Query 007149
Match_columns 616
No_of_seqs 194 out of 887
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b2g_A GH3-1 auxin conjugating 100.0 2E-135 8E-140 1140.6 45.1 586 6-613 12-598 (609)
2 4eql_A 4-substituted benzoates 100.0 2E-133 5E-138 1124.4 43.1 563 10-601 11-580 (581)
3 4epl_A Jasmonic acid-amido syn 100.0 2E-132 8E-137 1112.3 49.6 565 7-604 10-581 (581)
4 3qov_A Phenylacetate-coenzyme 99.9 1.2E-20 4.2E-25 203.9 23.2 383 25-561 17-421 (436)
5 2y27_A Phenylacetate-coenzyme 99.8 3.4E-20 1.2E-24 200.5 20.6 384 25-560 21-422 (437)
6 2y4o_A Phenylacetate-coenzyme 99.8 1.1E-19 3.8E-24 196.8 24.3 386 25-560 23-426 (443)
7 3hgu_A EHPF; phenazine, antibi 99.5 1.2E-12 4.1E-17 138.2 20.3 87 30-126 22-118 (369)
8 3etc_A AMP-binding protein; ad 99.4 6.3E-12 2.2E-16 141.3 18.8 128 307-471 343-496 (580)
9 2d1s_A Luciferase, luciferin 4 99.4 2.5E-11 8.6E-16 135.2 21.7 130 307-471 311-462 (548)
10 4fuq_A Malonyl COA synthetase; 99.3 7.4E-11 2.5E-15 129.9 23.2 129 307-471 270-420 (503)
11 3e7w_A D-alanine--poly(phospho 99.3 1.1E-10 3.7E-15 128.6 24.0 133 299-471 257-419 (511)
12 3ni2_A 4-coumarate:COA ligase; 99.3 2.9E-11 1E-15 134.1 18.5 130 307-471 299-455 (536)
13 3fce_A D-alanine--poly(phospho 99.3 3.4E-11 1.2E-15 132.6 18.2 131 301-471 260-420 (512)
14 1t5h_X 4-chlorobenzoyl COA lig 99.3 9.9E-11 3.4E-15 128.7 21.0 129 307-471 274-423 (504)
15 2v7b_A Benzoate-coenzyme A lig 99.3 3.3E-10 1.1E-14 125.1 22.2 128 307-471 302-450 (529)
16 3nyq_A Malonyl-COA ligase; A/B 99.2 1.9E-10 6.3E-15 126.9 19.8 131 307-471 274-427 (505)
17 3l8c_A D-alanine--poly(phospho 99.2 2E-11 6.9E-16 134.5 11.1 129 307-471 266-424 (521)
18 3ite_A SIDN siderophore synthe 99.2 1.2E-10 4.1E-15 129.7 17.2 63 406-472 369-449 (562)
19 3ivr_A Putative long-chain-fat 99.2 3.9E-11 1.3E-15 132.0 13.1 130 307-472 274-422 (509)
20 1pg4_A Acetyl-COA synthetase; 99.2 3.3E-10 1.1E-14 129.0 21.1 161 406-596 456-646 (652)
21 3rix_A Luciferase, luciferin 4 99.2 1.3E-10 4.3E-15 129.4 17.0 132 307-472 309-461 (550)
22 3kxw_A Saframycin MX1 syntheta 99.2 1E-10 3.5E-15 130.6 16.1 64 404-472 392-480 (590)
23 1mdb_A 2,3-dihydroxybenzoate-A 99.2 1.9E-10 6.5E-15 127.7 17.7 128 307-471 300-451 (539)
24 3gqw_A Fatty acid AMP ligase; 99.2 5.8E-10 2E-14 123.8 21.1 63 405-472 405-483 (576)
25 3g7s_A Long-chain-fatty-acid-- 99.2 2E-10 7E-15 127.7 17.4 62 406-471 378-460 (549)
26 3r44_A Fatty acyl COA syntheta 99.2 2.5E-10 8.5E-15 126.1 16.5 60 407-471 359-434 (517)
27 3c5e_A Acyl-coenzyme A synthet 99.2 8.3E-10 2.8E-14 123.7 20.9 128 307-471 324-477 (570)
28 1ry2_A Acetyl-coenzyme A synth 99.1 8.9E-10 3.1E-14 125.8 19.4 231 304-593 383-659 (663)
29 1amu_A GRSA, gramicidin synthe 99.1 6.4E-10 2.2E-14 124.4 17.8 62 406-471 367-451 (563)
30 3rg2_A Enterobactin synthase c 99.1 1.4E-09 4.8E-14 122.8 20.0 129 307-471 304-455 (617)
31 4gr5_A Non-ribosomal peptide s 99.1 9.5E-11 3.2E-15 131.0 10.2 130 307-472 328-491 (570)
32 3ipl_A 2-succinylbenzoate--COA 99.1 7.2E-10 2.5E-14 121.5 16.8 60 408-471 345-419 (501)
33 3o83_A Peptide arylation enzym 99.1 8.2E-11 2.8E-15 130.8 9.2 130 307-472 309-461 (544)
34 3tsy_A Fusion protein 4-coumar 99.1 3.1E-10 1.1E-14 134.9 14.0 131 307-472 346-503 (979)
35 4dg8_A PA1221; ANL superfamily 99.0 2.7E-09 9.1E-14 121.1 14.5 62 406-471 355-440 (620)
36 4gs5_A Acyl-COA synthetase (AM 98.9 3.3E-09 1.1E-13 112.1 12.3 61 406-472 210-272 (358)
37 1v25_A Long-chain-fatty-acid-C 98.9 2.6E-09 9E-14 118.6 11.4 60 409-472 381-457 (541)
38 2vsq_A Surfactin synthetase su 98.8 7.7E-08 2.6E-12 117.8 19.5 62 406-471 798-882 (1304)
39 3t5a_A Long-chain-fatty-acid-- 98.0 3.6E-05 1.2E-09 83.1 12.0 26 99-125 184-209 (480)
40 3lax_A Phenylacetate-coenzyme 97.3 0.00034 1.2E-08 60.9 6.8 92 448-560 2-93 (109)
41 3gxs_A Phenylacetate-coenzyme 97.0 0.0024 8.2E-08 55.7 8.4 93 447-560 1-93 (109)
42 3onr_A Protein transport prote 31.2 1.2E+02 0.0041 24.4 6.3 48 459-507 16-64 (72)
43 2cc6_A VNG1446H, dodecin; flav 30.2 1.3E+02 0.0045 23.8 6.3 48 459-507 14-62 (68)
44 2ux9_A Dodecin; flavoprotein; 22.0 1.3E+02 0.0045 23.9 4.9 48 459-507 16-64 (69)
45 4he6_A Peptidase family U32; u 21.9 90 0.0031 25.4 4.2 33 424-460 29-61 (89)
46 2vxa_A Dodecin; flavoprotein, 21.5 1.3E+02 0.0046 24.1 4.9 48 459-507 17-65 (72)
47 2yiz_A Dodecin; flavoprotein, 21.3 1.4E+02 0.0047 23.8 4.9 48 459-507 16-64 (69)
No 1
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=2.5e-135 Score=1140.60 Aligned_cols=586 Identities=57% Similarity=1.004 Sum_probs=533.4
Q ss_pred CCCCCCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHH
Q 007149 6 PHYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIER 85 (616)
Q Consensus 6 ~~~~~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieR 85 (616)
+..+.++|++.++.||+.++||.++|+++|++||++|++|+|||+ |||+ +|++.+| |+++|||++|||++|||+|
T Consensus 12 ~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~-~gf~-~i~~~~d---F~~~VPv~~Yedl~p~ieR 86 (609)
T 4b2g_A 12 GPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKR-FKLE-GSTVRET---FKSKIPVIKYEDLQPEIQR 86 (609)
T ss_dssp ----CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHT-TCCT-TCCSHHH---HHHHSCCBCHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHh-cCCC-CCCCHHH---HHHhCCCccHHHHHHHHHH
Confidence 345567789999999999999999999999999999999999999 9999 9999999 9999999999999999999
Q ss_pred HHcCCCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCC
Q 007149 86 IANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSG 165 (616)
Q Consensus 86 i~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~G 165 (616)
|++||.++|||++||.+|++|||||+|++|+||+|+++++.+.+++++|..++++++|+++.||.|+|++++.+..|++|
T Consensus 87 i~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G 166 (609)
T 4b2g_A 87 IANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGG 166 (609)
T ss_dssp HHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTS
T ss_pred HhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCC
Confidence 99999889999999999999999999999999999999999888899999999999999888999999888888899999
Q ss_pred ceeeeccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHH
Q 007149 166 LMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWK 245 (616)
Q Consensus 166 i~~G~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~ 245 (616)
+++|++|+.+++|+.|+++|.++...|++|.+++.++|..+++||||||||.++++|+.|+++|+++|+++++.|+++|+
T Consensus 167 i~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~We 246 (609)
T 4b2g_A 167 LLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWH 246 (609)
T ss_dssp CEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhh
Q 007149 246 ELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFY 325 (616)
Q Consensus 246 el~~dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~ 325 (616)
+||+||++||++++++++++|++++..++ |+|++|++|+++|++.+|.|++++|||||++|+||++|+|++|+++|+++
T Consensus 247 el~~dI~~gtl~~~it~~~~r~a~~~~ls-p~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~ 325 (609)
T 4b2g_A 247 QLTHDIRTGTLSPKITDPSVRNCVAGVLK-PDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYY 325 (609)
T ss_dssp HHHHHHHHTCCCTTCCCHHHHHHTTTTCC-CCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHH
T ss_pred HHHHHHHhccCCcCCCCHHHHHHHhcCCC-cCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHH
Confidence 99999999999999999999999999898 99999999999999977999999999999999999999999999999999
Q ss_pred cCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccc
Q 007149 326 SGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTN 405 (616)
Q Consensus 326 ~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~e 405 (616)
+|++|+++++|+||||+||+|++|.|+|+..+|+|+|+.+||||||+++.+.. .++ .+++++|+++|
T Consensus 326 ~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~-----------~~~--~~~~~~v~l~e 392 (609)
T 4b2g_A 326 SGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP-----------LSR--DSPPRLVDLAH 392 (609)
T ss_dssp HTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC-----------CCS--SSCCCCEEGGG
T ss_pred cCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc-----------ccc--CCCCccccHhH
Confidence 99999999999999999999999999988899999999999999998864100 000 24478999999
Q ss_pred cCCCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEe
Q 007149 406 VKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTE 485 (616)
Q Consensus 406 v~~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~ 485 (616)
||+|++|||||||++||||||+||+|+|+||++++|+|+|+||++++||++||||+|++|++||.+|++.|+++|+.|.|
T Consensus 393 Ve~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~e 472 (609)
T 4b2g_A 393 VEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVE 472 (609)
T ss_dssp CCTTCEEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEE
T ss_pred cCCCCeEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred EEEeecCCCCCceEEEEEEEeec-CCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHHHH
Q 007149 486 YTAYADTCSIPGHYVVFWELKSK-GSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDALMD 564 (616)
Q Consensus 486 f~~~~~~~~~~~~Y~l~~ele~~-~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~~~ 564 (616)
||+++|.++.||||+||||+++. +. ..++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|++
T Consensus 473 ft~~~d~~~~p~Hyv~~wEl~~~~~~---~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~ 549 (609)
T 4b2g_A 473 YTSFADTKTIPGHYVIYWELLVKDSA---NSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMD 549 (609)
T ss_dssp EEEEEECSSSSCEEEEEEEEEESCGG---GCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC---
T ss_pred EEEecCCCCCCCcEEEEEEEeccccc---CCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHH
Confidence 99999888889999999999741 11 145678999999999999999999999777899999999999999999999
Q ss_pred HHHhcCCCCCCccCCcccCCHHHHHHHhcccceeeeccCCCCCccCCcc
Q 007149 565 FSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFSKRVPSWEPFGIT 613 (616)
Q Consensus 565 ~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 613 (616)
+++++|+++||||+|||+++++++++|+++|+++|||+++|.|.|....
