RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007151
(616 letters)
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 689 bits (1781), Expect = 0.0
Identities = 382/500 (76%), Positives = 435/500 (87%), Gaps = 2/500 (0%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPT 80
KNP+LIC P+M +S+DKMV++ KA+ GADLVEIRLD LK+FNP E++KT+IK+SP+PT
Sbjct: 2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 81 LFTYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVI 140
LFTYRP WEGGQY+GDENER DVLRLAMELGADYIDVELQVA EF SI GKKP K KVI
Sbjct: 62 LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 141 VSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLV 200
VSSHNYQ TPSVEDL LVARIQ +GADIVK ATTA+DI DVAR+F IT +QVP IGLV
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 201 MGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIG 260
MGERGL+SRILC+KFGG+LTFGTL++ VSAPGQPTIKDLLDLYNFR++GPDTKV+GIIG
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 261 KPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVK 320
KPV HSKSPI++N+AFKSV FNGV+VHLLVD++ F Q YSS+DFAGFSCTIPHKEAA++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 321 CCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR--GRLNVSGGVSSA 378
CCDEVD +AKSIGAVN I+RR+SDGKL GYNTD +G+ISAIEDGLR G + SS
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFN 438
LA K VVIGAGGAGKALAYGAK KGA+VVIANRTY+RA ELAE +GG ALSL DL+N++
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYH 421
Query: 439 PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVS 498
PEDGM+LANTTS+GMQP V+ETPI K AL HYALVFDAVYTP+ITRLLREAEESGA VS
Sbjct: 422 PEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVS 481
Query: 499 GLEMFIGQAYEQYERFTGLP 518
G EMF+ QAYEQ+E FTGLP
Sbjct: 482 GSEMFVRQAYEQFEIFTGLP 501
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 338 bits (869), Expect = e-112
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 28/304 (9%)
Query: 230 SAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLL 289
S+ ++L N + ++ G++ P+ HS SP + N+A + G ++
Sbjct: 8 SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFE 67
Query: 290 V--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKL 347
V A + + G ++P+K+ A + DE+ AK +GA+N I+ DG L
Sbjct: 68 VDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYL 125
Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-R 406
GYNTD G I AI++ + GK V++GAGGA A+ A +G
Sbjct: 126 RGYNTDGTGHIRAIKESGFD-----------MRGKTMVLLGAGGAATAIGAQAAIEGIKE 174
Query: 407 VVIANRT---YDRARELAETVGGHA------LSLADLENFNP--EDGMILANTTSIGMQP 455
+ + NR +++A A+ V + LAD F IL N T +GM+P
Sbjct: 175 IKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKP 234
Query: 456 KVDETPI-PKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERF 514
+E+ I L LV + VY P +T+LL++A+++G + G M + Q EQ+E +
Sbjct: 235 LENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELW 294
Query: 515 TGLP 518
TG
Sbjct: 295 TGKA 298
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein
structure initiative; HET: NAP; 2.35A
{Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5
Length = 287
Score = 321 bits (826), Expect = e-106
Identities = 101/280 (36%), Positives = 147/280 (52%), Gaps = 25/280 (8%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
+ TKV G+IG PV HS SPI++N AFK G N V+V V +++ +
Sbjct: 7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
GF+ TIPHK +K DE+D A+ IGAVN I DGK GYNTD +GA A+E+ +
Sbjct: 67 GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEEI- 123
Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG- 425
+ K V+ GAGGA +A+A+ AK ++IANRT ++A LA+ +
Sbjct: 124 ----------GRVKDKNIVIYGAGGAARAVAFEL-AKDNNIIIANRTVEKAEALAKEIAE 172
Query: 426 ------GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPI-PKHALGHYALVFDAVY 478
G + + L+ + + I+ N T IGM P +D PI L +V D +Y
Sbjct: 173 KLNKKFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIY 231
Query: 479 TPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
P T LL+EA++ A ++GL M I Q ++ +TG+
Sbjct: 232 NPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVE 271
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 319 bits (820), Expect = e-105
Identities = 83/308 (26%), Positives = 136/308 (44%), Gaps = 29/308 (9%)
Query: 227 GIVSAPGQPTIKDLLDLYNFRQM-GPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVF 285
G+ + + T++ G+I P+ HS SP ++NEAF +G + V+
Sbjct: 10 GVDLGTENLYFQSNAMTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVY 69
Query: 286 VHLLV--DDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQS 343
+ V ++ Q + + + G++ ++P+K K D++ A+ +GAVN ++
Sbjct: 70 LAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND-- 127
Query: 344 DGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAK 403
DG L G+ TD G + A+++ + GK + GAGGA A+ A
Sbjct: 128 DGVLTGHITDGTGYMRALKEAGHD-----------IIGKKMTICGAGGAATAICIQAALD 176
Query: 404 GA-RVVIANRT---YDRARELAETVGGH------ALSLADLENFNPE--DGMILANTTSI 451
G + I NR Y A + E + + D E E + +I N T +
Sbjct: 177 GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGV 236
Query: 452 GMQPKVDETPIP-KHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQ 510
GM+P ET +P L +V D VY P TRLL AEE G ++GL M + Q +
Sbjct: 237 GMKPFEGETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKA 296
Query: 511 YERFTGLP 518
+E +T
Sbjct: 297 FEIWTHKE 304
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction,
structural genomics, NPPSFA; 2.25A {Geobacillus
kaustophilus}
Length = 297
Score = 318 bits (818), Expect = e-105
Identities = 94/279 (33%), Positives = 141/279 (50%), Gaps = 17/279 (6%)
Query: 245 NFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSS 302
N G KV+G+IG PV HS SP+++N+AF +G + V + +
Sbjct: 15 NLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRA 74
Query: 303 NDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIE 362
AG + TIPHK A + DEVD A+ IGAVN II DG+L GYNTD +G + A+E
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALE 132
Query: 363 DGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELA 421
+ + L GK +VIGAGG + + + + A R+ +ANRT ++A L
Sbjct: 133 EEMNI----------TLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLV 182
Query: 422 ETVGGHALSLADLENFN--PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYT 479
+ L + I+ NTTS+GM P+V+ P+ L +V D +Y
Sbjct: 183 REGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYN 242
Query: 480 PKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
P T+ L+EA+ GA + +G+ M + Q +E++TG
Sbjct: 243 PLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQW 281
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 311 bits (799), Expect = e-102
Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 25/274 (9%)
Query: 249 MGPDTKV-FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAG 307
+ DT++ + G+P + +N + +G N ++ DI + + G
Sbjct: 2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 308 FSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRG 367
+ ++P KE + DE+ A++I +VN I+ +G L YNTDY+ + IE
Sbjct: 60 CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117
Query: 368 RLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGG 426
+ +V G+GG KA+ + ++ I R + LA G
Sbjct: 118 K------------NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG- 164
Query: 427 HALSLADLENFNPEDGMILANTTSIGMQPKVDETPI--PKHALGHYALVFDAVYTPKITR 484
A + + + IL N TSIGM+ +E + PK + + ++ FD V P T
Sbjct: 165 ----YAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETP 220
Query: 485 LLREAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
+R A+ G +SG + + QA EQ+E +T
Sbjct: 221 FIRYAQARGKQTISGAAVIVLQAVEQFELYTHQR 254
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 306 bits (787), Expect = e-100
Identities = 78/278 (28%), Positives = 145/278 (52%), Gaps = 21/278 (7%)
Query: 243 LYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTY 300
++ + T+++G+IG PV HS SP+ N + G N V++ + +++ K F+ +
Sbjct: 2 HHHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGF 61
Query: 301 SSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISA 360
+ G + T+P KE + D V+ AK IGAVN + +GK +GYNTD++G + +
Sbjct: 62 KALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKS 119
Query: 361 IEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL 420
++ + + K +V+GAGGA +A+ Y +GA+V + NRT ++A +L
Sbjct: 120 LKSLIPE-----------VKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168
Query: 421 AETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTP 480
A+ ++ + + ++ NTTS+G++ + D + +V D +Y
Sbjct: 169 AQKFPLEVVNSPEEV---IDKVQVIVNTTSVGLKDE-DPEIFNYDLIKKDHVVVDIIYKE 224
Query: 481 KITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
T+LL++A+E GA ++ GL M + Q E ++ + G
Sbjct: 225 --TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCE 260
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural
genomics, NPPSFA, Na project on protein structural and
functional analyses; HET: SKM; 1.65A {Thermus
thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*
Length = 263
Score = 301 bits (774), Expect = 5e-99
Identities = 86/267 (32%), Positives = 128/267 (47%), Gaps = 23/267 (8%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
F ++G PV HS SP ++ A +S+G G + + + + F G + T
Sbjct: 2 LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLT 60
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
+P KEAA+ D V A+ IGAVN +++ +G+LFG+NTD G + A++ G
Sbjct: 61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAGG------ 112
Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
L G +V+GAGGAG+A+A+ + G V + NRT RA LAE G A+ L
Sbjct: 113 -----IPLKGPA-LVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPL 166
Query: 432 ADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEE 491
+L N T +G++ +P+P D VY P TR LREA+
Sbjct: 167 EKAREAR-----LLVNATRVGLEDP-SASPLPAELFPEEGAAVDLVYRPLWTRFLREAKA 220
Query: 492 SGATIVSGLEMFIGQAYEQYERFTGLP 518
G + +GL M Q + +TGL
Sbjct: 221 KGLKVQTGLPMLAWQGALAFRLWTGLL 247
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 301 bits (773), Expect = 1e-98
Identities = 75/273 (27%), Positives = 127/273 (46%), Gaps = 21/273 (7%)
Query: 249 MGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFA 306
M +T ++G+IG+ +GHS S ++ F+ VG G++ V + + + T+
Sbjct: 1 MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60
Query: 307 GFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLR 366
G + TIP+K +K E+ A+ IGAVN + + G+NTDY+G +
Sbjct: 61 GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115
Query: 367 GRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR-VVIANRTYDRARELAETVG 425
V + + VV+G+GGA +A+ K A+ + + R ++ E+
Sbjct: 116 --FRVE------IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF- 166
Query: 426 GHALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRL 485
+S +L N G ++ N T GM PK E+P+ K + ++ D +Y P T
Sbjct: 167 -KVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETLF 222
Query: 486 LREAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
L+ A ESG V+GL M + QA E + +
Sbjct: 223 LKYARESGVKAVNGLYMLVSQAAASEEIWNDIS 255
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 298 bits (766), Expect = 2e-97
Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 27/281 (9%)
Query: 252 DTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV-------DDIAKFFQTYSSND 304
D+ + G+IG+ + S++P ++ + G V+ + D+
Sbjct: 3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62
Query: 305 FAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDG 364
F G + T P+K+A + DEV A +GAVN ++ G G+NTD G +E+G
Sbjct: 63 FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121
Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAET 423
L V +GAGG G A+AY G ++ +A+ RA+ LA+
Sbjct: 122 LPN-----------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170
Query: 424 VGGH----ALSLADLENFN--PEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAV 477
+ A+ D + N T +GM T L V D V
Sbjct: 171 INNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVGDVV 229
Query: 478 YTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
Y P T LL+ A G + G M I QA + + FTGL
Sbjct: 230 YMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLE 270
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 286 bits (735), Expect = 5e-93
Identities = 69/271 (25%), Positives = 120/271 (44%), Gaps = 29/271 (10%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAF----KSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGF 308
K FG+ G P+ HSKSP+++N F K + F G + +L+ + + +G
Sbjct: 3 LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62
Query: 309 SCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGR 368
+ T+P KE A + CD++ +A GAVN ++ + +L GYNTD +G +++
Sbjct: 63 NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115
Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
+ +++GAGG+ KALA K +G +V + NR+ + + +G
Sbjct: 116 ----------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGL-DFFQRLGCDC 164
Query: 429 LSLADLENFNPEDGMILANTTSIGMQPKVD-ETPIPKHALGHYALVFDAVYTPKITRLLR 487
F+ ++ N TS + ++ + K L +D Y T L
Sbjct: 165 FMEPPKSAFD-----LIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGFL-TPFLS 218
Query: 488 EAEESGATIVSGLEMFIGQAYEQYERFTGLP 518
A+E G +M I QA +E+F+
Sbjct: 219 LAKELKTPFQDGKDMLIYQAALSFEKFSASQ 249
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold,
amino-acid biosynthesis, amino acid biosynthesis, NADP,
oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB:
3doo_A*
Length = 277
Score = 280 bits (719), Expect = 1e-90
Identities = 82/265 (30%), Positives = 135/265 (50%), Gaps = 20/265 (7%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
F +IG P+ HS SP++++ F+S+ + + V + + S GF+ TIP
Sbjct: 3 FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
HKE + D+++ AKS+GAVN ++ + DGK GYNTD +G ++ ++ G
Sbjct: 63 HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEG------ 114
Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+ +++GAGGA K +A K + +ANRT R + + ++L+
Sbjct: 115 -----IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNIN--KINLS 167
Query: 433 DLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEES 492
E+ + I+ NTT GM ++ I + L + LV D VY P T +L EAE+
Sbjct: 168 HAESHLD-EFDIIINTTPAGMNGN-TDSVISLNRLASHTLVSDIVYNPYKTPILIEAEQR 225
Query: 493 GATIVSGLEMFIGQAYEQYERFTGL 517
G I +GL+MF+ Q E ++ +T L
Sbjct: 226 GNPIYNGLDMFVHQGAESFKIWTNL 250
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A
{Thermotoga maritima}
Length = 253
Score = 266 bits (683), Expect = 1e-85
Identities = 85/267 (31%), Positives = 128/267 (47%), Gaps = 33/267 (12%)
Query: 256 FGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCTIP 313
F IIG PV HS SP LYNE FK G N + + + + ++ GF+ TIP
Sbjct: 3 FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRI-LEEYDGFNATIP 61
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSG 373
HKE ++ + + A+ I AVNC+ R + GYNTD+VG + ++E
Sbjct: 62 HKERVMRYVEPSED-AQRIKAVNCVFRGK------GYNTDWVGVVKSLEG---------- 104
Query: 374 GVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+ VV+GAGGA +A+ Y + + + NRT +RA+ L V SL
Sbjct: 105 ----VEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVK--IFSLD 158
Query: 433 DLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEES 492
L+ L NTTS+GM+ +E P+ +L + +LV+D +Y T L+ +A +
Sbjct: 159 QLDEVVK-KAKSLFNTTSVGMKG--EELPVSDDSLKNLSLVYDVIYFD--TPLVVKARKL 213
Query: 493 GAT-IVSGLEMFIGQAYEQYERFTGLP 518
G I+ G MF QA E + +
Sbjct: 214 GVKHIIKGNLMFYYQAMENLKIWGIYD 240
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft
separation, oxidoreductase; HET: NAP; 1.50A {Escherichia
coli} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 241 bits (618), Expect = 1e-75
Identities = 78/270 (28%), Positives = 121/270 (44%), Gaps = 24/270 (8%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
+ + + G P+ HSKSP ++ + + + + +L +D + S G + T
Sbjct: 2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
+P KE A DE+ A GAVN ++R + DG+L G NTD VG +S +E RL+
Sbjct: 62 VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLE-----RLSF 115
Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG----H 427
G ++IGAGGA + + + V I NRT RA ELA+
Sbjct: 116 I------RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQ 169
Query: 428 ALSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLR 487
ALS+ +LE + ++ N TS G+ D IP + +D Y T L
Sbjct: 170 ALSMDELEG---HEFDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQKGKTPFLA 224
Query: 488 EAEESGATIVS-GLEMFIGQAYEQYERFTG 516
E+ G+ + GL M + QA + + G
Sbjct: 225 WCEQRGSKRNADGLGMLVAQAAHAFLLWHG 254
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for
structural genomics of infec diseases, csgid; HET: EPE;
1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A*
3pgj_A* 3o8q_B*
Length = 281
Score = 240 bits (615), Expect = 4e-75
Identities = 66/274 (24%), Positives = 117/274 (42%), Gaps = 20/274 (7%)
Query: 248 QMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDF 305
M + + G P+ HSKSP ++ + + ++ V D + + + +
Sbjct: 3 AMASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGG 62
Query: 306 AGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL 365
G + T+P KE A + D + A+ GAVN + + DG++ G NTD G + +
Sbjct: 63 RGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLL--- 118
Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETV 424
V L G ++IGAGGA + + + A + + NRT+ +A +LAE V
Sbjct: 119 --AQQVL------LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELV 170
Query: 425 GGHA-LSLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKIT 483
+ + E +I+ N+TS + + I ++ +D +Y T
Sbjct: 171 AAYGEVKAQAFEQLKQSYDVII-NSTSASLDG--ELPAIDPVIFSSRSVCYDMMYGKGYT 227
Query: 484 RLLREAEESGAT-IVSGLEMFIGQAYEQYERFTG 516
+ A + G + GL M +GQA E + + G
Sbjct: 228 VFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRG 261
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A
{Pseudomonas putida}
Length = 272
Score = 239 bits (613), Expect = 6e-75
Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 18/269 (6%)
Query: 253 TKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSC 310
+ + +IG+P+ H+KSP+++ ++ + + DD + S G +
Sbjct: 2 SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61
Query: 311 TIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLN 370
T P K A + D A+ A N + DG++ N D +G + IE+ L
Sbjct: 62 TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEE----NLG 115
Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHAL 429
L + +++GAGGA + +A + +VIANR +A L + L
Sbjct: 116 EP------LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRL 169
Query: 430 SLADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREA 489
++ E + I+ N TS + D P+P LG AL ++ Y +T LR A
Sbjct: 170 RISRYEALEGQSFDIVVNATSASLTA--DLPPLPADVLGEAALAYELAYGKGLTPFLRLA 227
Query: 490 EESGA-TIVSGLEMFIGQAYEQYERFTGL 517
E G + G+ M + QA E + + G+
Sbjct: 228 REQGQARLADGVGMLVEQAAEAFAWWRGV 256
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A
{Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB:
1p74_A*
Length = 272
Score = 232 bits (595), Expect = 3e-72
Identities = 64/269 (23%), Positives = 113/269 (42%), Gaps = 19/269 (7%)
Query: 254 KVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLV--DDIAKFFQTYSSNDFAGFSCT 311
++ + G P+ SKSP++ N+ ++ L D + + G + T
Sbjct: 2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61
Query: 312 IPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNV 371
P KE A + DE AK A N + + DGKL+ NTD +G ++ ++ RLN
Sbjct: 62 SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQ-----RLNW 115
Query: 372 SGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LS 430
+ +++GAGGA K + +V+ANRT+ + +ELAE + +
Sbjct: 116 L------RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQ 169
Query: 431 LADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYT-PKITRLLREA 489
+++ + ++ N TS G+ + L + +D Y T +
Sbjct: 170 AVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTPFIALC 227
Query: 490 EESGATIVS-GLEMFIGQAYEQYERFTGL 517
+ G T VS G M + QA + + G+
Sbjct: 228 KSLGLTNVSDGFGMLVAQAAHSFHLWRGV 256
>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; HET: TLA; 1.75A {Aquifex
aeolicus} PDB: 2ysw_A
Length = 219
Score = 224 bits (573), Expect = 6e-70
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
Query: 25 LICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTL--IKESPVPTLF 82
LI VP+ + + + KA GAD+VE+R+D + + + L + + T+
Sbjct: 2 LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
Query: 83 TYRPIWEGGQYDGDENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVS 142
T R EGG+ + E + + +DY D+EL K K+I+S
Sbjct: 59 TIRSPEEGGREVKNREELFE----ELSPLSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114
Query: 143 SHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMG 202
HN++ TP + ++ G I K A A DVAR+ I+ + I + MG
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173
Query: 203 ERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
+ G ISR+ FG +T+ +LE APGQ ++++++L
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKA--FAPGQIPLEEMVELRK 214
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis,
3-dehydroquinase, structural genomi NPPSFA; 2.00A
