BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007151
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
Dehydratase- Shikimate Dehydrogenase In Complex With
Tartrate And Shikimate
Length = 523
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/501 (72%), Positives = 418/501 (83%), Gaps = 2/501 (0%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
KNP+LIC P+M +S+DKMV++ KA+ GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF SI GKKP K KVI
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
VSSHNYQ TPSVEDL LVARIQ +GADIVK ATTA+DI DVAR+F IT +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
MGERGL+SRILC+KFGG+LTFGTL++ VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
KPV HSKSPI++N+AFKSV FNGV+VHLLVD++ F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR G + SS
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLENFN 438
LA K VVI +VVIANRTY+RA ELAE +GG ALSL DL+N++
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 439 PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVS 498
PEDGM+LANTTS+GMQP V+ETPI K AL HYALVFDAVYTP+ITRLLREAEESGA VS
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVS 481
Query: 499 GLEMFIGQAYEQYERFTGLPG 519
G EMF+ QAYEQ+E FTGLP
Sbjct: 482 GSEMFVRQAYEQFEIFTGLPA 502
>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
Length = 523
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/501 (72%), Positives = 417/501 (83%), Gaps = 2/501 (0%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
KNP+LIC P+M +S+DKMV++ KA+ GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF SI GKKP K KVI
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
VSSHNYQ TPSVEDL LVARIQ +GADIVK ATTA+DI DVAR+F IT +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
MGERGL+SRILC+KFGG+LTFGTL++ VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
KPV HSKSPI++N+AFKSV FNGV+VHLLVD++ F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
CDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR G + SS
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALSLADLENFN 438
LA K VVI +VVIANRTY+RA ELAE +GG ALSL DL+N++
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 439 PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVS 498
PEDGM+LANTTS+GMQP V+ETPI K AL HYALVFDAVYTP+ITRLLREAEESGA VS
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVS 481
Query: 499 GLEMFIGQAYEQYERFTGLPG 519
G EMF+ QAYEQ+E FTGLP
Sbjct: 482 GSEMFVRQAYEQFEIFTGLPA 502
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 144/279 (51%), Gaps = 21/279 (7%)
Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVD--DIAKFFQTYSS 302
N G KV+G+IG PV HS SP+++N+AF +G + V+ + +
Sbjct: 15 NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
AG + TIPHK A + DEVD A+ IGAVN II +DG+L GYNTD +G + A+E
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTII--NNDGRLVGYNTDGLGYVQALE 132
Query: 363 DGLRGRLNVSGGVSSALAGK-LFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRA---- 417
+ +N++ L GK + V+ R+ +ANRT ++A
Sbjct: 133 E----EMNIT------LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182
Query: 418 RELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAV 477
RE E + SLA+ E E +I+ NTTS+GM P+V+ P+ L +V D +
Sbjct: 183 REGDERRSAY-FSLAEAETRLAEYDIII-NTTSVGMHPRVEVQPLSLERLRPGVIVSDII 240
Query: 478 YTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
Y P T+ L+EA+ GA + +G+ M + Q +E++TG
Sbjct: 241 YNPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTG 279
>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
pdb|1NVT|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or
Mj1084) In Complex With Nadp+
Length = 287
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/276 (35%), Positives = 140/276 (50%), Gaps = 27/276 (9%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFV--HLLVDDIAKFFQTYSSNDFAGFSC 310
TKV G+IG PV HS SPI++N AFK G N V+V +L +++ + GF+
Sbjct: 11 TKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNV 70
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
TIPHK +K DE+D A+ IGAVN I + DGK GYNTD +GA A+E+ + GR+
Sbjct: 71 TIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEI-GRVK 127
Query: 371 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVG----- 425
+VI ++IANRT ++A LA+ +
Sbjct: 128 DKN-----------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEKLNK 176
Query: 426 --GHALSLADLENFNPEDGM-ILANTTSIGMQPKVDETPIPK-HALGHYALVFDAVYTPK 481
G + + L+ DG+ I+ N T IGM P +D PI K L +V D +Y P
Sbjct: 177 KFGEEVKFSGLD--VDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPL 234
Query: 482 ITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 517
T LL+EA++ A ++GL M I Q ++ +TG+
Sbjct: 235 ETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGV 270
>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis
pdb|3DOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Staphylococcus Epidermidis Complexed With Shikimate
Length = 277
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 138/278 (49%), Gaps = 34/278 (12%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF--VHLLVDDIAKFFQTYSSNDFAGFSCTIP 313
F +IG P+ HS SP++++ F+S+ + +++ V+ + S GF+ TIP
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTD---YVGAISAIEDGLRGRLN 370
HKE + D+++ AKS+GAVN ++ + DGK GYNTD YV + I +G+
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIEDAYI 120
Query: 371 V---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
+ +GG S +A +L+ ++ + +ANRT R + +
Sbjct: 121 LILGAGGASKGIANELYKIVRPT----------------LTVANRTMSRFNNWSLNINKI 164
Query: 428 ALSLAD--LENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRL 485
LS A+ L+ F+ I+ NTT GM D I + L + LV D VY P T +
Sbjct: 165 NLSHAESHLDEFD-----IIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYKTPI 218
Query: 486 LREAEESGATIVSGLEMFIGQAYEQYERFTGLPGKMNA 523
L EAE+ G I +GL+MF+ Q E ++ +T L + A
Sbjct: 219 LIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKA 256
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 41/280 (14%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
+ T+++G+IG PV HS SP+ N + G N V++ + +++ K F+ + +
Sbjct: 2 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
G + T+P KE + D V+ AK IGAVN + + +GK +GYNTD++G + +++
Sbjct: 62 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK---- 115
Query: 367 GRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG 426
+ + K +V+ +V + NRT ++A +LA+
Sbjct: 116 -------SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 168
Query: 427 HALSLADLENFNPEDGM----ILANTTSIGMQPKVDETPIPKHALGHYAL------VFDA 476
++ +PE+ + ++ NTTS+G++ DE P + +Y L V D
Sbjct: 169 EVVN-------SPEEVIDKVQVIVNTTSVGLK---DEDP----EIFNYDLIKKDHVVVDI 214
Query: 477 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
+Y K T+LL++A+E GA ++ GL M + Q E ++ + G
Sbjct: 215 IY--KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNG 252
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 139/280 (49%), Gaps = 41/280 (14%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
+ T+++G+IG PV HS SP+ N + G N V++ + +++ K F+ + +
Sbjct: 8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
G + T+P KE + D V+ AK IGAVN + + +GK +GYNTD++G + +++
Sbjct: 68 GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLK---- 121
Query: 367 GRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGG 426
+ + K +V+ +V + NRT ++A +LA+
Sbjct: 122 -------SLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPL 174
Query: 427 HALSLADLENFNPEDGM----ILANTTSIGMQPKVDETPIPKHALGHYAL------VFDA 476
++ +PE+ + ++ NTTS+G++ DE P + +Y L V D