T Consensus 550 ~~~~~G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~ 598 (609)
T 4b2g_A 550 YAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRR 598 (609)
T ss_dssp -------------CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC-
T ss_pred HHHhCCCCCCCcCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccch
Confidence 9999999999999999999999999999999999999999999998653
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=1.5e-133 Score=1124.40 Aligned_cols=563 Identities=59% Similarity=1.025 Sum_probs=476.6
Q ss_pred CCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCCCChhhHHhhhhcCCCccccchhHHHHHHHcC
Q 007149 10 PNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANG 89 (616)
Q Consensus 10 ~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~G 89 (616)
.++|++.++.||+.++||.++|+++|++||++|++|+|||+ | |+ +|+++++ ||++|||++|||++|||+||++|
T Consensus 11 ~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~-~-f~-~i~~~~~---F~~~VPi~~Yedl~pyIeRi~~G 84 (581)
T 4eql_A 11 FDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQR-F-LI-DRFDKEL---FKKNVPIVSYEDIKPYLDRVVNG 84 (581)
T ss_dssp ---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHH-T-TC-CSCCHHH---HHHHSCCBCHHHHHHHHHHHHTT
T ss_pred cCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHH-H-hh-cCCCHHH---HHHhCCCccHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999999999999 9 99 9999999 99999999999999999999999
Q ss_pred CCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceee
Q 007149 90 EPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMAR 169 (616)
Q Consensus 90 e~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G 169 (616)
|.++|||++||.+|++|||||+|++|+||+|+++++.+.+++++|..++++++|.++.||.|++++.+.+.+|++|+|+|
T Consensus 85 e~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g 164 (581)
T 4eql_A 85 ESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPAR 164 (581)
T ss_dssp CCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEE
T ss_pred CCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeec
Confidence 98899999999999999999999999999999999998888999999999999998899999999888888999999999
Q ss_pred eccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHH
Q 007149 170 PVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCS 249 (616)
Q Consensus 170 ~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~ 249 (616)
++|+.+++|+.|+++|.++...|++|.+++.++|..+++||||||||.++++|+.|+++|+++|+++++.|+++|++||+
T Consensus 165 ~~s~~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~ 244 (581)
T 4eql_A 165 VATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCS 244 (581)
T ss_dssp CHHHHHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccchhchHHHHHhhcCCC
Q 007149 250 NIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSMAQYIPILEFYSGGL 329 (616)
Q Consensus 250 dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~~~~ 329 (616)
||++|+++++|+++++|++|..+|++|||++|++|+++|++.+|.|++++|||||++|+||++|+|++|+++|++++|++
T Consensus 245 dI~~gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~~ 324 (581)
T 4eql_A 245 NIRSGHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDL 324 (581)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTTC
T ss_pred HHHhCCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCC
Confidence 99999999999999999999999988999999999999998779999999999999999999999999999999999999
Q ss_pred CeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCC
Q 007149 330 PLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLG 409 (616)
Q Consensus 330 ~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G 409 (616)
|+++++|+||||+||+|+++.|+++..+|+|+|+.+||||||+++.+ ++++++++|||+|
T Consensus 325 p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~--------------------~~~~v~l~eVe~G 384 (581)
T 4eql_A 325 PLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD--------------------KNDVVDLEDVKLG 384 (581)
T ss_dssp CEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTC--------------------CSSCEEGGGCCTT
T ss_pred ccccCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccC--------------------CCcEeCHHHcCCC
Confidence 99999999999999999999999888899999999999999988632 2579999999999
Q ss_pred ceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEe
Q 007149 410 HCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAY 489 (616)
Q Consensus 410 ~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~ 489 (616)
++|||||||.+||||||+||+|+|+||++++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|+.|.|||++
T Consensus 385 ~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~ 464 (581)
T 4eql_A 385 CTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSY 464 (581)
T ss_dssp CEEEEEEECSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEE
T ss_pred ceEEEEEeeccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred ecCCCCCceEEEEEEEee-c------CCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHHH
Q 007149 490 ADTCSIPGHYVVFWELKS-K------GSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDAL 562 (616)
Q Consensus 490 ~~~~~~~~~Y~l~~ele~-~------~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~~ 562 (616)
+|.++.||||+||||+++ + +. ..++++++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|
T Consensus 465 ~~~~~~p~Hy~~~wel~~~~~~~~~~~~---~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~ 541 (581)
T 4eql_A 465 ADTSTFPGHYVVYLEVDTKEGEEKETAQ---FELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSL 541 (581)
T ss_dssp EECSSSSBEEEEECC------------------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC---------
T ss_pred cCCCCCCCeEEEEEEEeccccccccccc---CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHH
Confidence 988888999999999975 1 01 1345689999999999999999999997778999999999999999999
Q ss_pred HHHHHhcCCCCCCccCCcccCCHHHHHHHhcccceeeec
Q 007149 563 MDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVVGRFFS 601 (616)
Q Consensus 563 ~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~~~~~~ 601 (616)
+++++++|+++||||+|||+++++++++|+++|+++|||
T Consensus 542 ~~~~~~~G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 542 MDFFISQGASTGQYKTPRCIKSGKALQVLETCVVAKFFS 580 (581)
T ss_dssp -----------------------------------CEEC
T ss_pred HHHHHhCCCCCCCcCCCcccCCHHHHHHHHhcchheeec
Confidence 999999999999999999999999999999999999998
No 3
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-132 Score=1112.35 Aligned_cols=565 Identities=38% Similarity=0.696 Sum_probs=523.8
Q ss_pred CCCCCCcHHHHHHHHHHHhcHHHHHHHHHHHHHHhccCChhhhhhcCCCCCC-CChh-hHHhhhhcCCCccccchhHHHH
Q 007149 7 HYDPNDNEAGMKLLEDLTTNAYQIQLQVLKEILTRNAKTEYLKGYFNLNIGH-FDVD-VLQVFKKNVPVVNYEDIKPYIE 84 (616)
Q Consensus 7 ~~~~~~~~~~~~~fe~~~~~~~~~Q~~~L~~iL~~~~~T~ygr~~~gf~~~i-~~~e-d~~~f~~~vPi~~Yed~~~yie 84 (616)
.-+.++|++.++.||+.++||.++|+++|++||++|++|+|||+ |||+ +| ++++ + ||++|||++|||++|||+
T Consensus 10 ~~~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~-~gf~-~i~~~~e~d---F~~~VPi~~Yedl~pyIe 84 (581)
T 4epl_A 10 KVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQN-CGLN-GNATDPEEA---FKSMVPLVTDVELEPYIK 84 (581)
T ss_dssp ---CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHT-TTCC-----CHHHH---HHHHSCCBCHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHh-cCCC-cccCCHHHH---HHHhCCCccHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999 9999 99 9999 9 999999999999999999
Q ss_pred HHHcCCCCccccCcccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCC-CCcEEEEEecCCCccCC
Q 007149 85 RIANGEPSDIISAQPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLD-KGKAMYLLFVKPEIRTP 163 (616)
Q Consensus 85 Ri~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~-~gk~L~~~~~~~~~~t~ 163 (616)
||++||.++|||++||.+|++|||||+|++|+||+|+++++.+.+++.++..++++ +|.++ .||.|+|++++.+..|+
T Consensus 85 Ri~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~-~p~l~~~Gk~L~l~~~s~~~~t~ 163 (581)
T 4epl_A 85 RMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNR-DFPIDDNGKALQFIFSSKQYIST 163 (581)
T ss_dssp HHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHH-HSCCCTTCEEEEECCCCCCEECT
T ss_pred HHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhh-CCccccCCcEEEEeecCCcccCC
Confidence 99999988999999999999999999999999999999999988888888887765 88888 89999998889999999
Q ss_pred CCceeeeccccccccccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHH
Q 007149 164 SGLMARPVLTSYYKSNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDY 243 (616)
Q Consensus 164 ~Gi~~G~~S~~~~~~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~ 243 (616)
+|+++|++|+..++|..|+++|..+...|++|.+++.++|..+++||||||||.++++|..|+++|+++|+++++.|+++
T Consensus 164 ~Gi~~G~~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~ 243 (581)
T 4epl_A 164 GGVPVGTATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQV 243 (581)
T ss_dssp TSCEEECHHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHH
T ss_pred CCceeeechhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHH
Confidence 99999999999999999999988778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCCccchhhHHHHhccCCHHHHHHHHHHhcCC-CccccccccCCCCceEEEEEccchhchHHHH
Q 007149 244 WKELCSNIRIGHVSDWITDPSCRNAVSLILGRANQDLANLIENECGGE-SWEGIIKKIWPRTKYIEVIVTGSMAQYIPIL 322 (616)
Q Consensus 244 w~el~~dI~~Gti~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~-~~~g~~~~lWP~l~~i~~~~~G~~~~y~~~l 322 (616)
|++||+||++||++++++++++|.++...++ |+|++|++|+++|++. +|.|++++|||||++|+||++|+|++|+++|
T Consensus 244 We~l~~dI~~gtl~~~it~~~~R~~l~~v~~-p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l 322 (581)
T 4epl_A 244 WEEIVTDIKDGVLSNRITVPSVRTAMSKLLT-PNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKL 322 (581)
T ss_dssp HHHHHHHHHHTCCCTTCCCHHHHHHHHTTCC-CCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHH
T ss_pred HHHHHHHHHhcCCCcCCCCHHHHHHHhCCCC-CCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHH
Confidence 9999999999999999999999999999998 9999999999999886 7999999999999999999999999999999
Q ss_pred HhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceee
Q 007149 323 EFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVD 402 (616)
Q Consensus 323 ~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 402 (616)
++++|++|+++.+|+||||+||+|++|.|+|+..+|+|+|+.+||||||+++.+ .+++++|+
T Consensus 323 ~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~------------------~~~~~~v~ 384 (581)
T 4epl_A 323 RHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETG------------------EGEEKPVG 384 (581)
T ss_dssp HHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC-------------------------CCCEE
T ss_pred HHHcCCCccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEeccccc------------------CCCCceee
Confidence 999999999999999999999999999999888999999999999999988654 23368999
Q ss_pred ccccCCCceeEEEEccccceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCE
Q 007149 403 LTNVKLGHCYELVVTTFTGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFL 482 (616)
Q Consensus 403 l~ev~~G~~yelVvTt~~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~ 482 (616)
++|||+|++|||||||.+||||||+||+|+|+||||++|+|+|+||++++||++|||++|++|++||.+|++.|.++|+.
T Consensus 385 l~eve~G~~YelviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~ 464 (581)
T 4epl_A 385 LTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIE 464 (581)
T ss_dssp GGGCCTTCEEEEEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCCCeEEEEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877778999
Q ss_pred EEeEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhh-ChHHHHhhccCCccCCeEEEEcCCCcHHH
Q 007149 483 LTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESL-DSVYRRCRKKDNSIGPLEIRVVKDGTFDA 561 (616)
Q Consensus 483 l~~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~~g~l~p~~v~~v~~GtF~~ 561 (616)
|.|||+++|.++.|+||+||||++ + .++.+.+++||..||++| |++|+.+| +.|+|+||+|++|++|+|++
T Consensus 465 l~eft~~~d~~~~p~hyv~~wE~~--~-----~~~~~~l~~~~~~Ld~~L~n~~Y~~~R-~~~~L~pl~v~~v~~G~F~~ 536 (581)
T 4epl_A 465 VIDFSSYIDVSTDPGHYAIFWEIS--G-----ETNEDVLQDCCNCLDRAFIDAGYVSSR-KCKTIGALELRVVAKGTFRK 536 (581)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEES--S-----CCCHHHHHHHHHHHHHHCCCHHHHHHH-HHTSSCCCEEEEECTTHHHH
T ss_pred EEEEEEecCCCCCCCcEEEEEeec--C-----CCCHHHHHHHHHHHHHHhCChhHHHHH-hcCCCCCcEEEEeCcchHHH
Confidence 999999998888899999999985 3 346678999999999999 99999999 55799999999999999999
Q ss_pred HHHHHHhcCCCCCCccCCccc--CCHHHHHHHhcccceeeeccCC
Q 007149 562 LMDFSVSQGSSVNQYKTPRCI--KSEEAINLLDSKVVGRFFSKRV 604 (616)
Q Consensus 562 ~~~~~~~~G~~~~Q~K~Pr~~--~~~~~~~~L~~~~~~~~~~~~~ 604 (616)
|+++++++|+++||||+|||+ ++++++++|+++|+++|+|+++
T Consensus 537 l~~~~~~~G~~~~Q~K~PR~~~~~~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 537 IQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp HHHHHHTTC------CCCSSCCTTCHHHHHHHHTTEEEEEECCCC
T ss_pred HHHHHHhCCCCCCCcCCCeeecCCCHHHHHHHHhcccccccCCCC
Confidence 999999999999999999999 9999999999999999999875
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.86 E-value=1.2e-20 Score=203.93 Aligned_cols=383 Identities=19% Similarity=0.208 Sum_probs=218.5
Q ss_pred hcHHHHHHHHHHHHHHhccCChhhhhhc---CCC-CCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCcccc--C-
Q 007149 25 TNAYQIQLQVLKEILTRNAKTEYLKGYF---NLN-IGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIIS--A- 97 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~~~~T~ygr~~~---gf~-~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL~--~- 97 (616)
...++.|.+.|+++++...+++|+++++ |+. .+|.+.+| ++ ++|++++++++.... . ..++ .
T Consensus 17 ~~~~~~q~~~L~~~l~~~~~~p~y~~~~~~~g~~~~~i~~~~d---l~-~lP~~~~~~l~~~~p------~-~~~~~~~~ 85 (436)
T 3qov_A 17 EKLQELQLQRLKKTINIAANSPYYKEVFSKNGITGDSIQSLDD---IR-KIPFTTKSDMRANYP------F-GLVAGDMK 85 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCCTTSCSSSGG---GG-GSCCBCHHHHHHTTT------T-TTCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHH---HH-HCCCCCHHHHHhcCC------C-ccccCCCc
Confidence 4568899999999998668899999732 554 36888899 95 899999999975321 1 1221 2
Q ss_pred cccceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceeeeccccccc
Q 007149 98 QPITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYK 177 (616)
Q Consensus 98 ~pi~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G~~S~~~~~ 177 (616)
+.+.++..||||| |+||-+++|...+....... ...+. .+ ++..+..+... .+. +.-.|..