{Geobacillus kaustophilus}
Length = 257
Score = 225 bits (574), Expect = 1e-69
Identities = 67/239 (28%), Positives = 102/239 (42%), Gaps = 13/239 (5%)
Query: 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
IC P++GE K++ + + DL+E R D + + +E + +
Sbjct: 20 PCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEI 79
Query: 79 PTLFTYRPIWEGGQY-DGDENERVDVLRLAMELGA-DYIDVELQVAREFNDSIRGKKPEK 136
P LFT R EGGQ +E E ++ GA D +D EL D R +
Sbjct: 80 PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECS 139
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQ--- 193
++VS H + TP E L + + + GADI K A DV + Q T ++
Sbjct: 140 VWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARREL 199
Query: 194 -VPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
+P+I + MG G I+R+ FG +TF SAPGQ I D+ + + Q
Sbjct: 200 AIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQ--SSAPGQIPIDDVRTVLSILQTYS 256
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover,
shikimate pathway, lyase; 1.90A {Staphylococcus aureus
subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Length = 238
Score = 223 bits (569), Expect = 3e-69
Identities = 58/240 (24%), Positives = 103/240 (42%), Gaps = 17/240 (7%)
Query: 19 MRKNPTLICVPIMGE-SVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIK--- 74
M + I + S+++ ++ D++E+R+D +N + + + K
Sbjct: 1 MTH--VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKV 58
Query: 75 -ESPVPTLFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDS---I 129
+ L TYR +GG + ++++ LA G D ID+E Q + I
Sbjct: 59 MQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRII 118
Query: 130 RGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT 189
+ +VI+S HN++ TP +++L + ++Q + VK A + DV + Q
Sbjct: 119 THLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAM 178
Query: 190 V----HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
++G+ M + GLISR FGG LT+G + APGQ + DL
Sbjct: 179 STFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGE--PQAPGQIDVTDLKAQVT 236
>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate,
amino-acid biosynthesis, aromatic amino acid
biosynthesis, lyase; HET: DHS; 2.20A {Clostridium
difficile}
Length = 258
Score = 215 bits (549), Expect = 6e-66
Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 14/235 (5%)
Query: 24 TLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-----SPV 78
ICVPI+G++ ++ + + + D++E R+D +N + +K ++ E +
Sbjct: 20 PKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDI 79
Query: 79 PTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDSIRGK-KPEK 136
P LFT+R + EGG+ + + + G D IDVEL + E D + ++
Sbjct: 80 PLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKE 139
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
KVI+S+H++ TP E++ + + R+Q GAD+ K A + DV + + T ++
Sbjct: 140 VKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIY 199
Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNF 246
+ PII + M G+ISR+ FG LTFG ++ VSAPGQ + K+L + N
Sbjct: 200 ADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS--VSAPGQISFKELNSVLNL 252
>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus
pyogenes, dehydroshikimate, PSI-2, protein ST
initiative; HET: MSE; 1.85A {Streptococcus pyogenes
serotype M1}
Length = 231
Score = 214 bits (546), Expect = 7e-66
Identities = 54/237 (22%), Positives = 95/237 (40%), Gaps = 16/237 (6%)
Query: 22 NPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SPVPT 80
N I P+M D+ + + +L+E R D L + ++ +
Sbjct: 2 NAMRIVAPVMPRHFDEAQ-AIDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60
Query: 81 LFTYRPIWEGGQYDGDENERVDVL-RLAMELGADYIDVELQVAREFNDSIRGKKPEKCKV 139
+FT R + EGG E VD++ + DYID E + + + +
Sbjct: 61 IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEML----DFPNL 116
Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VHSQV 194
I+S HN++ TP E+L + + +VK A DV + T ++ +
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174
Query: 195 PIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGP 251
+ MG+ G +SR G T+ +L++ VS PGQ T+ D+ + +M
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDH--VSGPGQVTLNDMKRIIEVLEMDI 229
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for
structural genomics of infec diseases, csgid, TIM
barrel, lyase; 1.03A {Salmonella enterica subsp} PDB:
3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A
1l9w_A* 1qfe_A*
Length = 276
Score = 212 bits (541), Expect = 1e-64
Identities = 64/237 (27%), Positives = 111/237 (46%), Gaps = 14/237 (5%)
Query: 21 KNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE----- 75
+ I V +MG+++ + + + D++E R+D N E++
Sbjct: 37 EGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREII 96
Query: 76 SPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMELG-ADYIDVELQVAREFNDS-IRGKK 133
+ P LFT+R EGG+ + +D+ R A++ G D ID+EL + + +
Sbjct: 97 TDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAH 156
Query: 134 PEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITV--- 190
VI+S+H++ TP+ E++ + ++Q GADI K A DV + TV
Sbjct: 157 QHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQ 216
Query: 191 --HSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
++ PII + M + G+ISR+ FG TFG ++ SAPG ++ DL +
Sbjct: 217 ERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKA--SAPGAISVADLRTVLT 271
>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis,
aromatic amino acid biosynthe schiff base, lyase; 1.60A
{Streptococcus mutans}
Length = 259
Score = 211 bits (537), Expect = 3e-64
Identities = 56/234 (23%), Positives = 102/234 (43%), Gaps = 16/234 (6%)
Query: 19 MRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKE-SP 77
M + I VP+M +++++ + D++E R D L + + ++ S
Sbjct: 30 MGRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSG 88
Query: 78 VPTLFTYRPIWEGGQYDGDENERVDVLR-LAMELGADYIDVELQVAREFNDSIRGKKPEK 136
+FT R EGG + + ++R +A DYID E R+ + + +
Sbjct: 89 HEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DF 144
Query: 137 CKVIVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQIT-----VH 191
+I+S HN++ TP E+L + + + A +VK A + DV + T ++
Sbjct: 145 SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLN 202
Query: 192 SQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
+ + M + G ISR+ G TF +LE SAPGQ ++ D+ +
Sbjct: 203 PNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQE--SAPGQISLADMRKIKE 254
>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A
{Archaeoglobus fulgidus}
Length = 196
Score = 197 bits (503), Expect = 5e-60
Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 31/221 (14%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKESPVPTLFTYR 85
+ + ++ A AD+VE+R+D R + + T R
Sbjct: 3 LVATLSSPEELEL--------AEKADVVELRIDLFDFSGARVDK---------EKILTCR 45
Query: 86 PIWEGGQYDGDENERVDVLRLAME-LGADYIDVELQVAREFNDSIRGKKPEKCKVIVSSH 144
+ +GG+++GDE ER++ ++ A + L DY+D+E + D C++I S H
Sbjct: 46 RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAFDF-------NCRIIESYH 98
Query: 145 NYQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGER 204
N+ TP +L ++ D+VK AT DV + +I + ++ +MGER
Sbjct: 99 NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154
Query: 205 GLISRILCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYN 245
+R+L A G + + + APGQ ++ D ++ +
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGS--PKAPGQISLDDAREIIS 193
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 64.8 bits (159), Expect = 9e-13
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 371 VSGGVSSA---LAGKLF----VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET 423
VS + S + K +++G G +A +V +A R D R AE
Sbjct: 6 VS--IPSIVYDIVRKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEK 63
Query: 424 VGGHALSLADLEN 436
+ + D+++
Sbjct: 64 YEYEYVLINDIDS 76
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 60.7 bits (148), Expect = 5e-10
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 371 VSGGVSSA---LAGKLF--------VVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRAR 418
VS + SA LA + +V+GAG GK +A +G V++ANRTY+RA
Sbjct: 148 VS--IGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAV 205
Query: 419 ELAETVGGHALSLADLEN 436
ELA +GG A+ +L +
Sbjct: 206 ELARDLGGEAVRFDELVD 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 6e-09
Identities = 74/425 (17%), Positives = 122/425 (28%), Gaps = 146/425 (34%)
Query: 80 TLFTYRPIWEGGQYDGDENERVDVLRLAMELGADY-------IDV------ELQVAREFN 126
+F GGQ G+ ++ + LR +L Y I EL
Sbjct: 158 AIF-------GGQ--GNTDDYFEELR---DLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 127 DSIRGK---------KPEK-------------CKVI---------VSSHNYQYTPSVEDL 155
+ + + P C +I V++ +TP
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG---- 261
Query: 156 SNLVARIQAS---GADIV------------KFATTALDITDVARVFQITVHSQ--VPIIG 198
L + ++ + +V F + V F I V P
Sbjct: 262 -ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTS 318
Query: 199 L--------VMGERGLISRILCAKFGGFLTFGTLENGI----VSAPGQPTIKDLLDLYNF 246
L + G+ S +L LT +++ + P ++ + L N
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSIS--N-LTQEQVQDYVNKTNSHLPAGKQVE--ISLVNG 373
Query: 247 RQM----GPDTKVFGI------IGKPVGHSKSPILYNE---AFKSVGFNGVFV----HLL 289
+ GP ++G+ P G +S I ++E F S F V HLL
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF-SNRFLPVASPFHSHLL 432
Query: 290 VDDIAKFFQTYSSND--FAGFSCTIP--HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG 345
V + N+ F IP ++++ I V+CIIR
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI--VDCIIRLPVKW 490
Query: 346 KLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGA 405
+ T A ++ G GG S G L G G
Sbjct: 491 E----TTTQFKATHILDFG-------PGGASGL--GVLTHRNKDG------------TGV 525
Query: 406 RVVIA 410
RV++A
Sbjct: 526 RVIVA 530
Score = 44.3 bits (104), Expect = 1e-04
Identities = 59/409 (14%), Positives = 99/409 (24%), Gaps = 159/409 (38%)
Query: 211 LCAKFGGFLTFGTLENGIVSAPGQPTIKDLLD--LYNFRQM------------------- 249
L KF G+++ +V +L+ L F
Sbjct: 60 LVGKFLGYVSS------LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 250 GPDTKVFGII----------GKPVGHSKSPILYNEAFKSVG-------FNG--------- 283
K +I +P + L+ G F G
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQLVAIFGGQGNTDDYFE 171
Query: 284 ----------VFVHLLVDDIAKFFQTYSSNDFAG---FSCTIP-----HKEAAVKCCDEV 325
V V L+ A+ F+ + + D +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 326 DTVAKS---IG-------AVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGV 375
++ S IG V KL G+ + L+G S G+
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTA--------KLLGFTP------GELRSYLKGATGHSQGL 277
Query: 376 SSALAGKLFVVIGAGG--------AGKALAY----GAKAKGA--RVVIANRTYDRARELA 421
+A+A I KA+ G + A + + + E
Sbjct: 278 VTAVA------IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 422 ETVGGHALSLADL---------ENFN---PEDGMI---LANTT----------------- 449
E V LS+++L N P + L N
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 450 ---SIGMQPKVDETPIP----KHALGHYALVFDAVYTPKITRLLREAEE 491
+D++ IP K + F V +P + LL A +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSN---RFLPVASPFHSHLLVPASD 437
Score = 41.2 bits (96), Expect = 0.001
Identities = 55/318 (17%), Positives = 93/318 (29%), Gaps = 123/318 (38%)
Query: 146 YQYTPSVEDLSNLVARIQASGADIVKFATTALDITDVARVF--QITVHSQVPIIGLVMGE 203
Y+ + + +D+ N AD T I D+ +T+H GE
Sbjct: 1636 YKTSKAAQDVWNR--------ADNHFKDTYGFSILDIVINNPVNLTIHFG--------GE 1679
Query: 204 RGLISRILCAKFGGFLTFGTLENG-IVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGK- 261
+G + + + + F T+ +G + + I + Y FR G++
Sbjct: 1680 KG---KRIRENYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEK----GLLSAT 1729
Query: 262 ----P--VGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHK 315
P K+ E KS G L+ D FAG H
Sbjct: 1730 QFTQPALTLMEKAAF---EDLKSKG-------LIPADAT----------FAG------H- 1762
Query: 316 EAAVKCCDEVDTVAKSIG---AVNCIIRRQSDGKLFGYNTDYVGAISAIEDGL-----RG 367
S+G A+ + +S IE + RG
Sbjct: 1763 ---------------SLGEYAALASL----------------ADVMS-IESLVEVVFYRG 1790
Query: 368 RLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-- 425
+ A+ G YG A V A+ + + + + E VG
Sbjct: 1791 MT-----MQVAVPR------DELGRSN---YGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 426 -GHALSLADLENFNPEDG 442
G + + N+N E+
Sbjct: 1837 TGWLVEIV---NYNVENQ 1851
Score = 37.3 bits (86), Expect = 0.018
Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 52/145 (35%)
Query: 399 GAKAKGARVVIANRTYD-------RARELAETVGGHALSLADLENFNPEDGMILA--NTT 449
G K K R + ++ + ++ + + H+ S F E G++ A T
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY----TFRSEKGLLSATQFT- 1732
Query: 450 SIGMQP----------KV--DETPIPK------HALGHY-ALV-------F-DAVYTPKI 482
QP + + IP H+LG Y AL V ++
Sbjct: 1733 ----QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLV---EV 1785
Query: 483 TR----LLREAEESGATIVSGLEMF 503
++ A S M
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMI 1810
Score = 36.2 bits (83), Expect = 0.037
Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 37/120 (30%)
Query: 17 GGMRKNPTLICVPIMGESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKTLIKES 76
G + NP + E++ +V +GK +G LVEI N+N
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGK--RTG-WLVEI-----VNYN------------ 1847
Query: 77 PVPTLFTYRPIWEGGQY--DGDENERVDVL-RLAMELGADYID-VELQVAREFNDSIRGK 132
V QY GD +D + + + ID +ELQ + + + G
Sbjct: 1848 -VE----------NQQYVAAGD-LRALDTVTNVLNFIKLQKIDIIELQKSLSL-EEVEGH 1894
Score = 35.8 bits (82), Expect = 0.049
Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 40/161 (24%)
Query: 461 PIPKHALGHYALV----FDAVYTPKITRLLREAEESGATIVSGLEMFIGQAYEQYERFTG 516
+P A A F+ + P+ T +E E +F G
Sbjct: 21 LVP-TASFFIASQLQEQFNKIL-PEPTEGFAADDEPTTPA------------ELVGKFLG 66
Query: 517 -LPGKMNAPHLYKFFVLLLYSFNKFHIFTYFLFSFGN----FSAEGTISENHGKVLVWSV 571
+ + + +F +L +F +L GN +A+ + V +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLE--GNDIHALAAKLLQENDTTLVKTKEL 122
Query: 572 WSIHYMLLI-------------LFSSVIQHEASLFIFFFGQ 599
+ I LF +V + A L F GQ
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Score = 30.4 bits (68), Expect = 2.1
Identities = 30/200 (15%), Positives = 49/200 (24%), Gaps = 71/200 (35%)
Query: 19 MRKNPTLICVPIMG-------ESVDKMVVDMGKANASGADLVEIRLDGLKNFNPRENIKT 71
+ NP + + G E+ M+ + + D K N E+ +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFE------TIVDGKLKTEKIFKEIN--EHSTS 1716
Query: 72 LIKESPV----------PTLFT-----YRPIWEGGQYDGDENERVDVLRLAME----LG- 111
S P L + + G D A LG
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD----------ATFAGHSLGE 1766
Query: 112 -------ADYIDVE--LQVAREFNDSIRGKKPEKCKVIVSSHNYQY-----TPS------ 151
AD + +E ++V RG + Y P
Sbjct: 1767 YAALASLADVMSIESLVEVVF-----YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 152 -VEDLSNLVARIQASGADIV 170
E L +V R+ +V
Sbjct: 1822 SQEALQYVVERVGKRTGWLV 1841
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 50.3 bits (121), Expect = 5e-07
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
++ +V GAG G G+AL G +G +V + R Y R ++ +G + +
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIV 55
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 49.2 bits (117), Expect = 2e-06
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
+ G V+G G G ++A A GA+V + R +G ++
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARES-DLLARIAEMGMEPFHISKAAQ 209
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 48.8 bits (117), Expect = 2e-06
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH----ALSLAD 433
A + V+ GA G G A +GA V++A R + A T+ G L L D
Sbjct: 14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQD 73
Query: 434 LE 435
L
Sbjct: 74 LS 75
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 47.6 bits (114), Expect = 5e-06
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
S K+ +V GAG G G+A+A G V +A R D +E A +G AL +
Sbjct: 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVP 80
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 45.5 bits (109), Expect = 2e-05
Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
LAG+ +V GAG G G+ A GARVV +RT L G DL
Sbjct: 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDL 61
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 45.5 bits (108), Expect = 2e-05
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
+ G V+G G G +A A GA V + R+ + E +G +L+
Sbjct: 155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-MGLVPFHTDELKE 211
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 44.6 bits (105), Expect = 3e-05
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD 433
++G+G ++LA G +VV+ +R R L + +
Sbjct: 33 ILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS-AAQVTFQEE 79
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 45.2 bits (106), Expect = 3e-05
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMI 444
+G G + K + I +R+ DRAR LAE GG A +L +
Sbjct: 6 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKH--PELNGVVF 63
Query: 445 LA 446
+
Sbjct: 64 VI 65
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 44.8 bits (107), Expect = 4e-05
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
+G +V GAG G G+ A GA+VV RT LA+ G DL
Sbjct: 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDL 61
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 45.2 bits (106), Expect = 4e-05
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 385 VVIGAGGAGKALA-YGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+++G+G + + A V +A RT A+ LA+ G A+SL D+ + + D +
Sbjct: 27 LLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISL-DVTDDSALDKV 85
Query: 444 ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLRE-AEESGATIVSGLEM 502
+ N I + P + K A+ V + Y R L ++G T+++ + +
Sbjct: 86 LADNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGL 145
Query: 503 FIG 505
G
Sbjct: 146 DPG 148
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 45.3 bits (106), Expect = 4e-05
Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMI 444
+++G+G + G +V +A RT + A++L+ V D+ + D +
Sbjct: 7 LMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEV 66
Query: 445 LANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLRE-AEESGATIVSGLEMF 503
+ I + P + K A+ V Y L + A+++G T+++ + +
Sbjct: 67 AKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLD 126
Query: 504 IG 505
G
Sbjct: 127 PG 128
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 44.2 bits (105), Expect = 5e-05
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
+ G++ VV GA G G+ +A GA V I R D R +A+ GG + +
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVV 60
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 44.1 bits (105), Expect = 6e-05
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
G S +L GK+ ++ GAG G G+ +A GA+VVI +R A +A +G AL++
Sbjct: 1 GPGSMSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAV 60
Query: 432 A 432
A
Sbjct: 61 A 61
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 6e-05
Identities = 77/524 (14%), Positives = 150/524 (28%), Gaps = 162/524 (30%)
Query: 3 SPNLLV----ASG-SKLVSGGMRKNPTLICVPIMGESVDKMV-VDMGKANASGADLVEI- 55
+ N+L+ SG + + + K+ +++ N S ++E+
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKIFWLNLKNCN-SPETVLEML 202
Query: 56 -----RLDGLKNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGDENERVDVLRLAMEL 110
++D N+ R + + IK R + + Y + VL
Sbjct: 203 QKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLLVLL----- 251
Query: 111 GADYIDV-ELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
+V + FN CK+++++ Q T
Sbjct: 252 -----NVQNAKAWNAFN--------LSCKILLTTRFKQVT-------------------- 278
Query: 170 VKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRILCAKFGGFLTFGTLENGIV 229
D A I++ L E + L K+ L+
Sbjct: 279 --------DFLSAATTTHISLDHHSM--TLTPDE----VKSLLLKY--------LDCRPQ 316
Query: 230 SAPGQ-----P--------TIKDLLDLY-NFRQMGPDTKVFGIIGKPVGHSKSPILYNEA 275
P + P +I+D L + N++ + D K+ II + + P Y +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLE-PAEYRKM 374
Query: 276 FKSVGFNGVF---VH----LL-----------VDDIAKFFQTYS--SNDFAGFSCTIP-- 313
F + VF H LL V + YS + +IP
Sbjct: 375 FDRL---SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 314 HKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDG----KLFGYNTDYVGA-ISAIEDGLRGR 368
+ E VK +E + N SD L Y ++G + IE R
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER-- 489
Query: 369 LNVSGGVSSALAGKLFV--------VIGAGGAGKALAYGAKAKGARVVIANRTYDRAREL 420
L +F+ + A+ A + + Y +
Sbjct: 490 --------MTLFRMVFLDFRFLEQKIRHDS-----TAWNASGSILNTLQQLKFYK--PYI 534
Query: 421 AETVGGHALSLADLENF--NPEDGMILANTTSI---GMQPKVDE 459
+ + + + +F E+ +I + T + + + +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578
Score = 44.8 bits (105), Expect = 8e-05
Identities = 39/268 (14%), Positives = 75/268 (27%), Gaps = 66/268 (24%)
Query: 237 IKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPILYNEAFKSVGFNGVFVHLLVDDIAKF 296
KD+ D+ + + ++ II S + L+ S V KF
Sbjct: 35 CKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLF-WTLLSKQEEMV---------QKF 82
Query: 297 FQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAKSIGAVNCIIRRQSDGKLFG-YNTDYV 355
+ ++ F + E + + R +D ++F YN +
