred ccCeEEECCEEeCHHHHHHHHHh
Confidence 99999999999999999999976
No 41
>PRK07638 acyl-CoA synthetase; Validated
Probab=99.02 E-value=2e-08 Score=111.01 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=86.4
Q ss_pred EEEEEccch--hchHHHHHhhcCCCCeeeccccccccceeecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM--AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~--~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+.+|+. .....+++..+|++.++ +.||+||+.......+.. .+...+. .+|+ ..++.++.+
T Consensus 256 ~~~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~-------- 324 (487)
T PRK07638 256 MKIISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSFVTALVDEESERRPNSVGR-PFHN-VQVRICNEA-------- 324 (487)
T ss_pred eEEEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCceEEecccccCCCCCCCCc-ccCC-cEEEEECCC--------
Confidence 445556653 44567777888889998 899999995432221111 0111222 1222 234444321
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeEEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQFWF 445 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~f 445 (616)
+. .++.|+.+||+|++ ..|+| .|+|||++++.. ...+.|
T Consensus 325 ----------------g~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~----~g~l~i 379 (487)
T PRK07638 325 ----------------GE-----EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDE----EGFIYI 379 (487)
T ss_pred ----------------CC-----CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcC----CCeEEE
Confidence 12 34789999999975 24444 379999998873 568999
Q ss_pred EeecCceeeccceecCHHHHHHHHHH
Q 007149 446 VHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 446 ~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+||.+|++++.|+++++.+|+.++.+
T Consensus 380 ~GR~~d~i~~~G~~v~~~eiE~~l~~ 405 (487)
T PRK07638 380 VGREKNMILFGGINIFPEEIESVLHE 405 (487)
T ss_pred EecCCCeEEeCCEEECHHHHHHHHHh
Confidence 99999999999999999999999976
No 42
>PRK07470 acyl-CoA synthetase; Validated
Probab=99.02 E-value=5.1e-08 Score=108.91 Aligned_cols=62 Identities=16% Similarity=0.308 Sum_probs=52.9
Q ss_pred cCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||+|+. ..|+|. |+|||+.++.. ...+.+.||.++++++.|+++++.+||.+|
T Consensus 361 ~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l 436 (528)
T PRK07470 361 LPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDA----RGFLYITGRASDMYISGGSNVYPREIEEKL 436 (528)
T ss_pred CCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEcc----CCeEEEeCCccceEEeCCEEECHHHHHHHH
Confidence 5689999999975 345543 99999999873 568999999999999999999999999999
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
..
T Consensus 437 ~~ 438 (528)
T PRK07470 437 LT 438 (528)
T ss_pred Hh
Confidence 75
No 43
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.02 E-value=1.8e-08 Score=113.62 Aligned_cols=128 Identities=18% Similarity=0.250 Sum_probs=84.0
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+.++.+|+. ....+.+++.+ |++++ ..||+||+...+...... .+...++ ..|+ .-.+.++.+
T Consensus 327 lr~~~~gg~~~~~~~~~~~~~~~-g~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~~~~------- 395 (560)
T PRK08974 327 LKLSVGGGMAVQQAVAERWVKLT-GQYLL-EGYGLTECSPLVSVNPYDLDYYSGSIGL-PVPS-TEIKLVDDD------- 395 (560)
T ss_pred eeEEEecCccCCHHHHHHHHHHh-CCcEE-eeecccccCceeeccCCCCcccCCcccc-CcCC-CEEEEECCC-------
Confidence 667777765 23345555656 78888 899999985433211110 0011222 1122 223443321
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
. .++..|+.+||+|+. ..|+|. |+|||+++++. ...+.
T Consensus 396 -----------------~-----~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~ 449 (560)
T PRK08974 396 -----------------G-----NEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDE----EGFLR 449 (560)
T ss_pred -----------------C-----CCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcC----CceEE
Confidence 1 235678999999975 345543 99999999873 45899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.++++++.|+++++.+|+.+|.+
T Consensus 450 i~GR~~d~i~~~G~~i~~~~IE~~l~~ 476 (560)
T PRK08974 450 IVDRKKDMILVSGFNVYPNEIEDVVML 476 (560)
T ss_pred EEecccceEEeCCEEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 44
>PRK06839 acyl-CoA synthetase; Validated
Probab=99.01 E-value=2.7e-08 Score=109.73 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=52.7
Q ss_pred cCCCceeEEEEccc---cceec-------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||+|++. .|+|. |+|||+++.+. ...+.|+||.+++++..|+++++.+|+.++
T Consensus 338 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l 413 (496)
T PRK06839 338 VEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDE----DGFVYIVGRKKEMIISGGENIYPLEVEQVI 413 (496)
T ss_pred CCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcC----CCcEEEeccccceEEECCEEECHHHHHHHH
Confidence 57899999999864 34432 89999999973 458899999999999999999999999999
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 414 ~~ 415 (496)
T PRK06839 414 NK 415 (496)
T ss_pred Hh
Confidence 65
No 45
>PLN02246 4-coumarate--CoA ligase
Probab=99.01 E-value=3.8e-08 Score=110.39 Aligned_cols=131 Identities=13% Similarity=0.138 Sum_probs=83.9
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC-------CCCCCceeecCCceEEEEEeCCCC
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC-------KPSDVSYTLLPNMAYFEFLPVEKS 375 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~-------~~~~~~~~l~~~~~~~EFip~~~~ 375 (616)
.+..++.|+. ....+.+++.++++++. ..||+||+...+...... .+...+.. +++ .-.+.++++.
T Consensus 299 ~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~-~~~~i~d~~~- 374 (537)
T PLN02246 299 SIRMVLSGAAPLGKELEDAFRAKLPNAVLG-QGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTV-VRN-AELKIVDPET- 374 (537)
T ss_pred ceeEEEEecCcCCHHHHHHHHHHcCCCeEe-ccccccccCcccccccccCCCCccccCCccccc-cCC-cEEEEecCCC-
Confidence 3666677765 34456677777777777 899999984321100000 00111111 111 1222222111
Q ss_pred CCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee--------------ccccCCEEEEecccC
Q 007149 376 NGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHN 438 (616)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~ 438 (616)
...+..|+.+||+|+. +.|+| -|+|||++++..
T Consensus 375 ---------------------------~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~--- 424 (537)
T PLN02246 375 ---------------------------GASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDD--- 424 (537)
T ss_pred ---------------------------CCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeC---
Confidence 1235789999999974 34443 288999999883
Q ss_pred CCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 439 NAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 439 ~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
...+.|+||.++++++.|++++..+|+.++.+
T Consensus 425 -~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~ 456 (537)
T PLN02246 425 -DDELFIVDRLKELIKYKGFQVAPAELEALLIS 456 (537)
T ss_pred -CCeEEEEecccceEEECCEEECcHHHHHHHHh
Confidence 45899999999999999999999999999975
No 46
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=99.01 E-value=9.1e-09 Score=115.25 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=53.2
Q ss_pred cCCCceeEEEEcc---cccee-----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY-----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDL 465 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly-----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v 465 (616)
|+.|+.+||+|.. ..|+| -|+|||++++.. ...+.++||.++++++.|+++++.+|
T Consensus 379 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eI 454 (546)
T PRK08314 379 LPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE----EGYFFITDRLKRMINASGFKVWPAEV 454 (546)
T ss_pred CCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC----CCcEEEEecchhhEEeCCEEECHHHH
Confidence 5789999999964 34443 399999999873 46899999999999999999999999
Q ss_pred HHHHHHH
Q 007149 466 LKAVTEA 472 (616)
Q Consensus 466 ~~av~~a 472 (616)
|.+|.+.
T Consensus 455 E~~i~~~ 461 (546)
T PRK08314 455 ENLLYKH 461 (546)
T ss_pred HHHHHhC
Confidence 9999763
No 47
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=99.00 E-value=1.6e-08 Score=114.37 Aligned_cols=60 Identities=15% Similarity=0.319 Sum_probs=51.6
Q ss_pred CCceeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHH
Q 007149 408 LGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVT 470 (616)
Q Consensus 408 ~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~ 470 (616)
+|+.+||+|.. ..|+| -|+|||++++.. ...+.|+||.+++++++|+++++.+|+.++.
T Consensus 382 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~----dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 457 (563)
T PLN02860 382 SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDK----AGNLWLIGRSNDRIKTGGENVYPEEVEAVLS 457 (563)
T ss_pred CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcC----CCCEEEeecccceeEECCEEccHHHHHHHHH
Confidence 68999999975 34554 289999999973 5689999999999999999999999999997
Q ss_pred H
Q 007149 471 E 471 (616)
Q Consensus 471 ~ 471 (616)
+
T Consensus 458 ~ 458 (563)
T PLN02860 458 Q 458 (563)
T ss_pred h
Confidence 6
No 48
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=99.00 E-value=1.6e-08 Score=108.30 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=52.8
Q ss_pred cCCCceeEEEEcc---cccee----------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceec
Q 007149 406 VKLGHCYELVVTT---FTGLY----------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKT 460 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly----------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~ 460 (616)
+..|+.+||+|+. ..|+| .|+|||+..+.. ...+.|+||.++++++.|+++
T Consensus 313 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~----~g~~~~~gR~~~~i~~~G~~v 388 (408)
T TIGR01733 313 VPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLP----DGNLEFLGRIDDQVKIRGYRI 388 (408)
T ss_pred CCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcC----CCCEEEeeccCCEEEeCeEEe
Confidence 4678899999985 34444 599999999984 347999999999999999999
Q ss_pred CHHHHHHHHHH
Q 007149 461 NEEDLLKAVTE 471 (616)
Q Consensus 461 ~e~~v~~av~~ 471 (616)
++.+|+.++..
T Consensus 389 ~~~~ie~~l~~ 399 (408)
T TIGR01733 389 ELGEIEAALLR 399 (408)
T ss_pred chHHHHHHHhc
Confidence 99999999964
No 49
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=99.00 E-value=5.3e-08 Score=109.29 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=53.2
Q ss_pred cCCCceeEEEEccc---ccee------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVT 470 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~ 470 (616)
+..|+.+||+|+.. .|+| .|+|||+++++. ...+.|+||.+++++++|+|+.+.+|+.++.
T Consensus 385 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~ 460 (538)
T TIGR03208 385 LSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDA----EGYIRINGRSKDVIIRGGENIPVVEIENLLY 460 (538)
T ss_pred CcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECC----CCcEEEEeccCceEEECCEEECHHHHHHHHh
Confidence 46799999999753 4555 299999999973 4589999999999999999999999999996
Q ss_pred H
Q 007149 471 E 471 (616)
Q Consensus 471 ~ 471 (616)
+
T Consensus 461 ~ 461 (538)
T TIGR03208 461 Q 461 (538)
T ss_pred c
Confidence 5
No 50
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.99 E-value=4.2e-08 Score=119.54 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=54.4
Q ss_pred ccCCCceeEEEEcc---cccee-----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 405 NVKLGHCYELVVTT---FTGLY-----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 405 ev~~G~~yelVvTt---~~Gly-----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
++++|+.+||+|+. ..|+| .|+|||+++++. ...+.|+||.+|+++++|+++++.+
T Consensus 981 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~gR~~d~i~~~G~~v~~~e 1056 (1146)
T PRK08633 981 ELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDE----DGFLTITDRYSRFAKIGGEMVPLGA 1056 (1146)
T ss_pred cCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcC----CceEEEEecccchhhhCcEEECHHH
Confidence 45789999999974 34444 399999999983 5689999999999999999999999
Q ss_pred HHHHHHHH
Q 007149 465 LLKAVTEA 472 (616)
Q Consensus 465 v~~av~~a 472 (616)
||+++.+.
T Consensus 1057 iE~~l~~~ 1064 (1146)
T PRK08633 1057 VEEELAKA 1064 (1146)
T ss_pred HHHHHHhc
Confidence 99999763
No 51
>PLN02736 long-chain acyl-CoA synthetase
Probab=98.98 E-value=1.4e-08 Score=117.18 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEEccchh---chHHHHHhhcCCCCeeeccccccccceeecCCCC--CCCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSMA---QYIPILEFYSGGLPLVSTMYASSECYFGINFKPL--CKPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~~---~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++||.. ...+.++..+ |++++ .+||.||+...+..... ..+...+. .+|+. -...++.++.+
T Consensus 378 lr~~~~gGa~l~~~~~~~~~~~~-g~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~pg~-~v~i~d~~~~~----- 448 (651)
T PLN02736 378 VRFMSSGASPLSPDVMEFLRICF-GGRVL-EGYGMTETSCVISGMDEGDNLSGHVGS-PNPAC-EVKLVDVPEMN----- 448 (651)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHh-CCCeE-EEechHHhchheeccCCCCCCCCccCC-ccCce-EEEEEEccccC-----
Confidence 6666777753 3344555556 68887 99999998543321110 01111121 12322 23344422110
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
. ..+.+++..+||.|.. +.|+|. |+|||+++++. ...+.
T Consensus 449 ------------------~--~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~----dG~l~ 504 (651)
T PLN02736 449 ------------------Y--TSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP----GGRLK 504 (651)
T ss_pred ------------------c--ccCCCCCCCceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC----CCcEE
Confidence 0 0112344568999964 466653 89999999983 45899
Q ss_pred EEeecCceeec-cceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSI-DTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~-~gek~~e~~v~~av~~ 471 (616)
|+||.++++++ +|+++++.+||.++.+
T Consensus 505 i~GR~kd~ik~~~G~~V~p~eIE~~l~~ 532 (651)
T PLN02736 505 IIDRKKNIFKLAQGEYIAPEKIENVYAK 532 (651)
T ss_pred EEEechhheEcCCCcEechHHHHHHHhc
Confidence 99999999997 6999999999999966
No 52
>PRK08316 acyl-CoA synthetase; Validated
Probab=98.98 E-value=3.5e-08 Score=109.39 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=52.6
Q ss_pred cCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||++++. .|+| .|+|||+++++. ...+.++||.++++++.|+++++.+|+.++
T Consensus 362 ~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l 437 (523)
T PRK08316 362 VAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDE----EGYITVVDRKKDMIKTGGENVASREVEEAL 437 (523)
T ss_pred CCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcC----CceEEEecccccEEEeCCeEECHHHHHHHH
Confidence 45688999999763 4444 399999999973 468999999999999999999999999999
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 438 ~~ 439 (523)
T PRK08316 438 YT 439 (523)
T ss_pred Hh
Confidence 65
No 53
>PRK05852 acyl-CoA synthetase; Validated
Probab=98.97 E-value=7e-08 Score=108.18 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=84.2
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC----C---CCCCCceeecCCceEEEEEeCCCCC
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL----C---KPSDVSYTLLPNMAYFEFLPVEKSN 376 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~----~---~~~~~~~~l~~~~~~~EFip~~~~~ 376 (616)
+..+.+|+. ...++.+++.+ +++++ ..||.||+...+...+. + +....+.+-.+.....+.++.+
T Consensus 297 lr~i~~~G~~~~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~--- 371 (534)
T PRK05852 297 LRFIRSCSAPLTAETAQALQTEF-AAPVV-CAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSD--- 371 (534)
T ss_pred eeEEEECCCCCCHHHHHHHHHHh-CCChh-hccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCC---
Confidence 666666654 44556677777 68888 89999997432211100 0 0001122110112233333321
Q ss_pred CcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---cceec-------------cccCCEEEEecccCCC
Q 007149 377 GELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLYR-------------YRVGDILMVTGFHNNA 440 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~GlyR-------------Yr~GDvv~v~gf~~~~ 440 (616)
.+ ++++|+.+||+|+.. .|+|+ |+|||+.+++. .
T Consensus 372 ---------------------g~-----~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~----d 421 (534)
T PRK05852 372 ---------------------GL-----PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSA----A 421 (534)
T ss_pred ---------------------CC-----CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeC----C
Confidence 11 346899999999753 45543 89999999973 4
Q ss_pred CeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 441 PQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 441 P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
..+.|+||.+++++++|+++.+.+|+.++.+
T Consensus 422 G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~ 452 (534)
T PRK05852 422 GDLSIRGRIKELINRGGEKISPERVEGVLAS 452 (534)
T ss_pred CcEEEEecchhhEEECCEEECHHHHHHHHHh
Confidence 5899999999999999999999999999965
No 54
>PRK12583 acyl-CoA synthetase; Provisional
Probab=98.97 E-value=2e-07 Score=104.64 Aligned_cols=129 Identities=10% Similarity=0.070 Sum_probs=83.2
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC-----CCCCceeecCCceEEEEEeCCCCCCc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK-----PSDVSYTLLPNMAYFEFLPVEKSNGE 378 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~-----~~~~~~~l~~~~~~~EFip~~~~~~~ 378 (616)
+..++.|+. ....+.+.+.+++.++. ..||+||+....-....+. +...+. ..|+ ..++.++++ .
T Consensus 319 lr~i~~~G~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~-p~~~-~~~~i~d~~--~-- 391 (558)
T PRK12583 319 LRTGIMAGAPCPIEVMRRVMDEMHMAEVQ-IAYGMTETSPVSLQTTAADDLERRVETVGR-TQPH-LEVKVVDPD--G-- 391 (558)
T ss_pred heEEEecCCCCCHHHHHHHHHHcCCccee-ccccccccccceeccCcccccccccCCCCc-cCCC-CeEEEECCC--C--
Confidence 555555553 44456666777666777 8999999853221111100 011121 1222 234444322 0
Q ss_pred ccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---ccee--------------ccccCCEEEEecccCCCC
Q 007149 379 LTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLY--------------RYRVGDILMVTGFHNNAP 441 (616)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~Gly--------------RYr~GDvv~v~gf~~~~P 441 (616)
.+++.|+.+||+|++. .|+| .|+|||+++++. ..