T Consensus 86 ~~~a~i~~TSGTT-G~PK~v~~th~~~~~~~~~~---~~~~~-~~-~~~~~d~~~~~--~~~-----~~~~~~~------ 146 (436)
T 3qov_A 86 RDGVRIHSSSGTT-GNPTVIVHSQHDLDSWANLV---ARCLY-MV-GIRKTDVFQNS--SGY-----GMFTGGL------ 146 (436)
T ss_dssp HHEEEEEECSCSS-SCCCEEEEEHHHHHHHHHHH---HHHHH-HT-TCCTTSEEEEC--SCC-----TTCHHHH------
T ss_pred CCeEEEEECCCcC-CCCeEEEECHHHHHHHHHHH---HHHHH-Hc-CCCCCCEEEEC--ccc-----ccchhHH------
Confidence 3345778899999 89999999998764422211 10110 11 22233322221 110 0000000
Q ss_pred cccccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007149 178 SNSFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVS 257 (616)
Q Consensus 178 ~~~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~dI~~Gti~ 257 (616)
...+..+..|.. +-. ...+ +-+.+++.|++-.+
T Consensus 147 ----------------------------~~~~~~l~~G~~----~~~-~~~~-------------~~~~~~~~i~~~~~- 179 (436)
T 3qov_A 147 ----------------------------GFQYGAERLGCL----TVP-AAAG-------------NSKRQIKFISDFKT- 179 (436)
T ss_dssp ----------------------------HHHHHHHHHTCE----EEC-CCSC-------------CHHHHHHHHHHHTC-
T ss_pred ----------------------------HHHHHHHHcCCE----EEe-CCCC-------------CHHHHHHHHHHHCC-
Confidence 001111211110 000 0001 11334444544221
Q ss_pred CCCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccch---hchHHHHHhhcCCCCeeec
Q 007149 258 DWITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVST 334 (616)
Q Consensus 258 ~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~ 334 (616)
+- +. ..|..+..|.+..... +. ..-.++ +..+++||. ...++.+++.+ |++++ +
T Consensus 180 ---t~----------~~-~~P~~~~~l~~~~~~~---~~-~~~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~ 236 (436)
T 3qov_A 180 ---TA----------LH-AIPSYAIRLAEVFQEE---GI-DPRETT---LKTLVIGAEPHTDEQRRKIERML-NVKAY-N 236 (436)
T ss_dssp ---CE----------EE-CCHHHHHHHHHHHHHT---TC-CTTSSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-E
T ss_pred ---CE----------EE-ECHHHHHHHHHHHHHc---CC-CcccCC---ccEEEEeCCcCCHHHHHHHHHHh-CccEE-e
Confidence 11 11 3444444444433222 11 111334 556666654 55677788888 88988 9
Q ss_pred ccccccc-ceeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeE
Q 007149 335 MYASSEC-YFGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYE 413 (616)
Q Consensus 335 ~y~asE~-~~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~ye 413 (616)
.||+||+ ..++... |+ ...++++......+|.+++++. ++ |..|+.+|
T Consensus 237 ~YG~TE~~~~~~~~~--~~-~~~g~~~~~~~~~v~i~d~~~g-----------------------~~-----~~~g~~Ge 285 (436)
T 3qov_A 237 SFGMTEMNGPGVAFE--CQ-EQNGMHFWEDCYLVEIIDPETG-----------------------EP-----VPEGEIGE 285 (436)
T ss_dssp EEEEGGGTEEEEEEE--CT-TCSSEEECTTTEEEEEECTTTC-----------------------SB-----CSTTCCEE
T ss_pred cCcchhhcCCeeEEe--cC-CCCeeEEccCceEEEEEECCCC-----------------------CC-----CCCCCceE
Confidence 9999998 3323222 22 3456776656677888875431 22 46899999
Q ss_pred EEEcccc----ceeccccCCEEEEecccCC------CCeE-EEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCE
Q 007149 414 LVVTTFT----GLYRYRVGDILMVTGFHNN------APQF-WFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFL 482 (616)
Q Consensus 414 lVvTt~~----GlyRYr~GDvv~v~gf~~~------~P~i-~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~ 482 (616)
|+||+.. ...||+|||++++.. ++ .|++ .|+||.+|+++++|+++++.+|+.+|.+. .++.
T Consensus 286 l~v~~~~~~~~~~~~y~TGDl~~~~~--~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~------p~v~ 357 (436)
T 3qov_A 286 LVLTTLDREMMPLIRYRTRDLTRILP--GKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQF------PELG 357 (436)
T ss_dssp EEEEESSCCSSCCCSEEEEEEECEEC--SCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTC------TTEE
T ss_pred EEEeccCcCCceEEEEEcCCEEEEcC--CCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhC------cCcC
Confidence 9998642 256899999999985 33 4556 99999999999999999999999999652 2221
Q ss_pred EEeEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHHH
Q 007149 483 LTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFDA 561 (616)
Q Consensus 483 l~~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~~ 561 (616)
..+.+..+........+++++++ +. ...+....+++.+.|.+.| +... .+ |..|.+|..+.|.+
T Consensus 358 -~~~vv~~~~~~~~~~l~a~v~~~--~~---~~~~~~~~~~l~~~l~~~l-------~~~~-~~-p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 358 -SNYLITLETVNNQDEMIVEVELS--DL---STDNYIELEKIRRDIIRQL-------KDEI-LV-TPKVKLVKKGSLPQ 421 (436)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEEC--TT---CCCCHHHHHHHHHHHHHHH-------HHHH-SS-CCEEEEECTTCCC-
T ss_pred -CcEEEEEEcCCCCcEEEEEEEEc--Cc---cccchhhHHHHHHHHHHHH-------HHhc-CC-ceEEEEeCCCcccC
Confidence 12333222222233556777775 22 1122223444555555555 2121 24 66899999888773
No 5
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.84 E-value=3.4e-20 Score=200.54 Aligned_cols=384 Identities=15% Similarity=0.144 Sum_probs=213.5
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChhhhhhc---CCC-CCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCccccCcc
Q 007149 25 TNAYQIQLQVLKEILTR-NAKTEYLKGYF---NLN-IGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQP 99 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~~---gf~-~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL~~~p 99 (616)
...++.|.+.|+++|+. .+++.|+++++ |+. .+|.+.+| |+ ++|+++|++++.... .+- .-...+.
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~d---l~-~lP~~~~~~l~~~~~---~~~--~~~~~~~ 91 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLAD---LS-RFPFTTKGDLRDSYP---FGM--FAVPQDR 91 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGG---GG-GSCCBCHHHHHHTTT---TTT--CSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHH---HH-HCCCCCHHHHHhcCC---Ccc--ccCChhH
Confidence 45778999999999996 67899999832 443 25888899 96 899999999865321 010 1123344
Q ss_pred cceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceeeeccccccccc
Q 007149 100 ITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSN 179 (616)
Q Consensus 100 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G~~S~~~~~~~ 179 (616)
+.++..||||| |+||-+++|...+.......... + ..+ ++..+..+... .+.....+|+
T Consensus 92 ~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~---~-~~~-~~~~~d~~~~~--~~~~~~~~~~------------- 150 (437)
T 2y27_A 92 ISRIHASSGTT-GKPTVVGYTAADIDTWANLVARS---I-RAA-GARRGDKVHVS--YGYGLFTGGL------------- 150 (437)
T ss_dssp CCEEEECCCTT-SSCCEEEECHHHHHHHHHHHHHH---H-HHT-TCCTTCEEEEC--SCCSSSHHHH-------------
T ss_pred eEEEEECCCCC-CCceEEecCHHHHHHHHHHHHHH---H-HHc-CCCCCCEEEEc--ccccccccch-------------
Confidence 55788899999 89999999998765432211111 0 011 12223322211 1100000000
Q ss_pred cccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEE-eecHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007149 180 SFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVG-AVFASAFLRAIKFLEDYWKELCSNIRIGHVSD 258 (616)
Q Consensus 180 ~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~-a~f~~~ll~~~~~le~~w~el~~dI~~Gti~~ 258 (616)
...+..++.|. ..+. ..+ +.+.+++.|++..+
T Consensus 151 --------------------------~~~~~~~~~G~------~~~~~~~~-------------~~~~~~~~i~~~~~-- 183 (437)
T 2y27_A 151 --------------------------GAHYGAERAGL------TVIPFGGG-------------QTEKQVQLIQDFRP-- 183 (437)
T ss_dssp --------------------------HHHHHHHHTTC------EEECCCSC-------------CHHHHHHHHHHHCC--
T ss_pred --------------------------HHHHHHHHcCC------EEEeCCCC-------------CHHHHHHHHHHhCC--
Confidence 00111111111 0000 000 12344455554221
Q ss_pred CCCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccch---hchHHHHHhhcCCCCeeecc
Q 007149 259 WITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVSTM 335 (616)
Q Consensus 259 ~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~ 335 (616)
+- +. ..|..+..|.+..... +.-. -+++ +..+++|+. ...++.+++.+ |++++ +.
T Consensus 184 --t~----------l~-~~Ps~~~~l~~~~~~~---~~~~-~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~ 241 (437)
T 2y27_A 184 --DI----------IM-VTPSYMLSIADEIERQ---GLDP-VQSS---LRIGIFGAEPWTNDMRVAIEQRM-GIDAV-DI 241 (437)
T ss_dssp --SE----------EE-ECHHHHHHHHHHHHHT---TCCG-GGSS---CCEEEEESSCCCHHHHHHHHHHH-TSEEE-EE
T ss_pred --CE----------EE-ECHHHHHHHHHHHHHc---CCCc-ccCC---eeEEEEcCccCCHHHHHHHHHHH-CcCEE-ec
Confidence 11 11 2344444444333221 1111 1456 444555543 55777887778 78888 99
Q ss_pred cccccc-c--eeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCcee
Q 007149 336 YASSEC-Y--FGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCY 412 (616)
Q Consensus 336 y~asE~-~--~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~y 412 (616)
||+||+ . ++++ |+....++++.....++|++++++. ++ |..|+.|
T Consensus 242 YG~TE~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g-----------------------~~-----~~~g~~G 289 (437)
T 2y27_A 242 YGLSEVMGPGVASE----CVETKDGPTIWEDHFYPEIIDPETG-----------------------EV-----LPDGELG 289 (437)
T ss_dssp EEETTTTEEEEEEC----CTTTCSSCEECTTTEEEEEECTTTC-----------------------CB-----CCTTCCE
T ss_pred CCchhhcCCeeEEe----cCCCCCceeEccCceEEEEEcCCCC-----------------------CC-----CCCCCcc
Confidence 999995 2 3432 2222225766556678898875431 22 4689999
Q ss_pred EEEEccccc----eeccccCCEEEEecc-cCCCCeE-EEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeE
Q 007149 413 ELVVTTFTG----LYRYRVGDILMVTGF-HNNAPQF-WFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEY 486 (616)
Q Consensus 413 elVvTt~~G----lyRYr~GDvv~v~gf-~~~~P~i-~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f 486 (616)
||+||+... +.||+|||++++... -...|+| .|+||.+|+++++|+++++.+|+.+|.+.. ++. ..+
T Consensus 290 el~v~~~t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p------~V~-~~~ 362 (437)
T 2y27_A 290 ELVFTSLTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQR------ALA-PHY 362 (437)
T ss_dssp EEEEEESSCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCT------TBC-SCC
T ss_pred EEEEecCCcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCc------CcC-ccE
Confidence 999997543 678999999999852 1235777 899999999999999999999999996531 211 022
Q ss_pred EEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHH
Q 007149 487 TAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFD 560 (616)
Q Consensus 487 ~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~ 560 (616)
.+..+........++++++.. +. ..+....+++.+.+.+.| .... .+ |..|.+|..+.|.
T Consensus 363 vv~~~~~~~~~~l~a~v~~~~-~~----~~~~~~~~~l~~~l~~~l-------~~~~-~~-p~~v~~v~~~~lP 422 (437)
T 2y27_A 363 QIVLTKEGPLDVLTLNVEPCP-ET----APDTAAIQVAKQALAYDI-------KSLI-GV-TAVINVLPVNGIE 422 (437)
T ss_dssp EEEEEEETTEEEEEEEECBCT-TT----TTCHHHHHHHHHHHHHHH-------HHHH-CC-CEEEEECCTTCSC
T ss_pred EEEEeecCCCceEEEEEEECC-Cc----cchhhhHHHHHHHHHHHH-------HHhc-CC-ceEEEEeCCCCcc
Confidence 222221112234556666541 11 111122334444554444 2111 13 6678888877766
No 6
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.84 E-value=1.1e-19 Score=196.84 Aligned_cols=386 Identities=14% Similarity=0.123 Sum_probs=213.5
Q ss_pred hcHHHHHHHHHHHHHHh-ccCChhhhhhc---CCC-CCCCChhhHHhhhhcCCCccccchhHHHHHHHcCCCCccccCcc
Q 007149 25 TNAYQIQLQVLKEILTR-NAKTEYLKGYF---NLN-IGHFDVDVLQVFKKNVPVVNYEDIKPYIERIANGEPSDIISAQP 99 (616)
Q Consensus 25 ~~~~~~Q~~~L~~iL~~-~~~T~ygr~~~---gf~-~~i~~~ed~~~f~~~vPi~~Yed~~~yieRi~~Ge~~~lL~~~p 99 (616)
...++.|.+.|+++|+. .+++.|+++.+ |+. .+|.+++| |+ ++|+++|++++.... .+- .-...+.
T Consensus 23 ~~~~~~q~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~d---l~-~lP~~~~~~l~~~~p---~~~--~~~~~~~ 93 (443)
T 2y4o_A 23 DELQALQLERLKWSLRHAYDNVPHYRRTFDAAGVHPDDLKSLAD---LA-KFPFSTKNDLRDNYP---FGL--FAVPREQ 93 (443)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCCSGGG---GG-GSCCBCHHHHHTTTT---TTT--CSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHcCCChhhCCCHHH---HH-HCCCCcHHHHHhhCC---Ccc--cCCChhh
Confidence 44778999999999996 57899999832 553 26888899 95 899999999975321 010 1123444
Q ss_pred cceeecccccCCCCCccccCChHHHHHHHHHHHHHHHHHhhcCCCCCCCcEEEEEecCCCccCCCCceeeeccccccccc
Q 007149 100 ITEFLTSSGTSGGQPKMMPSTDEDLERKTFFYNMLIPVMNKYVDDLDKGKAMYLLFVKPEIRTPSGLMARPVLTSYYKSN 179 (616)
Q Consensus 100 i~~f~~TSGTT~G~~K~IP~T~~~l~~~~~~~~~~~~~~~~~~p~~~~gk~L~~~~~~~~~~t~~Gi~~G~~S~~~~~~~ 179 (616)
+.++..||||| |+||-+++|...+.......... + ..+ ++..+..+... .+. +.-.+..