Sbjct: 83 VEEVLRINY-KFLMSPIKTEQ-------RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 356 GAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGK-ALAYGAKAKGARVVIANRTY 414
+ L L + V ++ G G+GK +A V +Y
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---------LIDGVLGSGKTWVA-------LDVC---LSY 174
Query: 415 DRARELAETVGGHALSLADLENFNPEDGMILANTTSIGMQPKVDE-------TPIPKHAL 467
++ + L+L +PE + + + P + H++
Sbjct: 175 KVQCKMDFKI--FWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 468 GH----------YA---LVFDAVYTPKI 482
Y LV V K
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKA 258
Score = 36.8 bits (84), Expect = 0.025
Identities = 63/508 (12%), Positives = 134/508 (26%), Gaps = 164/508 (32%)
Query: 38 MVVDMGKANASGADLVEIRLDGL-KNFNPRENIKTLIKESPVPTLFTYRPIWEGGQYDGD 96
M + G+ D++ + D NF+ ++ +++ P + I + D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKD-----VQDMP-------KSILSKEEID-- 52
Query: 97 ENERVDVLRLAMELGADYIDVELQVAREFNDSIRGKKPEKCKVIVSS---HNYQYTPSVE 153
++ D R F ++ K+ E + V NY++
Sbjct: 53 -----HIIMSK--------DAVSGTLRLF-WTLLSKQEEMVQKFVEEVLRINYKF----- 93
Query: 154 DLSNLVARIQASGADIVKFATTALDITDVARVF---QITVHSQVPIIGLVMGERGLISRI 210
L++ I+ T + I R++ Q+ V + +
Sbjct: 94 ----LMSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL--------- 138
Query: 211 LCAKFGGFLTFGTLENGIVSAPGQPTIKDLLDLYNFRQMGPDTKVFGIIGKPVGHSKSPI 270
L L R + + G++G G
Sbjct: 139 ------------KLRQA---------------LLELRP-AKNVLIDGVLG--SG------ 162
Query: 271 LYNEAFKSVGFNGVFVHLLVDDIAKFFQTYSSNDFAGFSCTIPHKEAAVKCCDEVDTVAK 330
K+ + D+ ++ DF F +K C+ +TV +
Sbjct: 163 ------KTW---------VALDVCLSYKVQCKMDFKIFWLN-------LKNCNSPETVLE 200
Query: 331 SIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFV----- 385
+ + + ++++ I +I+ LR L + L V
Sbjct: 201 MLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQ 254
Query: 386 ---VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
A K +++ R L+ H P++
Sbjct: 255 NAKAW------NAFNLSCK-----ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 443 M-ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLRE------------A 489
+L + + +P+ L I +R+
Sbjct: 304 KSLLLKYLDC----RPQD--LPREVLTTNPRRLSI-----IAESIRDGLATWDNWKHVNC 352
Query: 490 EESGATIVSGLEMFIGQAYEQYERFTGL 517
++ I S L + + E + F L
Sbjct: 353 DKLTTIIESSLNVL--EPAEYRKMFDRL 378
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 44.0 bits (105), Expect = 6e-05
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
L GK ++ G+ G G+A A +GA V IA+ +RAR+ A +G A ++
Sbjct: 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQ 60
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 44.1 bits (105), Expect = 7e-05
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
LAGK+ +V GAG G G A+A +G V+ A+ D A A +G A +
Sbjct: 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACR 81
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 43.7 bits (104), Expect = 8e-05
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 372 SGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGH 427
G + L K+ V+ G G G LA +GA +V+A RT +R ++A+ V G
Sbjct: 2 PGSMGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRR 61
Query: 428 ALSLA 432
ALS+
Sbjct: 62 ALSVG 66
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 43.8 bits (104), Expect = 8e-05
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
S VIGAG G +A A+G V R ++ L + GG ++
Sbjct: 2 SLTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVAR 61
Query: 432 A 432
+
Sbjct: 62 S 62
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 42.7 bits (100), Expect = 1e-04
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+ G G GK+L G VV +R + L S A
Sbjct: 24 IFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEA 70
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 43.2 bits (101), Expect = 1e-04
Identities = 12/49 (24%), Positives = 16/49 (32%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
V+G G G+ +A G V I R AE A +
Sbjct: 24 VLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQW 72
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 43.2 bits (101), Expect = 1e-04
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVV-IANRTYDRARELAETVGG-HALSLADL 434
V+IGAG LA KG R+V + +RT + ARELA+ V + LA++
Sbjct: 14 VLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEV 65
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 43.7 bits (103), Expect = 1e-04
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---------- 424
+ LAG + GA G GKA+A A GA +VIA +T +L T+
Sbjct: 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV 99
Query: 425 GGHALSL-ADLENFNPEDGMI 444
GG AL D+ + +
Sbjct: 100 GGKALPCIVDVRDEQQISAAV 120
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 43.3 bits (103), Expect = 1e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
L GK ++ GA G G +A A GAR+V++ R R L E G ++A
Sbjct: 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVA 76
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 43.4 bits (103), Expect = 1e-04
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
GK+ + G G G GK + + GA+ VIA+R D A +++ G ++
Sbjct: 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQ 82
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 42.9 bits (102), Expect = 1e-04
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
G +++ L K+ ++ GA G G + GARVV+A+ A +VG A+
Sbjct: 3 GSMTAELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHH 62
Query: 432 A 432
Sbjct: 63 V 63
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 42.9 bits (101), Expect = 1e-04
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 14/91 (15%)
Query: 348 FGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGAR 406
G NT ++ + ++ GK VV+ G G A +GA
Sbjct: 96 NGSNTTAAAGVALVVKAA----------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAE 145
Query: 407 VVIANRTYDRARELAETV---GGHALSLADL 434
VV+ R D+A+ A++V ++ A+
Sbjct: 146 VVLCGRKLDKAQAAADSVNKRFKVNVTAAET 176
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 43.1 bits (102), Expect = 2e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA 428
G S G+ VV G G G A A +GAR+V+++ + + G A
Sbjct: 23 DGFLSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDA 82
Query: 429 LSLA 432
+
Sbjct: 83 HGVV 86
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 42.5 bits (101), Expect = 2e-04
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
L G V GAG G G + A GAR+++ +R A+ +G
Sbjct: 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA 57
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 42.6 bits (101), Expect = 2e-04
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
L G++ ++ G G G+AL A+GARV + +++ +R REL GG+A+ +
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVV 57
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 43.3 bits (102), Expect = 2e-04
Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 22/124 (17%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRA---RELAETVGGHALSLADLENFNPED 441
++IG G AG + AY +G ++++ D R + G A+S A +
Sbjct: 10 LIIGGGFAGSSAAYQLSRRGLKILLV----DSKPWNRIGDKPCGD-AVSKAHFDKLGMPY 64
Query: 442 GM---ILANTTSIGMQPKVDETPIPKHALGHYAL---VFDAVYTPKITRLLREAEESGAT 495
+ I + +T + G + L +++ R+L+EA++ G
Sbjct: 65 PKGEELENKINGIKLYSPDMQTVWTVNGEG-FELNAPLYNQ-------RVLKEAQDRGVE 116
Query: 496 IVSG 499
I
Sbjct: 117 IWDL 120
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 42.5 bits (101), Expect = 2e-04
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
L ++ +V G G G G+A A GA VV+A+ D A +A +G A +
Sbjct: 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVR 79
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 42.5 bits (101), Expect = 2e-04
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
S+A+ K+ ++ G G GK +A +GARVVI RT ++ E + G L++
Sbjct: 1 SNAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTV 60
Query: 432 A 432
Sbjct: 61 Q 61
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 42.7 bits (101), Expect = 2e-04
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
G +V G AGG G+A A G VVIA+ ++ + LA+ +G A
Sbjct: 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAE 79
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 42.1 bits (100), Expect = 2e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDR----ARELAETVGGHALSL- 431
L G++ +V G G G +A G A+A G VV+A+R + A++L E G ++
Sbjct: 19 LRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFR 77
Query: 432 ADLENFNPEDGMI 444
D+ N+ ++
Sbjct: 78 CDVSNYEEVKKLL 90
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 42.2 bits (100), Expect = 2e-04
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
L K+ VV GA GG G + ++ V R + LAE G +
Sbjct: 3 LKKKIAVVTGATGGMGIEIVK-DLSRDHIVYALGRNPEHLAALAEIEGVEPIES 55
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 42.2 bits (100), Expect = 3e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
L+G+ +V G G G A+A GA V IA+ A+ + + ++
Sbjct: 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVE 64
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 42.4 bits (100), Expect = 3e-04
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
AG+ V G G G L +G +V IA+ D + T+
Sbjct: 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL 52
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 41.8 bits (99), Expect = 3e-04
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
G + + + ++V G G G GK +A G A GA V+I R D+ + +
Sbjct: 3 GSMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQEL 55
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 41.8 bits (99), Expect = 4e-04
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDRARELAETV---GGHALSL-A 432
L+GK ++ GA G GK +A A+A GA+V +A R D + +A+ + GG AL +
Sbjct: 30 LSGKRALITGASTGIGKKVALAYAEA-GAQVAVAARHSDALQVVADEIAGVGGKALPIRC 88
Query: 433 DLENFNPEDGMI 444
D+ + GM+
Sbjct: 89 DVTQPDQVRGML 100
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 41.7 bits (99), Expect = 4e-04
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL--A 432
L ++ +V GA G G+ A GA V++ R ++ R++A + G
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69
Query: 433 DLENFNPEDGMILANTT 449
DL E+ LA
Sbjct: 70 DLLTCTSENCQQLAQRI 86
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 41.3 bits (98), Expect = 4e-04
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
L+GK ++ G G G A A A GARVV+A+ + A +G A
Sbjct: 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAAR 54
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 41.4 bits (98), Expect = 4e-04
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
S+L+G++ VV GA G G A+A + GARVV+ R ++ R + + GG A S A
Sbjct: 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHA 84
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 41.5 bits (98), Expect = 5e-04
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE--------TVGGHAL 429
L G++ +V G G GKA+ G+ VVIA+R +R + A+ T +
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 430 SLA 432
+
Sbjct: 76 PIQ 78
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 41.5 bits (98), Expect = 5e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
+ G + V+ G A G G A A +GA V+ + A+ +G + +
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCV 61
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 41.9 bits (99), Expect = 5e-04
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 26/128 (20%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV--GGHALSLADLENFN--PE 440
+V+G G G A A G + ++ ++ E+ V G LS L + +
Sbjct: 8 LVVGGGPGGSTAARYAAKYGLKTLMI----EKRPEIGSPVRCGE-GLSKGILNEADIKAD 62
Query: 441 DGMILANTTSI------GMQPKVDETPIPKHALGHYAL---VFDAVYTPKITRLLREAEE 491
I +P + ++ + +G Y L FD L A +
Sbjct: 63 RSFIANEVKGARIYGPSEKRPIILQSEKAGNEVG-YVLERDKFDK-------HLAALAAK 114
Query: 492 SGATIVSG 499
+GA +
Sbjct: 115 AGADVWVK 122
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 41.4 bits (98), Expect = 5e-04
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L GK+ +V GA G G+A A +GA+VV+ R + EL + + GG A +LA
Sbjct: 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALA 63
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 41.5 bits (98), Expect = 5e-04
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
L K+ + G G G G +A G VIA+R+ R AR+LA G L L+
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLS 83
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 41.4 bits (98), Expect = 5e-04
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
L K+ V+ GA G G A A A+GARV I R D +GG A+ +
Sbjct: 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQ 81
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 40.9 bits (97), Expect = 6e-04
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLEN 436
L GK+ +V GA G GKA+A +GA+V+ + A+ +++ +G + + ++ N
Sbjct: 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTN 66
Query: 437 FNPEDGMI 444
+ ++
Sbjct: 67 PESIEAVL 74
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 40.7 bits (96), Expect = 7e-04
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
L ++F+V G + G G A+ +GA V+ + E A +G
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVR 56
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 41.5 bits (97), Expect = 7e-04
Identities = 28/133 (21%), Positives = 38/133 (28%), Gaps = 30/133 (22%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS------LADL---- 434
+VIG G G LA +G RV++ +R +G L A L
Sbjct: 11 IVIGGGPGGSTLASFVAMRGHRVLLL----EREAFPRHQIGESLLPATVHGICAMLGLTD 66
Query: 435 ----ENFNPEDGMILANTTSIGMQPKVDETPIPKHALGH-YAL---VFDAVYTPKITRLL 486
F + G T P G Y + FD LL
Sbjct: 67 EMKRAGFPIKRGGTFRWGKEPEPWT-FGFTRHPDDPYGFAYQVERARFDD-------MLL 118
Query: 487 REAEESGATIVSG 499
R +E G +
Sbjct: 119 RNSERKGVDVRER 131
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 40.6 bits (96), Expect = 8e-04
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-AD 433
+ LAGK +V GA G GKA+A A GA V++++ + A+ A ++G A ++ AD
Sbjct: 1 TERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAAD 60
Query: 434 LENFNPEDGMI 444
+ + +
Sbjct: 61 ISDPGSVKALF 71
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 40.6 bits (96), Expect = 8e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV--GGHALSL-ADL 434
LAG++ +V G G G+ +A G GARV I R + + A + G ++ ADL
Sbjct: 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADL 86
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 40.7 bits (96), Expect = 8e-04
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA- 432
L GK +V GA G G+ +AY GA VV+ R+ + E A +A
Sbjct: 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAG 85
Query: 433 DLEN 436
+E+
Sbjct: 86 TMED 89
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 40.5 bits (96), Expect = 9e-04
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDRARELAETV---GGHALSL-A 432
L GK +V G+ G G A A G A A GARV++ + E +T+ G A +
Sbjct: 7 LTGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKGYDAHGVAF 65
Query: 433 DL 434
D+
Sbjct: 66 DV 67
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 40.4 bits (95), Expect = 0.001
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYG---AKAKGARVVIANRTYDRARELAETVGGHA 428
+ L + V+ GA G G+ALA + G+ ++++ R+ R+L E +G
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQ 57
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 40.2 bits (95), Expect = 0.001
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 373 GGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHA 428
G S K+ +V G+G G G+A A +GA VV+A+ + A +A+ + GG A
Sbjct: 1 GPGSMRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTA 60
Query: 429 LSLA 432
+S+A
Sbjct: 61 ISVA 64
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 40.2 bits (95), Expect = 0.001
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 379 LAGKLFVVI---GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
L GK V + GA G G + +GA+V ++ ++LA +G ++
Sbjct: 4 LQGK--VALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSM 55
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 40.3 bits (95), Expect = 0.001
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
+ ++ GAG G G+A A A G V RT E+A+ + GG A++L
Sbjct: 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALE 83
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 40.2 bits (95), Expect = 0.001
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
L GK+ +V G G G + A+GA+VV + + + +A + A
Sbjct: 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAAR 56
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 39.8 bits (94), Expect = 0.001
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA-- 432
L G++ +V GA G G A A A GA VV+ RT E+++ + G +
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71
Query: 433 DLENFNPEDGMILANTT 449
+LEN + LA
Sbjct: 72 NLENATAQQYRELAARV 88
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 39.5 bits (93), Expect = 0.001
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 385 VVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
++ GA GG G A A KG ++++ R ELA VG AL ADL
Sbjct: 4 LITGATGGLGGAFA--RALKGHDLLLSGRRAGALAELAREVGARALP-ADL 51
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 39.9 bits (94), Expect = 0.001
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----------GGH 427
L+GK + GA G G A+A A GA V IA ++ +L T+ GG
Sbjct: 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQ 63
Query: 428 ALSLA 432
L+L
Sbjct: 64 GLALK 68
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 39.9 bits (94), Expect = 0.001
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHALSLA 432
G++ +V G G G G+ +A A+G VVI R D A + G ++
Sbjct: 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVV 89
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 40.0 bits (94), Expect = 0.001
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----------GGH 427
L GK + G G G A+A A GA V + ++ + +L T+ GG
Sbjct: 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQ 66
Query: 428 ALSLA 432
AL +
Sbjct: 67 ALPIV 71
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 39.8 bits (94), Expect = 0.002
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L GK ++ GAG G GK +A GA VV+++ D A + + + GG A +
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACR 66
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
GK +VIG G G A GA V++ R + E G +L
Sbjct: 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALR 60
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 39.4 bits (93), Expect = 0.002
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L K+ +V GAG G G+A+A + VV DR ++ + + G L +
Sbjct: 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVK 62
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 39.5 bits (93), Expect = 0.002
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALS 430
+ G++ ++ GAG G G+ AY +++V+ + E A G +
Sbjct: 29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHT 84
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 39.4 bits (93), Expect = 0.002
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLEN 436
L+GK +V GA G G+A +GA +V +R E + A+++ AD+ +
Sbjct: 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSD 63
Query: 437 FNPEDGMI 444
+ +
Sbjct: 64 PKAVEAVF 71
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L ++ +V G G A GARV+IA+ A + E + G S+
Sbjct: 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVV 68
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSL-A 432
++GK+ V+ G+ G G A+A G +GA +V+ R DR AR L E G L +
Sbjct: 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAV 64
Query: 433 DL 434
D+
Sbjct: 65 DV 66
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 39.1 bits (92), Expect = 0.002
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLEN 436
L G+ +V GA GG G+A+A A+GA V + D+ +E+A +G A+L +
Sbjct: 25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSD 84
Query: 437 FNPEDGMI 444
+
Sbjct: 85 RKSIKQLA 92
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 39.5 bits (93), Expect = 0.003
Identities = 19/49 (38%), Positives = 20/49 (40%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
G VVIG GG G +A A VIA D LA VG A
Sbjct: 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADA 219
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 39.3 bits (92), Expect = 0.003
Identities = 13/64 (20%), Positives = 21/64 (32%)
Query: 365 LRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
++ R+ V L + +V+G G G + G V +ANR E
Sbjct: 165 VQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIE 224
Query: 425 GGHA 428
Sbjct: 225 ETKT 228
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 39.0 bits (92), Expect = 0.003
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
+IG G A+ G K ++I+ + +R++E+AE +
Sbjct: 8 IIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY 50
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 38.7 bits (91), Expect = 0.003
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
S L ++ GA G G +A G G RVV+ R+ ++ +
Sbjct: 2 SLEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHD 49
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 38.7 bits (91), Expect = 0.003