T Consensus 392 -------------------------~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----dg 442 (558)
T PRK12583 392 -------------------------ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE----QG 442 (558)
T ss_pred -------------------------CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC----Cc
Confidence 2346899999999753 3443 289999999873 45
Q ss_pred eEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 442 QFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 442 ~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.+.|.||.++++++.|+++++.+|+.+|.+
T Consensus 443 ~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~ 472 (558)
T PRK12583 443 YVRIVGRSKDMIIRGGENIYPREIEEFLFT 472 (558)
T ss_pred cEEEEecccceeEECCEEeCHHHHHHHHHh
Confidence 899999999999999999999999999965
No 55
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=98.96 E-value=8.4e-09 Score=116.20 Aligned_cols=129 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+..+..|+. ....+++++.+ +++++ ..||+||+...+...+.. .+...+.. ++ ..-.+.++.+
T Consensus 328 ~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~p-~~-g~~v~i~d~~------ 397 (557)
T PRK07059 328 KLIVANGGGMAVQRPVAERWLEMT-GCPIT-EGYGLSETSPVATCNPVDATEFSGTIGLP-LP-STEVSIRDDD------ 397 (557)
T ss_pred hheEEEeccccCCHHHHHHHHHHh-CCCee-eccccccccchhhcCCCCCCCcCCcccCc-cC-CcEEEEECCC------
Confidence 3566667764 34455666666 78888 899999985433211110 01112221 12 2223333311
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---ccee--------------ccccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLY--------------RYRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~Gly--------------RYr~GDvv~v~gf~~~~P~ 442 (616)
.+ .+..|+.+||+|++. .|+| -|+|||++++.. ...
T Consensus 398 ------------------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~ 450 (557)
T PRK07059 398 ------------------GN-----DLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE----RGY 450 (557)
T ss_pred ------------------CC-----CCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcC----CCc
Confidence 12 246788999999752 3332 289999999873 458
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.|+||.++++++.|+++++.+|+.+|.+
T Consensus 451 ~~~~GR~~~~i~~~G~~i~p~~iE~~l~~ 479 (557)
T PRK07059 451 TKIVDRKKDMILVSGFNVYPNEIEEVVAS 479 (557)
T ss_pred EEEecccccceEECCEEEcHHHHHHHHHh
Confidence 99999999999999999999999999966
No 56
>PRK13383 acyl-CoA synthetase; Provisional
Probab=98.96 E-value=1.1e-07 Score=106.22 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=82.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++|+. ...++.+.+.+ +++++ +.||+||+.......+.. .+...+. ..|+ .-++.++.+
T Consensus 294 lr~i~~gG~~l~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~------- 362 (516)
T PRK13383 294 LRVVMSSGDRLDPTLGQRFMDTY-GDILY-NGYGSTEVGIGALATPADLRDAPETVGK-PVAG-CPVRILDRN------- 362 (516)
T ss_pred eEEEEECCCCCCHHHHHHHHHHc-Cchhh-hcccccccccceeccccccccCCCcccC-CCCC-cEEEEECCC-------
Confidence 666777765 33456666767 67777 999999985332111100 0011111 1111 123333211
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---ccee----------ccccCCEEEEecccCCCCeEEEEe
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLY----------RYRVGDILMVTGFHNNAPQFWFVH 447 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~Gly----------RYr~GDvv~v~gf~~~~P~i~f~g 447 (616)
.+ .+..|+.+||+|+.. .|++ .|+|||+.++.. ...+.++|
T Consensus 363 -----------------~~-----~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d~----~G~l~i~G 416 (516)
T PRK13383 363 -----------------NR-----PVGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLDN----AGRLFIVG 416 (516)
T ss_pred -----------------CC-----CCCCCCceEEEEecCcccccccCCchhheecCceecceeEEEcC----CccEEEec
Confidence 11 246788999999753 4444 477999999874 45899999
Q ss_pred ecCceeeccceecCHHHHHHHHHH
Q 007149 448 RKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 448 R~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|.++++++.|+++++.+|+.+|.+
T Consensus 417 R~~~~i~~~G~~v~~~eiE~~l~~ 440 (516)
T PRK13383 417 REDDMIISGGENVYPRAVENALAA 440 (516)
T ss_pred cccceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999965
No 57
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=98.96 E-value=2.8e-07 Score=104.27 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=52.7
Q ss_pred cCCCceeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
+..|+.+||+|+. ..|+| .|+|||++++.. ...+.|+||.++++++.|+++.+.+|+.+
T Consensus 407 ~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~----~G~l~i~GR~~~~i~~~G~~i~~~eIE~~ 482 (562)
T PRK12492 407 LPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDP----DGFVRIVDRKKDLIIVSGFNVYPNEIEDV 482 (562)
T ss_pred CCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECC----CCeEEEecccCCeEEECCEEECHHHHHHH
Confidence 4678899999975 34444 299999999984 45899999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+.+
T Consensus 483 l~~ 485 (562)
T PRK12492 483 VMA 485 (562)
T ss_pred HHh
Confidence 965
No 58
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=98.96 E-value=8.5e-08 Score=107.91 Aligned_cols=128 Identities=17% Similarity=0.287 Sum_probs=84.1
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccc-eeecCCCCCCC--------CCCceeecCCceEEEEEeCCC
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECY-FGINFKPLCKP--------SDVSYTLLPNMAYFEFLPVEK 374 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~-~~i~~~~~~~~--------~~~~~~l~~~~~~~EFip~~~ 374 (616)
+..+++|+. ...++.+++.+++++++ +.||+||+. +++. ...+. ...+.. +|+.. .+.++.+.
T Consensus 305 l~~i~~~g~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~--~~~~~~~~~~~~~~~vG~~-~~~~~-v~i~d~~~ 379 (546)
T PLN02330 305 LQAIMTAAAPLAPELLTAFEAKFPGVQVQ-EAYGLTEHSCITLT--HGDPEKGHGIAKKNSVGFI-LPNLE-VKFIDPDT 379 (546)
T ss_pred eeeEEEcCCcCCHHHHHHHHHHcCCCeEE-ecccccccccceec--CCCccccccccccCccccc-cCCcE-EEEEeCCC
Confidence 445556654 45567777778889998 999999973 3321 11110 011111 12211 33333221
Q ss_pred CCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee--------------ccccCCEEEEeccc
Q 007149 375 SNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFH 437 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~ 437 (616)
. ..+.+|+.+||+|+. ..|+| -|+|||++++..
T Consensus 380 -----------------------~-----~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~-- 429 (546)
T PLN02330 380 -----------------------G-----RSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDD-- 429 (546)
T ss_pred -----------------------C-----ccCCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeC--
Confidence 1 124679999999974 34443 289999999873
Q ss_pred CCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 438 NNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 438 ~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
...+.|+||.++++++.|+++++.+|+.++..
T Consensus 430 --dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 461 (546)
T PLN02330 430 --DGDIFIVDRIKELIKYKGFQVAPAELEAILLT 461 (546)
T ss_pred --CCcEEEEechHHhhhcCCEEECHHHHHHHHHh
Confidence 35799999999999999999999999999965
No 59
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.95 E-value=1.2e-08 Score=127.19 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=39.8
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|||||++++.. ...+.|+||.+++++++|++|.+.+||.+|.+
T Consensus 680 y~TGDlg~~~~----dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~ 722 (1389)
T TIGR03443 680 YRTGDLGRYLP----DGNVECCGRADDQVKIRGFRIELGEIDTHLSQ 722 (1389)
T ss_pred eecCCceeEcC----CCCEEEecccCCEEEeCcEEecHHHHHHHHHh
Confidence 99999999873 46899999999999999999999999999976
No 60
>PRK13382 acyl-CoA synthetase; Provisional
Probab=98.94 E-value=2.4e-07 Score=104.23 Aligned_cols=128 Identities=12% Similarity=0.127 Sum_probs=83.5
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC---CCCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL---CKPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~---~~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..++.|+. ...+..+++.+ +.+++ ++||+||+.......+. ..+...|. ..++ .-++.++.+
T Consensus 314 lr~i~~gG~~l~~~~~~~~~~~~-~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~-p~~~-~~~~i~d~~------- 382 (537)
T PRK13382 314 LRFAAASGSRMRPDVVIAFMDQF-GDVIY-NNYNATEAGMIATATPADLRAAPDTAGR-PAEG-TEIRILDQD------- 382 (537)
T ss_pred eeEEEEcCCCCCHHHHHHHHHHc-CCcEE-ecccccccCcceecChhHhccCCCCccc-cCcC-cEEEEECCC-------
Confidence 566666664 44566677777 56777 99999998532211110 00011111 1122 223344321
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---cce----------eccccCCEEEEecccCCCCeEEEEe
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGL----------YRYRVGDILMVTGFHNNAPQFWFVH 447 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~Gl----------yRYr~GDvv~v~gf~~~~P~i~f~g 447 (616)
. ..+..|+.+||+|++. .|+ -.|+|||++++.. ...+.|+|
T Consensus 383 -----------------~-----~~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~G 436 (537)
T PRK13382 383 -----------------F-----REVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLDE----NGRLFVVG 436 (537)
T ss_pred -----------------C-----CCCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEeC----CCcEEEec
Confidence 1 2346799999999763 332 2589999999974 45799999
Q ss_pred ecCceeeccceecCHHHHHHHHHH
Q 007149 448 RKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 448 R~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|.++++++.|+++++.+|+.+|.+
T Consensus 437 R~dd~ik~~G~~v~~~eIE~~l~~ 460 (537)
T PRK13382 437 RDDEMIVSGGENVYPIEVEKTLAT 460 (537)
T ss_pred cccceeEECCEEECHHHHHHHHHh
Confidence 999999999999999999999965
No 61
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=98.94 E-value=9.6e-08 Score=106.90 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=83.0
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC---CCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+.++++|+. ......+++.+ |++++ ..||+||+.+...--... .....+..+.++ ...+.++.+
T Consensus 300 ~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~-~~v~i~d~~------ 370 (527)
T TIGR02275 300 SLKLLQVGGAKFSEAAARRVPAVF-GCQLQ-QVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPD-DEVRVVDDH------ 370 (527)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHh-CCeEE-eeeccCccCccccCCCCccccccccCCCCCCCC-ceEEEECCC------
Confidence 3667777765 33445556666 68888 999999975432110000 000112211111 112222211
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~ 442 (616)
.+ .++.|+.+||+|+. ..|+|. |+|||+.+++. ...
T Consensus 371 ------------------g~-----~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~----~g~ 423 (527)
T TIGR02275 371 ------------------GN-----PVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTP----EGY 423 (527)
T ss_pred ------------------CC-----CCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcC----Ccc
Confidence 12 24679999999974 345442 99999999973 557
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.++||.+++++++|+++++.+|+++|.+
T Consensus 424 l~~~gR~~d~i~~~G~~v~~~eiE~~l~~ 452 (527)
T TIGR02275 424 IVVVGRAKDQINRGGEKIAAEEIENLLLA 452 (527)
T ss_pred EEEEecccceeecCCEEECHHHHHHHHHh
Confidence 99999999999999999999999999975
No 62
>PLN03051 acyl-activating enzyme; Provisional
Probab=98.94 E-value=4.2e-08 Score=109.45 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=40.1
Q ss_pred ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 424 RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 424 RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|+|||++++.. ...+.|+||.+++|+++|++|++.|||.+|.+
T Consensus 358 ~~~TGDlg~~d~----dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~ 401 (499)
T PLN03051 358 LRRHGDIMKRTP----GGYFCVQGRADDTMNLGGIKTSSVEIERACDR 401 (499)
T ss_pred eeecCCeEEECC----CCcEEEEeccCCEEeeCCEECCHHHHHHHHHh
Confidence 389999999873 55899999999999999999999999999975
No 63
>PRK13388 acyl-CoA synthetase; Provisional
Probab=98.94 E-value=1.9e-07 Score=105.33 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=79.9
Q ss_pred hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcC-CCCCCCCC
Q 007149 316 AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCN-GISDQDCQ 394 (616)
Q Consensus 316 ~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~-~~~~~~~~ 394 (616)
....+.+.+.+ +++++ +.||+||+...+...+..++...+..+ |+ .+++..+.... |. ++-+
T Consensus 277 ~~~~~~~~~~~-~~~l~-~~YG~tE~~~~~~~~~~~~~~~vG~p~-~g---~~i~~~~~~~~-------~~~~~~d---- 339 (540)
T PRK13388 277 PRDIAEFSRRF-GCQVE-DGYGSSEGAVIVVREPGTPPGSIGRGA-PG---VAIYNPETLTE-------CAVARFD---- 339 (540)
T ss_pred HHHHHHHHHHh-CCcee-cccccccccceeecCCCCCCCCCCCCC-CC---cEEEcCCCCcc-------ccceecc----
Confidence 34455666666 68888 999999985433222222222334332 33 34443222110 00 0000
Q ss_pred CCCcceeeccccCCCceeEEEEc-c---cccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccc
Q 007149 395 HDETEIVDLTNVKLGHCYELVVT-T---FTGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDT 457 (616)
Q Consensus 395 ~~~~~~v~l~ev~~G~~yelVvT-t---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~g 457 (616)
++++.+ ...|+.+||+++ . +.|+| .|+|||+++++. ...+.++||.+++++++|
T Consensus 340 -~~g~~~----~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~----dg~l~i~GR~~d~i~~~G 410 (540)
T PRK13388 340 -AHGALL----NADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDA----DGWIYFAGRTADWMRVDG 410 (540)
T ss_pred -Cccccc----cCCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcC----CCcEEEeccCCceEEECC
Confidence 001111 134678999997 3 24555 499999999973 457999999999999999
Q ss_pred eecCHHHHHHHHHH
Q 007149 458 DKTNEEDLLKAVTE 471 (616)
Q Consensus 458 ek~~e~~v~~av~~ 471 (616)
+++++.+|+.+|.+
T Consensus 411 ~~v~p~eIE~~l~~ 424 (540)
T PRK13388 411 ENLSAAPIERILLR 424 (540)
T ss_pred EEeCHHHHHHHHHh
Confidence 99999999999876
No 64
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=98.94 E-value=7.9e-08 Score=113.03 Aligned_cols=59 Identities=17% Similarity=0.369 Sum_probs=49.3
Q ss_pred CceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEEEeecCceeec-cceecCHHHHHHHHH
Q 007149 409 GHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSI-DTDKTNEEDLLKAVT 470 (616)
Q Consensus 409 G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~-~gek~~e~~v~~av~ 470 (616)
+..+||+|.. +.|+|+ |+|||+++++. ...+.|+||.++++++ .||+|++.+||.++.
T Consensus 539 ~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~----dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~ 614 (746)
T PTZ00342 539 LPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK----NGSLTFLDRSKGLVKLSQGEYIETDMLNNLYS 614 (746)
T ss_pred CCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC----CCeEEEEccCCCeEEeCCCEEEchHHHHHHHh
Confidence 3468999853 467664 99999999983 5699999999999996 699999999999986
Q ss_pred H
Q 007149 471 E 471 (616)
Q Consensus 471 ~ 471 (616)
+
T Consensus 615 ~ 615 (746)
T PTZ00342 615 Q 615 (746)
T ss_pred c
Confidence 5
No 65
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=98.93 E-value=2.6e-07 Score=102.36 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=82.5
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC---CCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK---PSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+.+|+. ....+.++..+++++++ ..||.||+.......+... +...+- .+|+. ....++.+
T Consensus 276 l~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~-~~~~~-~~~i~~~~------- 345 (515)
T TIGR03098 276 LRYLTNSGGAMPRATLSRLRSFLPNARLF-LMYGLTEAFRSTYLPPEEVDRRPDSIGK-AIPNA-EVLVLRED------- 345 (515)
T ss_pred eEEEEecCCcCCHHHHHHHHHHCCCCeEe-eeeccccccceEecccccccCCCCCcce-ecCCC-EEEEECCC-------
Confidence 556666653 44556677777778888 9999999843222111100 011111 12221 22333211
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee-------------------------ccccCCEEE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY-------------------------RYRVGDILM 432 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly-------------------------RYr~GDvv~ 432 (616)
.+ .+..|+.+||++.+ ..|+| .|+|||+++
T Consensus 346 -----------------~~-----~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~ 403 (515)
T TIGR03098 346 -----------------GS-----ECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVR 403 (515)
T ss_pred -----------------CC-----CCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEE
Confidence 11 23568889999864 24443 378999999
Q ss_pred EecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 433 VTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 433 v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.. ...+.+.||.+|++++.|+++++.+|+.++..
T Consensus 404 ~~~----~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~ 438 (515)
T TIGR03098 404 RDE----EGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYA 438 (515)
T ss_pred EcC----CceEEEEeccccceecCCEEeCHHHHHHHHhc
Confidence 863 45789999999999999999999999999965
No 66
>PLN02614 long-chain acyl-CoA synthetase
Probab=98.93 E-value=6.4e-08 Score=112.36 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=53.3
Q ss_pred cCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeec-cceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSI-DTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~-~gek~~e~~v~~a 468 (616)
+..|+.+||+|.. +.|+|+ |+|||+++++. ...+.|+||.+|++++ .||+|++.+||.+
T Consensus 463 ~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~----dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~ 538 (666)
T PLN02614 463 LASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQP----NGSMKIIDRKKNIFKLSQGEYVAVENIENI 538 (666)
T ss_pred CCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcC----CCCEEEEEcchhceecCCCeeecHHHHHHH
Confidence 4678999999964 467775 99999999983 4589999999999996 6999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+.+
T Consensus 539 l~~ 541 (666)
T PLN02614 539 YGE 541 (666)
T ss_pred Hhc
Confidence 865
No 67
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.93 E-value=6.5e-08 Score=109.15 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=84.2
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCC---CCCCCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKP---LCKPSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~---~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++|+. ......+++.+ +++++ +.||+||+........ ...+...+ +.+|+.. .+.++++.
T Consensus 325 lr~v~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~~-~~i~~~~~------ 394 (563)
T PRK06710 325 IRACISGSAPLPVEVQEKFETVT-GGKLV-EGYGLTESSPVTHSNFLWEKRVPGSIG-VPWPDTE-AMIMSLET------ 394 (563)
T ss_pred hhheeeCCCcCCHHHHHHHHHhh-CCCEe-cccccccCccccccCcccccccCCccC-CCCCCCe-EEEEECCC------
Confidence 455556654 33445666666 68888 8999999843211000 00011111 2233322 33443222
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---cceec-------------cccCCEEEEecccCCCCeEE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLYR-------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~GlyR-------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
. ..+..|+.+||+|+.. .|+|. |+|||++..+. ...+.
T Consensus 395 -----------------~-----~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~~~ 448 (563)
T PRK06710 395 -----------------G-----EALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDE----DGFFY 448 (563)
T ss_pred -----------------C-----ccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcC----CCcEE
Confidence 1 1246789999999753 45554 99999998873 45899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
++||.+++++++|+++++.+|+.++.+.