T Consensus 94 ~~~i~~TSGTT-G~PK~v~~t~~~~~~~~~~~~~~---~-~~~-~~~~~d~~l~~--~~~-----~~~~~~~-------- 152 (443)
T 2y4o_A 94 VVRVHASSGTT-GKPTVVGYTARDIDTWANVTARS---I-RAA-GGRPGDTLHNA--FGY-----GLFTGGL-------- 152 (443)
T ss_dssp CCEEEEECCSS-SSCEEEEECHHHHHHHHHHHHHH---H-HHT-TCCTTCEEEEC--SCC-----SSSHHHH--------
T ss_pred eEEEEECCCCC-CCceEEecCHHHHHHHHHHHHHH---H-HHc-CCCCCCEEEEe--ccC-----cccccHH--------
Confidence 55788899999 89999999998765432211111 0 011 12223222211 110 0000000
Q ss_pred cccCccccccccccCCcccccCCChhhhHHHHHHhhhcccCcceEEEeecHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007149 180 SFRNRPFNRYNVYTSPDETILCPDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDYWKELCSNIRIGHVSDW 259 (616)
Q Consensus 180 ~~~~~~~~~~~~~~~P~ev~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~f~~~ll~~~~~le~~w~el~~dI~~Gti~~~ 259 (616)
...+..++.|-. +-.+ ..+ +-+++++.|++..+
T Consensus 153 --------------------------~~~~~~~~~G~~----~~~~-~~~-------------~~~~~~~~i~~~~~--- 185 (443)
T 2y4o_A 153 --------------------------GIHYGAERLGCM----VVPM-SGG-------------QTEKQVQLIRDFEP--- 185 (443)
T ss_dssp --------------------------HHHHHHHHHTCE----EECC-CSC-------------CHHHHHHHHHHHCC---
T ss_pred --------------------------HHHHHHHHcCCE----EEEC-CCC-------------CHHHHHHHHHHhCC---
Confidence 001111111110 0000 000 12334444444221
Q ss_pred CCCccchhhHHHHhccCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEEccch---hchHHHHHhhcCCCCeeeccc
Q 007149 260 ITDPSCRNAVSLILGRANQDLANLIENECGGESWEGIIKKIWPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMY 336 (616)
Q Consensus 260 i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~g~~~~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y 336 (616)
+-.. ..|..+..|.+..... +.-. -+++ +..+++||. ...++.+++.+ |++++ +.|
T Consensus 186 -t~l~-----------~~Ps~~~~l~~~~~~~---~~~~-~~~~---lr~i~~gGe~l~~~~~~~~~~~~-g~~v~-~~Y 244 (443)
T 2y4o_A 186 -KIIL-----------VTPSYMLNLIDEMVRQ---GMDP-AESS---LKIGIFGAEPWTQALRNEVETRV-GIDAL-DIY 244 (443)
T ss_dssp -SEEE-----------ECHHHHHHHHHHHHHT---TCCG-GGSS---CCEEEEESSCCCHHHHHHHHHHH-TCEEE-EEE
T ss_pred -cEEE-----------ECHHHHHHHHHHHHHc---CCCc-ccCC---ceEEEECCCcCCHHHHHHHHHHh-CcCEE-ecc
Confidence 1111 2344444444333221 1111 1355 444555553 55778888888 78888 999
Q ss_pred ccccc-c--eeecCCCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeE
Q 007149 337 ASSEC-Y--FGINFKPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYE 413 (616)
Q Consensus 337 ~asE~-~--~~i~~~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~ye 413 (616)
|+||+ . ++.. |+....++++.....++|++++++. ++ |..|+.||
T Consensus 245 G~TE~~g~~~~~~----~~~~~~g~~~~~~~~~~~i~d~~~g-----------------------~~-----~~~G~~Ge 292 (443)
T 2y4o_A 245 GLSEVMGPGVACE----CVETKDGPVIWEDHFYPEIIDPVTG-----------------------EV-----LPDGSQGE 292 (443)
T ss_dssp EETTTTEEEEEEE----CTTTCCSEEECTTTEEEEEECTTTC-----------------------CB-----CCTTCCEE
T ss_pred CchhhcCCeEEec----cCCCCCceEEccCCeEEEEEcCCCC-----------------------CC-----CCCCCceE
Confidence 99995 3 3432 2222226776556678888875431 23 46899999
Q ss_pred EEEccccc----eeccccCCEEEEecc-cCCCCeE-EEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEE
Q 007149 414 LVVTTFTG----LYRYRVGDILMVTGF-HNNAPQF-WFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYT 487 (616)
Q Consensus 414 lVvTt~~G----lyRYr~GDvv~v~gf-~~~~P~i-~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~ 487 (616)
|+||+... +.||+|||++++..- -...|+| .|+||.+|+++++|+++++.+|+.+|.+. .++. ..+.
T Consensus 293 l~v~~~t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~------p~V~-~~~v 365 (443)
T 2y4o_A 293 LVFTSLTKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVAL------PLLS-GQFQ 365 (443)
T ss_dssp EEEEESSCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTS------TTEE-EEEE
T ss_pred EEEeCCCcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhC------cCcC-ccEE
Confidence 99996533 568999999999851 0123667 89999999999999999999999999652 2321 1233
Q ss_pred EeecCCCCCceEEEEEEEeec-CCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCCCcHH
Q 007149 488 AYADTCSIPGHYVVFWELKSK-GSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFD 560 (616)
Q Consensus 488 ~~~~~~~~~~~Y~l~~ele~~-~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~ 560 (616)
+...........++++++... +. .......+++.+.+.+.| .... .+ |..|.+|..+.|.
T Consensus 366 v~~~~~~~~~~~~a~v~~~~~~~~----~~~~~~~~~l~~~l~~~l-------~~~~-~~-p~~v~~v~~~~lP 426 (443)
T 2y4o_A 366 ITLSRDGHMDRLDLAVELRSEAAA----SVTDGERAALARELQHRI-------KTMV-GV-SSGVTVLAAGGIP 426 (443)
T ss_dssp EEEEEETTEEEEEEEEEECHHHHT----TCCHHHHHHHHHHHHHHH-------HHHT-CC-CCEEEEECTTCSC
T ss_pred EEEecCCCCceEEEEEEECCcccc----cchhhHHHHHHHHHHHHH-------HHHh-CC-ceEEEEeCCCccc
Confidence 322211122344566666410 00 011223344445555555 2111 23 6688899877776
No 7
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.48 E-value=1.2e-12 Score=138.20 Aligned_cols=87 Identities=13% Similarity=0.234 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHh-cc---CChhhhhhc---CCC--CCCCChhhHHhhhhcCCCccccchhH-HHHHHHcCCCCccccCcc
Q 007149 30 IQLQVLKEILTR-NA---KTEYLKGYF---NLN--IGHFDVDVLQVFKKNVPVVNYEDIKP-YIERIANGEPSDIISAQP 99 (616)
Q Consensus 30 ~Q~~~L~~iL~~-~~---~T~ygr~~~---gf~--~~i~~~ed~~~f~~~vPi~~Yed~~~-yieRi~~Ge~~~lL~~~p 99 (616)
.+++.|+++++. .. +++|||+++ |+. .+|++.+| ++ ++|+++ ++++. +.+.+.. .. +..+.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~p~Yr~~~~~~g~~p~~~i~~~~d---l~-~lP~~~-~~l~~~~~~~~~p---~~-~~~~~ 92 (369)
T 3hgu_A 22 DTNNFVQALMRWHFSKETGSPFWLGMREQLNFDPIKDVKTIND---LR-QFSDIS-HCLRQEPVANLVP---QG-LPADS 92 (369)
T ss_dssp CHHHHHHHHHHHHHSTTTSCHHHHHHGGGSSSCHHHHCCSTGG---GG-GSCCCG-GGGTTSCGGGGSC---TT-SCTTC
T ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHhcCCChhHhCCCHHH---Hh-hCCCch-hhhhcCCHHHcCC---cc-CCccc
Confidence 577889999985 56 899999833 553 26778888 94 799999 99876 3332211 01 13455
Q ss_pred cceeecccccCCCCCccccCChHHHHH
Q 007149 100 ITEFLTSSGTSGGQPKMMPSTDEDLER 126 (616)
Q Consensus 100 i~~f~~TSGTT~G~~K~IP~T~~~l~~ 126 (616)
+.+...||||| |+||-+.+|...+..
T Consensus 93 ~a~i~~TSGTT-G~PKgv~~t~~~~~~ 118 (369)
T 3hgu_A 93 HPQVYESGGTT-GAPKYVVAYDAWIEA 118 (369)
T ss_dssp CCEEEEECC----CCEEEEECHHHHHH
T ss_pred cEEEEECCCCC-CCCCEEEECHHHHHH
Confidence 56788999999 899999999987643
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.39 E-value=6.3e-12 Score=141.29 Aligned_cols=128 Identities=18% Similarity=0.314 Sum_probs=86.8
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC--CCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK--PSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~--~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++||. ...++++++.+ |++++ +.||.||+.+.+...+..+ +...+. .+|+. -++.++.+
T Consensus 343 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~~-------- 410 (580)
T 3etc_A 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDRD-------- 410 (580)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECTT--------
T ss_pred ceEEEEccCCCCHHHHHHHHHHh-CCeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECCC--------
Confidence 556666664 44456666667 78888 9999999954432222111 111222 22322 23444322
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEccc--------cceec-------------cccCCEEEEecccCCC
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTTF--------TGLYR-------------YRVGDILMVTGFHNNA 440 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt~--------~GlyR-------------Yr~GDvv~v~gf~~~~ 440 (616)
.+ .|++|+.+||+|++. .|+|+ |||||++++.. .
T Consensus 411 ----------------g~-----~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----d 465 (580)
T 3etc_A 411 ----------------GR-----LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----D 465 (580)
T ss_dssp ----------------SC-----BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----T
T ss_pred ----------------CC-----CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----C
Confidence 12 357899999999853 34544 99999999973 5
Q ss_pred CeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 441 PQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 441 P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
..+.|+||.+|++++.|+++.+.+||.+|.+
T Consensus 466 G~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 466 GYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp SCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred CcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 6899999999999999999999999999965
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.36 E-value=2.5e-11 Score=135.20 Aligned_cols=130 Identities=15% Similarity=0.160 Sum_probs=88.0
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC--CCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC--KPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~--~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+. ...++.+++.+|+++++ +.||.||+...+...+.. .+...+. .+|+ .-.+.+++++
T Consensus 311 lr~i~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~-~~~~i~d~~~------- 380 (548)
T 2d1s_A 311 LVEIASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVPL-FKAKVIDLDT------- 380 (548)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECTT-CEEEEECTTT-------
T ss_pred eeEEEEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCc-cCCC-ceEEEEeCCc-------
Confidence 445556654 45667777888888888 999999984332211111 1111222 2232 2344444321
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee--------------ccccCCEEEEecccCCCCeEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY--------------RYRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly--------------RYr~GDvv~v~gf~~~~P~i~ 444 (616)
.+ .|..|+.+||+|+. ..|+| .|||||++++.. ...+.
T Consensus 381 ----------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~ 435 (548)
T 2d1s_A 381 ----------------KK-----SLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFF 435 (548)
T ss_dssp ----------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEE
T ss_pred ----------------Cc-----cCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEE
Confidence 12 25789999999985 34544 399999999973 45899
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.+++++++|+++++.+||.+|.+
T Consensus 436 ~~GR~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 436 IVDRLKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp EEEEGGGCBCBTTCCBCHHHHHHHHHT
T ss_pred EeccccceEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.34 E-value=7.4e-11 Score=129.90 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=85.9
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCC-c-eeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDV-S-YTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~-~-~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+. ....+.++..+ +++++ +.||.||+.+.... +....... . -..+|+ .-.+.++++.
T Consensus 270 lr~~~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~-~~~~~~~~~~~G~p~~~-~~~~i~d~~~------- 338 (503)
T 4fuq_A 270 MRLFISGSAPLLADTHREWSAKT-GHAVL-ERYGMTETNMNTSN-PYDGDRVPGAVGPALPG-VSARVTDPET------- 338 (503)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-ECCEETTTEECBCC-CSSSCCCTTEEEEBCTT-CEEEEECTTT-------
T ss_pred cEEEEECCCCCCHHHHHHHHHHh-CCCcc-ceEcccccCccccc-CCCCCCcCCccccCCCC-eEEEEEECCC-------
Confidence 555666664 44455666666 68888 99999998543211 11000000 0 011222 2233343221
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
.+ .|..|+.+||+|+. ..|+|+ |||||++++.. ...+.