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
SAL GK+ ++ GA G G+A A A+GA V IA R ++ R L + + G L
Sbjct: 2 PSALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVL 61
Query: 432 A 432
Sbjct: 62 E 62
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 38.3 bits (90), Expect = 0.004
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLA 432
K+ V+ GA G G+A+A G + + R+ DR A EL + G
Sbjct: 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHH 58
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 39.0 bits (91), Expect = 0.004
Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 38/165 (23%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-------HALSLADL--- 434
+VIGAG AG A G +V I ++ + +G L A
Sbjct: 9 LVIGAGPAGTVAASLVNKSGFKVKIV----EKQKFPRFVIGESLLPRCMEHLDEAGFLDA 64
Query: 435 ---ENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALV-----FDAVYTPKITRLL 486
+ F + G I D+ ++ FD L
Sbjct: 65 VKAQGFQQKFGAKFVRGKEIADFNFSDQFSNG----WNWTWQVPRGNFDK-------TLA 113
Query: 487 REAEESGATI-----VSGLEMFIGQAYEQYERFTGLPGKMNAPHL 526
EA G + V+ ++ F + E G ++ A +
Sbjct: 114 DEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFI 158
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 36.7 bits (85), Expect = 0.004
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 7/111 (6%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
V+GAG G+ +A + V +A+ L G A D ++
Sbjct: 9 CVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAKDEAGLAKA 66
Query: 444 ILANTTSIGMQPKVDETPIPKHALG---HYA-LVFDAVYTPKITRLLREAE 490
+ I P I K A HY L D T + L+ +++
Sbjct: 67 LGGFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTEDVAATNAVRALVEDSQ 117
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 38.3 bits (90), Expect = 0.004
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
AGK+ VV G G G G + GARVVI ++ R L + + G
Sbjct: 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG 55
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 38.3 bits (90), Expect = 0.004
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-----GGHALSLA 432
L+ + VV G G G A GA V R +R R + G +
Sbjct: 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASV 65
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 38.3 bits (90), Expect = 0.004
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
L K ++ GA G G+A +GAR+V + RE AE VG H + D+ +
Sbjct: 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVV-MDVADP 61
Query: 438 NPEDGMI 444
+
Sbjct: 62 ASVERGF 68
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 38.1 bits (89), Expect = 0.004
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 376 SSALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
+++ + +V G GA G +A+ V + E A ++ +
Sbjct: 2 AASGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDV---VENEEASASVIVKMTDSFT 58
Query: 435 E 435
E
Sbjct: 59 E 59
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 38.3 bits (90), Expect = 0.005
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L + +V GA G G+A+A GA VV+ + + A +A + GG A+ L
Sbjct: 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLE 67
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 38.6 bits (91), Expect = 0.005
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
GGV + VVIGAG AG A A GA V + + D+ R+L G
Sbjct: 161 GGVPGVEPADV-VVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGR 214
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 38.6 bits (91), Expect = 0.005
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
GGV + V++G G G A A GA+V I + + R + L + GG
Sbjct: 159 GGVPGVAPASV-VILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR 212
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 38.6 bits (91), Expect = 0.005
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 373 GGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
GGV GK+ V++G G G A A GA+V I + +R L G
Sbjct: 160 GGVPGVKPGKV-VILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR 213
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 38.4 bits (90), Expect = 0.005
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDRARELAETV---GGHALSL-A 432
L GK+ +V GA G G A+A AKA GA +V + + G +A
Sbjct: 32 LKGKIALVTGASYGIGFAIASAYAKA-GATIVFNDINQELVDRGMAAYKAAGINAHGYVC 90
Query: 433 DLENFNPEDGMI 444
D+ + + M+
Sbjct: 91 DVTDEDGIQAMV 102
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 38.7 bits (89), Expect = 0.005
Identities = 27/117 (23%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Query: 385 VVIGAGGAGKALAYGAKAKGARV-VIANRTYDRARE--LAETVGGHALSLADLENFNPED 441
++GAG AG L + V V +R D L TV +A+++ E +
Sbjct: 26 GIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQ-REVALDVN 84
Query: 442 GMILANTTSIGMQPKVDETPIPKHALGHYALVFDAV-YTPKITRLLREAEESGATIV 497
G V P P G AV Y L+R E G
Sbjct: 85 EWPSEEFGYFGHYYYVGG-PQPMRFYGDLKAPSRAVDYRLYQPMLMRALEARGGKFC 140
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 37.9 bits (89), Expect = 0.005
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLEN 436
L GK ++ GA G G A+A G++V+I+ ++ + L + + +L N
Sbjct: 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLAN 71
Query: 437 FNPEDGMI 444
+I
Sbjct: 72 KEECSNLI 79
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 38.6 bits (90), Expect = 0.006
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
V+IG+GGAG A A A+ GA+V++
Sbjct: 130 VIIGSGGAGLAAAVSARDAGAKVIL 154
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 38.5 bits (90), Expect = 0.006
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
VV G G AG A + A GA V++ E GG
Sbjct: 45 VVAGYGIAGVAASIEAARAGADVLVL--------ERTSGWGG 78
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 37.9 bits (89), Expect = 0.006
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L K+ +V + G G A+A GA VV+++R + T+ G
Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTV 69
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 37.5 bits (88), Expect = 0.007
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
GK+ +V GAG G A A +G + + + + + +V G A S
Sbjct: 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYV 62
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 38.4 bits (90), Expect = 0.007
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+AGK V G G GK A + GARVV+
Sbjct: 209 IAGKTACVCGYGDVGKGCAAALRGFGARVVV 239
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 37.9 bits (89), Expect = 0.007
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRT--YDRARELAETVGGHALSL-AD 433
LAG+ VV GAG G G+A+A+G A+A GA V+ RT + GG A ++ AD
Sbjct: 29 LAGRTAVVTGAGSGIGRAIAHGYARA-GAHVLAWGRTDGVKEVADEIADGGGSAEAVVAD 87
Query: 434 L 434
L
Sbjct: 88 L 88
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 38.0 bits (88), Expect = 0.007
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMI 444
+++GAG G+A+A+ V I + + ++ E + ++ + ++
Sbjct: 20 LILGAGNIGRAIAWDL-KDEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKL---VEVM 75
Query: 445 LANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLRE-AEESGATIVSGLEMF 503
IG P K A+ + D + P+ LR+ AE++ TIV
Sbjct: 76 KEFELVIGALPGFLGFKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFA 135
Query: 504 IG 505
G
Sbjct: 136 PG 137
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 37.5 bits (88), Expect = 0.007
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL 431
L GK+ ++ A G G+A A +GA+V+ + + +EL + G L
Sbjct: 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVL 57
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 37.5 bits (88), Expect = 0.007
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 369 LNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
+ + ++ ++ ++ G G G G+A A A+GA++ + + + + V
Sbjct: 1 MTATSSPTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET 60
Query: 428 A 428
A
Sbjct: 61 A 61
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 37.5 bits (88), Expect = 0.009
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR---ARELAETVGGHALSLA 432
L GK+ V G+ G G A+A GA V I ++ A L +T G H+ +
Sbjct: 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYK 89
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 37.1 bits (85), Expect = 0.009
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 386 VIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
++G G GK LA G +V+ +R ++A A A
Sbjct: 5 LLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 37.6 bits (88), Expect = 0.009
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
G ++G GG G K VIA + +LAE +G
Sbjct: 186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH 234
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 37.7 bits (87), Expect = 0.010
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 22/132 (16%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGMIL 445
V+G G G A A KG V+ + R +E+ + G L
Sbjct: 9 VLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR-GAIIAEGPGLAGTAH----PD 63
Query: 446 ANTTSIGMQPKVDETPIPKHALGHYALVFDAV---YTPKITRLLREAEESGATIV--SGL 500
T+ I A+ ++ V + I + G I+ G
Sbjct: 64 LLTSDI------------GLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGA 111
Query: 501 EMFIGQAYEQYE 512
+ +
Sbjct: 112 TGGALEFRKILR 123
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 37.2 bits (87), Expect = 0.010
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVI--ANRTYDRARELAETVGGHALSLA 432
GK+ +V G G GK++ + V+ R+ ++L E G +
Sbjct: 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVV 56
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 37.6 bits (88), Expect = 0.010
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 366 RGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
R +S L G+ ++ G G G++LA A A G V+ N T A ETV
Sbjct: 122 GARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVA 181
Query: 426 ----GHALSLAD 433
AL+ A+
Sbjct: 182 FTATADALATAN 193
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 37.6 bits (88), Expect = 0.010
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
GK VV G G GK KA G+ V +
Sbjct: 218 FGGKQVVVCGYGEVGKGCCAALKAMGSIVYV 248
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 37.2 bits (87), Expect = 0.012
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
+ ++GK ++ GAG G AKA GA VI + D RELA+ VG
Sbjct: 163 AGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212
>2i99_A MU-crystallin homolog; thyroid hormine binding protein,
oxidoreductase; HET: NDP; 2.60A {Homo sapiens}
Length = 312
Score = 36.9 bits (86), Expect = 0.013
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 377 SALAGKLF--------VVIGAGGAGK--ALAYGAKAKGARVVIANRTYDRARELAETVGG 426
SA+A K ++GAG + + V I NRT + A + A+TV G
Sbjct: 123 SAIATKFLKPPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG 182
Query: 427 HALSLADLE 435
+ ++
Sbjct: 183 EVRVCSSVQ 191
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 37.3 bits (87), Expect = 0.014
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+AGK+ VV G G GK A GARV +
Sbjct: 245 MAGKVAVVCGYGDVGKGSAQSLAGAGARVKV 275
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 37.1 bits (87), Expect = 0.015
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L G V G G KAL +GA++V+ + G A++ +
Sbjct: 171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI 226
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 36.7 bits (86), Expect = 0.015
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
L GK+ ++ G G G A+A +GA+V+I R D + A++VG
Sbjct: 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT 52
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 36.7 bits (86), Expect = 0.015
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDRARELAETV---GGHALSL-A 432
L G +V G G G + A GA V +R + G +
Sbjct: 7 LEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVC 65
Query: 433 DLENFNPEDGMI 444
DL + + ++
Sbjct: 66 DLSSRSERQELM 77
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 36.5 bits (85), Expect = 0.017
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 379 LAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETV 424
K +V+G GA G + K+K + + + + + T+
Sbjct: 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTI 66
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 37.0 bits (86), Expect = 0.017
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VV+G+GGAG + A A GA+V++
Sbjct: 130 VVVGSGGAGFSAAISATDSGAKVIL 154
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 37.0 bits (86), Expect = 0.019
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+V+GAG AG + AK GA V++
Sbjct: 125 LVVGAGSAGFNASLAAKKAGANVIL 149
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 36.8 bits (86), Expect = 0.020
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
V+ GAG G A++ GA VI +LAE +G
Sbjct: 200 VIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 240
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 36.4 bits (85), Expect = 0.020
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-----GGHALSL- 431
+ GKL VV G G A A GAR+++ +R ++ A + G +
Sbjct: 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVA 64
Query: 432 ADL 434
D+
Sbjct: 65 GDI 67
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 37.0 bits (86), Expect = 0.020
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 375 VSSALAGKLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
+ +L V+ G G GK A+A A++ G V + T AR L E G A
Sbjct: 198 LDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTAS 257
Query: 430 SLADLENFNPED 441
++ L + P+
Sbjct: 258 TVHRLLGYGPQG 269
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 36.1 bits (84), Expect = 0.020
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
++ +V G GA G A+ K G V+ A + A++ + E
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNI---DLSANDQADSNILVDGNKNWTE 55
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 36.5 bits (85), Expect = 0.020
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+VIGAG G + A K G + Y+ +E+ VG A+S+
Sbjct: 27 IVIGAGIGGLSAAVALKQSGIDCDV----YEAVKEIKP-VGA-AISVW 68
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 36.0 bits (84), Expect = 0.023
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
+ K+ ++ GA GG G+ +A GA++++ R R +A + GG AL+
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQV 59
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 36.3 bits (83), Expect = 0.023
Identities = 24/117 (20%), Positives = 36/117 (30%), Gaps = 20/117 (17%)
Query: 385 VVIGAGGAGKALAY--GAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
V++GAG G + AY R+ I E GG A L +
Sbjct: 83 VIVGAGSCGLSAAYVLSTLRPDLRITIV--------EAGVAPGGGAWLGGQLFS------ 128
Query: 443 MILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSG 499
A +DE +P G Y +V A T L + + + +
Sbjct: 129 ---AMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTS-TVLSKVLQRPNVKLFNA 181
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 36.0 bits (84), Expect = 0.024
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-----GGHALSLA 432
+ GK+ +V GA G G+A A KGA+V + + + + + L +
Sbjct: 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ 64
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 36.5 bits (85), Expect = 0.024
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
V G G AG A K G V + ++++ EL G + L
Sbjct: 15 EVAGGGFAGLTAAIALKQNGWDVRL----HEKSSELRAF--GAGIYLW 56
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 36.0 bits (84), Expect = 0.024
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 379 LAGKLFVVIGAG-GAGKALAYG-AKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
L G +V G G G A+ A GARV +R E E G +
Sbjct: 19 LKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSV 76
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 36.1 bits (84), Expect = 0.025
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 368 RLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR-----ARELA 421
L ++ K V+ G+ G G A+A GA +V+ E+A
Sbjct: 12 DLGTENLYFQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVA 71
Query: 422 ETVGGHALSL-ADLENFNPEDGMI 444
G L AD+ + M+
Sbjct: 72 GLSSGTVLHHPADMTKPSEIADMM 95
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 36.3 bits (84), Expect = 0.026
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV--------GGH 427
+A + +V GA G+++A G A+G V + Y R+ A +
Sbjct: 42 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCL---HYHRSAAEANALSATLNARRPNS 98
Query: 428 ALSL-ADLENFNPEDGMILANTTSIGMQPKVDE 459
A+++ ADL N + + + + E
Sbjct: 99 AITVQADLSNVATAPVSGADGSAPVTLFTRCAE 131
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 36.0 bits (84), Expect = 0.026
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGH 427
S + +V G G G A+ A +G RV + Y RE A+ V GG
Sbjct: 21 QSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGV---NYAANREAADAVVAAITESGGE 77
Query: 428 ALSL-AD 433
A+++ D
Sbjct: 78 AVAIPGD 84
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 36.0 bits (84), Expect = 0.029
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-AD 433
K+ +V GA G G+ +A + V+ +RT + + + G + D
Sbjct: 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGD 101
Query: 434 LENFNPEDGMI 444
+ +I
Sbjct: 102 VSKKEEISEVI 112
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 35.6 bits (83), Expect = 0.029
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
L GK +V G+ G GKA+A A+GA V+I R + E +
Sbjct: 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIK 52
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 35.6 bits (83), Expect = 0.031
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 379 LAGKLFVVIGAGGA--GKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
L GK+ +V A G G A A +GA VVI++ R E + + L
Sbjct: 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRV 75
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 36.1 bits (83), Expect = 0.031
Identities = 24/133 (18%), Positives = 35/133 (26%), Gaps = 29/133 (21%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG-------GHALSLADL--- 434
+IG G AG G V I +R+ VG L+ L
Sbjct: 27 AIIGGGPAGSVAGLTLHKLGHDVTIY----ERSAFPRYRVGESLLPGTMSILNRLGLQEK 82
Query: 435 ---ENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALV-----FDAVYTPKITRLL 486
+N+ + P + +A+ FD LL
Sbjct: 83 IDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDK-------LLL 135
Query: 487 REAEESGATIVSG 499
EA G T+
Sbjct: 136 DEARSRGITVHEE 148
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 35.6 bits (83), Expect = 0.031
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 382 KLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDR----ARELAETVGGHALSLADLE 435
L V+ GA G G LA A+G + R+ + L+ VG A LA +
Sbjct: 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQ 60
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 36.0 bits (84), Expect = 0.031
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
FV GAG G + AK GA ++IA + ELA+ +G
Sbjct: 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG 235
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 36.1 bits (84), Expect = 0.031
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
+ G +VIGAG G AKA GA VV R+ R E+A+ G + D
Sbjct: 164 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS-PRRLEVAKNCGADVTLVVDPA 222
Query: 436 NFNPED 441
Sbjct: 223 KEEESS 228
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 36.0 bits (82), Expect = 0.032
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 13/118 (11%)
Query: 385 VVIGAGGAGKALA-YGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
V G G L+ A G V + D A + +G L N +DG
Sbjct: 6 CVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADEL----TVIVNEKDGT 61
Query: 444 ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAE---ESGATIVS 498
+ + T P+ A+ +V V + + A IV
Sbjct: 62 QTEVKSRPKVI-----TKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVG 114
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 35.5 bits (83), Expect = 0.034
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
AGK +V G G G+A+A +GA V + + +E+AE +GG
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAIGGAFF 54
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 35.8 bits (83), Expect = 0.035
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
V G V++G G G A K GA VI + + R LA+ +G
Sbjct: 204 VIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELG 258
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 35.3 bits (82), Expect = 0.038
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 372 SGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGH 427
G + ++ +V GA G G +A +G RV + R + R + + G
Sbjct: 13 RGSHMATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE 72
Query: 428 ALSL-ADLENFNPEDGMI 444
A D+ + + ++
Sbjct: 73 ADGRTCDVRSVPEIEALV 90
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 35.4 bits (81), Expect = 0.038
Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 17 GGMRKNPTLICVPIMGESVDKMV--VDM-GKANASGADLVEIRLDGLKNFNPRENIKTLI 73
G M +P I + G + + +GA VE+R + E + I
Sbjct: 1 GHMSLHPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAI 60
