Query 007152
Match_columns 616
No_of_seqs 236 out of 2477
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 19:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 1E-120 3E-125 972.4 69.1 581 22-611 126-707 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2E-111 4E-116 939.4 73.7 568 30-608 141-708 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 2E-107 4E-112 917.7 72.8 577 27-609 648-1226(1228)
4 PRK11174 cysteine/glutathione 100.0 2E-104 5E-109 892.2 77.0 570 30-611 9-587 (588)
5 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3E-101 7E-106 880.0 79.5 564 29-608 121-685 (686)
6 COG1132 MdlB ABC-type multidru 100.0 7E-101 1E-105 859.8 77.0 563 31-610 4-566 (567)
7 TIGR01193 bacteriocin_ABC ABC- 100.0 7E-101 1E-105 880.4 76.9 565 29-606 142-707 (708)
8 TIGR00958 3a01208 Conjugate Tr 100.0 1E-100 3E-105 874.7 77.3 566 28-605 146-711 (711)
9 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1E-100 2E-105 879.9 76.0 564 29-605 140-709 (710)
10 PRK11176 lipid transporter ATP 100.0 1.2E-99 3E-104 853.6 79.2 569 30-609 12-580 (582)
11 TIGR03375 type_I_sec_LssB type 100.0 1.8E-99 4E-104 866.8 76.7 557 29-597 133-689 (694)
12 PRK11160 cysteine/glutathione 100.0 1.6E-98 3E-103 839.5 77.3 568 31-607 4-573 (574)
13 PTZ00265 multidrug resistance 100.0 7.1E-99 2E-103 905.2 78.0 568 30-608 812-1465(1466)
14 TIGR01846 type_I_sec_HlyB type 100.0 4.7E-98 1E-102 854.5 78.7 569 29-609 125-693 (694)
15 COG4988 CydD ABC-type transpor 100.0 3.9E-98 8E-103 786.5 71.6 552 47-610 4-557 (559)
16 KOG0055 Multidrug/pheromone ex 100.0 5E-100 1E-104 857.2 56.2 576 29-610 13-590 (1228)
17 PRK10790 putative multidrug tr 100.0 3.1E-97 7E-102 834.8 78.8 568 30-611 10-578 (592)
18 TIGR02203 MsbA_lipidA lipid A 100.0 4.6E-97 1E-101 831.6 78.1 569 31-610 2-570 (571)
19 PRK13657 cyclic beta-1,2-gluca 100.0 7.5E-96 2E-100 822.4 78.9 565 31-609 7-571 (588)
20 TIGR01192 chvA glucan exporter 100.0 8.1E-95 1.7E-99 810.6 79.2 565 31-609 7-571 (585)
21 TIGR02204 MsbA_rel ABC transpo 100.0 6.7E-95 1.4E-99 814.6 78.3 569 31-608 6-575 (576)
22 KOG0057 Mitochondrial Fe/S clu 100.0 6.3E-96 1E-100 757.0 61.0 556 45-610 32-588 (591)
23 TIGR02868 CydC thiol reductant 100.0 3.5E-95 8E-100 808.0 71.4 525 32-568 2-529 (529)
24 COG4987 CydC ABC-type transpor 100.0 4E-95 9E-100 750.6 65.3 562 36-607 9-572 (573)
25 PRK10789 putative multidrug tr 100.0 3.8E-94 8.2E-99 804.0 74.8 549 51-610 3-552 (569)
26 KOG0056 Heavy metal exporter H 100.0 1.2E-97 3E-102 752.7 39.5 552 45-610 217-776 (790)
27 TIGR02857 CydD thiol reductant 100.0 7.2E-92 1.6E-96 781.4 72.4 528 41-580 1-529 (529)
28 TIGR01842 type_I_sec_PrtD type 100.0 9E-91 2E-95 773.8 74.4 541 39-597 2-543 (544)
29 TIGR00957 MRP_assoc_pro multi 100.0 3.6E-91 7.9E-96 847.3 74.7 564 30-607 951-1519(1522)
30 PTZ00265 multidrug resistance 100.0 1.1E-89 2.4E-94 825.8 77.6 569 29-609 45-729 (1466)
31 PLN03130 ABC transporter C fam 100.0 1.3E-89 2.9E-94 832.4 76.3 564 30-609 900-1475(1622)
32 PTZ00243 ABC transporter; Prov 100.0 1.6E-88 3.5E-93 822.0 76.0 503 105-610 1012-1548(1560)
33 COG5265 ATM1 ABC-type transpor 100.0 3.2E-91 6.9E-96 699.7 41.0 492 112-606 3-496 (497)
34 PLN03232 ABC transporter C fam 100.0 3.3E-88 7.2E-93 820.4 73.5 510 94-610 953-1473(1495)
35 COG4618 ArpD ABC-type protease 100.0 2E-86 4.4E-91 679.4 54.6 544 37-597 17-561 (580)
36 TIGR01271 CFTR_protein cystic 100.0 1.5E-84 3.2E-89 787.3 75.2 503 102-611 936-1455(1490)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.5E-84 3.3E-89 723.9 69.1 533 30-588 4-551 (555)
38 PLN03232 ABC transporter C fam 100.0 2.2E-84 4.8E-89 787.0 73.9 546 37-609 295-841 (1495)
39 PLN03130 ABC transporter C fam 100.0 6.9E-84 1.5E-88 782.5 75.6 545 37-609 295-841 (1622)
40 KOG0054 Multidrug resistance-a 100.0 2.6E-84 5.6E-89 747.0 61.2 572 27-609 799-1376(1381)
41 KOG0054 Multidrug resistance-a 100.0 7.8E-83 1.7E-87 734.8 66.0 549 36-608 194-743 (1381)
42 PRK10522 multidrug transporter 100.0 7.5E-79 1.6E-83 678.1 68.7 531 34-598 4-541 (547)
43 TIGR00957 MRP_assoc_pro multi 100.0 3.8E-77 8.3E-82 724.8 75.8 547 36-608 310-862 (1522)
44 TIGR00954 3a01203 Peroxysomal 100.0 6.4E-74 1.4E-78 647.2 65.0 530 30-582 78-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 3.7E-73 8.1E-78 687.9 74.1 539 38-606 75-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 3.7E-71 8.1E-76 670.7 72.6 548 34-607 235-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.5E-57 3.2E-62 460.1 28.1 236 369-608 2-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 1.8E-54 3.9E-59 401.5 22.8 217 369-599 2-228 (240)
49 PRK14257 phosphate ABC transpo 100.0 1.6E-53 3.5E-58 441.6 27.4 226 366-599 77-316 (329)
50 COG4178 ABC-type uncharacteriz 100.0 1.7E-49 3.6E-54 425.7 55.5 501 54-582 58-588 (604)
51 cd03252 ABCC_Hemolysin The ABC 100.0 1.1E-52 2.3E-57 419.2 28.4 236 370-607 1-236 (237)
52 COG1135 AbcC ABC-type metal io 100.0 6.1E-53 1.3E-57 410.9 21.4 218 370-598 2-233 (339)
53 COG4615 PvdE ABC-type sideroph 100.0 3.8E-49 8.2E-54 392.2 47.9 521 34-589 4-530 (546)
54 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-51 4E-56 414.6 29.1 241 365-608 15-256 (257)
55 COG1125 OpuBA ABC-type proline 100.0 6.2E-52 1.3E-56 391.9 20.1 214 370-598 2-227 (309)
56 cd03253 ABCC_ATM1_transporter 100.0 5.7E-51 1.2E-55 406.6 28.0 235 370-607 1-235 (236)
57 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-51 1.1E-55 406.5 27.3 233 370-604 1-233 (234)
58 COG1117 PstB ABC-type phosphat 100.0 7.5E-52 1.6E-56 382.0 18.1 220 369-598 7-239 (253)
59 cd03254 ABCC_Glucan_exporter_l 100.0 1.1E-50 2.5E-55 402.5 27.1 227 369-598 2-228 (229)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.8E-50 3.9E-55 403.4 27.5 236 370-606 1-236 (238)
61 cd03244 ABCC_MRP_domain2 Domai 100.0 2E-50 4.4E-55 398.5 26.9 219 369-590 2-220 (221)
62 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-49 3.3E-54 392.0 27.1 219 369-589 2-220 (220)
63 TIGR02314 ABC_MetN D-methionin 100.0 1.2E-49 2.5E-54 413.3 26.1 226 370-606 2-242 (343)
64 COG1120 FepC ABC-type cobalami 100.0 5.4E-50 1.2E-54 391.3 21.9 215 369-597 2-229 (258)
65 PRK13631 cbiO cobalt transport 100.0 4.7E-49 1E-53 407.1 27.3 223 368-597 20-266 (320)
66 COG1136 SalX ABC-type antimicr 100.0 4E-49 8.7E-54 377.8 24.6 207 370-587 2-222 (226)
67 cd03261 ABC_Org_Solvent_Resist 100.0 2.6E-49 5.7E-54 394.1 24.3 219 370-602 1-232 (235)
68 COG3840 ThiQ ABC-type thiamine 100.0 5.5E-49 1.2E-53 353.5 20.5 212 370-599 2-222 (231)
69 COG3839 MalK ABC-type sugar tr 100.0 8.4E-49 1.8E-53 397.4 23.8 214 369-598 3-225 (338)
70 cd03260 ABC_PstB_phosphate_tra 100.0 1E-48 2.2E-53 387.8 23.3 213 370-594 1-227 (227)
71 cd03248 ABCC_TAP TAP, the Tran 100.0 1.8E-48 3.9E-53 385.9 24.6 218 367-585 9-226 (226)
72 COG1124 DppF ABC-type dipeptid 100.0 1.2E-48 2.6E-53 370.4 21.7 224 369-603 3-239 (252)
73 PRK13650 cbiO cobalt transport 100.0 2.7E-48 5.8E-53 395.8 26.1 218 369-597 4-230 (279)
74 COG1122 CbiO ABC-type cobalt t 100.0 9.1E-49 2E-53 383.2 21.4 217 369-598 3-230 (235)
75 COG1127 Ttg2A ABC-type transpo 100.0 2E-48 4.4E-53 366.7 22.5 225 368-606 7-246 (263)
76 COG1116 TauB ABC-type nitrate/ 100.0 1.5E-48 3.3E-53 373.5 21.8 199 369-586 3-212 (248)
77 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.7E-48 1E-52 375.6 23.7 211 369-597 4-228 (254)
78 PRK14269 phosphate ABC transpo 100.0 5.6E-48 1.2E-52 387.0 25.0 219 369-597 2-231 (246)
79 PRK11153 metN DL-methionine tr 100.0 8.1E-48 1.8E-52 402.3 25.9 217 370-597 2-231 (343)
80 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.3E-47 9.4E-52 385.1 30.4 241 342-605 15-256 (282)
81 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.1E-47 4.5E-52 373.0 26.0 203 368-591 5-207 (207)
82 PRK14250 phosphate ABC transpo 100.0 2.1E-47 4.5E-52 381.6 26.5 223 369-605 3-231 (241)
83 cd03263 ABC_subfamily_A The AB 100.0 1.2E-47 2.6E-52 378.4 23.9 212 370-594 1-219 (220)
84 PRK13635 cbiO cobalt transport 100.0 1.5E-47 3.2E-52 390.1 25.2 217 369-597 5-230 (279)
85 TIGR00960 3a0501s02 Type II (G 100.0 6.4E-48 1.4E-52 379.2 21.7 204 370-585 2-216 (216)
86 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-47 3E-52 382.1 24.1 214 370-597 1-233 (236)
87 cd03256 ABC_PhnC_transporter A 100.0 1.6E-47 3.6E-52 382.9 24.6 214 370-596 1-234 (241)
88 PRK13647 cbiO cobalt transport 100.0 1.8E-47 3.9E-52 388.7 25.2 214 369-595 4-226 (274)
89 PRK13637 cbiO cobalt transport 100.0 2.2E-47 4.7E-52 390.5 25.8 218 370-596 3-234 (287)
90 COG2884 FtsE Predicted ATPase 100.0 5.2E-48 1.1E-52 350.2 18.7 209 370-591 2-221 (223)
91 PRK13643 cbiO cobalt transport 100.0 2.3E-47 5.1E-52 390.4 25.2 216 370-596 2-233 (288)
92 PRK11650 ugpC glycerol-3-phosp 100.0 3.1E-47 6.7E-52 398.5 26.5 215 369-598 3-226 (356)
93 PRK14273 phosphate ABC transpo 100.0 2.3E-47 5E-52 384.6 24.3 219 369-597 7-239 (254)
94 PRK14242 phosphate transporter 100.0 2.5E-47 5.5E-52 384.1 24.5 219 369-597 6-238 (253)
95 cd03296 ABC_CysA_sulfate_impor 100.0 2.2E-47 4.7E-52 381.2 23.7 212 370-597 3-227 (239)
96 TIGR00972 3a0107s01c2 phosphat 100.0 3.2E-47 6.9E-52 381.9 24.9 218 370-597 2-233 (247)
97 PRK11432 fbpC ferric transport 100.0 2.9E-47 6.3E-52 397.5 25.5 214 369-598 6-228 (351)
98 TIGR02315 ABC_phnC phosphonate 100.0 2.8E-47 6.2E-52 381.6 24.3 213 370-595 2-234 (243)
99 PRK13642 cbiO cobalt transport 100.0 4.8E-47 1E-51 386.4 26.4 219 369-598 4-231 (277)
100 PRK13646 cbiO cobalt transport 100.0 3.8E-47 8.3E-52 388.7 25.0 217 370-597 3-236 (286)
101 PRK11629 lolD lipoprotein tran 100.0 4.7E-47 1E-51 377.3 24.8 211 369-590 5-228 (233)
102 cd03258 ABC_MetN_methionine_tr 100.0 4.8E-47 1E-51 377.5 24.6 216 370-596 2-230 (233)
103 cd03250 ABCC_MRP_domain1 Domai 100.0 5.1E-47 1.1E-51 369.4 24.2 200 370-584 1-204 (204)
104 COG3842 PotA ABC-type spermidi 100.0 1.7E-47 3.8E-52 389.9 21.7 215 368-598 4-228 (352)
105 PRK10744 pstB phosphate transp 100.0 6.6E-47 1.4E-51 382.3 25.8 220 368-597 12-245 (260)
106 cd03259 ABC_Carb_Solutes_like 100.0 2.5E-47 5.4E-52 374.2 21.8 204 370-589 1-213 (213)
107 PRK13636 cbiO cobalt transport 100.0 5.1E-47 1.1E-51 387.2 24.9 216 369-597 5-232 (283)
108 PRK13632 cbiO cobalt transport 100.0 6.1E-47 1.3E-51 384.6 25.2 217 369-597 7-232 (271)
109 cd03224 ABC_TM1139_LivF_branch 100.0 6E-47 1.3E-51 374.0 24.5 213 370-596 1-221 (222)
110 PRK14235 phosphate transporter 100.0 6.3E-47 1.4E-51 383.6 25.0 220 368-597 18-252 (267)
111 TIGR01186 proV glycine betaine 100.0 4.2E-47 9.2E-52 396.2 24.0 202 385-597 6-220 (363)
112 PRK14267 phosphate ABC transpo 100.0 6.4E-47 1.4E-51 381.2 24.5 220 369-598 4-239 (253)
113 PRK13634 cbiO cobalt transport 100.0 5.7E-47 1.2E-51 387.9 24.4 218 370-597 3-236 (290)
114 cd03264 ABC_drug_resistance_li 100.0 4.7E-47 1E-51 371.7 22.6 204 370-589 1-211 (211)
115 TIGR03265 PhnT2 putative 2-ami 100.0 7E-47 1.5E-51 395.3 25.1 214 369-598 4-226 (353)
116 PRK13652 cbiO cobalt transport 100.0 1.1E-46 2.3E-51 383.8 25.8 217 369-598 3-229 (277)
117 COG3638 ABC-type phosphate/pho 100.0 4.2E-47 9.1E-52 356.9 20.9 215 369-596 3-237 (258)
118 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-46 3E-51 374.7 25.9 221 370-605 2-232 (236)
119 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 4.3E-47 9.2E-52 374.0 21.8 205 370-585 1-218 (218)
120 PRK09536 btuD corrinoid ABC tr 100.0 9.3E-47 2E-51 398.3 25.8 222 369-605 3-236 (402)
121 PRK13651 cobalt transporter AT 100.0 1E-46 2.2E-51 387.4 25.2 217 370-597 3-255 (305)
122 cd03226 ABC_cobalt_CbiO_domain 100.0 4.6E-47 9.9E-52 370.0 21.3 200 371-586 1-205 (205)
123 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8E-47 1.7E-51 383.1 23.8 219 371-603 26-258 (269)
124 cd03265 ABC_DrrA DrrA is the A 100.0 1E-46 2.2E-51 371.7 23.8 210 370-594 1-219 (220)
125 PRK13640 cbiO cobalt transport 100.0 1.9E-46 4.1E-51 382.8 26.5 216 369-596 5-232 (282)
126 cd03295 ABC_OpuCA_Osmoprotecti 100.0 9.8E-47 2.1E-51 377.2 23.9 217 370-597 1-226 (242)
127 PRK13633 cobalt transporter AT 100.0 1.2E-46 2.7E-51 384.0 25.0 218 369-597 4-234 (280)
128 PRK13648 cbiO cobalt transport 100.0 1.5E-46 3.3E-51 381.4 25.3 218 369-598 7-233 (269)
129 PRK10851 sulfate/thiosulfate t 100.0 1.2E-46 2.7E-51 393.5 25.3 213 370-598 3-228 (353)
130 cd03266 ABC_NatA_sodium_export 100.0 1.3E-46 2.9E-51 370.5 23.9 208 370-589 2-218 (218)
131 TIGR02211 LolD_lipo_ex lipopro 100.0 1.3E-46 2.8E-51 371.3 23.5 206 370-586 2-220 (221)
132 cd03218 ABC_YhbG The ABC trans 100.0 1.6E-46 3.5E-51 373.5 24.1 213 370-596 1-222 (232)
133 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-46 2.7E-51 367.9 22.7 204 370-589 1-208 (208)
134 PRK14247 phosphate ABC transpo 100.0 1.6E-46 3.6E-51 377.6 24.0 219 369-597 3-235 (250)
135 PRK09452 potA putrescine/sperm 100.0 1.7E-46 3.6E-51 394.4 24.8 214 369-598 14-236 (375)
136 TIGR03005 ectoine_ehuA ectoine 100.0 2.2E-46 4.9E-51 376.9 24.7 214 370-597 1-237 (252)
137 PRK10575 iron-hydroxamate tran 100.0 2.1E-46 4.5E-51 379.6 24.5 222 369-605 11-245 (265)
138 TIGR03258 PhnT 2-aminoethylpho 100.0 1.8E-46 3.9E-51 392.7 24.7 216 367-598 3-230 (362)
139 PRK11831 putative ABC transpor 100.0 2.8E-46 6E-51 379.3 25.4 224 369-606 7-244 (269)
140 TIGR03411 urea_trans_UrtD urea 100.0 3.2E-46 6.9E-51 373.7 25.4 214 369-596 2-231 (242)
141 PRK11231 fecE iron-dicitrate t 100.0 1.8E-46 3.8E-51 378.2 23.6 222 370-606 3-236 (255)
142 PRK14251 phosphate ABC transpo 100.0 2.3E-46 4.9E-51 376.8 24.3 220 369-598 4-237 (251)
143 PRK11000 maltose/maltodextrin 100.0 2.4E-46 5.2E-51 394.4 25.6 213 369-597 3-224 (369)
144 PRK15079 oligopeptide ABC tran 100.0 2.6E-46 5.6E-51 388.1 25.3 224 369-603 8-259 (331)
145 PRK13644 cbiO cobalt transport 100.0 3.5E-46 7.7E-51 379.2 25.7 215 370-597 2-225 (274)
146 PRK14236 phosphate transporter 100.0 3.5E-46 7.6E-51 379.2 25.6 221 367-597 23-257 (272)
147 PRK14245 phosphate ABC transpo 100.0 2E-46 4.4E-51 376.8 23.6 219 369-597 3-235 (250)
148 PRK14274 phosphate ABC transpo 100.0 2.7E-46 5.8E-51 377.8 24.5 219 369-597 12-244 (259)
149 cd03301 ABC_MalK_N The N-termi 100.0 1.6E-46 3.5E-51 368.5 22.2 204 370-589 1-213 (213)
150 PRK10247 putative ABC transpor 100.0 2.4E-46 5.2E-51 370.0 23.4 211 369-592 7-223 (225)
151 PRK14237 phosphate transporter 100.0 4.1E-46 9E-51 377.6 25.7 221 367-597 18-252 (267)
152 PRK14240 phosphate transporter 100.0 3.9E-46 8.4E-51 374.9 25.2 220 368-597 2-235 (250)
153 PRK14268 phosphate ABC transpo 100.0 2.7E-46 5.8E-51 377.4 24.1 219 369-597 12-243 (258)
154 PRK11124 artP arginine transpo 100.0 4E-46 8.6E-51 372.9 25.0 214 370-597 3-231 (242)
155 PRK09493 glnQ glutamine ABC tr 100.0 3.1E-46 6.7E-51 373.2 24.0 214 370-597 2-226 (240)
156 cd03225 ABC_cobalt_CbiO_domain 100.0 1.7E-46 3.7E-51 367.8 21.7 202 371-584 1-211 (211)
157 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.3E-46 5E-51 369.2 22.7 207 370-592 1-219 (220)
158 PRK14239 phosphate transporter 100.0 4.1E-46 9E-51 375.2 24.8 219 369-597 5-237 (252)
159 PRK11264 putative amino-acid A 100.0 5.5E-46 1.2E-50 373.8 25.6 215 369-597 3-234 (250)
160 PRK11247 ssuB aliphatic sulfon 100.0 5.2E-46 1.1E-50 373.4 25.2 206 369-594 12-221 (257)
161 PRK13638 cbiO cobalt transport 100.0 4E-46 8.6E-51 378.8 24.6 214 370-597 2-226 (271)
162 cd03247 ABCC_cytochrome_bd The 100.0 2.6E-46 5.6E-51 356.2 21.7 178 370-589 1-178 (178)
163 cd03290 ABCC_SUR1_N The SUR do 100.0 5.2E-46 1.1E-50 366.1 24.5 210 371-584 2-218 (218)
164 PRK14244 phosphate ABC transpo 100.0 2.1E-46 4.5E-51 376.9 22.2 218 370-597 6-238 (251)
165 PRK14248 phosphate ABC transpo 100.0 5.8E-46 1.3E-50 377.1 25.3 219 369-597 21-253 (268)
166 PRK10619 histidine/lysine/argi 100.0 6.8E-46 1.5E-50 374.4 25.6 217 368-597 4-242 (257)
167 TIGR02673 FtsE cell division A 100.0 2.8E-46 6.1E-51 367.1 22.0 202 370-584 2-214 (214)
168 cd03292 ABC_FtsE_transporter F 100.0 3.5E-46 7.6E-51 366.4 22.6 203 370-585 1-214 (214)
169 PRK13537 nodulation ABC transp 100.0 5.3E-46 1.1E-50 382.9 24.7 214 369-597 7-228 (306)
170 PRK13649 cbiO cobalt transport 100.0 6.1E-46 1.3E-50 379.4 25.0 218 370-597 3-235 (280)
171 PRK13548 hmuV hemin importer A 100.0 1.3E-45 2.9E-50 372.0 27.0 215 369-597 2-231 (258)
172 TIGR03410 urea_trans_UrtE urea 100.0 3E-46 6.6E-51 370.9 22.0 212 370-594 1-219 (230)
173 TIGR02769 nickel_nikE nickel i 100.0 1E-45 2.2E-50 374.6 26.1 226 370-605 3-250 (265)
174 PRK10584 putative ABC transpor 100.0 8.4E-46 1.8E-50 367.3 24.9 209 369-588 6-227 (228)
175 PRK14259 phosphate ABC transpo 100.0 1E-45 2.3E-50 374.9 25.9 220 368-597 12-254 (269)
176 PRK13645 cbiO cobalt transport 100.0 8.9E-46 1.9E-50 379.6 25.4 219 368-596 5-240 (289)
177 PRK14262 phosphate ABC transpo 100.0 8E-46 1.7E-50 372.6 24.6 220 369-598 3-236 (250)
178 PRK14249 phosphate ABC transpo 100.0 1E-45 2.2E-50 371.9 25.4 219 369-597 4-236 (251)
179 PRK14256 phosphate ABC transpo 100.0 1E-45 2.2E-50 372.2 25.3 220 368-597 3-237 (252)
180 TIGR03873 F420-0_ABC_ATP propo 100.0 7.7E-46 1.7E-50 373.8 24.5 213 370-596 2-226 (256)
181 PRK11614 livF leucine/isoleuci 100.0 8.9E-46 1.9E-50 369.2 24.6 218 369-596 5-226 (237)
182 PRK13641 cbiO cobalt transport 100.0 1E-45 2.2E-50 378.4 25.5 218 369-597 2-235 (287)
183 PRK10070 glycine betaine trans 100.0 9.9E-46 2.1E-50 390.3 25.9 201 386-597 42-255 (400)
184 cd03235 ABC_Metallic_Cations A 100.0 3.2E-46 6.9E-51 366.4 20.3 199 371-589 1-213 (213)
185 cd03298 ABC_ThiQ_thiamine_tran 100.0 1E-45 2.3E-50 362.2 23.8 202 370-589 1-211 (211)
186 PRK14238 phosphate transporter 100.0 1.1E-45 2.5E-50 375.1 24.8 219 369-597 24-256 (271)
187 PRK14253 phosphate ABC transpo 100.0 1.2E-45 2.6E-50 371.1 24.5 219 369-597 3-234 (249)
188 TIGR01288 nodI ATP-binding ABC 100.0 1.2E-45 2.6E-50 380.8 25.0 214 369-597 4-225 (303)
189 COG1118 CysA ABC-type sulfate/ 100.0 3.2E-46 6.9E-51 362.9 19.4 214 369-598 2-229 (345)
190 PRK14261 phosphate ABC transpo 100.0 1.6E-45 3.5E-50 370.9 25.3 220 369-598 6-239 (253)
191 PRK14270 phosphate ABC transpo 100.0 1.5E-45 3.3E-50 370.7 25.1 219 369-597 4-236 (251)
192 PRK11300 livG leucine/isoleuci 100.0 1.5E-45 3.3E-50 371.8 25.0 215 369-597 5-244 (255)
193 cd03246 ABCC_Protease_Secretio 100.0 9.5E-46 2.1E-50 350.5 21.9 172 370-585 1-173 (173)
194 cd03300 ABC_PotA_N PotA is an 100.0 8.3E-46 1.8E-50 368.0 22.4 212 370-597 1-221 (232)
195 PRK10771 thiQ thiamine transpo 100.0 2.6E-45 5.6E-50 364.6 25.9 211 370-598 2-221 (232)
196 PRK15112 antimicrobial peptide 100.0 2.3E-45 4.9E-50 372.2 25.9 230 369-609 4-254 (267)
197 PRK13639 cbiO cobalt transport 100.0 1.6E-45 3.6E-50 374.7 25.0 215 370-597 2-227 (275)
198 PRK14271 phosphate ABC transpo 100.0 2.3E-45 5.1E-50 373.3 26.0 220 369-598 21-253 (276)
199 PRK10253 iron-enterobactin tra 100.0 1.7E-45 3.7E-50 372.9 24.8 215 368-596 6-233 (265)
200 TIGR00968 3a0106s01 sulfate AB 100.0 2E-45 4.3E-50 366.4 24.8 211 370-596 1-220 (237)
201 PRK11308 dppF dipeptide transp 100.0 2.9E-45 6.3E-50 379.9 26.9 228 369-606 5-256 (327)
202 PRK11607 potG putrescine trans 100.0 2.1E-45 4.6E-50 386.7 26.1 215 368-598 18-241 (377)
203 PRK14243 phosphate transporter 100.0 2E-45 4.4E-50 372.0 25.0 219 369-597 10-249 (264)
204 PRK10908 cell division protein 100.0 1.7E-45 3.6E-50 363.6 23.8 205 370-587 2-217 (222)
205 TIGR03522 GldA_ABC_ATP gliding 100.0 1.8E-45 3.8E-50 379.0 24.9 213 370-597 3-222 (301)
206 PRK10895 lipopolysaccharide AB 100.0 1.9E-45 4.1E-50 367.8 24.4 215 369-597 3-227 (241)
207 PRK14254 phosphate ABC transpo 100.0 3.3E-45 7.1E-50 373.8 26.6 220 368-597 38-270 (285)
208 PRK14241 phosphate transporter 100.0 1.7E-45 3.7E-50 371.7 23.9 219 369-597 4-243 (258)
209 cd03257 ABC_NikE_OppD_transpor 100.0 3E-45 6.5E-50 363.5 25.2 210 370-589 2-228 (228)
210 PRK14260 phosphate ABC transpo 100.0 2E-45 4.4E-50 371.3 24.0 219 369-597 7-244 (259)
211 cd03269 ABC_putative_ATPase Th 100.0 1.4E-45 3E-50 361.1 21.7 202 370-589 1-210 (210)
212 cd03262 ABC_HisP_GlnQ_permease 100.0 1.3E-45 2.7E-50 362.2 21.4 202 370-585 1-213 (213)
213 PRK14275 phosphate ABC transpo 100.0 3.8E-45 8.3E-50 373.7 25.5 220 368-597 38-271 (286)
214 PRK09984 phosphonate/organopho 100.0 4.8E-45 1E-49 369.3 25.8 227 369-611 4-255 (262)
215 TIGR01978 sufC FeS assembly AT 100.0 2.5E-45 5.5E-50 367.5 23.4 214 370-595 1-233 (243)
216 TIGR03415 ABC_choXWV_ATP choli 100.0 2.3E-45 4.9E-50 384.8 23.8 202 385-597 37-255 (382)
217 PRK14266 phosphate ABC transpo 100.0 4.2E-45 9E-50 367.4 24.5 219 369-597 3-235 (250)
218 PRK14252 phosphate ABC transpo 100.0 4.5E-45 9.9E-50 370.0 24.8 221 367-597 14-250 (265)
219 PRK14272 phosphate ABC transpo 100.0 3.1E-45 6.7E-50 368.8 23.4 219 369-597 4-237 (252)
220 PRK14263 phosphate ABC transpo 100.0 5.9E-45 1.3E-49 367.6 25.4 220 369-598 8-247 (261)
221 PRK13536 nodulation factor exp 100.0 4.1E-45 8.8E-50 380.1 24.8 214 369-597 41-262 (340)
222 TIGR01277 thiQ thiamine ABC tr 100.0 5.5E-45 1.2E-49 357.4 24.1 203 370-590 1-212 (213)
223 PRK14264 phosphate ABC transpo 100.0 7.1E-45 1.5E-49 374.9 25.9 220 368-597 44-290 (305)
224 PRK14258 phosphate ABC transpo 100.0 5.7E-45 1.2E-49 368.2 24.7 220 368-597 6-246 (261)
225 PRK11022 dppD dipeptide transp 100.0 5.6E-45 1.2E-49 378.0 25.1 227 369-603 3-251 (326)
226 PRK11144 modC molybdate transp 100.0 6E-45 1.3E-49 382.0 25.2 211 370-598 2-220 (352)
227 PRK13547 hmuV hemin importer A 100.0 8.4E-45 1.8E-49 367.7 25.4 213 370-596 2-244 (272)
228 PRK09473 oppD oligopeptide tra 100.0 8.1E-45 1.8E-49 377.1 25.4 230 369-606 12-263 (330)
229 cd03299 ABC_ModC_like Archeal 100.0 8.4E-45 1.8E-49 361.4 24.4 211 370-597 1-220 (235)
230 PRK14246 phosphate ABC transpo 100.0 8.5E-45 1.8E-49 365.6 24.7 227 369-605 10-251 (257)
231 TIGR01188 drrA daunorubicin re 100.0 5.2E-45 1.1E-49 375.9 23.0 201 385-597 6-214 (302)
232 PRK14255 phosphate ABC transpo 100.0 8.9E-45 1.9E-49 365.4 24.2 220 369-598 5-238 (252)
233 PRK14265 phosphate ABC transpo 100.0 1.7E-44 3.6E-49 366.9 26.3 220 368-597 19-259 (274)
234 PRK11701 phnK phosphonate C-P 100.0 2.4E-44 5.2E-49 363.3 26.1 227 369-604 6-250 (258)
235 PRK15093 antimicrobial peptide 100.0 2E-44 4.4E-49 375.1 25.9 225 369-604 3-257 (330)
236 PRK10419 nikE nickel transport 100.0 1.4E-44 3.1E-49 366.5 23.7 226 369-605 3-250 (268)
237 TIGR02982 heterocyst_DevA ABC 100.0 1.6E-44 3.5E-49 355.9 23.3 205 370-585 2-219 (220)
238 PRK11248 tauB taurine transpor 100.0 2.5E-44 5.4E-49 361.8 24.0 203 370-591 2-215 (255)
239 PRK10418 nikD nickel transport 100.0 5.2E-44 1.1E-48 359.9 25.9 226 369-609 4-245 (254)
240 COG1131 CcmA ABC-type multidru 100.0 3.1E-44 6.8E-49 366.2 24.2 215 369-597 4-227 (293)
241 cd03234 ABCG_White The White s 100.0 1.2E-44 2.6E-49 358.4 20.5 206 370-589 4-226 (226)
242 TIGR02142 modC_ABC molybdenum 100.0 3.3E-44 7.2E-49 377.0 24.6 208 374-598 4-223 (354)
243 TIGR03740 galliderm_ABC gallid 100.0 6.6E-44 1.4E-48 352.4 24.6 206 370-593 1-210 (223)
244 cd03228 ABCC_MRP_Like The MRP 100.0 5E-44 1.1E-48 338.1 21.5 171 370-584 1-171 (171)
245 cd03230 ABC_DR_subfamily_A Thi 100.0 4.2E-44 9.2E-49 339.3 21.0 170 370-585 1-173 (173)
246 cd03229 ABC_Class3 This class 100.0 4.1E-44 9E-49 340.9 21.0 172 370-584 1-178 (178)
247 cd03233 ABC_PDR_domain1 The pl 100.0 7.8E-44 1.7E-48 345.8 22.2 191 369-589 3-202 (202)
248 KOG0060 Long-chain acyl-CoA tr 100.0 1.2E-40 2.6E-45 346.8 46.7 472 98-582 129-641 (659)
249 cd03297 ABC_ModC_molybdenum_tr 100.0 1E-43 2.2E-48 348.7 22.3 201 371-589 3-214 (214)
250 TIGR02323 CP_lyasePhnK phospho 100.0 2.9E-43 6.2E-48 354.7 25.8 216 369-597 3-239 (253)
251 PRK15056 manganese/iron transp 100.0 1.7E-43 3.7E-48 359.5 23.7 210 369-596 6-230 (272)
252 PRK09544 znuC high-affinity zi 100.0 2.9E-43 6.3E-48 352.8 24.9 208 369-605 4-217 (251)
253 TIGR03608 L_ocin_972_ABC putat 100.0 1E-43 2.2E-48 346.8 20.3 195 372-580 1-206 (206)
254 CHL00131 ycf16 sulfate ABC tra 100.0 3.7E-43 7.9E-48 353.8 24.7 213 369-594 7-239 (252)
255 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-43 4.1E-48 340.9 21.6 183 369-589 3-194 (194)
256 cd03232 ABC_PDR_domain2 The pl 100.0 1.5E-43 3.2E-48 341.2 20.8 182 369-589 3-192 (192)
257 PRK09580 sufC cysteine desulfu 100.0 2.5E-43 5.3E-48 354.2 22.7 214 370-595 2-234 (248)
258 COG0410 LivF ABC-type branched 100.0 3.5E-43 7.7E-48 330.9 22.0 222 369-599 3-229 (237)
259 cd03223 ABCD_peroxisomal_ALDP 100.0 3.1E-43 6.7E-48 330.6 21.1 164 370-584 1-164 (166)
260 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.9E-43 1.1E-47 339.9 22.7 185 370-595 1-192 (200)
261 cd03215 ABC_Carb_Monos_II This 100.0 2.9E-43 6.2E-48 336.4 20.5 172 369-585 4-182 (182)
262 cd03214 ABC_Iron-Siderophores_ 100.0 3.3E-43 7.1E-48 335.4 20.3 177 371-589 1-180 (180)
263 PRK03695 vitamin B12-transport 100.0 1.1E-42 2.4E-47 348.7 24.9 217 370-606 1-231 (248)
264 COG4175 ProV ABC-type proline/ 100.0 2.7E-43 5.8E-48 342.6 18.7 219 369-598 4-256 (386)
265 cd03231 ABC_CcmA_heme_exporter 100.0 1.4E-42 2.9E-47 337.1 22.9 195 370-580 1-198 (201)
266 TIGR01184 ntrCD nitrate transp 100.0 1.9E-42 4.1E-47 343.2 23.6 192 388-595 1-203 (230)
267 PRK15439 autoinducer 2 ABC tra 100.0 2E-42 4.3E-47 381.9 26.3 214 369-596 11-229 (510)
268 PRK13540 cytochrome c biogenes 100.0 1.3E-42 2.8E-47 337.1 21.5 195 370-579 2-198 (200)
269 TIGR02770 nickel_nikD nickel i 100.0 1.4E-42 3.1E-47 344.3 21.8 201 387-597 1-216 (230)
270 COG4619 ABC-type uncharacteriz 100.0 5.4E-43 1.2E-47 310.6 15.7 204 371-587 5-214 (223)
271 PRK13538 cytochrome c biogenes 100.0 2.8E-42 6E-47 335.9 21.8 196 370-580 2-202 (204)
272 cd03216 ABC_Carb_Monos_I This 100.0 4E-42 8.6E-47 322.1 22.0 159 370-587 1-162 (163)
273 PRK13549 xylose transporter AT 100.0 1.6E-42 3.5E-47 382.8 22.7 213 369-595 5-231 (506)