T Consensus 449 ~~GR~dd~i~~~G~~v~p~eiE~~l~~~ 476 (563)
T PRK06710 449 VKDRKKDMIVASGFNVYPREVEEVLYEH 476 (563)
T ss_pred EeeccccEEEECCEEECHHHHHHHHHhC
Confidence 9999999999999999999999999763
No 68
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.92 E-value=4.2e-07 Score=102.06 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=53.2
Q ss_pred cCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||+++.. .|+| .|+|||++++.. ...+.|+||.++++++.|+++++.+|+.+|
T Consensus 381 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l 456 (545)
T PRK07768 381 LPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTE----EGEVVVCGRVKDVIIMAGRNIYPTDIERAA 456 (545)
T ss_pred CCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEec----CCEEEEEccccceEEECCEecCHHHHHHHH
Confidence 56889999999752 3443 399999999873 458999999999999999999999999999
Q ss_pred HHH
Q 007149 470 TEA 472 (616)
Q Consensus 470 ~~a 472 (616)
.+.
T Consensus 457 ~~~ 459 (545)
T PRK07768 457 ARV 459 (545)
T ss_pred HhC
Confidence 774
No 69
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=98.92 E-value=3.8e-08 Score=110.58 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=52.9
Q ss_pred cCCCceeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
+..|+.+||+|+. ..|+| -|+|||+.+.+. ...+.|+||.+++++++|+++++.+|+.+
T Consensus 375 ~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~----~G~l~~~gR~~d~i~~~G~~v~~~eiE~~ 450 (536)
T PRK10946 375 LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP----DGYITVVGREKDQINRGGEKIAAEEIENL 450 (536)
T ss_pred CCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC----CCcEEEeccccceeecCCEEEcHHHHHHH
Confidence 5689999999964 35554 299999999983 45799999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
|..
T Consensus 451 l~~ 453 (536)
T PRK10946 451 LLR 453 (536)
T ss_pred HHh
Confidence 975
No 70
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=98.91 E-value=1.1e-07 Score=111.04 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=81.3
Q ss_pred EEEEEccchhch---HHHHHhhcCCCCeeeccccccccceeecCCCCC--CCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSMAQY---IPILEFYSGGLPLVSTMYASSECYFGINFKPLC--KPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~~~y---~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++||...- .+.++..+ |++++ .+||.||+..++...... .+...|- .+|+ .-...+++++.+
T Consensus 422 lr~i~~GGapl~~~~~~~~~~~~-g~~v~-~~YG~TEt~~~~~~~~~~~~~~gsvG~-p~p~-~evkivd~~~~~----- 492 (696)
T PLN02387 422 IRFMLSGGAPLSGDTQRFINICL-GAPIG-QGYGLTETCAGATFSEWDDTSVGRVGP-PLPC-CYVKLVSWEEGG----- 492 (696)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCCee-EeechhhcccceeecCcccCCCCccCC-CCCc-eEEEEeeccccC-----
Confidence 677788875332 23333445 78988 999999985432211110 0111121 1222 233444432211
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee------------------ccccCCEEEEecccCCC
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY------------------RYRVGDILMVTGFHNNA 440 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly------------------RYr~GDvv~v~gf~~~~ 440 (616)
..+. -+++..+||+|.. +.|+| -|+|||+.++.. .
T Consensus 493 -----------------~~~~---~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~----d 548 (696)
T PLN02387 493 -----------------YLIS---DKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP----D 548 (696)
T ss_pred -----------------cccC---CCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECC----C
Confidence 0110 0234457999963 46665 489999999973 5
Q ss_pred CeEEEEeecCceeec-cceecCHHHHHHHHHH
Q 007149 441 PQFWFVHRKNVILSI-DTDKTNEEDLLKAVTE 471 (616)
Q Consensus 441 P~i~f~gR~~~~l~~-~gek~~e~~v~~av~~ 471 (616)
..+.|+||.++++++ .||+|++.+||.++.+
T Consensus 549 G~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~ 580 (696)
T PLN02387 549 GCLEIIDRKKDIVKLQHGEYVSLGKVEAALSV 580 (696)
T ss_pred CcEEEEEcccceEECCCCeEEchHHHHHHHhc
Confidence 689999999999998 5999999999999865
No 71
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=3.2e-08 Score=111.87 Aligned_cols=130 Identities=18% Similarity=0.292 Sum_probs=86.1
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC----CCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK----PSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~----~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
+.++++|+. ....+++++.++..+++ .+||.||+...+...+..+ ....+. ..|+ .-...++.+.
T Consensus 293 lr~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~-~~pg-~~v~Ivd~~~----- 364 (534)
T COG0318 293 LRLVLSGGAPLPPELLERFEERFGPIAIL-EGYGLTETSPVVTINPPDDLLAKPGSVGR-PLPG-VEVRIVDPDG----- 364 (534)
T ss_pred eEEEEecCCcCCHHHHHHHHHHhCCCceE-EeecccccCceeecCCCchhhhcCCcccc-cCCC-cEEEEEeCCC-----
Confidence 888888886 45667777788667777 9999999953322111111 111111 1121 1111111111
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEc---cccceec--------------cccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVT---TFTGLYR--------------YRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvT---t~~GlyR--------------Yr~GDvv~v~gf~~~~P~ 442 (616)
. ++.+|+.+||+|. -..|+|+ |+|||+.++.. ...
T Consensus 365 -------------------~-----~~~pg~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~----~G~ 416 (534)
T COG0318 365 -------------------G-----EVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDE----DGY 416 (534)
T ss_pred -------------------C-----ccCCCCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcC----Ccc
Confidence 1 1233888999995 2456552 89999998884 478
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+.|+||.+|+|+..||++++.+||.++.+.
T Consensus 417 l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~ 446 (534)
T COG0318 417 LYIVGRLKDLIISGGENIYPEEIEAVLAEH 446 (534)
T ss_pred EEEEeccceEEEeCCeEECHHHHHHHHHhC
Confidence 999999999999999999999999999874
No 72
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=98.90 E-value=1.4e-07 Score=106.43 Aligned_cols=131 Identities=13% Similarity=0.184 Sum_probs=88.2
Q ss_pred ceEEEEEccch---hchHHHHHhhcCCCCeeeccccccccc--eeecCCCCC-CCCCCceeecCCceEEEEEeCCCCCCc
Q 007149 305 KYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECY--FGINFKPLC-KPSDVSYTLLPNMAYFEFLPVEKSNGE 378 (616)
Q Consensus 305 ~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~--~~i~~~~~~-~~~~~~~~l~~~~~~~EFip~~~~~~~ 378 (616)
+.+..+.+|+. ..-.+++++.+|...+. .+||.||.. ++++.+... .++..|.. ++ +.-=.+..+. +
T Consensus 299 ~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~~-~~--g~~~~v~~e~-g-- 371 (537)
T KOG1176|consen 299 SSLRSVLSGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGRL-LP--GVRVKVLDET-G-- 371 (537)
T ss_pred CccEEEEecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCcc-cc--ceEEEeeCCC-C--
Confidence 33555534443 45567777888656666 999999995 455655442 23334442 23 2111122221 1
Q ss_pred ccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCC
Q 007149 379 LTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAP 441 (616)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P 441 (616)
. ++.+++.+||++-. ..|+|. |+|||+--++ ...
T Consensus 372 --------------------~-----~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D----~DG 422 (537)
T KOG1176|consen 372 --------------------V-----SLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFD----EDG 422 (537)
T ss_pred --------------------C-----CCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEc----CCC
Confidence 1 23578889999953 477665 9999995555 578
Q ss_pred eEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 442 QFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 442 ~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.+.+++|.+|+|+..|+++++.|||++|..
T Consensus 423 ~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~ 452 (537)
T KOG1176|consen 423 YLYIVDRSKDLIKYGGEQVSPAEIEAVLLT 452 (537)
T ss_pred eEEEecchhhheeeCCEEeCHHHHHHHHHh
Confidence 999999999999999999999999999976
No 73
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=98.90 E-value=4.5e-07 Score=100.88 Aligned_cols=129 Identities=12% Similarity=0.129 Sum_probs=84.5
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCC---CCCCCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKP---LCKPSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~---~~~~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+..+++|+. ...++.+++.+ +++++ ..||+||+....-..+ ...+...+. ..|+. -++.++.+
T Consensus 272 ~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~------ 341 (509)
T PRK12406 272 SLRHVIHAAAPCPADVKRAMIEWW-GPVIY-EYYGSTESGAVTFATSEDALSHPGTVGK-AAPGA-ELRFVDED------ 341 (509)
T ss_pred ceeEEEEcCCCCCHHHHHHHHHHc-CCcEE-eeccccccCceEecCcccccccCCCcCc-cCCCc-EEEEECCC------
Confidence 3666676664 45566777777 67777 8999999843211110 011112222 22322 23333321
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcccc----ceec-------------cccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTFT----GLYR-------------YRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~~----GlyR-------------Yr~GDvv~v~gf~~~~P~ 442 (616)
. ..+..|+.+||+++... |++. |+|||++++.. ...
T Consensus 342 ------------------~-----~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~ 394 (509)
T PRK12406 342 ------------------G-----RPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDA----DGY 394 (509)
T ss_pred ------------------C-----CCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcC----Cce
Confidence 1 12468999999997531 4442 88999999873 458
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.++||.+++++++|+++++.+|+.+|.+
T Consensus 395 ~~~~GR~~d~ik~~G~~v~~~~IE~~l~~ 423 (509)
T PRK12406 395 LFLCDRKRDMVISGGVNIYPAEIEAVLHA 423 (509)
T ss_pred EEEeecccceEEECCEEECHHHHHHHHHh
Confidence 89999999999999999999999999975
No 74
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=98.89 E-value=4.7e-08 Score=111.39 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=51.7
Q ss_pred cccCCCceeEEEEc-----ccccee-------------------ccccCCEEEEecccCCCCeEEEEeecCceeecccee
Q 007149 404 TNVKLGHCYELVVT-----TFTGLY-------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDK 459 (616)
Q Consensus 404 ~ev~~G~~yelVvT-----t~~Gly-------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek 459 (616)
.++..|+.+|+++. .+.|+. -|+|||++++.. ...+.|+||.+++++++|++
T Consensus 396 ~~~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~----dG~l~~~GR~~d~ik~~G~~ 471 (600)
T PRK08279 396 IKVKPGEVGLLIGRITDRGPFDGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDG----FGHAQFVDRLGDTFRWKGEN 471 (600)
T ss_pred ccCCCCCceeEEEEecCcccccccCCchhhHHHHhhcccCCCCceEeecceEEEcC----CccEEEecccCCeEEECCcc
Confidence 35678999999842 223321 189999999883 45899999999999999999
Q ss_pred cCHHHHHHHHHH
Q 007149 460 TNEEDLLKAVTE 471 (616)
Q Consensus 460 ~~e~~v~~av~~ 471 (616)
+++.+||++|.+
T Consensus 472 i~p~eIE~~l~~ 483 (600)
T PRK08279 472 VATTEVENALSG 483 (600)
T ss_pred cCHHHHHHHHhc
Confidence 999999999976
No 75
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.88 E-value=4.6e-08 Score=120.99 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=53.6
Q ss_pred cCCCceeEEEEcc---cccee--------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNE 462 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e 462 (616)
|..|+.+||+|+. ..|+| -|||||++++.. ...+.|+||.+++++++|+++..
T Consensus 797 ~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~----~G~l~~~GR~d~~ik~~G~ri~~ 872 (1296)
T PRK10252 797 VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLD----DGAVEYLGRSDDQLKIRGQRIEL 872 (1296)
T ss_pred CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcC----CCcEEEecccCCeEEEeeEEecH
Confidence 5689999999975 24443 299999999983 46899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007149 463 EDLLKAVTEA 472 (616)
Q Consensus 463 ~~v~~av~~a 472 (616)
.+|+.+|.+.
T Consensus 873 ~eIE~~l~~~ 882 (1296)
T PRK10252 873 GEIDRAMQAL 882 (1296)
T ss_pred HHHHHHHHhC
Confidence 9999999763
No 76
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=98.88 E-value=7.5e-08 Score=108.47 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=52.9
Q ss_pred cCCCceeEEEEccc---cceec--------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt~---~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
+..|+.+||+|++. .|+|. |+|||+++++. ...+.++||.++++++.|+++.+.+|+.+
T Consensus 403 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~i~GR~~d~i~~~G~~v~p~eiE~~ 478 (560)
T PRK08751 403 LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDE----QGFVYIVDRKKDMILVSGFNVYPNEIEDV 478 (560)
T ss_pred CCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcC----CceEEEEeechhheeECCEEEcHHHHHHH
Confidence 46788999999753 44432 89999999873 56899999999999999999999999999
Q ss_pred HHHH
Q 007149 469 VTEA 472 (616)
Q Consensus 469 v~~a 472 (616)
|.+.
T Consensus 479 l~~~ 482 (560)
T PRK08751 479 IAMM 482 (560)
T ss_pred HHhC
Confidence 9663
No 77
>PRK12467 peptide synthase; Provisional
Probab=98.87 E-value=7e-08 Score=130.94 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=53.2
Q ss_pred cCCCceeEEEEcc---ccceec---------------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecC
Q 007149 406 VKLGHCYELVVTT---FTGLYR---------------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTN 461 (616)
Q Consensus 406 v~~G~~yelVvTt---~~GlyR---------------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~ 461 (616)
|..|+.|||+|+. ..|+|+ |||||+++... ...++|+||.+++++++|+++.
T Consensus 849 vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~----dG~l~~~GR~d~~vki~G~rI~ 924 (3956)
T PRK12467 849 VPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRA----DGVIEYLGRMDHQVKIRGFRIE 924 (3956)
T ss_pred CCCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcC----CCcEEEeccccCeEEECCEecC
Confidence 5789999999964 244442 99999999973 5689999999999999999999
Q ss_pred HHHHHHHHHH
Q 007149 462 EEDLLKAVTE 471 (616)
Q Consensus 462 e~~v~~av~~ 471 (616)
..+|+.+|.+
T Consensus 925 ~~eIE~~L~~ 934 (3956)
T PRK12467 925 LGEIEARLLA 934 (3956)
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 78
>PRK07787 acyl-CoA synthetase; Validated
Probab=98.87 E-value=1.1e-07 Score=104.89 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=80.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC--CCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC--KPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+. ....+.+++.+ +++++ ..||.||+.+.+...... .+...+. .+++ .-...+..+
T Consensus 243 l~~~~~gg~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~vG~-~~~g-~~~~i~d~~-------- 310 (471)
T PRK07787 243 ARLLVSGSAALPVPVFDRLAALT-GHRPV-ERYGMTETLITLSTRADGERRPGWVGL-PLAG-VETRLVDED-------- 310 (471)
T ss_pred eeEEEECCCCCCHHHHHHHHHHc-CCCee-cccCccccCcceecCCCCcccCCcccc-cCCC-cEEEEECCC--------
Confidence 566667764 34456667767 67888 999999986533111110 0011121 1122 112222211
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCc-eeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGH-CYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~-~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i 443 (616)
.+++. ..|+ .+||+|+. ..|+| -|+|||+..+. ....+
T Consensus 311 ----------------~~~~~----~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~----~dg~l 366 (471)
T PRK07787 311 ----------------GGPVP----HDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVD----PDGMH 366 (471)
T ss_pred ----------------CCCCC----CCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEc----CCCCE
Confidence 11221 1233 68999975 34554 29999999986 34589
Q ss_pred EEEeec-CceeeccceecCHHHHHHHHHH
Q 007149 444 WFVHRK-NVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 444 ~f~gR~-~~~l~~~gek~~e~~v~~av~~ 471 (616)
.++||. +++++++|+|+++.+|+.+|..
T Consensus 367 ~~~GR~~d~~i~~~G~~v~~~eIE~~l~~ 395 (471)
T PRK07787 367 RIVGRESTDLIKSGGYRIGAGEIETALLG 395 (471)
T ss_pred EEeCCCCceeEeeCCEEECHHHHHHHHHh
Confidence 999996 8999999999999999999975
No 79
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=98.86 E-value=4.1e-07 Score=106.36 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=39.8
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
|+|||+.++.. ...+.|+||.+|++++.|+++++.+||.++...
T Consensus 593 ~~TGDlg~~d~----dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~ 636 (718)
T PRK08043 593 YDTGDIVRFDE----QGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGV 636 (718)
T ss_pred EecCCEEEEcC----CCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhC
Confidence 89999999973 558999999999999999999999999998663
No 80
>PRK12467 peptide synthase; Provisional
Probab=98.85 E-value=8.9e-08 Score=129.96 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=54.2
Q ss_pred ccCCCceeEEEEcc---ccceec---------------------cccCCEEEEecccCCCCeEEEEeecCceeeccceec
Q 007149 405 NVKLGHCYELVVTT---FTGLYR---------------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKT 460 (616)
Q Consensus 405 ev~~G~~yelVvTt---~~GlyR---------------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~ 460 (616)
.|.+|+.|||.|.. ..|+|. |||||++++.. ...++|+||++++++++|.++
T Consensus 3429 ~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~----dG~l~~~GR~d~~iki~G~rI 3504 (3956)
T PRK12467 3429 PVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA----DGVIEYLGRIDHQVKIRGFRI 3504 (3956)
T ss_pred CCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecC----CCcEEEeccccceEeeceEee
Confidence 35789999999964 355542 99999999973 568999999999999999999
Q ss_pred CHHHHHHHHHH
Q 007149 461 NEEDLLKAVTE 471 (616)
Q Consensus 461 ~e~~v~~av~~ 471 (616)
...|||.+|.+
T Consensus 3505 e~~EIE~~l~~ 3515 (3956)
T PRK12467 3505 ELGEIEARLLQ 3515 (3956)
T ss_pred cHHHHHHHHhh
Confidence 99999999976
No 81
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.84 E-value=8.3e-08 Score=110.19 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=53.7
Q ss_pred cccCCCceeEEEEcc---cccee-------------------------------ccccCCEEEEecccCCCCeEEEEeec
Q 007149 404 TNVKLGHCYELVVTT---FTGLY-------------------------------RYRVGDILMVTGFHNNAPQFWFVHRK 449 (616)
Q Consensus 404 ~ev~~G~~yelVvTt---~~Gly-------------------------------RYr~GDvv~v~gf~~~~P~i~f~gR~ 449 (616)
.+|+.|+.+||+|.. ..|+| -|||||+.++. ...+.|+||.