Query: 74 KESPVPTLF-TYRPIWEGGQYDGDENERV-DVLRLAMELGADYIDVEL------QVAREF 125
+ + +F + +W DG N + LR A GA ++ V L
Sbjct: 61 QLQGLECVFSSPLELWRE---DGQLNPELEPTLRRAEACGAGWLKVSLGLLPEQPDLAAL 117
Query: 126 NDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGADI 169
+ +++V + +E L + D+
Sbjct: 118 GRRLARHGL---QLLVENDQTPQGGRIEVLERFFRLAERQQLDL 158
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 35.7 bits (83), Expect = 0.039
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 28/133 (21%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF------- 437
++ G G G LAY +G RVV+ ++AR G L A +
Sbjct: 10 LINGCGIGGAMLAYLLGRQGHRVVVV----EQARRERAINGADLLKPAGIRVVEAAGLLA 65
Query: 438 -------NPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLRE-- 488
+ + + + + + + L+ + RL+ E
Sbjct: 66 EVTRRGGRVRHELEVYHDGELLRY--FNYSSVDARGYFI--LMPCES----LRRLVLEKI 117
Query: 489 AEESGATIVSGLE 501
E+ ++
Sbjct: 118 DGEATVEMLFETR 130
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 35.3 bits (82), Expect = 0.039
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
S + V G G G A+A A+G V R + + G
Sbjct: 19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGS 78
Query: 432 A 432
+
Sbjct: 79 S 79
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 35.2 bits (82), Expect = 0.040
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 385 VVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+V GA G G+ + +G +V+ R +R +EL + +G +
Sbjct: 4 LVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQ 52
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 35.4 bits (82), Expect = 0.041
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV--------GGH 427
+A + +V GA G+++A G A+G V + Y R+ A +
Sbjct: 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCL---HYHRSAAEANALSATLNARRPNS 61
Query: 428 ALSL-ADLENFNPEDGMILANTTSIGMQPKVDE 459
A+++ ADL N + + + + E
Sbjct: 62 AITVQADLSNVATAPVSGADGSAPVTLFTRCAE 94
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 35.6 bits (83), Expect = 0.042
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIAN-----RTYDRARELAETVGGHALSLAD 433
GK V+IG G G + A+G + + D+ E E G L+
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGS-LNDEW 61
Query: 434 LENF 437
L
Sbjct: 62 LMAA 65
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 35.2 bits (82), Expect = 0.042
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
++ GA G G+A A AKG RV + R R + LA + G
Sbjct: 5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEG 51
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 35.2 bits (82), Expect = 0.044
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGHALS 430
+ VV GAG G+A A +GA VV+ TY+ A E A T G AL+
Sbjct: 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVL---TYNGAAEGAATAVAEIEKLGRSALA 62
Query: 431 L-AD 433
+ AD
Sbjct: 63 IKAD 66
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 35.1 bits (82), Expect = 0.046
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 385 VVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
+V G G G+A+A A+G RV IA+R E A+++G L DL
Sbjct: 6 LVTGGSRGIGRAIAEALVARGYRVAIASR---NPEEAAQSLGAVPLP-TDL 52
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 35.5 bits (82), Expect = 0.047
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+IG G G +A + G V + Y+R + + G L L
Sbjct: 30 AIIGGGPVGLTMAKLLQQNGIDVSV----YERDNDREARIFGGTLDLH 73
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 35.2 bits (82), Expect = 0.048
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 12/68 (17%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGH 427
S +LAGK V G G G A+A +GA V + TY A E A+ V GG
Sbjct: 26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVAL---TYVNAAERAQAVVSEIEQAGGR 82
Query: 428 ALSL-ADL 434
A+++ AD
Sbjct: 83 AVAIRADN 90
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 35.3 bits (82), Expect = 0.048
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
KL V+ GA G G+A+A +G +++ R +R + L + L
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN---LPNTLCAQ 65
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 35.2 bits (82), Expect = 0.049
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-AD 433
L ++ +V GA G G+A+A +GA V+ T A + G +
Sbjct: 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLN 85
Query: 434 LENFNPEDGMI 444
+ + D ++
Sbjct: 86 VNDATAVDALV 96
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 35.1 bits (80), Expect = 0.053
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
VV+GAG AG + AY +K +V I E + + GG A L +
Sbjct: 43 VVVGAGSAGLSAAYEISKNPNVQVAII--------EQSVSPGGGAWLGGQLFS------- 87
Query: 444 ILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSG 499
A +DE + Y +V A T + + + +
Sbjct: 88 --AMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTS-TIMSKLLARPNVKLFNA 140
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 35.3 bits (81), Expect = 0.053
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 24/138 (17%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAET--------VGG 426
++ + VV G G G + + G VV+ R + E E V
Sbjct: 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVF 66
Query: 427 HALSLADL------------ENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVF 474
H L + D +F D IL N + VD
Sbjct: 67 HQLDVTDPIATMSSLADFIKTHFGKLD--ILVNNAGV-AGFSVDADRFKAMISDIGEDSE 123
Query: 475 DAVYTPKITRLLREAEES 492
+ V + E+
Sbjct: 124 ELVKIYEKPEAQELMSET 141
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 35.4 bits (82), Expect = 0.054
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 386 VIGAGGAGK--ALAYGAKAKGARVV-IANRTYDRARELAETVGGHALSLADLE 435
VIG G GK K GA +V + + + A+++ E +A + +
Sbjct: 7 VIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDD 59
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 34.8 bits (81), Expect = 0.054
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
+ L L +V GAG G G+A++ +GA V + A+E +GG
Sbjct: 2 QNRLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGG 53
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 34.8 bits (81), Expect = 0.054
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
K+ +V G G G A+ GA+VV + +++
Sbjct: 12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF 58
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 35.4 bits (82), Expect = 0.054
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 386 VIGAGGAGK--ALAYGAKAKGARVV-IANRTYDRARELAETVGGHALSLADLE 435
++G G G G VV + + RA+ + A D
Sbjct: 28 IVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYH 80
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 34.9 bits (81), Expect = 0.057
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 376 SSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG--GHALSLA 432
+ + GA G G+A A G +V+ R +R + LA + L L
Sbjct: 16 RGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLT 75
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 34.8 bits (81), Expect = 0.057
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
+ K +V+ A G G+A+A +GA V I R + + H + DL
Sbjct: 17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSG-----HRYVVCDLRK 70
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 34.9 bits (81), Expect = 0.061
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
V G GG G ++ G KA GA +I A+ VG
Sbjct: 196 AVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 236
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 34.8 bits (81), Expect = 0.064
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 379 LAGKLFVVI---GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
L K V I GAGG G+ A GA+VVIA+ D +++ +G
Sbjct: 14 LQDK--VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP 63
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 34.8 bits (81), Expect = 0.064
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL-AD 433
L K+ +V GA G G +A+ +KGA VV + A + ++ G A L +
Sbjct: 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLN 62
Query: 434 LENFNPEDGMI 444
+ +
Sbjct: 63 ISDIESIQNFF 73
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 34.8 bits (81), Expect = 0.066
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 379 LAGKLFVVIGAGGA---GKALAYGAKAKGARVVIANRTY-----DRARELAETVGGHALS 430
L GK+ VV GA G G A G GA V I + + +EL +T G A +
Sbjct: 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKA 77
Query: 431 LA 432
Sbjct: 78 YK 79
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 34.9 bits (81), Expect = 0.068
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
V G GG G + G KA GA +I T+ A +G
Sbjct: 196 AVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG 236
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 34.5 bits (80), Expect = 0.069
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 379 LAGKLFVVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
+ + VV G A G G A GA+VV+ + R ++ +G A
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDI---RGEDVVADLGDRAR 55
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 34.8 bits (81), Expect = 0.072
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
VIG+GGA A A A +GA+V + R T+GG
Sbjct: 8 AVIGSGGAAMAAALKAVEQGAQVTLIER---------GTIGG 40
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 34.5 bits (80), Expect = 0.074
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYD----RARELAETVGGHALSL-A 432
K +V G G G A A GA V + R+ ++ + G +
Sbjct: 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQC 71
Query: 433 DLENFNPEDGMI 444
D+ N + I
Sbjct: 72 DVSNTDIVTKTI 83
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 34.4 bits (80), Expect = 0.076
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
+GK V GAG G G A A GA+V + + +AD
Sbjct: 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTG---FDQAFTQEQYPFATEVMDVADAA 59
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 34.9 bits (81), Expect = 0.077
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 371 VSGGVSSAL------AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
+S G +A+ G + V G GG G A+ G K GA +I A+
Sbjct: 175 ISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF 234
Query: 425 G 425
G
Sbjct: 235 G 235
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 34.5 bits (80), Expect = 0.086
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 371 VSGGVSSAL------AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
S G +A+ G V G G G + G K GA +IA A+ +
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 425 G 425
G
Sbjct: 240 G 240
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 34.0 bits (79), Expect = 0.090
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 385 VVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLA 432
+V GAG G GKA+A G V IA+ A+ +A + GGHA+++
Sbjct: 6 LVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVK 57
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 34.1 bits (79), Expect = 0.095
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRAR----ELAETVGGHALSL-A 432
L G+ VV G G G+ +A GA V +A R+ +L + G + +
Sbjct: 8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQT 67
Query: 433 DLENFNPEDGMI 444
D+ + D +
Sbjct: 68 DVSDRAQCDALA 79
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol,
oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Length = 332
Score = 34.2 bits (79), Expect = 0.098
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 386 VIGAGGAGKALAYGA-KAKGARVV-IANRTYDRARELAETVG 425
+IGA + GA +A G VV + + + +R A G
Sbjct: 5 LIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENG 46
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 34.1 bits (79), Expect = 0.100
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
+L +V GA GG G A+A +G +VV RT ELA
Sbjct: 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA 74
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 34.1 bits (79), Expect = 0.11
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHALSLA 432
L GK ++ G+ G G A A GA+V + + E ++ GG A A
Sbjct: 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFA 63
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 34.1 bits (79), Expect = 0.11
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV------GGHALSL 431
+ K ++ G+ G G+ A +GA V I R+ +R E + + S+
Sbjct: 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 63
Query: 432 -ADLENFNPEDGMI 444
AD+ + +D +I
Sbjct: 64 VADVTTEDGQDQII 77
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 33.6 bits (78), Expect = 0.12
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV----GGHALSLA 432
++ +V GA G G A+A A+G RV + + + E A T L +
Sbjct: 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVR 58
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 34.2 bits (79), Expect = 0.13
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
V G G G A G + GA+ +IA E A+ G
Sbjct: 197 AVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG 237
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 33.7 bits (78), Expect = 0.13
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDR-----ARELAETVGGHALSL- 431
L GK+ VV G+ G G +A A+GA +V+ LA G L
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 432 ADLENFNPEDGMI 444
ADL G++
Sbjct: 62 ADLSKGEAVRGLV 74
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 33.3 bits (77), Expect = 0.15
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET-----VGGHALSLADLENFNP 439
++IG LA ++ VVI N+ + E A+ + G L +
Sbjct: 4 IIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEV 63
Query: 440 ED 441
Sbjct: 64 SK 65
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 33.6 bits (78), Expect = 0.15
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHAL-SLAD 433
L K +V G G G A+ GA + R E G S+ D
Sbjct: 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCD 71
Query: 434 LENFNPEDGMI 444
+ ++
Sbjct: 72 ASLRPEREKLM 82
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 33.7 bits (78), Expect = 0.15
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
+GK ++ G+ G G++ A +GA+V I R DR E + +
Sbjct: 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI 70
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 34.0 bits (77), Expect = 0.15
Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 16/125 (12%)
Query: 385 VVIGAGGAGKALAYGAK--AKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
+VIGAG AG A K + I ++ E G + L +P +
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDI----VEKNDEQEV--LGWGVVLPGRPGQHPANP 57
Query: 443 MILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITR------LLREAEESGATI 496
+ + P+ E H + + + R L + G I
Sbjct: 58 LSYL-DAPERLNPQFLEDFKLVHHNEPSLMSTGVLLCG-VERRGLVHALRDKCRSQGIAI 115
Query: 497 VSGLE 501
Sbjct: 116 RFESP 120
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 33.8 bits (78), Expect = 0.16
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 386 VIGAGGAGK--ALAYGAKAKGARVV-IANRTYDRARELAETVGGHA 428
+IG G G+ A K +G ++V ++ +G
Sbjct: 13 IIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVET 58
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 33.9 bits (78), Expect = 0.16
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 386 VIGAGGAGKALAYG-AKAKGARVV-IANRTYDRARELAETVG 425
IG G +A K++ ++V +RT D+ + +
Sbjct: 10 AIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN 51
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 33.2 bits (77), Expect = 0.16
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSL 431
+ L KL V+ G G G+A+A +GA + IA+ A E + G L++
Sbjct: 2 TQRLKDKLAVITGGANGIGRAIAERFAVEGADIAIADL--VPAPEAEAAIRNLGRRVLTV 59
Query: 432 A 432
Sbjct: 60 K 60
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 33.5 bits (76), Expect = 0.17
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 377 SALAGKLFVVIGAGGA-GKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD 433
+ + K ++GAGG G + + R+ + +G
Sbjct: 7 NDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA-PEGRDRLQGMGIPLTDGDG 63
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 33.4 bits (77), Expect = 0.17
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRAR----ELAETVGGHALSL-A 432
L+ + +V G G G+ +A GA V +A R+ EL E G+ + +
Sbjct: 39 LSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL 98
Query: 433 DLENFNPEDGMI 444
D+ +
Sbjct: 99 DVSDPGSCADAA 110
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 33.3 bits (75), Expect = 0.17
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARE---LAETVGGHALSLADLENFNPEDG 442
+ G G G+A+ + + G V + V AL+ + G
Sbjct: 24 IFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQYATQLKG 83
Query: 443 MILANTTSIGMQPKVDETPIP 463
I+ + T+ D+ +P
Sbjct: 84 KIVVDITNPLNFDTWDDLVVP 104
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 33.3 bits (77), Expect = 0.17
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETVGGHALSL-ADLE 435
L GK +V G+ G G +A GA +V+ A G A+ ADL
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLS 61
Query: 436 NFNPEDGMI 444
+ + +
Sbjct: 62 DVAQIEALF 70
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 33.7 bits (78), Expect = 0.17
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 369 LNVSGGVSSALAGKLFVVIGAGGAG-KALAYGAKAKGARV-VIANRTYDRARELAETVGG 426
+ + S A + +V G GG + KA + ++ + R+ A +G
Sbjct: 159 IRQALPFISKFAEPVVIVNGIGGLAVYTIQI-LKALMKNITIVGISRSKKHRDFALELGA 217
Query: 427 HA 428
Sbjct: 218 DY 219
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 33.2 bits (77), Expect = 0.18
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHALSL-A 432
L GK+ V+ G+ G GK++A + A+VV+ D A + E + GG A+++
Sbjct: 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKG 64
Query: 433 DLENFNPEDGMI 444
D+ + ++
Sbjct: 65 DVTVESDVINLV 76
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 33.5 bits (77), Expect = 0.18
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 380 AGKLFVVIGA-GGAGKALAYG-AKAKGARVVIANRTYDRARELAE-------TVGGHALS 430
+ +V G G G A+ + VV+ R R + + + H L
Sbjct: 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD 62
Query: 431 LADLE 435
+ DL+
Sbjct: 63 IDDLQ 67
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 33.3 bits (77), Expect = 0.19
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD 433
+GK ++ GAG G A +A GA ++ + A ++ +
Sbjct: 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLE 217
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 33.3 bits (77), Expect = 0.21
Identities = 14/47 (29%), Positives = 18/47 (38%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
G +V GAG G AKA GA V+ A+ +G
Sbjct: 170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 32.9 bits (76), Expect = 0.21
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
A K+ ++ G+ G G+A A +GA+V I R +R E + +
Sbjct: 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL 51
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 32.8 bits (76), Expect = 0.23
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHALSL-A 432
L GK+ +V GA G G+A+A +GA VV+ +A E+ + + G A+++ A
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRA 61
Query: 433 DLENFNPEDGMI 444
D+ N M+
Sbjct: 62 DVANAEDVTNMV 73
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 32.9 bits (76), Expect = 0.24
Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 355 VGAISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRT 413
+G+ GR N+ L+ ++ GA G A G RV+I +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVII---S 57
Query: 414 YDRARELAETV---GGHALSLADLENFNPEDGMI 444
Y + G AL D I
Sbjct: 58 YRTEHASVTELRQAGAVALY-GDFSCETGIMAFI 90
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
structural genomics, JCSG, protein structure initiative
hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
d.283.1.1
Length = 451
Score = 33.4 bits (77), Expect = 0.25
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 96 DENERV--DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK 136
DEN+++ + A++ G V L + + +R K ++
Sbjct: 16 DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDR 58
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 32.9 bits (76), Expect = 0.26
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAE 422
A ++V G G GKA+ VI D + +
Sbjct: 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVIN---IDIQQSFSA 43
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 33.3 bits (77), Expect = 0.26
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIA-NRTYDRARELAE--------TVGGH 427
+ K +V+G +G+A A GA V + + +D G H
Sbjct: 5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSH 64
Query: 428 ALSLAD 433
L L D
Sbjct: 65 PLELLD 70
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 32.9 bits (76), Expect = 0.26
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGHALS 430
K +V G+ G GKA A G +VI Y R+++ A G L
Sbjct: 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVI---NYARSKKAALETAEEIEKLGVKVLV 58
Query: 431 L-ADLENFNPEDGMI 444
+ A++ M
Sbjct: 59 VKANVGQPAKIKEMF 73
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 32.9 bits (76), Expect = 0.27
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETV---GGHALSL-A 432
L ++ +V GA G G+A+A A GA+V + + A E+ + GG A ++ A
Sbjct: 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKA 85