274 PRK10261 glutathione transport 100.0 3.7E-42 8.1E-47 387.3 26.0 227 369-606 313-565 (623)
275 COG1123 ATPase components of v 100.0 3.6E-42 7.8E-47 364.9 23.6 229 368-607 279-531 (539)
276 PRK09700 D-allose transporter 100.0 2.3E-42 5E-47 382.2 23.0 214 369-596 5-234 (510)
277 COG4555 NatA ABC-type Na+ tran 100.0 5.4E-43 1.2E-47 320.2 14.3 215 370-598 2-224 (245)
278 cd03267 ABC_NatA_like Similar 100.0 3.9E-42 8.5E-47 342.3 21.4 193 385-589 34-236 (236)
279 PRK10762 D-ribose transporter 100.0 5.1E-42 1.1E-46 378.3 24.3 213 369-595 4-229 (501)
280 PRK10938 putative molybdenum t 100.0 9E-42 1.9E-46 375.8 24.3 212 369-597 3-225 (490)
281 TIGR01189 ccmA heme ABC export 100.0 7.5E-42 1.6E-46 331.3 20.7 194 370-579 1-197 (198)
282 PRK13543 cytochrome c biogenes 100.0 1.5E-41 3.1E-46 333.2 22.9 197 369-582 11-212 (214)
283 PRK11288 araG L-arabinose tran 100.0 7.9E-42 1.7E-46 376.8 23.2 208 369-590 4-223 (501)
284 PRK13539 cytochrome c biogenes 100.0 1.4E-41 3.1E-46 331.5 22.2 195 370-582 3-200 (207)
285 COG0444 DppD ABC-type dipeptid 100.0 1.7E-41 3.7E-46 336.0 22.7 226 370-606 2-255 (316)
286 PRK10982 galactose/methyl gala 100.0 1.3E-41 2.7E-46 374.5 23.5 210 372-595 1-222 (491)
287 PRK15134 microcin C ABC transp 100.0 1.1E-41 2.4E-46 378.1 23.2 217 369-597 275-516 (529)
288 PRK15134 microcin C ABC transp 100.0 2.5E-41 5.5E-46 375.2 25.4 221 369-597 5-247 (529)
289 PRK10261 glutathione transport 100.0 1.8E-41 3.9E-46 381.7 24.4 221 369-597 12-259 (623)
290 PRK13546 teichoic acids export 100.0 2.3E-41 5.1E-46 340.8 22.7 215 369-607 4-243 (264)
291 PLN03211 ABC transporter G-25; 100.0 2.8E-41 6.1E-46 379.6 25.7 201 385-596 81-296 (659)
292 TIGR02324 CP_lyasePhnL phospho 100.0 2.2E-41 4.8E-46 334.7 21.7 201 370-580 2-222 (224)
293 PRK13545 tagH teichoic acids e 100.0 5.5E-41 1.2E-45 357.3 25.1 213 369-605 21-241 (549)
294 PRK10535 macrolide transporter 100.0 6E-41 1.3E-45 378.8 26.3 216 369-595 4-231 (648)
295 TIGR03771 anch_rpt_ABC anchore 100.0 2.4E-41 5.2E-46 333.7 19.9 195 393-605 1-209 (223)
296 COG1123 ATPase components of v 100.0 3.7E-41 8.1E-46 357.1 22.8 224 369-603 5-252 (539)
297 TIGR02633 xylG D-xylose ABC tr 100.0 3.1E-41 6.6E-46 372.5 23.0 212 370-594 2-228 (500)
298 TIGR03269 met_CoM_red_A2 methy 100.0 4.5E-41 9.8E-46 372.7 23.7 222 369-596 279-517 (520)
299 PRK13541 cytochrome c biogenes 100.0 4.1E-41 8.8E-46 325.3 20.2 190 370-578 2-193 (195)
300 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-41 2.8E-46 382.6 18.8 217 369-596 17-256 (617)
301 COG0411 LivG ABC-type branched 100.0 1.5E-41 3.3E-46 322.3 16.3 215 370-598 5-241 (250)
302 COG4559 ABC-type hemin transpo 100.0 9.8E-41 2.1E-45 307.8 21.0 214 370-597 2-231 (259)
303 TIGR01166 cbiO cobalt transpor 100.0 3.2E-41 6.9E-46 324.8 18.6 175 385-570 5-189 (190)
304 TIGR03269 met_CoM_red_A2 methy 100.0 4.2E-41 9.2E-46 372.9 22.2 213 370-596 1-258 (520)
305 COG4181 Predicted ABC-type tra 100.0 4.7E-41 1E-45 299.3 17.8 209 369-588 6-227 (228)
306 COG4608 AppF ABC-type oligopep 100.0 4.3E-41 9.3E-46 326.4 18.8 193 369-603 4-207 (268)
307 PRK13549 xylose transporter AT 100.0 5.5E-41 1.2E-45 370.6 22.0 217 369-595 259-493 (506)
308 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 9.8E-41 2.1E-45 329.4 20.7 195 370-589 23-224 (224)
309 TIGR01257 rim_protein retinal- 100.0 1.4E-38 3.1E-43 383.4 43.5 219 368-599 1936-2162(2272)
310 COG4172 ABC-type uncharacteriz 100.0 3.8E-40 8.2E-45 329.4 24.4 222 368-602 275-523 (534)
311 TIGR00956 3a01205 Pleiotropic 100.0 2.4E-38 5.3E-43 381.5 43.8 213 369-592 759-989 (1394)
312 TIGR01257 rim_protein retinal- 100.0 3.2E-40 7E-45 397.6 26.8 217 368-597 927-1150(2272)
313 COG4598 HisP ABC-type histidin 100.0 6.6E-41 1.4E-45 300.3 15.0 215 369-598 6-243 (256)
314 COG1137 YhbG ABC-type (unclass 100.0 2.1E-41 4.6E-46 309.4 11.7 223 369-598 4-230 (243)
315 PRK09700 D-allose transporter 100.0 2.9E-40 6.2E-45 365.4 22.2 210 369-593 265-495 (510)
316 COG1129 MglA ABC-type sugar tr 100.0 1.1E-39 2.5E-44 343.7 24.6 208 369-590 8-228 (500)
317 TIGR02633 xylG D-xylose ABC tr 100.0 6.8E-40 1.5E-44 361.8 21.7 215 369-593 257-489 (500)
318 PRK15064 ABC transporter ATP-b 100.0 2.9E-39 6.3E-44 358.9 24.4 204 369-599 319-528 (530)
319 TIGR01187 potA spermidine/putr 100.0 1.3E-39 2.9E-44 338.2 19.8 182 403-597 1-191 (325)
320 PRK10762 D-ribose transporter 100.0 2.1E-39 4.6E-44 357.5 21.4 208 369-594 257-482 (501)
321 cd03236 ABC_RNaseL_inhibitor_d 100.0 1E-39 2.2E-44 326.9 17.1 202 373-589 4-220 (255)
322 PRK15064 ABC transporter ATP-b 100.0 3.8E-39 8.3E-44 357.9 23.4 201 370-596 2-242 (530)
323 cd03237 ABC_RNaseL_inhibitor_d 100.0 5.1E-39 1.1E-43 320.7 21.4 194 377-595 1-206 (246)
324 PRK11819 putative ABC transpor 100.0 4.9E-39 1.1E-43 358.3 23.5 210 369-596 6-250 (556)
325 PRK11288 araG L-arabinose tran 100.0 2.6E-39 5.6E-44 356.8 20.9 210 369-595 257-484 (501)
326 COG4148 ModC ABC-type molybdat 100.0 1.8E-39 3.9E-44 310.7 16.5 198 389-598 15-220 (352)
327 COG4525 TauB ABC-type taurine 100.0 2.9E-39 6.3E-44 293.8 16.6 204 370-590 4-218 (259)
328 PRK15177 Vi polysaccharide exp 100.0 5.2E-39 1.1E-43 314.3 19.3 192 387-601 2-197 (213)
329 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.3E-39 1.4E-43 357.4 22.4 210 369-596 4-248 (552)
330 COG4161 ArtP ABC-type arginine 100.0 7.3E-39 1.6E-43 282.2 17.2 213 369-596 2-230 (242)
331 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.2E-38 2.5E-43 292.0 18.8 143 370-584 1-144 (144)
332 PRK15439 autoinducer 2 ABC tra 100.0 7.7E-39 1.7E-43 353.4 20.3 211 369-597 268-493 (510)
333 PRK10938 putative molybdenum t 100.0 2.2E-38 4.8E-43 348.9 20.0 207 368-588 259-484 (490)
334 PRK10982 galactose/methyl gala 100.0 7E-38 1.5E-42 344.8 22.4 209 369-592 250-476 (491)
335 COG4604 CeuD ABC-type enteroch 100.0 2.3E-38 5E-43 288.6 13.3 215 370-598 2-227 (252)
336 COG3845 ABC-type uncharacteriz 100.0 2.3E-37 5.1E-42 319.2 20.7 206 369-588 4-221 (501)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 4.3E-37 9.4E-42 286.7 19.7 155 371-584 1-157 (157)
338 PLN03073 ABC transporter F fam 100.0 7E-37 1.5E-41 345.7 24.7 200 368-594 507-712 (718)
339 PRK11819 putative ABC transpor 100.0 6.6E-37 1.4E-41 341.2 24.1 203 369-597 324-534 (556)
340 PRK10636 putative ABC transpor 100.0 1.4E-36 3.1E-41 342.3 27.0 200 368-595 311-516 (638)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.2E-37 2E-41 340.0 24.1 202 369-596 322-531 (552)
342 PLN03140 ABC transporter G fam 100.0 9.4E-37 2E-41 366.4 25.8 214 369-592 867-1106(1470)
343 PRK11147 ABC transporter ATPas 100.0 1.4E-36 3E-41 343.2 24.7 201 369-596 319-528 (635)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 6.6E-37 1.4E-41 288.4 17.5 145 373-586 4-151 (177)
345 PRK13409 putative ATPase RIL; 100.0 1.3E-36 2.8E-41 337.9 22.3 192 369-590 340-536 (590)
346 COG1101 PhnK ABC-type uncharac 100.0 4.2E-37 9.1E-42 284.4 14.3 204 384-589 18-231 (263)
347 cd03238 ABC_UvrA The excision 100.0 5.2E-36 1.1E-40 282.0 18.7 156 384-584 7-165 (176)
348 PRK10636 putative ABC transpor 100.0 1E-35 2.2E-40 335.3 23.9 201 370-596 2-236 (638)
349 KOG0064 Peroxisomal long-chain 100.0 3.7E-32 7.9E-37 279.5 46.9 505 45-581 120-682 (728)
350 TIGR00956 3a01205 Pleiotropic 100.0 1.8E-35 3.9E-40 356.7 21.2 203 385-595 74-299 (1394)
351 PRK11147 ABC transporter ATPas 100.0 5.9E-35 1.3E-39 329.9 24.0 199 369-596 3-243 (635)
352 COG4172 ABC-type uncharacteriz 100.0 4.7E-35 1E-39 293.0 19.0 226 369-605 6-257 (534)
353 COG1119 ModF ABC-type molybden 100.0 6.6E-35 1.4E-39 277.0 18.7 209 368-590 30-256 (257)
354 PLN03140 ABC transporter G fam 100.0 3.5E-35 7.7E-40 352.8 18.6 209 385-596 178-427 (1470)
355 COG4136 ABC-type uncharacteriz 100.0 7.8E-35 1.7E-39 253.9 15.6 196 369-580 2-207 (213)
356 PRK13409 putative ATPase RIL; 100.0 3.4E-35 7.5E-40 326.4 16.2 193 373-583 77-287 (590)
357 COG4152 ABC-type uncharacteriz 100.0 1.1E-34 2.5E-39 273.0 16.8 217 369-599 2-222 (300)
358 COG0488 Uup ATPase components 100.0 3.4E-34 7.3E-39 310.4 20.2 209 369-598 3-242 (530)
359 COG4167 SapF ABC-type antimicr 100.0 2.4E-34 5.3E-39 258.8 15.5 213 385-609 26-254 (267)
360 COG0396 sufC Cysteine desulfur 100.0 2.1E-33 4.7E-38 263.4 22.1 216 369-596 3-233 (251)
361 PLN03073 ABC transporter F fam 100.0 6.3E-34 1.4E-38 321.7 20.3 222 368-596 176-431 (718)
362 KOG0061 Transporter, ABC super 100.0 1.5E-33 3.2E-38 313.9 21.8 219 368-596 24-260 (613)
363 COG1134 TagH ABC-type polysacc 100.0 3.9E-33 8.5E-38 265.5 19.7 189 384-596 39-236 (249)
364 PF00005 ABC_tran: ABC transpo 100.0 3.5E-34 7.7E-39 260.8 12.0 136 388-538 1-137 (137)
365 COG4674 Uncharacterized ABC-ty 100.0 4E-33 8.8E-38 253.9 15.2 215 369-597 5-236 (249)
366 COG0488 Uup ATPase components 100.0 1.2E-31 2.6E-36 290.5 26.4 204 367-597 319-526 (530)
367 cd03270 ABC_UvrA_I The excisio 100.0 4.5E-32 9.7E-37 267.7 17.0 191 384-589 7-226 (226)
368 cd03271 ABC_UvrA_II The excisi 100.0 1.1E-31 2.3E-36 267.6 15.2 195 386-591 9-261 (261)
369 COG4133 CcmA ABC-type transpor 100.0 1E-31 2.2E-36 244.4 13.3 189 370-573 3-195 (209)
370 COG4586 ABC-type uncharacteriz 100.0 8.8E-32 1.9E-36 257.6 12.4 208 386-604 38-254 (325)
371 COG4107 PhnK ABC-type phosphon 100.0 5.6E-31 1.2E-35 235.3 15.1 225 369-605 6-251 (258)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 5.1E-31 1.1E-35 254.1 13.9 164 389-582 14-190 (197)
373 COG4778 PhnL ABC-type phosphon 100.0 3E-30 6.4E-35 229.9 12.1 203 369-581 4-226 (235)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 8.6E-30 1.9E-34 255.1 14.3 192 369-581 3-234 (243)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 8.3E-30 1.8E-34 249.6 12.0 192 369-585 5-211 (213)
376 PF00664 ABC_membrane: ABC tra 100.0 1.2E-25 2.5E-30 226.5 39.6 273 46-324 2-275 (275)
377 KOG0059 Lipid exporter ABCA1 a 100.0 6.9E-27 1.5E-31 271.6 33.4 220 368-601 563-792 (885)
378 COG4138 BtuD ABC-type cobalami 100.0 6.5E-29 1.4E-33 222.3 6.4 209 370-597 4-222 (248)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-27 2.3E-32 240.9 12.7 187 398-584 25-247 (251)
380 KOG0927 Predicted transporter 99.9 6.6E-28 1.4E-32 250.2 11.2 199 368-591 388-591 (614)
381 cd03240 ABC_Rad50 The catalyti 99.9 2E-27 4.4E-32 230.5 12.8 162 392-582 17-197 (204)
382 cd03274 ABC_SMC4_euk Eukaryoti 99.9 1.2E-27 2.6E-32 233.2 10.5 184 369-581 5-203 (212)
383 PRK00349 uvrA excinuclease ABC 99.9 2.3E-26 5E-31 264.0 21.3 104 498-601 818-932 (943)
384 PRK00635 excinuclease ABC subu 99.9 2.3E-26 4.9E-31 274.1 21.4 213 369-598 600-908 (1809)
385 KOG0065 Pleiotropic drug resis 99.9 4.4E-27 9.6E-32 266.8 13.3 199 384-592 803-1017(1391)
386 COG1129 MglA ABC-type sugar tr 99.9 8.5E-26 1.8E-30 238.8 19.0 213 369-592 263-486 (500)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.7E-26 5.8E-31 229.9 11.7 184 399-582 23-233 (247)
388 TIGR00630 uvra excinuclease AB 99.9 1.1E-24 2.4E-29 249.8 21.9 97 498-594 816-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 2.6E-24 5.6E-29 222.8 20.5 219 367-593 255-489 (501)
390 KOG0062 ATPase component of AB 99.9 1.6E-23 3.4E-28 216.7 18.0 211 368-610 361-576 (582)
391 KOG0066 eIF2-interacting prote 99.9 6.1E-24 1.3E-28 214.3 14.4 198 369-593 586-788 (807)
392 KOG0927 Predicted transporter 99.9 1.5E-23 3.3E-28 218.0 15.3 222 368-597 74-310 (614)
393 KOG0062 ATPase component of AB 99.9 2.7E-24 5.8E-29 222.3 8.9 204 367-598 78-287 (582)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-23 5.3E-28 200.9 12.1 169 389-584 13-192 (198)
395 COG1245 Predicted ATPase, RNas 99.9 2.1E-22 4.7E-27 205.1 15.2 169 388-581 352-530 (591)
396 cd03239 ABC_SMC_head The struc 99.9 3.3E-22 7.1E-27 189.5 13.8 85 492-582 83-172 (178)
397 cd01128 rho_factor Transcripti 99.9 5.8E-23 1.3E-27 203.5 6.2 200 393-608 11-229 (249)
398 KOG2355 Predicted ABC-type tra 99.9 6.5E-21 1.4E-25 175.4 15.9 211 368-595 12-236 (291)
399 COG4170 SapD ABC-type antimicr 99.9 5.6E-21 1.2E-25 176.2 13.6 209 385-604 20-257 (330)
400 cd03280 ABC_MutS2 MutS2 homolo 99.8 4.1E-21 8.9E-26 186.2 11.5 145 388-589 17-172 (200)
401 COG0178 UvrA Excinuclease ATPa 99.8 1.4E-20 3E-25 204.2 16.6 104 502-605 815-928 (935)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.8 4.1E-21 8.9E-26 187.3 10.9 180 389-584 15-211 (213)
403 cd03241 ABC_RecN RecN ATPase i 99.8 1.3E-20 2.9E-25 191.7 14.6 76 509-584 170-249 (276)
404 PRK00635 excinuclease ABC subu 99.8 6.8E-20 1.5E-24 219.2 20.0 204 387-601 1505-1801(1809)
405 KOG0065 Pleiotropic drug resis 99.8 1.2E-20 2.5E-25 215.0 12.1 207 385-596 128-351 (1391)
406 COG2401 ABC-type ATPase fused 99.8 1.1E-19 2.4E-24 183.2 14.0 198 366-586 354-588 (593)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 1.3E-19 2.9E-24 169.4 10.2 134 393-582 16-155 (162)
408 COG1245 Predicted ATPase, RNas 99.8 3.2E-19 6.9E-24 182.2 9.8 190 374-581 79-287 (591)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.8 4.5E-19 9.7E-24 174.0 10.0 153 384-590 16-175 (222)
410 cd03242 ABC_RecF RecF is a rec 99.8 5.4E-18 1.2E-22 172.0 14.8 190 389-585 13-269 (270)
411 cd00820 PEPCK_HprK Phosphoenol 99.7 2.4E-18 5.2E-23 146.3 5.8 75 386-468 3-77 (107)
412 PRK00349 uvrA excinuclease ABC 99.7 1.9E-17 4.1E-22 190.8 14.1 100 498-597 477-586 (943)
413 TIGR00630 uvra excinuclease AB 99.7 2.4E-17 5.2E-22 189.6 14.4 95 503-597 481-584 (924)
414 cd03283 ABC_MutS-like MutS-lik 99.7 7.6E-18 1.6E-22 162.6 8.4 138 385-574 14-154 (199)
415 cd03243 ABC_MutS_homologs The 99.7 1E-17 2.3E-22 162.6 8.1 153 391-594 22-177 (202)
416 TIGR00606 rad50 rad50. This fa 99.7 1E-16 2.2E-21 194.9 14.3 118 457-580 1153-1288(1311)
417 TIGR02858 spore_III_AA stage I 99.7 2.2E-16 4.7E-21 158.4 12.3 142 399-595 112-268 (270)
418 KOG0066 eIF2-interacting prote 99.6 3.5E-16 7.5E-21 158.7 7.9 210 369-592 264-495 (807)
419 PRK00064 recF recombination pr 99.6 8.3E-15 1.8E-19 154.4 16.4 76 508-585 272-359 (361)
420 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.9E-15 4.2E-20 147.8 9.3 154 385-594 18-179 (216)
421 cd03282 ABC_MSH4_euk MutS4 hom 99.6 6.6E-15 1.4E-19 142.4 11.9 141 384-575 15-158 (204)
422 PHA02562 46 endonuclease subun 99.6 5.6E-15 1.2E-19 166.2 8.2 106 478-585 432-555 (562)
423 PF02463 SMC_N: RecF/RecN/SMC 99.6 1.7E-14 3.6E-19 142.2 10.6 168 390-580 17-211 (220)
424 KOG0063 RNAse L inhibitor, ABC 99.5 2.9E-14 6.3E-19 144.9 12.0 195 377-596 343-548 (592)
425 PRK07721 fliI flagellum-specif 99.5 6.8E-13 1.5E-17 141.6 16.2 176 385-592 146-339 (438)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.5E-12 3.2E-17 127.1 12.4 136 386-575 17-161 (213)
427 TIGR01069 mutS2 MutS2 family p 99.4 1E-12 2.2E-17 150.2 11.3 145 369-572 295-449 (771)
428 TIGR00634 recN DNA repair prot 99.4 7.3E-13 1.6E-17 147.9 9.5 77 508-584 439-519 (563)
429 smart00534 MUTSac ATPase domai 99.4 5.6E-13 1.2E-17 127.5 7.1 78 504-584 56-138 (185)
430 PRK11098 microcin B17 transpor 99.4 1.3E-08 2.9E-13 107.2 39.5 281 54-352 103-397 (409)
431 PTZ00132 GTP-binding nuclear p 99.4 1.5E-12 3.2E-17 127.8 9.2 44 513-556 156-204 (215)
432 PRK12369 putative transporter; 99.4 2E-08 4.2E-13 103.8 39.4 284 52-350 26-321 (326)
433 PRK10869 recombination and rep 99.4 1.9E-12 4.2E-17 143.3 10.3 77 508-584 429-509 (553)
434 PRK14079 recF recombination pr 99.3 1.9E-11 4.1E-16 128.3 15.6 78 508-590 262-348 (349)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2.1E-12 4.5E-17 126.3 7.8 138 385-574 18-160 (222)
436 PRK13695 putative NTPase; Prov 99.3 3.4E-12 7.4E-17 120.9 7.3 80 506-588 75-156 (174)
437 PRK08533 flagellar accessory p 99.3 4.5E-11 9.8E-16 118.1 14.7 144 395-581 21-184 (230)
438 PF06472 ABC_membrane_2: ABC t 99.3 2.4E-08 5.1E-13 102.0 35.1 225 50-284 34-263 (281)
439 TIGR00611 recf recF protein. A 99.3 3.5E-11 7.5E-16 126.8 14.5 63 508-572 274-345 (365)
440 KOG0063 RNAse L inhibitor, ABC 99.3 3E-12 6.4E-17 130.5 6.1 171 396-581 98-287 (592)
441 COG0178 UvrA Excinuclease ATPa 99.3 3E-11 6.5E-16 132.4 12.8 95 504-598 476-579 (935)
442 PRK00409 recombination and DNA 99.2 5.4E-11 1.2E-15 136.5 13.1 80 505-586 386-468 (782)
443 PF13748 ABC_membrane_3: ABC t 99.2 1.1E-07 2.4E-12 91.3 31.7 174 36-229 3-176 (237)
444 TIGR02788 VirB11 P-type DNA tr 99.2 4E-11 8.8E-16 123.9 8.7 143 391-595 137-280 (308)
445 cd01124 KaiC KaiC is a circadi 99.2 1.4E-10 3.1E-15 111.0 11.9 84 498-581 60-163 (187)
446 PRK10733 hflB ATP-dependent me 99.2 3.3E-12 7.1E-17 144.3 -0.3 174 216-423 29-210 (644)
447 PRK01156 chromosome segregatio 99.2 7E-11 1.5E-15 140.0 10.4 76 506-581 798-883 (895)
448 TIGR03238 dnd_assoc_3 dnd syst 99.2 2.3E-11 5.1E-16 128.3 4.8 67 386-455 20-87 (504)
449 PRK03918 chromosome segregatio 99.1 1.3E-10 2.9E-15 137.6 9.7 74 508-581 787-867 (880)
450 PRK06793 fliI flagellum-specif 99.1 9.5E-10 2.1E-14 116.7 13.5 168 369-590 130-305 (432)
451 TIGR02168 SMC_prok_B chromosom 99.1 1.5E-10 3.3E-15 141.5 8.5 75 506-580 1086-1164(1179)
452 PRK13830 conjugal transfer pro 99.1 7.4E-10 1.6E-14 128.6 13.5 67 524-590 649-727 (818)
453 TIGR00618 sbcc exonuclease Sbc 99.1 4E-10 8.6E-15 135.1 10.7 77 507-583 948-1036(1042)
454 cd01131 PilT Pilus retraction 99.0 5.6E-10 1.2E-14 107.9 7.8 118 400-580 3-121 (198)
455 cd03286 ABC_MSH6_euk MutS6 hom 99.0 2.5E-09 5.5E-14 104.3 11.6 138 385-574 17-159 (218)
456 cd01120 RecA-like_NTPases RecA 99.0 3.3E-09 7.1E-14 98.6 11.9 129 400-571 1-140 (165)
457 TIGR02169 SMC_prok_A chromosom 99.0 6.9E-10 1.5E-14 135.7 9.2 85 497-581 1056-1150(1164)
458 smart00382 AAA ATPases associa 99.0 2.1E-08 4.5E-13 90.2 16.6 117 397-567 1-125 (148)
459 PRK00300 gmk guanylate kinase; 99.0 7.7E-10 1.7E-14 107.7 7.3 79 396-484 3-93 (205)
460 TIGR00767 rho transcription te 99.0 1.6E-09 3.5E-14 112.8 9.5 82 337-425 103-195 (415)
461 PRK06067 flagellar accessory p 99.0 1.1E-08 2.4E-13 101.7 14.1 150 394-582 21-187 (234)
462 PF13304 AAA_21: AAA domain; P 98.9 2.7E-09 5.9E-14 106.9 7.0 64 508-571 235-302 (303)
463 PRK02224 chromosome segregatio 98.9 5.4E-09 1.2E-13 123.9 9.3 75 508-582 780-868 (880)
464 PRK10246 exonuclease subunit S 98.8 7.5E-09 1.6E-13 123.5 9.9 75 507-581 947-1031(1047)
465 COG3910 Predicted ATPase [Gene 98.8 4.6E-08 1E-12 90.0 11.1 84 509-594 129-214 (233)
466 PRK06002 fliI flagellum-specif 98.8 1.5E-08 3.2E-13 107.8 7.8 85 368-455 138-229 (450)
467 PF09818 ABC_ATPase: Predicted 98.7 2.4E-07 5.1E-12 96.8 14.3 172 375-586 227-417 (448)
468 PF05992 SbmA_BacA: SbmA/BacA- 98.7 0.00028 6.1E-09 71.0 35.3 237 96-347 61-310 (315)
469 PRK01889 GTPase RsgA; Reviewed 98.7 1.5E-08 3.2E-13 106.7 5.4 132 388-527 185-321 (356)
470 PRK13891 conjugal transfer pro 98.7 4.5E-07 9.8E-12 106.0 17.2 54 520-573 680-735 (852)
471 cd01125 repA Hexameric Replica 98.7 5.9E-08 1.3E-12 96.8 8.0 45 523-568 107-159 (239)
472 PRK07196 fliI flagellum-specif 98.6 2.1E-08 4.6E-13 106.6 4.6 83 385-468 143-235 (434)
473 cd01130 VirB11-like_ATPase Typ 98.6 5.1E-08 1.1E-12 93.4 6.1 79 387-468 14-95 (186)
474 TIGR02655 circ_KaiC circadian 98.6 1.6E-08 3.6E-13 111.0 1.2 156 394-581 17-190 (484)
475 cd02023 UMPK Uridine monophosp 98.6 7.5E-08 1.6E-12 93.2 5.4 109 400-543 1-114 (198)
476 TIGR01420 pilT_fam pilus retra 98.5 2.8E-07 6.1E-12 96.8 9.8 121 395-578 119-240 (343)
477 PRK06995 flhF flagellar biosyn 98.5 9.2E-08 2E-12 103.1 6.2 162 390-586 248-430 (484)
478 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1E-07 2.2E-12 100.1 6.3 89 396-486 132-234 (358)
479 PRK08149 ATP synthase SpaL; Va 98.5 2.2E-07 4.7E-12 98.8 7.3 70 385-455 139-215 (428)
480 TIGR00101 ureG urease accessor 98.5 2.7E-07 6E-12 89.1 6.7 106 400-514 3-108 (199)
481 PRK10078 ribose 1,5-bisphospho 98.4 2.2E-07 4.8E-12 88.9 5.0 57 397-456 1-57 (186)
482 TIGR01026 fliI_yscN ATPase Fli 98.4 1.8E-06 4E-11 92.7 12.4 182 385-593 151-345 (440)
483 PLN03210 Resistant to P. syrin 98.4 8.4E-07 1.8E-11 107.8 10.7 43 391-433 200-243 (1153)
484 PRK09825 idnK D-gluconate kina 98.4 2.5E-07 5.5E-12 87.5 4.6 65 397-467 2-68 (176)
485 TIGR00235 udk uridine kinase. 98.4 3.4E-07 7.3E-12 89.3 4.4 43 396-459 4-46 (207)
486 PRK13898 type IV secretion sys 98.3 1.5E-05 3.3E-10 93.3 18.4 189 390-582 438-709 (800)
487 COG0419 SbcC ATPase involved i 98.3 1.2E-06 2.6E-11 103.8 9.4 76 507-582 813-897 (908)
488 TIGR02322 phosphon_PhnN phosph 98.3 8.5E-07 1.8E-11 84.3 6.6 62 398-460 1-78 (179)
489 TIGR02903 spore_lon_C ATP-depe 98.3 1.8E-06 3.9E-11 97.3 9.9 110 397-554 174-291 (615)
490 TIGR03263 guanyl_kin guanylate 98.3 3.6E-07 7.8E-12 86.9 3.7 78 398-485 1-90 (180)
491 TIGR03881 KaiC_arch_4 KaiC dom 98.3 1.1E-05 2.4E-10 79.9 13.5 40 394-433 16-56 (229)
492 cd00009 AAA The AAA+ (ATPases 98.3 6.9E-06 1.5E-10 74.2 11.1 54 515-569 72-131 (151)
493 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.6E-11 107.0 7.7 62 506-569 1244-1317(1353)
494 PLN02796 D-glycerate 3-kinase 98.3 3.4E-07 7.3E-12 94.2 2.4 61 386-446 80-151 (347)
495 cd00071 GMPK Guanosine monopho 98.3 4.2E-07 9.2E-12 82.3 2.6 75 400-484 1-88 (137)
496 PRK05480 uridine/cytidine kina 98.3 1.3E-06 2.8E-11 85.2 6.1 69 396-485 4-77 (209)
497 PRK06315 type III secretion sy 98.3 7.8E-07 1.7E-11 95.0 4.6 102 386-488 153-276 (442)
498 PRK00454 engB GTP-binding prot 98.2 8.4E-07 1.8E-11 85.4 4.3 51 503-557 141-194 (196)
499 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3.1E-06 6.6E-11 84.2 8.2 81 395-483 16-103 (235)
500 PRK09183 transposase/IS protei 98.2 4.7E-06 1E-10 83.9 8.8 52 372-424 74-128 (259)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-120 Score=972.43 Aligned_cols=581 Identities=53% Similarity=0.869 Sum_probs=550.9
Q ss_pred CCCcccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 007152 22 DAVPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIV 101 (616)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (616)
+.+.+...-+++++.+.+++++++..++++.++.++..+..|.+++.++|.+....+ ....+...+.++.+++
T Consensus 126 ~~~~~~~~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-------~~~~~~~~~~~l~~l~ 198 (716)
T KOG0058|consen 126 AGQKPNHTLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-------SADALKRACTILLGLF 198 (716)
T ss_pred CCcccchhHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHH
Confidence 333444447889999999999999999999999999999999999999998876222 1334455677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 102 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFI 181 (616)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~ 181 (616)
+..+++.+++.+++...++++..++|..+|.++++++.+||+++.+||+++|++.|+..+.+.+...+...+.+.++.++
T Consensus 199 ~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g 278 (716)
T KOG0058|consen 199 LIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFG 278 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q 007152 182 GLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVD 261 (616)
Q Consensus 182 ~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~ 261 (616)
++++|+++||.+++++++.+|+++++...++++.++..++.++..++.++...|.+++++|||+|+.|+.+.+||.+..+
T Consensus 279 ~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~ 358 (716)
T KOG0058|consen 279 GLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLR 358 (716)
T ss_pred hHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 262 ETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGAS 341 (616)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (616)
+.++...|.....+.++...++...+..+.++++|++++..|+||.|.+++|..|...+..++..++.++..++++..+.
T Consensus 359 ~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs 438 (716)
T KOG0058|consen 359 EVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGAS 438 (716)
T ss_pred HHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 342 RRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 342 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+|++|+++.+|..+..+...|. ...+.|+|+||+|+||.+|+.+||+|+||+|+|||.||+||||||||||+++||.+|
T Consensus 439 ~rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred HHHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9999999998876654433333 467899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccc
Q 007152 422 YDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT 501 (616)
Q Consensus 422 ~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT 501 (616)
|+|++|+|++||+||++++..+||++||+|.|||.||++||+|||.||.+ ++++|+++.|++.|++||||.++|+||||
T Consensus 518 Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 518 YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNT 596 (716)
T ss_pred cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEe
Q 007152 502 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 502 ~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~ 581 (616)
.|||+|.+|||||||||||||||+|||.||||||||||||+++|..|.++|.+..+++|+|+|+|||+++++||+|+|+|
T Consensus 597 ~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 597 VVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVID 676 (716)
T ss_pred ccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhHHhhcC-ChhHHHHHHHhcC
Q 007152 582 DGEIVESGTHEELLSKG-GVYTALVKRQLQE 611 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~~-~~y~~l~~~~~~~ 611 (616)
+|+++|.|+|+||+++. |.|++++++|...
T Consensus 677 ~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 677 KGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred CCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 99999999999999987 8999999999753
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.7e-111 Score=939.41 Aligned_cols=568 Identities=34% Similarity=0.547 Sum_probs=541.8
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+.++++.++++++.+.-.++.+++..+++++.|++.+.++|.+..... ...++...++++++.++..++..