T Consensus 411 ~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-----dG~l~i~GR~ 485 (631)
T PRK07769 411 SELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-----DGELYITGRV 485 (631)
T ss_pred cCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-----CCEEEEEccc
Confidence 356789999999964 34443 28999999885 3589999999
Q ss_pred CceeeccceecCHHHHHHHHHHH
Q 007149 450 NVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 450 ~~~l~~~gek~~e~~v~~av~~a 472 (616)
+++|+++|+++++.|||.+|.+.
T Consensus 486 ~d~Ik~~G~~V~p~eIE~~l~~~ 508 (631)
T PRK07769 486 KDLVIIDGRNHYPQDLEYTAQEA 508 (631)
T ss_pred ccEEEECCeeeCHHHHHHHHHhc
Confidence 99999999999999999999763
No 82
>PRK08315 AMP-binding domain protein; Validated
Probab=98.84 E-value=5.5e-07 Score=101.28 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=51.9
Q ss_pred cCCCceeEEEEccc---ccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
+..|+.+||+|... .|+| .|+|||+++... ...+.|+||.++++++.|+++...+|+.+
T Consensus 393 ~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~~~~~GR~d~~i~~~G~~v~~~eIE~~ 468 (559)
T PRK08315 393 VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE----EGYVNIVGRIKDMIIRGGENIYPREIEEF 468 (559)
T ss_pred CCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC----CceEEEEeeccceEEECCEEEcHHHHHHH
Confidence 46789999999653 3333 499999999863 45899999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+.+
T Consensus 469 l~~ 471 (559)
T PRK08315 469 LYT 471 (559)
T ss_pred HHh
Confidence 976
No 83
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=98.83 E-value=6.2e-07 Score=97.25 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=49.8
Q ss_pred ceeEEEEccc---cceec-------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 410 HCYELVVTTF---TGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 410 ~~yelVvTt~---~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.+||+|++. .|+|+ |+|||++++.+ ...+.++||.+|++++.|++++..+|+.++..
T Consensus 291 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 291 GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDG----EGFLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcC----CCCEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 6689999863 44443 89999999984 46899999999999999999999999999965
No 84
>PRK05857 acyl-CoA synthetase; Validated
Probab=98.83 E-value=8.2e-07 Score=100.05 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=53.5
Q ss_pred ccCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 405 NVKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 405 ev~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
.++.|+.+||+|+.. .|+| -|+|||++++. ....+.|+||.+++++++|+++++.+|+.+
T Consensus 368 ~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d----~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~ 443 (540)
T PRK05857 368 AGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERR----EDGFFYIKGRSSEMIICGGVNIAPDEVDRI 443 (540)
T ss_pred cCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEc----CCceEEEeccccccEecCCEEECHHHHHHH
Confidence 456788999999863 4554 39999999986 356899999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+..
T Consensus 444 l~~ 446 (540)
T PRK05857 444 AEG 446 (540)
T ss_pred HHh
Confidence 965
No 85
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.82 E-value=4.1e-07 Score=100.14 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=52.8
Q ss_pred cCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||+|++. .|++ .|+|||++++.. ...+.|.||.++++++.|++++..+|+.++
T Consensus 327 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~----~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i 402 (483)
T PRK03640 327 VPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDE----EGFLYVLDRRSDLIISGGENIYPAEIEEVL 402 (483)
T ss_pred CCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcC----CCCEEEeecccCeEEeCCEEECHHHHHHHH
Confidence 57899999999863 3332 489999999874 457999999999999999999999999999
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
..
T Consensus 403 ~~ 404 (483)
T PRK03640 403 LS 404 (483)
T ss_pred Hh
Confidence 65
No 86
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=98.82 E-value=7.7e-08 Score=111.53 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeec-cceecCHHHHHHHH
Q 007149 407 KLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSI-DTDKTNEEDLLKAV 469 (616)
Q Consensus 407 ~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~-~gek~~e~~v~~av 469 (616)
..|..+||.|.. +.|+|. |+|||+++++. ...+.|+||.+|+|++ +||+|++.+||.++
T Consensus 461 ~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~----dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l 536 (660)
T PLN02861 461 SDVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQP----NGAMKIIDRKKNIFKLSQGEYVAVENLENTY 536 (660)
T ss_pred CCCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECC----CCcEEEEeccccceEcCCCeEEcHHHHHHHH
Confidence 345678999953 577775 99999999983 5689999999999997 79999999999998
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 537 ~~ 538 (660)
T PLN02861 537 SR 538 (660)
T ss_pred hc
Confidence 65
No 87
>PRK06188 acyl-CoA synthetase; Validated
Probab=98.82 E-value=5.8e-07 Score=100.37 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=52.7
Q ss_pred cCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||+|++. .|+| .|+|||+.+... ...+.|+||.++++++.|+++++.+|+.++
T Consensus 360 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l 435 (524)
T PRK06188 360 VAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDE----DGFYYIVDRKKDMIVTGGFNVFPREVEDVL 435 (524)
T ss_pred CCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcC----CccEEEEeccccceecCCEEECHHHHHHHH
Confidence 57899999999863 4443 499999999873 458999999999999999999999999988
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 436 ~~ 437 (524)
T PRK06188 436 AE 437 (524)
T ss_pred Hh
Confidence 65
No 88
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=98.81 E-value=1.3e-07 Score=106.13 Aligned_cols=62 Identities=10% Similarity=0.189 Sum_probs=53.0
Q ss_pred cCCCceeEEEEcc---ccceec---------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLYR---------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 406 v~~G~~yelVvTt---~~GlyR---------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
|..|+.+||+|+. ..|+|. |+|||++++. ...+.|+||.++++++.|+++++.+||.+|.+.
T Consensus 367 ~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~-----~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 367 VAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV-----DGGLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred CCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE-----CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 6789999999975 356653 9999999874 247999999999999999999999999999763
No 89
>PRK05850 acyl-CoA synthetase; Validated
Probab=98.81 E-value=7.3e-07 Score=101.02 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=53.4
Q ss_pred cccCCCceeEEEEcc---cccee-------------------------ccccCCEEEEecccCCCCeEEEEeecCceeec
Q 007149 404 TNVKLGHCYELVVTT---FTGLY-------------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSI 455 (616)
Q Consensus 404 ~ev~~G~~yelVvTt---~~Gly-------------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~ 455 (616)
.+++.|+.+||.|.. ..|+| -|+|||+.++. ...+.|+||.++++++
T Consensus 390 ~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-----~G~l~~~GR~~d~i~~ 464 (578)
T PRK05850 390 IECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-----EGELFIVGRIKDLLIV 464 (578)
T ss_pred cCCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-----CCEEEEEcccccEEEE
Confidence 346789999999965 23443 39999998764 2489999999999999
Q ss_pred cceecCHHHHHHHHHHH
Q 007149 456 DTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 456 ~gek~~e~~v~~av~~a 472 (616)
+|+++++.+||.+|.+.
T Consensus 465 ~G~~i~p~eIE~~l~~~ 481 (578)
T PRK05850 465 DGRNHYPDDIEATIQEI 481 (578)
T ss_pred CCeecCHHHHHHHHHHh
Confidence 99999999999999764
No 90
>PRK08308 acyl-CoA synthetase; Validated
Probab=98.80 E-value=6.6e-07 Score=97.20 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=50.4
Q ss_pred CCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 408 LGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 408 ~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|+.+|+++++..| +|+|||++++.. ...+.|+||.++++++.|+++++.+|+.++.+
T Consensus 278 ~~~~gel~v~~~~~--~~~TGDl~~~~~----dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~ 335 (414)
T PRK08308 278 ENAPEEIVVKMGDK--EIFTKDLGYKSE----RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLR 335 (414)
T ss_pred CCCCceEEEEcCCc--eEECCceEEECC----CccEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 46678999998766 478999999873 45899999999999999999999999999976
No 91
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=98.79 E-value=2e-07 Score=104.78 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred cCCCceeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
|+.|+.+||+|.. ..|+| -|+|||++++.. ...+.|+||.+++++++|+++++.+|+.+
T Consensus 376 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~~~G~~v~p~~iE~~ 451 (547)
T PRK06087 376 LPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE----AGYIKITGRKKDIIVRGGENISSREVEDI 451 (547)
T ss_pred CcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC----CCCEEEEecchhhhhcCCEEECHHHHHHH
Confidence 4678899999854 23332 289999999873 56789999999999999999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
|..
T Consensus 452 l~~ 454 (547)
T PRK06087 452 LLQ 454 (547)
T ss_pred HHh
Confidence 965
No 92
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.79 E-value=1e-06 Score=93.65 Aligned_cols=44 Identities=11% Similarity=0.065 Sum_probs=39.5
Q ss_pred ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 424 RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 424 RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+|+|||++++. ...+.|+||.+|+++++|+++++.+|+.+|.+.
T Consensus 235 ~~~TGDl~~~~-----~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 235 WFRTDDLGALD-----DGVLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred ceecccEEEEe-----CCEEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 79999999983 348999999999999999999999999999763
No 93
>PRK12316 peptide synthase; Provisional
Probab=98.79 E-value=4e-08 Score=135.60 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=53.6
Q ss_pred cCCCceeEEEEcc---cccee--------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNE 462 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e 462 (616)
|..|+.+||+|.. ..|++ -|+|||+++... ...+.|+||.+++++++|++|.+
T Consensus 846 ~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~----dG~l~~~GR~d~~ik~~G~rI~~ 921 (5163)
T PRK12316 846 VPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRA----DGVIEYAGRIDHQVKLRGLRIEL 921 (5163)
T ss_pred CCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECC----CCCEEeecccCCEEEEceEEcCh
Confidence 5789999999964 34443 299999999984 56899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007149 463 EDLLKAVTEA 472 (616)
Q Consensus 463 ~~v~~av~~a 472 (616)
.|||.+|.+.
T Consensus 922 ~EIE~~l~~~ 931 (5163)
T PRK12316 922 GEIEARLLEH 931 (5163)
T ss_pred HHHHHHHHhC
Confidence 9999999763
No 94
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.78 E-value=1.2e-06 Score=97.21 Aligned_cols=129 Identities=12% Similarity=0.113 Sum_probs=83.0
Q ss_pred CceEEEEEccch---hchHHHHHhhcCCCCeeeccccccccce-eecCCCCC---CCCCCceeecCCceEEEEEeCCCCC
Q 007149 304 TKYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYF-GINFKPLC---KPSDVSYTLLPNMAYFEFLPVEKSN 376 (616)
Q Consensus 304 l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~-~i~~~~~~---~~~~~~~~l~~~~~~~EFip~~~~~ 376 (616)
+..+.+++.|+. ...++.+++.+ +.+++ ..||+||+.. .+ ....+ .+...+..+ .+-++.++.+
T Consensus 261 ~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~-~~yG~tE~~~~~~-~~~~~~~~~~~~~G~~~---~~~~~i~d~~--- 331 (502)
T PRK08276 261 VSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIH-EYYASSEGGGVTV-ITSEDWLAHPGSVGKAV---LGEVRILDED--- 331 (502)
T ss_pred cccceEEEecCCCCCHHHHHHHHHHh-CcHhh-hhcccccccceeE-ecCccccccCCCcceec---ccEEEEECCC---
Confidence 345777777775 34456666667 56666 8999999843 21 11111 001112211 1122222211
Q ss_pred CcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc---ccee--------------ccccCCEEEEecccCC
Q 007149 377 GELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF---TGLY--------------RYRVGDILMVTGFHNN 439 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~---~Gly--------------RYr~GDvv~v~gf~~~ 439 (616)
.. .+..|+.+||+++.. .|+| .|+|||++++..
T Consensus 332 ---------------------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~---- 381 (502)
T PRK08276 332 ---------------------GN-----ELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE---- 381 (502)
T ss_pred ---------------------CC-----CCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC----
Confidence 11 246789999999832 2332 378999999973
Q ss_pred CCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 440 APQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 440 ~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
...+.++||.+++++++|+++++.+|+.++.+
T Consensus 382 ~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~ 413 (502)
T PRK08276 382 DGYLYLTDRKSDMIISGGVNIYPQEIENLLVT 413 (502)
T ss_pred CcCEEEeccCcceEEeCCEEeCHHHHHHHHHh
Confidence 45899999999999999999999999999975
No 95
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.78 E-value=8e-07 Score=100.84 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=39.4
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+|||++++.. ...+.|+||.++++++.|+++++.+|+.++.+
T Consensus 432 ~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 432 LRTGDVGSVTR----DGFLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred EecCceEEEcC----CceEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 89999999873 45899999999999999999999999999975
No 96
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=98.77 E-value=5.3e-08 Score=111.11 Aligned_cols=133 Identities=19% Similarity=0.354 Sum_probs=96.9
Q ss_pred EEEEEccchhchHHHHHhhcC-CCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhc
Q 007149 307 IEVIVTGSMAQYIPILEFYSG-GLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQC 385 (616)
Q Consensus 307 i~~~~~G~~~~y~~~l~~~~~-~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~ 385 (616)
+...++||++.-.+.++++.. |+++. .+||.||..-++..++ |. .|.+ .+
T Consensus 355 i~~~~sGGa~l~~~~~~f~~~lGi~i~-eGYGlTEts~~~~v~~---~~-------------~~~~-gt----------- 405 (613)
T COG1022 355 IRYALSGGAPLSPELLHFFRSLGIPIL-EGYGLTETSAVVSVNP---PD-------------RFVL-GT----------- 405 (613)
T ss_pred EEEEEecCCcCCHHHHHHHHHcCCCeE-EEecccccccceEEcc---cc-------------Cccc-CC-----------
Confidence 677788887655555554432 69999 9999999865543332 11 1111 11
Q ss_pred CCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEEEee
Q 007149 386 NGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHR 448 (616)
Q Consensus 386 ~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR 448 (616)
-+.+++-.|++.++.+||.|.+ +.|+|. |+|||+..++. ...+.++||
T Consensus 406 -----------vG~p~p~~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~----~g~L~i~gR 470 (613)
T COG1022 406 -----------VGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE----DGYLVITGR 470 (613)
T ss_pred -----------cCCcCCCceEEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC----CCcEEEeec
Confidence 1467777889999999999975 689998 99999999994 479999999
Q ss_pred cCceeecc-ceecCHHHHHHHHHHHHhhccccCCEEEeEEEeec
Q 007149 449 KNVILSID-TDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYAD 491 (616)
Q Consensus 449 ~~~~l~~~-gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~ 491 (616)
+++++... ||++.++.||..+.+ .-.|...+++.+
T Consensus 471 kK~~i~l~~GknIaP~~IE~~l~~--------~~~I~qi~vvg~ 506 (613)
T COG1022 471 KKELIKLSNGKNIAPEPIESKLAK--------SPLIEQICVVGD 506 (613)
T ss_pred ccceEECCCCcccChHHHHHHHhc--------CCCeeEEEEEec
Confidence 99988865 899999999997754 223445566554
No 97
>PRK09192 acyl-CoA synthetase; Validated
Probab=98.76 E-value=2.1e-06 Score=97.57 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=53.0
Q ss_pred ccCCCceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 405 NVKLGHCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 405 ev~~G~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
++..|+.+||+|+. ..|+| .|+|||++.+. ...+.|+||.+|+++++|+++++.+||.+
T Consensus 405 ~~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~~-----~G~l~~~GR~dd~i~~~G~~v~p~eIE~~ 479 (579)
T PRK09192 405 PLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYLL-----DGYLYITGRAKDLIIINGRNIWPQDIEWI 479 (579)
T ss_pred CCCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeEE-----CCEEEEEeccccEEEECCCccCHHHHHHH
Confidence 35678999999975 34555 38999999773 35899999999999999999999999999
Q ss_pred HHHH
Q 007149 469 VTEA 472 (616)
Q Consensus 469 v~~a 472 (616)
|.+.
T Consensus 480 l~~~ 483 (579)
T PRK09192 480 AEQE 483 (579)
T ss_pred HHhc
Confidence 9874
No 98
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=98.75 E-value=1.7e-06 Score=96.23 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=52.1
Q ss_pred cCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
+..|+.+||+|+.. .|+| .|+|||+.+... ...+.|+||.++++++.|+++++.+|+.+|
T Consensus 351 ~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l 426 (508)
T TIGR02262 351 VAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRND----DGSYTYAGRTDDMLKVSGIYVSPFEIESAL 426 (508)
T ss_pred CCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcC----CccEEEeccccceeeeCCEEECHHHHHHHH
Confidence 46788999999853 4443 379999988862 458999999999999999999999999999
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 427 ~~ 428 (508)
T TIGR02262 427 IQ 428 (508)
T ss_pred Hh
Confidence 76
No 99
>PRK12316 peptide synthase; Provisional
Probab=98.75 E-value=4e-07 Score=125.98 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=53.3
Q ss_pred ccCCCceeEEEEcc---cccee---------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceec
Q 007149 405 NVKLGHCYELVVTT---FTGLY---------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKT 460 (616)
Q Consensus 405 ev~~G~~yelVvTt---~~Gly---------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~ 460 (616)
.|+.|+.+||.|.. ..|+| -|||||++++.. ...+.|+||.+++++++|+++
T Consensus 2339 ~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~----dG~l~~~GR~d~~iki~G~ri 2414 (5163)
T PRK12316 2339 LLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRA----DGVVEYLGRIDHQVKIRGFRI 2414 (5163)
T ss_pred CCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcC----CCcEEEecCCCCeEEEcCccC
Confidence 35789999999953 24443 299999999973 568999999999999999999
Q ss_pred CHHHHHHHHHH
Q 007149 461 NEEDLLKAVTE 471 (616)
Q Consensus 461 ~e~~v~~av~~ 471 (616)
...|||.+|.+
T Consensus 2415 e~~eIE~~l~~ 2425 (5163)
T PRK12316 2415 ELGEIEARLQA 2425 (5163)
T ss_pred ChHHHHHHHhh
Confidence 99999999976
No 100
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=98.75 E-value=1.2e-06 Score=97.42 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=51.6
Q ss_pred cCCCceeEEEEccc------ccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHH
Q 007149 406 VKLGHCYELVVTTF------TGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDL 465 (616)
Q Consensus 406 v~~G~~yelVvTt~------~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v 465 (616)
+..|+.+||+++.. .|+| -|+|||+..++. ...+.|+||.++++++.|+++++.+|
T Consensus 361 ~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~i~p~~i 436 (517)
T PRK08008 361 LPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE----EGFFYFVDRRCNMIKRGGENVSCVEL 436 (517)
T ss_pred CCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC----CCcEEEeecccceEEeCCEEECHHHH
Confidence 46799999999842 2332 289999988873 46899999999999999999999999
Q ss_pred HHHHHH
Q 007149 466 LKAVTE 471 (616)
Q Consensus 466 ~~av~~ 471 (616)
+.++..