Query: 433 DLENFNPEDGMI 444
D+ + + +
Sbjct: 86 DVSQESEVEALF 97
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 32.8 bits (75), Expect = 0.27
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 386 VIGAG--GAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
+IG G L A+ +V+ R LA
Sbjct: 7 MIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR 48
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 33.0 bits (76), Expect = 0.27
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
VVIG G G A+AY + +
Sbjct: 21 VVIGGGIIGSAIAYYLAKENKNTAL 45
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 32.7 bits (73), Expect = 0.30
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
+IG G AG + A A G +V + +D++R GG
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHL----FDKSR----GSGG 39
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 32.6 bits (75), Expect = 0.30
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 376 SSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIA-NRTYDRARELAETV----GGHAL 429
S + VV GA G+A+A G RVVI + + + A LA+ + A+
Sbjct: 18 GSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAV 77
Query: 430 SL-ADLENFN 438
ADL N N
Sbjct: 78 VCQADLTNSN 87
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 32.9 bits (76), Expect = 0.31
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG-- 442
VIG G G GA GA + A + ++A G D+ N+ D
Sbjct: 171 CVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA-----TDIINYKNGDIVE 225
Query: 443 MILANTTSIG 452
IL T G
Sbjct: 226 QILKATDGKG 235
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 33.0 bits (76), Expect = 0.32
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
S AG ++G G G A+ GA VI + R LAE VG
Sbjct: 178 SGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVG 227
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 32.5 bits (75), Expect = 0.32
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD 433
GK+ +V GA G G A+ +A GARV +A DRA L +
Sbjct: 26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVA----DRAVAGIAADLHLPGDLRE 77
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 32.6 bits (75), Expect = 0.33
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 375 VSSALAGKLFVVIGAGGAG--KALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
+S K +V+GAGG A+ GA ++ + + A E A+ G
Sbjct: 165 KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR-EEAVEAAKRAGADY 219
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 32.6 bits (75), Expect = 0.33
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI--ANRTYDRARELAETVGGHALSLADLE 435
L GK+ VV GA G G +A GA VV + + + +A+ VGG AL+L D+
Sbjct: 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTL-DVT 269
Query: 436 NFNPEDGMI 444
+ D +
Sbjct: 270 ADDAVDKIT 278
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 32.5 bits (75), Expect = 0.34
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 374 GVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
G S A ++ V G GG G A++ G V + ++ + T
Sbjct: 18 GPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAV---SHSERNDHVSTW 66
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 32.4 bits (75), Expect = 0.34
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 12/75 (16%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGHALS 430
L GK +V G+ G GKA+A+ GA +V+ A + G + +
Sbjct: 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVL---NGSPASTSLDATAEEFKAAGINVVV 59
Query: 431 L-ADLENFNPEDGMI 444
D++N + M+
Sbjct: 60 AKGDVKNPEDVENMV 74
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 32.6 bits (75), Expect = 0.34
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA-----NRTYDRAREL-AETV 424
+ GAG G+ A GA+ GA VI R + ET+
Sbjct: 190 YIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL-KLLSDAGFETI 234
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif,
metal-binding site, polymorphism, metal binding protein;
2.50A {Homo sapiens}
Length = 287
Score = 32.5 bits (73), Expect = 0.35
Identities = 23/113 (20%), Positives = 35/113 (30%), Gaps = 15/113 (13%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEI----RLDGLKNFNPRENIKTLIKESPVPTL 81
+CV +SV+ A GAD +E+ G ++ + + +P
Sbjct: 44 VCV----DSVE----SAVNAERGGADRIELCSGLSEGGT--TPSMGVLQVVKQSVQIPVF 93
Query: 82 FTYRPIWEGGQYDGDENER-VDVLRLAMELGADYIDVELQVAREFNDSIRGKK 133
RP Y E E +RLA GAD + D
Sbjct: 94 VMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMS 146
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 32.1 bits (74), Expect = 0.36
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 372 SGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS 430
SG V + + +V G G G A+A G +V I TY R+ E E
Sbjct: 12 SGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAI---TY-RSGEPPEGFLAVKCD 67
Query: 431 LADLE 435
+ D E
Sbjct: 68 ITDTE 72
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 33.0 bits (75), Expect = 0.37
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
+V+GAG AG A A A GARV++
Sbjct: 132 LVVGAGPAGLAAAREASRSGARVMLL 157
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 32.1 bits (74), Expect = 0.38
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHALSL-A 432
K +V GA G G+++A +G V + + ++A + E + G + ++ A
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQA 61
Query: 433 DLENFNPEDGMI 444
++ + + MI
Sbjct: 62 NVADADEVKAMI 73
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 32.3 bits (73), Expect = 0.39
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI--------AN-RTYDRARELAETVGGH 427
++++G+G G A K +V++ N T D G H
Sbjct: 4 YIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAH 56
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 32.6 bits (75), Expect = 0.42
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA-----NRTYDRAREL-AETV 424
V GAG G A A A+ GA VVI R A+ E
Sbjct: 190 YVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQGFEIA 234
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 32.5 bits (75), Expect = 0.46
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 13/67 (19%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GG------HALSLADLE 435
+VIG G +G A GA +GA V++ D+ +L + GG + L L ++
Sbjct: 30 IVIGGGPSGLMAAIGAAEEGANVLL----LDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 85
Query: 436 NFNPEDG 442
P +G
Sbjct: 86 KHIPGNG 92
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 32.1 bits (74), Expect = 0.51
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L G +V G G G +LA A GA++++A+ +R G A++L D+
Sbjct: 173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-GHTAVALEDV 227
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2,
protein structure initiative, no structural genomics
consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Length = 247
Score = 31.7 bits (73), Expect = 0.51
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 386 VIGAGGAGKALAYGAKAKGA----RVVIANRTYDRARELAETVGGHALS 430
IG G G A+ G K +++ ++ + +E G +
Sbjct: 7 FIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTT 55
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 31.8 bits (72), Expect = 0.51
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
S+A+ G L G G + L+ +G R++ +R D+ + G L E
Sbjct: 1 SNAMTGTLLS-FGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI-RASGAEPLLWPGEE 58
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 31.9 bits (73), Expect = 0.52
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
L K + + A GG G + + + + + LAE
Sbjct: 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAE 47
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 32.2 bits (74), Expect = 0.54
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTY 414
VVIGAGGAG A G + ++ +
Sbjct: 11 VVIGAGGAGMRAALQISQSGQTCALLSKVF 40
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 31.8 bits (73), Expect = 0.57
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGHALS 430
A + +V G G G +A A G + I T E V G +
Sbjct: 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAI---TGIGDAEGVAPVIAELSGLGARVIF 83
Query: 431 L-ADLENFNPEDGMI 444
L ADL + + +
Sbjct: 84 LRADLADLSSHQATV 98
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 31.8 bits (73), Expect = 0.57
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI-ANRTYDRARELAETV---GGHALSL-A 432
+ ++ G GK + AKG V + + + ET + A
Sbjct: 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQA 64
Query: 433 DLENFNPEDGMI 444
D+ ++
Sbjct: 65 DVTKKEDLHKIV 76
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 31.7 bits (73), Expect = 0.58
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVI-ANRTYDRARELAETV---GGHALSL-A 432
++ ++ V G GG G ++ G RVV R + E G +
Sbjct: 11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEG 70
Query: 433 DLENFNPEDGMI 444
++ +++
Sbjct: 71 NVGDWDSTKQAF 82
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 31.7 bits (73), Expect = 0.59
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI---ANRTYDRARELAETV---GGHALSL 431
L K+ V+ G G A + +V+ + D A +L + + G
Sbjct: 9 LKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALY 68
Query: 432 -ADL 434
+DL
Sbjct: 69 QSDL 72
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 32.1 bits (73), Expect = 0.59
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 6/53 (11%)
Query: 380 AGKLFVVIGAGGAGK------ALAYGAKAKGARVVIANRTYDRARELAETVGG 426
G V+ GAGK + + R ++ T E+ E G
Sbjct: 7 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG 59
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 31.4 bits (72), Expect = 0.60
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 11/59 (18%)
Query: 385 VVIGAG-GAGKALAY-----GAK--AKGARVVIANRTYDRARELAETV---GGHALSLA 432
++ GAG G G+A+A +V+++RT +++ G ++
Sbjct: 6 LITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 64
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 31.9 bits (73), Expect = 0.62
Identities = 6/56 (10%), Positives = 13/56 (23%), Gaps = 4/56 (7%)
Query: 384 FVVIGAGGAGK----ALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
VIG+ G + L G + + + + +
Sbjct: 5 ICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWW 60
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 31.8 bits (73), Expect = 0.63
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
K ++IGAG G A A GA+ V A LA++ G
Sbjct: 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFG 205
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 31.4 bits (72), Expect = 0.65
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 372 SGGVSSALAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
+ G + +V G G G A+A A G +V + T+ + G
Sbjct: 6 TEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAV---THRGSGAPKGLFG 57
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 31.6 bits (72), Expect = 0.65
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 377 SALAGKLFVVIGAG-GAGKALAYGAKAKGARVVI------ANRTYDRARELAETV----- 424
+ G++ +V GAG G G+A A A+GARVV+ + + A++V
Sbjct: 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT 82
Query: 425 --GGHALSLAD 433
GG A++
Sbjct: 83 AAGGEAVADGS 93
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 31.8 bits (73), Expect = 0.65
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L GK ++G GG G+ +A+ AKA G RV+ Y R + + V + S ADL
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVI----AYTR-SSVDQNVDVISESPADL 170
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 31.9 bits (73), Expect = 0.65
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTY 414
VV+GAGGAG A+G G + +
Sbjct: 22 VVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI;
HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3
d.81.1.5
Length = 340
Score = 31.5 bits (72), Expect = 0.70
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 386 VIGAGGAGK---ALAYGAKAKGARVV-IANRTYDRARELAETVGG 426
++G G A + A + + + +RT A E A+ VG
Sbjct: 23 IVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN 67
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 31.6 bits (72), Expect = 0.71
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 27/127 (21%)
Query: 380 AGKLFVVIGA--GGAGKALAYGAKAKGARVVIANRTYDRARELAETV---GGHALSLADL 434
GK + + GK + K + R E+ ++ G + D
Sbjct: 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ 225
Query: 435 ENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVFDAV---YTPKITRLLREAEE 491
N I G + K+ + V + I R L
Sbjct: 226 NNSREFGPTIKEWIKQSGGEAKL---------------ALNCVGGKSSTGIARKLNN--- 267
Query: 492 SGATIVS 498
+++
Sbjct: 268 -NGLMLT 273
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.72
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 380 AGKLFVVIGAGGA--GKALAYGAKAKGARVVIANRTYDRAR 418
K ++ GAG G + G GA+VV+ + +
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV 515
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 32.0 bits (73), Expect = 0.74
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI-----ANRTYDRARELAETV-------G 425
K+ ++ GAG G GK + GA+VV+ A + A+ V G
Sbjct: 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG 65
Query: 426 GHALSLAD 433
G A++ +
Sbjct: 66 GVAVADYN 73
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 31.4 bits (72), Expect = 0.74
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 357 AISAIEDGLRGRLNVSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVV 408
I+A E L +S + L ++ GAGG G AKA G RV+
Sbjct: 129 GITAYE-TLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVI 179
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 31.7 bits (72), Expect = 0.75
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 27/112 (24%)
Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYGA-----------------------KAKGA 405
L+ ++ F G G+ +A+ A GA
Sbjct: 100 LSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGA 159
Query: 406 RVVIANRTYD----RARELAETVGGHALSLADLENFNPEDGMILANTTSIGM 453
++ + YD + A+ G + E + I+ ++
Sbjct: 160 ECIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLAD 211
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 31.3 bits (72), Expect = 0.76
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 379 LAGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRA----RELAETVGGHALSL-A 432
L GK+ +V G+ G G+A+A + G+ V+I + +RA E+A G A +
Sbjct: 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEM 64
Query: 433 DLENFNPEDGMI 444
+L + +
Sbjct: 65 NLLSEESINKAF 76
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural
genomics, PS biology, midwest center for structural
genomics, MCSG; 2.70A {Pseudomonas aeruginosa}
Length = 449
Score = 31.5 bits (72), Expect = 0.77
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 102 DVLRLAMELGADYIDVELQVAREFNDSIRGKKPEK 136
++ A GA +V + + + + S+R + E
Sbjct: 22 QIIAEARRQGASACEVAVSLEQGLSTSVRQGEVET 56
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 31.6 bits (71), Expect = 0.78
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
+++GAG +G + KG +V I D+ + +GG++ D E
Sbjct: 6 ILIVGAGFSGAVIGRQLAEKGHQVHI----IDQ----RDHIGGNSYDARDSET 50
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 31.4 bits (72), Expect = 0.79
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 376 SSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
+ G ++ GAG G AKA GA ++ + + A+ +
Sbjct: 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEIC 224
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 31.8 bits (71), Expect = 0.80
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
+VIGAG G A + G +I D ET GG A + E F
Sbjct: 14 LVIGAGPTGLGAAKRLNQIDGPSWMI----VDS----NETPGGLASTDVTPEGF 59
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 31.4 bits (72), Expect = 0.86
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
+ GK +IG G G+A+A AK R++ +RT R E+ + L DL
Sbjct: 148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRT--RKEEVERELNAEFKPLEDL 201
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 31.0 bits (71), Expect = 0.87
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 381 GKLFVVIGAG-GAGKALAYGAKAKGARVVIAN--RTYDRARELAETV---GGHALSLA 432
K+ +V G G G+ ++ A G + +A+ + ++A E + + A+ +
Sbjct: 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVG 59
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 31.2 bits (71), Expect = 0.90
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 386 VIGAGGAGKALAYG-AKAKGARVV-IANRTYDRARELAETVG 425
V+G + ++ A A + +A+R+ ++A+ A
Sbjct: 11 VMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANN 52
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase,
glutaminase, glutamine-dependent synthetase, ligase;
2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A*
3szg_A* 3dla_A* 3syt_A*
Length = 680
Score = 31.3 bits (71), Expect = 0.97
Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 29/88 (32%)
Query: 357 AISAIEDGLRGRLN----------VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGAR 406
A + GL RL VSGG+ S A L V A + +
Sbjct: 344 AYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHA--LIVA--------THAMDREGRPRS 393
Query: 407 VVIA---------NRTYDRARELAETVG 425
++A T + A +LA +G
Sbjct: 394 DILAFALPGFATGEHTKNNAIKLARALG 421
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 31.3 bits (70), Expect = 0.99
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVI 409
++++GAG AG LA + G RV+I
Sbjct: 32 YLIVGAGFAGSVLAERLASSGQRVLI 57
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 31.0 bits (71), Expect = 1.00
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 369 LNVSGGVSSALAGKLFVVIGAGGAGKALAYG--------AKAKGARVVIANRTYDRAREL 420
N+ AL + +I A + L G A A+G IA+ D E
Sbjct: 189 WNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLEF 248
Query: 421 AETVGGHALS-LADLEN 436
+ +G + S D E
Sbjct: 249 TDAMGEYKPSMEIDREE 265
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 31.1 bits (71), Expect = 1.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
VIG G G +A +G RV I NR+ +A L S+
Sbjct: 14 VIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAA 62
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 31.1 bits (71), Expect = 1.0
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
V+G +G A + G V + Y+R+ + G
Sbjct: 9 AVVGGSISGLTAALMLRDAGVDVDV----YERSPQPLSGFG 45
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase;
peptidoglycan synthesis, cell WALL, cell division,
oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia
coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A*
2q85_A* 2mbr_A*
Length = 340
Score = 31.0 bits (71), Expect = 1.0
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRI 210
L+ A D+V+ A V F + + +V IG GE + I
Sbjct: 290 LINEDNAKSEDVVQLAHHV--RQKVGEKFNVWLEPEVRFIG-ASGEVSAVETI 339
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 30.9 bits (71), Expect = 1.0
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 388 GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSL-ADLENFNPEDGMI 444
G G GK + G +V + R+ + A+ + D+ + +
Sbjct: 10 GGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE-RPNLFYFHGDVADPLTLKKFV 66
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 30.6 bits (70), Expect = 1.1
Identities = 14/59 (23%), Positives = 17/59 (28%), Gaps = 11/59 (18%)
Query: 385 VVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV-------GGHALSLADLE 435
+V A AG A G VV + AE G AL+ E
Sbjct: 5 LVTHARHFAGPAAVEALTQDGYTVVC---HDASFADAAERQRFESENPGTIALAEQKPE 60
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 30.9 bits (70), Expect = 1.2
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 386 VIGAGGAGK--ALAYGAKAKGARVV-IANRTYDRARELAETVGGHA 428
+ G G AG A++V + D + G
Sbjct: 7 ICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPV 52
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 30.6 bits (70), Expect = 1.2
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 367 GRLNVSGGVSSALAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
G N+ K+ V+ GA G G L + + RVV +R + +
Sbjct: 14 GTENLYFQSMMRNQQKVVVITGASQGIGAGLVRAYRDRNYRVVAT------SRSIKPSAD 67
Query: 426 GHALSL-ADLENFNPEDGMI 444
++ D+ D ++
Sbjct: 68 PDIHTVAGDISKPETADRIV 87
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 30.7 bits (70), Expect = 1.2
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L + ++G G G L +A G R ++ D R A G +L +L
Sbjct: 117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLL----CDPPRA-ARGDEGDFRTLDEL 167
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 30.7 bits (70), Expect = 1.3
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 385 VVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVG 425
++ GAG G + A G +V + + + E+ +G
Sbjct: 8 LIAGAGIGGLSCALALHQAGIGKVTL----LESSSEIRP-LG 44
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 30.9 bits (70), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+AGK+ VV G G GK A + GA V +
Sbjct: 275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWV 305
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI,
structure initiative, midwest center for structural
genomic oxidoreductase; 1.90A {Neisseria meningitidis}
SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Length = 263