Sbjct: 175 EVVN-------SPEEVIDKVQVIVNTTSVGLK---DEDP----EIFNYDLIKKDHVVVDI 220
Query: 477 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
+Y K T+LL++A+E GA ++ GL M + Q E ++ + G
Sbjct: 221 IY--KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNG 258
>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|1WXD|B Chain B, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From
Thermus Thermophilus Hb8
pdb|2CY0|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2CY0|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp
pdb|2D5C|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2D5C|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Shikimate
pdb|2EV9|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
pdb|2EV9|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Thermus Thermophilus Hb8 In Complex With Nadp(H) And
Shikimate
Length = 263
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 121/268 (45%), Gaps = 31/268 (11%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
F ++G PV HS SP ++ A +S+G G + + L + + + F G +
Sbjct: 4 FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-----FRGVN 58
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
T+P KEAA+ D V A+ IGAVN ++ Q +G+LFG+NTD G + A++
Sbjct: 59 LTLPLKEAALAHLDWVSPEAQRIGAVNTVL--QVEGRLFGFNTDAPGFLEALK------- 109
Query: 370 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHAL 429
+GG+ L G +V+ V + NRT RA LAE G A+
Sbjct: 110 --AGGIP--LKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164
Query: 430 SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREA 489
L + +L N T +G++ +P+P D VY P TR LREA
Sbjct: 165 PLE-----KAREARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTRFLREA 218
Query: 490 EESGATIVSGLEMFIGQAYEQYERFTGL 517
+ G + +GL M Q + +TGL
Sbjct: 219 KAKGLKVQTGLPMLAWQGALAFRLWTGL 246
>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|3JS3|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Clostridium Difficile With Covalent Reaction
Intermediate
pdb|4H3D|A Chain A, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|B Chain B, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|C Chain C, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid.
pdb|4H3D|D Chain D, 1.95 Angstrom Crystal Structure Of Of Type I
3-Dehydroquinate Dehydratase (Arod) From Clostridium
Difficile With Covalent Modified Comenic Acid
Length = 258
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 14/233 (6%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPVPT 80
ICVPI+G++ ++ + + + D++E R+D +N + +K ++ E +P
Sbjct: 22 ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRG-KKPEKCK 138
LFT+R + EGG+ + + + G D IDVEL + E D + ++ K
Sbjct: 82 LFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK 141
Query: 139 VIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQ 193
VI+S+H++ TP E++ + + R+Q GAD+ K A + DV + + T +++
Sbjct: 142 VIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYAD 201
Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
PII + M G+ISR+ FG LTFG ++ VSAPGQ + K+L + N
Sbjct: 202 RPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252
>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|B Chain B, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|C Chain C, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|D Chain D, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|E Chain E, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|F Chain F, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|G Chain G, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TOZ|H Chain H, 2.2 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Nad.
pdb|3TNL|A Chain A, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|B Chain B, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|C Chain C, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad.
pdb|3TNL|D Chain D, 1.45 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase From Listeria Monocytogenes In Complex
With Shikimate And Nad
Length = 315
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 38/283 (13%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSC 310
T++ G+I P+ HS SP ++NEAF +G + V++ V D + Q + + + G++
Sbjct: 37 TELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNV 96
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------G 364
++P+K K D++ A+ +GAVN ++ DG L G+ TD G + A+++ G
Sbjct: 97 SMPNKTNIHKYLDKLSPAAELVGAVNTVV--NDDGVLTGHITDGTGYMRALKEAGHDIIG 154
Query: 365 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELA 421
+ + +GG ++A+ + I NR Y A +
Sbjct: 155 KKMTICGAGGAATAIC----------------IQAALDGVKEISIFNRKDDFYANAEKTV 198
Query: 422 ETVG------GHALSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPK-HALGHYAL 472
E + + D E E + +I N T +GM+P ET +P L +
Sbjct: 199 EKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELI 258
Query: 473 VFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFT 515
V D VY P TRLL AEE G ++GL M + Q + +E +T
Sbjct: 259 VSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWT 301
>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
Length = 312
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 30/279 (10%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
++ G++ P+ HS SP + N+A + G ++ VD+ A + + G +
Sbjct: 32 ELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVS 91
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAI-EDGLRGRLN 370
+P+K+ A + DE+ AK +GA+N I+ DG L GYNTD G I AI E G R
Sbjct: 92 MPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDMR-- 147
Query: 371 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXR-VVIANRT---YDRARELAETVGG 426
GK V++ + + + NR +++A A+ V
Sbjct: 148 ----------GKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNE 197
Query: 427 HA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGH-YALVFDAV 477
+ LAD F IL N T +GM+P +E+ I +L LV + V
Sbjct: 198 NTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECV 257
Query: 478 YTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
Y P +T+LL++A+++G + G M + Q EQ+E +TG
Sbjct: 258 YNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTG 296
>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|B Chain B, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|C Chain C, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
pdb|3FBT|D Chain D, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5-
Dehydrogenase Fusion Protein From Clostridium
Acetobutylicum
Length = 282
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 121/267 (45%), Gaps = 31/267 (11%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
M +T ++G+IG+ +GHS S ++ F+ VG G++ V + + + T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG---AISAIED 363
G + TIP+K +K E+ A+ IGAVN + + S + G+NTDY+G +S
Sbjct: 61 GLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDYIGFGKMLSKFRV 118
Query: 364 GLRGRLNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRAREL 420
++ + V SGG + A+ L + + R ++ E+
Sbjct: 119 EIKNNICVVLGSGGAARAVLQYL----------------KDNFAKDIYVVTRNPEKTSEI 162
Query: 421 AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTP 480
+S +L N G ++ N T GM PK E+P+ K + ++ D +Y P
Sbjct: 163 YGEF--KVISYDELSNLK---GDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP 217
Query: 481 KITRLLREAEESGATIVSGLEMFIGQA 507
T L+ A ESG V+GL M + QA
Sbjct: 218 VETLFLKYARESGVKAVNGLYMLVSQA 244
>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3L2I|B Chain B, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2.