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--------~~tL~vl~ig~~~~~l~~~~l~~ 212 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--------RSTLTVLAIGLLLAALFEALLRL 212 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999986543 34555666777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 189 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 189 (616)
++.+...+++.++..++..++|+|++++|++||+++++||+++|+. |.++++++++..+...+.+++++++++++|+++
T Consensus 213 lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~y 291 (709)
T COG2274 213 LRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY 291 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 190 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 190 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
+|++++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|+++||+.+.|+.+..+|++...+..+...+
T Consensus 292 s~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~ 371 (709)
T COG2274 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK 371 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 349 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~ 349 (616)
..+.......+..++..+..++++|+|+++|++|++|+|.+++|.++...+..|+..+.+.+.++++.+.+.+|+.++++
T Consensus 372 ~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~ 451 (709)
T COG2274 372 TEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILD 451 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 350 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
.|+|.+.+......+...++|+|+||+|+|+.. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|
T Consensus 452 ~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I 530 (709)
T COG2274 452 TPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530 (709)
T ss_pred CCcccccccccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 998865433223345567899999999999865 4479999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
++||.|+.++++.++|++|+||+||++||+|||+|||++++| ++++|++++||+.+|+||||.++|.||||+|||+|.+
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 999999999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
|||||||||+|||||+++|+||||||||||||++||+.|.++|.+..+++|+|+||||++++++||+|+|||+|+|+|+|
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCChhHHHHHHH
Q 007152 590 THEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 590 ~~~eL~~~~~~y~~l~~~~ 608 (616)
||+||++.+|.|+++|+.|
T Consensus 690 s~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 690 SHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred CHHHHHHhcChHHHHHhcc
Confidence 9999999999999999876
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-107 Score=917.68 Aligned_cols=577 Identities=38% Similarity=0.605 Sum_probs=537.6
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 27 ANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSV 106 (616)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (616)
....+.+++++.+|.|+.++++++++++.....++..++++.++......++. . .......|+++++++.+...+
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~--~---~~~~~~~~al~f~~l~~~~~i 722 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD--E---LKREVRAWALIFLGLGIVSGI 722 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH--H---HHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999987643221 0 111122367778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc-cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 107 CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV-TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 185 (616)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~-~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 185 (616)
..+++.|++...++++..++|...|+++++++.+||++ .++|.+.+|+.+|...++..+...+..++.++..+++++++
T Consensus 723 ~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 723 TNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 23399999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHH
Q 007152 186 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 265 (616)
Q Consensus 186 l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 265 (616)
.|+++|.++++++++.|++++......+.+.....+..+..++.++...|+++|+|||++|+.|+++.+.|.+..++..+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 266 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 345 (616)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~ 345 (616)
...+...+.++..++.+++.+...++.+++|++++.+|.+++.+++-.+..+..-...+.+.....+.+.+++.++.+++
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777777788888899999999999999999
Q ss_pred HHhcccCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 346 QLLDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 346 ~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
++++.++..+.+. .....+...|+|+|+||+|+||.+|+.+||+|+||+|++||++|+||||||||||.+.||.|+|+|
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 9999987544321 111223456889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc
Q 007152 425 IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG 504 (616)
Q Consensus 425 ~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg 504 (616)
++|.|.|||+|+++++++++|++|+.|+|||.||++||||||+||.+ +++++|+.+|++.|++|+||.+||+||||.||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 99999999999999999999999999999999999999999999965 58999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
|+|.+||||||||||||||++|||+||||||+|||||.++|+.|+++|++.+.++|+|+|+|||+++++||.|.|++||+
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhhcCChhHHHHHHHh
Q 007152 585 IVESGTHEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 585 Ive~G~~~eL~~~~~~y~~l~~~~~ 609 (616)
|+|+|||+||++++|.|.+|++.|.
T Consensus 1202 VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1202 VVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred EEecccHHHHHhCCCchHHHhhhcc
Confidence 9999999999999999999999885
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-104 Score=892.24 Aligned_cols=570 Identities=22% Similarity=0.338 Sum_probs=505.9
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+++++++.+++++.++++++++++..++.++.|+++++++|.+...... ...+..++++++++.++..++.+
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-------REALLPPFILLILLFVLRALLAW 81 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46779899999999999999999999999999999999999987521110 11122334445556667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 189 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 189 (616)
++.++..+.+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++.+++.+++++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (588)
T PRK11174 82 LRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPI 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 190 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 190 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
+|++++++++++|+..++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK11174 162 NWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888889999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGAL---------TSFILYSLTVGSSVSGLSSLYTVAMKAAGA 340 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 340 (616)
..+.......+..++..+..+++++++++.+ .|.+|+|.+ +++..+...+..|+..++..+..++++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 320 (588)
T PRK11174 242 VLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGA 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777666666666555555665544 488888764 233366677889999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 341 SRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 341 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
.+|+.++++.+++.+..+.........+.|+|+||+|.|++ ++++|+|+||+|+||+++||||+||||||||+++|+|
T Consensus 321 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 321 AESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999999876543221111111112346999999987764 3479999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc
Q 007152 421 FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ 500 (616)
Q Consensus 421 ~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~Gld 500 (616)
+| |++|+|++||+|+++++.+++|++|+||||||+||+|||||||++|+| +++|+++++||+.|++++||++||+|||
T Consensus 399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~d 476 (588)
T PRK11174 399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLD 476 (588)
T ss_pred CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence 99 999999999999999999999999999999999999999999999987 7999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEE
Q 007152 501 TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 501 T~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
|.|||+|.+|||||||||+||||+++||+||||||||||||++||+.|.++|+++.+++|+|+||||++++++||+|++|
T Consensus 477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred eCCEEEEecChhHHhhcCChhHHHHHHHhcC
Q 007152 581 SDGEIVESGTHEELLSKGGVYTALVKRQLQE 611 (616)
Q Consensus 581 ~~G~Ive~G~~~eL~~~~~~y~~l~~~~~~~ 611 (616)
++|+|+|+|+|+||+++++.|+++++.|.++
T Consensus 557 ~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 557 QDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred eCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 9999999999999999999999999988653
No 5
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.3e-101 Score=880.05 Aligned_cols=564 Identities=26% Similarity=0.398 Sum_probs=518.1
Q ss_pred hhHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLAL-AKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 29 ~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
..++++++. ++++++.+...++++++..++.++.|++++.++|.+..... ...++.++++++++.++..++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~ 192 (686)
T TIGR03797 121 LGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--------RSLLVQIALALLAAAVGAAAF 192 (686)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------hhHHHHHHHHHHHHHHHHHHH
Confidence 445666666 68889999999999999999999999999999998864322 123334455566667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++.++..+++.++..++|..+|+|++++|+.+|+++++|++++|++ |++.+++++...+...+.+.+.+++++++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (686)
T TIGR03797 193 QLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMF 271 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 7999999999988888888888888999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
+++|++++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|.+...+..+..
T Consensus 272 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 351 (686)
T TIGR03797 272 YYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLE 351 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.+..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++++..+++|+.++
T Consensus 352 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 431 (686)
T TIGR03797 352 LSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPI 431 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 348 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
++.++|.+... . ......+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|
T Consensus 432 l~~~~e~~~~~-~-~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 432 LEALPEVDEAK-T-DPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred hcCCcccccCc-C-CCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 98766543211 1 111234579999999999754 45799999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 428 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 428 ~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
+|++||+|+++++++++|++|+||||||++|+|||+|||++++| ++++++++|++.++++++++++|+||||++||+|
T Consensus 509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 99999999999999999999999999999999999999999976 8999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
.+|||||||||+||||++++|||||||||||+||++||+.+.++|+++ ++|+|+||||+++++.||+|++|++|+|+|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999886 689999999999999999999999999999
Q ss_pred ecChhHHhhcCChhHHHHHHH
Q 007152 588 SGTHEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 588 ~G~~~eL~~~~~~y~~l~~~~ 608 (616)
.|+|+||+++++.|+++++.|
T Consensus 665 ~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 665 QGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred ECCHHHHHhCCcHHHHHHHhc
Confidence 999999999999999999866
No 6
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.6e-101 Score=859.84 Aligned_cols=563 Identities=40% Similarity=0.689 Sum_probs=514.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++.+.+ ++ .+.++.++.++..++.+..|++++.++|.+... ......+...+++++++..++.+.
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~ 71 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----------LGELLELLLLLLLLALLGGVLRAL 71 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 77 888899999999999999999999999988611 122233344455555577788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
..+.....+.++..++|.++|++++++|+++|++.++|++++|+++|++.+...+......+...++.+++.+++++..+
T Consensus 72 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (567)
T COG1132 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLS 151 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888899999999999999999999999999999999999999999999998875555556788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|.++++.++..|++.+...++.++.++...+.++..+++++.+.|.++|++++|+|+.++...+++.+..++..+...+.
T Consensus 152 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~ 231 (567)
T COG1132 152 WRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888889999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+..+....+..++..+..++++++|++.+..|.+++|.++++..+...+..|+..+...+..++.+..+.+|+.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~ 311 (567)
T COG1132 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE 311 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE
Q 007152 351 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 430 (616)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~ 430 (616)
+++..+.... .....++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 312 ~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 312 EPEVEDPPDP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred CccccCCCCC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 6653332221 1223467999999999984 34799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 431 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 431 idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+||+|+++++.+++|++|++|||||+||+|||+|||++|+| +++|||+++||+.|+++|||+++|+||||.|||+|.+|
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 99999999999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
|||||||||||||+++||||||||||||+||++||+.|+++++++.++||+|+||||++++++||+|+|||+|+|+|.|+
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhHHhhcCChhHHHHHHHhc
Q 007152 591 HEELLSKGGVYTALVKRQLQ 610 (616)
Q Consensus 591 ~~eL~~~~~~y~~l~~~~~~ 610 (616)
|+||++++|.|++||+.|..
T Consensus 547 h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 547 HEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred HHHHHHcCCHHHHHHHHhhc
Confidence 99999999999999998863
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.8e-101 Score=880.44 Aligned_cols=565 Identities=27% Similarity=0.429 Sum_probs=518.6
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
..+++++.+++++++.+...++++++..++.++.|++++.++|.+..... ...++.+++++++++++..++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ 213 (708)
T TIGR01193 142 NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--------MGTLGIISIGLIIAYIIQQILS 213 (708)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999998865422 1223334445555667778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
+++.++..+++.++..++|.++|+|++++|+.+|+++++|++++|++ |++.+++++...+...+.++++++++++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 292 (708)
T TIGR01193 214 YIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR 292 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 89999999999888888888888888889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 268 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 268 (616)
++|++++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||++|.|+.+.++|.+...+..+...
T Consensus 293 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 372 (708)
T TIGR01193 293 QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSF 372 (708)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 269 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
+..+.......+..++..+..++++++|++++.+|++|+|.++++..+...+..|+..+...+..++.+..+.+|+.+++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 452 (708)
T TIGR01193 373 KYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY 452 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888787788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 349 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+.++|.+......+.++..+.|+|+||+|+|++ ++++|+|+||+|+||+++||||+||||||||+++|+|+|+|++|+
T Consensus 453 ~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 453 LVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred cCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 877654322211112233467999999999974 347999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~-~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
|++||+|+++++.+++|++|+||||||+||+|||||||++++ | ++++++++++++.++++++++++|+||||.|||+|
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 999999999999999999999999999999999999999994 5 78999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
.+|||||||||+||||++++|+|||||||||+||++||+.+.++|++. +++|+|+||||+++++.||+|++|++|+++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999885 6899999999999999999999999999999
Q ss_pred ecChhHHhhcCChhHHHHH
Q 007152 588 SGTHEELLSKGGVYTALVK 606 (616)
Q Consensus 588 ~G~~~eL~~~~~~y~~l~~ 606 (616)
.|+|+||++++|.|+++++
T Consensus 689 ~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 689 QGSHDELLDRNGFYASLIH 707 (708)
T ss_pred ECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999985
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.3e-100 Score=874.74 Aligned_cols=566 Identities=45% Similarity=0.699 Sum_probs=514.5
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 28 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
...+++++++.+++++.+...+++.++.+++.++.|++++.++|.+....+ ...+...+++++++.++..++
T Consensus 146 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 217 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--------PPALASAIFFMCLLSIASSVS 217 (711)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999998864322 111222333444555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++.++....+.++..++|.++|++++++|+++|++.++|++++|+++|++.+.+.+...+..++.+++.+++++++++
T Consensus 218 ~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 218 AGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
.++|++++++++.+|+..++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.+.....+.......++..+..++++++|++++.+|.+|+|.++++..|...+..|+..+...+..++++..+.+|+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777777777888888999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 348 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
++.+++.+......+ .+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 458 l~~~~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 458 LDRKPNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred hCCCCCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 987665432221111 1234579999999999865456899999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 428 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 428 ~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
+|++||+|+++++.+++|++|+||||||++|+|||||||+++.| +++|++++++++.++++++++++|+||||.+||+|
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 99999999999999999999999999999999999999999987 78999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
.+|||||||||+||||++++|+|+|||||||+||+++|+.+.+ . ...+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999 3 3447899999999999999999999999999999
Q ss_pred ecChhHHhhcCChhHHHH
Q 007152 588 SGTHEELLSKGGVYTALV 605 (616)
Q Consensus 588 ~G~~~eL~~~~~~y~~l~ 605 (616)
+|+|+||+++++.|++++
T Consensus 694 ~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 694 MGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred eeCHHHHHhCCCchHhcC
Confidence 999999999999999863
No 9
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1e-100 Score=879.89 Aligned_cols=564 Identities=26% Similarity=0.398 Sum_probs=518.7
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
..+++++++++++++.+...++++++..++.++.|++++.++|.+..... ...++.++++++++.++..++.
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ 211 (710)
T TIGR03796 140 SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--------QDWLRPLLLGMGLTALLQGVLT 211 (710)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 45778888899999999999999999999999999999999998765422 1122334445555667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
+++.++..+++.++..++|.++|+|++++|+++|+++++|++++|+++| +.+++++...+..++.+++.++++++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 290 (710)
T TIGR03796 212 WLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLL 290 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 268 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 268 (616)
++|++++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||++|+|+.+.++|.+...+..+...
T Consensus 291 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 370 (710)
T TIGR03796 291 YDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQ 370 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 269 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
+..+.......+..++..+..++++++|++++.+|++|+|.++++..+...+..|+..+...+..++.+..+++|+.+++
T Consensus 371 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il 450 (710)
T TIGR03796 371 ELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCC----C-CCCC-CCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 349 DRVSSMPKSG----N-QCPL-GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 349 ~~~~~~~~~~----~-~~~~-~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+.+++.+... . .... +...+.|+++||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|
T Consensus 451 ~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 8776543221 0 0111 2234679999999999864 457999999999999999999999999999999999999
Q ss_pred CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 007152 423 DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTF 502 (616)
Q Consensus 423 ~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~ 502 (616)
+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++++| +++++++++|++.++++++++++|+||||.
T Consensus 530 ~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~ 608 (710)
T TIGR03796 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAE 608 (710)
T ss_pred CCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccce
Confidence 9999999999999999999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 503 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 503 vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
+||+|.+|||||||||+||||++++|+|+||||||||||++||+.+.++|++ .++|+|+||||+++++.||+|++|++
T Consensus 609 i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLER 686 (710)
T ss_pred eccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999987 48999999999999999999999999
Q ss_pred CEEEEecChhHHhhcCChhHHHH
Q 007152 583 GEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 583 G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
|+|+|.|+|+||+++++.|++++
T Consensus 687 G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 687 GKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred CEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999999999987
No 10
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.2e-99 Score=853.64 Aligned_cols=569 Identities=34% Similarity=0.527 Sum_probs=517.9
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+++++++.+++++.+++.+++.++..++.++.|++++.++|.+.+... ...+....+.++++.++..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ 83 (582)
T PRK11176 12 TFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--------RSVLKWMPLVVIGLMILRGITSF 83 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888888888888888888888888889999999999998764321 11112222334445666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 189 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 189 (616)
++.++..+++.++...+|..+|+++.+.|+++|++.++|++++|+++|++.+.+++...+..++.+++.+++++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (582)
T PRK11176 84 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 190 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 190 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
+|++++++++++|+.+++..++.++.++..++.++..+++.+.+.|.++|+++||++|.|+.+.++|++..++..+...+
T Consensus 164 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (582)
T PRK11176 164 SWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMK 243 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999898888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 349 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~ 349 (616)
..+.......+..++..+..++++++|++.+.+|.+|+|.++++..+...+..|+..+...+..++.++.+++|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~ 323 (582)
T PRK11176 244 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99888888888888888888889999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 350 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
.+++.+.... ..++..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 324 ~~~~~~~~~~--~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 324 LEQEKDEGKR--VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred CCCcCCCCCc--CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 7654322111 111233479999999999864 4579999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
++||+|+++++.+++|++|+||||||++|+|||+|||++|+|++++|++++++++.+|+++++++||+|+||.+||+|.+
T Consensus 401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~ 480 (582)
T PRK11176 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL 480 (582)
T ss_pred EECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCc
Confidence 99999999999999999999999999999999999999997645899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
|||||||||+||||++++|+|+||||||||||++||+.+.+.|.++.+++|+|+||||++.++.||+|++|++|+|+|+|
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERG 560 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCChhHHHHHHHh
Q 007152 590 THEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 590 ~~~eL~~~~~~y~~l~~~~~ 609 (616)
+|+||+++++.|+++++.|.
T Consensus 561 ~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 561 THAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred CHHHHHhCCChHHHHHHHHh
Confidence 99999999999999998774
No 11
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.8e-99 Score=866.80 Aligned_cols=557 Identities=26% Similarity=0.401 Sum_probs=511.8
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
..+++++++.+++++.+...++++++..++.++.|++++.++|.+..... ...++.++++++++.++..++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ 204 (694)
T TIGR03375 133 RPKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--------FETLWVLAIGVALAIVFDFVLK 204 (694)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--------HhHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999998764322 1223334444555566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
+++.++..+.+.++..++|..+|+|++++|+.+ .++++|++++|+ +|++.+++++...+...+.+++.++++++++++
T Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 282 (694)
T TIGR03375 205 TLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAI 282 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 788999999999 799999999998888888888888888899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 268 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 268 (616)
++|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...
T Consensus 283 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR03375 283 IGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGL 362 (694)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 269 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
+..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++.+..+.+|+.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il 442 (694)
T TIGR03375 363 KSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELM 442 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 349 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+.+++.+......+.+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+
T Consensus 443 ~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 443 QLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred cCCCCCCCCCCCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 8876543221111112234579999999999854 457999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
|++||+|+++++.+++|++|+||||||++|+|||+|||++++| ++++++++++++.++++++++++|+||||.+||+|.
T Consensus 522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~ 600 (694)
T TIGR03375 522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGR 600 (694)
T ss_pred EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCC
Confidence 9999999999999999999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
+|||||||||+||||++++|+++|||||||+||++||+.+.++|++..+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred cChhHHhhc
Q 007152 589 GTHEELLSK 597 (616)
Q Consensus 589 G~~~eL~~~ 597 (616)
|+|+||+++
T Consensus 681 G~~~eLl~~ 689 (694)
T TIGR03375 681 GPKDQVLEA 689 (694)
T ss_pred CCHHHHHHH
Confidence 999999875
No 12
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.6e-98 Score=839.49 Aligned_cols=568 Identities=24% Similarity=0.344 Sum_probs=505.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++++.+++++.++++++++++..++.+..|+++++++|........... .... ..+++.++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLY---SFNY-MLPAAGVRGAAIGRTAGRYG 79 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh---hHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 4457778889999999999999999999999999999999976421110000 0111 11222344455677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
..++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...++.++.+++.++++++++++++
T Consensus 80 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (574)
T PRK11160 80 ERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFD 159 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISV-AVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
|++++++++++|++.+ ++.++.++.++..++.++..+++++.+.|.++|+++||+||.|+.+.++|++..+++.+...+
T Consensus 160 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (574)
T PRK11160 160 LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRR 239 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877654 456677888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLT-VGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
..+..+....+..++..+..++++++|+++ .+|.+++|.++++..+... ...|+..+...+..++++..+++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll 318 (574)
T PRK11160 240 QANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEIT 318 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888888888888888999988 4899999999998877644 45688889999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 349 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+.+++.+++....+ .+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 319 ~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 319 EQKPEVTFPTTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred hCCCCCCCCcccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 87665322111111 1234579999999999854 347999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
|++||+|+++++.+++|++|+||||||++|++||+|||++++| ++++++++++++.+++++++++ |+||||.|||+|.
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~ 474 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGR 474 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCC
Confidence 9999999999999999999999999999999999999999987 7899999999999999999999 9999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
+|||||||||+||||++++|+++|||||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChhHHHHHH
Q 007152 589 GTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 589 G~~~eL~~~~~~y~~l~~~ 607 (616)
|+|+||++++|.|+++|+.
T Consensus 555 g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 555 GTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999863
No 13
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7.1e-99 Score=905.22 Aligned_cols=568 Identities=30% Similarity=0.415 Sum_probs=495.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.++++++.++++++.++++++++++.+++.++.|++++.++|.+..... .......++++++++.++..++.+
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN-------LEANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999999999999999999999999997653210 011122345556666677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc--cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
++.|+..++++++..++|.++|++++++|++||++ +++|++++|+++|++.+++++...+..++..++.+++++++++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~ 964 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF 964 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 8899999999999999999999989888888888888889999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHhCch
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELS-HK-----------------TQAAAATAASIAEESFGAIRTVRSFAQE 249 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e 249 (616)
+++|.++++++++++++ ...+.++.+... .+ ..+..++.+..+.|.++|+++||+|+.|
T Consensus 965 ~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e 1041 (1466)
T PTZ00265 965 YFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLE 1041 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcch
Confidence 99999888766444333 333333222211 11 2334567788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 250 KNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSS 329 (616)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~ 329 (616)
+++.++|.+..++..+...+.....+...++.+++..+..++++++|++++.+|.+|+|.+++++.+......++..+..
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~ 1121 (1466)
T PTZ00265 1042 DYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMS 1121 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888888899999999999999999999999988776666677888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCC-CCCCC---CCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEEC
Q 007152 330 LYTVAMKAAGASRRVFQLLDRVSSMPKS-GNQCP---LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVG 405 (616)
Q Consensus 330 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~---~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG 405 (616)
.+..+++++++++|+.++++.+++.+.. ....+ .+...+.|+|+||+|+||++++.++|+|+||+|+||+++||||
T Consensus 1122 ~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG 1201 (1466)
T PTZ00265 1122 LKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEEC
Confidence 9999999999999999999876543211 11111 1123467999999999987655689999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCC------------------------------------------------------CCCEEEE
Q 007152 406 PSGGGKSTIANLIERFYDP------------------------------------------------------IKGKILL 431 (616)
Q Consensus 406 ~sGsGKSTL~~lL~g~~~~------------------------------------------------------~~G~I~i 431 (616)
+||||||||++||+|+|+| ++|+|++
T Consensus 1202 ~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~i 1281 (1466)
T PTZ00265 1202 ETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILL 1281 (1466)
T ss_pred CCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEE
Confidence 9999999999999999999 6999999
Q ss_pred CCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 432 NGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 432 dg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
||+|+++++.+++|++|+||||||+||+|||||||+||+| +++++++++||+.|+++|||.+||+||||.|||+|.+||
T Consensus 1282 dG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LS 1360 (1466)
T PTZ00265 1282 DGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360 (1466)
T ss_pred CCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCC
Confidence 9999999999999999999999999999999999999987 799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeC----CEE
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSD----GEI 585 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~----G~I 585 (616)
|||||||||||||+|+|+||||||||||||++||+.|+++|.+.. +++|+|+||||++++++||+|+||++ |++
T Consensus 1361 GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCE
Confidence 999999999999999999999999999999999999999999884 68999999999999999999999999 995
Q ss_pred E-EecChhHHhh-cCChhHHHHHHH
Q 007152 586 V-ESGTHEELLS-KGGVYTALVKRQ 608 (616)
Q Consensus 586 v-e~G~~~eL~~-~~~~y~~l~~~~ 608 (616)
+ |+|+|+||++ ++|.|+++++.|
T Consensus 1441 v~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1441 VQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEEecCHHHHHhcCCChHHHHHhhc
Confidence 5 8999999998 599999999876
No 14
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.7e-98 Score=854.49 Aligned_cols=569 Identities=32% Similarity=0.489 Sum_probs=524.0
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
..++++++..+++++.+...++++++..++.++.|++++.++|.+..... ...+..++++++++.++..++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--------~~~l~~l~~~~~~~~~~~~~~~ 196 (694)
T TIGR01846 125 FGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--------LSTLSVLALAMLAVAIFEPALG 196 (694)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------hhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999999999999999999999999999999998864322 1223334455556666788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
+++.++..+++.++..++|.++|+|++++|+++|++.++|++++|+ +|++.+++++...+..++.++++++++++++++
T Consensus 197 ~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 275 (694)
T TIGR01846 197 GLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFF 275 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 699999999998888888888888888889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 268 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 268 (616)
++|++++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|.+..++..+...
T Consensus 276 ~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 355 (694)
T TIGR01846 276 YSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASF 355 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 269 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
+..+.......+..++..+..++++++|++++.+|++|+|.++++..+...+..|+..+...+..++++..+++|+.+++
T Consensus 356 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 435 (694)
T TIGR01846 356 RVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDIL 435 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 349 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+.+++.+... ..+.+...+.|+++||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+
T Consensus 436 ~~~~e~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~ 513 (694)
T TIGR01846 436 NSPTEPRSAG-LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513 (694)
T ss_pred cCCCCccCCC-CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 8766543211 11122234679999999999754 357999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
|++||+|+++++.+++|++|+||||||++|++||+|||++++| ++++++++++|+.++++++++++|+||||.+||+|.
T Consensus 514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~ 592 (694)
T TIGR01846 514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGA 592 (694)
T ss_pred EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCC
Confidence 9999999999999999999999999999999999999999987 789999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
+|||||||||+||||++++|+|+|||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+++
T Consensus 593 ~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChhHHHHHHHh
Q 007152 589 GTHEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 589 G~~~eL~~~~~~y~~l~~~~~ 609 (616)
|+|+||++++|.|+++++.|.
T Consensus 673 g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 673 GRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred CCHHHHHHcCChHHHHHHhhc
Confidence 999999999999999998764
No 15
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-98 Score=786.51 Aligned_cols=552 Identities=28% Similarity=0.414 Sum_probs=511.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 47 IATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARL 126 (616)
Q Consensus 47 ~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 126 (616)
...++.++..+..+.+.+++..+++.+..+.. ...++.+++.+++++++..++.+.+.....+.+.++...+
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--------~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~L 75 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL--------FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASL 75 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888765431 2334556667778888999999999999999999999999
Q ss_pred HHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007152 127 RKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISV 206 (616)
Q Consensus 127 r~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~ 206 (616)
|..+++|+.++++.+-...++|++.+.+...++.++.++..++++.....+..++.++++++++|..++|.++++|++.+
T Consensus 76 R~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPl 155 (559)
T COG4988 76 RQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPL 155 (559)
T ss_pred HHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 207 AVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAAST 286 (616)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (616)
.+..++...++..+++......+++++.|.++|+.|+|.|+..+...+++.+..+++++..++..+.......+..++.+
T Consensus 156 fMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ 235 (559)
T COG4988 156 FMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAY 235 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC-CCCC
Q 007152 287 LSVIVVVIYGANLTIT-GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQ-CPLG 364 (616)
Q Consensus 287 ~~~~~~~~~g~~~v~~-g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~~ 364 (616)
+..+++..+.+..... |++|....+.+..+.--++.|+..++..++.-+.+.++.+.+..+++.|.+.++.... ....
T Consensus 236 lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~ 315 (559)
T COG4988 236 LSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVAN 315 (559)
T ss_pred HHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccccc
Confidence 9998888888877777 8999999999999999999999999999999999999999999999887665433221 1111
Q ss_pred CCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH
Q 007152 365 DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 365 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~ 444 (616)
.....|+++|++|+||+++ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++|
T Consensus 316 ~~~~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 316 EPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred CCCceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH
Confidence 1223455669999999753 79999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 445 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
|++++||||+|+||+|||||||++++| +++|++++++++.+++.+|++. |+|+||+|||+|.+|||||+||+++||||
T Consensus 394 ~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 394 RKQISWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARAL 471 (559)
T ss_pred HhHeeeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999998 7999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHH
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 604 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l 604 (616)
+++++++|||||||+||.+||+.|.++|.++.+++|+|+||||++.+++||+|+|||+|+++|.|+|+||.+++|.|++|
T Consensus 472 l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l 551 (559)
T COG4988 472 LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551 (559)
T ss_pred cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc
Q 007152 605 VKRQLQ 610 (616)
Q Consensus 605 ~~~~~~ 610 (616)
++.|.+
T Consensus 552 ~~~q~~ 557 (559)
T COG4988 552 LKQQEG 557 (559)
T ss_pred HHHHhc
Confidence 998864
No 16
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5e-100 Score=857.23 Aligned_cols=576 Identities=41% Similarity=0.643 Sum_probs=525.5
Q ss_pred hhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALAKP-DAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 29 ~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
..+..++++..+ .+..+.++.+.+++..+..++..++++.++|.+...... .........++.++.+.+...+.
T Consensus 13 ~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~~lg~~~~~~ 87 (1228)
T KOG0055|consen 13 VSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-----IASSEVSKVALYFVYLGVGVFIS 87 (1228)
T ss_pred cchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345667776655 456677777777777778888888999999987654321 11233445556666666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++..+..+.++|...++|..+++.+++++.+||+.+.+|++.+++++|++.+++.+.+-+..++..+.+++.++++.|
T Consensus 88 ~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F 167 (1228)
T KOG0055|consen 88 GFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGF 167 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
+..|+++++++.+.|++++....+.+.+.+...+.++..++..+...|++.++||+.+|+.|+.+.++|.+..+...+..
T Consensus 168 ~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~g 247 (1228)
T KOG0055|consen 168 YYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFG 247 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.+...+.++..++..++.....+..+|+|+.++..+..+.|.++.++.....-...+.+....+..+..+.+++.++++.
T Consensus 248 i~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~ 327 (1228)
T KOG0055|consen 248 IKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFET 327 (1228)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999988877666666777778888899999999999999999
Q ss_pred hcccCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 007152 348 LDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK 426 (616)
Q Consensus 348 l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~ 426 (616)
++..+...... .........+.|+|+||+|+||.+|+.++|+|+||+||+|+++|+||+|||||||+++||.|||+|++
T Consensus 328 i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 328 IDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred hcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 98766543221 12223345688999999999999988899999999999999999999999999999999999999999
Q ss_pred CEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 007152 427 GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 506 (616)
Q Consensus 427 G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~ 506 (616)
|+|++||.|+++++.+++|++||.|.|+|.||++||+|||+||+| ++|++++.+||+.+++++||.+||+||||++||+
T Consensus 408 G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~ 486 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP-DATREEIEEAAKAANAHDFILKLPDGYDTLVGER 486 (1228)
T ss_pred ceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHhhHHhhcccccCC
Confidence 999999999999999999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEE
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 586 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Iv 586 (616)
|.+|||||||||||||||++||+||||||||||||+++|+.|+++|++..+|+|+|+|||||+++++||+|+||++|+|+
T Consensus 487 g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~Iv 566 (1228)
T KOG0055|consen 487 GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIV 566 (1228)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhHHhhcCChhHHHHHHHhc
Q 007152 587 ESGTHEELLSKGGVYTALVKRQLQ 610 (616)
Q Consensus 587 e~G~~~eL~~~~~~y~~l~~~~~~ 610 (616)
|.|+|+||++.+|.|.+|++.|..
T Consensus 567 E~G~h~ELi~~~G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 567 EQGTHDELIALGGIYSSLVRLQEL 590 (1228)
T ss_pred EecCHHHHHhccchHHHHHHHHhh
Confidence 999999999999999999998853
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.1e-97 Score=834.82 Aligned_cols=568 Identities=29% Similarity=0.436 Sum_probs=499.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+++++++.+++++.+++.+++.++.+++.+..|++++.++|.+....... ......++++++++.++..++.+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 83 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP------LGLVAGLAAAYVGLQLLAAGLHY 83 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888999999999999999999999999999875432100 11112223334455566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 189 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 189 (616)
++++...+.+.++..++|.++|+++++.|+++|++.++|++++|+++|++.+++++...+..++.+++.+++++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (592)
T PRK10790 84 AQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSL 163 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 190 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 190 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
+|++++++++++|+.+++..++.++.++..++.++..++.++.+.|.+.|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (592)
T PRK10790 164 DWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQ 243 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888887777888888888888888899999999999999999999999999999999998888888777
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 270 QAKVVGLF-FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 270 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
..+..+.. ..+..++..+..+++++++++ +..|.+++|.++++..++..+..|+..+...+..++++..+++|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 322 (592)
T PRK10790 244 TLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM 322 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655543 333344444433334444444 6899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 349 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+.+++...... .+...+.|+|+||+|+||+ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+
T Consensus 323 ~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 323 DGPRQQYGNDD---RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred cCCCccCCCCc---cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 86543221111 1122357999999999984 347999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
|++||.|+++++++++|++|+||||||++|+|||||||++++ +++|++++++++.+|+++++++||+||||.+||+|.
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 999999999999999999999999999999999999999996 489999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
+|||||||||+||||++++|||+|||||||+||++||+.+.+.|+++.+++|+|+||||++.++.||+|++|++|+|++.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChhHHHHHHHhcC
Q 007152 589 GTHEELLSKGGVYTALVKRQLQE 611 (616)
Q Consensus 589 G~~~eL~~~~~~y~~l~~~~~~~ 611 (616)
|+|+||+++++.|+++++.|..+
T Consensus 556 G~~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 556 GTHQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred cCHHHHHhCCCHHHHHHHHHhhh
Confidence 99999999999999999988643
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.6e-97 Score=831.55 Aligned_cols=569 Identities=35% Similarity=0.564 Sum_probs=523.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++++.+++++.++++++++++.+++.+..|++++.++|....... ...+..++++++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~ 73 (571)
T TIGR02203 2 FRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--------RSVLWWVPLVVIGLAVLRGICSFV 73 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999999999999999997764321 112233344455666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
+.++..+.+.++...+|..+|+++++.|.+++++.++|++++|+++|++.+++++...+..++.+++.++++++++++++
T Consensus 74 ~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 153 (571)
T TIGR02203 74 STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|++++++++++|+.+++..++.++.++...+..+..+++.+.+.|.++|+++||.++.++.+.++|.+..++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+..+....+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+++++++.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (571)
T TIGR02203 234 TSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDS 313 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99888888888888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE
Q 007152 351 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 430 (616)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~ 430 (616)
+++.+.... +..+..+.|+++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|+
T Consensus 314 ~~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 314 PPEKDTGTR--AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CCCCCCCCC--CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 654332111 111234579999999999864 45799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 431 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 431 idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+||+|+++++.+++|++|+||||+|++|+|||||||+++++++.++++++++++.+++++++.++|+|+||.|||+|.+|
T Consensus 391 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred ECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 99999999999999999999999999999999999999975468999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
||||||||+||||++++|||+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCChhHHHHHHHhc
Q 007152 591 HEELLSKGGVYTALVKRQLQ 610 (616)
Q Consensus 591 ~~eL~~~~~~y~~l~~~~~~ 610 (616)
|+|++++++.|++++..+.+
T Consensus 551 ~~~l~~~~~~~~~~~~~~~~ 570 (571)
T TIGR02203 551 HNELLARNGLYAQLHNMQFR 570 (571)
T ss_pred HHHHHHcCCHHHHHHHHhhc
Confidence 99999999999999887643
No 19
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.5e-96 Score=822.44 Aligned_cols=565 Identities=30% Similarity=0.472 Sum_probs=505.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++++++++++.+.+.++++++..++.++.|++++.++|.+..... ...++++++++.++..+..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 75 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD-----------IFPLLAAWAGFGLFNIIAGVL 75 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999998764311 111122222333344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
..+...++..++...++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+..++..++.+++.++++++++
T Consensus 76 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (588)
T PRK13657 76 VARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMN 155 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777778888899999999999999999999999999999999998888888888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|++++++++++|+..++..++.++.++..++..+..+++.+.+.|.++|+++||.|+.++.+.++|.+..++..+...+.