T Consensus 437 E~~l~~ 442 (517)
T PRK08008 437 ENIIAT 442 (517)
T ss_pred HHHHHh
Confidence 999965
No 101
>PLN03052 acetate--CoA ligase; Provisional
Probab=98.74 E-value=2.3e-06 Score=100.65 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=39.5
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|++||+++++. ...+.|+||.+++||++|+++...||+.+|..
T Consensus 591 ~~tGDl~~~d~----dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~ 633 (728)
T PLN03052 591 RRHGDIFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERVCNA 633 (728)
T ss_pred EecCceEEECC----CCeEEEEecCCCEEeeCCEEeCHHHHHHHHHh
Confidence 89999999983 46899999999999999999999999999864
No 102
>PRK06178 acyl-CoA synthetase; Validated
Probab=98.73 E-value=1.1e-06 Score=99.32 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=51.6
Q ss_pred cCCCceeEEEEccc---ccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAV 469 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av 469 (616)
|..|+.+||+|+.. .|+| .|+|||++++.+ ...+.|+||.+++++++|+++++.+|+.++
T Consensus 409 ~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~----~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l 484 (567)
T PRK06178 409 LPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDE----QGFLHYLGRRKEMLKVNGMSVFPSEVEALL 484 (567)
T ss_pred CCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEEec----CCeEEEEecccccEEECCEEECHHHHHHHH
Confidence 46788899999642 3332 389999999873 457999999999999999999999999998
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 485 ~~ 486 (567)
T PRK06178 485 GQ 486 (567)
T ss_pred Hh
Confidence 65
No 103
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.73 E-value=4e-07 Score=111.50 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=49.3
Q ss_pred CCceeEEEEccc---ccee--------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHH
Q 007149 408 LGHCYELVVTTF---TGLY--------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVT 470 (616)
Q Consensus 408 ~G~~yelVvTt~---~Gly--------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~ 470 (616)
.|+.+||.|... .|+| .|+|||+++++. ...+.|+||.+|+++++|+++++.+||+++.
T Consensus 978 ~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~ 1053 (1140)
T PRK06814 978 IDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDE----EGFITIKGRAKRFAKIAGEMISLAAVEELAA 1053 (1140)
T ss_pred CCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECC----CCeEEEEecccCeeeeCCEEECHHHHHHHHH
Confidence 356678887542 3332 599999999973 5689999999999999999999999999987
Q ss_pred H
Q 007149 471 E 471 (616)
Q Consensus 471 ~ 471 (616)
+
T Consensus 1054 ~ 1054 (1140)
T PRK06814 1054 E 1054 (1140)
T ss_pred h
Confidence 6
No 104
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=98.73 E-value=2.3e-07 Score=107.67 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeec-cceecCHHHHHHHH
Q 007149 407 KLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSI-DTDKTNEEDLLKAV 469 (616)
Q Consensus 407 ~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~-~gek~~e~~v~~av 469 (616)
..|..+||+|.. +.|+|. |+|||+++++. ...+.|+||.++++++ .||+|++++||.++
T Consensus 461 ~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~----dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l 536 (660)
T PLN02430 461 GEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILP----NGVLKIIDRKKNLIKLSQGEYVALEYLENVY 536 (660)
T ss_pred CCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECC----CCcEEEEEcccccEEcCCCcEEchHHHHHHH
Confidence 445678999964 467764 99999999973 4589999999999997 69999999999988
Q ss_pred HH
Q 007149 470 TE 471 (616)
Q Consensus 470 ~~ 471 (616)
.+
T Consensus 537 ~~ 538 (660)
T PLN02430 537 GQ 538 (660)
T ss_pred hc
Confidence 55
No 105
>PLN03102 acyl-activating enzyme; Provisional
Probab=98.73 E-value=2.3e-07 Score=105.64 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=51.0
Q ss_pred CceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 409 GHCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 409 G~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+.+||+|+. +.|+| +|+|||++++. ....+.|+||.++++++.|+++++.+|+.++.+
T Consensus 390 ~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d----~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~ 464 (579)
T PLN03102 390 KTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIH----PDGHVEIKDRSKDIIISGGENISSVEVENVLYK 464 (579)
T ss_pred CCceEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEc----CCCeEEEEeccCcEEEECCEEECHHHHHHHHHh
Confidence 3579999975 46665 59999999987 356899999999999999999999999999976
No 106
>PRK05691 peptide synthase; Validated
Probab=98.72 E-value=4.1e-07 Score=124.58 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=53.0
Q ss_pred cCCCceeEEEEcc---ccceec---------------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecC
Q 007149 406 VKLGHCYELVVTT---FTGLYR---------------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTN 461 (616)
Q Consensus 406 v~~G~~yelVvTt---~~GlyR---------------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~ 461 (616)
|..|..+||+|.. ..|++. |||||++++.. ...|+|+||.+++++++|.+|.
T Consensus 4061 ~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l~~~GR~d~qvki~G~rie 4136 (4334)
T PRK05691 4061 VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRS----DGVLEYVGRIDHQVKIRGYRIE 4136 (4334)
T ss_pred CCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecC----CCcEEEecccCCcEEeceEEec
Confidence 5789999999964 244432 99999999973 5589999999999999999999
Q ss_pred HHHHHHHHHH
Q 007149 462 EEDLLKAVTE 471 (616)
Q Consensus 462 e~~v~~av~~ 471 (616)
..|||.+|.+
T Consensus 4137 l~eIE~~l~~ 4146 (4334)
T PRK05691 4137 LGEIEARLHE 4146 (4334)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 107
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.71 E-value=1.6e-06 Score=97.52 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=48.4
Q ss_pred ceeEEEEcc---ccceec----------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 410 HCYELVVTT---FTGLYR----------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 410 ~~yelVvTt---~~GlyR----------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.+||+++. ..|+|. |+|||+++... ...+.|+||.++++++.|+|+++.+|+.++..
T Consensus 383 ~~Gei~v~g~~~~~gy~~~~~~~~~~g~~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 383 AFGDLQVRGPWVIDRYFRGDASPLVDGWFPTGDVATIDA----DGFMQITDRSKDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred cceEEEEeCCccchhhcCChhhhhcCCCcccCceEEEcC----CCcEEEeecccCEEEeCCeEEcHHHHHHHHHh
Confidence 458999985 234432 99999999874 45899999999999999999999999999865
No 108
>PRK05691 peptide synthase; Validated
Probab=98.70 E-value=6.1e-07 Score=122.92 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=83.6
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC-CCCC---CCceeecCCceEEEEEeCCCCCCcc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL-CKPS---DVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~-~~~~---~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
+..++.||. ....+.+.+.+++++++ +.||.||+.+.+..... ..+. ..|. .+++.. ...++.+
T Consensus 1390 lr~~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~-p~~~~~-~~i~d~~------ 1460 (4334)
T PRK05691 1390 LRRLFSGGEALPAELRNRVLQRLPQVQLH-NRYGPTETAINVTHWQCQAEDGERSPIGR-PLGNVL-CRVLDAE------ 1460 (4334)
T ss_pred ccEEEEeecCCCHHHHHHHHHhCCCcEEE-eCCCcChheeeeeeeecccccCCCCcccc-eeCCCE-EEEECCC------
Confidence 555666664 33445566677788888 99999998654321110 0000 0111 112211 1122110
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee---------------------ccccCCEEEEec
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY---------------------RYRVGDILMVTG 435 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly---------------------RYr~GDvv~v~g 435 (616)
. ..|..|+.+||+|.. ..|++ -|||||++++..
T Consensus 1461 ------------------~-----~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~ 1517 (4334)
T PRK05691 1461 ------------------L-----NLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA 1517 (4334)
T ss_pred ------------------C-----CCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC
Confidence 1 235789999999963 23332 289999999983
Q ss_pred ccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 436 FHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 436 f~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
...+.|+||.+++++++|+++...+||.+|.+
T Consensus 1518 ----dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~ 1549 (4334)
T PRK05691 1518 ----DGALEYLGRLDQQVKLRGFRVEPEEIQARLLA 1549 (4334)
T ss_pred ----CCCEEEecccCcEEEECCEEcCHHHHHHHHHh
Confidence 56899999999999999999999999999976
No 109
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=98.69 E-value=8.5e-08 Score=104.02 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=55.1
Q ss_pred ccCCCceeEEEE---ccccceec--------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHH
Q 007149 405 NVKLGHCYELVV---TTFTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLK 467 (616)
Q Consensus 405 ev~~G~~yelVv---Tt~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~ 467 (616)
+++.|..+||.+ +|..|+|- |+|||+.++.- ...+++|||.+|||..+||++.+.|||+
T Consensus 426 ~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----nG~i~iVGRskdmI~rGGENVyP~ElE~ 501 (596)
T KOG1177|consen 426 EVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----NGTIEIVGRSKDMIIRGGENVYPTELED 501 (596)
T ss_pred ccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----CCcEEEEEcccCeEEeCCcccChHHHHH
Confidence 457788899999 46677776 99999999984 5689999999999999999999999999
Q ss_pred HHHH
Q 007149 468 AVTE 471 (616)
Q Consensus 468 av~~ 471 (616)
.+.+
T Consensus 502 fL~~ 505 (596)
T KOG1177|consen 502 FLNK 505 (596)
T ss_pred HHhh
Confidence 9876
No 110
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=98.68 E-value=2.1e-07 Score=100.34 Aligned_cols=119 Identities=20% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCceEEEEEccc-h-hchHHHHHhhcCCCCeeeccccccccce-eecCC-CCC--CCCCCceeecCCceEEEEEeCCC
Q 007149 301 WPRTKYIEVIVTGS-M-AQYIPILEFYSGGLPLVSTMYASSECYF-GINFK-PLC--KPSDVSYTLLPNMAYFEFLPVEK 374 (616)
Q Consensus 301 WP~l~~i~~~~~G~-~-~~y~~~l~~~~~~~~~~~~~y~asE~~~-~i~~~-~~~--~~~~~~~~l~~~~~~~EFip~~~ 374 (616)
++.++.+.+ +|+ + ....+.+++.++..+++ ..||+||+.. +.... ... .+...+ ..+| ..-++.+++++
T Consensus 276 l~~lr~v~~--~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G-~~~~-~~~~~ivd~~~ 350 (417)
T PF00501_consen 276 LSSLRTVIS--GGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPGSVG-KPLP-GVEVKIVDPNT 350 (417)
T ss_dssp GTT-SEEEE--ESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTTSEB-EEST-TEEEEEECTTT
T ss_pred ccccccccc--ccccCChhhccccccccccccce-ecccccccceeeeccccccccccccccc-cccc-ccccccccccc
Confidence 445554333 333 2 55667888888665777 9999999944 33110 111 111122 2334 44556665432
Q ss_pred CCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEeccc
Q 007149 375 SNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFH 437 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~ 437 (616)
.++ ++.|+.+||+|+. ..|+|+ |||||++++..
T Consensus 351 -----------------------~~~-----~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~-- 400 (417)
T PF00501_consen 351 -----------------------GEP-----LPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDE-- 400 (417)
T ss_dssp -----------------------SSB-----ESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEET--
T ss_pred -----------------------ccc-----ccccccccccccCCccceeeeccccccccccccccceecceEEEECC--
Confidence 123 3689999999984 355544 99999999983
Q ss_pred CCCCeEEEEeecCceeecc
Q 007149 438 NNAPQFWFVHRKNVILSID 456 (616)
Q Consensus 438 ~~~P~i~f~gR~~~~l~~~ 456 (616)
...+.++||.+++|+++
T Consensus 401 --~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 401 --DGYLYILGRSDDMIKVR 417 (417)
T ss_dssp --TSEEEEEEEGSCEEEET
T ss_pred --CCeEEEEEeeCCEEEeC
Confidence 46999999999999874
No 111
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=98.63 E-value=9e-07 Score=101.54 Aligned_cols=64 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEEEeecCceeec-cceecC--HHHHHH
Q 007149 408 LGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSI-DTDKTN--EEDLLK 467 (616)
Q Consensus 408 ~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~-~gek~~--e~~v~~ 467 (616)
.|..+||+|.. +.|+|. |+|||+.++.+-......+.|+||.++++++ +|++++ +.+++.
T Consensus 408 ~~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~ 487 (614)
T PRK08180 408 VGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARA 487 (614)
T ss_pred CCCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHH
Confidence 35667888853 355542 8999999995210123468999999888875 699877 777777
Q ss_pred HHHH
Q 007149 468 AVTE 471 (616)
Q Consensus 468 av~~ 471 (616)
++..
T Consensus 488 ~l~~ 491 (614)
T PRK08180 488 VSAG 491 (614)
T ss_pred Hhhc
Confidence 7643
No 112
>PRK12582 acyl-CoA synthetase; Provisional
Probab=98.60 E-value=1.1e-06 Score=100.86 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEEEeecCceeec-cceecCHHHHH
Q 007149 407 KLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSI-DTDKTNEEDLL 466 (616)
Q Consensus 407 ~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~-~gek~~e~~v~ 466 (616)
..|+.+||+|.. ..|+|. |+|||+.++..-.+....+.|+||.++++++ +|+|+++.++|
T Consensus 419 ~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE 496 (624)
T PRK12582 419 PVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLR 496 (624)
T ss_pred cCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHH
Confidence 568889999964 456653 9999999984211123478999999999986 69999988885
No 113
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=98.60 E-value=4e-06 Score=94.35 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=48.4
Q ss_pred ceeEEEEcc---ccceec-----------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 410 HCYELVVTT---FTGLYR-----------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 410 ~~yelVvTt---~~GlyR-----------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
..+||++.. ..|+|. |+|||++++.. ...+.|+||.+++++++|+|+++.+|+.++.+
T Consensus 383 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 454 (542)
T PRK06018 383 TFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGDVATIDA----YGYMRITDRSKDVIKSGGEWISSIDLENLAVG 454 (542)
T ss_pred ceeEEEEecCCcchhhhcCcccEecCCcEEEcCCEEEEcC----CccEEEEecCCCeEEECCEEECHHHHHHHHHh
Confidence 568999963 345553 99999998863 45899999999999999999999999998865
No 114
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=98.51 E-value=5.1e-06 Score=94.70 Aligned_cols=232 Identities=18% Similarity=0.172 Sum_probs=135.3
Q ss_pred ceEEEEEccch---hchHHHHHhhcCCCCeeeccccccccc-eeecCCCCC-CCCCCceeecCCce-EEEEEeCCCCCCc
Q 007149 305 KYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECY-FGINFKPLC-KPSDVSYTLLPNMA-YFEFLPVEKSNGE 378 (616)
Q Consensus 305 ~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~-~~i~~~~~~-~~~~~~~~l~~~~~-~~EFip~~~~~~~ 378 (616)
+.|.++.+++. ..-.+.+.+.++.-||. +.|+.||+. .-+.-.+.- |. ..++.-.|..+ .++-+++ +
T Consensus 359 ~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~-e~~~qtEtG~~~i~~~~g~~p~-~pg~~~~p~~g~~v~i~de-~---- 431 (626)
T KOG1175|consen 359 KSLRTCGSVGEPINPEAWEWWKRVTGLDPIY-ETYGQTETGGICITPKPGKLPI-KPGSAGKPFPGYDVQILDE-N---- 431 (626)
T ss_pred ceEEEEeecCccCCcchHHHHHHhcCccchh-hceeeeccCceeeeccCCCCCc-CccccCCCCCCcceEEECC-C----
Confidence 55777777764 33335566777444677 999999983 222211211 11 12222233333 2222222 1
Q ss_pred ccchhhcCCCCCCCCCCCCcceeeccccCCC-ceeEEEEcc------ccceec----------------cccCCEEEEec
Q 007149 379 LTQEFQCNGISDQDCQHDETEIVDLTNVKLG-HCYELVVTT------FTGLYR----------------YRVGDILMVTG 435 (616)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G-~~yelVvTt------~~GlyR----------------Yr~GDvv~v~g 435 (616)
+. +++.+ +.+||+++. ..++|+ |.|||-.+.+
T Consensus 432 -------------------g~-----~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd- 486 (626)
T KOG1175|consen 432 -------------------GN-----ELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRD- 486 (626)
T ss_pred -------------------CC-----CcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceEEecCceEEc-
Confidence 11 22333 788999963 233333 9999999998
Q ss_pred ccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceE-EEEEEEeecCCCCCC
Q 007149 436 FHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHY-VVFWELKSKGSNNLS 514 (616)
Q Consensus 436 f~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y-~l~~ele~~~~~~~~ 514 (616)
+...|++.||.+|+||+.|-+++..||+.||.+.-. |.|=+|+.......|.- ..|+-+.. +.
T Consensus 487 ---~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~--------VaEsAvVg~p~~~~ge~v~aFvvl~~-g~---- 550 (626)
T KOG1175|consen 487 ---EDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPA--------VAESAVVGSPDPIKGEVVLAFVVLKS-GS---- 550 (626)
T ss_pred ---CCceEEEEecccccccccceeecHHHHHHHHhhCcc--------hhheeeecCCCCCCCeEEEEEEEEcC-CC----
Confidence 578999999999999999999999999999965321 23444332211123332 35666643 32
Q ss_pred CCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEE-c---CCCcHHHHHHHHHhcCCCCCCccCCcccCCHHHHHH
Q 007149 515 ELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRV-V---KDGTFDALMDFSVSQGSSVNQYKTPRCIKSEEAINL 590 (616)
Q Consensus 515 ~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~-v---~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~ 590 (616)
. +. +++.++|-..+ |.+.|-+.-|+..+ | |.=...+.++..+.+-.+.-|++-.-.+.|+++++.