pdb|3LB0|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3LB0|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 With Citrate
Bound To The Active Site.
pdb|3S42|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
pdb|3S42|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Enterica Typhimurium Lt2 With
Malonate And Boric Acid At The Active Site
Length = 276
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 194 --VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266
>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|E Chain E, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3M7W|F Chain F, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium Lt2 In Covalent
Complex With Dehydroquinate
pdb|3OEX|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|B Chain B, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|C Chain C, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|3OEX|D Chain D, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase
(Arod) From Salmonella Typhimurium With Close Loop
Conformation.
pdb|4GFS|A Chain A, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GFS|B Chain B, 1.8 Angstrom Crystal Structure Of The 3-Dehydroquinate
Dehydratase (Arod) From Salmonella Typhimurium Lt2 With
Nickel Bound At Active Site
pdb|4GUI|A Chain A, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUI|B Chain B, 1.78 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Quinate
pdb|4GUJ|A Chain A, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
pdb|4GUJ|B Chain B, 1.50 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (Arod) In Complex With
Shikimate
Length = 255
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 18/229 (7%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 21 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 81 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 194 --VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 245
>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUF|B Chain B, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant
pdb|4GUG|A Chain A, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUG|B Chain B, 1.62 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #1)
pdb|4GUH|A Chain A, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
pdb|4GUH|B Chain B, 1.95 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) E86a Mutant In
Complex With Dehydroshikimate (crystal Form #2)
Length = 276
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R GG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 194 --VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266
>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|3NNT|B Chain B, Crystal Structure Of K170m Mutant Of Type I
3-Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium Lt2 In Non-Covalent Complex With
Dehydroquinate.
pdb|4IUO|A Chain A, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
pdb|4IUO|B Chain B, 1.8 Angstrom Crystal Structure Of The Salmonella Enterica
3- Dehydroquinate Dehydratase (arod) K170m Mutant In
Complex With Quinate
Length = 276
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
VI+S+H++ TP+ E++ + ++Q GADI A DV + TV Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 194 --VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
PII + M + G+ISR+ FG TFG ++ SAPGQ ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGQISVADL 266
>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
pdb|3O1N|B Chain B, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I
Dehydroquinate Dehydratase (Arod) From Salmonella
Typhimurium
Length = 276
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 18/229 (7%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPREN-------IKTLIKESPV 78
I V +MG+++ + + + D++E R+D N E+ I+ +I + P+
Sbjct: 42 IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAR-EFNDSIRGKKPEK 136
LFT+R EGG+ + +D+ R A++ G D ID+EL E ++
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV Q
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 194 --VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
PII + M + G+ISR+ FG TFG ++ SAPG ++ DL
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADL 266
>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1QFE|B Chain B, The Structure Of Type I 3-Dehydroquinate Dehydratase From
Salmonella Typhi
pdb|1L9W|A Chain A, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|B Chain B, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|C Chain C, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1L9W|D Chain D, Crystal Structure Of 3-Dehydroquinase From Salmonella
Typhi Complexed With Reaction Product
pdb|1GQN|A Chain A, Native 3-Dehydroquinase From Salmonella Typhi
Length = 252
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 18/239 (7%)
Query: 14 LVSGGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT-- 71
++ GM K I V +MG ++ + + + D++E R+D + +++ T
Sbjct: 10 IIGEGMPK----IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAA 65
Query: 72 -LIKES--PVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVA-REFN 126
+I+++ +P LFT+R EGG+ + + R A++ G D ID+EL +
Sbjct: 66 RVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVK 125
Query: 127 DSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF 186
++ V++S+H++ TPS E++ + + ++QA GADI K A DV +
Sbjct: 126 ATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLL 185
Query: 187 QITVHSQV-----PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
T+ Q P+I + M + G+ISR+ FG TFG ++ SAPGQ + DL
Sbjct: 186 TATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQA--SAPGQIAVNDL 242
>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From
Thermotoga Maritima
Length = 253
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 121/262 (46%), Gaps = 39/262 (14%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVF------VHLLVDDIAKFFQTYSSNDFAGFS 309
F IIG PV HS SP LYNE FK G N + +I + + Y GF+
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRL 369
TIPHKE ++ + + A+ I AVNC+ R GK GYNTD+VG + ++E
Sbjct: 58 ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSLEGVEVKEP 110
Query: 370 NVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHAL 429
V G A ++ ++ + + NRT +RA+ L V
Sbjct: 111 VVVVGAGGAARAVIYALLQMGVKD-------------IWVVNRTIERAKALDFPV--KIF 155