T Consensus 156 ~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (588)
T PRK13657 156 WRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPV 235 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888889999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+.......+.+++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..+..+..+++|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~ 315 (588)
T PRK13657 236 LSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDA 315 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888888888888888999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE
Q 007152 351 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 430 (616)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~ 430 (616)
+++.+......+.++..+.|+++||+|+||++ +++|+|+||+++||+++||||+||||||||+|+|+|+|+|++|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 316 VPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred CcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 54432211111111223479999999999843 4699999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 431 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 431 idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+||+|+++++.+++|++|+||||+|++|+|||||||++++| +++|++++++++.+++++++.++|+|+||.+||+|.+|
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999987 78999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
||||||||+|||||+++|||+|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+
T Consensus 473 SgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~ 552 (588)
T PRK13657 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552 (588)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhHHhhcCChhHHHHHHHh
Q 007152 591 HEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 591 ~~eL~~~~~~y~~l~~~~~ 609 (616)
|+||+++++.|+++++.+.
T Consensus 553 ~~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 553 FDELVARGGRFAALLRAQG 571 (588)
T ss_pred HHHHHHCCChHHHHHHHhh
Confidence 9999999999999998664
No 20
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=8.1e-95 Score=810.62 Aligned_cols=565 Identities=29% Similarity=0.437 Sum_probs=507.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++++++++++.+++.++++++.+++.++.|+++++++|.+..... . . ..++.+++..++..+..++
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--------~--~-~~~~~~~~~~~~~~~~~~~ 75 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--------V--L-PTLALWAGFGVFNTIAYVL 75 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------H--H-HHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999999999999999998764321 0 0 1111222233445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
..+...+++.++..++|.++|++++++|+++|+++++|++++|+++|++.+.+++...+..++..++++++.+++++.++
T Consensus 76 ~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (585)
T TIGR01192 76 VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMD 155 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888999999999999999999999999999999999999999888888888888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|.+++++++++|++.++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|.+..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (585)
T TIGR01192 156 WRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPV 235 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+..+....+..++..+..++++++|++++.+|++|+|.++++..++..+..|+..+...+..++.+..+++|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 315 (585)
T TIGR01192 236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88887777777778888888889999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE
Q 007152 351 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 430 (616)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~ 430 (616)
+++..+.....+.+...+.|+++||+|+|++. +++|+|+||+|++|+++||+||||||||||+++|+|+|+|++|+|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 316 VFQREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CccccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 54432211111111223569999999999853 3689999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 431 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 431 idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+||.|+++++.+++|++++||||+|++|++|++|||+++.| ++++++++++++.+++++++.++|+|+||.+||+|.+|
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999987 68999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
||||||||+|||||+++|+++|||||||+||+++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~ 552 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGS 552 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhHHhhcCChhHHHHHHHh
Q 007152 591 HEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 591 ~~eL~~~~~~y~~l~~~~~ 609 (616)
|+|+++++|.|+++++.+.
T Consensus 553 ~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 553 FQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred HHHHHHCCChHHHHHHhCc
Confidence 9999999999999998775
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.7e-95 Score=814.56 Aligned_cols=569 Identities=41% Similarity=0.654 Sum_probs=512.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++++.+++++.+.+.+++.++..++.++.|++++.++|.+..... ...+..++++++++.++..++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 77 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--------SGLLNRYFAFLLVVALVLALGTAA 77 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999998653221 111222333444555566677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
+.+...+++.++...+|..+|+++++.|.++|++.++|++++|+++|++.+++++...+..++.+++.++++++++++++
T Consensus 78 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (576)
T TIGR02204 78 RFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITS 157 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998888888888989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|++++++++.+|+.+++..++.++.++..++..+..+++.+.+.|.++|+++||.++.|+.+.++|.+..++..+...+.
T Consensus 158 ~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (576)
T TIGR02204 158 PKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR 237 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++.++.+++|+.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~ 317 (576)
T TIGR02204 238 IRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA 317 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777777776667767777888899999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCC-CCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 351 VSSMPKSGNQ-CPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 351 ~~~~~~~~~~-~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
+++.+..... ....+..+.|+++||+|+||+..++++|+|+||+|+|||+++|+|+||||||||+|+|+|+|+|++|+|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 318 EPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 6542211111 111122346999999999986433579999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
++||+|+++++.+++|++|+|+||+|++|+|||||||++++| +.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 999999999999999999999999999999999999999987 6889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
|||||||||+||||++++||++|||||||+||+++|+.+.+.++++.+++|+|+||||++.++.||+|++|++|++++.|
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCChhHHHHHHH
Q 007152 590 THEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 590 ~~~eL~~~~~~y~~l~~~~ 608 (616)
+|++++++++.|+++++.|
T Consensus 557 ~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 557 THAELIAKGGLYARLARLQ 575 (576)
T ss_pred cHHHHHHcCChHHHHHhhc
Confidence 9999999999999999876
No 22
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-96 Score=756.97 Aligned_cols=556 Identities=32% Similarity=0.481 Sum_probs=492.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 45 LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVA 124 (616)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (616)
++.++++.+-+-++.+.+|.+++..+|.+......+ ...+.....++.++++-+..++++.++...+.++.+++.+
T Consensus 32 v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~----a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR 107 (591)
T KOG0057|consen 32 VFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP----AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIR 107 (591)
T ss_pred HHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc----chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444446788999999999999874211111 1122333456677788888999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHH
Q 007152 125 RLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG-FMFATSWKLTLLALVVVPA 203 (616)
Q Consensus 125 ~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~-~l~~~~~~l~li~l~~~~~ 203 (616)
+...++|++++++++++|.+..+|++.+.+.+....+..++...+..++..++.+.+... +-+...+..+++++..+..
T Consensus 108 ~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~ 187 (591)
T KOG0057|consen 108 DSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGA 187 (591)
T ss_pred HHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888888777776665544443 3344777777888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 204 ISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNA 283 (616)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (616)
+........++..+.+.+...+.++....+.|++.|.++||.||.|+++.++|.....++.+...+.....++.+++..+
T Consensus 188 Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~ 267 (591)
T KOG0057|consen 188 YAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKA 267 (591)
T ss_pred hheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHH
Confidence 77777777788888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 007152 284 ASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPL 363 (616)
Q Consensus 284 ~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~ 363 (616)
+.......+...|..-+.+|.+|+|+++.+..++.++..|+..++..+..+.++..-++.++.+.+......+. +.+.
T Consensus 268 iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i 345 (591)
T KOG0057|consen 268 IFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI 345 (591)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc
Confidence 99888888888888889999999999999999999999999999999999999998888777665433222111 1223
Q ss_pred CCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH
Q 007152 364 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 364 ~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~ 443 (616)
...++.|+|+||+|+|++ ++++|+++||+||+||+|||||+|||||||++++|+||++ ++|+|+|||+|++++++++
T Consensus 346 ~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~S 422 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLES 422 (591)
T ss_pred ccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHH
Confidence 334567999999999974 4579999999999999999999999999999999999999 9999999999999999999
Q ss_pred HhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 444 LHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+|+.|||||||..|||+||.+||.+|+| ++++||+.++|+.+++||.+.+||+||+|.|||+|..||||||||++||||
T Consensus 423 lR~~Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 423 LRQSIGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred hhhheeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHH
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTA 603 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~ 603 (616)
+++||||+++|||||+||.+||+.+.+.+.....+||+|+|.||++++++||+|+++|||++.|.|+|+||+++++.|++
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~ 581 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYAD 581 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHH
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 007152 604 LVKRQLQ 610 (616)
Q Consensus 604 l~~~~~~ 610 (616)
+|..|..
T Consensus 582 ~w~~~~~ 588 (591)
T KOG0057|consen 582 LWTTQTS 588 (591)
T ss_pred Hhccccc
Confidence 9987753
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-95 Score=807.98 Aligned_cols=525 Identities=24% Similarity=0.360 Sum_probs=467.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 32 GRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALR 111 (616)
Q Consensus 32 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (616)
++++++.+++++.+++.++++++.+++.++.|+++++++|.+..... ......++++++++.++..++.++.
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP--------VLYLSVAAVAVRAFGIGRAVFRYLE 73 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch--------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899989999999999999999999999999998753211 0011112222334456677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007152 112 AWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSW 191 (616)
Q Consensus 112 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 191 (616)
+++..+++.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++..++.++++++++++++|
T Consensus 74 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (529)
T TIGR02868 74 RLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSV 153 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999899899988888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 192 KLTLLALVVVPAISVAVRKF-GRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 192 ~l~li~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
.+++++++++|++.++...+ .+..++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus 154 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (529)
T TIGR02868 154 PAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRA 233 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877776655444 44456667777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+..+....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++.++.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (529)
T TIGR02868 234 ARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGA 313 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98888888888888888888889999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCC--CCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 351 VSSMPKSGNQ--CPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 351 ~~~~~~~~~~--~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+++.+..... .+..+..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 314 KGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred CCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 6543221111 1111223579999999999853 36999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
|++||+|++++ .+++|++|+||||||+||+|||||||++|+| +++||++++|++.|+++|+|++||+||||.|||+|.
T Consensus 392 I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~ 469 (529)
T TIGR02868 392 VTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGA 469 (529)
T ss_pred EEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccC
Confidence 99999999999 9999999999999999999999999999987 799999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 568 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 568 (616)
+||||||||||||||++++|||+||||||||||++||+.|.+++++..+++|+|+||||+
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999999988899999999996
No 24
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-95 Score=750.64 Aligned_cols=562 Identities=25% Similarity=0.340 Sum_probs=496.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 36 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 115 (616)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (616)
+..+++|+.+.+++++++++.+..+..-.+.+|+|..-.-.+. .....++...+++=++.+...+.+|..++..
T Consensus 9 ~l~~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~------~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvs 82 (573)
T COG4987 9 RLYKRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGL------AYIFNVMLPSAGVRGLAILRTAARYVERLVS 82 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334477889999999999999999999999999986432211 0111122233344456677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007152 116 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 195 (616)
Q Consensus 116 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 195 (616)
+....++...+|.++|+++...++.-..+.++||+++|+..|++.+++.|...+.+++..++...+..+.+.+++|++++
T Consensus 83 H~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Al 162 (573)
T COG4987 83 HDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLAL 162 (573)
T ss_pred hHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888889999998
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 196 LALVVV-PAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVV 274 (616)
Q Consensus 196 i~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (616)
.....+ .++++++..+.+.-++...+.....+.+.+++.|.++|..+.+.||.++.+.+.+.+....+.+.+.+..+..
T Consensus 163 ll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~ 242 (573)
T COG4987 163 LLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFT 242 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766654 4445666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCC
Q 007152 275 GLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLS-SLYTVAMKAAGASRRVFQLLDRVSS 353 (616)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ri~~~l~~~~~ 353 (616)
++..+...++..+..+..+.+.+-.+-.|..+.....++.......+.++..+. ..+....+...|++|+.++.+.+++
T Consensus 243 ~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e 322 (573)
T COG4987 243 GLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPE 322 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcc
Confidence 999999888888877755555566667777775555555556577777888887 7789999999999999999998776
Q ss_pred CCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 354 MPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 354 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
...+.+.. +.....++++||||+||+. +.++|+|+||++++||++||+|+||||||||+++|+|.|+|++|+|..+|
T Consensus 323 ~~~~~~~~--~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 323 VTFPDEQT--ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred cCCCcccc--CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 55331211 1122279999999999976 56899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 434 VPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 434 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
.|++.++.+++|+.|++++|.+++|++|+|||+.+++| ++|||+++++++.+||++++++.|+||+|++||+|.+||||
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 99999999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 593 (616)
|||||||||+|++|+|++||||||.+||++||+.+++.+.+..+|||+|+||||+..+++||+|+|||+|+|+|+|+|.|
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHH
Q 007152 594 LLSKGGVYTALVKR 607 (616)
Q Consensus 594 L~~~~~~y~~l~~~ 607 (616)
|++++|.|+++++.
T Consensus 559 Ll~~~g~~~~l~q~ 572 (573)
T COG4987 559 LLANNGRYKRLYQL 572 (573)
T ss_pred hhccccHHHHHhcc
Confidence 99999999999863
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-94 Score=803.95 Aligned_cols=549 Identities=30% Similarity=0.503 Sum_probs=492.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 51 ALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNL 130 (616)
Q Consensus 51 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 130 (616)
+.++.+++.++.|++++.++|.+...... ...+..++++++++.++..++.++.+++..+.+.++..++|.++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 75 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMT-------TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDF 75 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999999987543211 11222334445555666778889999999999999999999999
Q ss_pred HHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Q 007152 131 FSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM-FATSWKLTLLALVVVPAISVAVR 209 (616)
Q Consensus 131 ~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~li~l~~~~~~~~~~~ 209 (616)
|++++++|+++|++.++|++++|+++|++.+...+...+..++..++..+++++++ ++++|++++++++++|+..++..
T Consensus 76 ~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~ 155 (569)
T PRK10789 76 YRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIK 155 (569)
T ss_pred HHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887777777777666666665555 57999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 210 KFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSV 289 (616)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (616)
++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+........+..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (569)
T PRK10789 156 RYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMAN 235 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998888888877777777777778
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCc
Q 007152 290 IVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGE 369 (616)
Q Consensus 290 ~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 369 (616)
++++++|++++.+|.+|+|.++++..|...+..|+..++..+..++.+.++.+|+.++++.+++.+.... +.+...+.
T Consensus 236 ~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~~~~~ 313 (569)
T PRK10789 236 LLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPEGRGE 313 (569)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCCCCCc
Confidence 8888999999999999999999999999999999999999999999999999999999987654322111 11223357
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+|+|++. ++++|+|+||+|+||++++||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++
T Consensus 314 I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 314 LDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 9999999999854 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
||||+|++|++|++|||+++.| ++++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEccCCeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999987 689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHHh
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~~ 609 (616)
|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|+||+++++.|+++++.|.
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999998775
Q ss_pred c
Q 007152 610 Q 610 (616)
Q Consensus 610 ~ 610 (616)
.
T Consensus 552 ~ 552 (569)
T PRK10789 552 L 552 (569)
T ss_pred h
Confidence 4
No 26
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-97 Score=752.74 Aligned_cols=552 Identities=30% Similarity=0.444 Sum_probs=478.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 007152 45 LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIV------GSVCTALRAWLFSSA 118 (616)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 118 (616)
.+...++.++.-++....|.+.++++|.+.. +.... ... ......+.++ ..++.-++.++...+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~lta-p~~~~-----~~~----~~~~v~L~flqg~gtgsG~~~nlRtfLWi~V 286 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTA-PDTFQ-----YSL----VFLYVFLKFLQGGGTGSGFLNNLRTFLWIPV 286 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcC-cchhh-----HHH----HHHHHHHHHHhcCCccccchhhhheeEEEEh
Confidence 4445555667777889999999999998872 22111 111 1111112222 356777888888889
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHH
Q 007152 119 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGL-GFMFATSWKLTLLA 197 (616)
Q Consensus 119 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~-~~l~~~~~~l~li~ 197 (616)
++-..+++...+|+|+.++++.|+-.+.+|+++..+++..+.+. +....+.++...++-..+++ .+...++||.++++
T Consensus 287 qQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIV 365 (790)
T KOG0056|consen 287 QQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIV 365 (790)
T ss_pred hHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHH
Confidence 99999999999999999999999999999999999988887775 44444444443333333333 23445899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 198 LVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLF 277 (616)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (616)
+++..+++.+.........+.+++......+......|++-|.+++|-||+|+++.+||++...++.+...+......+.
T Consensus 366 fl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfL 445 (790)
T KOG0056|consen 366 FLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFL 445 (790)
T ss_pred HHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887766655555566666666666667777889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 007152 278 FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKS 357 (616)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 357 (616)
+...+.+..+..++--.+.+|+|..+.+++|+++.+..|+.++..|+.-++..+..+|++...++++++++++++|..+.
T Consensus 446 N~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~ 525 (790)
T KOG0056|consen 446 NIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL 525 (790)
T ss_pred HHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC
Confidence 88888887777777777788999999999999999999999999999999999999999999999999999988877655
Q ss_pred CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 007152 358 GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 437 (616)
Q Consensus 358 ~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~ 437 (616)
+...|.....|.|+|+||+|.|+. ++|+|+||||+++||+.+|+|||||+||||++++|.|||+.++|+|.|||+||+
T Consensus 526 P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 526 PGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 444455556789999999999974 568999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 438 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 438 ~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++...++|++||.||||..|||+||.+||.|++| .+++||+.+|+++|++||-|.++|+||+|.|||+|.+||||||||
T Consensus 604 nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 604 NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHHHHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 9999999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+||||+++++|.|++|||+|||||..||+.|+.++.++..++|.|+|+||++++-+||.|+|+++|+|+|+|+|+||+++
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CChhHHHHHHHhc
Q 007152 598 -GGVYTALVKRQLQ 610 (616)
Q Consensus 598 -~~~y~~l~~~~~~ 610 (616)
+|.|++||+.|+.
T Consensus 763 dgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 763 DGGAYADMWQAQQA 776 (790)
T ss_pred cCCcHHHHHHHHHh
Confidence 8999999987764
No 27
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.2e-92 Score=781.41 Aligned_cols=528 Identities=26% Similarity=0.391 Sum_probs=476.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 41 DAGKLIIATVALLIASVSSILIPKFGGKIIDIVS-GDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSAS 119 (616)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (616)
+++.+...++++++.+++.+..|+++++++|.+. .... ...+..+++++++++++..++.+++.++..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--------LAELLPALGALALAVLLRALLGWLGERAAARAA 72 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999874 3211 112333444555666778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007152 120 ERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALV 199 (616)
Q Consensus 120 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 199 (616)
.++..++|.++|++++++|..+|++.++|++++|+++|++.+++++...+..++..++.++++++++++++|++++++++
T Consensus 73 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~ 152 (529)
T TIGR02857 73 AAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLL 152 (529)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888888889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 200 VVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFG 279 (616)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (616)
++|+..++..++.++.++...+.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02857 153 TAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSA 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888888999999999999999999999999999999999999999999999988888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 007152 280 GLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGN 359 (616)
Q Consensus 280 ~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 359 (616)
+..++..+..+++++++++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+++|+.++++.+++..+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~ 312 (529)
T TIGR02857 233 VLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP 312 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC
Confidence 77777777777777778888889999999999999999999999999999999999999999999999985433221111
Q ss_pred CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC
Q 007152 360 QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI 439 (616)
Q Consensus 360 ~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~ 439 (616)
.+ ....+.|+++||+|+||++ ++++|+|+||+|+||+++|||||||||||||+|+|+|+|+|++|+|++||.|++++
T Consensus 313 -~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 313 -VT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA 389 (529)
T ss_pred -CC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC
Confidence 11 1123479999999999864 35799999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 440 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 440 ~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
+.+++|++++||||||++|++||+|||+++.| +++|++++++++.++++++++++|+||||.+||+|.+|||||||||+
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 99999999999999999999999999999987 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEE
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
||||++++|+++|||||||+||++||+.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999999988899999999999999999999986
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=9e-91 Score=773.82 Aligned_cols=541 Identities=25% Similarity=0.343 Sum_probs=480.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 39 KPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSA 118 (616)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (616)
+++++.++..++++++..++.++.|++++.++|.+..... ...++.++++++++.++..++.+++.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--------VPTLLMLTVLALGLYLFLGLLDALRSFVLVRI 73 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999999998763221 11233344555566677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007152 119 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLAL 198 (616)
Q Consensus 119 ~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 198 (616)
+.++..++|.++|+|++++|+. ..++..+++++|++.+++++.......+...+..++.++++++++|+++++++
T Consensus 74 ~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 148 (544)
T TIGR01842 74 GEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILAL 148 (544)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999984 33667889999999999988774444444444445556788999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 199 VVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 278 (616)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (616)
+++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+..+...
T Consensus 149 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (544)
T TIGR01842 149 GGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLS 228 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777778888888889999999999999999999999999999999999999999999999888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 007152 279 GGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSG 358 (616)
Q Consensus 279 ~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 358 (616)
....++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++.+..+.+|+.++++.+++.++..
T Consensus 229 ~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 308 (544)
T TIGR01842 229 NLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence 87778888888888999999999999999999999999999999999999999999999999999999998765432211
Q ss_pred CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 007152 359 NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 438 (616)
Q Consensus 359 ~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~ 438 (616)
+.+...+.|+++||+|+||+. ++++|+|+||+|+||+++||||+||||||||+++|+|+|+|++|+|.+||+|+.+
T Consensus 309 ---~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 309 ---PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred ---CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 111223579999999999754 3579999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 439 ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 439 ~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
++.+++|++++||||+|++|++|++|||+++++ ++++++++++++.++++++++++|+|+||.+||+|.+|||||||||
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred CCHHHHhhheEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 999999999999999999999999999998876 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+||||++++|+++|||||||+||+++|+.+.+.++++. +++|+|+||||++.++.||+|++|++|++++.|+|+|++++
T Consensus 464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999999999999875 68999999999999999999999999999999999999763
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.6e-91 Score=847.34 Aligned_cols=564 Identities=22% Similarity=0.284 Sum_probs=472.5
Q ss_pred hHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDA-GKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 30 ~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
.+..+..|++... ...++.+++.++..++....|+.++++.|......... . . ..++.+++++.++..++.
T Consensus 951 ~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~-~----~---~~~~~iy~~l~i~~~~~~ 1022 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQN-N----T---SLRLSVYGALGILQGFAV 1022 (1522)
T ss_pred cHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-C----c---chHHHHHHHHHHHHHHHH
Confidence 3444445555432 22333344445556677788888888777432110000 0 0 012224444555666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
++..++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++.++++++
T Consensus 1023 ~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1023 FGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888899999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 268 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 268 (616)
.+|+++++++.++++++++..++.+..++..+...+..+.+.+++.|+++|+++||+||+|+.+.+++.+..+...+..+
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88887776666666666666777777777778788888999999999999999999999999999999888888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 269 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI-TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.......+......++..+ ++++++++.+. .|.+++|.+.+++.|...+..|+..+...+..+..+.++++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555555444444332 33444444443 6889999999999999999999999999999999999999999999
Q ss_pred hcccCCCCC--CCCCCC-CCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 348 LDRVSSMPK--SGNQCP-LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 348 l~~~~~~~~--~~~~~~-~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
++.++|.+. .....+ ..+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 987765431 111111 11345789999999999854 34799999999999999999999999999999999999999
Q ss_pred CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc
Q 007152 425 IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG 504 (616)
Q Consensus 425 ~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg 504 (616)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||.... +++|+++++|++.|+++++|.++|+||||.||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS--QYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc--CCCHHHHHHHHHHcCcHHHHhhCccCCCceec
Confidence 9999999999999999999999999999999999999999998542 58999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
|+|.+||||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+|||+|+
T Consensus 1417 e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1417 EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEecChhHHhhcCChhHHHHHH
Q 007152 585 IVESGTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 585 Ive~G~~~eL~~~~~~y~~l~~~ 607 (616)
|+|.|+|+||++++|.|++|+++
T Consensus 1497 IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred EEEECCHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999986
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-89 Score=825.77 Aligned_cols=569 Identities=29% Similarity=0.413 Sum_probs=506.6
Q ss_pred hhHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALA-KPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 29 ~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
..+..++++. +++++.++++++++++.+++.++.|++++.++|.+.... .+..+++.++++.++..++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-----------~~~~~~~~~~~~~i~~~~~ 113 (1466)
T PTZ00265 45 IPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-----------NVNDIIFSLVLIGIFQFIL 113 (1466)
T ss_pred ccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHHH
Confidence 3567788775 457888999999999999999999999999999764211 0112233445556667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++.++..+++.++..++|.++|++++++|.+||++.++|++.+++++|++.+++.+...+..++..++++++++++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~ 193 (1466)
T PTZ00265 114 SFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL 193 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
+++|.+++++++++|+++++..++.+++++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+......+..
T Consensus 194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~ 273 (1466)
T PTZ00265 194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI 273 (1466)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG--------SMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAG 339 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 339 (616)
.+.....++...+..++..+..++++|+|++++.+| .+++|.++++..+......++..+...+..++.+.+
T Consensus 274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~ 353 (1466)
T PTZ00265 274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888888888888899999999999986 588999988776666656666677778899999999
Q ss_pred HHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 007152 340 ASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE 419 (616)
Q Consensus 340 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~ 419 (616)
+++|+.++++.+++.+........+. ...|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 354 a~~ri~~ii~~~~~~~~~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 354 ATNSLYEIINRKPLVENNDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHHcCCCCCCCCCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 99999999987765432111111111 23799999999998654457999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEE-CCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCC---------------------------
Q 007152 420 RFYDPIKGKILL-NGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD--------------------------- 471 (616)
Q Consensus 420 g~~~~~~G~I~i-dg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~--------------------------- 471 (616)
|+|+|++|+|++ ||.|+++++.+++|++|+||||+|.||++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 6799999999999999999999999999999999999742
Q ss_pred -----------------------------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 472 -----------------------------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 472 -----------------------------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
.++++++++++|+.+++++|+.+||+||||.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 135778999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCC-----------------
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDG----------------- 583 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G----------------- 583 (616)
|++++|+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999886 489999999999999999999999986
Q ss_pred ------------------------------EEEEecChhHHhh-cCChhHHHHHHHh
Q 007152 584 ------------------------------EIVESGTHEELLS-KGGVYTALVKRQL 609 (616)
Q Consensus 584 ------------------------------~Ive~G~~~eL~~-~~~~y~~l~~~~~ 609 (616)
+|+|+|||+||++ ++|.|+.|++.|.
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6999999998874
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-89 Score=832.35 Aligned_cols=564 Identities=20% Similarity=0.291 Sum_probs=443.6
Q ss_pred hHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDA--GKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 30 ~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
.+..+..|++... +.+++.+++.++..++.+..++.++...|........ ...++.+++++.++..++
T Consensus 900 ~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~----------~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 900 SWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG----------PLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc----------hhHHHHHHHHHHHHHHHH
Confidence 4555556655422 2333344445566667777788888877753321110 011233455556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++.++....+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~ 1049 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIG 1049 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999988888888888888888887777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
.++|...++++.+..+++.+..++.+..++..+......+...+++.|+++|+++||+|++++.+.+++.+..+...+..
T Consensus 1050 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1129 (1622)
T PLN03130 1050 IVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFT 1129 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 77774433333222222333344445566666666777888999999999999999999999877766665555444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS-MT-----PGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGAS 341 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~-~s-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (616)
+.......+......++. .+++++.+.+.+..+. .+ .+.+..++.+...+..++..+...+..++.+..++
T Consensus 1130 ~~~~~~~~wl~~~l~~~~---~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sv 1206 (1622)
T PLN03130 1130 LVNMSSNRWLAIRLETLG---GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAV 1206 (1622)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222 2222333334344332 11 23344444566667777777888888899999999
Q ss_pred HHHHHHhcccCCCCCC---CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 007152 342 RRVFQLLDRVSSMPKS---GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLI 418 (616)
Q Consensus 342 ~ri~~~l~~~~~~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL 418 (616)
+|+.++++.++|.+.. ..+.+..+..+.|+|+||+|+|++. .++||+|+||+|+|||+|||||+||||||||+++|
T Consensus 1207 eRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130 1207 ERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred HHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999887664321 1111112345689999999999643 34799999999999999999999999999999999
Q ss_pred HcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCc
Q 007152 419 ERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK 498 (616)
Q Consensus 419 ~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~G 498 (616)
+|+|+|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.+++ +++|+++++||+.|+++++|+++|+|
T Consensus 1286 ~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1286 FRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred hCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 9999999999999999999999999999999999999999999999999985 47999999999999999999999999
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEE
Q 007152 499 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 578 (616)
Q Consensus 499 ldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Ii 578 (616)
|||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl 1443 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhhc-CChhHHHHHHHh
Q 007152 579 VVSDGEIVESGTHEELLSK-GGVYTALVKRQL 609 (616)
Q Consensus 579 vl~~G~Ive~G~~~eL~~~-~~~y~~l~~~~~ 609 (616)
|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999987 699999997654
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-88 Score=821.99 Aligned_cols=503 Identities=21% Similarity=0.301 Sum_probs=433.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 105 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 184 (616)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 184 (616)
.++..++.+.....+.+....+|.++|+++++.|+.||+++++|++++|+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555556667778999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q 007152 185 FMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETL 264 (616)
Q Consensus 185 ~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 264 (616)
++++.+|.+.++++.+..++..+..++.+..++..+......+.+.+++.|+++|+++||+|+.++.+.++|.+..++..
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888886555444444444455566667777788888888999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 265 KLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANL--TITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASR 342 (616)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 342 (616)
+..+.......+......++..+..+++.+++.+. ...+.+++|.+.++..+...+..|+..+...+..++.+..+++
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666666666666666665555544444443 3355688999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCC-C--------------------------CCCC---CCCCCCCCcEEEEeEEEECCCCCCCcceecee
Q 007152 343 RVFQLLDRVSSMP-K--------------------------SGNQ---CPLGDQDGEVELDDVWFAYPSRPNHMVLKGIT 392 (616)
Q Consensus 343 ri~~~l~~~~~~~-~--------------------------~~~~---~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~is 392 (616)
|+.++++.+++++ . +..+ .+.++..+.|+|+||+|+|+++ .+++|+|+|
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vs 1330 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVS 1330 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecce
Confidence 9999996432211 0 0000 0111234679999999999754 346999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCC
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG 472 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~ 472 (616)
|+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-- 1408 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-- 1408 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC-CCEEEEeCcCCCCCHHHHHHHHHH
Q 007152 473 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN-PRILLLDEATSALDAESEYLVQDA 551 (616)
Q Consensus 473 ~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~-p~iliLDEpTSaLD~~te~~i~~~ 551 (616)
+++|+++++||+.|+++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||++||+.|++.
T Consensus 1409 ~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~ 1488 (1560)
T PTZ00243 1409 EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT 1488 (1560)
T ss_pred CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999996 899999999999999999999999
Q ss_pred HHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc-CChhHHHHHHHhc
Q 007152 552 MDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQ 610 (616)
Q Consensus 552 l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~-~~~y~~l~~~~~~ 610 (616)
|++..+++|+|+||||++++++||+|+||++|+|+|.|+|+||+++ ++.|++|++.+.+
T Consensus 1489 L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1489 VMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred HHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9998899999999999999999999999999999999999999985 8999999987643
No 33
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-91 Score=699.71 Aligned_cols=492 Identities=34% Similarity=0.473 Sum_probs=450.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 007152 112 AWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG-FMFATS 190 (616)
Q Consensus 112 ~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~-~l~~~~ 190 (616)
..++...++.....+--+.|.|+.++++.|+.++.+|.+-..+......+.......+.+++..++-+...++ +...++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 3445567778888889999999999999999999999998888888877777766666666666665554444 445699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|+.+++.++++.+++++........-...++..++.++.+....|++-+.+++|.||.|+++..+|.+.++.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999999888887766666666777778888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
....++++.+...+.......+...++..+..|++|+|+++....++.++..|+..++..+.++.++...+++.+++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCC-CCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 351 VSSMPKSGNQCPLG-DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 351 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
+.+..+.+...+.. -..+.+.|+||+|.|.. .+|+|+++||++++|+++||||+||+||||++++|.|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 77665443333333 33467999999999974 5689999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
.+||+|+++...+++|+.||.||||..||++|+..||.+|+| +++++|++.|++.+++++||+++|+||||.|||+|-.
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
||||||||+||||+++++|+|++|||+|||||.+||+.|+.+|++..+++|.++|+|||+++-+||+|+||++|+|+|+|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcCChhHHHHH
Q 007152 590 THEELLSKGGVYTALVK 606 (616)
Q Consensus 590 ~~~eL~~~~~~y~~l~~ 606 (616)
+|+||++++|.|++||.
T Consensus 480 ~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAAGGLYAEMWR 496 (497)
T ss_pred cHHHHHHcCChHHHHhc
Confidence 99999999999999995
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.3e-88 Score=820.38 Aligned_cols=510 Identities=22% Similarity=0.330 Sum_probs=418.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007152 94 ILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEAL 173 (616)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~ 173 (616)
+.+++++.++..++.+++.++....+.+...++|.++++++++.|++||+++++|++++|+++|++.+++.+...+..++
T Consensus 953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~ 1032 (1495)
T PLN03232 953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFM 1032 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 34455566667778888899999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH
Q 007152 174 RNLSTAFIGLGFMFATSWKLTLLALVVVPAIS-VAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE 252 (616)
Q Consensus 174 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 252 (616)
..++.+++.+++++.+++...+++ +++++++ ....++.+..++..+......+.+.+++.|+++|+++||+|+.++++
T Consensus 1033 ~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~ 1111 (1495)
T PLN03232 1033 NQLWQLLSTFALIGTVSTISLWAI-MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRM 1111 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHH
Confidence 877777777777777665433332 2233222 22333334455666777778889999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----C-HHHHHHHHHHHHHHHHHHHH
Q 007152 253 ISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI-TGSM----T-PGALTSFILYSLTVGSSVSG 326 (616)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~~----s-~g~l~~~~~~~~~~~~~~~~ 326 (616)
.+++.+..+...+..+.......+....... +..+++++.+.+.+. .|.+ . .+.+..+..+...+..|+..
T Consensus 1112 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~ 1188 (1495)
T PLN03232 1112 AKINGKSMDNNIRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSG 1188 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 7776666555444433222222222211111 222222333334443 3432 1 23334466778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCC-CC--CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEE
Q 007152 327 LSSLYTVAMKAAGASRRVFQLLDRVSSMPKS-GN--QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIAL 403 (616)
Q Consensus 327 l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~--~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaI 403 (616)
+...+..++.+.++++|+.++++.++|.+.. .. +.+..+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++||
T Consensus 1189 l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaI 1267 (1495)
T PLN03232 1189 VLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGV 1267 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEE
Confidence 9999999999999999999999877664321 11 11112344679999999999643 35799999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHH
Q 007152 404 VGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA 483 (616)
Q Consensus 404 vG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al 483 (616)
||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+||+|||||||.+++ +++|+++++|+
T Consensus 1268 VG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al 1345 (1495)
T PLN03232 1268 VGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEAL 1345 (1495)
T ss_pred ECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999984 58999999999
Q ss_pred HHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEE
Q 007152 484 KMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLV 563 (616)
Q Consensus 484 ~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ 563 (616)
+.|+++++|+++|+||||.|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+
T Consensus 1346 ~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~ 1425 (1495)
T PLN03232 1346 ERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLV 1425 (1495)
T ss_pred HHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC-ChhHHHHHHHhc
Q 007152 564 IAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG-GVYTALVKRQLQ 610 (616)
Q Consensus 564 ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~-~~y~~l~~~~~~ 610 (616)
||||++++++||+|+|||+|+|+|.|+|+||++++ +.|++|++.+..
T Consensus 1426 IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1426 IAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999886 589999987653
No 35
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=2e-86 Score=679.44 Aligned_cols=544 Identities=26% Similarity=0.346 Sum_probs=494.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 37 LAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFS 116 (616)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (616)
.....++.++...+++.+-.++.+..|.++-.+.|.+..... ...+..+.++.++++++..++.+++.....
T Consensus 17 ~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s--------~~TLv~Ltvlal~ly~~~glLd~iR~~~l~ 88 (580)
T COG4618 17 VLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS--------VPTLVMLTVLALGLYAFQGLLDAIRSRVLV 88 (580)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677778888888899999999999999999986542 334455566667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007152 117 SASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLL 196 (616)
Q Consensus 117 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 196 (616)
+++.++..++...+|....+.+... +.+|+=.+-+ +|.++++.|++..-+..+.+..++.+++.++|.++|+++++
T Consensus 89 Rig~~lD~~L~~~v~~a~~~~~l~~---~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~ 164 (580)
T COG4618 89 RIGERLDRQLNGPVFAASFSAPLLR---RGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLI 164 (580)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHhh---cCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777654 3445444545 59999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 197 ALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGL 276 (616)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (616)
.+++..++..+..+-.+..++-.++..+...+.+.....+..|.++|++.|..+...++|.+.+..+...+.+..-..+.