T Consensus 551 ~-~~---~~L~kel~~~V-------R~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~~~~d~st~~dp~v~~~ 619 (626)
T KOG1175|consen 551 H-DP---EQLTKELVKHV-------RSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGKAVGDTSTLADPSVIDH 619 (626)
T ss_pred C-Ch---HHHHHHHHHHH-------HhhcCcccccceeEecCCCCccccchhHHHHHHHHhccCccccccccCChHHHHH
Confidence 2 22 33344555555 54444444444433 3 333445566666654333338888899999999999
Q ss_pred Hhccc
Q 007149 591 LDSKV 595 (616)
Q Consensus 591 L~~~~ 595 (616)
+.+.+
T Consensus 620 ~~~~~ 624 (626)
T KOG1175|consen 620 LRSIL 624 (626)
T ss_pred HHHhh
Confidence 88753
No 115
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.45 E-value=3.4e-06 Score=102.43 Aligned_cols=144 Identities=11% Similarity=0.165 Sum_probs=87.2
Q ss_pred eEEEEEccch-hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhh
Q 007149 306 YIEVIVTGSM-AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQ 384 (616)
Q Consensus 306 ~i~~~~~G~~-~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~ 384 (616)
.+..+++|++ ....+++.+.+|+++++ +.||.||+.+.+...+...+...|. .+|+..-++..+.+....+.
T Consensus 721 slr~~~g~gl~~~l~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~svG~-p~pg~~~v~i~~~d~~~g~l----- 793 (994)
T PRK07868 721 PVRLFIGSGMPTGLWERVVEAFAPAHVV-EFFATTDGQAVLANVSGAKIGSKGR-PLPGAGRVELAAYDPEHDLI----- 793 (994)
T ss_pred ceEEEecCCCCHHHHHHHHHHhCchhee-eeeecccccccccccCCCCCcccCC-ccCCCCceeEEEecCcCCce-----
Confidence 4566666666 44567777778778888 8999999854221001111112232 23332112222211100000
Q ss_pred cCCCCCCCCCCCCcceeeccccCCCceeEEEEccc----------ccee-----ccccCCEEEEecccCCCCeEEEEeec
Q 007149 385 CNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF----------TGLY-----RYRVGDILMVTGFHNNAPQFWFVHRK 449 (616)
Q Consensus 385 ~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~----------~Gly-----RYr~GDvv~v~gf~~~~P~i~f~gR~ 449 (616)
+ .| +++. +.+++.|+.+||.+... .|.+ -|+|||+.+++ ....+.|+||.
T Consensus 794 i-----~d---~~G~---~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~d----~dG~l~~~GR~ 858 (994)
T PRK07868 794 L-----ED---DRGF---VRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRRD----DDGDYWLVDRR 858 (994)
T ss_pred e-----ec---CCce---EEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEEc----CCCCEEEeccC
Confidence 0 00 0010 12467899999998642 2223 28899999987 35689999999
Q ss_pred CceeeccceecCHHHHHHHHHH
Q 007149 450 NVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 450 ~~~l~~~gek~~e~~v~~av~~ 471 (616)
++++++.|++|.+.+||.+|.+
T Consensus 859 dd~Ik~~G~~I~p~EIE~~L~~ 880 (994)
T PRK07868 859 GSVIRTARGPVYTEPVTDALGR 880 (994)
T ss_pred CCEEEeCCceEcHHHHHHHHhc
Confidence 9999999999999999999976
No 116
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=98.43 E-value=7.4e-06 Score=90.01 Aligned_cols=43 Identities=7% Similarity=0.098 Sum_probs=39.2
Q ss_pred ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 424 RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 424 RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|+|||++++. ...+.|+||.++++++.|+++++.+|+.+|.+
T Consensus 333 ~~~TGD~~~~~-----~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~ 375 (458)
T PRK09029 333 WFATRDRGEWQ-----NGELTILGRLDNLFFSGGEGIQPEEIERVINQ 375 (458)
T ss_pred ccCCCCcEEEe-----CCEEEEecccccceeeCCEEeCHHHHHHHHhc
Confidence 48999999987 24799999999999999999999999999976
No 117
>PRK13390 acyl-CoA synthetase; Provisional
Probab=98.39 E-value=1.1e-05 Score=89.54 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=52.0
Q ss_pred cCCCceeEEEEccc---ccee----------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGLY----------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLL 466 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gly----------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~ 466 (616)
++.|+.+||+|.+. .|+| -|+|||++++.. ...+.|+||.++++++.|+++++.+|+
T Consensus 343 ~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~----dg~l~~~gR~~~~i~~~G~~v~p~eIE 418 (501)
T PRK13390 343 LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE----DGYLYLADRKSFMIISGGVNIYPQETE 418 (501)
T ss_pred CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC----CCeEEEeeccccceeECCeeeCHHHHH
Confidence 46899999999753 3332 259999999974 468999999999999999999999999
Q ss_pred HHHHH
Q 007149 467 KAVTE 471 (616)
Q Consensus 467 ~av~~ 471 (616)
.+|..
T Consensus 419 ~~l~~ 423 (501)
T PRK13390 419 NALTM 423 (501)
T ss_pred HHHHh
Confidence 99964
No 118
>PRK13391 acyl-CoA synthetase; Provisional
Probab=98.37 E-value=1.1e-05 Score=89.91 Aligned_cols=128 Identities=13% Similarity=0.067 Sum_probs=82.5
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC-CC--CCCCceeecCCceEEEEEeCCCCCCcc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL-CK--PSDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~-~~--~~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
.+..+++|+. ....+.+++.+ |.+++ ..||+||+......... +. +...+. ..+ +..+.++.+
T Consensus 276 ~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~-~~~--g~~~i~d~~------ 344 (511)
T PRK13391 276 SLEVAIHAAAPCPPQVKEQMIDWW-GPIIH-EYYAATEGLGFTACDSEEWLAHPGTVGR-AMF--GDLHILDDD------ 344 (511)
T ss_pred ceeEEEEccCCCCHHHHHHHHHHc-CCcee-eeeccccccceEEecCccccccCCCcCC-ccc--ceEEEECCC------
Confidence 3666666664 44556677777 56776 99999998432111111 00 111121 111 223333311
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc--ccee---------------ccccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF--TGLY---------------RYRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~--~Gly---------------RYr~GDvv~v~gf~~~~P~ 442 (616)
.+ .++.|+.+||++... -|+| -|+|||+.++.. ...
T Consensus 345 ------------------~~-----~~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~----~g~ 397 (511)
T PRK13391 345 ------------------GA-----ELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE----DGY 397 (511)
T ss_pred ------------------CC-----CCCCCCceEEEEecCcceEEcCChhHhHHhhccCCCEEecCCEEEECC----Ccc
Confidence 11 236788999999762 3333 278999998873 568
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.|+||.++++++.|+++++.+|+.+|.+
T Consensus 398 l~~~gR~~~~i~~~G~~v~~~eie~~l~~ 426 (511)
T PRK13391 398 LYLTDRAAFMIISGGVNIYPQEAENLLIT 426 (511)
T ss_pred EEEeccCCCEEEeCCEEECHHHHHHHHHh
Confidence 99999999999999999999999999975
No 119
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=98.36 E-value=5.6e-06 Score=91.68 Aligned_cols=60 Identities=8% Similarity=0.178 Sum_probs=50.9
Q ss_pred CCceeEEEEcc---ccceec--------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 408 LGHCYELVVTT---FTGLYR--------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 408 ~G~~yelVvTt---~~GlyR--------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|+.+||+|.. +.|+|. |+|||++++. ....+.|+||.+++++++|+|+++.+||.++.+
T Consensus 298 ~g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d----~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~ 368 (452)
T PRK07445 298 ANQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLD----AQGYLHILGRNSQKIITGGENVYPAEVEAAILA 368 (452)
T ss_pred CCCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEc----CCCCEEEEeecCCEEEECCEEECHHHHHHHHHh
Confidence 48899999953 355542 8999999986 355899999999999999999999999999976
No 120
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=98.29 E-value=1.8e-05 Score=86.39 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=39.5
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+|||+.++.. ...+.|+||.++++++.|+|+++.+|+.++.+
T Consensus 277 ~~tgD~g~~d~----~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~ 319 (386)
T TIGR02372 277 LDLQDRLAWDK----DGGFTILGRKDEILQVGGVNVSPGHVRDILER 319 (386)
T ss_pred eecCceEEEcC----CCcEEEecccCCEEEECCEEEcHHHHHHHHHc
Confidence 78999998873 57899999999999999999999999999976
No 121
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=98.28 E-value=1.6e-05 Score=91.25 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=53.5
Q ss_pred cccCCCceeEEEEcc---cccee--------------------------------ccccCCEEEEecccCCCCeEEEEee
Q 007149 404 TNVKLGHCYELVVTT---FTGLY--------------------------------RYRVGDILMVTGFHNNAPQFWFVHR 448 (616)
Q Consensus 404 ~ev~~G~~yelVvTt---~~Gly--------------------------------RYr~GDvv~v~gf~~~~P~i~f~gR 448 (616)
.++++|+.+||.|.. +.|+| -|+|||+.++. ...+.|+||
T Consensus 422 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-----dG~l~i~GR 496 (612)
T PRK12476 422 AELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-----DGELYITGR 496 (612)
T ss_pred cCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-----CCEEEEEec
Confidence 346789999999964 34554 48999999764 347999999
Q ss_pred cCceeeccceecCHHHHHHHHHHH
Q 007149 449 KNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 449 ~~~~l~~~gek~~e~~v~~av~~a 472 (616)
.+++|+++|+++++.+||.+|.+.
T Consensus 497 ~~d~I~~~G~~I~p~eIE~~l~~~ 520 (612)
T PRK12476 497 IADLIVIDGRNHYPQDIEATVAEA 520 (612)
T ss_pred cCcEEEECCcccCHHHHHHHHHHh
Confidence 999999999999999999999764
No 122
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=98.27 E-value=4.5e-05 Score=84.78 Aligned_cols=219 Identities=17% Similarity=0.244 Sum_probs=131.1
Q ss_pred HHHHhhcCCCCeeecccccccccee-ecCCCCCCCCCCce-e-ecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCC
Q 007149 320 PILEFYSGGLPLVSTMYASSECYFG-INFKPLCKPSDVSY-T-LLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHD 396 (616)
Q Consensus 320 ~~l~~~~~~~~~~~~~y~asE~~~~-i~~~~~~~~~~~~~-~-l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (616)
+++.+.| |.+-+.+.||||||.++ +|++... ..-++ . +.....=|+.|-.+....+. -. .+
T Consensus 373 ~~Fv~RF-g~~~IgE~YgaTEgn~~~~N~d~~v--GA~G~~~~~~~~l~p~~LIk~D~~t~E~----------iR---d~ 436 (649)
T KOG1179|consen 373 QQFVKRF-GIIKIGEFYGATEGNSNLVNYDGRV--GACGFMSRLLKLLYPFRLIKVDPETGEP----------IR---DS 436 (649)
T ss_pred HHHHHHc-CCCeEEEEeccccCcceeeeecCcc--ccccchhhhhhhccceEEEEecCCCCce----------ee---cC
Confidence 6677888 66655699999999775 4655432 11111 1 11111236777666433211 01 12
Q ss_pred CcceeeccccCCCceeEEEEc--------cccc-----------eec---------cccCCEEEEecccCCCCeEEEEee
Q 007149 397 ETEIVDLTNVKLGHCYELVVT--------TFTG-----------LYR---------YRVGDILMVTGFHNNAPQFWFVHR 448 (616)
Q Consensus 397 ~~~~v~l~ev~~G~~yelVvT--------t~~G-----------lyR---------Yr~GDvv~v~gf~~~~P~i~f~gR 448 (616)
++-.+. +++||.+.||=. .+.| ++| |++||++.++- -..+.|..|
T Consensus 437 ~G~Ci~---~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~----~GylYF~DR 509 (649)
T KOG1179|consen 437 QGLCIP---CPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADE----LGYLYFKDR 509 (649)
T ss_pred CceEEE---CCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEec----CCcEEEecc
Confidence 233332 488999977643 2334 233 99999999983 668999999
Q ss_pred cCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEe-ecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHH
Q 007149 449 KNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAY-ADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSR 527 (616)
Q Consensus 449 ~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~-~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ 527 (616)
++|-.--.||+++-.||++.+..... ++ .+.-|-+. +..++..|-=.|. ++ +..+-+++++-+.
T Consensus 510 tGDTFRWKGENVsTtEVe~~l~~~~~-~~----dv~VYGV~VP~~EGRaGMAaI~--~~--------p~~~~d~~~l~~~ 574 (649)
T KOG1179|consen 510 TGDTFRWKGENVSTTEVEDVLSALDF-LQ----DVNVYGVTVPGYEGRAGMAAIV--LD--------PTTEKDLEKLYQH 574 (649)
T ss_pred CCCceeecCCcccHHHHHHHHhhhcc-cc----ceeEEEEecCCccCccceEEEE--ec--------CcccchHHHHHHH
Confidence 99999999999999999988865321 11 22334332 2333333322222 11 1122356666667
Q ss_pred HHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHHHHHhcCCCCCCccCCccc
Q 007149 528 VEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMDFSVSQGSSVNQYKTPRCI 582 (616)
Q Consensus 528 ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~~~~~~G~~~~Q~K~Pr~~ 582 (616)
+.+.| +.|+.=|. . +| .=.+=.-|||+..+..+++.|-..++++-|--.
T Consensus 575 l~~~L-P~YA~P~F-l-Rl---~~~i~~TgTFKl~K~~L~~egf~p~~~~dply~ 623 (649)
T KOG1179|consen 575 LRENL-PSYARPRF-L-RL---QDEIEKTGTFKLQKTELQKEGFNPAIISDPLYY 623 (649)
T ss_pred HHhhC-ccccchHH-H-HH---HhhhhcccchhhHHHHHHHccCCccccCCceEE
Confidence 77766 67776652 2 33 122336799997766677789888888888753
No 123
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=98.19 E-value=2.4e-05 Score=89.49 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=91.3
Q ss_pred ccCCCCceEEEEEccchhchHHHHH--hhcCCCCeeeccccccccceeecCC-CCC-CCCCCceeecCCceEEEEEeCCC
Q 007149 299 KIWPRTKYIEVIVTGSMAQYIPILE--FYSGGLPLVSTMYASSECYFGINFK-PLC-KPSDVSYTLLPNMAYFEFLPVEK 374 (616)
Q Consensus 299 ~lWP~l~~i~~~~~G~~~~y~~~l~--~~~~~~~~~~~~y~asE~~~~i~~~-~~~-~~~~~~~~l~~~~~~~EFip~~~ 374 (616)
.||+| +..+++|++..-.+-++ ...-|++++ ++||-||+.-|.... +.+ .....|- .+|. +-.=++++++
T Consensus 416 ~LGg~---vr~~~sGaAPls~ev~~F~r~~~g~~v~-eGYGlTEts~g~~~~~~~d~~lgsvG~-p~p~-~~vKL~dvpe 489 (691)
T KOG1256|consen 416 SLGGN---VRLIISGAAPLSPEVLTFFRAALGCRVL-EGYGLTETSAGTTLTLPGDNVLGSVGP-PVPG-NEVKLVDVPE 489 (691)
T ss_pred HhcCc---eeEEEecCCCCCHHHHHHHHHhcCceee-ecccccccCCceEeccCCCCCCCCcCC-cccC-ceEEEechHH
Confidence 46678 88899998754444443 223379999 999999997443221 111 0111222 1221 1223333333
Q ss_pred CCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEc---cccceec--------------cccCCEEEEeccc
Q 007149 375 SNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVT---TFTGLYR--------------YRVGDILMVTGFH 437 (616)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvT---t~~GlyR--------------Yr~GDvv~v~gf~ 437 (616)
.+ --..|..+||-|- -+.|+|. .+|||+-+++.
T Consensus 490 ~n----------------------------y~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p-- 539 (691)
T KOG1256|consen 490 MN----------------------------YDADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDP-- 539 (691)
T ss_pred hC----------------------------cCcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECC--
Confidence 32 1135668999994 4789887 89999999995
Q ss_pred CCCCeEEEEeecCceeecc-ceecCHHHHHHHHHH
Q 007149 438 NNAPQFWFVHRKNVILSID-TDKTNEEDLLKAVTE 471 (616)
Q Consensus 438 ~~~P~i~f~gR~~~~l~~~-gek~~e~~v~~av~~ 471 (616)
...+.+++|+++++++. ||.|.++.||.+..+
T Consensus 540 --~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~ 572 (691)
T KOG1256|consen 540 --NGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKR 572 (691)
T ss_pred --CccEEEEecccceEEcCCCCccChHHHHHHHhc
Confidence 67999999999999988 899999999999976
No 124
>PRK07798 acyl-CoA synthetase; Validated
Probab=98.12 E-value=2.6e-05 Score=86.63 Aligned_cols=131 Identities=16% Similarity=0.046 Sum_probs=80.3
Q ss_pred eEEEEEccch---hchHHHHHhhcCCCCeeeccccccccce-eecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 306 YIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYF-GINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 306 ~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~-~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
.+..+.+|+. ....+.+++.+++++++ ..||+||+.. +......++....+-...+.. -.+.+..+
T Consensus 297 ~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~-------- 366 (533)
T PRK07798 297 SLFAIASGGALFSPSVKEALLELLPNVVLT-DSIGSSETGFGGSGTVAKGAVHTGGPRFTIGP-RTVVLDED-------- 366 (533)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccccccCCCCCCccCCCCccCCCc-eEEEECCC--------
Confidence 3667777764 44455666677788888 9999999732 221111111111110111221 22333211
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCce--eEEEEccc--c-----------------ceeccccCCEEEEecccCCC
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHC--YELVVTTF--T-----------------GLYRYRVGDILMVTGFHNNA 440 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~--yelVvTt~--~-----------------GlyRYr~GDvv~v~gf~~~~ 440 (616)
.++ +..|+. ++++.+.. . |-.-|+|||++++.. .