T Consensus 339 ----------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~ 393 (503)
T 4fuq_A 339 ----------------GK-----ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVH 393 (503)
T ss_dssp ----------------CC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEE
T ss_pred ----------------CC-----CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEE
Confidence 12 35789999999974 466654 99999999973 56999
Q ss_pred EEeecCceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||.+++++++|+++.+.+||.+|.+
T Consensus 394 ~~GR~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 394 ILGRGKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp ECCSSTTCEEETTEEECHHHHHHHHHT
T ss_pred EEecCCCEEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999965
No 11
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.33 E-value=1.1e-10 Score=128.61 Aligned_cols=133 Identities=15% Similarity=0.202 Sum_probs=87.4
Q ss_pred ccCCCCceEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecC---CC----CCCCCCCceeecCCceEEE
Q 007149 299 KIWPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINF---KP----LCKPSDVSYTLLPNMAYFE 368 (616)
Q Consensus 299 ~lWP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~---~~----~~~~~~~~~~l~~~~~~~E 368 (616)
...+.+ ..+++|+. ....+.+++.+++++++ +.||.||+...+.. .. .+.....+. ..|+. -++
T Consensus 257 ~~~~~l---~~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~ 330 (511)
T 3e7w_A 257 DLLPHA---DTFMFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDM-NIF 330 (511)
T ss_dssp TTCTTC---CEEEECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTC-EEE
T ss_pred ccCCcc---cEEEEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCCC-EEE
Confidence 334554 44455553 45567777888899999 99999998432210 00 000001122 12322 233
Q ss_pred EEeCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---cccee-----------------ccccC
Q 007149 369 FLPVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLY-----------------RYRVG 428 (616)
Q Consensus 369 Fip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~Gly-----------------RYr~G 428 (616)
.++.+ .+ .|..|+.+||+|+. ..|+| .||||
T Consensus 331 i~d~~------------------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG 381 (511)
T 3e7w_A 331 IMDEE------------------------GQ-----PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG 381 (511)
T ss_dssp EECTT------------------------SC-----BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred EECCC------------------------CC-----CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence 33321 12 35789999999974 34443 59999
Q ss_pred CEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 429 DILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 429 Dvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|++++. ...+.|+||.+|+++++|+++++.+||.+|.+
T Consensus 382 Dlg~~~-----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 382 DAGFIQ-----DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp EEEEEE-----TTEEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred CeEEcc-----CCeEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 999884 35899999999999999999999999999976
No 12
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.32 E-value=2.9e-11 Score=134.09 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=87.8
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeecccccccccee--ecC----CCC-CCCCCCceeecCCceEEEEEeCCCCC
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFG--INF----KPL-CKPSDVSYTLLPNMAYFEFLPVEKSN 376 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~--i~~----~~~-~~~~~~~~~l~~~~~~~EFip~~~~~ 376 (616)
+..+++|+. ....+.+++.+++++++ +.||.||+... ... .+. ..+...+. .+|+. -.+.++++.
T Consensus 299 lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~~-- 373 (536)
T 3ni2_A 299 LRMIKSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNA-EMKIVDPET-- 373 (536)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEECTTT--
T ss_pred ceEEEECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCCc-EEEEEeCCC--
Confidence 555666664 44567777888899998 99999998532 211 000 01111122 22222 334444321
Q ss_pred CcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCC
Q 007149 377 GELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNN 439 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~ 439 (616)
.+ .|..|+.+||+|+. ..|+|+ |||||++++..
T Consensus 374 ---------------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~---- 423 (536)
T 3ni2_A 374 ---------------------GA-----SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD---- 423 (536)
T ss_dssp ---------------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred ---------------------Cc-----CCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----
Confidence 12 25789999999984 355553 99999999973
Q ss_pred CCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 440 APQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 440 ~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
...+.|+||.+|+++++|+++++.+||.+|.+
T Consensus 424 dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 424 DDELFIVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp TSCEEEEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred CceEEEEecccceEEECCEEECHHHHHHHHHh
Confidence 56899999999999999999999999999865
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.31 E-value=3.4e-11 Score=132.56 Aligned_cols=131 Identities=13% Similarity=0.159 Sum_probs=86.2
Q ss_pred CCCCceEEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC-------CCCCCceeecCCceEEEEE
Q 007149 301 WPRTKYIEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC-------KPSDVSYTLLPNMAYFEFL 370 (616)
Q Consensus 301 WP~l~~i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~-------~~~~~~~~l~~~~~~~EFi 370 (616)
.|+ +..+++|+. ....+++++.+++++++ +.||+||+...+...+.. .....+. ..++. -...+
T Consensus 260 ~~~---lr~~~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~ 333 (512)
T 3fce_A 260 LPN---MKTFLFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY-CKSDC-RLLIM 333 (512)
T ss_dssp STT---CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEE-ECTTC-EEEEE
T ss_pred Ccc---ccEEEEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCCcccc-ccCCc-EEEEE
Confidence 455 444555553 45567777888899999 999999985422110000 0001122 11221 22223
Q ss_pred eCCCCCCcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-----------------cccCCE
Q 007149 371 PVEKSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-----------------YRVGDI 430 (616)
Q Consensus 371 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-----------------Yr~GDv 430 (616)
+.+ .+ .+..|+.+||+|+. ..|+|. |||||+
T Consensus 334 d~~------------------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDl 384 (512)
T 3fce_A 334 KED------------------------GT-----IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDA 384 (512)
T ss_dssp CSS------------------------SC-----BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEE
T ss_pred CCC------------------------CC-----CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCce
Confidence 211 12 25689999999974 456652 999999
Q ss_pred EEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 431 LMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 431 v~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+++. ...+.|+||.+|+++++|+++++.+||.+|.+
T Consensus 385 g~~~-----dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 385 GYVE-----NGLLFYNGRLDFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp EEEE-----TTEEEEEEEGGGCEEETTEEECHHHHHHHHHH
T ss_pred EEec-----CCEEEEecccCCEEEECCEEECHHHHHHHHHh
Confidence 9873 35899999999999999999999999999976
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.29 E-value=9.9e-11 Score=128.70 Aligned_cols=129 Identities=12% Similarity=0.210 Sum_probs=85.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCCceeecCC-ceEEEEEeCCCCCCcccch
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSYTLLPN-MAYFEFLPVEKSNGELTQE 382 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~~l~~~-~~~~EFip~~~~~~~~~~~ 382 (616)
+..+++|+. ...++.+++.+ +++++ +.||.||+.+.+... . ...+..-.|. ..-...++.+...
T Consensus 274 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~---~~~~~~g~p~~~~~~~i~~~~~~~------ 341 (504)
T 1t5h_X 274 LRHVTFAGATMPDAVLETVHQHL-PGEKV-NIYGTTEAMNSLYMR-Q---PKTGTEMAPGFFSEVRIVRIGGGV------ 341 (504)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHC-CSEEE-EEEEETTTEEEEEEE-S---CSSSSEEBCCTTCCEEEECTTSCT------
T ss_pred ccEEEEcCCcCCHHHHHHHHHhc-Cccee-eeecccccccccccc-C---CCCCccccCCCCCceeEEeccCCC------
Confidence 555666664 44556677777 57787 899999984433211 1 1111111121 1112223221100
Q ss_pred hhcCCCCCCCCCCCCcceeeccccCCCceeEEEEc-c---ccceec-------------cccCCEEEEecccCCCCeEEE
Q 007149 383 FQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVT-T---FTGLYR-------------YRVGDILMVTGFHNNAPQFWF 445 (616)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvT-t---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f 445 (616)
. ..|..|+.+||+|+ . ..|+|+ |||||++++.. ...+.|
T Consensus 342 ---------------~-----~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~ 397 (504)
T 1t5h_X 342 ---------------D-----EIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRI 397 (504)
T ss_dssp ---------------T-----CBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEE
T ss_pred ---------------C-----CcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEE
Confidence 0 23578999999998 3 367776 99999999983 458999
Q ss_pred EeecCceeeccceecCHHHHHHHHHH
Q 007149 446 VHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 446 ~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+||.+++++++|+++++.+||.++.+
T Consensus 398 ~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 398 LGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred eCcccCEEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999964
No 15
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.25 E-value=3.3e-10 Score=125.14 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=83.4
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeecccccccc-ceeecCCC-CCCCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSEC-YFGINFKP-LCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~-~~~i~~~~-~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+. ...++.+++.+ |++++ +.||.||+ .+.+...+ .+.+...+. .+|+ .-++.++.+
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~-~~~~i~d~~-------- 369 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHF-GCEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPG-YEIELRDEA-------- 369 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHH-SCCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTT-CEEEEECTT--------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHh-CCcee-eeEchhhcCceeeccccCCCccCCccc-CCCC-CEEEEECCC--------
Confidence 455556654 44566777777 78888 99999998 33322111 111111222 2232 234444321
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWF 445 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f 445 (616)
.+ .|..|+.+||+|+. ..|+|+ |+|||++++.. ...+.|
T Consensus 370 ----------------g~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~ 424 (529)
T 2v7b_A 370 ----------------GH-----AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVY 424 (529)
T ss_dssp ----------------SC-----BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEE
T ss_pred ----------------CC-----CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEE
Confidence 12 25689999999985 467765 89999999973 568999
Q ss_pred EeecCceeeccceecCHHHHHHHHHH
Q 007149 446 VHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 446 ~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+||.+++++++|+++++.+||.+|.+
T Consensus 425 ~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 425 AGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp EEEGGGCBC----CBCHHHHHHHHTT
T ss_pred eCccCCeEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999965
No 16
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.25 E-value=1.9e-10 Score=126.90 Aligned_cols=131 Identities=17% Similarity=0.234 Sum_probs=82.8
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC--CCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK--PSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~--~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+. ....+.+++.+ +++++ +.||.||+.+.....+... +...+. .+|+. -.+.++.+
T Consensus 274 lr~i~~gg~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~-------- 341 (505)
T 3nyq_A 274 ARLLVSGSAALPVHDHERIAAAT-GRRVI-ERYGMTETLMNTSVRADGEPRAGTVGV-PLPGV-ELRLVEED-------- 341 (505)
T ss_dssp CSEEEECSSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-EEEEC-----------
T ss_pred ceEEEECCCCCCHHHHHHHHHhc-CCeee-cccchhhcccccccCCCCCCCCCCccc-CCCCC-EEEEECCC--------
Confidence 344556654 34456666666 78888 9999999865432221111 111111 12222 23333321
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEE
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFW 444 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~ 444 (616)
.+++. .+..|+.+||+|+. ..|+|. |||||++++.. ...+.
T Consensus 342 ----------------g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~ 399 (505)
T 3nyq_A 342 ----------------GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVR 399 (505)
T ss_dssp ------------------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEE
T ss_pred ----------------CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEE
Confidence 12211 12348899999974 456653 99999999973 56899
Q ss_pred EEeec-CceeeccceecCHHHHHHHHHH
Q 007149 445 FVHRK-NVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 445 f~gR~-~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+||. +++++++|+++.+.+||.+|.+
T Consensus 400 ~~GR~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 400 IVGRKATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp EEEESSCCCEEETTEEECHHHHHHHHTT
T ss_pred EeCCccCceEEeCCEEECHHHHHHHHHH
Confidence 99997 5999999999999999999865
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.23 E-value=2e-11 Score=134.52 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=80.4
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCC-------CCCCCceeecCCceEEEEEeCCCCC
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLC-------KPSDVSYTLLPNMAYFEFLPVEKSN 376 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~-------~~~~~~~~l~~~~~~~EFip~~~~~ 376 (616)
+..++.|+. ....+++.+.+++++++ +.||+||+...+...... .....+. ..|+. -...++.+
T Consensus 266 lr~~~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~--- 339 (521)
T 3l8c_A 266 LTHFYFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDS-PTYIIDED--- 339 (521)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTS-CEEEECTT---
T ss_pred ceEEEEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCC-EEEEECCC---
Confidence 445555554 44556677778899999 999999985432110000 0000111 12221 12223211
Q ss_pred CcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-----------------cccCCEEEEecc
Q 007149 377 GELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-----------------YRVGDILMVTGF 436 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-----------------Yr~GDvv~v~gf 436 (616)
. .+|..|+.+||+|+. ..|+|+ |+|||+++++.
T Consensus 340 ---------------------g-----~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~- 392 (521)
T 3l8c_A 340 ---------------------G-----KELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE- 392 (521)
T ss_dssp ---------------------S-----CBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS-
T ss_pred ---------------------c-----CCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC-
Confidence 1 235789999999975 456653 99999999973
Q ss_pred cCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 437 HNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 437 ~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
...+.|+||.+|+++++|+++++.+||.+|.+
T Consensus 393 ---dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 393 ---DNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp ---SSCEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred ---CCeEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 56899999999999999999999999999965
No 18
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.23 E-value=1.2e-10 Score=129.67 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=33.3
Q ss_pred cCCCceeEEEEcc---cccee---------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY---------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLK 467 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly---------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~ 467 (616)
|..|+.+||+|+. ..|+| .|||||++++.. ...+.|+||.+|+|+++|+++++.+||.
T Consensus 369 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 444 (562)
T 3ite_A 369 VKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDEQVKVRGQRLELGEVSE 444 (562)
T ss_dssp CCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC------------------
T ss_pred CCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccCEEeECcEEECHHHHHH
Confidence 5789999999974 45665 399999999973 5689999999999999999999999999
Q ss_pred HHHHH
Q 007149 468 AVTEA 472 (616)
Q Consensus 468 av~~a 472 (616)
+|.+.
T Consensus 445 ~l~~~ 449 (562)
T 3ite_A 445 VIRSL 449 (562)
T ss_dssp -----
T ss_pred HHHhc
Confidence 99764
No 19
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.23 E-value=3.9e-11 Score=131.96 Aligned_cols=130 Identities=13% Similarity=0.154 Sum_probs=70.0
Q ss_pred EEEEEccchhchHHHHHhhcCCCCeeeccccccccceeecC-CCCCCCCCCceeecCCceEEEEEeCCCCCCcccchhhc
Q 007149 307 IEVIVTGSMAQYIPILEFYSGGLPLVSTMYASSECYFGINF-KPLCKPSDVSYTLLPNMAYFEFLPVEKSNGELTQEFQC 385 (616)
Q Consensus 307 i~~~~~G~~~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~-~~~~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~~~~~ 385 (616)
+..+.+|+.....+.+++.+++++++ +.||.||+...... .....+...+. .+|+. -++.++.+
T Consensus 274 lr~~~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~------------ 338 (509)
T 3ivr_A 274 LRAVTGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDRPKSAGR-PLFWR-TVAVVDAE------------ 338 (509)
T ss_dssp CCEEEEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGSTTSCCE-ECTTC-EEEEECTT------------
T ss_pred hheecccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccCCCcccc-cCCCc-EEEEECCC------------
Confidence 45556676667778888888899998 99999998532211 11111111222 22322 23444322
Q ss_pred CCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeec
Q 007149 386 NGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRK 449 (616)
Q Consensus 386 ~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~ 449 (616)
.+ .|..|+.+||+|+. ..|+|+ |||||++++.. ...+.|+||.