Query: 430 SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREA 489
SL L+ + L NTTS+GM K +E P+ +L + +LV+D +Y T L+ +A
Sbjct: 156 SLDQLDEV-VKKAKSLFNTTSVGM--KGEELPVSDDSLKNLSLVYDVIYFD--TPLVVKA 210
Query: 490 EESGAT-IVSGLEMFIGQAYEQ 510
+ G I+ G MF QA E
Sbjct: 211 RKLGVKHIIKGNLMFYYQAMEN 232
>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1NPD|B Chain B, X-Ray Structure Of Shikimate Dehydrogenase Complexed With
Nad+ From E.Coli (Ydib) Northeast Structural Genomics
Research Consortium (Nesg) Target Er24
pdb|1O9B|A Chain A, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
pdb|1O9B|B Chain B, QuinateSHIKIMATE DEHYDROGENASE YDIB COMPLEXED WITH NADH
Length = 288
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 38/283 (13%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
++ G+ P+ HS SP N+A + G + VD+ + + G +
Sbjct: 8 ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 67
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
P+K+ A + DE+ AK +GA+N I+ DG L GYNTD G I AI++ ++G+
Sbjct: 68 XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 125
Query: 369 LNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELAE 422
V +GG S+A+ + + + + NR +D+A A+
Sbjct: 126 TXVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQ 169
Query: 423 TVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-V 473
V + LAD + F IL N T +G +P +E+ + +L H L V
Sbjct: 170 RVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLV 229
Query: 474 FDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
+ VY P T+LL++A+++G + G + Q EQ+ +TG
Sbjct: 230 TECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTG 272
>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
pdb|1VI2|B Chain B, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad
Length = 300
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 128/283 (45%), Gaps = 38/283 (13%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDD--IAKFFQTYSSNDFAGFSCT 311
++ G+ P+ HS SP N+A + G + VD+ + + G +
Sbjct: 10 ELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXRGTGVS 69
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG---LRGR 368
P+K+ A + DE+ AK +GA+N I+ DG L GYNTD G I AI++ ++G+
Sbjct: 70 XPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAIKESGFDIKGK 127
Query: 369 LNV---SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRT---YDRARELAE 422
V +GG S+A+ + + + + NR +D+A A+
Sbjct: 128 TXVLLGAGGASTAIGAQGAI----------------EGLKEIKLFNRRDEFFDKALAFAQ 171
Query: 423 TVGGHA------LSLADLENFNPE--DGMILANTTSIGMQPKVDETPIPKHALGHYAL-V 473
V + LAD + F IL N T +G +P +E+ + +L H L V
Sbjct: 172 RVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGLLV 231
Query: 474 FDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
+ VY P T+LL++A+++G + G + Q EQ+ +TG
Sbjct: 232 TECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTG 274
>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|B Chain B, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|C Chain C, Shikimate Dehydrogenase Aroe Complexed With Nadp+
pdb|1NYT|D Chain D, Shikimate Dehydrogenase Aroe Complexed With Nadp+
Length = 271
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 119/277 (42%), Gaps = 36/277 (12%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCT 311
+ + + G P+ HSKSP ++ + + + + +L ++D + S G + T
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE------DGL 365
+P KE A DE+ A GAVN ++R + DG+L G NTD VG +S +E GL
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERLSFIRPGL 120
Query: 366 RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE--- 422
R L +GG S + L + V I NRT RA ELA+
Sbjct: 121 RILLIGAGGASRGVLLPLLSL-----------------DCAVTITNRTVSRAEELAKLFA 163
Query: 423 -TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPK 481
T ALS+ +LE + ++ N TS G+ + P G Y +D Y
Sbjct: 164 HTGSIQALSMDELEGHEFD---LIINATSSGISGDIPAIPSSLIHPGIY--CYDMFYQKG 218
Query: 482 ITRLLREAEESGATI-VSGLEMFIGQAYEQYERFTGL 517
T L E+ G+ GL M + QA + + G+
Sbjct: 219 KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGV 255
>pdb|2OX1|A Chain A, Archaeal Dehydroquinase
pdb|2OX1|B Chain B, Archaeal Dehydroquinase
pdb|2OX1|C Chain C, Archaeal Dehydroquinase
pdb|2OX1|D Chain D, Archaeal Dehydroquinase
Length = 196
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 47 ASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRL 106
A AD+VE+R+D R + + ++ T R + +GG+++GDE ER++ ++
Sbjct: 16 AEKADVVELRIDLFDFSGARVDKEKIL---------TCRRVSDGGKFEGDERERIEKMKR 66
Query: 107 AME-LGADYIDVELQV---AREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARI 162
A + L DY+D+E + A +FN C++I S HN+ TP D S L +
Sbjct: 67 AFDSLNPDYVDLESDLPDSAFDFN----------CRIIESYHNFIRTP---DYSELKGIV 113
Query: 163 QASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFG 222
+ D+VK AT DV + +I + ++ +MGER +R+L A G +
Sbjct: 114 EGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYC 172
Query: 223 TLENGIVSAPGQPTIKD 239
+ G APGQ ++ D
Sbjct: 173 YV--GSPKAPGQISLDD 187
>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas
Putida
Length = 272
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 112/274 (40%), Gaps = 34/274 (12%)
Query: 256 FGIIGKPVGHSKSPILY-------NEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
+ +IG+P+ H+KSP+++ N+ + G +DD + S G
Sbjct: 5 YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGS-----LDDFEAQVLQFRSEGGKGM 59
Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL--- 365
+ T P K A + D A+ A N + + DG++ N D +G + IE+ L
Sbjct: 60 NITAPFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGEP 117
Query: 366 -RGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETV 424
R R + G A+ G L + +VIANR +A L +
Sbjct: 118 LRNRRVLLLGAGGAVRGALLPFLQAGPS-------------ELVIANRDMAKALALRNEL 164
Query: 425 GGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITR 484
L ++ E + I+ N TS + D P+P LG AL ++ Y +T
Sbjct: 165 DHSRLRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTP 222
Query: 485 LLREAEESG-ATIVSGLEMFIGQAYEQYERFTGL 517
LR A E G A + G+ M + QA E + + G+
Sbjct: 223 FLRLAREQGQARLADGVGMLVEQAAEAFAWWRGV 256
>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
pdb|2YR1|B Chain B, Crystal Structure Of 3-Dehydroquinate Dehydratase From
Geobacillus Kaustophilus Hta426
Length = 257