T Consensus 165 a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~ 244 (580)
T COG4618 165 ALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGA 244 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99988888877777777788888888888999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 007152 277 FFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPK 356 (616)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 356 (616)
+..++..+-++.+..++.+|+|++.+|++|.|.+++-..++.+...|+......|.++..++.+++|+.+++...++..
T Consensus 245 ~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~- 323 (580)
T COG4618 245 FGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA- 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeC
Q 007152 357 SGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 436 (616)
Q Consensus 357 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i 436 (616)
...+.|+..+.+.++++++.=|+. ++|+|+|+||++++|+.+|||||||||||||+++|.|.++|.+|.|++||-|+
T Consensus 324 --~~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 324 --ERMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred --CCCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 223455667889999999987765 67999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 437 VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 437 ~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
++++++++-++|||.|||..||+|||+|||+-..+ +++++.+.+|++.|+.||.|.+||+||||.|||+|..|||||||
T Consensus 401 ~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 401 RQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hcCCHHHhccccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 99999999999999999999999999999998876 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
||+||||||.||.+++||||.|+||.+.|+.+.++|.+.+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|.+
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 9999999999999999999999999999999999998775 689999999999999999999999999999999999998
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
++
T Consensus 560 a~ 561 (580)
T COG4618 560 AK 561 (580)
T ss_pred HH
Confidence 74
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-84 Score=787.26 Aligned_cols=503 Identities=17% Similarity=0.251 Sum_probs=429.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 102 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFI 181 (616)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~ 181 (616)
++..++.+++.++..+.+.+...+++.++++++++.|++||+++++|++++|+++|++.+++.+...+..++..++.+++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888889999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHH
Q 007152 182 GLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVD 261 (616)
Q Consensus 182 ~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~ 261 (616)
.++++++++|+++++++.++++++.+..++.+..++..+......+.+.+++.|+++|+.+||+|++++.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 88899999998776655555555555566667777777778888899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 262 ETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGAS 341 (616)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 341 (616)
...+..+.......+......++..+..+++.++ .+.....+.|.+..+..+...+..++..+...+..+.....++
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7655554444433344333333332222221111 1112235566677777788888889999999999999999999
Q ss_pred HHHHHHhcccCCCCCCCC-----------------CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEE
Q 007152 342 RRVFQLLDRVSSMPKSGN-----------------QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALV 404 (616)
Q Consensus 342 ~ri~~~l~~~~~~~~~~~-----------------~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIv 404 (616)
+|+.++++.++|.+.... +.+..+..+.|+|+||+|+|++. .+++|+|+||+|+|||+||||
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEE
Confidence 999999987665432100 00111334689999999999854 458999999999999999999
Q ss_pred CCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHH
Q 007152 405 GPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAK 484 (616)
Q Consensus 405 G~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~ 484 (616)
|+||||||||+++|+|+|+ ++|+|+|||+|+++++.+++|++|+||||||+||+|||||||.+.. +++|+++++||+
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--~~tdeei~~aL~ 1328 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--QWSDEEIWKVAE 1328 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--CCCHHHHHHHHH
Confidence 9999999999999999997 7999999999999999999999999999999999999999998763 589999999999
Q ss_pred HcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Q 007152 485 MANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVI 564 (616)
Q Consensus 485 ~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~I 564 (616)
.++++++|.++|+||||+|||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+|
T Consensus 1329 ~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~I 1408 (1490)
T TIGR01271 1329 EVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408 (1490)
T ss_pred HCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred ecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHHhcC
Q 007152 565 AHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 611 (616)
Q Consensus 565 tHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~~~~ 611 (616)
|||++++.+||+|+||++|+|+|.|+|+||+++++.|++|++.+.+.
T Consensus 1409 aHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred ecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999877643
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.5e-84 Score=723.93 Aligned_cols=533 Identities=18% Similarity=0.181 Sum_probs=451.9
Q ss_pred hHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAK-PDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 30 ~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
.+++++++++ ++++.++++++++++.+++.+..|++++.++|....... ..+ ..++++.++..++.
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---------~~~----~~~~~~~~~~~~~~ 70 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ---------GSL----FSFGGLCLLALLFR 70 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---------hHH----HHHHHHHHHHHHHH
Confidence 5678888999 999999999999999999999999999998874311000 011 11223344556788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
++..++..+.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.+++.++++++
T Consensus 71 ~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 71 IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998864 77778888888888889999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEK--NEISRYSEKVDETLKL 266 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~ 266 (616)
++|.+++++++++|+.+++..++.++.++...+.++..+++++.+.|.+.|++++|+|+.++ ...+++.+..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998888888888778788888888888999999999999999999999999954 5678888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 267 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQ 346 (616)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~ 346 (616)
..+..+.......+..++..+...++++++++ .|.+|+|.++++..+...+..|+..+.+.+..++++.++++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665555444444444443333334444443 378999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCC---CC--CCC---CCCCCCCcEEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHH
Q 007152 347 LLDRVSSMPK---SG--NQC---PLGDQDGEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIAN 416 (616)
Q Consensus 347 ~l~~~~~~~~---~~--~~~---~~~~~~~~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~ 416 (616)
+++.+++.+. .+ ... +.....+.|+++||+|+|++.+ ++++|+|+||+|++|+++|||||||||||||++
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 9864221110 00 000 1112235799999999998531 236999999999999999999999999999999
Q ss_pred HHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCC
Q 007152 417 LIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 496 (616)
Q Consensus 417 lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp 496 (616)
+|+|+|+|++|+|.+||.|+++++.+++|++++||+||+++|++|+++|+ .| ++++++++++++.++++++++.+|
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp 462 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIED 462 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhcccc
Confidence 99999999999999999999999999999999999999999999999995 34 678999999999999999999999
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-hCCCeEEEEecCchhhhhc
Q 007152 497 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMD-SL-MKGRTVLVIAHRLSTVQSA 574 (616)
Q Consensus 497 ~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~-~~-~~~~T~I~ItHrl~~l~~a 574 (616)
+||||. .+|||||||||+||||++++|||+|||||||+||++||+.+.+.+. .. .+++|+|+||||+++++.|
T Consensus 463 ~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~ 537 (555)
T TIGR01194 463 GGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537 (555)
T ss_pred cccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 999995 7899999999999999999999999999999999999999998874 33 3689999999999999999
Q ss_pred CEEEEEeCCEEEEe
Q 007152 575 DTVAVVSDGEIVES 588 (616)
Q Consensus 575 D~Iivl~~G~Ive~ 588 (616)
|+|++|++|+|+|.
T Consensus 538 d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 538 DQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999875
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.2e-84 Score=787.05 Aligned_cols=546 Identities=21% Similarity=0.297 Sum_probs=447.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 37 LAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFS 116 (616)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (616)
+++.+++.++...++.++..++.++.|++++.++|.+..... . .. .+.+++++++..++..++.....+...
T Consensus 295 l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~-----~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~ 366 (1495)
T PLN03232 295 LNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-A-----WV--GYVYAFLIFFGVTFGVLCESQYFQNVG 366 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c-----ch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888899999999999999999998754321 0 01 111222233333333444332333346
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007152 117 SASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLL 196 (616)
Q Consensus 117 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 196 (616)
+++.++...++..+|+|+++++...+++.++|++++++++|++.+++++ ..+..++..++.+++++++++..-.+.+++
T Consensus 367 ~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~ 445 (1495)
T PLN03232 367 RVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLF 445 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 8899999999999999999999999999999999999999999999986 567777776666666655554322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 197 ALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGL 276 (616)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (616)
.++++++++++..++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....+.
T Consensus 446 ~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~ 525 (1495)
T PLN03232 446 GSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAF 525 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333344566778899999999999999999999999999999999999999999999888888877776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 007152 277 FFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPK 356 (616)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 356 (616)
...+..... ..+.++++|++.+.+|.+|+|.++++..+...+..|+..++..+..+.++.++++|+.++++.+++...
T Consensus 526 ~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~ 603 (1495)
T PLN03232 526 NSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA 603 (1495)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 433322222 223346778899999999999999999999999999999999999999999999999999986543221
Q ss_pred CCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeC
Q 007152 357 SGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 436 (616)
Q Consensus 357 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i 436 (616)
... +.....+.|+++|++|+|++.+++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+.
T Consensus 604 ~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------ 675 (1495)
T PLN03232 604 QNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------ 675 (1495)
T ss_pred ccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------
Confidence 111 111123469999999999864346899999999999999999999999999999999999999998763
Q ss_pred CCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 437 VEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 437 ~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.+|++|+||||+||||+|||||||+||+| +++++++++++.|+++++++.||+|+||.|||+|.+|||||||
T Consensus 676 ------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQ 747 (1495)
T PLN03232 676 ------VIRGSVAYVPQVSWIFNATVRENILFGSD--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQ 747 (1495)
T ss_pred ------EecCcEEEEcCccccccccHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHH
Confidence 36779999999999999999999999975 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~-l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|||||||+|++|||+||||||||||+++|+.+.+. ++...+++|+|+||||++.++.||+|++|++|+|+++|+|+||+
T Consensus 748 RIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 748 RVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999999999988765 56666899999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHh
Q 007152 596 SKGGVYTALVKRQL 609 (616)
Q Consensus 596 ~~~~~y~~l~~~~~ 609 (616)
++++.|+++++.+.
T Consensus 828 ~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 828 KSGSLFKKLMENAG 841 (1495)
T ss_pred hcchhHHHHHHhcc
Confidence 99999999987654
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.9e-84 Score=782.50 Aligned_cols=545 Identities=20% Similarity=0.291 Sum_probs=447.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 37 LAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFS 116 (616)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (616)
+++.+++.+++.+++.++..++.++.|++++.++|.+..... . ... +.+.+++++..++..++..-..+...
T Consensus 295 l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~------~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~ 366 (1622)
T PLN03130 295 LNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-A------WIG-YIYAFSIFVGVVLGVLCEAQYFQNVM 366 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888999999999999999999998754321 0 011 11111222222222222211122245
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007152 117 SASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLL 196 (616)
Q Consensus 117 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 196 (616)
+++.++...++..+|+|+++++...+++.++|++++++++|++.+.+++ ..++.++..++.+++++++++..-++.+++
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~ 445 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLI 445 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999987 457777777777777766666544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 197 ALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGL 276 (616)
Q Consensus 197 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (616)
.++++++.+++..++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.......
T Consensus 446 g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~ 525 (1622)
T PLN03130 446 GSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF 525 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556667788889999999999999999999999999999999999999999998888877666655555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 007152 277 FFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPK 356 (616)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 356 (616)
...+..... ..+.++++|++.+.+|.+|+|.++++..++..+..|+..++..+..+.++.++++|+.++++.++....
T Consensus 526 ~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 526 NSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 333322222 134566778899999999999999999999999999999999999999999999999999976543211
Q ss_pred CCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-CEEEECCEe
Q 007152 357 SGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK-GKILLNGVP 435 (616)
Q Consensus 357 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~-G~I~idg~~ 435 (616)
... +.....+.|+++|++|+|++.+++++|+|+||+|++|+++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 604 ~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---- 677 (1622)
T PLN03130 604 PNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---- 677 (1622)
T ss_pred cCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----
Confidence 111 11112246999999999985434689999999999999999999999999999999999999999 99985
Q ss_pred CCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 436 LVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 436 i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
|++|+||||+||||+|||||||+||+| +++++++++++.|+++++++.||+|++|.|||+|.+||||||
T Consensus 678 ---------~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQK 746 (1622)
T PLN03130 678 ---------RGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746 (1622)
T ss_pred ---------cCeEEEEcCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHH
Confidence 458999999999999999999999976 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQ-DAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~-~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|||+||||+|++|||+||||||||||+++++.+. ++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+||
T Consensus 747 QRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL 826 (1622)
T PLN03130 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826 (1622)
T ss_pred HHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999998876 456767789999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHh
Q 007152 595 LSKGGVYTALVKRQL 609 (616)
Q Consensus 595 ~~~~~~y~~l~~~~~ 609 (616)
+++++.|+++++.+.
T Consensus 827 ~~~~~~~~~l~~~~~ 841 (1622)
T PLN03130 827 SNNGPLFQKLMENAG 841 (1622)
T ss_pred HhcchhHHHHHHhcc
Confidence 999999999987653
No 40
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-84 Score=747.02 Aligned_cols=572 Identities=25% Similarity=0.362 Sum_probs=486.3
Q ss_pred cchhHHHHHHhhhh-hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007152 27 ANVGFGRVLALAKP-DAGKLII-ATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 104 (616)
Q Consensus 27 ~~~~~~~l~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (616)
....|+-+..|++. ..+...+ .+++.++..++....-+.+.+..|.-......+ .....++.++.++.++.
T Consensus 799 G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~-------~~~~~~~~vY~~l~~~~ 871 (1381)
T KOG0054|consen 799 GKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT-------VSTSFYLGVYALLGVAS 871 (1381)
T ss_pred CEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC-------CCcchHHHHHHHHHHHH
Confidence 45566667777776 3233222 234444555566666666666666432211000 00112344555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 105 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 184 (616)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 184 (616)
.++..++.+.....+.+....+...+++++++.|++||+.+++|.++||++.|++.+++.+...+..++...+.++..++
T Consensus 872 ~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 872 SLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHH
Q 007152 185 FMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETL 264 (616)
Q Consensus 185 ~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 264 (616)
++.+..|+..++++.+..+++.+..++.+-.++..+-....++...+++.|+++|+.|||+|+.++++.+++.+..+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999999988888888888888888888888888888889999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 265 KLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRV 344 (616)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri 344 (616)
+..+-......++..-.+++..+..+.+..+....- .+.+++|.+...++|...+...++.+.....++....+|++|+
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~-~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv 1110 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP-SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERV 1110 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 877766655556555666666555444444333222 2227899999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCC---CCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 345 FQLLDRVSSMPK---SGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 345 ~~~l~~~~~~~~---~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
.+..+.|+|.+. ...+++..+..|.|+|+|++.+|.++ .++||+||||+|+|||+|||||++|||||||++.|.|+
T Consensus 1111 ~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1111 LEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred HHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 999998776221 11123345678999999999999754 46899999999999999999999999999999999999
Q ss_pred CCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccc
Q 007152 422 YDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT 501 (616)
Q Consensus 422 ~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT 501 (616)
.+|.+|+|.|||+|+.++++.++|++++.+||||.||+||+|.||...+ +++|+++|+|++.|+|.++|.++|.|+|+
T Consensus 1190 ~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~--e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~ 1267 (1381)
T KOG0054|consen 1190 VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD--EYSDDEIWEALERCQLKDVVSSLPGGLDS 1267 (1381)
T ss_pred cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc--ccCHHHHHHHHHHhChHHHHhhCCcCCCc
Confidence 9999999999999999999999999999999999999999999998773 68999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEe
Q 007152 502 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 502 ~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~ 581 (616)
.|.|+|.|+|-||||-+||||||+|+++||||||||+++|++|+..|++.|++..+++|+|.|+||++++.++|||+|||
T Consensus 1268 ~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld 1347 (1381)
T KOG0054|consen 1268 EVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLD 1347 (1381)
T ss_pred eecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhHHhhc-CChhHHHHHHHh
Q 007152 582 DGEIVESGTHEELLSK-GGVYTALVKRQL 609 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~-~~~y~~l~~~~~ 609 (616)
+|+|+|.|++++|+++ ++.|++++.+..
T Consensus 1348 ~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1348 AGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred CCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 9999999999999976 677766665543
No 41
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.8e-83 Score=734.77 Aligned_cols=549 Identities=22% Similarity=0.306 Sum_probs=481.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 36 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 115 (616)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (616)
...+.+++.+++..++..+...+..+.|.++..+|+.+...+.. ....+.+.+++++..++..++.....+..
T Consensus 194 al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~-------~~~g~~~a~~lf~~~~l~~l~~~~~~~~~ 266 (1381)
T KOG0054|consen 194 ALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLP-------LNNGYLLAVLLFLASLLQSLLLHQYFFVS 266 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcc-------cchhHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34455778887888888888888999999999999998764221 11223445566666777777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007152 116 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 195 (616)
Q Consensus 116 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 195 (616)
.+.+.++...+-..+|+|.++++...-...+.|+++|.+++|++++.++.. .++.+|..++.+++++++++..-.+-++
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~ 345 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSAL 345 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 899999999999999999999999998899999999999999999988864 5888999999999999999998888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 196 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVG 275 (616)
Q Consensus 196 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (616)
+.++++.+++.+..++.+++++.+.+.++..+++.+.++|.++||++||+|+||+.|.++.++..++..+...+.....+
T Consensus 346 ~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 346 AGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 007152 276 LFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMP 355 (616)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 355 (616)
...+.....+.+..++.+....+ ...+.+++...++...++..+..|+..++..+..+.++.++++|+.+++..++..+
T Consensus 426 ~~~~~~~~~p~lv~~~tF~~~v~-~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~ 504 (1381)
T KOG0054|consen 426 LNSFLNFFSPVLVSVVTFVVFVL-LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDP 504 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCc
Confidence 77777666666655555443332 45678888899999999999999999999999999999999999999998765433
Q ss_pred CCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe
Q 007152 356 KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP 435 (616)
Q Consensus 356 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~ 435 (616)
+.....+..+.+..|+++|.+|+|++..+.+.|+||||+|++|+.+||||+.|||||+|+..|+|.++..+|++.++|
T Consensus 505 ~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-- 582 (1381)
T KOG0054|consen 505 DSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-- 582 (1381)
T ss_pred cccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC--
Confidence 322211223344579999999999864345699999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 436 LVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 436 i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
.++||||+||||+|||||||+||.| +++++++++++.|+|+.+++.||.|+.|.|||+|.+||||||
T Consensus 583 -----------siaYv~Q~pWI~ngTvreNILFG~~--~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 583 -----------SVAYVPQQPWIQNGTVRENILFGSP--YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred -----------eEEEeccccHhhCCcHHHhhhcCcc--ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 6999999999999999999999975 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i-~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|||+||||+|+|+||++||||.||+|+++.+.+ .++|+.+.++||+|+|||+++.+++||+|++|+||+|++.|+|+||
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 999999999999999999999999999955555 5567788899999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHH
Q 007152 595 LSKGGVYTALVKRQ 608 (616)
Q Consensus 595 ~~~~~~y~~l~~~~ 608 (616)
++.++.|.++..+.
T Consensus 730 ~~~~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 730 LKSGGDFAELAHEE 743 (1381)
T ss_pred HhcchhHHHHhhcc
Confidence 99999999885443
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7.5e-79 Score=678.06 Aligned_cols=531 Identities=18% Similarity=0.192 Sum_probs=425.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 34 VLALAKPDAGKLIIATVALLIASVSSILI-PKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 112 (616)
Q Consensus 34 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (616)
+.++++++++.+++.++++++.+++.+.. |++.++++|.+.... ..+..+. ++.++..++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~ 69 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL----------LVLPEFL----GLLLLLMAVTLGSQ 69 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----------hHHHHHH----HHHHHHHHHHHHHH
Confidence 44667788899999999999999998875 788889999653210 0111111 11122234667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007152 113 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 192 (616)
Q Consensus 113 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 192 (616)
+....++.++..++|.++|++++++|+++|+++++|++++|+++|++.+..++. .++.++.+++.++++++++++++|+
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~ 148 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK 148 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888899999999999999999999999999999999999999999999998765 4677888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch---HHHHHHHHHHHHHHHHHHHH
Q 007152 193 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQE---KNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 193 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~ 269 (616)
+++++++++|+.+++..++.++.++...+.++..+++++.+.|.++|+++++ ++.+ +.+.+++++..++..+...+
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIR 227 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence 9999999999988888888899898889999999999999999999999996 4443 45678888877777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 349 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~ 349 (616)
..+.......+..++..+...+.+++++.. +..+.+.+.++..+...+..|+..+...+..++.+..+++|+.++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 228 ADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554444333322222222111122222221 12244444545555555778999999999999999999999999976
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 350 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
.+++.+... ..+.+ ..+.|+++||+|+||++ +++|+|+||+|+||+++|||||||||||||+++|+|+|+|++|+|
T Consensus 305 ~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i 380 (547)
T PRK10522 305 APYKAEFPR-PQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (547)
T ss_pred ccccccccc-ccccC-cCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 543221111 11111 12479999999999843 469999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
++||+|+++++.+++|++++||||||++|++|++|| + + +.++++++++++.+++++++. +|+|. .+|.+
T Consensus 381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~ 449 (547)
T PRK10522 381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLE-LEDGR-----ISNLK 449 (547)
T ss_pred EECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhh-ccccC-----CCCCC
Confidence 999999999999999999999999999999999999 3 3 578888999999998887765 35553 25899
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
|||||||||+||||++++|+++|||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|
T Consensus 450 LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997654 4899999999999999999999999999998
Q ss_pred e-cChhHHhhcC
Q 007152 588 S-GTHEELLSKG 598 (616)
Q Consensus 588 ~-G~~~eL~~~~ 598 (616)
. |+|.+-..++
T Consensus 530 ~~~~~~~~~~~~ 541 (547)
T PRK10522 530 LTGEERDAASRD 541 (547)
T ss_pred ecCCchhhhhhh
Confidence 6 7777665544
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.8e-77 Score=724.79 Aligned_cols=547 Identities=18% Similarity=0.246 Sum_probs=453.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 36 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 115 (616)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (616)
.+++.+++.++..+++.++..++.++.|++++.++|.+..... +. ...+.++.+++++.++..++.....+..
T Consensus 310 ~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1522)
T TIGR00957 310 VLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-PD------WQGYFYTGLLFVCACLQTLILHQYFHIC 382 (1522)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888999999999999999999998754321 10 0112233334444445555555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007152 116 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 195 (616)
Q Consensus 116 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 195 (616)
.+++.++...++..+|+|+++++...+++.++|+++|++++|++.+.+.. ..++.++..++.+++++++++..-.+.++
T Consensus 383 ~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l 461 (1522)
T TIGR00957 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVL 461 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 88999999999999999999999999999999999999999999998865 56777887777777777666655555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 196 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVG 275 (616)
Q Consensus 196 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (616)
+.++++++++++..++.+++++.+++.++..+++.+.+.|.++|+++||++++|+.+.+++++..++..+...+......
T Consensus 462 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~ 541 (1522)
T TIGR00957 462 AGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHA 541 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777778888999999999999999999999999999999999999999999999988887776655555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 007152 276 LFFGGLNAASTLSVIVVVIYGANLTI--TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSS 353 (616)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~g~~~v~--~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 353 (616)
.......... ..+.++.++.+.+. .+.++++.+++.+.++..+..|+..++..+..+.++.++++|+.++++.+++
T Consensus 542 ~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 619 (1522)
T TIGR00957 542 VGTFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEEL 619 (1522)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 3332211111 11222334556665 3578999999988999999999999999999999999999999999986543
Q ss_pred CCCCCCCCCCC-CCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC
Q 007152 354 MPKSGNQCPLG-DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 432 (616)
Q Consensus 354 ~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id 432 (616)
.+......... ...+.|+++|++|+|++. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+|
T Consensus 620 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~ 698 (1522)
T TIGR00957 620 EPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK 698 (1522)
T ss_pred ccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC
Confidence 22111101111 112369999999999753 3579999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 433 GVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 433 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
| +|+||||+|++|++||+|||.+|.+ .++++++++++.|++.++++.+|+|++|.+||+|.+|||
T Consensus 699 g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSG 763 (1522)
T TIGR00957 699 G-------------SVAYVPQQAWIQNDSLRENILFGKA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSG 763 (1522)
T ss_pred C-------------EEEEEcCCccccCCcHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCH
Confidence 8 6999999999999999999999965 678889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHH---HhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS---LMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~---~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
|||||++||||++++|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.++.||+|++|++|+|+++|
T Consensus 764 GQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMG 843 (1522)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeC
Confidence 999999999999999999999999999999999999999853 45789999999999999999999999999999999
Q ss_pred ChhHHhhcCChhHHHHHHH
Q 007152 590 THEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 590 ~~~eL~~~~~~y~~l~~~~ 608 (616)
+|+|++++++.|.++++.+
T Consensus 844 ~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 844 SYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred CHHHHHhcchhHHHHHHhh
Confidence 9999999999999988744
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.4e-74 Score=647.23 Aligned_cols=530 Identities=17% Similarity=0.160 Sum_probs=448.3
Q ss_pred hHHHHHHhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAG-----KLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 104 (616)
Q Consensus 30 ~~~~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (616)
.+++++++++|+++ .+++.+++.++.+++.+..|++.+.++|.+..... ......+..++++++++.++.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-----~~f~~~l~~~~l~~~~~~~~~ 152 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-----RNFAWILFKWFLIAPPASFIN 152 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888876 57788888888999999999999999998864321 001111233444455556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 105 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 184 (616)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 184 (616)
.+..++..++...+..++...++...|++....+..+|++ ++|++.+|+++|++.+.+.+...+..++..++.++++++
T Consensus 153 ~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~ 231 (659)
T TIGR00954 153 SAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSF 231 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888899999999999999988888888886 789999999999999999999999999999988888888
Q ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHH
Q 007152 185 FMFA-TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDET 263 (616)
Q Consensus 185 ~l~~-~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 263 (616)
.++. ++|.+++++++.+|+..++.+++.+++.+...+.++..+++.+.+.|.++|+++||+|+.|+.+.+++.+..++.
T Consensus 232 ~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l 311 (659)
T TIGR00954 232 KLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL 311 (659)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7886 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHH
Q 007152 264 LKLGLQQAKVVGLFFGGLNAASTL--SVIVVVIYGANLTI-T----GSMTPGALTS-FILY---SLTVGSSVSGLSSLYT 332 (616)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~~s~g~l~~-~~~~---~~~~~~~~~~l~~~~~ 332 (616)
.+...+..+..+.+..+..++... ..+++++.|...+. + |.+|+|.+++ ++.+ +..+..|+..+.+.+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~ 391 (659)
T TIGR00954 312 VEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGR 391 (659)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888777643 33333344443332 2 7899998766 5544 6677999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCC-------CCC---C-------------CCCCCCCCcEEEEeEEEECCCCCCCccee
Q 007152 333 VAMKAAGASRRVFQLLDRVSSMPK-------SGN---Q-------------CPLGDQDGEVELDDVWFAYPSRPNHMVLK 389 (616)
Q Consensus 333 ~~~~~~~~~~ri~~~l~~~~~~~~-------~~~---~-------------~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~ 389 (616)
.++++.++.+|+.++++.+++... ... . .......+.|+++||+|+||++ +++|+
T Consensus 392 ~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~ 469 (659)
T TIGR00954 392 DMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIE 469 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeee
Confidence 999999999999999975432110 000 0 0011123469999999999743 36999
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcC
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYG 469 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g 469 (616)
|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++
T Consensus 470 ~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~ 538 (659)
T TIGR00954 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYP 538 (659)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcC
Confidence 99999999999999999999999999999999999999999874 5689999999999999999999997
Q ss_pred CC------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 470 CD------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 470 ~~------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
.. .+.++++++++++.++++++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||++
T Consensus 539 ~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~ 616 (659)
T TIGR00954 539 DSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD 616 (659)
T ss_pred CChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 41 14678899999999999999988 999999987 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 544 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 544 te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
+++.+.+.+++. ++|+|+||||++.++.||+|++|+.
T Consensus 617 ~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 617 VEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999774 8999999999999999999999973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.7e-73 Score=687.86 Aligned_cols=539 Identities=20% Similarity=0.263 Sum_probs=457.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 38 AKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSS 117 (616)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (616)
++.+++.+++..+..++..++.++.|++++.+++.+..... .. ....+.++++++++.++..++.....|...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 148 (1490)
T TIGR01271 75 RRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNA-PE-----REIAYYLALGLCLLFIVRTLLLHPAIFGLHH 148 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-Cc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777778888889999999999999999998742211 10 1112334445555566667777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007152 118 ASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLA 197 (616)
Q Consensus 118 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 197 (616)
++.++...+...+|+|+++++...+++.++|+++|++++|++.+.+.+.. ++.+|..++.+++++++++...++.+++.
T Consensus 149 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~ 227 (1490)
T TIGR01271 149 LGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCG 227 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997765 46677778888888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 198 LVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLF 277 (616)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (616)
++++++++++..++.+++.+.+++.++..+++.+.+.|.++|+++||+++||+.+.+++++..++..+...+........
T Consensus 228 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~ 307 (1490)
T TIGR01271 228 LGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFY 307 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888777766655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 007152 278 FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSV-SGLSSLYTVAMKAAGASRRVFQLLDRVSSMPK 356 (616)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 356 (616)
..+..+... .+.++.+++|.+..+ ++++.+++++.++..+..|+ ..++..+..+.++.++++||.++++.++..+.
T Consensus 308 ~~~~~~~~~--~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~ 384 (1490)
T TIGR01271 308 SSAFFFSGF--FVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTL 384 (1490)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 333332222 234455566666655 68999999999999888887 47999999999999999999999976543211
Q ss_pred CCCCCCCCCCCCcEEEEeEEEECCCCC-------------------------------CCcceeceeEEEeCCCEEEEEC
Q 007152 357 SGNQCPLGDQDGEVELDDVWFAYPSRP-------------------------------NHMVLKGITLKLLSGSKIALVG 405 (616)
Q Consensus 357 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~-------------------------------~~~vL~~isl~I~~G~~vaIvG 405 (616)
.. . .....|+++|++|+|+... .+++|+|+||+|++|++++|+|
T Consensus 385 ~~--~---~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G 459 (1490)
T TIGR01271 385 EY--N---LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAG 459 (1490)
T ss_pred cc--c---CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEEC
Confidence 10 0 1123599999999996310 1368999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHH
Q 007152 406 PSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKM 485 (616)
Q Consensus 406 ~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~ 485 (616)
|||||||||+++|+|+++|++|+|.++| .|+||||+||+|++||+|||+||.+ ++++++.++++.
T Consensus 460 ~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~ 524 (1490)
T TIGR01271 460 STGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS--YDEYRYTSVIKA 524 (1490)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc--cchHHHHHHHHH
Confidence 9999999999999999999999999999 6999999999999999999999954 667788999999
Q ss_pred cCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCeEEEE
Q 007152 486 ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLMKGRTVLVI 564 (616)
Q Consensus 486 a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~-l~~~~~~~T~I~I 564 (616)
|++.++++.+|+|++|.||++|.+|||||||||+||||++++|+++|||||||+||+++++.+.+. +.++.+++|+|+|
T Consensus 525 ~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilv 604 (1490)
T TIGR01271 525 CQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604 (1490)
T ss_pred HhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999975 6777789999999
Q ss_pred ecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHH
Q 007152 565 AHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 606 (616)
Q Consensus 565 tHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~ 606 (616)
||+++.++.||+|++|++|+|++.|+|+|+.+.++.|.+.+.
T Consensus 605 tH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred eCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 999999999999999999999999999999988788877663
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.7e-71 Score=670.66 Aligned_cols=548 Identities=19% Similarity=0.256 Sum_probs=461.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 34 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 113 (616)
Q Consensus 34 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (616)
+..+++.+++.+++.+++.++..++.++.|++++.+++.+..... .+...+.++++++++.++..++.....+
T Consensus 235 ~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-------~~~~g~~l~~~l~~~~~~~~~~~~~~~~ 307 (1560)
T PTZ00243 235 LRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-------TWGRGLGLVLTLFLTQLIQSVCLHRFYY 307 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788888889999999999999999999999998743211 1111223344455566667777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhhc--ccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007152 114 LFSSASERVVARLRKNLFSHLINQEIAFYD--VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSW 191 (616)
Q Consensus 114 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 191 (616)
...+.+.++...+...+|+|+++++...+. +.++|+++|.+++|++.+.+++. .++.++..++.+++++++++.+.+
T Consensus 308 ~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG 386 (1560)
T PTZ00243 308 ISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVG 386 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999999998776 56899999999999999999974 467788888888888999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Q 007152 192 KLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQA 271 (616)
Q Consensus 192 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 271 (616)
+.+++.++++++.+++..++.+++.+.+++..+..+++.+.+.|.++|+++||.++||+.+.+++.+..++..+...+..
T Consensus 387 ~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~ 466 (1560)
T PTZ00243 387 WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQ 466 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888899999999999999999999999999999999999999999999999999999888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 007152 272 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRV 351 (616)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 351 (616)
........+......+..+ +.+++|.+..|.+|++.+++++.++..+..|+..++..+..+.++.++++|+.++++.+
T Consensus 467 ~~~~~~~~~~~~~p~l~~~--~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~ 544 (1560)
T PTZ00243 467 LARVATSFVNNATPTLMIA--VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECD 544 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6666555544444433332 34567888899999999999999999999999999999999999999999999999764
Q ss_pred CCCC----C--C--------C---C--------------CC--C-------------------------CCCCCCcEEEE
Q 007152 352 SSMP----K--S--------G---N--------------QC--P-------------------------LGDQDGEVELD 373 (616)
Q Consensus 352 ~~~~----~--~--------~---~--------------~~--~-------------------------~~~~~~~I~~~ 373 (616)
+... + . . . +. + .....+.+.++
T Consensus 545 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1560)
T PTZ00243 545 NATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVE 624 (1560)
T ss_pred cccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence 3100 0 0 0 0 00 0 00011357788
Q ss_pred eEEEECCCC-------------------------------------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHH
Q 007152 374 DVWFAYPSR-------------------------------------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIAN 416 (616)
Q Consensus 374 ~vsf~Y~~~-------------------------------------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~ 416 (616)
|++|++|.. .++++|+|+||+|++|++++|+||||||||||++
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~ 704 (1560)
T PTZ00243 625 DTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQ 704 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHH
Confidence 888875410 1246899999999999999999999999999999
Q ss_pred HHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCC
Q 007152 417 LIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 496 (616)
Q Consensus 417 lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp 496 (616)
+|+|+++|++|+|.++ ++|+||||+|++|++||+|||.++.+ .+++++.++++.|+++++++.+|
T Consensus 705 ~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~ 769 (1560)
T PTZ00243 705 SLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE--EDAARLADAVRVSQLEADLAQLG 769 (1560)
T ss_pred HHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh--hhHHHHHHHHHHhhhHHHHHHhh
Confidence 9999999999999874 47999999999999999999999864 46778999999999999999999
Q ss_pred CcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHhCCCeEEEEecCchhhhhcC
Q 007152 497 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLMKGRTVLVIAHRLSTVQSAD 575 (616)
Q Consensus 497 ~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~-l~~~~~~~T~I~ItHrl~~l~~aD 575 (616)
+|++|.+|++|.+||||||||++||||++++|+++|||||||+||+++++.+.+. +....+++|+|+|||+++.++.||
T Consensus 770 ~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad 849 (1560)
T PTZ00243 770 GGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRAD 849 (1560)
T ss_pred ccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999988887764 444557899999999999999999
Q ss_pred EEEEEeCCEEEEecChhHHhhcCChhHHHHHH
Q 007152 576 TVAVVSDGEIVESGTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 576 ~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~ 607 (616)
+|++|++|++++.|+|+|+++. +.|.++...
T Consensus 850 ~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 850 YVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred EEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 9999999999999999999874 467777654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.5e-57 Score=460.09 Aligned_cols=236 Identities=22% Similarity=0.417 Sum_probs=223.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+|+|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.++..++..++|+.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 58999999999753 3479999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+||||+|.+|++|++||+.+.. ..++++++++++.+++.+++..+|+|++|.++|+|.+||||||||++||||++++|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997543 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHH
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~ 608 (616)
+|+||||||++||+.+++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|++++|+++++.|++++...
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 99999999999999999999999998878899999999999999999999999999999999999999888888888644
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-54 Score=401.53 Aligned_cols=217 Identities=34% Similarity=0.528 Sum_probs=195.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC-CCCHHHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV-EISHEHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~-~~~~~~~r~~ 447 (616)
-|+++||+.+|.+ ..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|+.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999973 46999999999999999999999999999999999999999999999998773 3378999999
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
+|+|+|+..||+ -|+.||++++-- ...+ ++.-.+.++++|+.|-.+..| .+|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999995 699999999731 0122 334567789999999999888 5799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||||.-+|+++++|||||||||+.-..|++.++++. .|.|.|+|||.+...+. ||||+.||+|+|+|+|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999886 68899999999999876 8999999999999999999998764
Q ss_pred C
Q 007152 599 G 599 (616)
Q Consensus 599 ~ 599 (616)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 3
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-53 Score=441.58 Aligned_cols=226 Identities=30% Similarity=0.470 Sum_probs=199.5
Q ss_pred CCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCC--C
Q 007152 366 QDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLV--E 438 (616)
Q Consensus 366 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~--~ 438 (616)
..+.|+++|++|+|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++. .