Score = 30.5 bits (70), Expect = 1.3
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 385 VVIGAGGAGKALAYGAKAKGA-RVVIANRTYDRARELAETVG 425
+G G A+A G +G R+ IANR ++ L + +G
Sbjct: 4 YFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELG 45
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 30.9 bits (70), Expect = 1.3
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA 428
VV+G G G A A+ +G RV++ +R GG +
Sbjct: 8 VVVGGGPVGLATAWQVAERGHRVLV----LER-HTFFNENGGTS 46
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 30.7 bits (70), Expect = 1.3
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
G + + G G+A+ A A G R + R ++L++
Sbjct: 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSD 210
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 30.7 bits (70), Expect = 1.3
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 376 SSALAGKLFVVIGA-GGAGKALAYGAKAKG---ARVVIANRTYDRARELAETVGG 426
+ LA K ++ GA G GKA A ++++A R ++ EL +T+
Sbjct: 28 AERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQ 82
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric
dihydodiol dehydrogenase, structural genomics; 2.70A
{Enterococcus faecalis}
Length = 330
Score = 30.7 bits (70), Expect = 1.4
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 386 VIGAGGAGKALAYGAK-AKGARVV-IANRTYDRARELAETVG 425
++ G + + A V IA+R + A+++A+ +
Sbjct: 10 IMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA 51
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 30.9 bits (70), Expect = 1.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
+ GK ++ G G GK A K +GARV +
Sbjct: 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSV 302
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 31.0 bits (71), Expect = 1.4
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 385 VVIGAGGAGKALA-YGAKAKGARVVIANRTYDRARELAETVGG 426
VVIGAG G A G RV + + +GG
Sbjct: 11 VVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGG 53
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 30.7 bits (69), Expect = 1.4
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELAETVG 425
+ V G GG GK +LA V++ + D A L++
Sbjct: 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLL--STDPAHNLSDAFS 63
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 30.9 bits (70), Expect = 1.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI 409
++GK+ V+ G G GK A K GARV I
Sbjct: 255 ISGKIVVICGYGDVGKGCASSMKGLGARVYI 285
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 30.6 bits (70), Expect = 1.5
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
++IG G G A A A G +V++ + +GG
Sbjct: 35 LIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGG 77
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural
genomics, PSI, protein structure initiative; 1.70A
{Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Length = 256
Score = 30.6 bits (68), Expect = 1.5
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 26 ICVPIMGESVDKMVVDMGKANASGADLVEI-RLDGLKNFNP-RENIKTLIKESPVPTLFT 83
IC S++ A +GAD VE+ P +K++ + +P
Sbjct: 6 ICC----YSME----CALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPI 57
Query: 84 YRPIWEGGQYDGDENERV-DVLRLAMELGAD 113
RP Y E + + +R ELG
Sbjct: 58 IRPRGGDFCYSDGEFAAILEDVRTVRELGFP 88
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
G++ +V GAG G G+A A +GA VV+
Sbjct: 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVV 38
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 30.8 bits (70), Expect = 1.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+VIG G AG A + KG ++
Sbjct: 9 LVIGGGLAGLRAAVATQQKGLSTIV 33
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 30.8 bits (70), Expect = 1.5
Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALAGK 382
D++ + + + ++ ++F ++G + + + ++ +
Sbjct: 51 DQLSNGSAIQKCLASFSKIETVPQMF-VRGKFIGDSQTVL-----KYYSNDELAGIVNES 104
Query: 383 LF----VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
+ +VIG G G A A GA+ + + +GG
Sbjct: 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGG 152
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 30.7 bits (70), Expect = 1.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
LA + + V+GAG G L + G + V+ +ARE G +SL L
Sbjct: 114 LAERTYGVVGAGQVGGRLVEVLRGLGWK-VLVCDPPRQAREP----DGEFVSLERL 164
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A
{Streptococcus agalactiae serogroup V}
Length = 329
Score = 30.7 bits (70), Expect = 1.5
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 386 VIGAGGAGKALAYGAK-AKGARVV-IANRTYDRARELAETVG 425
V+ G + A VV +++RT + A+ A
Sbjct: 10 VVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYH 51
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 30.5 bits (69), Expect = 1.7
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 385 VVIGAGGAG----KALAYGAKAKGARVVIANRTY-DRARELAETVGGHALSLADLENFNP 439
++IG G +G AY AK G +V + + +R+ +A+ + +
Sbjct: 26 LIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTGRSER 85
Query: 440 EDGM 443
++ +
Sbjct: 86 QNTL 89
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 30.4 bits (69), Expect = 1.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HALSLAD 433
L G+ +++G G G+ +A+ K G +V+ +R+ R R + V L+ AD
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRS-GRERAGFDQVYQLPALNKMLAQAD 196
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 30.5 bits (69), Expect = 1.8
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 352 TDYVGAISAIEDGL-RGRLNVSGGVSSAL--------AGKLFVVIGAGGAGKALAYGAKA 402
+ I A L + ++G + S AG + I + +A + AKA
Sbjct: 44 FNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKA 103
Query: 403 KGARVVIANRTYDRARELAETVGGHALSLADLEN 436
+ A + +A R DR REL ++ + D E
Sbjct: 104 R-AAMTMARRNLDRQRELDKS---EIAAKRDFEQ 133
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 29.9 bits (68), Expect = 1.8
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 381 GKLFVVIGA-GGAGKALAYGAKAKGARVVIANRT 413
++IGA G G A+ K A V+ A R
Sbjct: 3 AMKILLIGASGTLGSAVKERL-EKKAEVITAGRH 35
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.4 bits (69), Expect = 1.9
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 29/121 (23%)
Query: 323 DEVDTVAKSIGAVNCIIRRQSDGKLFGYNTDYVGAISAIEDGLRGRLNVSGGVSSALA-- 380
+E+ +++ V + +GK FG G ++ E + +++ +A A
Sbjct: 161 NEIT--ERNVMGVPAVFV---NGKEFG-----QGRMTLTE--IVAKVDTGAEKRAAEALN 208
Query: 381 -GKLF--VVIGAGGAGKALA-YGAKAKGARVVIANRTYDRARELAETVGGHALSLADLEN 436
+ +++G+G AG A A Y A+ G R + + E GG L D+EN
Sbjct: 209 KRDAYDVLIVGSGPAGAAAAVYSARK-GIRTGL----------MGERFGGQVLDTVDIEN 257
Query: 437 F 437
+
Sbjct: 258 Y 258
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.4 bits (69), Expect = 2.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
A+ K V+GAG AG A A A A+G +V + +D E+ GG
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTL----FDAHSEI----GG 410
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 30.2 bits (69), Expect = 2.0
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L +G G G A+A + GA + + + +G ++ ++L
Sbjct: 143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEA-KALDTQTEQRLGLRQVACSEL 197
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 29.9 bits (68), Expect = 2.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 391 GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
G G+A+A A A G V+ R + +L A +++
Sbjct: 16 GFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAIS 57
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 29.9 bits (68), Expect = 2.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT 413
+ G+ V+G G G + A GA+V +RT
Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT 156
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 30.2 bits (69), Expect = 2.1
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA-DLENF 437
V+G GK LA +++G V I NRT + E+ + L LE F
Sbjct: 10 VVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEF 62
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 30.0 bits (68), Expect = 2.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 385 VVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLE 435
+V+GA G + L K KG V R ++ EL E G + +A+LE
Sbjct: 25 LVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-GASDIVVANLE 75
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 30.1 bits (68), Expect = 2.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 384 FVVIGAGGAGKALAYG-AKAKGARVVI 409
+VV+GAG G A AY G V++
Sbjct: 26 YVVVGAGVVGLAAAYYLKVWSGGSVLV 52
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 30.1 bits (69), Expect = 2.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
++IGAG AG A G V + +D +++
Sbjct: 8 IIIGAGAAGLFCAAQLAKLGKSVTV----FDNGKKIGR 41
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 30.2 bits (69), Expect = 2.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
V+IGAG AG A A +G RV++ D AR E
Sbjct: 31 VIIGAGAAGMMCAIEAGKRGRRVLV----IDHARAPGE 64
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 30.3 bits (69), Expect = 2.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA-DLENF 437
V+G G+ LA +++G V I NR+ ++ E+ G L ++ F
Sbjct: 20 VVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF 72
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 29.6 bits (66), Expect = 2.2
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 385 VVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLAD 433
+IGA G AG + AK +G V R + + + + + D
Sbjct: 4 GIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFD 53
>1xy7_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G48480, reductively methylated protein, CATH
3.10.180 fold; 1.80A {Arabidopsis thaliana} SCOP:
d.32.1.9 PDB: 2q48_A
Length = 166
Score = 29.3 bits (65), Expect = 2.2
Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 18/127 (14%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHA-LSLADLENFNPEDG 442
+++ A G A+ + A GA + R + + L+LA
Sbjct: 29 MLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAG--------- 79
Query: 443 MILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSGLE- 501
S + V P A + V + T + +A ++GA V E
Sbjct: 80 -------SSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEA 132
Query: 502 MFIGQAY 508
Sbjct: 133 EVELGFK 139
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 30.4 bits (69), Expect = 2.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA 410
++GAGGAG A A IA
Sbjct: 9 AIVGAGGAGLRAAIAAAQANPNAKIA 34
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 29.9 bits (68), Expect = 2.3
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 386 VIGAGGAGK--ALAYGAKAKGARVV-IANRTYDRARELAETVGG 426
VIG G G A A + I++ DR RE+ E +G
Sbjct: 7 VIGLGRIGTIHAENL-KMIDDAILYAISDVREDRLREMKEKLGV 49
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 30.2 bits (69), Expect = 2.4
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 140 IVSSHNYQYTPSVEDLSNLVARIQASGADIVKFATTALD 178
++S NY E L +A+++ + T +LD
Sbjct: 1 MISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLD 39
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 30.0 bits (68), Expect = 2.4
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 386 VIGAGG-AGKALAYG-AKAKGARVV-IANRTYDRARELAETVGG 426
++G G + L + + R+V + +RAR + +
Sbjct: 10 LVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISD 53
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 29.9 bits (67), Expect = 2.4
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
IG G + LA +++G VV + + G + +
Sbjct: 5 FIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEED 53
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 30.0 bits (68), Expect = 2.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+V+GAG G A Y +G + ++
Sbjct: 7 IVVGAGSMGMAAGYQLAKQGVKTLL 31
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 29.8 bits (68), Expect = 2.5
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
L K+ +V GA G G+A+A +G++V+ + D + +
Sbjct: 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIH-DPGEAKYDHI 51
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 28.8 bits (65), Expect = 2.6
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 382 KLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
K F VIG G G ++ G V+ + ++ A
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA 49
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 29.9 bits (68), Expect = 2.6
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANR--TYDRAREL 420
+ +++G G L G V + + + A +
Sbjct: 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKR 184
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.9 bits (66), Expect = 2.6
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 371 VSGGVSSALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS 430
+ G++ K +++GAG AG G V I +R VGG +
Sbjct: 34 IDNGLNPPGPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR-------VGGRIKT 86
Query: 431 L 431
Sbjct: 87 F 87
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 30.0 bits (68), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVV 408
++IG+G G A Y A G V+
Sbjct: 6 IIIGSGSVGAAAGYYATRAGLNVL 29
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 29.5 bits (67), Expect = 2.7
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 385 VVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLA 432
+ G+ G G AL G V+ +R T GG ++A
Sbjct: 5 AITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVA 53
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 29.8 bits (67), Expect = 2.7
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 37 KMVVDMGKANASGADLVEIRLDGLKNFNPR------ENIKTLIKESPVPTLFTYRPIWEG 90
+ + M +A+A L + P E ++ + KE VP +
Sbjct: 141 QDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKESG---- 196
Query: 91 GQYDGDENERVDVLRLAMELGADYIDV 117
++ +L G D
Sbjct: 197 ------NGISMETAKLLYSYGIKNFDT 217
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 29.8 bits (68), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
+VIG G G A A A G +V +A+ R +GG
Sbjct: 9 LLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGG 51
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 29.5 bits (67), Expect = 2.9
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L GK ++G G GKA+A G ++ +R R + + + + + +L
Sbjct: 144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRH--RKVNVEKELKARYMDIDEL 197
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 29.7 bits (66), Expect = 3.0
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
VIGAG +G A AY K G V + E GG
Sbjct: 17 AVIGAGVSGLAAAYKLKIHGLNVTVF--------EAEGKAGG 50
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 29.5 bits (66), Expect = 3.0
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELAETVG 425
+ G GG GK A A G + ++ + D A L++++
Sbjct: 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVI--STDPAHSLSDSLE 61
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 29.6 bits (67), Expect = 3.0
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 380 AGKL----FVVIGAGGAG-KALAYGAKAKGARVVIANRTYD-R--ARELAETVGGHALSL 431
AGK+ +VIGAG AG A+ A + GA V R +D R +E +++G L L
Sbjct: 167 AGKVPPAKVMVIGAGVAGLAAIG-AANSLGAIV----RAFDTRPEVKEQVQSMGAEFLEL 221
Query: 432 ADLENFNPEDG 442
E DG
Sbjct: 222 DFKEEAGSGDG 232
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 29.8 bits (67), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 379 LAGKLFVVIGAG-GAGKALAYGAKAKGARVVI 409
G++ VV GAG G G+ A +GA+VV+
Sbjct: 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVV 48
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 29.6 bits (66), Expect = 3.1
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
V+G G +G A+A+ +++G V+ E + +GG
Sbjct: 20 AVVGGGISGLAVAHHLRSRGTDAVLL--------ESSARLGG 53
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 29.4 bits (67), Expect = 3.1
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L K + G G G+ALA A+ + + + + A SL L
Sbjct: 144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSL 199
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 29.8 bits (68), Expect = 3.3
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 385 VVIGAGGAGKALA-YGAKAKGARVVIANRTYDRARELAETVGG 426
VVIGAG G A RV + + +GG
Sbjct: 7 VVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGG 49
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 29.6 bits (67), Expect = 3.3
Identities = 26/104 (25%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 377 SALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG------GHALS 430
S + GK +IG G G A A K G V + R+ AE G A++
Sbjct: 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVA 71
Query: 431 LADLENFNPEDGMILANTTSIGMQPKVDETPIPKHALGHYALVF 474
AD+ MIL Q ++ + I + L F
Sbjct: 72 AADVV-------MILTPDE---FQGRLYKEEIEPNLKKGATLAF 105
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 29.6 bits (66), Expect = 3.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 385 VVIGAGGAGKALAYGAKAKGARV 407
+++G G A+ A +
Sbjct: 26 LMVGGGMGNCGAAFEAVRWADKY 48
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 29.5 bits (67), Expect = 3.4
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVI--ANRTYDRARELAETVGGHALSLADL 434
L G+ + G G G+ +A +A G V++ + +RAR V A S L
Sbjct: 158 LKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAV---AESKDAL 212
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 29.6 bits (67), Expect = 3.4
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 5/55 (9%)
Query: 376 SSALAGKLFVVIGAG--GAGKALAYGAKAKGARVVIANRTYDRA---RELAETVG 425
+ V+G G G KG + DR ++ E +
Sbjct: 168 AFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD 222
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 29.1 bits (66), Expect = 3.5
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 385 VVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+V G A G V + ++ + EL + +
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQ-LKPMSEQEPAEL 62
Query: 444 I 444
I
Sbjct: 63 I 63
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 29.4 bits (67), Expect = 3.5
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 20/72 (27%)
Query: 375 VSSALAGKLFVVIGAGGAGK-----ALAYGAK-------------AK--GARVVIANRTY 414
V+ A G+ + G GG G A A G AK GA +V+
Sbjct: 159 VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKE 218
Query: 415 DRARELAETVGG 426
D A+ + E VGG
Sbjct: 219 DAAKFMKEKVGG 230
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 29.5 bits (67), Expect = 3.6
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L G+ + G G G+A+A A+ G + NRT R E + +L L
Sbjct: 171 LTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRT--RLSHALEEGAIYHDTLDSL 224
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 29.3 bits (64), Expect = 3.6
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAR 418
+++GAG G A + + + + +D+A
Sbjct: 4 VLIVGAGMTGSLCAALLRRQTSGPLYLAV-WDKAD 37
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 29.5 bits (66), Expect = 3.6
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 382 KLFVVIGAGGAGK-------ALAYGAKAKGARVVIANRTYDRARELAETVG 425
K V G GG GK A+ + ++ + D A L++ G
Sbjct: 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLI--STDPAHNLSDAFG 67
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 29.4 bits (67), Expect = 3.7
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 379 LAGKLFVV---IGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHAL 429
L K V+ I AGG GK + G + + + +LA+ + G+ L
Sbjct: 38 LNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLT---KDPEVVGQLAKQMIGYNL 88
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A
{Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A
1qnl_A
Length = 385
Score = 29.2 bits (66), Expect = 3.7
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 110 LGADYI--DVELQVAREFNDSIRGKKPEKCKVIVSSHNYQYTPSVEDLSNLVARIQASGA 167
+G+DYI V R G ++ PS +DL V RI + A
Sbjct: 146 IGSDYIYPRESNHVMRHLYRQHGGT-------VLEEIYIPLYPSDDDLQRAVERIYQARA 198
Query: 168 DIV 170
D+V
Sbjct: 199 DVV 201
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 29.5 bits (67), Expect = 3.7
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRT 413
+IG+G AG + + G +V + ++
Sbjct: 3 YIIGSGIAGLSAGVALRRAGKKVTLISKR 31
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 29.4 bits (67), Expect = 3.7
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
+IGAG G + A+ +G +V+ D +E A G + L + F P+
Sbjct: 9 ALIGAGFVGSSYAFALINQGITDELVV----IDVNKEKAM---GDVMDLNHGKAFAPQPV 61
Query: 443 MILANT 448
T
Sbjct: 62 KTSYGT 67
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 29.4 bits (66), Expect = 3.8
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELAETVG 425
K V G GG GK +LA + V++ + D A L++ G
Sbjct: 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI--STDPAHNLSDAFG 66
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 29.2 bits (66), Expect = 3.8
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
+IG G G + + G V+ + + + L A S+ +
Sbjct: 27 MIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEF 75
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 29.4 bits (67), Expect = 3.9
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