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 107/238 (44%), Gaps = 21/238 (8%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENI-------KTLIKESPV 78
IC P++GE K++ + + DL+E R D + + +E + + + E +
Sbjct: 22 ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGE--I 79
Query: 79 PTLFTYRPIWEGGQ-YDGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
P LFT R EGGQ +E E ++ GA D +D EL D R E+
Sbjct: 80 PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRR--MTEE 137
Query: 137 CKV--IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ- 193
C V +VS H + TP E L + + + GADI K A DV + Q T ++
Sbjct: 138 CSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARR 197
Query: 194 ---VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQ 248
+P+I + MG G I+R+ FG +TF SAPGQ I D+ + + Q
Sbjct: 198 ELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQS--SAPGQIPIDDVRTVLSILQ 253
>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHG|B Chain B, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe)
From Helicobacter Pylori
pdb|3PHH|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate
pdb|3PHI|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHI|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With Shikimate And Nadph
pdb|3PHJ|A Chain A, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
pdb|3PHJ|B Chain B, Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori
In Complex With 3-Dehydroshikimate
Length = 269
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 39/273 (14%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 483
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 484 RLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
L A+E G +M I QA +E+F+
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYQAALSFEKFSA 247
>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
pdb|4FSH|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (aroe)
Clinical Variant V2356 From Helicobacter Pylori In
Complex With Shikimate
Length = 271
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 49/278 (17%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDF---- 305
K FG+ G P+ HSKSP+++N F K +GF G + +L+ +++ N+F
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLP-----LESHIKNEFLHLG 58
Query: 306 -AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIED 363
+G + T+P KE A + CD++ +A ++N ++ + L GYNTD +G +S
Sbjct: 59 LSGANVTLPFKERAFQVCDKIKGIALECASINTLVLENDE--LVGYNTDALGFYLSLKHQ 116
Query: 364 GLRGRLNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE 422
+ L + SGG + ALA L +V + NR+ R + +
Sbjct: 117 NYQNALILGSGGSAKALACGL-----------------KKQGLKVSVLNRS-PRGLDFFQ 158
Query: 423 TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVY 478
+G F+ ++ N TS + +E P+ K L Y L +D Y
Sbjct: 159 RLGCDCFMEPPKSAFD-----LIINATSASLN---NELPLNKEVLKGYFKEAKLAYDLAY 210
Query: 479 TPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
+T L A+E G +M I QA +E+F+
Sbjct: 211 G-FLTPFLALAKELKIPFQDGKDMLIYQASLSFEKFSA 247
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 113/267 (42%), Gaps = 31/267 (11%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIA--KFFQTYSS-NDFAGFS 309
T++ I+G P+ KSP +N F N + + + + A F T + G
Sbjct: 6 TELVAIVGSPIAQVKSPQNFNTWFNHNNCNLAMLPIDLHEAALDSFADTLRGWQNLRGCV 65
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIED------ 363
T+P+K+A D + A ++G++N +IRR+ DG+L G N D G + A
Sbjct: 66 VTVPYKQALANRVDGLSERAAALGSIN-VIRRERDGRLLGDNVDGAGFLGAAHKHGFEPA 124
Query: 364 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 423
G R + GGV SA+A L + + + + R + E
Sbjct: 125 GKRALVIGCGGVGSAIAYAL----------------AEAGIASITLCDPSTARMGAVCEL 168
Query: 424 VGGHALSLADLENFNP-EDGMILANTTSIGMQPKVDETPIPKHALGHY---ALVFDAVYT 479
+G L F+ ED ++AN + +GM + E P+ L LV D V +
Sbjct: 169 LGNGFPGLTVSTQFSGLEDFDLVANASPVGMGTRA-ELPLSAALLATLQPDTLVADVVTS 227
Query: 480 PKITRLLREAEESGATIVSGLEMFIGQ 506
P+IT LL A + G I +G EM Q
Sbjct: 228 PEITPLLNRARQVGCRIQTGPEMAFAQ 254
>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
pdb|4FOO|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k
Mutant From Helicobacter Pylori
Length = 271
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 39/273 (14%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 483
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 484 RLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
L A+E G +M I +A +E+F+
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYKAALSFEKFSA 247
>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FR5|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 39/273 (14%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 483
F+ ++ N TS + +E P+ K L Y L +D + + +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGFLT 214
Query: 484 RLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
L A+E G +M I QA +E+F+
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYQAALSFEKFSA 247
>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
pdb|4FPX|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n
Mutant From Helicobacter Pylori
Length = 271
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 39/273 (14%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 483
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 484 RLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
L A+E G +M I A +E+F+
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYNAALSFEKFSA 247
>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 119/273 (43%), Gaps = 39/273 (14%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 483
F+ ++ N TS + +E P+ K L Y L +D Y +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-FLT 214
Query: 484 RLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
L A+E G +M I A +E+F+
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYAAALSFEKFSA 247
>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
pdb|4FQ8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a
Mutant From Helicobacter Pylori In Complex With
Shikimate
Length = 271
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 120/273 (43%), Gaps = 39/273 (14%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFS 309
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G +
Sbjct: 4 KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 310 CTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVG-AISAIEDGLRGR 368
T+P KE A + CD++ +A GAVN ++ + L GYNTD +G +S + +