T Consensus 77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34579999999999743 3579999999999999999999999999999999999996 57999999999997 4
Q ss_pred CCHHHHhcccEEEccCCCcCCccHHHHHhcCCC-CCCCHHH-----HHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 439 ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKASSAD-----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 439 ~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~~~~~-----i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
.+...+|+.++||||+|++|++|++|||.|+.. ...++++ ++++++.+++ ++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCH
Confidence 556788999999999999999999999998632 1233333 4556666665 44567889999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~ 591 (616)
|||||++||||++++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|||+++++.. ||+|++|++|+|+|.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998888999999999999877 999999999999999999
Q ss_pred hHHhhcCC
Q 007152 592 EELLSKGG 599 (616)
Q Consensus 592 ~eL~~~~~ 599 (616)
+++.....
T Consensus 309 ~~l~~~~~ 316 (329)
T PRK14257 309 KTIFIHPK 316 (329)
T ss_pred HHHhcCCC
Confidence 99986533
No 50
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.7e-49 Score=425.70 Aligned_cols=501 Identities=19% Similarity=0.239 Sum_probs=399.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 54 IASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSH 133 (616)
Q Consensus 54 ~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 133 (616)
+++.+.+......+.+.|.+... ....++..+.++.++..+...+..++.|+...+..+....+...+.++
T Consensus 58 ~~v~~~v~~~~w~~~~~~aL~~~---------d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~ 128 (604)
T COG4178 58 LSVRGQVLLNDWNGPFYNALARR---------DLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDR 128 (604)
T ss_pred HHhheeeeeHhhhhHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555556666665432 123344444455555555566667788999999999999999999999
Q ss_pred HHcCCchhhcccCch------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------
Q 007152 134 LINQEIAFYDVTRTG------ELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK--------------- 192 (616)
Q Consensus 134 l~~~~~~~~~~~~~G------~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~--------------- 192 (616)
.++....++ -...| ..=+|+..|+..+.+........++.++++++.+.++++..+..
T Consensus 129 wl~~~~~y~-l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~ 207 (604)
T COG4178 129 WLDPRRYYR-LAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGY 207 (604)
T ss_pred HhcCCchHH-HHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchH
Confidence 998884443 33333 33489999999999998888888888888888888888844432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 193 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 272 (616)
Q Consensus 193 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 272 (616)
+..++++.+++..++..+++|+..+.+.+..+..+.+...+...-++.+.|-.|+.|+.+.++..+......+...+...
T Consensus 208 mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~ 287 (604)
T COG4178 208 MVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVR 287 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333334444455566788999999999999999999999999999999999999999999888888877776666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007152 273 VVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS 352 (616)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 352 (616)
....+..+....+.+..++-+.+++.....|+++.|.++.....+..+...+..+.+.+..++.-++...|+.++.+...
T Consensus 288 ~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~ 367 (604)
T COG4178 288 AQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367 (604)
T ss_pred HHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555555555566677778889999999999999999999999999999999999999999999998874322
Q ss_pred ------CCCCCCCCC-C-CCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 353 ------SMPKSGNQC-P-LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 353 ------~~~~~~~~~-~-~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+.+...... . ....+..|+++|++..-|++ .+.+++.||++++|+.+-|.|+||||||||++.|+|++|-
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred hccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 111110000 0 00014679999999999864 3789999999999999999999999999999999999999
Q ss_pred CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccc
Q 007152 425 IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFV 503 (616)
Q Consensus 425 ~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~v 503 (616)
.+|+|.+-. -..+-|+||.|++-.||+||-|+|-++. +.+|+++.+++.+|+|.++++++.+-.+
T Consensus 446 g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~--- 511 (604)
T COG4178 446 GSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR--- 511 (604)
T ss_pred CCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---
Confidence 999987641 1258999999999999999999998764 3899999999999999999999764322
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 504 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 504 ge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
-..-||+||+||||+||.++++|++++|||+|||||+++|..+.+.+++.+++.|+|.|+||.......++.+.+++
T Consensus 512 --W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 512 --WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred --HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 56789999999999999999999999999999999999999999999998899999999999999988888777643
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.1e-52 Score=419.16 Aligned_cols=236 Identities=49% Similarity=0.779 Sum_probs=220.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++. ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999743 346999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|+||++++|+.|++||+.++.+ ..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++.+|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999998754 355677888889999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHH
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~ 607 (616)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.++++++.+.|+.++++
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 236 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQL 236 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHhc
Confidence 999999999999999999999999887789999999999999999999999999999999999999999999887753
No 52
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-53 Score=410.86 Aligned_cols=218 Identities=34% Similarity=0.551 Sum_probs=194.5
Q ss_pred EEEEeEEEECCCC--CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHH
Q 007152 370 VELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHL 444 (616)
Q Consensus 370 I~~~~vsf~Y~~~--~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~ 444 (616)
|++++||+.|+.. ...++|+||||+|++|+++||+|+||||||||++++.++-.|++|+|.+||.|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 12468999999999999999999999999999999999999999999999998887775 556
Q ss_pred hcccEEEccCCCcCC-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 445 HRKISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
|++||+++|++.|++ -|+.+|+.|.-. ... -++++.+.|+.+||.|..++-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 789999999999998 799999998532 012 2456788899999999888877 78999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+|||||..+|+||+.|||||||||+|.+.|++.|++.- -|-|+++|||.++.++. |||+.||++|+++|+|+..|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999987653 48899999999999976 9999999999999999999998
Q ss_pred hcC
Q 007152 596 SKG 598 (616)
Q Consensus 596 ~~~ 598 (616)
.+.
T Consensus 231 ~~P 233 (339)
T COG1135 231 ANP 233 (339)
T ss_pred cCc
Confidence 754
No 53
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-49 Score=392.23 Aligned_cols=521 Identities=20% Similarity=0.236 Sum_probs=384.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 34 VLALAKPDAGKLIIATVALLIASVSSILIPKFG-GKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 112 (616)
Q Consensus 34 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~-~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (616)
++-+.+++++.++....+++.+++..+..-.++ ..++.. .++. . ....+.++++++++ +.+.+.+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e~----~~~~------~-~~l~~f~~llllf~---~ss~is~ 69 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIET----ADTS------L-LVLPEFLGLLLLFM---VSSLISQ 69 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccc------e-eeHHHHHHHHHHHH---HHHHHHH
Confidence 445677888888888777777766655433222 222221 1110 0 11122222332222 3344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007152 113 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 192 (616)
Q Consensus 113 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 192 (616)
.....+++.+..++|.++.+|++..|+..+++-+++.++.++++|+..+. +-...++.+.++.+..+.+.+.+.++||+
T Consensus 70 lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~ 148 (546)
T COG4615 70 LGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPK 148 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66667889999999999999999999999999999999999999999997 66677888889888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHH
Q 007152 193 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEK--NEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 193 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~ 270 (616)
+.+++++.+.+.++...+...+..+.....++..+++.+.....++|.++++.+..-. .+.+++....+...+...+.
T Consensus 149 mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~ 228 (546)
T COG4615 149 MFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRA 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhh
Confidence 9999999888888888888888888888888999999999999999999999876433 23333333333322211111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTI-TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 349 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~ 349 (616)
+ .+.........+....++....|+.. -+.-+.-...+++.....+..|+.++.+.+..+.++.++++++.++-.
T Consensus 229 n----~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~ 304 (546)
T COG4615 229 N----TFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLEL 304 (546)
T ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 1 11101111111111111111112221 233344455556777778889999999999999999999999988755
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 350 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
.|... +-..+.+.|+ -..||++||.|+|++. ..-+.-||++|++||.|-|+|.|||||||++++|.|+|.|++|+|
T Consensus 305 ~~~~a-~~~~~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 305 APYKA-DFPRPQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred CCccc-cCCCCCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 33211 1111112222 3579999999999853 366889999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
++||.+++.=+++++|+-++-|+-|-|||+.++ |.+..++++.+.+-++...+.... ++.+|--+ -..
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~k 448 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLK 448 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----ccc
Confidence 999999999999999999999999999999754 322236777777766665554332 23333222 257
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
||-|||.|+|+-=|++.+-||++|||=-+-=||.=.+.+.+.+.-.. .|||++.|||+-....+|||++.|++|+++|
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 99999999999999999999999999999999999999998875433 5999999999999999999999999999998
Q ss_pred ec
Q 007152 588 SG 589 (616)
Q Consensus 588 ~G 589 (616)
.-
T Consensus 529 ~t 530 (546)
T COG4615 529 LT 530 (546)
T ss_pred cc
Confidence 64
No 54
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-51 Score=414.63 Aligned_cols=241 Identities=33% Similarity=0.562 Sum_probs=222.6
Q ss_pred CCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH
Q 007152 365 DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 365 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~ 444 (616)
...+.|+++|++++|++. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|++||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 345689999999999753 3469999999999999999999999999999999999999999999999999999998899
Q ss_pred hcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 445 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
|+.++|++|++.+|++|++||+.+.. ...+++++++++.+++.++++.+|.|++|.+++.+.+|||||+||++||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral 171 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAF 171 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998653 2356678899999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc-CChhHH
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTA 603 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~-~~~y~~ 603 (616)
+++|+++||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++++. ++.|++
T Consensus 172 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~ 251 (257)
T cd03288 172 VRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251 (257)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHH
Confidence 9999999999999999999999999999987778999999999999999999999999999999999999875 567888
Q ss_pred HHHHH
Q 007152 604 LVKRQ 608 (616)
Q Consensus 604 l~~~~ 608 (616)
++..+
T Consensus 252 ~~~~~ 256 (257)
T cd03288 252 LVRTD 256 (257)
T ss_pred HHhcc
Confidence 87654
No 55
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-52 Score=391.89 Aligned_cols=214 Identities=33% Similarity=0.570 Sum_probs=195.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+|+|||++|.+ ..+++|+||+|++||+++++|||||||||++|.+.|+++|++|+|++||.++++++...+|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC------CCCHHHHHHHHHHcCch--HHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG------KASSADIENAAKMANAH--DFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~------~~~~~~i~~al~~a~l~--~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
||-|..-||+ -||.|||++- |. +.-++++.+.++.++|+ +|.++.| ..|||||+||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999995 7999999985 31 12345678889999996 4888888 5799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||..+|+|+++|||+|||||.+...+++-+.++. -++|+|+|||+.+. ++-+|||.+|++|+|++.|+++|++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999987654 38999999999975 788999999999999999999999986
Q ss_pred C
Q 007152 598 G 598 (616)
Q Consensus 598 ~ 598 (616)
.
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
No 56
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-51 Score=406.56 Aligned_cols=235 Identities=53% Similarity=0.830 Sum_probs=219.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999642 36999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|++|++.+|++|++||+.++.+ ..+++++.++++.+++.+.+..+|.|+++.+......||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865 456777888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHH
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~ 607 (616)
++||||||++||+++.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|+.++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 999999999999999999999999887788999999999999999999999999999999999999888888777654
No 57
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-51 Score=406.46 Aligned_cols=233 Identities=57% Similarity=0.900 Sum_probs=217.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999753 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|++|++.+|+.|++||+.++.+ ..+.+++.+.++..++.++++.+|.|+++.++.....||||||||++|||||+++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865 456677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHH
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 604 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l 604 (616)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+..+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999999887889999999999999999999999999999999999998888777654
No 58
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-52 Score=382.00 Aligned_cols=220 Identities=34% Similarity=0.543 Sum_probs=198.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-----CEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK-----GKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~-----G~I~idg~~i~~--~~~ 441 (616)
.++++|+++.|.+ +.+|+|||++|++++.+|++||||||||||++++-|+.+... |+|.++|.|+.+ ++.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999973 469999999999999999999999999999999999999876 999999999975 579
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-C----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-G----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
-.+|++||+|+|.|.-|+.||+||+.||.. . ..-|+.++++++.|.|-|.+.. .+.+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHH
Confidence 999999999999999999999999999932 0 1124558999999999887653 244668889999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|||||||+.-+|+||+||||||||||.+..+|.+-|.+++++-|+|+|||.+.- .+-+|+..++..|+++|.|+-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999986 5679999999999999999999987
Q ss_pred hcC
Q 007152 596 SKG 598 (616)
Q Consensus 596 ~~~ 598 (616)
.+.
T Consensus 237 ~~P 239 (253)
T COG1117 237 TNP 239 (253)
T ss_pred cCc
Confidence 654
No 59
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-50 Score=402.49 Aligned_cols=227 Identities=48% Similarity=0.825 Sum_probs=212.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ .+++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999973 23699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+|+||++.+|++|++||+.++.+ ...++++.++++..++.++++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999865 45667888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+.+++.++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 9999999999999999999999999887789999999999999999999999999999999998887654
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.8e-50 Score=403.39 Aligned_cols=236 Identities=59% Similarity=0.950 Sum_probs=216.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++..+.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997532347999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|++|++.+|+.|++||+.++.+ ....+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999765 345667888888899999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHH
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 606 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~ 606 (616)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+....++..+.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 236 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVK 236 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHhh
Confidence 99999999999999999999999887778999999999999999999999999999999999999887766666553
No 61
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2e-50 Score=398.52 Aligned_cols=219 Identities=35% Similarity=0.565 Sum_probs=207.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++. ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 58999999999753 34799999999999999999999999999999999999999999999999999988988999999
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+|+||++.+|++|++||+.+..+ .+++++.++++..++.+++..+|.|+++.+++...+||||||||++||||++++|
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987643 5678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877899999999999999999999999999998876
No 62
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.5e-49 Score=391.98 Aligned_cols=219 Identities=37% Similarity=0.662 Sum_probs=203.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++. ..++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999743 24699999999999999999999999999999999999999999999999999888887888899
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+|++|++.+|..|++||+.++.+ ..+++++.++++..++.+.++.+|.|++|.+.+....||||||||++||||++.+|
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998754 34566788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999887668999999999999999999999999998764
No 63
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.2e-49 Score=413.31 Aligned_cols=226 Identities=31% Similarity=0.521 Sum_probs=195.6
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~r 445 (616)
|+++||+++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 246999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
+.|+|+||++.+|. .|++||+.++.. ...+ ++++.++++.+++.++.+..| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999998531 0122 345778888888887766554 579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.++ .||+|++|++|+|++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998753 789999999999985 599999999999999999999986
Q ss_pred c--CChhHHHHH
Q 007152 597 K--GGVYTALVK 606 (616)
Q Consensus 597 ~--~~~y~~l~~ 606 (616)
. +..++.++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 4 233455554
No 64
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5.4e-50 Score=391.33 Aligned_cols=215 Identities=33% Similarity=0.526 Sum_probs=194.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++|+|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|.+|+|++||+++.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-cCCccHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 449 SIVSQEPV-LFNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 449 ~~v~Q~~~-lf~~TIreNi~~g~~~---------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+||||++. -|.-|++|=+.+|+-+ +.+++.+.+|++.+++.++.++. -..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 99999965 5788999999999631 12333588899999999886542 246999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
.|||||..+|+|++||||||+||....-.+++.++++. +++|+|+|.|+++. ++.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999876 37999999999975 7899999999999999999999887
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 54
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-49 Score=407.06 Aligned_cols=223 Identities=27% Similarity=0.456 Sum_probs=186.5
Q ss_pred CcEEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC------
Q 007152 368 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI------ 439 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~------ 439 (616)
..|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcccEEEccCC--CcCCccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCccc-ccccC
Q 007152 440 ----------SHEHLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQ-TFVGE 505 (616)
Q Consensus 440 ----------~~~~~r~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~Gld-T~vge 505 (616)
....+|+.++||+|+| ++|+.|++|||.++.. ...++++..+.+ .++++.+ |++ ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcC
Confidence 3567899999999998 7999999999998731 123333322211 1233332 332 34566
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCC
Q 007152 506 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDG 583 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G 583 (616)
.+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999999999998764 588999999999976 679999999999
Q ss_pred EEEEecChhHHhhc
Q 007152 584 EIVESGTHEELLSK 597 (616)
Q Consensus 584 ~Ive~G~~~eL~~~ 597 (616)
+|++.|+++++.+.
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999987543
No 66
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4e-49 Score=377.82 Aligned_cols=207 Identities=35% Similarity=0.532 Sum_probs=179.3
Q ss_pred EEEEeEEEECCCC-CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHH-
Q 007152 370 VELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHL- 444 (616)
Q Consensus 370 I~~~~vsf~Y~~~-~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~- 444 (616)
++++||+..|... ...++|+++||+|++||++||+||||||||||+++|.|+..|++|.|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999999643 12468999999999999999999999999999999999999999999999999999985 334
Q ss_pred hcccEEEccCCCcCC-ccHHHHHhc----CCCCC-CCHHHHHHHHHHcCchHHHH-cCCCcccccccCCCCCCChhHHHH
Q 007152 445 HRKISIVSQEPVLFN-CSIEENIAY----GCDGK-ASSADIENAAKMANAHDFIS-NFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~-~TIreNi~~----g~~~~-~~~~~i~~al~~a~l~~~i~-~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
|++||||+|+..|++ -|++|||.+ ..... ..++...+.++..|+.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 467999999999986 599999995 22111 12455777788888876655 545 6799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
+||||||+.+|++++.||||+|||.+|.+.|++.++++. .++|+|+|||+......|||++.|++|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999998874 3789999999999999999999999999544
No 67
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-49 Score=394.11 Aligned_cols=219 Identities=35% Similarity=0.555 Sum_probs=189.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~r~ 446 (616)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 369999999999999999999999999999999999999999999999999987764 57889
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCCCC--CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~~~--~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
.++||||++.+|++ |++||+.++... ..+ ++++.++++..++.++.++.| ..||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHH
Confidence 99999999999986 999999886210 122 234666777777765544333 579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 789999999999875 599999999999999999999887
Q ss_pred cCChhH
Q 007152 597 KGGVYT 602 (616)
Q Consensus 597 ~~~~y~ 602 (616)
....|.
T Consensus 227 ~~~~~~ 232 (235)
T cd03261 227 SDDPLV 232 (235)
T ss_pred CCChhh
Confidence 655453
No 68
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.5e-49 Score=353.54 Aligned_cols=212 Identities=37% Similarity=0.553 Sum_probs=189.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|.+++|.|+|... | -..+++|++||++||+||||||||||+++++||..|.+|+|.|||+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~---~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL---P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcc---e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 5688999999632 2 3689999999999999999999999999999999999999999999998777654 5699
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+++||..||. -||++||.+|..+. .+.+++..++..+|+.++..+|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 9999999995 79999999996422 24567999999999999999999 4799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcCC
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGG 599 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~~ 599 (616)
|+|+-||++||||+|||||.-.+.+..-+.+++ ++.|+++|||.++.+ +.+|+++++++|||+++|+.+++....+
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999888887765 478999999999976 5599999999999999999999987654
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.4e-49 Score=397.42 Aligned_cols=214 Identities=36% Similarity=0.583 Sum_probs=195.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+.+|++. .+++|+||+|++||+++++||||||||||+++|+|+.+|++|+|+|||.++.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999743 2899999999999999999999999999999999999999999999999999999886 689
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
++|+|+.-||+- ||+|||.|+-.. +..++++.++++..++++.+++.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999975 999999998531 123677999999999999999988 679999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|+.++|++++||||+|+||++....+...|+++.+ +.|+|.|||+... .-.+|||.||++|+|.+.|++.|+.++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999999887653 6799999999975 4669999999999999999999998754
No 70
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1e-48 Score=387.85 Aligned_cols=213 Identities=36% Similarity=0.563 Sum_probs=187.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----CCCCCEEEECCEeCCCCC--HH
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILLNGVPLVEIS--HE 442 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~-----~~~~G~I~idg~~i~~~~--~~ 442 (616)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++..++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~-----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.+|+.++|+||++.+|+.|++||+.++... .. .++++.++++..++.+.....++ ..+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788899999999999988999999885320 11 23457788888888776555432 4689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++|+
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999998865589999999999865 5999999999999999998764
No 71
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.8e-48 Score=385.91 Aligned_cols=218 Identities=55% Similarity=0.846 Sum_probs=199.7
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
.+.|+++|++++|+++...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 45799999999997532246999999999999999999999999999999999999999999999999998888888889
Q ss_pred ccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 447 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
.++|++|++.+|+.|++||+.++.. ..+.+++.+..+..++.++++.+|.|+++.+.+...+||||||||++||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998754 344555666667788899999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999999999999999974
No 72
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=370.40 Aligned_cols=224 Identities=35% Similarity=0.531 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhc
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~-~~~~r~ 446 (616)
.++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||+++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997541 114999999999999999999999999999999999999999999999998776543 457788
Q ss_pred ccEEEccCCCc-CC--ccHHHHHhcCCC---CCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEPVL-FN--CSIEENIAYGCD---GKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~~l-f~--~TIreNi~~g~~---~~~~~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
.+-+|+|||+- +| -||++-|.=.-. .+-.+.+++++++.+|+.+ |..+.| ..||||||||+|
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999983 33 377666643211 0123566999999999965 667777 469999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC--eEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~--T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||.-+|++||||||||+||....+.|++-+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998887544 99999999999977 99999999999999999999987
Q ss_pred c-CChhHH
Q 007152 597 K-GGVYTA 603 (616)
Q Consensus 597 ~-~~~y~~ 603 (616)
. .-.|.+
T Consensus 232 ~~~h~ytr 239 (252)
T COG1124 232 HPSHPYTR 239 (252)
T ss_pred CCccHHHH
Confidence 6 344544
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-48 Score=395.76 Aligned_cols=218 Identities=32% Similarity=0.558 Sum_probs=194.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--cCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~~--lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+||+|+|. ++..|++|||.++... ..+ ++++.++++..++.++.+..| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 5678999999987320 122 345788899999987776655 57999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999989999999999999999999888754
No 74
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-49 Score=383.15 Aligned_cols=217 Identities=35% Similarity=0.649 Sum_probs=197.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC-CCCHHHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV-EISHEHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~-~~~~~~~r~~ 447 (616)
.|+++|++|+|+++ .++|+|+||+|++|+.++|+|+||||||||+++|.|+++|++|.|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 57999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred cEEEccCC--CcCCccHHHHHhcCCCC-CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEP--VLFNCSIEENIAYGCDG-KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~--~lf~~TIreNi~~g~~~-~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
+|||+|+| ++|..||.|.+.||... ..+. +++.++++.+++.++.+.-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 79999999999999541 1233 45788999999998866666 6799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|.+|..+|+++|||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. ||++++|++|+++.+|+++|+.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999998866 999999999999999999888765
Q ss_pred C
Q 007152 598 G 598 (616)
Q Consensus 598 ~ 598 (616)
.
T Consensus 230 ~ 230 (235)
T COG1122 230 A 230 (235)
T ss_pred h
Confidence 3
No 75
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-48 Score=366.73 Aligned_cols=225 Identities=32% Similarity=0.551 Sum_probs=196.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HH
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HL 444 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~---~~ 444 (616)
..|++++|+++|.+ +.|++|+||+|++||.++|+|+||||||||++++.|+++|++|+|+++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999964 4799999999999999999999999999999999999999999999999999999975 45
Q ss_pred hcccEEEccCCCcCCc-cHHHHHhcCCC--CCCCHHHHH----HHHHHcCchHH-HHcCCCcccccccCCCCCCChhHHH
Q 007152 445 HRKISIVSQEPVLFNC-SIEENIAYGCD--GKASSADIE----NAAKMANAHDF-ISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~-TIreNi~~g~~--~~~~~~~i~----~al~~a~l~~~-i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
|+++|+++|..-||+. ||+||+.|--. .+.+++.++ .-++.+||... .+..| +.||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8999999999999976 99999999321 123444444 45788888877 66666 679999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
|.|||||+.-||+|+++|||||+|||.+...+.+-|+++.. +.|+|+|||+++++. .||+|+++.+|+|+.+||.+|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999888877653 789999999999875 589999999999999999999
Q ss_pred HhhcCCh-hHHHHH
Q 007152 594 LLSKGGV-YTALVK 606 (616)
Q Consensus 594 L~~~~~~-y~~l~~ 606 (616)
+.+.+.. .+++++
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 9987554 445544
No 76
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-48 Score=373.52 Aligned_cols=199 Identities=36% Similarity=0.543 Sum_probs=178.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.+++++|+++|+. ..+|+|+||+|++||+++|+||||||||||+++++|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999974 4799999999999999999999999999999999999999999999999887443 3469
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.||+ -|++||+.++-... -.+++..++++.+||.+|-+..| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 79999999986411 12456899999999999999988 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEeC--CEEE
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSD--GEIV 586 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~~--G~Iv 586 (616)
||+.+|++|+||||++|||+.|...+++-+.++. .++|+++|||+.+. +--+|||++|.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999998876 46999999999986 567999999999 5553
No 77
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-48 Score=375.58 Aligned_cols=211 Identities=34% Similarity=0.550 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++|+|.+. ++|+||||+|++|++++|+||||||||||+|+++|+++|++|+|.++|.+.++... +..|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999742 59999999999999999999999999999999999999999999999988766544 5689
Q ss_pred EEEccCC---CcCCccHHHHHhcCCCCC---------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 449 SIVSQEP---VLFNCSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 449 ~~v~Q~~---~lf~~TIreNi~~g~~~~---------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
|||||.. +-|+-||+|=+.+|.... .+.+++.+|++.+|+.++.+ -++|| |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Ccccc----cCcHHHH
Confidence 9999955 569999999999985421 13478999999999998854 34555 9999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|+.|||||..+|++|+|||||+++|+.++..+.+-|.++.+ |+|+++|||+++.+ +++|+|+.| |++++..|+.+|.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999998874 89999999999987 459999999 5678899999988
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 753
No 78
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-48 Score=387.04 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHHh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~---~~~G~I~idg~~i~~~~~~~~r 445 (616)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999974 369999999999999999999999999999999999984 6899999999999988888889
Q ss_pred cccEEEccCCCcCCccHHHHHhcCCC-------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 RKISIVSQEPVLFNCSIEENIAYGCD-------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~TIreNi~~g~~-------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+.++|+||++.+|+.|++||+.++.. ....++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999987621 011234577888888887655432 3456788999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999774 6999999999999999999999764
No 79
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-48 Score=402.33 Aligned_cols=217 Identities=33% Similarity=0.550 Sum_probs=188.5
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~r 445 (616)
|+++||+|+|+... +.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 347999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
++|+||||++.+|. .|++||+.++.. ...+ ++++.++++..++.++.++. ..+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 89999999999986 699999998631 0122 23466777777776655443 3579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999998764 99999999999999999999986
Q ss_pred c
Q 007152 597 K 597 (616)
Q Consensus 597 ~ 597 (616)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 80
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.3e-47 Score=385.15 Aligned_cols=241 Identities=28% Similarity=0.434 Sum_probs=208.7
Q ss_pred HHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 342 RRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 342 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+.+.+++..++++... .+.+.....|+++|+++.. +++|+|+||+|++|++++|+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENND---RKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccc---cccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566677665543221 1223344579999999952 3599999999999999999999999999999999999
Q ss_pred CCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccc
Q 007152 422 YDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT 501 (616)
Q Consensus 422 ~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT 501 (616)
++|++|+|.++| .++|++|++++|++|++||+.++.. ..+.++.++++.+++.+.+..+|.+++|
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS--YDEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc--cCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 999999999998 4999999999999999999998643 3455677888888999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCeEEEEecCchhhhhcCEEEEE
Q 007152 502 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 502 ~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l-~~~~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
.+++.+..||||||||++||||++++|+++||||||++||+.+...+.+.+ +.+.+++|+|+|||+++.++.||+|++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999998764 5555689999999999999999999999
Q ss_pred eCCEEEEecChhHHhhcCChhHHHH
Q 007152 581 SDGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 581 ~~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
++|++++.|+++++.+....|.+.+
T Consensus 232 ~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 232 HEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred ECCEEEEECCHHHHHhcchHHHHHH
Confidence 9999999999999987666666544
No 81
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-47 Score=372.97 Aligned_cols=203 Identities=36% Similarity=0.590 Sum_probs=183.9
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.++++|++++|++. ..++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999753 2469999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
++|+||++.+|++|++||+.+.++ .+++++.++++ +.+....|||||+||++||||++.+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~--~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE--YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC--CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 999999999999999999987642 45555555544 2456788999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~ 591 (616)
|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999988778999999999999988999999999999988863
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=381.59 Aligned_cols=223 Identities=35% Similarity=0.557 Sum_probs=193.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCCcCCccHHHHHhcCCCC-CCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~-~~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+|+||++.+|+.|++||+.++... ...++++.++++..++. +... .....||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999986321 12245667777777774 2322 3456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcCC-hhH
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGG-VYT 602 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~~-~y~ 602 (616)
+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|+.+++..... .|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 999999999999999999999999998875 3799999999999876 599999999999999999999986432 354
Q ss_pred HHH
Q 007152 603 ALV 605 (616)
Q Consensus 603 ~l~ 605 (616)
..+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 433
No 83
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-47 Score=378.42 Aligned_cols=212 Identities=24% Similarity=0.426 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++. .+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999742 24799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEccCCCcC-CccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|++|++.+| +.|++||+.+... ...+ ++++.++++..++.+..+. . ..+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-------R----ARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-------h----hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999987421 0111 2446677777776554432 2 35799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999998877799999999999885 5999999999999999998875
No 84
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-47 Score=390.11 Aligned_cols=217 Identities=35% Similarity=0.603 Sum_probs=194.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++||+++|++. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999743 34699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEccCC--CcCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~--~lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|+||++ .+++.|++|||.++... ..+ ++++.++++..++.++++..| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46778999999986310 112 345788889999988877766 47999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999989999999999999999999988764
No 85
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.4e-48 Score=379.23 Aligned_cols=204 Identities=31% Similarity=0.507 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~---~~r~ 446 (616)
|+++|++++|++. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999643 24699999999999999999999999999999999999999999999999999876643 4788
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
.++|+||++.+|. .|++||+.++.. ....++++.++++..++.++.+..| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 599999987521 0113456888899998877766555 4799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 585 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~I 585 (616)
||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 4789999999999886 5999999999985
No 86
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-47 Score=382.14 Aligned_cols=214 Identities=28% Similarity=0.486 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~i 448 (616)
++++|++++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 369999999999999999999999999999999999999999999999999998887665 5679
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCCC-C----------C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDGK-A----------S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~~-~----------~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
+|+||++.+|.+ |++||+.++.... . . .+++.++++..++ +.........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999986 9999998864211 0 0 1223444444443 3334455678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~ 590 (616)
|||||++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999998875 68899999999999855 99999999999999999
Q ss_pred hhHHhhc
Q 007152 591 HEELLSK 597 (616)
Q Consensus 591 ~~eL~~~ 597 (616)
++++.+.
T Consensus 227 ~~~~~~~ 233 (236)
T cd03219 227 PDEVRNN 233 (236)
T ss_pred HHHhccC
Confidence 9998653
No 87
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-47 Score=382.91 Aligned_cols=214 Identities=34% Similarity=0.531 Sum_probs=185.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHHHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEHLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~---~~~~r~ 446 (616)
++++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999974 146999999999999999999999999999999999999999999999999998876 466788
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
.++|+||++.+|. .|++||+.++... ...++++.++++..++.+.. ......|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence 9999999999887 6999999875320 11233456666666665433 334578999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
|||||++||||++++|+++|||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3799999999999987 69999999999999999
Q ss_pred ChhHHhh
Q 007152 590 THEELLS 596 (616)
Q Consensus 590 ~~~eL~~ 596 (616)
+++++.+
T Consensus 228 ~~~~~~~ 234 (241)
T cd03256 228 PPAELTD 234 (241)
T ss_pred CHHHhhH
Confidence 9998743
No 88
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-47 Score=388.71 Aligned_cols=214 Identities=32% Similarity=0.548 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++++.+
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999732 3699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCC--CcCCccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~--~lf~~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|+||+| .+|..|++||+.++.. ...+ ++++.++++.+++.++.++.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6888999999998631 0122 345788889999987776666 37999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|||+.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998875 478999999999987 569999999999999999987653
No 89
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-47 Score=390.48 Aligned_cols=218 Identities=28% Similarity=0.522 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--HHHHh
Q 007152 370 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--HEHLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~--~~~~r 445 (616)
|+++||+|+|++.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEccCC--CcCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 RKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 ~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
++|+||||+| .+|+.|++|||.++.. ...+. +++.++++.+++.+ .+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999998631 01233 34667777777750 1123344578999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 78999999999987 569999999999999999999986
Q ss_pred h
Q 007152 596 S 596 (616)
Q Consensus 596 ~ 596 (616)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 90
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=5.2e-48 Score=350.25 Aligned_cols=209 Identities=32% Similarity=0.506 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~r~ 446 (616)
|+|+||+.+|+++ +++|+||||+|++||++-++||||||||||+|+|++...|+.|+|.++|.|+..+.. .-+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999975 479999999999999999999999999999999999999999999999999988875 55799
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~-----~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
+||+|+||..|.. -|++||++|.- ++..-.+++.++++.+||.+-...|| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 9999999999765 69999999853 21223567889999999999999999 5799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhc-CEEEEEeCCEEEEecCh
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA-DTVAVVSDGEIVESGTH 591 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~a-D~Iivl~~G~Ive~G~~ 591 (616)
|||+..+|++||-||||-+|||++...|++-+.++- .|.|+++.||+.+.+..+ -+++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999988764 589999999999999775 68899999999875443
No 91
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-47 Score=390.41 Aligned_cols=216 Identities=28% Similarity=0.499 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCCC--CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC----CCHHH
Q 007152 370 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----ISHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~----~~~~~ 443 (616)
|+++||+|+|+.... +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974311 359999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcccEEEccCC--CcCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhHH
Q 007152 444 LHRKISIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 444 ~r~~i~~v~Q~~--~lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
+|+.++||+|+| .+|+.|+.||+.|+... ..+ ++++.++++..++. ++.. .....||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 79999999999987320 122 23466677777764 3332 33468999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 593 (616)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++|
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998875 478999999999987 5699999999999999999999
Q ss_pred Hhh
Q 007152 594 LLS 596 (616)
Q Consensus 594 L~~ 596 (616)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 865
No 92
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-47 Score=398.46 Aligned_cols=215 Identities=33% Similarity=0.491 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999952 24699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.+|. .|++|||.|+... ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 6999999987420 122 345788899999988887776 479999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ +.||+|++|++|+|++.|+.+|++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999988754 78999999999865 679999999999999999999998753
No 93
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-47 Score=384.57 Aligned_cols=219 Identities=32% Similarity=0.502 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~~~ 441 (616)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|+++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999964 3699999999999999999999999999999999999997 48999999999853 345
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-C-C----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-K-A----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~-~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++|||.++... . . .++++.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 6788999999999999999999999986310 0 1 134567777777765433 334444 4578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987789999999999987 55999999999999999999999
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 754
No 94
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-47 Score=384.14 Aligned_cols=219 Identities=32% Similarity=0.538 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~~ 441 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 369999999999999999999999999999999999975 689999999999865 345
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++||+.++.. .. ..++++.++++.+++.+++.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999987521 01 123467778888887654432 23455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ +.||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887789999999999987 56999999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 754
No 95
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-47 Score=381.21 Aligned_cols=212 Identities=32% Similarity=0.511 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 369999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC-CC----C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG-KA----S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~-~~----~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
|+||+|.+|. .|++||+.++... .. + ++++.++++..++.++.... ..+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 9999999986 6999999986320 01 1 23456677777776554443 3579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 78999999999976 4599999999999999999999876
Q ss_pred c
Q 007152 597 K 597 (616)
Q Consensus 597 ~ 597 (616)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 96
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.2e-47 Score=381.92 Aligned_cols=218 Identities=34% Similarity=0.551 Sum_probs=188.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CCEEEECCEeCCCC--CHH
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVEI--SHE 442 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-----~G~I~idg~~i~~~--~~~ 442 (616)
|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 35999999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCC-CC-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~-~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.+|+.++|+||++.+|+.|++||+.++.. .. .+ ++++.++++..++.+++. .........|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77889999999999999999999987521 01 11 345677888888864432 1123445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999875 59999999999999999999987
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
+.