V+IG G G + A+ + +VI D E G + L ++P
Sbjct: 10 VLIGNGAVGSSYAFSLVNQSIVDELVI----IDLDTEKVR---GDVMDLKHATPYSPTTV 62
Query: 443 MILANT 448
+ A
Sbjct: 63 RVKAGE 68
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 29.4 bits (65), Expect = 3.9
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVV---IANRTYDRARELAETVGGHALSL--ADL 434
G+ V IG G + G RV I + +R++ E +G +++ D
Sbjct: 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE 181
Query: 435 ENFNPED 441
+ +
Sbjct: 182 TVIDGLE 188
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 29.1 bits (66), Expect = 3.9
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 364 GLRGRLNVSGGVSSAL-AGKLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDR- 416
RL +S + AG++ ++G GAGK +A G + + A + +
Sbjct: 11 AESTRLG---PLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAW 66
Query: 417 -ARELAETVG 425
A +LA
Sbjct: 67 SATKLALHRA 76
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 29.3 bits (64), Expect = 4.0
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 385 VVIGAGGAGKALAYGAK--AKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
VVIGAG G A A+ + A G +++ L G L+ + G
Sbjct: 40 VVIGAGRMGAACAFYLRQLAPGRSLLLVEE-----GGLPNEEGATILAPGVWTAQDIPAG 94
Query: 443 M 443
Sbjct: 95 Q 95
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 29.2 bits (66), Expect = 4.0
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 386 VIGAGGAGK--ALAYGAKAKGARVV-IANRTYDRARELAETVGGHA 428
+ GAG G A A +V IA+ + A+ LAE G A
Sbjct: 9 LFGAGRIGHVHAANI-AANPDLELVVIADPFIEGAQRLAEANGAEA 53
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 29.1 bits (66), Expect = 4.2
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 380 AGKLFVVIGA-GGAGKALAYGAKAKGARVVIANRTYDRARELAE 422
K FV+ K + AK +G R ++ R ++ L +
Sbjct: 164 GEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD 207
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 29.6 bits (67), Expect = 4.2
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 29/90 (32%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIA----------------------NRTYD-RARELA 421
+V+GAG +G A +G VV+A R + R LA
Sbjct: 395 LVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLA 454
Query: 422 ETVG-----GHALSLADLENFNPEDGMILA 446
E ++ D+ F + +I A
Sbjct: 455 ELPNVEIYRESPMTGDDIVEFGF-EHVITA 483
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 28.3 bits (64), Expect = 4.2
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAE-----TVGGHALSLADLENFNP 439
V+ G G G +A A + G VV+ ++ L TV G A L+
Sbjct: 23 VIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGM 82
Query: 440 ED-GMILANTTS 450
E M+ A T
Sbjct: 83 EKADMVFAFTND 94
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 29.1 bits (66), Expect = 4.3
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 380 AGKLFVVIGAGGAGKALAYGAKAKGARVVIANRT---YDRAREL 420
AG VV G GG AKA GA V++ + + DRA L
Sbjct: 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL 232
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 29.1 bits (66), Expect = 4.3
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
L + V+G G G+ K GA+V+ YD + +SL DL
Sbjct: 143 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA----YDPYPMKGDHPDFDYVSLEDL 194
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment,
heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP:
c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Length = 294
Score = 29.1 bits (65), Expect = 4.3
Identities = 12/49 (24%), Positives = 17/49 (34%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
V+G G AG K + + + REL +SL D
Sbjct: 12 VVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDA 60
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 29.1 bits (66), Expect = 4.6
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 388 GAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVG 425
AGG G A AK GA+V+ A E ++VG
Sbjct: 168 AAGGIGTAAIQIAKGMGAKVIAVVNR-TAATEFVKSVG 204
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 29.1 bits (65), Expect = 4.6
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELAETVG 425
K + G GG GK A KG +VVI + D A L +
Sbjct: 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV--STDPAHSLRDIFE 73
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 29.2 bits (66), Expect = 4.6
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 357 AIS-AIEDGLRGRLNVSGG-VSSALAG---------KLFVVIGAGGAGK---ALAYGAKA 402
A++ A+ G R L S G S++ A + + G GK A+ +GA
Sbjct: 76 AVTDALAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGA-- 133
Query: 403 KGARVVIANRTYDRARELAETVGGHALSLADLENFNP 439
+++ + +D ELA + +++ + + NP
Sbjct: 134 ---KIIQIDGNFDDCLELARKMAADFPTISLVNSVNP 167
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 29.1 bits (65), Expect = 4.7
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELAETVG 425
G GG GK A A +G RV++ + D A + +
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV--STDPASNVGQVFS 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 29.0 bits (65), Expect = 4.7
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 381 GKLFVVIGAGGAGK------ALAYGAKAKGARVVIANRTYDRARELAETVGGH 427
+L ++ GAGK ++ A + R +I T A E+ E + G
Sbjct: 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL 71
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 29.0 bits (66), Expect = 4.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIA 410
+ IG G G A+A A A G RV +
Sbjct: 7 LIAIGGGSGGLAVAEKAAAFGKRVALI 33
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 29.0 bits (66), Expect = 4.8
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
V++G+G G +A K VV+ +D + + G AL + +
Sbjct: 8 VLVGSGMIGGVMATLIVQKNLGDVVL----FDIVKNMPH---GKALDTSHTNVMAYSNCK 60
Query: 444 I 444
+
Sbjct: 61 V 61
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics,
center for structural of infectious diseases, csgid;
HET: FAD; 2.20A {Vibrio cholerae}
Length = 357
Score = 29.1 bits (66), Expect = 4.9
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 158 LVARIQASGADIVKFATTALDITDVARVFQITVHSQVPIIGLVMGERGLISRI 210
+V AS D++ A V + I + +V IG E L +
Sbjct: 304 IVNTGDASAQDVLMLAADI--QQRVFNCYGIELEHEVRFIG-ESEETNLKQWM 353
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint
center for structural genomics, JCSG, protein structu
initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga
maritima}
Length = 335
Score = 29.0 bits (66), Expect = 4.9
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 386 VIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAET-----VGGHALSL---ADLENF 437
V+GAG G A G V++ R + + + V +++ DLE
Sbjct: 19 VLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEEI 78
Query: 438 NPEDGMILA 446
ED +++A
Sbjct: 79 KKEDILVIA 87
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 28.7 bits (65), Expect = 5.1
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD--RARELAETVGGHALSLADL 434
LAGK ++G G G + A A G +V+ YD RE AE + A+SL +L
Sbjct: 140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVL----AYDILDIREKAEKINAKAVSLEEL 193
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 29.1 bits (66), Expect = 5.2
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
GK +IG G G L A++ G V YD +L L+DL
Sbjct: 143 ARGKKLGIIGYGHIGTQLGILAESLGMYVY----FYDIENKLPLGNATQVQHLSDL 194
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
protein, non-mevalonate pathway, terpene biosynt
isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Length = 366
Score = 29.1 bits (66), Expect = 5.2
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 159 VARIQASGADIVKFATTALDITDVARVFQITVHSQVPII 197
+ R+ +G +IV+ A DV + +I S +P+I
Sbjct: 52 IKRLYEAGCEIVRVAV--PHKEDVEALEEIVKKSPMPVI 88
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 29.0 bits (65), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+IGAG AG +A K G VI
Sbjct: 8 AIIGAGAAGIGMAITLKDFGITDVI 32
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 29.2 bits (64), Expect = 5.3
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS 430
++IG+G +G A A ++ G V + E + VGG +
Sbjct: 281 VIIIGSGVSGLAAARQLQSFGMDVTLL--------EARDRVGGRVAT 319
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 28.7 bits (65), Expect = 5.4
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 20/72 (27%)
Query: 375 VSSALAGKLFVVIGAGGAGK-----ALAYGAK-------------AK--GARVVIANRTY 414
V+ G+ V+ G GG G A A G + A+ GA V + R
Sbjct: 161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDT 220
Query: 415 DRARELAETVGG 426
D A L + +GG
Sbjct: 221 DPAAWLQKEIGG 232
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 28.8 bits (65), Expect = 5.4
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG-----HALSLAD 433
++GAG G +A +A G + +R+ ++ E+ G L+
Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRS-RKSWPGVESYVGREELRAFLNQTR 195
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 28.7 bits (65), Expect = 5.6
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 385 VVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+IG+G G + Y + A VV+ YD + + E G AL L+ + + +
Sbjct: 13 AMIGSGMIGGTMGYLCALRELADVVL----YDVVKGMPE---GKALDLSHVTSVVDTNVS 65
Query: 444 ILANT 448
+ A
Sbjct: 66 VRAEY 70
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 28.6 bits (65), Expect = 5.6
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 385 VVIGA-GGAGKALAYGAKAKGARVVIA-NRTYDRARELAETV---GGHALSL-ADLENFN 438
VV GA G GKA+A G +V++ R+ A E+++ + GG A++ D+
Sbjct: 5 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEA 64
Query: 439 PEDGMI 444
+ M+
Sbjct: 65 DVEAMM 70
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.9 bits (65), Expect = 5.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
+++GAG +G A G V + D A ++ GG
Sbjct: 386 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHL----TDTAEKI----GG 426
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 28.7 bits (63), Expect = 5.9
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
V+IGAG G A G + E +T GG + S D F
Sbjct: 13 VIIGAGPTGLGAAVRLTELGYKNWHLY-------ECNDTPGGLSRSFLDENGF 58
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin
biosynthesis, TIM barrel, transferase; 2.35A
{Mycobacterium tuberculosis}
Length = 243
Score = 28.4 bits (64), Expect = 5.9
Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 38/118 (32%)
Query: 98 NERVDVLRLAMELGADYI-----DVELQVAREFNDSIRGKKPEKCKVI-VSSHNYQYTPS 151
N+R D +A GAD + D+ + VAR+ I +I S+H+
Sbjct: 102 NDRAD---IARAAGADVLHLGQRDLPVNVARQ----ILAPD----TLIGRSTHDPD---- 146
Query: 152 VEDLSNLVARIQASGADIVK----FATT-----ALDITDVARVFQITVHSQVPI--IG 198
VA A AD + T A + RV P IG
Sbjct: 147 ------QVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIG 198
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 28.7 bits (65), Expect = 5.9
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 18/68 (26%)
Query: 353 DYVGAISAIEDGLRGRLN----------VSGGVSSALAGKLFVVIGAGGAGKALAYGAKA 402
D I + L+ + +SGG S LAG+L A A+ +
Sbjct: 17 DPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRL--------AQLAVESIREE 68
Query: 403 KGARVVIA 410
G IA
Sbjct: 69 GGDAQFIA 76
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia
reductive methylation, structural genomics, PSI-2,
protein initiative; HET: MLY; 2.00A {Streptococcus
pneumoniae} PDB: 2ho5_A
Length = 325
Score = 28.5 bits (64), Expect = 6.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 386 VIGAGG-AGKALAYGAKAKGARVV-IANRTYDRARELAETVG 425
VIG G + + + ++V I +R + A A
Sbjct: 6 VIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQ 47
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 28.8 bits (65), Expect = 6.3
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 380 AGKL----FVVIGAGGAGKALAYGAKAKGARVVIANRTYD-R--ARELAETVGGHALSLA 432
AG + V+GAG AG A+ GA V D R A+E ++G +++
Sbjct: 185 AGTVPAAKIFVMGAGVAGLQAIATARRLGAVV----SATDVRPAAKEQVASLGAKFIAVE 240
Query: 433 DLENFNPEDG 442
D E E
Sbjct: 241 DEEFKAAETA 250
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.5 bits (64), Expect = 6.4
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 10/44 (22%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI---ANR-------TYDRAR 418
VVIG G +G + Y + G VI +
Sbjct: 7 VVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLH 50
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 28.7 bits (64), Expect = 6.4
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 382 KLFVVIGAGGAGK-----ALAYGAKAKGARVVIANRTYDRARELA 421
+ +G G + A A ++G RV++A + L
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGLA-EPVLPLL 46
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 27.6 bits (62), Expect = 6.5
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETV 424
++VIG+ AG L A G +V+ +++ ++ L +
Sbjct: 9 YIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG 49
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 28.7 bits (65), Expect = 6.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYD--RARELAETVGGHALSLADL 434
L GK +IG G G +A A A G ++ YD E A+ V G + L L
Sbjct: 140 LEGKTIGIIGFGRIGYQVAKIANALGMNIL----LYDPYPNEERAKEVNGKFVDLETL 193
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 28.6 bits (65), Expect = 6.7
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
VVIGAG G + + +G +V+ D A G A+ + F P+
Sbjct: 10 VVIGAGFVGASYVFALMNQGIADEIVL----IDANESKAI---GDAMDFNHGKVFAPKPV 62
Query: 443 MILANT 448
I
Sbjct: 63 DIWHGD 68
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 28.4 bits (64), Expect = 6.7
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 385 VVIGAG-GAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
V+ G G G A +A G ++V + T G ++AD+
Sbjct: 5 VISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADV 55
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 28.4 bits (64), Expect = 6.8
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRAR-ELAETVGGHALSLADL 434
L VIG G G +A A G +V+ YD + E + G SL +L
Sbjct: 139 LNRLTLGVIGTGRIGSRVAMYGLAFGMKVLC----YDVVKREDLKEKGCVYTSLDEL 191
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 28.2 bits (64), Expect = 6.9
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+IGAG G A+ AK +V+ D + + G AL L + D
Sbjct: 6 SIIGAGFVGSTTAHWLAAKELGDIVL----LDIVEGVPQ---GKALDLYEASPIEGFDVR 58
Query: 444 I 444
+
Sbjct: 59 V 59
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 28.5 bits (63), Expect = 7.1
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 10/60 (16%)
Query: 385 VVIGAGGAGKALAYGAKAKG--ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
VV+G G +G A +Y +VV+ E +E +GG S+ E G
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLV--------ESSERLGGWIRSVRGPNGAIFELG 57
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer,
rossmann-fold NAD domain, human MU crystallin homolog;
HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13
PDB: 1vll_A
Length = 322
Score = 28.4 bits (64), Expect = 7.1
Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 10/70 (14%)
Query: 374 GVSSALAGKLF--------VVIGAGGAGK--ALAYGAKAKGARVVIANRTYDRARELAET 423
G + +A K IG G A V + A++
Sbjct: 110 GAAGGIAAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY 169
Query: 424 VGGHALSLAD 433
+S +
Sbjct: 170 CEDRGISASV 179
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 28.2 bits (64), Expect = 7.2
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+IG+G G LA+ A K VV+ +D A + G L +A+ + D
Sbjct: 11 ALIGSGMIGGTLAHLAGLKELGDVVL----FDIAEGTPQ---GKGLDIAESSPVDGFDAK 63
Query: 444 I 444
Sbjct: 64 F 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase,
hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP:
b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19
d.315.1.1
Length = 1151
Score = 28.8 bits (65), Expect = 7.3
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 380 AGKLFVVIGAGGAGKAL--AYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENF 437
AG+ ++ GA A A A+ VV+ A L + ++ F
Sbjct: 16 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHD----------EISQF 65
Query: 438 NPED 441
+
Sbjct: 66 TDQM 69
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 28.5 bits (63), Expect = 7.5
Identities = 13/67 (19%), Positives = 26/67 (38%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+ +G G + ALA + + + + G +S ++L+ +D +
Sbjct: 33 LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLV 92
Query: 444 ILANTTS 450
L N TS
Sbjct: 93 SLRNPTS 99
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 28.4 bits (64), Expect = 7.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 385 VVIGAGGAGKALAYG-AKAKGARVVI 409
+++G GG G A AY AK G V
Sbjct: 25 IIVGGGGHGLATAYFLAKNHGITNVA 50
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 28.6 bits (63), Expect = 8.3
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 378 ALAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELA 421
A +V+GAG G A GARVV+ + +R
Sbjct: 89 ACTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRHNV 132
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric
dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A
{Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Length = 334
Score = 28.0 bits (63), Expect = 8.4
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 386 VIGAGG-AG---KALAYGAKAKGARVVIANRTYDRARELAETVG 425
++ G + L +++ V +A R RA+E A+
Sbjct: 7 IVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD 50
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 28.4 bits (63), Expect = 8.5
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVIAN-------RTYDRARELAETVGGHALSLADLENF 437
+IG G AG A + V + + + + + +L
Sbjct: 112 AIIGGGPAGIGAALEL-QQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGK 170
Query: 438 NPEDGMILANTTSIGMQP 455
E+ I T+++G+
Sbjct: 171 LNENTKIYLETSALGVFD 188
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 28.2 bits (62), Expect = 8.9
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 385 VVIGAGGAGKALA-YGAKAK-GARVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
+++GAG +G + A AK + +V I E + GG + L +
Sbjct: 69 IIVGAGSSGLSAAYVIAKNRPDLKVCII--------ESSVAPGGGSWLGGQLFS------ 114
Query: 443 MILANTTSIGMQPKVDETPIPKHALGHYALVFDAVYTPKITRLLREAEESGATIVSG 499
A + E IP G Y +V A T L + + + +
Sbjct: 115 ---AMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFIS-TVLSKVLQLPNVKLFNA 167
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 28.0 bits (63), Expect = 9.0
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 379 LAGKLFVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALSLADL 434
+ V+G G G+ A GA V+ D +SL ++
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIFHGMGATVIG----EDVFEIKGIEDYCTQVSLDEV 195
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 28.3 bits (62), Expect = 9.0
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 384 FVVIGAGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGGHALS 430
++IG+G +G A A ++ G V + E + VGG +
Sbjct: 110 VIIIGSGVSGLAAARQLQSFGMDVTLL--------EARDRVGGRVAT 148
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 27.9 bits (63), Expect = 9.2
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 385 VVIGAGGAGKALAYGAKAKG-ARVVIANRTYDRARELAETVGGHALSLADLENFNPEDGM 443
+IGAG G +A K V + +D + + G AL L
Sbjct: 18 SIIGAGQIGSTIALLLGQKDLGDVYM----FDIIEGVPQ---GKALDLNHCMALIGSPAK 70
Query: 444 ILA 446
I
Sbjct: 71 IFG 73
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 27.9 bits (63), Expect = 9.4
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 385 VVIGAGGAGKALAYGAKAKGA--RVVIANRTYDRARELAETVGGHALSLADLENFNPEDG 442
+IG G G A+A+G A+G V D + + D G
Sbjct: 5 GIIGLGNVGAAVAHGLIAQGVADDYVF----IDANEAKVK---ADQIDFQDAMANLEAHG 57
Query: 443 MILANT 448
I+ N
Sbjct: 58 NIVIND 63
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 28.2 bits (63), Expect = 9.5
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 385 VVIGAGGAGKALAYGAKAKGARVVI 409
+V+G G +G A G +V++
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLL 29
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.50A {Thermotoga maritima}
SCOP: c.129.1.1
Length = 195
Score = 27.7 bits (62), Expect = 9.8
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 375 VSSALAGKLFVVIGAGGAG--KALAYGAKAKGARVV 408
+ LA K ++V G G + ++ G + G VV
Sbjct: 50 LGRTLAKKGYLVFNGGRDGVMELVSQGVREAGGTVV 85
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 27.9 bits (63), Expect = 9.8
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 7/61 (11%)
Query: 372 SGGVSSALA--GKLF--VVIG-AGGAGKALAYGAKAKGARVVIANRTYDRARELAETVGG 426
+ A ++ +I GA VI T + E G
Sbjct: 154 GSAIGHLFAQLSQILNFRLIAVTRNNKHTEE--LLRLGAAYVIDTSTAPLYETVMELTNG 211
Query: 427 H 427
Sbjct: 212 I 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.406
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,693,357
Number of extensions: 636249
Number of successful extensions: 3043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2858
Number of HSP's successfully gapped: 518
Length of query: 616
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 517
Effective length of database: 3,937,614
Effective search space: 2035746438
Effective search space used: 2035746438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)