Sbjct: 64 VTLPFKERAFQVCDKIKGIALECGAVNTLVLENDE--LVGYNTDALGFYLSLKQKNYQNA 121
Query: 369 LNV-SGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGH 427
L + +GG + ALA +L +V + NR+ R + + +G
Sbjct: 122 LILGAGGSAKALACEL-----------------KKQGLQVSVLNRS-SRGLDFFQRLGCD 163
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHY----ALVFDAVYTPKIT 483
F+ ++ N TS + +E P+ K L Y L +D + +T
Sbjct: 164 CFMEPPKSAFD-----LIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LAAGFLT 214
Query: 484 RLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
L A+E G +M I QA +E+F+
Sbjct: 215 PFLSLAKELKTPFQDGKDMLIYQAALSFEKFSA 247
>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|B Chain B, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|C Chain C, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
pdb|1NPY|D Chain D, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607
Length = 271
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 119/275 (43%), Gaps = 33/275 (12%)
Query: 249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
+ DT++ + G+P + +N + +G N ++ DI + + G
Sbjct: 2 INKDTQLCMSLSGRPSNFGTT--FHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 367
+ ++P KE + DE+ A++I +VN I+ +G L YNTDY+ + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIV--NDNGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 368 R-----LNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE 422
+ ++ SGG++ A+ ++ I R + LA
Sbjct: 118 KNAKVIVHGSGGMAKAVVAAF----------------KNSGFEKLKIYARNVKTGQYLAA 161
Query: 423 TVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPI--PKHALGHYALVFDAVYTP 480
G ++ LEN + IL N TSIGM+ +E + PK + + ++ FD V P
Sbjct: 162 LYGYAYIN--SLEN---QQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMP 216
Query: 481 KITRLLREAEESGATIVSGLEMFIGQAYEQYERFT 515
T +R A+ G +SG + + QA EQ+E +T
Sbjct: 217 VETPFIRYAQARGKQTISGAAVIVLQAVEQFELYT 251
>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
pdb|1SFL|B Chain B, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, Apo Form
Length = 238
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 34 SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWE 89
S+++ ++ D++E+R+D +N + + + K + L TYR +
Sbjct: 15 SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 90 GG--QYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIR---GKKPEKCKVIVSSH 144
GG Q+ D + + LA G D ID+E Q + R + +VI+S H
Sbjct: 75 GGYGQFTNDSYLNL-ISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLV 200
N++ TP +++L + ++Q + VK A + DV + Q ++ S ++G+
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGIS 193
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDL 240
M + GLISR FGG LT+G + G APGQ + DL
Sbjct: 194 MSKLGLISRTAQGVFGGALTYGCI--GEPQAPGQIDVTDL 231
>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
pdb|1SFJ|B Chain B, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3-
Dehydroquinase, With 3-Dehydroquinate Bound
Length = 238
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 51 DLVEIRLDGLKNFNPRENIKTLIK----ESPVPTLFTYRPIWEGG--QYDGDENERVDVL 104
D++E+R+D +N + + + K + L TYR +GG Q+ D + +
Sbjct: 32 DVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNL-IS 90
Query: 105 RLAMELGADYIDVELQVAREFNDSIR---GKKPEKCKVIVSSHNYQYTPSVEDLSNLVAR 161
LA G D ID+E Q + R + +VI+S HN++ TP +++L + +
Sbjct: 91 DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFK 150
Query: 162 IQASGADIVKFATTALDITDVARVFQ-ITVHSQV---PIIGLVMGERGLISRILCAKFGG 217
+Q + VK A + DV + Q ++ S ++G+ M + GLISR FGG
Sbjct: 151 MQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGG 210
Query: 218 FLTFGTLENGIVSAPGQPTIKDL 240
LT+G + G APGQ + DL
Sbjct: 211 ALTYGCI--GEPQAPGQIDVTDL 231
>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 281
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 29/281 (10%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
M + + G P+ HSKSP ++ + + ++ + VD + + + +
Sbjct: 4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIED 363
G + T+P KE A + D + A+ GAVN +++ DG++ G NTD G + A +
Sbjct: 64 GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQV 122
Query: 364 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 423
L+G + G A G L ++ + + NRT+ +A +LAE
Sbjct: 123 LLKGATILLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAEL 169
Query: 424 VGGHALSLADLENFNPEDGMILANTTSI---GMQPKVDETPIPKHALGHYALVFDAVYTP 480
V + A + ++ N+TS G P +D P+ ++ +D +Y
Sbjct: 170 VAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGK 224
Query: 481 KITRLLREAEESG-ATIVSGLEMFIGQAYEQYERFTGL-PG 519
T + A + G A + GL M +GQA E + + GL PG
Sbjct: 225 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPG 265
>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|B Chain B, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|C Chain C, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3PGJ|D Chain D, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate
pdb|3SEF|A Chain A, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|B Chain B, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|C Chain C, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
pdb|3SEF|D Chain D, 2.4 Angstrom Resolution Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar
Eltor Str. N16961 In Complex With Shikimate And Nadph
Length = 302
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 29/281 (10%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFA 306
M + + G P+ HSKSP ++ + + ++ + VD + + + +
Sbjct: 25 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 84
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIED 363
G + T+P KE A + D + A+ GAVN +++ DG++ G NTD G + A +
Sbjct: 85 GCNVTVPFKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQV 143
Query: 364 GLRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAET 423
L+G + G A G L ++ + + NRT+ +A +LAE
Sbjct: 144 LLKGATILLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAEL 190
Query: 424 VGGHALSLADLENFNPEDGMILANTTSI---GMQPKVDETPIPKHALGHYALVFDAVYTP 480
V + A + ++ N+TS G P +D P+ ++ +D +Y
Sbjct: 191 VAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGK 245
Query: 481 KITRLLREAEESG-ATIVSGLEMFIGQAYEQYERFTGL-PG 519
T + A + G A + GL M +GQA E + + GL PG
Sbjct: 246 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPG 286