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 54
No 97
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-47 Score=397.47 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 368999999999999999999999999999999999999999999999999987664 36789
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.+|+ .|++|||.|+... ..+ ++++.++++..++.++.++.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999987320 112 456788899999887766555 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988754 78999999999976 669999999999999999999998753
No 98
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2.8e-47 Score=381.61 Aligned_cols=213 Identities=34% Similarity=0.523 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~r~ 446 (616)
|+++||+++|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2369999999999999999999999999999999999999999999999999987764 34688
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
.++|+||++.+|. .|++||+.++... ...++++.++++..++.++.+ .....|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 9999999999886 6999999875310 011334666677776655443 34568999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEec
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESG 589 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G 589 (616)
|||||++|||||+++|+++|||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998874 378999999999987 569999999999999999
Q ss_pred ChhHHh
Q 007152 590 THEELL 595 (616)
Q Consensus 590 ~~~eL~ 595 (616)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
No 99
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-47 Score=386.39 Aligned_cols=219 Identities=31% Similarity=0.547 Sum_probs=193.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CcCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|++|+| .+++.|+.|||.++.. ...++ +++.++++.+++.++.... ...|||||+||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4778899999987521 01233 3457788888887765543 367999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++|+++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999988764 78999999999999899999999999999999999987643
No 100
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-47 Score=388.67 Aligned_cols=217 Identities=27% Similarity=0.498 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHH
Q 007152 370 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~----~~~~ 443 (616)
|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 13699999999999999999999999999999999999999999999999999654 3467
Q ss_pred HhcccEEEccCC--CcCCccHHHHHhcCCCC-CCCHHH----HHHHHHHcCchHHHHcCCCcccc-cccCCCCCCChhHH
Q 007152 444 LHRKISIVSQEP--VLFNCSIEENIAYGCDG-KASSAD----IENAAKMANAHDFISNFPEKYQT-FVGERGVRLSGGQK 515 (616)
Q Consensus 444 ~r~~i~~v~Q~~--~lf~~TIreNi~~g~~~-~~~~~~----i~~al~~a~l~~~i~~Lp~GldT-~vge~G~~LSGGQr 515 (616)
+|+.|+||||+| .+|+.|++|||.++... ..+.++ +.++++.+++ ++ .......+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF-----------SRDVMSQSPFQMSGGQM 151 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCCcccCCHHHH
Confidence 899999999997 68889999999986321 123333 3444444444 32 22345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
||++|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999874 479999999999987 579999999999999999999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 101
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-47 Score=377.33 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=181.8
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~ 444 (616)
-++++||+|+|+++. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997431 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccCCCcCCc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 445 H-RKISIVSQEPVLFNC-SIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 r-~~i~~v~Q~~~lf~~-TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
| +.++|+||++.+|+. |++||+.++.. ....++++.++++..++.+.... ...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence 3 679999999999875 99999987421 01123456777777776555433 346799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4789999999999999999999999999998876
No 102
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-47 Score=377.48 Aligned_cols=216 Identities=34% Similarity=0.536 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~---~~r 445 (616)
|+++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 12699999999999999999999999999999999999999999999999999877654 347
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
+.++|+||++.+|. .|++||+.++.. ...+ .+++.++++..++.+..+..| .+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hhCCHHHHHHHH
Confidence 88999999999997 699999987521 0111 345677777777766655433 679999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999998875 2789999999999875 599999999999999999998865
No 103
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.1e-47 Score=369.37 Aligned_cols=200 Identities=32% Similarity=0.534 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCC--CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 370 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
|+++||+++|++..+ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999975311 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+|+||+|.+|+.|++||+.++.. .++++..++++.+++.+++..+|.|++|.+.+....||||||||++||||++.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~ 145 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP--FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSD 145 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC--cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999743 456678889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHH-HHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 528 PRILLLDEATSALDAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~-l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
|+++||||||++||+++.+.+.+. +++.. +++|+|++||+++.++.||++++|++|+
T Consensus 146 p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999988885 55543 4689999999999998899999999985
No 104
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=389.87 Aligned_cols=215 Identities=36% Similarity=0.589 Sum_probs=194.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..++++||+.+|. +..+++|+||+|++||++++.||||||||||+++|+||.+|++|+|.+||.|+..+++. ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999997 34799999999999999999999999999999999999999999999999999998876 568
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
|++|+|+--||+ -||+|||.||-. .... ++++.++++.+++.++-.+.| ..|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence 999999999995 799999999954 1112 247899999999999988877 6799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||..+|++|+||||.||||.+-...+...++++. -+.|.|+|||+-+. +..+|||.||++|+|.+.||++|++.+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999988887654 38899999999974 788999999999999999999999976
Q ss_pred C
Q 007152 598 G 598 (616)
Q Consensus 598 ~ 598 (616)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 4
No 105
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-47 Score=382.34 Aligned_cols=220 Identities=33% Similarity=0.526 Sum_probs=191.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~ 440 (616)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999964 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCCC--CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~--~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
...+|++++|+||++.+|+.|++||+.++... ..+ +++++++++.+++.+.+. ..+.+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 67789999999999999999999999975320 122 245677888887754332 23455677899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999875 599999999999999999999
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+.+.
T Consensus 242 ~~~~ 245 (260)
T PRK10744 242 IFTK 245 (260)
T ss_pred HHhC
Confidence 8764
No 106
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-47 Score=374.21 Aligned_cols=204 Identities=35% Similarity=0.554 Sum_probs=177.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+. +++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999964 369999999999999999999999999999999999999999999999999986543 577899
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~-~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|. .|++||+.++... .. .++++.++++..++.++....| .+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999886 6999999875320 11 1345677788877776655444 5799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEec
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESG 589 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G 589 (616)
|+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999998875 378999999999986 459999999999998865
No 107
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-47 Score=387.17 Aligned_cols=216 Identities=29% Similarity=0.519 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~--~~~~~~~r~ 446 (616)
-|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 345677899
Q ss_pred ccEEEccCC--CcCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~--~lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
.++|+||++ .+|+.|++||+.++... ..+ ++++.++++..++.++.+ ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 999999998 57899999999875310 122 244677778888765533 345789999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988753 799999999999986 699999999999999999999876
Q ss_pred c
Q 007152 597 K 597 (616)
Q Consensus 597 ~ 597 (616)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 108
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-47 Score=384.60 Aligned_cols=217 Identities=33% Similarity=0.620 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999642 34799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCC--CcCCccHHHHHhcCCCC-CCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEP--VLFNCSIEENIAYGCDG-KASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~--~lf~~TIreNi~~g~~~-~~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|+||++ .+++.|++||+.++... ..+.+ ++.++++..++.++.++.| .+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 45678999999985310 12222 3567778888877665544 68999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999889999999999999999999888764
No 109
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=6e-47 Score=374.02 Aligned_cols=213 Identities=29% Similarity=0.448 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~i 448 (616)
|+++||+++|++ .++++|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999964 369999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+|+||++.+|.+ |++||+.++.. ... .+++.++++.. ..++ .........||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHH
Confidence 999999999986 99999998743 121 11223333322 1122 22334556799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+.+++.+
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999999998875 578999999999986 5599999999999999999988754
No 110
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-47 Score=383.63 Aligned_cols=220 Identities=31% Similarity=0.499 Sum_probs=191.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~~ 440 (616)
+.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|++||.++.. .+
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 47999999999973 3699999999999999999999999999999999999975 89999999999865 45
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCC------CCC-CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD------GKA-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~------~~~-~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
...+|+.++|++|++.+|+.|++||+.++.. ... .++++.++++.+++.+++. +........||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 6678899999999999999999999987521 011 1345678888888865442 2234556789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ +.||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999887788999999999998 558999999999999999999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14235 248 KMFTN 252 (267)
T ss_pred HHHhC
Confidence 98753
No 111
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.2e-47 Score=396.20 Aligned_cols=202 Identities=32% Similarity=0.519 Sum_probs=182.1
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----hcccEEEccCCCcCC-
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL----HRKISIVSQEPVLFN- 459 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~----r~~i~~v~Q~~~lf~- 459 (616)
+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++..++..++ |+.++||+|++.+|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 468999999999999999999999999999999999999999999999999999998888 789999999999997
Q ss_pred ccHHHHHhcCCCC-CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007152 460 CSIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 534 (616)
Q Consensus 460 ~TIreNi~~g~~~-~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLD 534 (616)
.|++|||.++... .. .++++.++++.+++.++..+.| .+||||||||++|||||+++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999986320 11 2356788888888877766655 479999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 535 EATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 535 EpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||+||+.+.+.+.+.+.++. .++|+|+|||+++. .+.||+|++|++|++++.|+++|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999998774 37999999999996 567999999999999999999999875
No 112
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-47 Score=381.22 Aligned_cols=220 Identities=30% Similarity=0.479 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCC--CCCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLV--EISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~--~~~~ 441 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcccEEEccCCCcCCc-cHHHHHhcCCC-CC------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 442 EHLHRKISIVSQEPVLFNC-SIEENIAYGCD-GK------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~-TIreNi~~g~~-~~------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
..+|+.++|+||++.+|.. |++||+.++.. .. ..++++.++++..++.+++. .........||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 6788999999999999975 99999987531 01 11234667777777654432 1234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 592 (616)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877799999999999875 59999999999999999999
Q ss_pred HHhhcC
Q 007152 593 ELLSKG 598 (616)
Q Consensus 593 eL~~~~ 598 (616)
++.+..
T Consensus 234 ~~~~~~ 239 (253)
T PRK14267 234 KVFENP 239 (253)
T ss_pred HHHhCC
Confidence 987653
No 113
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-47 Score=387.92 Aligned_cols=218 Identities=27% Similarity=0.456 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC----CCHHH
Q 007152 370 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----ISHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~----~~~~~ 443 (616)
++++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1469999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEccCC--CcCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 444 LHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 444 ~r~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
+|+.|+||||+| .+|+.|++|||.++.. ...+. +++.++++.+++.+.+. ......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 888999999998 6888999999998632 01232 34566777777752221 2334679999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 593 (616)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+ +.||+|++|++|++++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 78999999999987 5699999999999999999998
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 114
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-47 Score=371.69 Aligned_cols=204 Identities=28% Similarity=0.476 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999964 36999999999999 99999999999999999999999999999999999998776 77889999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|.+ |++||+.+... ... .++++.++++..++.++.+.. ...||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKK-----------IGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCc-----------hhhCCHHHHHHHHHHHH
Confidence 99999999986 99999987421 011 134577888888887654432 25799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877799999999999885 59999999999998865
No 115
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7e-47 Score=395.35 Aligned_cols=214 Identities=31% Similarity=0.500 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3689999999999999999999999999999999999999999999999999877654 6789
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.+|+ .|++|||.|+... ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 6999999987421 112 345778888888877765554 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+++|++++||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|++++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999988754 78999999999975 669999999999999999999998754
No 116
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-46 Score=383.83 Aligned_cols=217 Identities=31% Similarity=0.534 Sum_probs=191.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-++++||+++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999642 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCC--CcCCccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~--~lf~~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|++|++ .+|+.|++||+.++.. ...+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 4788999999987531 0122 235778888888877766554 57999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|||+.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++|+++..
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 999999999999999999999999999999988753 78999999999988 579999999999999999999997643
No 117
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-47 Score=356.90 Aligned_cols=215 Identities=36% Similarity=0.541 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHHHh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEHLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~---~~~~r 445 (616)
.|+++||+..||+ .+.+|+||||+|++||+|||+|+||||||||++.|.|+.+|++|+|+++|.++...+ ...||
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 5899999999985 457999999999999999999999999999999999999999999999999999888 66778
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCCC----------CCC---HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCDG----------KAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~~----------~~~---~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
++||+++|++.|-+ -|+.+|+..|.-. -.+ ..+..++++.+|+.+..- .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999999976 5999999988632 123 334667788888877643 3467899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEe
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVES 588 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~ 588 (616)
|||+||++|||||..+|+|++-|||+|+|||.+.+.|++.|++.. .|.|+|+.-|.+++. ++||||+=|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 589999999999986 56999999999999999
Q ss_pred cChhHHhh
Q 007152 589 GTHEELLS 596 (616)
Q Consensus 589 G~~~eL~~ 596 (616)
|+.+|+-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999643
No 118
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.4e-46 Score=374.70 Aligned_cols=221 Identities=29% Similarity=0.477 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 36999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEccCCCc-CCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVL-FNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~l-f~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+ +..|++||+.++.. ...+. +++.++++..++ +.........|||||+||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHH
Confidence 99999988 56899999987532 11222 234444554444 333445556899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCC--
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGG-- 599 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~-- 599 (616)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+..+
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 226 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGA 226 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCcc
Confidence 999999999999999999999999999999875 4789999999999998899999999999999999999987632
Q ss_pred hhHHHH
Q 007152 600 VYTALV 605 (616)
Q Consensus 600 ~y~~l~ 605 (616)
.+.+.+
T Consensus 227 ~~~~~~ 232 (236)
T TIGR03864 227 DLEAAF 232 (236)
T ss_pred cHHHHH
Confidence 344444
No 119
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=4.3e-47 Score=373.99 Aligned_cols=205 Identities=33% Similarity=0.483 Sum_probs=176.2
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH----H
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH----L 444 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~----~ 444 (616)
|+++||+++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 147999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcccEEEccCCCcCCc-cHHHHHhcCCCC-CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 445 HRKISIVSQEPVLFNC-SIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~-TIreNi~~g~~~-~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
++.++|+||++.+|.+ |++||+.++... .. .++++.++++..++.+..+.. ..+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHY-----------PSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcC-----------hhhcCHHHHHHH
Confidence 6789999999999986 999999986321 11 134566777777766554433 368999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998764 7899999999999889999999999974
No 120
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=9.3e-47 Score=398.29 Aligned_cols=222 Identities=27% Similarity=0.483 Sum_probs=196.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 3699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCc-CCccHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 449 SIVSQEPVL-FNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g~~~---------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+||+|++.+ |+.|++||+.++... ..++++++++++.+++.++.++. ...||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----------~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----------VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHH
Confidence 999999987 678999999987420 12345688899999988776442 357999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
+|||||+++|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+ +.||++++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 578999999999998 6699999999999999999999875
Q ss_pred cCChhHHHH
Q 007152 597 KGGVYTALV 605 (616)
Q Consensus 597 ~~~~y~~l~ 605 (616)
. ....+.|
T Consensus 229 ~-~~l~~~~ 236 (402)
T PRK09536 229 A-DTLRAAF 236 (402)
T ss_pred c-HHHHHHh
Confidence 4 3344444
No 121
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-46 Score=387.44 Aligned_cols=217 Identities=25% Similarity=0.432 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC---------
Q 007152 370 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--------- 438 (616)
Q Consensus 370 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~--------- 438 (616)
|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997531 1369999999999999999999999999999999999999999999999987632
Q ss_pred ---------------CCHHHHhcccEEEccCC--CcCCccHHHHHhcCCC-CCCC----HHHHHHHHHHcCch-HHHHcC
Q 007152 439 ---------------ISHEHLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAH-DFISNF 495 (616)
Q Consensus 439 ---------------~~~~~~r~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~-~~i~~L 495 (616)
.+...+|+.|+||||+| .+|..|++|||.|+.. ...+ ++++.++++.+++. ++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-- 160 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ-- 160 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence 13567889999999986 6888999999998732 0122 34467777777774 3433
Q ss_pred CCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hh
Q 007152 496 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QS 573 (616)
Q Consensus 496 p~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~ 573 (616)
.....||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 3346899999999999999999999999999999999999999999998875 489999999999865 67
Q ss_pred cCEEEEEeCCEEEEecChhHHhhc
Q 007152 574 ADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 574 aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||+|++|++|+|++.|+.+|+.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
No 122
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.6e-47 Score=370.01 Aligned_cols=200 Identities=33% Similarity=0.543 Sum_probs=176.7
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.. ..+++.++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999741 469999999999999999999999999999999999999999999999998854 567788999
Q ss_pred EccCC--CcCCccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 451 VSQEP--VLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 451 v~Q~~--~lf~~TIreNi~~g~~~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
+||++ .+|+.|++||+.++.+. ...++++.++++..++.++.++.| ..||||||||++||||++++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 46789999999986431 123457889999999987766655 47999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 586 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv 586 (616)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999887 45789999999999886 59999999999975
No 123
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-47 Score=383.11 Aligned_cols=219 Identities=32% Similarity=0.533 Sum_probs=188.1
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----hc
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL----HR 446 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~----r~ 446 (616)
.++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+..++ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45678888853 368999999999999999999999999999999999999999999999999988776553 46
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
+++|+||++.+|. .|++||+.++.. ....++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999985 699999987521 0112345778888888887777666 3799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+ +.||++++|++|++++.|+++|+.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998875 379999999999986 56999999999999999999999764
Q ss_pred -CChhHH
Q 007152 598 -GGVYTA 603 (616)
Q Consensus 598 -~~~y~~ 603 (616)
...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 333443
No 124
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-46 Score=371.68 Aligned_cols=210 Identities=26% Similarity=0.467 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEE
Confidence 578999999964 369999999999999999999999999999999999999999999999998875 3467788999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|+. |++||+.++.. ... .++++.++++..++.++.+..| ..||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-----------KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999998875 99999987421 011 2345788888888877655443 4799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
++.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 789999999999875 5999999999999999998775
No 125
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-46 Score=382.81 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---CEEEECCEeCCCCCHHHHh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNGVPLVEISHEHLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~---G~I~idg~~i~~~~~~~~r 445 (616)
.|+++|++|+|++. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999743 3469999999999999999999999999999999999999998 8999999999888878888
Q ss_pred cccEEEccCC--CcCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 RKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 ~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
++++|+||++ .+++.|++|||.++.+ ...+. +++.++++.+++.++.+..| .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 9999999998 4678999999998632 11233 34778888888887776665 68999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988753 789999999999999999999999999999999998765
No 126
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-47 Score=377.21 Aligned_cols=217 Identities=33% Similarity=0.542 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999742 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999996 699999987521 0111 234566666666643 012234457899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 79999999999975 56999999999999999999998754
No 127
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=383.97 Aligned_cols=218 Identities=28% Similarity=0.498 Sum_probs=192.5
Q ss_pred cEEEEeEEEECCCCC---CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHH
Q 007152 369 EVELDDVWFAYPSRP---NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHL 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~---~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~-~~~~ 444 (616)
-++++|++++|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 246999999999999999999999999999999999999999999999999997654 4667
Q ss_pred hcccEEEccCCC--cCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 445 HRKISIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 r~~i~~v~Q~~~--lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
|+.++|+||+|. +|..|+.||+.++... ..+ ++++.++++.+++.++.++.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 7777999999986310 112 356788899999988877665 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
++|||||+++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999999889999999999999999999987
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 128
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=381.44 Aligned_cols=218 Identities=31% Similarity=0.488 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999753 24699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCC--cCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~~--lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|+||+|. ++..|+++|+.++... ... ++++.++++..++.++.+. ...+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 4567899999886321 112 2356677777777655433 3467999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999999988753 78999999999998889999999999999999999987653
No 129
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=393.48 Aligned_cols=213 Identities=33% Similarity=0.534 Sum_probs=188.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++...++ .++.++
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 789999999974 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC-----CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG-----KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~-----~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
||+|++.+|+ .|++||+.++... ..+ ++++.++++..++.++.++.| ..||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 9999999997 5999999987320 112 346778888888877766555 579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+|++.|+++|+++
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988764 68999999999975 5699999999999999999999987
Q ss_pred cC
Q 007152 597 KG 598 (616)
Q Consensus 597 ~~ 598 (616)
+.
T Consensus 227 ~p 228 (353)
T PRK10851 227 EP 228 (353)
T ss_pred Cc
Confidence 53
No 130
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.3e-46 Score=370.46 Aligned_cols=208 Identities=26% Similarity=0.450 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCCC-CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 370 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~-~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
|+++||+++|++... .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 169999999999999999999999999999999999999999999999999975 456788999
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+|+||++.+|.. |++||+.+... ... .++++.++++..++.+..+ .....||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHH
Confidence 999999999985 99999986421 011 1345667777777765544 345689999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
|++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998875 4789999999999865 59999999999998765
No 131
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.3e-46 Score=371.32 Aligned_cols=206 Identities=32% Similarity=0.478 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~r 445 (616)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 146999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cccEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 -RKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 -~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+.++|+||++.+|+ .|++||+.++.. ...+ ++++.++++..++++..... ...||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHR-----------PSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 68999999999996 699999987421 0111 23456667776665554433 367999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEE
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIV 586 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Iv 586 (616)
+||||++++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.++.+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999998875 378999999999999999999999999986
No 132
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.6e-46 Score=373.48 Aligned_cols=213 Identities=29% Similarity=0.468 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~i 448 (616)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999974 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+|+||++.+|++ |++||+.++.+. .... +++.++++..++ +.........||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-----------THLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHHHH
Confidence 999999999986 999999975321 1122 223444444444 33344555789999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999998875 478999999999765 5699999999999999999999864
No 133
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-46 Score=367.89 Aligned_cols=204 Identities=29% Similarity=0.444 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999988764 56788999
Q ss_pred EEccCCCcC-CccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+||++.+| +.|++||+.++.. ...+++++.++++..++.+..++. ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 5799999987531 123566788899999887765443 357999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 4789999999999885 59999999999998865
No 134
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=377.56 Aligned_cols=219 Identities=32% Similarity=0.503 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~~~~~ 443 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 3699999999999999999999999999999999999984 6999999999999888888
Q ss_pred HhcccEEEccCCCcC-CccHHHHHhcCCCC-C------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 444 LHRKISIVSQEPVLF-NCSIEENIAYGCDG-K------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf-~~TIreNi~~g~~~-~------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
+|+.|+|+||++.+| +.|++||+.++... . ..++++.++++..++.+.+. +.++ ....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~----~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLD----APAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhc----CCcccCCHHHH
Confidence 999999999999755 67999999875310 0 11345778888888765432 1223 33467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999987 46999999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 764
No 135
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.7e-46 Score=394.36 Aligned_cols=214 Identities=34% Similarity=0.564 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999964 3689999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.+|.. |++|||.|+... ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999987420 112 345788899999988888777 479999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+.++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988764 78999999999975 679999999999999999999998753
No 136
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.2e-46 Score=376.94 Aligned_cols=214 Identities=33% Similarity=0.476 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---------
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--------- 440 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~--------- 440 (616)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999974 36999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcccEEEccCCCcCC-ccHHHHHhcCCCC--CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 441 ----HEHLHRKISIVSQEPVLFN-CSIEENIAYGCDG--KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 441 ----~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~--~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
...+|+.++|++|++.+|. .|++||+.++... .. .++++.++++..++.++.... ...
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhh
Confidence 2467889999999999885 7999999975210 11 234466777777776655444 368
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIV 586 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Iv 586 (616)
||||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+ +.||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 78999999999988 469999999999999
Q ss_pred EecChhHHhhc
Q 007152 587 ESGTHEELLSK 597 (616)
Q Consensus 587 e~G~~~eL~~~ 597 (616)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999754
No 137
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-46 Score=379.60 Aligned_cols=222 Identities=29% Similarity=0.445 Sum_probs=194.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~---------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+|+||++.++.+ |++||+.++... ...++++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 999999877664 999999975310 112456788899988877665554 47999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+||||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+.+|+.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999998875 378999999999988 469999999999999999999986
Q ss_pred hcCChhHHHH
Q 007152 596 SKGGVYTALV 605 (616)
Q Consensus 596 ~~~~~y~~l~ 605 (616)
+. ..+..++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 53 3344444
No 138
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.8e-46 Score=392.71 Aligned_cols=216 Identities=31% Similarity=0.523 Sum_probs=191.6
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC--CEEEECCEeCCCCCHHHH
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK--GKILLNGVPLVEISHEHL 444 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~--G~I~idg~~i~~~~~~~~ 444 (616)
++.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.++ .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 357999999999964 369999999999999999999999999999999999999999 999999999987665 3
Q ss_pred hcccEEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 445 HRKISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
++.|+||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++.++.| .+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHH
Confidence 6789999999999965 99999998632 1122 345778888888888877766 47999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
+|||||+++|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+.+|+
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988754 68999999999975 56999999999999999999999
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
+++.
T Consensus 227 ~~~p 230 (362)
T TIGR03258 227 YDAP 230 (362)
T ss_pred HhCc
Confidence 8753
No 139
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.8e-46 Score=379.35 Aligned_cols=224 Identities=25% Similarity=0.406 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~---~~r 445 (616)
.|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 5899999999963 3699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEccCCCcCCc-cHHHHHhcCCCC--CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 RKISIVSQEPVLFNC-SIEENIAYGCDG--KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-TIreNi~~g~~~--~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+.++|+||++.+|++ |++||+.++... ..+. +++.++++..++.+..+.. ...||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLM-----------PSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHH
Confidence 789999999999986 999999874210 1122 3455667776665543332 357999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 789999999998875 49999999999999999999998
Q ss_pred hcC-ChhHHHHH
Q 007152 596 SKG-GVYTALVK 606 (616)
Q Consensus 596 ~~~-~~y~~l~~ 606 (616)
++. ..++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 653 33455554
No 140
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.2e-46 Score=373.74 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~ 447 (616)
-|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 3789999999974 369999999999999999999999999999999999999999999999999988776654 567
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCC-------------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGK-------------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~-------------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
++|+||++.+|++ |++||+.++.... ..++++.++++..++.+. .......||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHH
Confidence 9999999999986 9999999863210 012345555555555433 33445689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 592 (616)
|+||++||||++++|+++|||||||+||+++.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 99999999999999999999999999999999999999998877899999999999986 59999999999999999999
Q ss_pred HHhh
Q 007152 593 ELLS 596 (616)
Q Consensus 593 eL~~ 596 (616)
++..
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 9864
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=378.25 Aligned_cols=222 Identities=27% Similarity=0.492 Sum_probs=193.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..++..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~~---------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
|+||++.+|.+ |++||+.++... ...++++.++++..++.++.+.. ...|||||+||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHH
Confidence 99999998876 999999986310 11234577788888876654433 4679999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998875 4789999999999875 6999999999999999999998753
Q ss_pred CChhHHHHH
Q 007152 598 GGVYTALVK 606 (616)
Q Consensus 598 ~~~y~~l~~ 606 (616)
..+.+.+.
T Consensus 229 -~~~~~~~~ 236 (255)
T PRK11231 229 -GLLRTVFD 236 (255)
T ss_pred -HHHHHHhC
Confidence 44555553
No 142
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-46 Score=376.79 Aligned_cols=220 Identities=31% Similarity=0.499 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~~ 441 (616)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~-----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|++|++.+|+.|++||+.++... .. .++++.++++..++.+.. + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 6778899999999999999999999875310 11 123466677777764321 1 122345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999865 5999999999999999999998
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
....
T Consensus 234 ~~~~ 237 (251)
T PRK14251 234 FIAP 237 (251)
T ss_pred HhCC
Confidence 7543
No 143
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-46 Score=394.37 Aligned_cols=213 Identities=31% Similarity=0.493 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.+|. .|++||+.++... ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999986320 112 345778888888877666555 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+.+|+.+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988753 78999999999876 56999999999999999999999764
No 144
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.6e-46 Score=388.06 Aligned_cols=224 Identities=30% Similarity=0.451 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCC----------CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 007152 369 EVELDDVWFAYPSRP----------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 438 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~ 438 (616)
-++++|++++|+... ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcccEEEccCC--CcC-CccHHHHHhcCCC---CCCCH----HHHHHHHHHcCch-HHHHcCCCccccccc
Q 007152 439 ISHEH---LHRKISIVSQEP--VLF-NCSIEENIAYGCD---GKASS----ADIENAAKMANAH-DFISNFPEKYQTFVG 504 (616)
Q Consensus 439 ~~~~~---~r~~i~~v~Q~~--~lf-~~TIreNi~~g~~---~~~~~----~~i~~al~~a~l~-~~i~~Lp~GldT~vg 504 (616)
++..+ +|+.|+||+|+| .+| ..||.|||.++.. ...+. +.+.++++.+++. +..++
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87654 678999999998 477 4799999975310 01232 3456667777773 23333
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEe
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVS 581 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~ 581 (616)
....||||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|+
T Consensus 158 -~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 -YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 3357999999999999999999999999999999999999999999988753 789999999999986 499999999
Q ss_pred CCEEEEecChhHHhhcC-ChhHH
Q 007152 582 DGEIVESGTHEELLSKG-GVYTA 603 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~~-~~y~~ 603 (616)
+|+|+|.|+.+++.++. ..|.+
T Consensus 237 ~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 237 LGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999998653 34544
No 145
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-46 Score=379.18 Aligned_cols=215 Identities=33% Similarity=0.545 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~-~~~~r~~i 448 (616)
++++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 236999999999999999999999999999999999999999999999999998776 46788899
Q ss_pred EEEccCCC--cCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 449 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 449 ~~v~Q~~~--lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+|+||+|. +++.|++|||.++... ..+ ++++.++++..++.++.+.. ...||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHH
Confidence 99999985 5778999999886321 122 34466777777776665443 368999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||++.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998875 47999999999999999999999999999999999887653
No 146
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-46 Score=379.19 Aligned_cols=221 Identities=31% Similarity=0.504 Sum_probs=191.7
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--C
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--I 439 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~ 439 (616)
.+.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999964 3699999999999999999999999999999999999984 89999999999864 4
Q ss_pred CHHHHhcccEEEccCCCcCCccHHHHHhcCCC-CCC-----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 440 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 440 ~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~-----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
+...+|+.++|+||++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. +..+..+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 45678899999999999999999999987521 011 1244677777777765443 2345667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ +.||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 9999999999999999999999999999999999999999887789999999999986 469999999999999999999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 147
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=376.78 Aligned_cols=219 Identities=33% Similarity=0.522 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC---CCC--CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF---YDP--IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~---~~~--~~G~I~idg~~i~~~--~~ 441 (616)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 5899999999964 3699999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++||+.++.. .. ..+++++++++.+++.+++. +........||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678889999999999999999999987531 01 12345667777777755443 233456778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999987 56999999999999999999999
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 764
No 148
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=377.79 Aligned_cols=219 Identities=31% Similarity=0.468 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--P---IKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~--~---~~G~I~idg~~i~~--~~~ 441 (616)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999974 369999999999999999999999999999999999997 3 59999999999864 445
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-C-CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-K-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~-~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++||+.++... . .++ +++.++++..++.+++. +.+.....+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788999999999999999999999876310 1 122 23556677777655432 223456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 6999999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.++
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 754
No 149
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.6e-46 Score=368.53 Aligned_cols=204 Identities=31% Similarity=0.562 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999974 3699999999999999999999999999999999999999999999999999766543 46899
Q ss_pred EEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.++.+..| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999985 699999987521 0112 234667777777776655443 5799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 589 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G 589 (616)
++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999998875 37899999999998764 9999999999999876
No 150
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.4e-46 Score=370.01 Aligned_cols=211 Identities=27% Similarity=0.443 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 3699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccCCCcCCccHHHHHhcCC---CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 449 SIVSQEPVLFNCSIEENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~---~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
+|++|++.+|+.|++||+.++. ....+++++.++++..++.+ +........|||||+||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998641 11122344566666666642 2233456789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEe-CCEEEEecChh
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVS-DGEIVESGTHE 592 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~-~G~Ive~G~~~ 592 (616)
++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999875 3789999999999999999999994 67778999996
No 151
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=377.65 Aligned_cols=221 Identities=30% Similarity=0.487 Sum_probs=192.0
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--C
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--I 439 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~ 439 (616)
...|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcccEEEccCCCcCCccHHHHHhcCCCC--CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 440 SHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG--KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 440 ~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~--~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
+...+|+.++|+||++.+|..|++||+.++... .. .++++.++++..++.+++. +........||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 456778899999999999999999999985320 11 1345677788887765542 3345667889999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
||||++||||++++|+++||||||++||+.+...+.+.|+++.++.|+|+|||+++.+ +.||+|++|++|++++.|+.+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999887789999999999987 569999999999999999999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
++.+.
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 99764
No 152
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-46 Score=374.86 Aligned_cols=220 Identities=35% Similarity=0.546 Sum_probs=188.9
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~~ 440 (616)
+.|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 3699999999999999999999999999999999999863 69999999999874 45
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
...+|+.++|+||++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 6678899999999999999999999998631 01 12345666777777654432 22344567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
|||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999764 599999999999999999999
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
No 153
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-46 Score=377.45 Aligned_cols=219 Identities=32% Similarity=0.516 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~--~~ 441 (616)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
..+|+.++|+||++.+|+.|++||+.++.. ...+. +++.++++.+++.+.+. + ........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~----~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---D----RLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---h----hhcCChhhCCHHHHH
Confidence 567889999999999999999999997531 01222 34666777777653321 1 223445689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999874 59999999999999999999997
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
+.
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 54
No 154
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-46 Score=372.94 Aligned_cols=214 Identities=31% Similarity=0.487 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC------CCCHHH
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV------EISHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~------~~~~~~ 443 (616)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ......
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 36999999999999999999999999999999999999999999999999873 223467
Q ss_pred HhcccEEEccCCCcCCc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 444 LHRKISIVSQEPVLFNC-SIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~~-TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
+|+.++|+||++.+|.+ |++||+.++.. ...+ .+++.++++..++.+++...| ..|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHH
Confidence 78899999999999975 99999975310 0111 234556666666655554443 589999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|++||||++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998875 4799999999999985 5999999999999999999987
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 643
No 155
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.1e-46 Score=373.23 Aligned_cols=214 Identities=29% Similarity=0.476 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--HHHHhcc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--HEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~--~~~~r~~ 447 (616)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 36999999999999999999999999999999999999999999999999987643 4677889
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
++|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+..+. ....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHH
Confidence 999999999886 699999987521 0112 2335566666666554433 346899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||++++|+++||||||++||+++...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4799999999999985 5999999999999999999998754
No 156
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.7e-46 Score=367.80 Aligned_cols=202 Identities=36% Similarity=0.631 Sum_probs=175.7
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++|++++|++. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999742 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCC--CcCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 451 VSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 451 v~Q~~--~lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+||++ .+++.|++||+.++... ..+ ++++.++++..++.+++++. ...||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHH
Confidence 99998 36788999999875320 112 23466677777776655443 36799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 584 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~ 584 (616)
|+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 47899999999999876 99999999985
No 157
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-46 Score=369.15 Aligned_cols=207 Identities=34% Similarity=0.521 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCC-CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 370 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~-~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
|+++|++++|++... +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 478999999974211 479999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||||++.+|. .|++||+.++.. ... .++++.++++..++.++..+.| .+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 699999987521 011 2345778888888877665554 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEe--CCEEEEecChh
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVS--DGEIVESGTHE 592 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~--~G~Ive~G~~~ 592 (616)
|++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998874 378999999999976 5699999999 79999988753
No 158
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-46 Score=375.19 Aligned_cols=219 Identities=32% Similarity=0.514 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CC---CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DP---IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~--~~---~~G~I~idg~~i~~~--~~ 441 (616)
.++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +| ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 36999999999999999999999999999999999995 36 599999999998643 34
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC--CC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD--GK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~--~~----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++||||++.+|+.|++||+.++.. .. ..++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 677889999999999999999999987521 01 11234566677777654332 234556678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887779999999999876 56999999999999999999999
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 764
No 159
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.5e-46 Score=373.84 Aligned_cols=215 Identities=32% Similarity=0.467 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--------
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-------- 440 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~-------- 440 (616)
-++++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3899999999974 36999999999999999999999999999999999999999999999999987542
Q ss_pred HHHHhcccEEEccCCCcCC-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 441 HEHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~--~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
...+|+.++||||++.+|. .|++||+.++.. ..... +++.++++..++.+. .......||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 3567889999999999886 699999987411 01122 234455555555433 23445789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecCh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~ 591 (616)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998875 4789999999999885 5999999999999999999
Q ss_pred hHHhhc
Q 007152 592 EELLSK 597 (616)
Q Consensus 592 ~eL~~~ 597 (616)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 998754
No 160
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-46 Score=373.43 Aligned_cols=206 Identities=33% Similarity=0.440 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999964 36999999999999999999999999999999999999999999999998763 567889
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
+|++|++.+|+ .|++||+.++.. ...++++.++++..++.++... ...+||||||||++|||||+++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 699999998643 2235678888888888765443 3468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|++++.|+.++.