T Consensus 367 ----------------~~~-----~~~g~~~~g~l~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~----~ 421 (533)
T PRK07798 367 ----------------GNP-----VEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA----D 421 (533)
T ss_pred ----------------CCC-----CCCCCCCeeEEEeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC----C
Confidence 122 345555 67776531 1 212478999999873 4
Q ss_pred CeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 441 PQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 441 P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
..+.|+||.+++++++|+++++.+|+.++.+
T Consensus 422 g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 452 (533)
T PRK07798 422 GTITLLGRGSVCINTGGEKVFPEEVEEALKA 452 (533)
T ss_pred CcEEEEccccceEecCCEEeCHHHHHHHHHh
Confidence 5899999999999999999999999999865
No 125
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=98.01 E-value=2.2e-05 Score=91.82 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=51.1
Q ss_pred CCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEEEeecCceee-ccceecCHHHHHHH
Q 007149 407 KLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILS-IDTDKTNEEDLLKA 468 (616)
Q Consensus 407 ~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~-~~gek~~e~~v~~a 468 (616)
.+|..+||.|.. +.|+|+ |+|||+++++. ...+.|+||.+++++ ..|+++.+++||.+
T Consensus 503 ~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~----dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~ 578 (700)
T PTZ00216 503 TPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAA----NGTLRIIGRVKALAKNCLGEYIALEALEAL 578 (700)
T ss_pred CCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcC----CCcEEEEEehHhheecCCCceeccHHHHHH
Confidence 456678999963 466653 99999999973 568999999999997 89999999999999
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+.+
T Consensus 579 l~~ 581 (700)
T PTZ00216 579 YGQ 581 (700)
T ss_pred Hhc
Confidence 966
No 126
>PRK08162 acyl-CoA synthetase; Validated
Probab=97.87 E-value=0.00047 Score=77.48 Aligned_cols=57 Identities=11% Similarity=0.208 Sum_probs=49.2
Q ss_pred eeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 411 CYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 411 ~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.+||+|+. ..|+|. |+|||+++++. ...+.|+||.++++++.|+++++.+|+.+|.+
T Consensus 388 ~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~----dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~ 460 (545)
T PRK08162 388 IGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHP----DGYIKIKDRSKDIIISGGENISSIEVEDVLYR 460 (545)
T ss_pred eeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcC----CccEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 59999985 345543 99999999874 46899999999999999999999999999975
No 127
>PLN02479 acetate-CoA ligase
Probab=97.70 E-value=0.00019 Score=81.40 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=49.3
Q ss_pred ceeEEEEcc---cccee-------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 410 HCYELVVTT---FTGLY-------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 410 ~~yelVvTt---~~Gly-------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.+||+|+. ..|+| .|+|||++++.. ...+.|+||.++++++.|+++++.+|+.++.+
T Consensus 401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 401 TMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHP----DGYIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred CceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcC----CccEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 569999974 34554 399999999873 46899999999999999999999999999965
No 128
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=97.55 E-value=0.0077 Score=67.39 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=88.6
Q ss_pred EEEEEccchhc--hHHHHHhhcCCCCeeeccccccccceeec-CCCCCCC-CCCceeecCCceEEEEEeCCCCCCcccch
Q 007149 307 IEVIVTGSMAQ--YIPILEFYSGGLPLVSTMYASSECYFGIN-FKPLCKP-SDVSYTLLPNMAYFEFLPVEKSNGELTQE 382 (616)
Q Consensus 307 i~~~~~G~~~~--y~~~l~~~~~~~~~~~~~y~asE~~~~i~-~~~~~~~-~~~~~~l~~~~~~~EFip~~~~~~~~~~~ 382 (616)
|+-+++||++. -.+++-..+=.+|+. .+||-||..-|-. .++.+.. ..+|- ++ ..+++-.++.++..=
T Consensus 404 lR~~LsGGapLS~dtQrF~nic~C~Pv~-qGYGLTEtca~~tv~e~~d~~~g~vG~-pl-~c~eiKLvdw~EgGY----- 475 (678)
T KOG1180|consen 404 LRYILSGGAPLSPDTQRFMNICFCCPVL-QGYGLTETCAAATVLEPEDFSTGRVGA-PL-PCCEIKLVDWEEGGY----- 475 (678)
T ss_pred eEEEEeCCCCCCHHHHHHHHHhcccccc-ccccccchhcccEecChhhcccccccC-Cc-cceEEEEEEhhhcCc-----
Confidence 66778888744 334444333257998 9999999865432 2332210 01111 11 234555565554320
Q ss_pred hhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-----------------cccCCEEEEecccCCCCe
Q 007149 383 FQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-----------------YRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-----------------Yr~GDvv~v~gf~~~~P~ 442 (616)
...| .+ -++||+|+- ..|+|. |+||||.+++ ....
T Consensus 476 ------~~~~--------------~P-PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~----pdG~ 530 (678)
T KOG1180|consen 476 ------FAKN--------------KP-PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFH----PDGC 530 (678)
T ss_pred ------cCCC--------------CC-CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceec----CCCc
Confidence 0000 01 156888752 244433 9999999998 4669
Q ss_pred EEEEeecCceeec-cceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCC
Q 007149 443 FWFVHRKNVILSI-DTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTC 493 (616)
Q Consensus 443 i~f~gR~~~~l~~-~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~ 493 (616)
++++.|++|++++ +||=++-+-||.++... =-|.+-++++|..
T Consensus 531 LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~--------p~V~NICvyAd~~ 574 (678)
T KOG1180|consen 531 LKIIDRKKDLVKLQNGEYISLGKVEAALRSS--------PYVDNICVYADSN 574 (678)
T ss_pred EEEeechhhhhhhcccceeehHHHHHHHhcC--------cchhheEEecccc
Confidence 9999999999986 59999999999888542 1234567777753
No 129
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=97.41 E-value=0.0094 Score=64.83 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHH-hccCChhhhhhc---CCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCcccc--Ccccce
Q 007149 29 QIQLQVLKEILT-RNAKTEYLKGYF---NLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIIS--AQPITE 102 (616)
Q Consensus 29 ~~Q~~~L~~iL~-~~~~T~ygr~~~---gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL~--~~pi~~ 102 (616)
+...+.++++.+ +.++++.||++. |++..+.+++ .+|.+--.-++. ..|.+ .+.+..
T Consensus 31 ~l~~~~~~~~~~~q~~~~~~Yr~~~~~~~~~~~v~~~~-------dIP~lPi~~FK~----------~~L~S~~~e~~~~ 93 (365)
T PF04443_consen 31 ELFLALALELFRYQYEHNPPYRKYCDALGFDEDVKDLE-------DIPFLPIRFFKE----------HELLSVPEEEVEK 93 (365)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccHH-------HCCcchHHHHhh----------ceeeecChhhhee
Confidence 344455666666 488899999832 3331344443 367766665553 13332 234667
Q ss_pred eecccccCCCCCccccCChHHHH
Q 007149 103 FLTSSGTSGGQPKMMPSTDEDLE 125 (616)
Q Consensus 103 f~~TSGTT~G~~K~IP~T~~~l~ 125 (616)
...||||| |.+-.|......+.
T Consensus 94 ~~tSSGTt-G~~S~i~~D~~t~~ 115 (365)
T PF04443_consen 94 VFTSSGTT-GQPSRIFRDRETAE 115 (365)
T ss_pred EEECCCCC-CCCcEEEECHHHHH
Confidence 78999999 66666777666544
No 130
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=95.33 E-value=0.032 Score=48.87 Aligned_cols=84 Identities=19% Similarity=0.210 Sum_probs=52.8
Q ss_pred ceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHH
Q 007149 457 TDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVY 536 (616)
Q Consensus 457 gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y 536 (616)
|.+++|.+|+++|.+.. ++ -.+|.+..+..+.-....|.+|+.. +. ..+.+.++.+++.|.++|
T Consensus 1 GvnvfP~~Ie~vl~~~~------~~-~~~y~i~v~~~~~~D~l~v~vE~~~-~~----~~~~~~~~~l~~~i~~~l---- 64 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFP------EV-SPEYQIVVTREGGLDELTVRVELRP-GF----SDDAEDLEALAERIAERL---- 64 (96)
T ss_dssp TEEE-HHHHHHHHCTST------TE-EEEEEEEEEEETTEEEEEEEEEEST-TC----CTTHHHHHHHHHHHHHHH----
T ss_pred CcEECHHHHHHHHHhCc------CC-CCcEEEEEEcCCCCcEEEEEEEECC-cc----CcchHHHHHHHHHHHHHH----
Confidence 78999999999997642 21 1278877654434445556666642 11 223456778888888888
Q ss_pred HHhhccCCccCCeEEEEcCCCcHHH
Q 007149 537 RRCRKKDNSIGPLEIRVVKDGTFDA 561 (616)
Q Consensus 537 ~~~R~~~g~l~p~~v~~v~~GtF~~ 561 (616)
|+.. .+ .++|++|++|++++
T Consensus 65 ---k~~l-gv-~~~V~lv~~gtLpr 84 (96)
T PF14535_consen 65 ---KERL-GV-RPEVELVPPGTLPR 84 (96)
T ss_dssp ---HHHH-SS--EEEEEE-TT-S--
T ss_pred ---Hhhc-Cc-eEEEEEECCCCccC
Confidence 6666 57 45999999999996
No 131
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.44 E-value=0.33 Score=55.95 Aligned_cols=62 Identities=23% Similarity=0.289 Sum_probs=49.0
Q ss_pred cCCCceeEEEEccc---cce------------e--ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 406 VKLGHCYELVVTTF---TGL------------Y--RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 406 v~~G~~yelVvTt~---~Gl------------y--RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
+..|..+|+.|+-. .|+ . -|+|||+++.. ....++|+||.+..+++.|..+-..+|+.+
T Consensus 562 ~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~~----~dg~~e~lgr~D~qvki~g~Riel~eie~~ 637 (642)
T COG1020 562 LPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPL----ADGALEYLGRKDSQVKIRGFRIELGEIEAA 637 (642)
T ss_pred CCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeEC----CCCeEEEeccccceeEeceEecCcHHHHHH
Confidence 46777889988742 332 1 39999999943 466999999999999999999988899887
Q ss_pred HHH
Q 007149 469 VTE 471 (616)
Q Consensus 469 v~~ 471 (616)
+..
T Consensus 638 l~~ 640 (642)
T COG1020 638 LAE 640 (642)
T ss_pred Hhc
Confidence 743
No 132
>PRK09188 serine/threonine protein kinase; Provisional
Probab=85.72 E-value=1.1 Score=48.99 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=32.1
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccc---eecCHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDT---DKTNEEDLLKAVTE 471 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~g---ek~~e~~v~~av~~ 471 (616)
|+|||++++. .....+.|+||.+ +| |++++. ||.++.+
T Consensus 211 ~~TGDlg~~~---d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~ 251 (365)
T PRK09188 211 LATGKKVYNF---ITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKS 251 (365)
T ss_pred EeCCCEEEEE---cCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHh
Confidence 8999999973 1356899999997 78 899999 9988876
No 133
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=61.42 E-value=7.5 Score=43.10 Aligned_cols=25 Identities=28% Similarity=0.249 Sum_probs=20.2
Q ss_pred ccceeecccccCCCCCccccCChHHH
Q 007149 99 PITEFLTSSGTSGGQPKMMPSTDEDL 124 (616)
Q Consensus 99 pi~~f~~TSGTT~G~~K~IP~T~~~l 124 (616)
.......||||| |.||-+..|...+
T Consensus 121 ~~~~i~~TSGTT-G~PKgV~~t~~~l 145 (452)
T PRK07445 121 TGWIMIPTGGSS-GQIRFAIHTWETL 145 (452)
T ss_pred CcEEEEeCCCCC-CCCcEEEechHHH
Confidence 343556799999 8999999998765
No 134
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=55.72 E-value=8.9 Score=47.16 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=40.1
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
||+||.+|.. ....++|.||.++.++++|-++.=.++..+|..-
T Consensus 456 y~tgD~gr~l----~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~ 499 (1032)
T KOG1178|consen 456 YRTGDNGRSL----KNGGLEISGRADRQIKDRGVRIELGELNTVVEVH 499 (1032)
T ss_pred ccccccceee----cCCCEEEEEeccceEEEccEEEehhhhchhhccC
Confidence 9999999988 2668999999999999999999999999988764
No 135
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=44.50 E-value=14 Score=42.58 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.6
Q ss_pred ccceeecccccCCCCCccccCChHHHH
Q 007149 99 PITEFLTSSGTSGGQPKMMPSTDEDLE 125 (616)
Q Consensus 99 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 125 (616)
.+.+...||||| |+||-+..|...+.
T Consensus 194 d~a~i~yTSGTT-G~PKgV~~sh~~l~ 219 (612)
T PRK12476 194 DVSHLQYTSGST-RPPVGVEITHRAVG 219 (612)
T ss_pred ceEEEEeCCCCC-CCCceEEeeHHHHH
Confidence 344778899999 89999999998753
No 136
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=43.88 E-value=18 Score=42.66 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=22.6
Q ss_pred cccceeecccccCCCCCccccCChHHHHH
Q 007149 98 QPITEFLTSSGTSGGQPKMMPSTDEDLER 126 (616)
Q Consensus 98 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~ 126 (616)
+.+.++..||||| |+||-+..|...+..
T Consensus 264 ~d~a~iiyTSGTT-G~PKGV~lth~nl~~ 291 (700)
T PTZ00216 264 DDLALIMYTSGTT-GDPKGVMHTHGSLTA 291 (700)
T ss_pred ccEEEEEEeCCCC-CcCcEEEEEhHHHHH
Confidence 3455778899999 899999999987643
No 137
>PRK07798 acyl-CoA synthetase; Validated
Probab=37.90 E-value=17 Score=40.36 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=19.8
Q ss_pred eeecccccCCCCCccccCChHHHH
Q 007149 102 EFLTSSGTSGGQPKMMPSTDEDLE 125 (616)
Q Consensus 102 ~f~~TSGTT~G~~K~IP~T~~~l~ 125 (616)
+...||||| |.||-+.+|...+.
T Consensus 167 ~i~~TSGTT-G~PK~v~~s~~~~~ 189 (533)
T PRK07798 167 YLLYTGGTT-GMPKGVMWRQEDIF 189 (533)
T ss_pred EEEECCCCC-CCCcEEEEecHHHH
Confidence 567799999 89999999998653
No 138
>PLN02479 acetate-CoA ligase
Probab=36.48 E-value=20 Score=40.67 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.3
Q ss_pred eeecccccCCCCCccccCChHHH
Q 007149 102 EFLTSSGTSGGQPKMMPSTDEDL 124 (616)
Q Consensus 102 ~f~~TSGTT~G~~K~IP~T~~~l 124 (616)
.+..||||| |+||-+.+|...+
T Consensus 199 ~i~yTSGTT-G~PKgV~~sh~~~ 220 (567)
T PLN02479 199 ALGYTSGTT-ASPKGVVLHHRGA 220 (567)
T ss_pred EEEECCCCC-CCCcEEEeccHHH
Confidence 578899999 8999999997754
No 139
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.11 E-value=1.9e+02 Score=25.15 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEe
Q 007149 462 EEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELK 506 (616)
Q Consensus 462 e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele 506 (616)
+..+..++..+.. .|+.+.....++. ...++.|.+|++++
T Consensus 25 pGsL~~vL~~Fa~----~~INLt~IeSRP~-~~~~~~Y~FfVDie 64 (90)
T cd04931 25 VGALAKVLRLFEE----KDINLTHIESRPS-RLNKDEYEFFINLD 64 (90)
T ss_pred CcHHHHHHHHHHH----CCCCEEEEEeccC-CCCCceEEEEEEEE
Confidence 4457777766653 6777777666553 33567899999997
No 140
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=32.59 E-value=1.4e+02 Score=24.67 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=36.2
Q ss_pred eecCHHHHHHHHHHHHhhcccc-CCEEEeEEEeecCCCCCceEEEEEEEee
Q 007149 458 DKTNEEDLLKAVTEAKLLIEPL-GFLLTEYTAYADTCSIPGHYVVFWELKS 507 (616)
Q Consensus 458 ek~~e~~v~~av~~a~~~~~~~-g~~l~~f~~~~~~~~~~~~Y~l~~ele~ 507 (616)
++-.|+.++.||.+|.+.++.. ++++.+..+..+. +.-.+|.+-+++.|
T Consensus 13 ~~S~edAv~~Av~~A~kTl~ni~~~eV~e~~~~v~d-g~i~~y~v~lkv~F 62 (66)
T PF07311_consen 13 PKSWEDAVQNAVARASKTLRNIRWFEVKEQRGHVED-GKITEYQVNLKVSF 62 (66)
T ss_dssp SSHHHHHHHHHHHHHHHHSSSEEEEEEEEEEEEEET-TCEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhchhCcEEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 3455888999999998876432 5688888877665 45568998888766
No 141
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=31.57 E-value=33 Score=33.12 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=27.3
Q ss_pred eeccccCCEEEEec---ccCCCCeEEEEeecCceeeccc
Q 007149 422 LYRYRVGDILMVTG---FHNNAPQFWFVHRKNVILSIDT 457 (616)
Q Consensus 422 lyRYr~GDvv~v~g---f~~~~P~i~f~gR~~~~l~~~g 457 (616)
|--|+.||+|-+.+ .+.+.|-=.|-||++.+.|+.|
T Consensus 31 l~~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~ 69 (160)
T PTZ00189 31 LTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTP 69 (160)
T ss_pred HHHccCCCEEEEEecCCeecCCCcccccCCCeEEEeecC
Confidence 34488899988876 4455677788888888888776
No 142
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=31.25 E-value=1.1e+02 Score=29.14 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=36.7
Q ss_pred cCCCceeEEEEcc--ccceecc----ccCCEEEEecccCCCCeEEEEeec----CceeeccceecCHH
Q 007149 406 VKLGHCYELVVTT--FTGLYRY----RVGDILMVTGFHNNAPQFWFVHRK----NVILSIDTDKTNEE 463 (616)
Q Consensus 406 v~~G~~yelVvTt--~~GlyRY----r~GDvv~v~gf~~~~P~i~f~gR~----~~~l~~~gek~~e~ 463 (616)
|++|+.-+|.||. .+|-+++ ..+|+ ||+- .--.|+|.|.+.. +.++.-+-|||+.-
T Consensus 47 Lp~gq~L~v~VtDvDLAG~~~P~~~~~~~dv-Rvvk-di~pPRI~l~Y~L~d~~G~vi~~g~e~L~Dm 112 (141)
T PF11454_consen 47 LPPGQTLEVTVTDVDLAGDVEPFWGSGANDV-RVVK-DIYPPRIELSYTLTDADGKVIKQGEEKLKDM 112 (141)
T ss_pred CCCCCEEEEEEEecccCcccccCcCCCCCcE-EEEc-cCCCCcEEEEEEEECCCCcEEEecceEEecc
Confidence 7899999999997 5997766 44554 5552 1236899887764 34444444555443
No 143
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=30.65 E-value=43 Score=34.21 Aligned_cols=50 Identities=18% Similarity=0.415 Sum_probs=34.5
Q ss_pred cccCcccceeecccccCCCCCccccCC-hH-HHHHHHHHHHHHHHHHhhcCCC
Q 007149 94 IISAQPITEFLTSSGTSGGQPKMMPST-DE-DLERKTFFYNMLIPVMNKYVDD 144 (616)
Q Consensus 94 lL~~~pi~~f~~TSGTT~G~~K~IP~T-~~-~l~~~~~~~~~~~~~~~~~~p~ 144 (616)
+|..-.+..|.+|||.+ |=.-++|.. .. ..++.+.+...++..+.+..|.