>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2EGZ|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|B Chain B, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
pdb|2YSW|C Chain C, Crystal Structure Of The 3-Dehydroquinate Dehydratase From
Aquifex Aeolicus Vf5
Length = 219
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 22/226 (9%)
Query: 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFN---PRENIKTLIKESPVPTL 81
LI VP+ + + ++ KA GAD+VE+R+D + + +E ++ + + T+
Sbjct: 2 LIAVPLDDTNFSE---NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEE-VHSQGLKTI 57
Query: 82 FTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQ----VAREFNDSIRGKKPEKC 137
T R EGG+ + E + L +DY D+EL + + +N + K
Sbjct: 58 LTIRSPEEGGREVKNREELFEELSPL----SDYTDIELSSRGLLVKLYNITKEAGK---- 109
Query: 138 KVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPII 197
K+I+S HN++ TP + ++ G I K A A DVAR+ I+ + I
Sbjct: 110 KLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYEDVARLLCISRQVEGEKI 168
Query: 198 GLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDL 243
+ MG+ G ISR+ FG +T+ +LE APGQ ++++++L
Sbjct: 169 LISMGDYGKISRLAGYVFGSVITYCSLEKAF--APGQIPLEEMVEL 212
>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5-
Dehydrogenase (Aroe) From Vibrio Cholerae
Length = 275
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 29/274 (10%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVH--LLVDDIAKFFQTYSSNDFAGFSCTIP 313
+ + G P+ HSKSP ++ + + ++ + VD + + + + G + T+P
Sbjct: 5 YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVP 64
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAIS---AIEDGLRGRLN 370
KE A + D + A+ GAVN +++ DG++ G NTD G + A + L+G
Sbjct: 65 FKEEAYRFADRLTERARLAGAVN-TLKKLDDGEILGDNTDGEGLVQDLLAQQVLLKGATI 123
Query: 371 VSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAETVGGHALS 430
+ G A G L ++ + + NRT+ +A +LAE V +
Sbjct: 124 LLIGAGGAARGVLKPLLDQQPAS-------------ITVTNRTFAKAEQLAELVAAYGEV 170
Query: 431 LADLENFNPEDGMILANTTSI---GMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLR 487
A + ++ N+TS G P +D P+ ++ +D +Y T +
Sbjct: 171 KAQAFEQLKQSYDVIINSTSASLDGELPAID--PV---IFSSRSVCYDMMYGKGYTVFNQ 225
Query: 488 EAEESG-ATIVSGLEMFIGQAYEQYERFTGL-PG 519
A + G A + GL M +GQA E + + GL PG
Sbjct: 226 WARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPG 259
>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From
Corynebacterium Glutamicum
Length = 302
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 111/281 (39%), Gaps = 29/281 (10%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
D+ + G+IG+ + S++P ++ + G V+ + D+
Sbjct: 22 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 81
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
F G + T P+K+A + DEV A +GAVN ++ + G G+NTD G +E+G
Sbjct: 82 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVI-DATGHTTGHNTDVSGFGRGMEEG 140
Query: 365 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE-- 422
L +A + V ++ +A+ RA+ LA+
Sbjct: 141 L----------PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI 190
Query: 423 --TVGGHALSLADLENFN----PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDA 476
VG A+ D DG++ N T +GM P T L V D
Sbjct: 191 NNAVGREAVVGVDARGIEDVIAAADGVV--NATPMGM-PAHPGTAFDVSCLTKDHWVGDV 247
Query: 477 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 517
VY P T LL+ A G + G M I QA + + FTGL
Sbjct: 248 VYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGL 288
>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Nad
pdb|3JYP|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Quinate And Nadh
pdb|3JYQ|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In
Complex With Shikimate And Nadh
Length = 283
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 111/281 (39%), Gaps = 29/281 (10%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
D+ + G+IG+ + S++P ++ + G V+ + D+
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
F G + T P+K+A + DEV A +GAVN ++ + G G+NTD G +E+G
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVI-DATGHTTGHNTDVSGFGRGMEEG 121
Query: 365 LRGRLNVSGGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE-- 422
L +A + V ++ +A+ RA+ LA+
Sbjct: 122 L----------PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI 171
Query: 423 --TVGGHALSLADLENFN----PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDA 476
VG A+ D DG++ N T +GM P T L V D
Sbjct: 172 NNAVGREAVVGVDARGIEDVIAAADGVV--NATPMGM-PAHPGTAFDVSCLTKDHWVGDV 228
Query: 477 VYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGL 517
VY P T LL+ A G + G M I QA + + FTGL
Sbjct: 229 VYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGL 269
>pdb|3L9C|A Chain A, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
pdb|3L9C|B Chain B, The Crystal Structure Of Smu.777 From Streptococcus Mutans
Ua159
Length = 259
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 32/251 (12%)
Query: 7 LVASGSKLVS--GG--MRKNPTLICVPIMGESVDKM-VVDMGKANASGADLVEIRLDGLK 61
LV GS + S GG M + I VP+M +++++ +D+ + +++ D++E R D L
Sbjct: 14 LVPRGSHMASMTGGQQMGRGSMKIVVPVMPQNIEEANQLDLTRIDST--DIIEWRADYLV 71
Query: 62 NFNPRENIKTLI-----KESPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYI 115
+++I T+ K S +FT R EGG + + ++R +A DYI
Sbjct: 72 ----KDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYI 127
Query: 116 DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT 175
D E R+ + + + +I+S HN++ TP E+L + + + A +VK A
Sbjct: 128 DFEYFSYRDVLEEMY----DFSNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVM 181
Query: 176 ------ALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
LD+ + R F+ T++ + + M + G ISR+ G TF +LE
Sbjct: 182 PKNEQDVLDLMNYTRGFK-TLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE-- 238
Query: 230 SAPGQPTIKDL 240
SAPGQ ++ D+
Sbjct: 239 SAPGQISLADM 249
>pdb|1P74|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P74|B Chain B, Crystal Structure Of Shikimate Dehydrogenase (Aroe) From
Haemophilus Influenzae
pdb|1P77|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) From
Haemophilus Influenzae
Length = 272
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 255 VFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL--VDDIAKFFQTYSSNDFAGFSCTI 312
++ + G P+ SKSP++ N+ ++ L +D + + G + T
Sbjct: 3 LYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITS 62
Query: 313 PHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE--DGLRGRLN 370