T Consensus 339 ------------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~ 397 (509)
T 3ivr_A 339 ------------DR-----PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRA 397 (509)
T ss_dssp ------------SC-----BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC
T ss_pred ------------CC-----CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCC
Confidence 12 25789999999975 467776 99999999973 5689999999
Q ss_pred --CceeeccceecCHHHHHHHHHHH
Q 007149 450 --NVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 450 --~~~l~~~gek~~e~~v~~av~~a 472 (616)
+++++++|+++++.+||.++.+.
T Consensus 398 d~~d~ik~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 398 PEKELIKTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp -------------------------
T ss_pred CcceeEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999763
No 20
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.23 E-value=3.3e-10 Score=129.04 Aligned_cols=161 Identities=13% Similarity=0.178 Sum_probs=90.9
Q ss_pred cCCCceeEEEEccc-----cceec----------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 406 VKLGHCYELVVTTF-----TGLYR----------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 406 v~~G~~yelVvTt~-----~GlyR----------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
|+.|+.+||+|+.. .|+|. |+|||++++.. ...+.|+||.+|+|+++|+++...+
T Consensus 456 v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i~GR~dd~Ik~~G~rI~~~e 531 (652)
T 1pg4_A 456 QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITGRVDDVLNVSGHRLGTAE 531 (652)
T ss_dssp CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEEESSSEEEETTEEEEHHH
T ss_pred cCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCcEEEEecCCCEEEECCEEECHHH
Confidence 56799999999862 33332 99999999973 4689999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCEEEeEEEee-cCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHHHHHhhChHHHHhhccC
Q 007149 465 LLKAVTEAKLLIEPLGFLLTEYTAYA-DTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSRVEESLDSVYRRCRKKD 543 (616)
Q Consensus 465 v~~av~~a~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~ 543 (616)
||.+|.+. .+ |.+-.+.. +.......-+.|+.++. +. ..+.+..+++.+.+.+.| +.|
T Consensus 532 IE~~l~~~------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~-~~----~~~~~~~~~l~~~l~~~l-~~~------- 590 (652)
T 1pg4_A 532 IESALVAH------PK--IAEAAVVGIPHAIKGQAIYAYVTLNH-GE----EPSPELYAEVRNWVRKEI-GPL------- 590 (652)
T ss_dssp HHHHHHHS------TT--EEEEEEEEEEETTTEEEEEEEEEECT-TC----CCCHHHHHHHHHHHHHHT-CGG-------
T ss_pred HHHHHHhC------CC--cceEEEEEEEcCCCCeEEEEEEEECC-CC----CCCHHHHHHHHHHHHHhC-CCC-------
Confidence 99999752 22 44554432 11111123446666642 21 233333444444444444 111
Q ss_pred CccCCeEEEEcC------CCcHH--HHHHHHHhcCCCCCCccCCcccCCHHHHHHHhcccc
Q 007149 544 NSIGPLEIRVVK------DGTFD--ALMDFSVSQGSSVNQYKTPRCIKSEEAINLLDSKVV 596 (616)
Q Consensus 544 g~l~p~~v~~v~------~GtF~--~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~~~ 596 (616)
.-|-.|.+|. .|-.. ++++.. .+. ..+++.+--+.|++.++.+.+.+.
T Consensus 591 --~~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~~p~~~~~~~~~~~ 646 (652)
T 1pg4_A 591 --ATPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLADPGVVEKLLEEKQ 646 (652)
T ss_dssp --GCCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------CCTTHHHHHHHHHH
T ss_pred --cCCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccCCHHHHHHHHHHhh
Confidence 1244455543 23322 222221 222 135566677788999988876443
No 21
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.22 E-value=1.3e-10 Score=129.38 Aligned_cols=132 Identities=14% Similarity=0.145 Sum_probs=62.6
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCCCCCce-eecCCceEEEEEeCCCCCCcccch
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKPSDVSY-TLLPNMAYFEFLPVEKSNGELTQE 382 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~~~~~~-~l~~~~~~~EFip~~~~~~~~~~~ 382 (616)
+..+++|+. ....+.+++.+|...++ +.||.||+...+...+......... ..+|+ .-.+.+++++
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~-~~~~i~d~~~-------- 378 (550)
T 3rix_A 309 LHEIASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKVVPF-FEAKVVDLDT-------- 378 (550)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEECTT-CEEEEECTTT--------
T ss_pred ccEEEEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccccCC-cEEEEEeCCC--------
Confidence 555666664 44566777777433466 9999999854332222211111111 12222 2344444322
Q ss_pred hhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEE
Q 007149 383 FQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWF 445 (616)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f 445 (616)
.+ .|..|+.+||+|+. ..|+|. |||||++++.. ...+.|
T Consensus 379 ---------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~ 434 (550)
T 3rix_A 379 ---------------GK-----TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFI 434 (550)
T ss_dssp ---------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEE
T ss_pred ---------------Cc-----CCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEE
Confidence 12 25789999999984 355543 99999999973 568999
Q ss_pred EeecCceeeccceecCHHHHHHHHHHH
Q 007149 446 VHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 446 ~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+||.+++++++|+++++.+||.+|.+.
T Consensus 435 ~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 435 VDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp C--------------------------
T ss_pred EecchheeEECCEEECHHHHHHHHHhC
Confidence 999999999999999999999999763
No 22
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.22 E-value=1e-10 Score=130.59 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=54.0
Q ss_pred cccCCCceeEEEEcc---cccee----------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccce
Q 007149 404 TNVKLGHCYELVVTT---FTGLY----------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTD 458 (616)
Q Consensus 404 ~ev~~G~~yelVvTt---~~Gly----------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~ge 458 (616)
.+|..|+.+||+|+. ..|+| .|||||++++. ...+.|+||.+|+|+++|+
T Consensus 392 ~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-----dG~l~~~GR~dd~Ik~~G~ 466 (590)
T 3kxw_A 392 IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-----ENELYVTGRIKDLIIIYGK 466 (590)
T ss_dssp CBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-----TTEEEEEEESSCHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-----CCEEEEEcCccceEEECCE
Confidence 346789999999975 34543 59999999887 2479999999999999999
Q ss_pred ecCHHHHHHHHHHH
Q 007149 459 KTNEEDLLKAVTEA 472 (616)
Q Consensus 459 k~~e~~v~~av~~a 472 (616)
++++.+||.+|...
T Consensus 467 ~v~p~eIE~~l~~~ 480 (590)
T 3kxw_A 467 NHYPQDIEFSLMHS 480 (590)
T ss_dssp TTHHHHHHHHHHHS
T ss_pred ecCHHHHHHHHHhc
Confidence 99999999999553
No 23
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.21 E-value=1.9e-10 Score=127.70 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=84.5
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCCC----CCCceeecCCceEEEEEeCCCCCCcc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCKP----SDVSYTLLPNMAYFEFLPVEKSNGEL 379 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~~----~~~~~~l~~~~~~~EFip~~~~~~~~ 379 (616)
+..+++|+. ....+++++.+ |++++ +.||.||+.+.+... ..+. ...+.. +++..-...++.+
T Consensus 300 lr~~~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p-~~~~~~~~i~d~~------ 369 (539)
T 1mdb_A 300 LQVLQVGGAKFSAEAARRVKAVF-GCTLQ-QVFGMAEGLVNYTRL-DDPEEIIVNTQGKP-MSPYDESRVWDDH------ 369 (539)
T ss_dssp CCEEEEESSCCCHHHHTTHHHHT-CSEEE-EEEECTTSCEEECCT-TSCHHHHHHCCCEE-SSTTCEEEEECTT------
T ss_pred eeEEEEcCCCCCHHHHHHHHHHh-CCcEE-EEEcCCCCcccccCC-CCcHHhcCCCCCcc-cCCCceEEEECCC------
Confidence 455556654 33445566667 78888 999999986654321 1100 011221 1211122333211
Q ss_pred cchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCe
Q 007149 380 TQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQ 442 (616)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~ 442 (616)
.+ +|..|+.+||+|+. ..|+|+ |||||++++.. ...
T Consensus 370 ------------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~ 422 (539)
T 1mdb_A 370 ------------------DR-----DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGY 422 (539)
T ss_dssp ------------------SC-----BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSC
T ss_pred ------------------CC-----CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCc
Confidence 12 35789999999975 355543 99999999973 468
Q ss_pred EEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 443 FWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 443 i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+.|+||.+++++++|+++++.+||.+|.+
T Consensus 423 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 423 IVVEGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp EEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHh
Confidence 99999999999999999999999999964
No 24
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.20 E-value=5.8e-10 Score=123.81 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=54.6
Q ss_pred ccCCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHH
Q 007149 405 NVKLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKA 468 (616)
Q Consensus 405 ev~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~a 468 (616)
.|..|+.+||+|+. ..|+|+ |||||++++. ...+.|+||.+|+++++|+++++.+||.+
T Consensus 405 ~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~-----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~ 479 (576)
T 3gqw_A 405 PVAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLL-----DGYLYVTGRIKDLIIIRGRNIWPQDIEYI 479 (576)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEE-----TTEEEEEEETTTCEEETTEEECHHHHHHH
T ss_pred CCCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEEE-----CCEEEEEecCcceEEECCEEECHHHHHHH
Confidence 35789999999975 467776 9999999874 35899999999999999999999999999
Q ss_pred HHHH
Q 007149 469 VTEA 472 (616)
Q Consensus 469 v~~a 472 (616)
|.+.
T Consensus 480 l~~~ 483 (576)
T 3gqw_A 480 AEQE 483 (576)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 9763
No 25
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.20 E-value=2e-10 Score=127.66 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=41.6
Q ss_pred cCCCceeEEEEcc---cccee------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHH
Q 007149 406 VKLGHCYELVVTT---FTGLY------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEED 464 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~ 464 (616)
|..|+.+||+|+. ..|+| .|||||++++.. ...+.|+||.+++++++|+++.+.+
T Consensus 378 ~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~e 453 (549)
T 3g7s_A 378 LGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE----EGFLHFQDRVKEVIKYKGYTIAPFE 453 (549)
T ss_dssp ECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT----TSCEEEEEEC------------CHH
T ss_pred CCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC----CceEEEeccccceEEECCEEECHHH
Confidence 4789999999974 34543 599999999973 5689999999999999999999999
Q ss_pred HHHHHHH
Q 007149 465 LLKAVTE 471 (616)
Q Consensus 465 v~~av~~ 471 (616)
||.+|.+
T Consensus 454 IE~~l~~ 460 (549)
T 3g7s_A 454 LEALLMK 460 (549)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999865
No 26
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.18 E-value=2.5e-10 Score=126.14 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=52.3
Q ss_pred CCCceeEEEEcc---ccceec-------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHH
Q 007149 407 KLGHCYELVVTT---FTGLYR-------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVT 470 (616)
Q Consensus 407 ~~G~~yelVvTt---~~GlyR-------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~ 470 (616)
+.| .+||+|+. ..|+|. |||||++++.. ...+.|+||.+++++++|+++.+.+||.+|.
T Consensus 359 ~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 433 (517)
T 3r44_A 359 EHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRLKDMIISGGENVYPAEIESVII 433 (517)
T ss_dssp SSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECGGGCEEETTEEECHHHHHHHHT
T ss_pred CCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCCcCEEEECCEEECHHHHHHHHH
Confidence 566 89999975 467765 99999999973 5689999999999999999999999999986
Q ss_pred H
Q 007149 471 E 471 (616)
Q Consensus 471 ~ 471 (616)
+
T Consensus 434 ~ 434 (517)
T 3r44_A 434 G 434 (517)
T ss_dssp T
T ss_pred h
Confidence 4
No 27
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.18 E-value=8.3e-10 Score=123.69 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=84.3
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCC--CCCCCCceeecCCceEEEEEeCCCCCCcccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPL--CKPSDVSYTLLPNMAYFEFLPVEKSNGELTQ 381 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~--~~~~~~~~~l~~~~~~~EFip~~~~~~~~~~ 381 (616)
+..+++|+. ...++.+++.+ |++++ +.||.||+.+.+...+. ..+...+. .+|+. -.+.++.+
T Consensus 324 lr~i~~gGe~l~~~~~~~~~~~~-g~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~v~i~d~~-------- 391 (570)
T 3c5e_A 324 LQNCVTVGESLLPETLENWRAQT-GLDIR-ESYGQTETGLTCMVSKTMKIKPGYMGT-AASCY-DVQIIDDK-------- 391 (570)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHH-SCCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-CEEEECTT--------
T ss_pred ceEEEEcCCcCCHHHHHHHHHHh-CCchh-hccchhhcccceecCcccccCCCcccc-cCCCc-eEEEECCC--------
Confidence 444455543 44556666667 78888 99999998543322111 11111122 12222 23333311
Q ss_pred hhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEc-----c---ccceec-------------cccCCEEEEecccCCC
Q 007149 382 EFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVT-----T---FTGLYR-------------YRVGDILMVTGFHNNA 440 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvT-----t---~~GlyR-------------Yr~GDvv~v~gf~~~~ 440 (616)
.+ .|..|+.+||+|+ . +.|+|. |+|||++++.. .