T Consensus 121 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~~r~fa~~iA~~l~~~~P~ 172 (223)
T cd04866 121 ILDALGLTSFVKTSGNK-GLQVYIPLPDNKFTYDETRLFTEFIAEYLCQQFPE 172 (223)
T ss_pred HHHHcCCccceEccCCC-eEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHCch
Confidence 45555678899999999 899999999 43 2233344444555566667775
No 144
>PRK08162 acyl-CoA synthetase; Validated
Probab=30.59 E-value=26 Score=39.30 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=19.4
Q ss_pred ceeecccccCCCCCccccCChHHH
Q 007149 101 TEFLTSSGTSGGQPKMMPSTDEDL 124 (616)
Q Consensus 101 ~~f~~TSGTT~G~~K~IP~T~~~l 124 (616)
.....||||| |+||-|.+|...+
T Consensus 185 ~~i~~TSGTT-G~PKgv~~t~~~~ 207 (545)
T PRK08162 185 IALNYTSGTT-GNPKGVVYHHRGA 207 (545)
T ss_pred EEEEeCCCCC-CCCcEEEEecHHH
Confidence 3678899999 8999999998753
No 145
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=28.77 E-value=41 Score=34.81 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=35.8
Q ss_pred cccCcccceeecccccCCCCCccccCChHHH-HHHHHHHHHHHHHHhhcCCC
Q 007149 94 IISAQPITEFLTSSGTSGGQPKMMPSTDEDL-ERKTFFYNMLIPVMNKYVDD 144 (616)
Q Consensus 94 lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l-~~~~~~~~~~~~~~~~~~p~ 144 (616)
+|..-.+..|.+|||.+ |=.-++|+....- +..+.+...++..+.+.+|.
T Consensus 142 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~Pd 192 (245)
T TIGR02778 142 LLDELGLESFVKTSGGK-GLHVYVPLRPTLSWDEVKDFAKALAQALAQQMPD 192 (245)
T ss_pred HHHHcCCccceEccCCC-eEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCch
Confidence 45555678899999999 8999999998542 33344444555666777885
No 146
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=26.56 E-value=90 Score=28.79 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=44.0
Q ss_pred CCCCCCCCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCC
Q 007149 4 PPPHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLN 55 (616)
Q Consensus 4 ~~~~~~~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~ 55 (616)
|+.+|....|....+.+.+..++.-..-++.|..+|.+-.-+-|.++ .|.+
T Consensus 70 ~~~~y~~~~~~~l~~~ii~~~~~Mt~~EQ~~L~~lL~REGI~G~L~R-LgI~ 120 (122)
T PF07037_consen 70 PPAEYAVTWDSPLERQIIDTLEEMTPAEQEQLTSLLLREGISGFLQR-LGIR 120 (122)
T ss_pred CccccCCCCcchHHHHHHHHHHHCCHHHHHHHHHHHHHhhHHHHHHH-cCCc
Confidence 67889888899999999999998888888889999998888889988 7654
No 147
>PLN00190 60S ribosomal protein L21; Provisional
Probab=26.56 E-value=46 Score=32.15 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=28.0
Q ss_pred eeccccCCEEEEec---ccCCCCeEEEEeecCceeeccc
Q 007149 422 LYRYRVGDILMVTG---FHNNAPQFWFVHRKNVILSIDT 457 (616)
Q Consensus 422 lyRYr~GDvv~v~g---f~~~~P~i~f~gR~~~~l~~~g 457 (616)
|.-|+.||+|-+.+ ++.+.|-=.|-||++.+.|+.|
T Consensus 31 l~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~ 69 (158)
T PLN00190 31 LRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTK 69 (158)
T ss_pred HHHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecC
Confidence 44489999998886 4455677788899998888877
No 148
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=25.80 E-value=49 Score=33.86 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=35.7
Q ss_pred cccCcccceeecccccCCCCCccccCChHHH-HHHHHHHHHHHHHHhhcCCC
Q 007149 94 IISAQPITEFLTSSGTSGGQPKMMPSTDEDL-ERKTFFYNMLIPVMNKYVDD 144 (616)
Q Consensus 94 lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l-~~~~~~~~~~~~~~~~~~p~ 144 (616)
+|..-.+..|.+|||.+ |=.-++|.....- +..+.+...++..+.+.+|.
T Consensus 127 ~L~~lgL~sf~KTSG~k-GlHv~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~ 177 (228)
T cd04865 127 VLDELGLRGYPKTSGAR-GLHIYVPIAPRYTFEEVRRFAELLAREVERRLPD 177 (228)
T ss_pred HHHHcCCccceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCch
Confidence 44555678899999999 8999999987542 33344444556667777886
No 149
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=25.27 E-value=52 Score=29.16 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=25.8
Q ss_pred eeccccCCEEEEe---cccCCCCeEEEEeecCceeeccce
Q 007149 422 LYRYRVGDILMVT---GFHNNAPQFWFVHRKNVILSIDTD 458 (616)
Q Consensus 422 lyRYr~GDvv~v~---gf~~~~P~i~f~gR~~~~l~~~ge 458 (616)
|.-|..||.|-++ .++...|-=+|.||++.++...|.
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ 69 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGR 69 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCC
Confidence 4558888887776 444556766788888877776663
No 150
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=24.98 E-value=4.5e+02 Score=27.85 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=42.7
Q ss_pred EecccCCCCeEEEEeec------C---ceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEE
Q 007149 433 VTGFHNNAPQFWFVHRK------N---VILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFW 503 (616)
Q Consensus 433 v~gf~~~~P~i~f~gR~------~---~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ 503 (616)
|....++.-||.+++|. + ....++...--+..+.++|..+. ..|+-++-.-.+ +....++.|.+|+
T Consensus 167 I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa----~~gINlTkIESR-P~k~~~~~Y~F~i 241 (279)
T COG0077 167 IEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFA----KRGINLTKIESR-PLKTGLGEYLFFI 241 (279)
T ss_pred ccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHH----HcCcceeeEeec-ccCCCCeeEEEEE
Confidence 44445667788888873 1 22223333344566777776664 367655544433 3445789999999
Q ss_pred EEee
Q 007149 504 ELKS 507 (616)
Q Consensus 504 ele~ 507 (616)
+++.
T Consensus 242 D~eg 245 (279)
T COG0077 242 DIEG 245 (279)
T ss_pred EEec
Confidence 9983
No 151
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=24.86 E-value=46 Score=34.06 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=35.4
Q ss_pred cccCcccceeecccccCCCCCccccCChHHH-HHHHHHHHHHHHHHhhcCCC
Q 007149 94 IISAQPITEFLTSSGTSGGQPKMMPSTDEDL-ERKTFFYNMLIPVMNKYVDD 144 (616)
Q Consensus 94 lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l-~~~~~~~~~~~~~~~~~~p~ 144 (616)
+|..-.+..|.+|||.+ |=.-++|.....- +..+.+...++..+.+.+|.
T Consensus 126 ~L~~lgL~~f~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~P~ 176 (227)
T cd04861 126 LLDELGLESFPKTSGGK-GLHVYVPLAPRYTWDEVRAFAKALARELARRLPD 176 (227)
T ss_pred HHHHcCCccceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCch
Confidence 44555678899999999 8999999987532 33344444556667777775
No 152
>PRK11899 prephenate dehydratase; Provisional
Probab=24.61 E-value=5.2e+02 Score=27.22 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEe
Q 007149 462 EEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELK 506 (616)
Q Consensus 462 e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele 506 (616)
+..+.++|..+.. .|+.+.-....+ ....++.|.+|+|++
T Consensus 205 pGaL~~vL~~Fa~----~gINLtkIeSRP-~~~~~~~Y~F~id~e 244 (279)
T PRK11899 205 PAALYKALGGFAT----NGVNMTKLESYM-VGGSFTATQFYADIE 244 (279)
T ss_pred CChHHHHHHHHHH----cCCCeeeEEeee-cCCCCceEEEEEEEE
Confidence 5567777777654 677776666555 344788999999998
No 153
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=24.58 E-value=71 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.643 Sum_probs=15.1
Q ss_pred cccCCEEEEecccCCCCeEEEE
Q 007149 425 YRVGDILMVTGFHNNAPQFWFV 446 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~ 446 (616)
|.+||+|+... ..|.+.+.
T Consensus 1 f~~GDvV~LKS---GGp~MTV~ 19 (53)
T PF09926_consen 1 FKIGDVVQLKS---GGPRMTVT 19 (53)
T ss_pred CCCCCEEEEcc---CCCCeEEE
Confidence 68999999994 67876655
No 154
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=23.35 E-value=62 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=25.8
Q ss_pred eeccccCCEEEEec---ccCCCCeEEEEeecCceeeccc
Q 007149 422 LYRYRVGDILMVTG---FHNNAPQFWFVHRKNVILSIDT 457 (616)
Q Consensus 422 lyRYr~GDvv~v~g---f~~~~P~i~f~gR~~~~l~~~g 457 (616)
|--|+.||+|-+.+ ++.+.|-=.|-||++.+.++.|
T Consensus 32 l~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~ 70 (98)
T PRK04306 32 LQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRG 70 (98)
T ss_pred HHhccCCCEEEEEecCceecCCccccccCCCEEEEeecC
Confidence 34488899888875 2234566678888888888776
No 155
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=22.84 E-value=5.2e+02 Score=22.61 Aligned_cols=103 Identities=13% Similarity=0.226 Sum_probs=56.6
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQ 523 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~ 523 (616)
.++-|.+.--.+..+. ..+.+.+.+...+. ..++.+..|.+.+| |+.+.+++. .. . .+.+
T Consensus 7 hiv~~~~~r~~~~~~~-~~~~l~~~l~~~~~---~~~~~i~~~~vm~n------HvHllv~~~--~~----~----~is~ 66 (121)
T PF01797_consen 7 HIVFRTKYRRPLFNDE-IREALLEILREICE---EYGIEIIAFVVMPN------HVHLLVSIP--PK----Q----SISK 66 (121)
T ss_dssp EEEEEBGGGTSSSSHH-HHHHHHHHHHHHHH---HTTEEEEEEEEETT------EEEEEEEE---TT----S-----HHH
T ss_pred EEEEeeeCCEeeeehh-eeeeeeeccccccc---cccceeeeecccCc------ccceeeeec--cc----c----cchh
Confidence 3445554444455555 66677777777664 47899999987644 999888874 21 1 2333
Q ss_pred HHHHHHH----hhChHHHHhhcc-C--Ccc--CCeEEEEcCCCcHHHHHHHH
Q 007149 524 CCSRVEE----SLDSVYRRCRKK-D--NSI--GPLEIRVVKDGTFDALMDFS 566 (616)
Q Consensus 524 ~~~~ld~----~Ln~~Y~~~R~~-~--g~l--~p~~v~~v~~GtF~~~~~~~ 566 (616)
+.+.+-. .+|..|.....+ . |.+ +.--...+.+..+....++.
T Consensus 67 ~~~~lK~~~s~~~~k~~~~~~~~~~~~~~~Wq~~y~~~~i~~~~~~~~~~YI 118 (121)
T PF01797_consen 67 FMQRLKGRSSRWINKEFPELKKRYFWRGHFWQRGYFDRSIRNESLDNVIRYI 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHSCCT-TSSBESEEEEEEEBSSBHHHHHHHH
T ss_pred eeecccccccccccccccceecccccccccccCCeEEEEECChhHHHHHHHH
Confidence 4444443 335444433211 1 111 13456666666777666553
No 156
>PRK11898 prephenate dehydratase; Provisional
Probab=22.56 E-value=5.4e+02 Score=27.05 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEe
Q 007149 462 EEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELK 506 (616)
Q Consensus 462 e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele 506 (616)
+..+.++|..+.. .|+.+..--.++ ....++.|.+|+|++
T Consensus 208 pGsL~~~L~~F~~----~~INLt~IeSRP-~~~~~~~y~F~vd~e 247 (283)
T PRK11898 208 PGALYKALSEFAW----RGINLTRIESRP-TKTGLGTYFFFIDVE 247 (283)
T ss_pred ccHHHHHHHHHHH----CCCCeeeEeccc-CCCCCccEEEEEEEE
Confidence 5567777777653 677777666554 334678999999998
No 157
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=22.46 E-value=46 Score=34.10 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=34.7
Q ss_pred cccCcccceeecccccCCCCCccccCChHHH-HHHHHHHHHHHHHHhhcCCC
Q 007149 94 IISAQPITEFLTSSGTSGGQPKMMPSTDEDL-ERKTFFYNMLIPVMNKYVDD 144 (616)
Q Consensus 94 lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l-~~~~~~~~~~~~~~~~~~p~ 144 (616)
+|..-.+..|.+|||++ |=.-++|.....- +..+.+...++..+.+..|.
T Consensus 126 ~L~~lgL~~~~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~lA~~l~~~~P~ 176 (227)
T cd04862 126 LLDELGLESFVKTSGGK-GLHVVVPLAPRAGWDEVKAFAKALAQHLARTNPD 176 (227)
T ss_pred HHHHcCCccceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCch
Confidence 44455577899999999 8999999987532 33344444555566677775
No 158
>PRK13390 acyl-CoA synthetase; Provisional
Probab=21.92 E-value=45 Score=36.95 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=22.8
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECY 342 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~ 342 (616)
+..+++|+. ....+.+++.+ +.+++ ..||+||+.
T Consensus 272 l~~v~~~g~~~~~~~~~~~~~~~-~~~~~-~~YG~tE~~ 308 (501)
T PRK13390 272 LRAVIHAAAPCPVDVKHAMIDWL-GPIVY-EYYSSTEAH 308 (501)
T ss_pred hheEEEcCCCCCHHHHHHHHHhc-CCcee-eeecccccC
Confidence 555666664 33445556666 57887 899999984
No 159
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=21.59 E-value=49 Score=33.97 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=35.1
Q ss_pred cccCcccceeecccccCCCCCccccCChHHH-HHHHHHHHHHHHHHhhcCCC
Q 007149 94 IISAQPITEFLTSSGTSGGQPKMMPSTDEDL-ERKTFFYNMLIPVMNKYVDD 144 (616)
Q Consensus 94 lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l-~~~~~~~~~~~~~~~~~~p~ 144 (616)
+|..-.+..|.+|||.+ |=.-+||.....- +..+.+...++..+.+.+|.
T Consensus 130 ~L~~lgL~s~~KTSG~k-GlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~P~ 180 (231)
T cd04863 130 RLAALGLASFPKTSGSK-GLHLYVPLDGPVSSDQTKEFAKALARELEREHPD 180 (231)
T ss_pred HHHHcCCccceECCCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHCch
Confidence 44455577899999999 8999999987543 33344444555566677775
No 160
>COG5475 Uncharacterized small protein [Function unknown]
Probab=21.26 E-value=1e+02 Score=24.65 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=19.9
Q ss_pred cccCCEEEEecccCCCCeEEEEeecCc
Q 007149 425 YRVGDILMVTGFHNNAPQFWFVHRKNV 451 (616)
Q Consensus 425 Yr~GDvv~v~gf~~~~P~i~f~gR~~~ 451 (616)
|.|||+|++. ...|++.+.+=.+|
T Consensus 5 FstgdvV~lK---sGGP~Mtvs~~ss~ 28 (60)
T COG5475 5 FSTGDVVTLK---SGGPRMTVSGYSSD 28 (60)
T ss_pred eecCcEEEee---cCCceEEEeccccC
Confidence 7899999999 47899988877653
No 161
>PTZ00297 pantothenate kinase; Provisional
Probab=20.69 E-value=78 Score=40.93 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=38.9
Q ss_pred eeEEEEccccceec--cccCCEEEEecccCCCCeEEEEeecCceeecc-ceecCHHHHHHHHHH
Q 007149 411 CYELVVTTFTGLYR--YRVGDILMVTGFHNNAPQFWFVHRKNVILSID-TDKTNEEDLLKAVTE 471 (616)
Q Consensus 411 ~yelVvTt~~GlyR--Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~-gek~~e~~v~~av~~ 471 (616)
.+||++. .++ =.|+++ +.|+. ....+.++||++++++.. ||.|.++.||.++..
T Consensus 825 ~GEIlvr----~~kdpe~T~e~--~~gW~-~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~ 881 (1452)
T PTZ00297 825 IGQLVLA----KKGEPRRTLPI--AAQWK-RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQ 881 (1452)
T ss_pred CCeEEEE----ECCChHHHHHh--hCcCc-cCCeEEEEeccccceECCCCcEEcHHHHHHHHhc
Confidence 4788883 111 225563 24553 356999999999998876 899999999999854
No 162
>PF13933 HRXXH: Putative peptidase family
Probab=20.08 E-value=2.5e+02 Score=29.09 Aligned_cols=69 Identities=19% Similarity=0.393 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCC
Q 007149 12 DNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEP 91 (616)
Q Consensus 12 ~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~ 91 (616)
||.-..+.+.....+..++=+.-=..||+--.+++|+|+|||-. .- + -|+ -+.+|+++|++
T Consensus 51 CN~T~r~qL~~al~ea~~lA~~AkdhlLr~G~~s~~f~kyFGn~------~~---~---~vi-------G~~d~iv~~dk 111 (245)
T PF13933_consen 51 CNATQRRQLNSALDEAVELAAHAKDHLLRWGNSSEFFRKYFGNG------ST---A---EVI-------GWYDRIVEGDK 111 (245)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHhcCCC------Cc---c---ccc-------hhhhhhccCCc
Confidence 45555666666666666665555566777777899999966533 11 1 122 46788889988
Q ss_pred Cccc--cCcc
Q 007149 92 SDII--SAQP 99 (616)
Q Consensus 92 ~~lL--~~~p 99 (616)
+++| |.+|
T Consensus 112 ~~~lfRCDDp 121 (245)
T PF13933_consen 112 SDVLFRCDDP 121 (245)
T ss_pred cCeEEeCCCC
Confidence 7776 5554
Done!