P KE A + DE AK A N + ++ DGKL+ NTD +G ++ ++ + LR +
Sbjct: 63 PFKERAYQLADEYSQRAKLAEACNTL-KKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQH 121
Query: 371 VS-GGVSSALAGKLFVVIXXXXXXXXXXXXXXXXXXRVVIANRTYDRARELAE 422
V G A G L ++ +V+ANRT+ + +ELAE
Sbjct: 122 VLILGAGGATKGVLLPLLQAQQ--------------NIVLANRTFSKTKELAE 160
>pdb|2OCZ|A Chain A, The Structure Of A Putative 3-dehydroquinate Dehydratase
From Streptococcus Pyogenes
Length = 231
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 28/231 (12%)
Query: 22 NPTLICVPIMGESVDK-MVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLI-----KE 75
N I P+ D+ +D+ K +L+E R D F P++ I + K
Sbjct: 2 NAXRIVAPVXPRHFDEAQAIDISKY--EDVNLIEWRAD----FLPKDEIVAVAPAIFEKF 55
Query: 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKP 134
+ +FT R + EGG E VD+++ + DYID E + S+ +
Sbjct: 56 AGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHK----SVFQEXL 111
Query: 135 EKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATT------ALDITDVARVFQI 188
+ +I+S HN++ TP E+L + +VK A LD+ + R F+
Sbjct: 112 DFPNLILSYHNFEETP--ENLXEAFSEXTKLAPRVVKIAVXPQSEQDVLDLXNYTRGFK- 168
Query: 189 TVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKD 239
T++ + + G+ G +SR G T+ +L++ VS PGQ T+ D
Sbjct: 169 TLNPEQEFATISXGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLND 217
>pdb|1GPJ|A Chain A, Glutamyl-Trna Reductase From Methanopyrus Kandleri
Length = 404
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 407 VVIANRTYDRARELAETVGGHALSLADLENFNPEDGMILANTTS 450
V++ANRTY+RA ELA +GG A+ +L + ++++ T +
Sbjct: 194 VLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 173 ATTAL-DITDVARVFQITVHSQVPIIGL------VMGERGLISRILCAKFGG----FLTF 221
ATT + +I DV R+ +I HS + +GL +G++ ++ + G +
Sbjct: 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIRE 65
Query: 222 GTLENGIVSAPGQP-TIKDLLDLYNFRQMGPDTKVFGIIGKPV---GHSKSPILYNEAFK 277
G + V GQP T K + + + +GPDT I G + SK+ L +
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 278 SVGFN 282
S+G
Sbjct: 126 SIGVR 130
>pdb|2F8Q|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2F8Q|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 353
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 94 DGDENERVDVLRLAMEL---GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP 150
DG NER LR ++ G +YI V + AR++ E K+ ++ +N + TP
Sbjct: 152 DGTPNERG--LRESVWYQITGDEYIRVAFETARKY-------AGEDAKLFINDYNTEVTP 202
Query: 151 SVEDLSNLVARIQASGADI 169
+ L NLV + A G I
Sbjct: 203 KRDHLYNLVQDLLADGVPI 221
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 208 SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKV-FGIIGKPVG-- 264
+RI A F + L NGI APG+P I DLL N ++ PD++ G P+G
Sbjct: 194 TRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWEN--RVIPDSEHDLGFDVDPMGWK 251
Query: 265 ---HSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFA 306
+ P+L + + + + L D + +Q + D+A
Sbjct: 252 VVLSPRVPVLAKASLQPTYAD--LLSSLQDQLPSSYQKPADFDWA 294
>pdb|2FGL|A Chain A, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
pdb|2FGL|B Chain B, An Alkali Thermostable F10 XYLANASE FROM ALKALOPHILIC
Bacillus Sp. Ng-27
Length = 354
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 94 DGDENERVDVLRLAMEL---GADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTP 150
DG NER LR ++ G +YI V + AR++ E K+ ++ +N + TP
Sbjct: 153 DGTPNERG--LRESVWYQITGDEYIRVAFETARKY-------AGEDAKLFINDYNTEVTP 203
Query: 151 SVEDLSNLVARIQASGADI 169
+ L NLV + A G I
Sbjct: 204 KRDHLYNLVQDLLADGVPI 222
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 208 SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTK-VFGIIGKPVG-- 264
+RI A F + L NGI APG+P I DLL N ++ PD++ G P+G
Sbjct: 223 TRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWEN--RVIPDSEHDLGFDVDPMGWK 280
Query: 265 ---HSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFA 306
+ P+L + + + + L D + +Q + D+A
Sbjct: 281 VVLSPRVPVLAKASLQPTYAD--LLSSLQDQLPSSYQKPADFDWA 323
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 10/105 (9%)
Query: 208 SRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF------RQMGPDTKVFGIIGK 261
+RI A F + L NGI APG+P I DLL N +G D G K
Sbjct: 194 TRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPDSEHDLGGDVDPMGW--K 251
Query: 262 PVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFA 306
V + P+L + + + + L D + +Q + D+A
Sbjct: 252 VVLSPRVPVLAKASLQPTYAD--LLSSLQDQLPSSYQKPADFDWA 294
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 277 KSVGFNGVFV----------HLLVDDIAK---FFQTYSSNDFAGFSCTIPHKEAAVKCCD 323
K +GF+G F+ H D+A F QTY D+ F+ H A +
Sbjct: 218 KEIGFDGQFLIEPKPKEPTKHQYDFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFE 277
Query: 324 EVDTVAKSIGAVNCIIRRQSDGKLFGYNTD 353
VA+ G + + Q D L G++TD
Sbjct: 278 HELRVARIHGMLGSVDANQGD-MLLGWDTD 306
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 87 IWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSHNY 146
+W G GDE E ++ + + VE Q F ++ GK P + N
Sbjct: 220 LWCGKGCSGDEREMAKMVADTISRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENL 279
Query: 147 QYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQV 194
TP + + SN R A+ +I F L+ D VF + V QV
Sbjct: 280 VITPRLFECSNKTGRFLAT--EIPDFNQDDLEEDD---VFLLDVWDQV 322
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 194 VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDT 253
+PII GE L F L G + +G + G I + D ++ P++
Sbjct: 55 LPIISFTEGESSL-------SFSKALNIGIILSGGPAPGGHNVISGVFDA--IKKFNPNS 105
Query: 254 KVFGIIGKPVG 264
K+FG G P+G
Sbjct: 106 KLFGFKGGPLG 116
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 173 ATTAL-DITDVARVFQITVHSQVPIIGL------VMGERGLISRILCAKFGGF----LTF 221
ATT + +I DV R+ +I HS + +GL +G + ++ + G +
Sbjct: 21 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGXVGQLAARRAAGVVLEXIRE 80
Query: 222 GTLENGIVSAPGQP-TIKDLLDLYNFRQMGPDTKVFGIIGKPV---GHSKSPILYNEAFK 277
G + V GQP T K + + +GPDT I G + SK+ L +
Sbjct: 81 GKIAGRAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRR 140
Query: 278 SVG 280
S+G
Sbjct: 141 SIG 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,769,624
Number of Sequences: 62578
Number of extensions: 758206
Number of successful extensions: 1795
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1643
Number of HSP's gapped (non-prelim): 66
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)