T Consensus 392 ----------------g~-----~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----d 446 (570)
T 3c5e_A 392 ----------------GN-----VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----D 446 (570)
T ss_dssp ----------------SC-----BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----T
T ss_pred ----------------CC-----CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----C
Confidence 12 3578999999997 2 345553 99999999873 4
Q ss_pred CeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 441 PQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 441 P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
..+.|+||.+++++++|+++++.+||.+|.+
T Consensus 447 G~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 447 GYFQFMGRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp SCEEEEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred ceEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 5899999999999999999999999999965
No 28
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.14 E-value=8.9e-10 Score=125.84 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=117.0
Q ss_pred CceEEEEEccch---hchHHHHHhhcC--CCCeeeccccccccce--eecCC-CCC--CCCCCceeecCCceEEEEEeCC
Q 007149 304 TKYIEVIVTGSM---AQYIPILEFYSG--GLPLVSTMYASSECYF--GINFK-PLC--KPSDVSYTLLPNMAYFEFLPVE 373 (616)
Q Consensus 304 l~~i~~~~~G~~---~~y~~~l~~~~~--~~~~~~~~y~asE~~~--~i~~~-~~~--~~~~~~~~l~~~~~~~EFip~~ 373 (616)
++.+..+++|+. ....+.+.+.+| +++++ +.||.||+.. ..+.. ... .+...+. .+|+. -.+.++.+
T Consensus 383 l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~-p~~g~-~v~i~d~~ 459 (663)
T 1ry2_A 383 LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASF-PFFGI-DAVVLDPN 459 (663)
T ss_dssp CTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCE-ECTTC-CEEEECSS
T ss_pred cCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCcccc-CcCCC-eEEEEcCC
Confidence 334666677765 334455666664 38898 9999999843 22211 000 1111222 12222 12333321
Q ss_pred CCCCcccchhhcCCCCCCCCCCCCcceeeccccCC-CceeEEEEccc-----ccee----------------ccccCCEE
Q 007149 374 KSNGELTQEFQCNGISDQDCQHDETEIVDLTNVKL-GHCYELVVTTF-----TGLY----------------RYRVGDIL 431 (616)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~-G~~yelVvTt~-----~Gly----------------RYr~GDvv 431 (616)
+ ++. |.. |+.+||+|+.. .|+| -|+|||++
T Consensus 460 ~-----------------------g~~-----v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg 511 (663)
T 1ry2_A 460 T-----------------------GEE-----LNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGA 511 (663)
T ss_dssp S-----------------------TTC-----EECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEE
T ss_pred C-----------------------CCc-----CCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEE
Confidence 1 122 344 88999999862 3443 29999999
Q ss_pred EEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCC-CCCceEEEEEEEeecCC
Q 007149 432 MVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTC-SIPGHYVVFWELKSKGS 510 (616)
Q Consensus 432 ~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~-~~~~~Y~l~~ele~~~~ 510 (616)
++.. ...+.|+||.+++|+++|+++...+||.+|.+. .+ |.+..++.-.. .....-+.|+.++. +.
T Consensus 512 ~~d~----dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~-~~ 578 (663)
T 1ry2_A 512 AKDK----DGYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------PI--VAECAVVGFNDDLTGQAVAAFVVLKN-KS 578 (663)
T ss_dssp EECT----TCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------TT--EEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred EEcC----CCCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------CC--cceEEEEEEecCCCCeEEEEEEEEcC-CC
Confidence 9983 468999999999999999999999999999642 22 45655543211 11123346666642 21
Q ss_pred CCCCC---C-CH---HHHHHHHHHHHHhhChHHHHhhccCCccCCeEEEEcCC------CcHHHHHHHHHhcCCCCCCcc
Q 007149 511 NNLSE---L-DT---DIMEQCCSRVEESLDSVYRRCRKKDNSIGPLEIRVVKD------GTFDALMDFSVSQGSSVNQYK 577 (616)
Q Consensus 511 ~~~~~---~-~~---~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~------GtF~~~~~~~~~~G~~~~Q~K 577 (616)
. . +. +..+++.+.+.+.| +. -..|-.|.+|.. |-..+-.=..+..+. ..+++
T Consensus 579 ----~~~~~~~~~~~~l~~~l~~~l~~~L-~~---------~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~-~~~~~ 643 (663)
T 1ry2_A 579 ----SWSTATDDELQDIKKHLVFTVRKDI-GP---------FAAPKLIILVDDLPKTRSGKIMRRILRKILAGE-SDQLG 643 (663)
T ss_dssp -------------CCSHHHHHHHHHHHHT-CT---------TTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--------
T ss_pred ----ccccccchhHHHHHHHHHHHHHHhC-CC---------CcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC-CCCCC
Confidence 1 1 11 12233333333333 11 122555666542 332221111111221 12677
Q ss_pred CCcccCCHHHHHHHhc
Q 007149 578 TPRCIKSEEAINLLDS 593 (616)
Q Consensus 578 ~Pr~~~~~~~~~~L~~ 593 (616)
.+--+.|++.++.+.+
T Consensus 644 ~~~~l~~p~~~~~~~~ 659 (663)
T 1ry2_A 644 DVSTLSNPGIVRHLID 659 (663)
T ss_dssp ------CCHHHHHHHH
T ss_pred CcccccCHHHHHHHHH
Confidence 7888889999998865
No 29
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.14 E-value=6.4e-10 Score=124.44 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=53.4
Q ss_pred cCCCceeEEEEcc---cccee--------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNE 462 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e 462 (616)
|..|+.+||+|+. ..|+| .|||||++++.. ...+.|+||.+++++++|+++++
T Consensus 367 ~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~d~Ik~~G~~V~p 442 (563)
T 1amu_A 367 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRIDNQVKIRGHRVEL 442 (563)
T ss_dssp CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGGGEEEETTEEEEH
T ss_pred CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEeccccCEEEECCEEeCH
Confidence 5689999999975 34554 599999999873 46899999999999999999999
Q ss_pred HHHHHHHHH
Q 007149 463 EDLLKAVTE 471 (616)
Q Consensus 463 ~~v~~av~~ 471 (616)
.+||.+|.+
T Consensus 443 ~eIE~~l~~ 451 (563)
T 1amu_A 443 EEVESILLK 451 (563)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999965
No 30
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.13 E-value=1.4e-09 Score=122.84 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=85.2
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC---CCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK---PSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++||. ....++++..+ +++++ +.||.||+.+......... ....+..+.++. -...++.+
T Consensus 304 lr~i~~gGe~l~~~~~~~~~~~~-~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~-~~~i~d~~------- 373 (617)
T 3rg2_A 304 LKLLQVGGARLSATLAARIPAEI-GCQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDD-EVWVADAE------- 373 (617)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHT-CSEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTTC-EEEEECTT-------
T ss_pred ccEEEEcCCcCCHHHHHHHHHHh-CCcEE-EEeccCcceeecccCCCcccccccCCCccCCCCc-eEEEECCC-------
Confidence 455556664 44455666666 78888 9999999865442111000 001122222221 22222211
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i 443 (616)
.+ .|..|+.+||+|+. ..|+|. |||||++++.. ...+
T Consensus 374 -----------------~~-----~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l 427 (617)
T 3rg2_A 374 -----------------GN-----PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYI 427 (617)
T ss_dssp -----------------SC-----BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCE
T ss_pred -----------------CC-----CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceE
Confidence 12 35789999999974 356653 99999999973 4689
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
+|+||.+++++++|+++.+.+||.+|.+
T Consensus 428 ~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 428 TVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred EEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 9999999999999999999999999965
No 31
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.13 E-value=9.5e-11 Score=131.04 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=62.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceee--c-CCCCCCCC---CCceeecCCceEEEEEeCCCCCC
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGI--N-FKPLCKPS---DVSYTLLPNMAYFEFLPVEKSNG 377 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i--~-~~~~~~~~---~~~~~l~~~~~~~EFip~~~~~~ 377 (616)
+..+++|+. .....++.+.+++++++ +.||.||+.... . ........ ..+. .+|+. -...++.+
T Consensus 328 lr~~~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~-~v~i~d~~---- 400 (570)
T 4gr5_A 328 VRYAITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGV-PLAGK-RAYVLDDD---- 400 (570)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBE-ECTTE-EEEEECTT----
T ss_pred ceEEEEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccce-eeCCC-EEEEECCC----
Confidence 445556664 24456666777789988 999999974321 1 10000000 0122 12222 22222211
Q ss_pred cccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec----------------------cccCCEEE
Q 007149 378 ELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR----------------------YRVGDILM 432 (616)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR----------------------Yr~GDvv~ 432 (616)
. .+|..|+.+||+|+. ..|+|+ |||||+++
T Consensus 401 --------------------~-----~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 401 --------------------L-----KPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLAR 455 (570)
T ss_dssp --------------------S-----CBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEE
T ss_pred --------------------C-----CCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEE
Confidence 1 235789999999974 355543 99999999
Q ss_pred EecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 433 VTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 433 v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+.. ...+.|+||.+|+|+++|+++++.+||.+|.+.
T Consensus 456 ~d~----dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 456 RRA----DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp ECT----TSCEEEEEC------------------------
T ss_pred ECC----CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 973 568999999999999999999999999999763
No 32
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.12 E-value=7.2e-10 Score=121.47 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCceeEEEEcc---ccceec------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 408 LGHCYELVVTT---FTGLYR------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 408 ~G~~yelVvTt---~~GlyR------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
.|+.+||+|+. ..|+|. |||||++++.. ...+.|+||.+|+++++|+++++.+||.++.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 57789999964 466665 99999999973 56899999999999999999999999998865
No 33
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.12 E-value=8.2e-11 Score=130.84 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=65.7
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeeccccccccceeecCCCCCC---CCCCceeecCCceEEEEEeCCCCCCccc
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFGINFKPLCK---PSDVSYTLLPNMAYFEFLPVEKSNGELT 380 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~i~~~~~~~---~~~~~~~l~~~~~~~EFip~~~~~~~~~ 380 (616)
+..+++|+. ....+.+++.+ +++++ +.||.||+.+.+....... ....+..+.++ .-++.++.+
T Consensus 309 lr~i~~gG~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~~i~d~~------- 378 (544)
T 3o83_A 309 LKLLQVGGASFPESLARQVPEVL-NCKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSD-DEIKIVDEQ------- 378 (544)
T ss_dssp CCEEEEESSCCCHHHHTHHHHHH-CSEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCTT-CEEEEECTT-------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHh-CCcEE-eeeccccccceeecCCCchhhccCCCceecCCC-cEEEEECCC-------
Confidence 444555553 44556666777 78888 9999999865432111000 00112222222 223333311
Q ss_pred chhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeE
Q 007149 381 QEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQF 443 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i 443 (616)
.+ +|..|+.+||+|+. ..|+|+ |||||++++.. ...+
T Consensus 379 -----------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l 432 (544)
T 3o83_A 379 -----------------YR-----EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNL 432 (544)
T ss_dssp -----------------SC-----BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCE
T ss_pred -----------------CC-----CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCE
Confidence 12 35789999999975 356553 99999999973 5689
Q ss_pred EEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 444 WFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 444 ~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
.|+||.+|+++++|+++++.+||.+|.+.
T Consensus 433 ~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 433 RVVGRIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp EEEEEEC----------------------
T ss_pred EEEeecCCEEEeCCEEECHHHHHHHHHhC
Confidence 99999999999999999999999999764
No 34
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.11 E-value=3.1e-10 Score=134.89 Aligned_cols=131 Identities=12% Similarity=0.159 Sum_probs=69.9
Q ss_pred EEEEEccch---hchHHHHHhhcCCCCeeecccccccccee--ecC--CCCC---CCCCCceeecCCceEEEEEeCCCCC
Q 007149 307 IEVIVTGSM---AQYIPILEFYSGGLPLVSTMYASSECYFG--INF--KPLC---KPSDVSYTLLPNMAYFEFLPVEKSN 376 (616)
Q Consensus 307 i~~~~~G~~---~~y~~~l~~~~~~~~~~~~~y~asE~~~~--i~~--~~~~---~~~~~~~~l~~~~~~~EFip~~~~~ 376 (616)
+..+++|+. ....+.+++.+++++++ +.||.||+... ... .... .+...+. .+|+. -++.++++.
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~-- 420 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRNA-EMKIVDPDT-- 420 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEECTTS--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCCc-EEEEEeCCC--
Confidence 556666764 55667788888899998 99999998532 211 0000 0011121 22322 234444321
Q ss_pred CcccchhhcCCCCCCCCCCCCcceeeccccCCCceeEEEEcc---ccceec--------------cccCCEEEEecccCC
Q 007149 377 GELTQEFQCNGISDQDCQHDETEIVDLTNVKLGHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNN 439 (616)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~ 439 (616)
.+ .|..|+.+||+|+. ..|+|+ |||||++++..
T Consensus 421 ---------------------~~-----~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~---- 470 (979)
T 3tsy_A 421 ---------------------GD-----SLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD---- 470 (979)
T ss_dssp ---------------------CC-----BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----
T ss_pred ---------------------CC-----CCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----
Confidence 12 25789999999974 356654 99999999973
Q ss_pred CCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 440 APQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 440 ~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
...+.|+||.+++++++|+++.+.+||.+|.+.
T Consensus 471 dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 471 DDELFIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp TSCEEEEEESCC---------------------
T ss_pred CceEEEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 468999999999999999999999999998763
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=98.99 E-value=2.7e-09 Score=121.06 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=53.0
Q ss_pred cCCCceeEEEEcc---cccee---------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecC
Q 007149 406 VKLGHCYELVVTT---FTGLY---------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTN 461 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly---------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~ 461 (616)
+..|+.+||+|.. ..|+| .|||||++++.. ...++|+||.+++++++|+++.
T Consensus 355 ~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l~~~GR~dd~Ik~~G~ri~ 430 (620)
T 4dg8_A 355 AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE----QGRLRFIGRGDGQVKLNGYRLD 430 (620)
T ss_dssp CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----TSCEEEEECSSSEEEETTEEEE
T ss_pred CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----CCeEEEEccCCCEEEECCEEcC
Confidence 4689999999963 34543 299999999973 5689999999999999999999
Q ss_pred HHHHHHHHHH
Q 007149 462 EEDLLKAVTE 471 (616)
Q Consensus 462 e~~v~~av~~ 471 (616)
+.+||.+|.+
T Consensus 431 ~~eIE~~l~~ 440 (620)
T 4dg8_A 431 LPALEQRFRR 440 (620)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.94 E-value=3.3e-09 Score=112.15 Aligned_cols=61 Identities=13% Similarity=0.221 Sum_probs=49.0
Q ss_pred cCCCceeEEEEccc--cceeccccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHHH
Q 007149 406 VKLGHCYELVVTTF--TGLYRYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTEA 472 (616)
Q Consensus 406 v~~G~~yelVvTt~--~GlyRYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~a 472 (616)
+..++.+|+++... .|- -|||||++++.. . .+.|+||.+|+++++|+++++.+||++|...
T Consensus 210 ~~~~~~Gel~~~g~~~~~g-~~~TGDlg~~d~---~--g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 272 (358)
T 4gs5_A 210 YGVDERGCLHISGAVTNGQ-TVQTNDLVEIHG---N--AFQWIGRADNVINSGGVKIVLDQIDQRIAAV 272 (358)
T ss_dssp EEECTTSEEEEESGGGTTC-CEEEEEEEEECS---S--EEEEEEEGGGEEEETTEEEEHHHHHHHHHHH
T ss_pred EEecCcCceEEecccccCc-ceecCCcccccc---C--ceEEcccccCeEEECCEEECHHHHHHHHHHh
Confidence 35577789998742 222 389999999984 2 3889999999999999999999999988654
No 37
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=98.93 E-value=2.6e-09 Score=118.59 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=48.7
Q ss_pred CceeEEEEcc---ccceec--------------cccCCEEEEecccCCCCeEEEEeecCceeeccceecCHHHHHHHHHH
Q 007149 409 GHCYELVVTT---FTGLYR--------------YRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNEEDLLKAVTE 471 (616)
Q Consensus 409 G~~yelVvTt---~~GlyR--------------Yr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e~~v~~av~~ 471 (616)
|+.+||+|+. ..|+|. |||||++++.. ...+.|+||.+++++++|+++++.+||.+|.+
T Consensus 381 ~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 456 (541)
T 1v25_A 381 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456 (541)
T ss_dssp CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCEEEEEESSCEEEETTEEEEHHHHHCC---
T ss_pred CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceEEEeecccceeeeCCEEECHHHHHHHHHh
Confidence 3689999975 456663 99999999973 46899999999999999999999999999976
Q ss_pred H
Q 007149 472 A 472 (616)
Q Consensus 472 a 472 (616)
.
T Consensus 457 ~ 457 (541)
T 1v25_A 457 H 457 (541)
T ss_dssp -
T ss_pred C
Confidence 3
No 38
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=98.81 E-value=7.7e-08 Score=117.81 Aligned_cols=62 Identities=21% Similarity=0.270 Sum_probs=53.4
Q ss_pred cCCCceeEEEEcc---cccee--------------------ccccCCEEEEecccCCCCeEEEEeecCceeeccceecCH
Q 007149 406 VKLGHCYELVVTT---FTGLY--------------------RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKTNE 462 (616)
Q Consensus 406 v~~G~~yelVvTt---~~Gly--------------------RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~~e 462 (616)
|..|+.+||+|.. ..|+| .|||||++++.. ...++|+||.+++++++|++|..
T Consensus 798 ~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~GR~d~qvki~G~rie~ 873 (1304)
T 2vsq_A 798 QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DGTIEYAGRIDDQVKIRGHRIEL 873 (1304)
T ss_dssp CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TSCEEEEEEGGGEEEETTEEEEH
T ss_pred CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CCeEEEEcCCCCEEEECCEeeCH
Confidence 5789999999974 24443 499999999973 56899999999999999999999
Q ss_pred HHHHHHHHH
Q 007149 463 EDLLKAVTE 471 (616)
Q Consensus 463 ~~v~~av~~ 471 (616)
.|||.+|.+
T Consensus 874 ~eIE~~l~~ 882 (1304)
T 2vsq_A 874 EEIEKQLQE 882 (1304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999976
No 39
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=97.95 E-value=3.6e-05 Score=83.12 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=16.1
Q ss_pred ccceeecccccCCCCCccccCChHHHH
Q 007149 99 PITEFLTSSGTSGGQPKMMPSTDEDLE 125 (616)
Q Consensus 99 pi~~f~~TSGTT~G~~K~IP~T~~~l~ 125 (616)
.+.+...||||| |+||-+..|...+.
T Consensus 184 d~a~i~~TSGTT-G~PKgV~~th~~l~ 209 (480)
T 3t5a_A 184 STAYLQYTSGST-RTPAGVVMSHQNVR 209 (480)
T ss_dssp SEEEEECC-------CCCEEEEHHHHH
T ss_pred ceEEEEecCCCC-CCCcEEEEeHHHHH
Confidence 345788899999 89999999998764
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=97.33 E-value=0.00034 Score=60.90 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=59.5
Q ss_pred ecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHHH
Q 007149 448 RKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCSR 527 (616)
Q Consensus 448 R~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~~ 527 (616)
|.+|||+++|.++++.+||.+|.+. .++. ..+.+..+.........+++++.. +. ..+...++.+++.
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~-~~----~~~~~~~~~l~~~ 69 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQ-LF----TDDYGRLQALTRE 69 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECT-TC----CCCHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEee-cc----ccccchhhhhHHH
Confidence 8899999999999999999998653 2221 123333332222234456777653 22 3455667777777
Q ss_pred HHHhhChHHHHhhccCCccCCeEEEEcCCCcHH
Q 007149 528 VEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFD 560 (616)
Q Consensus 528 ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~ 560 (616)
|.+.+ +... .+ ++.|.+|++|+++
T Consensus 70 i~~~l-------~~~~-gv-~~~v~~v~~~~lP 93 (109)
T 3lax_A 70 ITRQL-------KDEI-LV-TPRVKLVPKGALP 93 (109)
T ss_dssp HHHHH-------HHHH-SS-CCEEEEECTTCSC
T ss_pred HHHHH-------HHHh-CC-ccceEEEcCCeec
Confidence 77766 3233 35 5689999999987
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=96.96 E-value=0.0024 Score=55.66 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=57.8
Q ss_pred eecCceeeccceecCHHHHHHHHHHHHhhccccCCEEEeEEEeecCCCCCceEEEEEEEeecCCCCCCCCCHHHHHHHHH
Q 007149 447 HRKNVILSIDTDKTNEEDLLKAVTEAKLLIEPLGFLLTEYTAYADTCSIPGHYVVFWELKSKGSNNLSELDTDIMEQCCS 526 (616)
Q Consensus 447 gR~~~~l~~~gek~~e~~v~~av~~a~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~~ele~~~~~~~~~~~~~~l~~~~~ 526 (616)
||.+|||+++|.++++.+|+.+|.+. . ++. ..|.+..+.....-.-++++|+ . +.. ..+....+++.+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~-~~~---~~~~~~~~~l~~ 68 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-S-QLF---TDDYGRLQALTR 68 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-C-TTC---CCCHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-c-Ccc---ccchhHHHHHHH
Confidence 79999999999999999999999763 2 221 1344433222222245577887 3 320 111234455556
Q ss_pred HHHHhhChHHHHhhccCCccCCeEEEEcCCCcHH
Q 007149 527 RVEESLDSVYRRCRKKDNSIGPLEIRVVKDGTFD 560 (616)
Q Consensus 527 ~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~GtF~ 560 (616)
.|.+.+ +... .+ +++|.+|++|++.
T Consensus 69 ~i~~~l-------~~~~-~~-~~~v~~v~~~~lP 93 (109)
T 3gxs_A 69 EITRQL-------KDEI-LV-TPRVKLVPKGALP 93 (109)
T ss_dssp HHHHHH-------HHHH-SS-CCEEEEECTTCSC
T ss_pred HHHHHH-------HHhh-CC-ceEEEEECCCCcc
Confidence 666665 3233 35 4599999999976
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=31.23 E-value=1.2e+02 Score=24.37 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=36.8
Q ss_pred ecCHHHHHHHHHHHHhhcccc-CCEEEeEEEeecCCCCCceEEEEEEEee
Q 007149 459 KTNEEDLLKAVTEAKLLIEPL-GFLLTEYTAYADTCSIPGHYVVFWELKS 507 (616)
Q Consensus 459 k~~e~~v~~av~~a~~~~~~~-g~~l~~f~~~~~~~~~~~~Y~l~~ele~ 507 (616)
+-.++.++.||.+|.+.++.. ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 64 (72)
T 3onr_A 16 TSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVSF 64 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 455889999999999887533 4678888887764 35579998888876
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=30.21 E-value=1.3e+02 Score=23.84 Aligned_cols=48 Identities=6% Similarity=-0.069 Sum_probs=35.7
Q ss_pred ecCHHHHHHHHHHHHhhcccc-CCEEEeEEEeecCCCCCceEEEEEEEee
Q 007149 459 KTNEEDLLKAVTEAKLLIEPL-GFLLTEYTAYADTCSIPGHYVVFWELKS 507 (616)
Q Consensus 459 k~~e~~v~~av~~a~~~~~~~-g~~l~~f~~~~~~~~~~~~Y~l~~ele~ 507 (616)
+-.++.++.||.+|.+.++.. ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 14 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 62 (68)
T 2cc6_A 14 ESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQVAF 62 (68)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 445889999999999887432 4677788777654 34569998888876
No 44
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=21.96 E-value=1.3e+02 Score=23.93 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=35.0
Q ss_pred ecCHHHHHHHHHHHHhhcccc-CCEEEeEEEeecCCCCCceEEEEEEEee
Q 007149 459 KTNEEDLLKAVTEAKLLIEPL-GFLLTEYTAYADTCSIPGHYVVFWELKS 507 (616)
Q Consensus 459 k~~e~~v~~av~~a~~~~~~~-g~~l~~f~~~~~~~~~~~~Y~l~~ele~ 507 (616)
+-.++.++.||.+|.+.++.. ++++.+..+..+. +.-.||.+-+++.|
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkV~F 64 (69)
T 2ux9_A 16 EGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGE-AGVKEYQVVLEVGF 64 (69)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 445889999999999887432 4677777776653 34469998888766
No 45
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=21.94 E-value=90 Score=25.45 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=23.6
Q ss_pred ccccCCEEEEecccCCCCeEEEEeecCceeeccceec
Q 007149 424 RYRVGDILMVTGFHNNAPQFWFVHRKNVILSIDTDKT 460 (616)
Q Consensus 424 RYr~GDvv~v~gf~~~~P~i~f~gR~~~~l~~~gek~ 460 (616)
|+..||.|++.+ ...+.+.|. ...|.+..|+.+
T Consensus 29 ~f~~GD~iEi~~--P~g~~~~~~--v~~m~d~~G~~i 61 (89)
T 4he6_A 29 HFRPGDEVEFFG--PEIENFTQV--IEKIWDEDGNEL 61 (89)
T ss_dssp CBCTTCEEEEES--TTSCCEEEE--CCCEEETTSCEE
T ss_pred CcCCCCEEEEEc--CCCCcEEEE--eHHeEcCCCCEe
Confidence 589999999986 333344444 567888888766
No 46
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=21.45 E-value=1.3e+02 Score=24.07 Aligned_cols=48 Identities=17% Similarity=0.126 Sum_probs=35.2
Q ss_pred ecCHHHHHHHHHHHHhhcccc-CCEEEeEEEeecCCCCCceEEEEEEEee
Q 007149 459 KTNEEDLLKAVTEAKLLIEPL-GFLLTEYTAYADTCSIPGHYVVFWELKS 507 (616)
Q Consensus 459 k~~e~~v~~av~~a~~~~~~~-g~~l~~f~~~~~~~~~~~~Y~l~~ele~ 507 (616)
+-.++.++.||.+|.+.++.. +++|.+..+..+. +.-.||.+-+.+.|
T Consensus 17 ~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~d-gki~~yqV~lKV~F 65 (72)
T 2vxa_A 17 NGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEG-GRVNHWQVTVKVGF 65 (72)
T ss_dssp SCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 445889999999999887432 4677787776653 34469998888766
No 47
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=21.32 E-value=1.4e+02 Score=23.80 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.9
Q ss_pred ecCHHHHHHHHHHHHhhcccc-CCEEEeEEEeecCCCCCceEEEEEEEee
Q 007149 459 KTNEEDLLKAVTEAKLLIEPL-GFLLTEYTAYADTCSIPGHYVVFWELKS 507 (616)
Q Consensus 459 k~~e~~v~~av~~a~~~~~~~-g~~l~~f~~~~~~~~~~~~Y~l~~ele~ 507 (616)
+-.++.++.||.+|.+.++.. ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 16 ~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkv~F 64 (69)
T 2yiz_A 16 DGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVD-GAVAHFQVTMKVGF 64 (69)
T ss_dssp TCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 445889999999999887432 4677787776653 34469998888766
Done!