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDLP 221 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccccC
Confidence 99999999999999999999999998864 378999999999987 56999999999999999886543
No 161
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-46 Score=378.77 Aligned_cols=214 Identities=31% Similarity=0.513 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhcc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~--~~~~~~~r~~ 447 (616)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999964 36999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred cEEEccCCC--cCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEPV--LFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~~--lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
++||||++. +|..|+.+|+.++.. ...+. +++.++++..++.++.+. ....||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ-----------PIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC-----------CchhCCHHHHHHHHH
Confidence 999999986 677899999987421 01222 345667777777655322 346799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||+.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||++++|++|++++.|+.+++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998875 478999999999988 45999999999999999999988664
No 162
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.6e-46 Score=356.23 Aligned_cols=178 Identities=37% Similarity=0.684 Sum_probs=166.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..+ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999753 23699999999999999999999999999999999999999999999999998766 667889999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|+||++.+|+.|++||+ ...||||||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 46899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999887789999999999999999999999999998765
No 163
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.2e-46 Score=366.14 Aligned_cols=210 Identities=29% Similarity=0.449 Sum_probs=188.6
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHHhc
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHLHR 446 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~----~~~r~ 446 (616)
.+.|++|+|+.. .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 568999999743 469999999999999999999999999999999999999999999999998876542 34567
Q ss_pred ccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 447 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
.++|++|++.+|+.|++||+.++.+ .++++..++++.+++.++++.+|.|++|.++....+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999998753 45667788999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHH--HHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 527 NPRILLLDEATSALDAESEYLVQD--AMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~--~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
+|+++||||||++||+.+.+.+.+ .++.+. .+.|+|++||+.+.++.||++++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999998887 344443 3689999999999999999999999884
No 164
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-46 Score=376.92 Aligned_cols=218 Identities=30% Similarity=0.495 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCCCC--HH
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEIS--HE 442 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~~~--~~ 442 (616)
-+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 369999999999999999999999999999999999986 47999999999987553 34
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCC-CC------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCD-GK------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
.+|+.++|+||++.+|++|++||+.++.. .. ..++++.++++..++.+++. +.+...+..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 67889999999999999999999987521 01 11344667778777755422 234455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999999
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 764
No 165
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-46 Score=377.13 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~~ 441 (616)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999964 369999999999999999999999999999999999864 789999999999865 345
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC--CC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD--GK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~--~~----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+++.++|+||++.+|++|++||+.++.. .. ..++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999987521 01 11234666777776643221 223455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ +.||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887778999999999976 46999999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
...
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 764
No 166
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.8e-46 Score=374.40 Aligned_cols=217 Identities=32% Similarity=0.472 Sum_probs=186.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC--------
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI-------- 439 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~-------- 439 (616)
+.|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 3699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcccEEEccCCCcCC-ccHHHHHhcCCC--CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 440 -----SHEHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 440 -----~~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~--~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
....+|+.++|+||++.+|. .|++||+.++.. ... .++++.++++..++.+... ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 13567889999999999997 599999986420 011 1345667777777755431 2345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 585 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~I 585 (616)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 6899999999999999999999999999999999999999999998875 48999999999999875 999999999999
Q ss_pred EEecChhHHhhc
Q 007152 586 VESGTHEELLSK 597 (616)
Q Consensus 586 ve~G~~~eL~~~ 597 (616)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 167
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.8e-46 Score=367.09 Aligned_cols=202 Identities=33% Similarity=0.521 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~---~~r~ 446 (616)
|+++|++++|++ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999887643 4678
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
.++|+||++.+|. .|++||+.++.. ....+++++++++..++.++....| ..||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999986 699999988521 0122456788899988877766554 4799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 584 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~ 584 (616)
||||+++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998875 47999999999998875 99999999985
No 168
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.5e-46 Score=366.44 Aligned_cols=203 Identities=32% Similarity=0.507 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~r~ 446 (616)
|+++|++++|++. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 369999999999999999999999999999999999999999999999999987764 34788
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
.++|+||++.+|. .|++||+.++.. ... .++++.++++..++.+..+..| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 9999999999998 599999987531 011 2345677888888876655544 4799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 585 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~I 585 (616)
|||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 57999999999999875 899999999974
No 169
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.3e-46 Score=382.92 Aligned_cols=214 Identities=28% Similarity=0.485 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999997654 4578999
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
||+||++.+|. .|++||+.+... ...+. +++.++++..++. +..++.++ +||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999986 699999986322 11222 2344555555543 34455553 69999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||+++|++++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.++ .||+|++|++|++++.|+.+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 4789999999999885 5999999999999999999999754
No 170
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-46 Score=379.42 Aligned_cols=218 Identities=28% Similarity=0.481 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHH
Q 007152 370 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~----~~~~ 443 (616)
|+++||+++|++.. ..++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEccCC--CcCCccHHHHHhcCCC-CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 444 LHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 444 ~r~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
+|+.|+|+||++ .+|+.|++||+.++.. ...+.++ +.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 888999999998 6888999999987521 0123332 4455555555421 123345689999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 4789999999999875 5999999999999999999988
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 653
No 171
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=372.04 Aligned_cols=215 Identities=32% Similarity=0.479 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+++.+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999974 3699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCCCc-CCccHHHHHhcCCCCC-C----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVL-FNCSIEENIAYGCDGK-A----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g~~~~-~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+|+||++.+ ++.|++||+.++.... . .++++.++++..++.++.++. ...||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHH
Confidence 999999987 6789999998863211 1 234567788888876654433 3689999999999999
Q ss_pred HHc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 523 ALM------MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 523 All------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
||+ ++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999998875 4789999999999875 699999999999999999999
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+.+.
T Consensus 228 ~~~~ 231 (258)
T PRK13548 228 VLTP 231 (258)
T ss_pred HhCh
Confidence 8753
No 172
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3e-46 Score=370.94 Aligned_cols=212 Identities=28% Similarity=0.452 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~i 448 (616)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 36999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-CCCHH-HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-KASSA-DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-~~~~~-~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
+|+||++.+|+. |++||+.++... ..+++ ...++++..+ +++.........||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 999999986421 11212 2233333332 1223334456689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 594 (616)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999988764 7899999999999874 999999999999999999997
No 173
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1e-45 Score=374.62 Aligned_cols=226 Identities=30% Similarity=0.433 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCC------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH
Q 007152 370 VELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~ 443 (616)
|+++||+|+|++. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1347999999999999999999999999999999999999999999999999998877543
Q ss_pred ---HhcccEEEccCCC--cC-CccHHHHHhcCCC------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 444 ---LHRKISIVSQEPV--LF-NCSIEENIAYGCD------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 444 ---~r~~i~~v~Q~~~--lf-~~TIreNi~~g~~------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
+|+.++|+||++. ++ ..|++||+.+... ....++++.++++..++.+. ........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 6788999999983 44 4799999965311 01123456667777666421 1234456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEe
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 588 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~ 588 (616)
||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 789999999999986 5999999999999999
Q ss_pred cChhHHhhc-CChhHHHH
Q 007152 589 GTHEELLSK-GGVYTALV 605 (616)
Q Consensus 589 G~~~eL~~~-~~~y~~l~ 605 (616)
|+++++... ++.++.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999874 33444444
No 174
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.4e-46 Score=367.29 Aligned_cols=209 Identities=28% Similarity=0.425 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCC-CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H
Q 007152 369 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~ 444 (616)
.|+++||+++|++... .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999975311 35999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hcccEEEccCCCcCCc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 445 -HRKISIVSQEPVLFNC-SIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 -r~~i~~v~Q~~~lf~~-TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++.++|+||++.+|.+ |++||+.++.. ....++++.++++..++.++.+..| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3679999999999875 99999986421 0112456788888888877766555 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
++|||||+++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999998874 27899999999999999999999999999864
No 175
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=374.93 Aligned_cols=220 Identities=31% Similarity=0.515 Sum_probs=189.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~ 440 (616)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999964 369999999999999999999999999999999999987 689999999999863 56
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCCC-CC---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~---~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
..++|+.++|+||++.+|..|++||+.++... .. .++++.++++.+++.+.+ ++........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 77889999999999999999999999986421 11 134566677776654322 23344556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeC-----------CE
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSD-----------GE 584 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~-----------G~ 584 (616)
|++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+ +.||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 9999999999999999999999999999999999999887789999999999877 56999999996 67
Q ss_pred EEEecChhHHhhc
Q 007152 585 IVESGTHEELLSK 597 (616)
Q Consensus 585 Ive~G~~~eL~~~ 597 (616)
+++.|+.+++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
No 176
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-46 Score=379.58 Aligned_cols=219 Identities=28% Similarity=0.489 Sum_probs=182.4
Q ss_pred CcEEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC----C-C
Q 007152 368 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE----I-S 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~----~-~ 440 (616)
+.|+++|++++|++.. ..++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999997532 1359999999999999999999999999999999999999999999999999852 2 4
Q ss_pred HHHHhcccEEEccCC--CcCCccHHHHHhcCCCC-CCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 441 HEHLHRKISIVSQEP--VLFNCSIEENIAYGCDG-KASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~--~lf~~TIreNi~~g~~~-~~~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
...+|+.|+|+||++ .+|+.|++||+.++... ..+.++ +.++++..++ |.+ ........||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~---~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PED---YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Chh---HhcCChhhCCHH
Confidence 567888999999998 47888999999986320 122222 3344444443 222 123445789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecC
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 590 (616)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998875 378999999999976 5699999999999999999
Q ss_pred hhHHhh
Q 007152 591 HEELLS 596 (616)
Q Consensus 591 ~~eL~~ 596 (616)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988765
No 177
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-46 Score=372.58 Aligned_cols=220 Identities=31% Similarity=0.535 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~--~~ 441 (616)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+++.++|+||++.+|+.|++||+.++.. .. ..++++.++++..++.+.+. +.......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 567889999999999999999999997531 01 12334667777777765442 224556778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999887789999999999975 56999999999999999999999
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
.+..
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
No 178
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=371.89 Aligned_cols=219 Identities=31% Similarity=0.529 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-----~G~I~idg~~i~~--~~~ 441 (616)
.|+++||+|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999964 36999999999999999999999999999999999999997 6999999999864 345
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-CC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~-~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++||+.++... .. . ++++.++++..++.+.+. ........+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 6788999999999999999999999986310 11 1 233555566666654432 334566789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888778999999999998765 799999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 754
No 179
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=372.21 Aligned_cols=220 Identities=29% Similarity=0.531 Sum_probs=188.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCCEEEECCEeCCCC--C
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--P---IKGKILLNGVPLVEI--S 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~--~---~~G~I~idg~~i~~~--~ 440 (616)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999973 369999999999999999999999999999999999986 4 689999999998643 4
Q ss_pred HHHHhcccEEEccCCCcCC-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 441 HEHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
...+|+.++|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+++.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5577899999999999998 599999987421 0111 2446777778877654432 223456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ +.||++++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999987789999999999987 569999999999999999999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98754
No 180
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=7.7e-46 Score=373.80 Aligned_cols=213 Identities=29% Similarity=0.463 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999964 36999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccCCC-cCCccHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 450 IVSQEPV-LFNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 450 ~v~Q~~~-lf~~TIreNi~~g~~~---------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
|+||++. .+..|++||+.++... ...++++.++++..++.+..+. ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 9999986 4568999999886310 0122356777887777655433 34679999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++|+.+
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999998875 478999999999998 5699999999999999999999865
No 181
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-46 Score=369.21 Aligned_cols=218 Identities=27% Similarity=0.412 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~ 447 (616)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++... +++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
++|++|++.+|++ |++||+.++.. ..+.++..+.++ +.++.++...+ ........||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~-----~~l~~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIK-----WVYELFPRLHE-RRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHH-----HHHHHHHHHHH-HHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999985 99999998642 122222222111 11222211111 1223456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||++++|++|++++.|+++++.+
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999998875 489999999999864 6799999999999999999999975
No 182
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=378.36 Aligned_cols=218 Identities=29% Similarity=0.483 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHH
Q 007152 369 EVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~----~~~ 442 (616)
.|+++||+++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 14699999999999999999999999999999999999999999999999998653 346
Q ss_pred HHhcccEEEccCC--CcCCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhH
Q 007152 443 HLHRKISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 443 ~~r~~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
.+++.++|+||+| .+|+.|++|||.++.. ...+. +++.++++.+++. ++. ......|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 5888999999987531 11222 2356666666664 332 23356899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+ +.||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 478999999999987 569999999999999999999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 88653
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.9e-46 Score=390.26 Aligned_cols=201 Identities=35% Similarity=0.607 Sum_probs=179.1
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----hcccEEEccCCCcCC-c
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL----HRKISIVSQEPVLFN-C 460 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~----r~~i~~v~Q~~~lf~-~ 460 (616)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++..++ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998887654 468999999999996 5
Q ss_pred cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007152 461 SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 535 (616)
Q Consensus 461 TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDE 535 (616)
|++||+.++.. ... .++++.++++.+++.++.++.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998631 011 2356778899999988777666 4799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 536 ATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 536 pTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||+||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998874 478999999999986 56999999999999999999999865
No 184
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.2e-46 Score=366.37 Aligned_cols=199 Identities=33% Similarity=0.532 Sum_probs=172.3
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++||+++|++ .++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999964 36999999999999999999999999999999999999999999999998764 47889999
Q ss_pred EccCCCc---CCccHHHHHhcCCCCC---------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 451 VSQEPVL---FNCSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 451 v~Q~~~l---f~~TIreNi~~g~~~~---------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+||++.+ |+.|++||+.++.... ..++++.++++..++.++.+.. ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999986 6689999998864210 1234578888888887665543 357999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
+||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 6789999999999885 59999999986 56654
No 185
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-45 Score=362.16 Aligned_cols=202 Identities=35% Similarity=0.530 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. . .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987654 357899
Q ss_pred EEccCCCcCCc-cHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~~~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|++|++.+|.+ |++||+.++.... .+++++.++++..++.+.....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998763211 13456888999999987777665 4799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 589 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G 589 (616)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999998855 9999999999998764
No 186
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=375.09 Aligned_cols=219 Identities=29% Similarity=0.469 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~~ 441 (616)
.++++|++|+|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 369999999999999999999999999999999999987 699999999999853 456
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CCCCH-----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKASS-----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~~~-----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+++.++|+||++.+|..|++||+.++.. ...++ +.+.++++..++.+ ++.......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHHH
Confidence 678889999999999999999999987531 01221 22344455444322 223344566788999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 5999999999999999999999
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 764
No 187
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=371.13 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCC-CCCHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLV-EISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~-~~~~~ 442 (616)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999973 3699999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCCC-CC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~-~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.+|+.++|+||++.+|+.|++||+.++... .. + ++++.++++.+++.+.+. +........|||||+|
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 889999999999999999999999976320 11 1 234556677777654432 2334556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999998765 9999999999999999999886
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
+.
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 53
No 188
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.2e-45 Score=380.82 Aligned_cols=214 Identities=29% Similarity=0.460 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.+
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999998754 35678899
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~-~~~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+|+||++.+|. .|++||+.+... ...+.+ ++.++++..++.+ .+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 699999985321 112332 3444555555433 334443 469999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998874 5789999999999885 5999999999999999999998754
No 189
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-46 Score=362.87 Aligned_cols=214 Identities=33% Similarity=0.549 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCE---eCCCCCHHHHh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV---PLVEISHEHLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~---~i~~~~~~~~r 445 (616)
.|+++|++..|+.. ++++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 47889999999743 6899999999999999999999999999999999999999999999999 55553 3334
Q ss_pred cccEEEccCCCcC-CccHHHHHhcCC------CCC-CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 446 RKISIVSQEPVLF-NCSIEENIAYGC------DGK-ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 446 ~~i~~v~Q~~~lf-~~TIreNi~~g~------~~~-~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++||+|+|+.-|| +-||++||.||- |++ ..+.++.+.++.++|..+-++-| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 5799999999998 579999999997 211 23566888899999998888877 6899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHH
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
+||||||...|++|+||||++|||++-.+.+.+-|++... +.|+++|||+.+. .+.||||++|++|+|.+.|+.+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999888887652 7899999999985 678999999999999999999999
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
..+.
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 8653
No 190
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=370.93 Aligned_cols=220 Identities=32% Similarity=0.468 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~--~~ 441 (616)
.|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 5899999999964 3699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-C-----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-K-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~-----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
...|+.++|++|++.+|+.|++||+.++... . ..++++.++++.+++.+.+ .+........||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 6778899999999999999999999986320 0 1123455666666654333 2345667789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999885 6999999999999999999998
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
.+..
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 7643
No 191
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=370.67 Aligned_cols=219 Identities=32% Similarity=0.490 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~--~~ 441 (616)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3699999999999999999999999999999999999875 799999999998653 34
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-CC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~-~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++||+.++... .. + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 5678899999999999999999999975310 11 1 2345677888777544332 23345678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++|||||||+||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999875 5999999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 192
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=371.77 Aligned_cols=215 Identities=24% Similarity=0.406 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~ 447 (616)
.++++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 369999999999999999999999999999999999999999999999999988876665 456
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCC--------------CC--C----HHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDG--------------KA--S----SADIENAAKMANAHDFISNFPEKYQTFVGER 506 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~--------------~~--~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~ 506 (616)
++|+||++.+|.+ |++||+.++... .. . .+++.++++..+ ++......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG-----------LLEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCC-----------hhhhhhCC
Confidence 9999999999985 999999985210 00 0 112333344444 43444556
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCC
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDG 583 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G 583 (616)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999988753 789999999999985 59999999999
Q ss_pred EEEEecChhHHhhc
Q 007152 584 EIVESGTHEELLSK 597 (616)
Q Consensus 584 ~Ive~G~~~eL~~~ 597 (616)
++++.|+.+++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999988653
No 193
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.5e-46 Score=350.54 Aligned_cols=172 Identities=42% Similarity=0.701 Sum_probs=163.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. +.++++|+||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999753 346999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++.||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999998875 47899999999999999999999999974
No 194
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-46 Score=368.00 Aligned_cols=212 Identities=35% Similarity=0.562 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++|+|++ .++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 478999999974 3699999999999999999999999999999999999999999999999999876643 67899
Q ss_pred EEccCCCcCCc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|++|++.+|.+ |++||+.++.. ....++++.++++..++.++....| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999987521 0122456778888888888777666 5899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988763 799999999999875 5999999999999999999998764
No 195
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=364.58 Aligned_cols=211 Identities=35% Similarity=0.538 Sum_probs=186.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++. + .|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 7899999999632 2 399999999999999999999999999999999999999999999998876543 56899
Q ss_pred EEccCCCcCCc-cHHHHHhcCC-CC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGC-DG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~-~~----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|.+ |++||+.++. +. ...++++.++++..++.+++++.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998752 10 112456888999999988877776 3799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999999988753 789999999999875 59999999999999999999988654
No 196
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.3e-45 Score=372.24 Aligned_cols=230 Identities=24% Similarity=0.420 Sum_probs=192.3
Q ss_pred cEEEEeEEEECCCC------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH
Q 007152 369 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~ 442 (616)
.|+++||+++|++. ...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcccEEEccCCC--cCC-ccHHHHHhcCCCC--C----CCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCCh
Q 007152 443 HLHRKISIVSQEPV--LFN-CSIEENIAYGCDG--K----ASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~--lf~-~TIreNi~~g~~~--~----~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSG 512 (616)
.+++.++|+||++. +++ -|+.+|+.+.... . ..++++.++++.+++. +..... ...|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY-----------PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC-----------chhcCH
Confidence 66778999999985 444 3899998753110 1 1234577888888884 333222 357999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 589 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G 589 (616)
|||||++||||++++|+++||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999875 9999999999999999
Q ss_pred ChhHHhhcC--ChhHHHHHHHh
Q 007152 590 THEELLSKG--GVYTALVKRQL 609 (616)
Q Consensus 590 ~~~eL~~~~--~~y~~l~~~~~ 609 (616)
+++++.+.. ..+++++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhcc
Confidence 999998753 45667776543
No 197
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=374.69 Aligned_cols=215 Identities=36% Similarity=0.567 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhcc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~--~~~~~~r~~ 447 (616)
|+++||+++|++ ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2369999999999999999999999999999999999999999999999999852 334568899
Q ss_pred cEEEccCC--CcCCccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~--~lf~~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
|+|+||++ .+|+.|++||+.++... ..+ .+++.++++..++.++.+.. ...|||||+||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP-----------PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCC-----------hhhCCHHHHHHHHH
Confidence 99999998 57889999999875310 122 24567778877776544332 35799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||++.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 4789999999999876 6999999999999999999998753
No 198
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=373.34 Aligned_cols=220 Identities=28% Similarity=0.477 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCC-HH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEIS-HE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~~-~~ 442 (616)
.++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+++ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3699999999999999999999999999999999999986 7999999999998764 45
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCC--CCCCHHHH----HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCD--GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~--~~~~~~~i----~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.+|+.++|+||++.+|+.|++||+.++.. ...+++++ .++++..++.++ +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 77889999999999999999999998631 01244443 344455554332 233455667889999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999865 59999999999999999999998
Q ss_pred hcC
Q 007152 596 SKG 598 (616)
Q Consensus 596 ~~~ 598 (616)
+..
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 653
No 199
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=372.94 Aligned_cols=215 Identities=25% Similarity=0.421 Sum_probs=190.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++||+++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 369999999999999999999999999999999999999999999999999998888888889
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCCC---------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~~---------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++|+||++.+|. .|++||+.++.... ..++++.++++..++.++..+ ....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHH
Confidence 999999999875 69999998752101 123457788888888765443 346899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
++||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999976 56999999999999999999998
Q ss_pred hh
Q 007152 595 LS 596 (616)
Q Consensus 595 ~~ 596 (616)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 75
No 200
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=2e-45 Score=366.36 Aligned_cols=211 Identities=34% Similarity=0.530 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999974 369999999999999999999999999999999999999999999999999986653 477899
Q ss_pred EEccCCCcCCc-cHHHHHhcCCCC-CC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~~-~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|++ |++||+.++.+. .. .++++.++++..++.++.++. ..+|||||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 999999876421 11 134566777777776555443 35799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
++++|+++||||||++||+++++.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999988754 789999999999865 599999999999999999999975
No 201
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=379.91 Aligned_cols=228 Identities=33% Similarity=0.468 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCC-------CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH
Q 007152 369 EVELDDVWFAYPSRP-------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~ 441 (616)
-|+++|++++|+... ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcccEEEccCCC--cCC-ccHHHHHhcC---C---CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 442 E---HLHRKISIVSQEPV--LFN-CSIEENIAYG---C---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 442 ~---~~r~~i~~v~Q~~~--lf~-~TIreNi~~g---~---~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
. .+|++|+||+|+|. |+. -|+.+|+... . ......+++.++++.+++.+ .+++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 4 56789999999994 554 4999998632 1 10112345778888888753 122332 357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 586 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv 586 (616)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999986 59999999999999
Q ss_pred EecChhHHhhcC-ChhHH-HHH
Q 007152 587 ESGTHEELLSKG-GVYTA-LVK 606 (616)
Q Consensus 587 e~G~~~eL~~~~-~~y~~-l~~ 606 (616)
|.|+.++++++. ..|.+ +++
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 999999998753 33544 443
No 202
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=386.68 Aligned_cols=215 Identities=30% Similarity=0.532 Sum_probs=189.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 369999999999999999999999999999999999999999999999999987664 5778
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
++||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++.++.| ..||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999998732 1122 345677888888877766655 47999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|||+++|++|+||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+ ..||+|++|++|+|++.|+.+|++.+.
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998887764 378999999999975 679999999999999999999998754
No 203
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-45 Score=371.99 Aligned_cols=219 Identities=31% Similarity=0.499 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCC--CCCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLV--EISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~--~~~~ 441 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999964 369999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC-CC---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KA---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~---~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
..+|+.++|++|++.+|+.|++||+.++... .. .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 7788999999999999999999999986320 11 23456667788777655432 2345667899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEe---------CCEEEE
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVS---------DGEIVE 587 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~---------~G~Ive 587 (616)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+ +.||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999887778999999999976 5699999998 899999
Q ss_pred ecChhHHhhc
Q 007152 588 SGTHEELLSK 597 (616)
Q Consensus 588 ~G~~~eL~~~ 597 (616)
.|+.+|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 204
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.7e-45 Score=363.56 Aligned_cols=205 Identities=30% Similarity=0.456 Sum_probs=176.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~r~ 446 (616)
|+++||+++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 236999999999999999999999999999999999999999999999999998876544 688
Q ss_pred ccEEEccCCCc-CCccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVL-FNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~l-f~~TIreNi~~g~~-~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
.++|+||++.+ ++.|++||+.++.. ...++ +++.++++..++.++..+. ...||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHH
Confidence 99999999987 46799999988521 01222 2456677777776655443 36799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE 587 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive 587 (616)
|||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999998874 47899999999999865 89999999999864
No 205
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.8e-45 Score=378.95 Aligned_cols=213 Identities=22% Similarity=0.421 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 369999999999999999999999999999999999999999999999999976 4567889999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|.+ |++||+.+... ...+ ++++.++++..++.+..+ .....||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHH
Confidence 99999999976 99999986321 0112 345666677766655433 3346899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++ .||+|++|++|++++.|+.+++.+.
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999877899999999999875 5999999999999999999998764
No 206
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-45 Score=367.79 Aligned_cols=215 Identities=26% Similarity=0.413 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~ 447 (616)
.|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4889999999964 36999999999999999999999999999999999999999999999999998877644 5788
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCC--CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDG--KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~--~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
++|+||++.+|. .|++||+.++... ..+. +++.+.++..+ ++.........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFH-----------IEHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcC-----------CHHHhhcchhhCCHHHHHHHHH
Confidence 999999999987 4999999875310 1122 22333444433 3334455567899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||++++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998765 478999999999765 56999999999999999999998753
No 207
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-45 Score=373.76 Aligned_cols=220 Identities=30% Similarity=0.517 Sum_probs=189.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~ 440 (616)
..|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45899999999964 369999999999999999999999999999999999997 689999999999864 35
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCC----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
...+|+.++|+||++.+|+.|++||+.++.. ....+++++++++..++...+.. .+......|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 6678899999999999999999999987521 01124567788888877544321 234556789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEE-EEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVA-VVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Ii-vl~~G~Ive~G~~~eL 594 (616)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877789999999999976 499975 5799999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 754
No 208
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=371.73 Aligned_cols=219 Identities=31% Similarity=0.516 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~~~ 441 (616)
.++++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3699999999999999999999999999999999999974 69999999999853 456
Q ss_pred HHHhcccEEEccCCCcCC-ccHHHHHhcCCC--CC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 442 EHLHRKISIVSQEPVLFN-CSIEENIAYGCD--GK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~--~~----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
..+|+.++|++|++.+|. .|++||+.++.. .. ..++++.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999987521 01 11234566777777654332 22344567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEe------CCEEEE
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVS------DGEIVE 587 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~------~G~Ive 587 (616)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 999999999999999999999999999999999999999887779999999999987 5699999996 899999
Q ss_pred ecChhHHhhc
Q 007152 588 SGTHEELLSK 597 (616)
Q Consensus 588 ~G~~~eL~~~ 597 (616)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998764
No 209
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3e-45 Score=363.47 Aligned_cols=210 Identities=35% Similarity=0.510 Sum_probs=174.2
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH---HHHh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH---EHLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~---~~~r 445 (616)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999999999999999999999999999988774 5788
Q ss_pred cccEEEccCC--CcC-CccHHHHHhcCCC---CCCCHHHH----HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 446 RKISIVSQEP--VLF-NCSIEENIAYGCD---GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 446 ~~i~~v~Q~~--~lf-~~TIreNi~~g~~---~~~~~~~i----~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
+.++|++|++ .++ ..|++||+.++.. ....+++. .++++..++. +........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 8999999999 344 5799999986421 01112221 2344444442 1233445578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998764 789999999999887 69999999999998765
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-45 Score=371.27 Aligned_cols=219 Identities=32% Similarity=0.528 Sum_probs=189.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~~~ 441 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 6899999999963 3699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-----CCCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-----GKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-----~~~~-~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+++.++|+||++.+|+.|++||+.++.. .+.+ ++.+.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987521 0111 2346678888887655432 23445678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEe-----CCEEEEec
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS-----DGEIVESG 589 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~-----~G~Ive~G 589 (616)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999998877799999999999875 599999997 59999999
Q ss_pred ChhHHhhc
Q 007152 590 THEELLSK 597 (616)
Q Consensus 590 ~~~eL~~~ 597 (616)
+.+|+.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998754
No 211
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-45 Score=361.07 Aligned_cols=202 Identities=26% Similarity=0.443 Sum_probs=173.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ +++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 369999999999999999999999999999999999999999999999988753 5678999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|.+ |++||+.++.. ... .++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999987521 011 1334566666666655443 3446799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4789999999999875 59999999999998764
No 212
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.3e-45 Score=362.23 Aligned_cols=202 Identities=36% Similarity=0.546 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhcc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~--~~~~~~r~~ 447 (616)
|+++||+++|++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 369999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
++|+||++.+|. .|++||+.++.. ...+ ++++.++++..++.+.+.+. ..+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHH
Confidence 999999999986 699999987531 0122 23455666666665554443 36899999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 585 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~I 585 (616)
|||++++|+++||||||++||+++.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 4789999999999985 5999999999975
No 213
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=373.70 Aligned_cols=220 Identities=31% Similarity=0.473 Sum_probs=186.9
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCCC--C
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEI--S 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~~--~ 440 (616)
..|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999964 359999999999999999999999999999999999864 4999999999998653 3
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~-~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
...+|+.++|++|++.+|+.|++||+.++.. ... + ++++.++++..++.+.+. + ........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---D----RLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---h----HhhCChhhCCHHH
Confidence 3467889999999999999999999998531 011 1 234566777766643321 1 2234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
|||++|||||+.+|+++||||||++||+++.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999975 599999999999999999999
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9765
No 214
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.8e-45 Score=369.28 Aligned_cols=227 Identities=26% Similarity=0.399 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCC-----C
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEI-----S 440 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~-----~ 440 (616)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... .
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999964 36999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcccEEEccCCCcCC-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 007152 441 HEHLHRKISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGER 506 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~ 506 (616)
...+++.++|+||++.+|. .|++||+.++... ...++++.++++..++.+..+. .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999887 5999999876310 0123456778887777665443 3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCC
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDG 583 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G 583 (616)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+ +.||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 45799999999999999999999999999999999999999999999875 378999999999975 679999999999
Q ss_pred EEEEecChhHHhhcCChhHHHHHHHhcC
Q 007152 584 EIVESGTHEELLSKGGVYTALVKRQLQE 611 (616)
Q Consensus 584 ~Ive~G~~~eL~~~~~~y~~l~~~~~~~ 611 (616)
++++.|+++++ ......++|.....+
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~~~~ 255 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSINRV 255 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhhhcc
Confidence 99999999997 334567777655443
No 215
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.5e-45 Score=367.55 Aligned_cols=214 Identities=26% Similarity=0.411 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-hc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-HR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~-r~ 446 (616)
|+++||+++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.++..++.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999974 3699999999999999999999999999999999999 47999999999999998887665 44
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCCCC--C------CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGCDG--K------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~~~--~------~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
.++|+||++.+|++ |++||+.+.... . .+ ++++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 59999999999875 899999764210 0 11 23456666666654211 111111 259999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecC
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGT 590 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~--aD~Iivl~~G~Ive~G~ 590 (616)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999875 79999999999999999
Q ss_pred hhHHh
Q 007152 591 HEELL 595 (616)
Q Consensus 591 ~~eL~ 595 (616)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
No 216
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.3e-45 Score=384.76 Aligned_cols=202 Identities=27% Similarity=0.463 Sum_probs=177.6
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCE----eCCCCCHHHHh----cccEEEccCCC
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV----PLVEISHEHLH----RKISIVSQEPV 456 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~----~i~~~~~~~~r----~~i~~v~Q~~~ 456 (616)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++...+...+| ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 36899999999999999999999999999999999999999999999996 67777665543 57999999999
Q ss_pred cCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007152 457 LFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 530 (616)
Q Consensus 457 lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~i 530 (616)
+|+ .|++||+.++... ..+ +++..++++..++.++.+..| .+|||||+||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 7999999986310 111 345678888888877765544 46999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 531 LLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 531 liLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999999999988753 79999999999986 67999999999999999999999865
No 217
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=367.36 Aligned_cols=219 Identities=31% Similarity=0.521 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~~--~~ 441 (616)
.++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 369999999999999999999999999999999999864 4899999999998753 45
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CC-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~-~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+|+.++|+||++.+|+.|++||+.++.. .. .+ ++++.++++.+++.+++..+ +......||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 678899999999999999999999997521 01 12 24467778888887665422 3455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999997655 899999999999999999998
Q ss_pred hhc
Q 007152 595 LSK 597 (616)
Q Consensus 595 ~~~ 597 (616)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 754
No 218
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=369.95 Aligned_cols=221 Identities=34% Similarity=0.507 Sum_probs=190.6
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCC----
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLV---- 437 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~---- 437 (616)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 346999999999974 3699999999999999999999999999999999999975 7999999998874
Q ss_pred CCCHHHHhcccEEEccCCCcCCccHHHHHhcCCC--C----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 438 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD--G----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 438 ~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~--~----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
......+++.++|+||++.+|.+|++||+.++.. . ...++++.++++.+++.+.+ .+........||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV-------KDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh-------hHHHhCCcccCC
Confidence 3345678899999999999999999999987521 0 11235677777777765433 234456677899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
|||+||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999985 699999999999999999
Q ss_pred hhHHhhc
Q 007152 591 HEELLSK 597 (616)
Q Consensus 591 ~~eL~~~ 597 (616)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998753
No 219
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=368.85 Aligned_cols=219 Identities=33% Similarity=0.520 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-----~G~I~idg~~i~~--~~~ 441 (616)
-++++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcccEEEccCCCcCC-ccHHHHHhcCCC-CCC-CHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 442 EHLHRKISIVSQEPVLFN-CSIEENIAYGCD-GKA-SSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~-~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
..+|+.++|++|++.+|. .|++||+.++.. ... .+++ ..+.++..++.+. +++.+++ ...+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT----PATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC----CcccCCHHH
Confidence 678889999999999998 499999987532 011 2332 2333444444332 2233333 356799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999887 599999999999999999999
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+++.
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 9765
No 220
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=367.56 Aligned_cols=220 Identities=30% Similarity=0.425 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCC--CH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEI--SH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~--~~ 441 (616)
.+.+++++++|.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 3699999999999999999999999999999999999987 799999999998643 44
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
..+|+.++|+||++.+|+.|++||+.++... ...++++.++++.+++.+.+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 5778899999999999999999999986320 1123568888988888665532 2345677899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEe--------CCEEEEe
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVS--------DGEIVES 588 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~--------~G~Ive~ 588 (616)
++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+ +.||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 999999999999999999999999999999999999887788999999999976 4699999996 8999999
Q ss_pred cChhHHhhcC
Q 007152 589 GTHEELLSKG 598 (616)
Q Consensus 589 G~~~eL~~~~ 598 (616)
|+++++++..
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999998643
No 221
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=4.1e-45 Score=380.14 Aligned_cols=214 Identities=31% Similarity=0.488 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999974 36999999999999999999999999999999999999999999999999997654 5688899
Q ss_pred EEEccCCCcC-CccHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLF-NCSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf-~~TIreNi~~g~~-~~~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+|+||++.+| ..|++||+.+... ...+.+ ++.++++..++ ++..++.+ .+||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~----~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARV----SDLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCCh----hhCCHHHHHHHHHHH
Confidence 9999999987 5699999986321 012222 23444554444 44445554 469999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++ .||+|++|++|+|++.|+.+++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998875 4899999999999985 5999999999999999999999754
No 222
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=5.5e-45 Score=357.42 Aligned_cols=203 Identities=36% Similarity=0.573 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++||+++|+. .++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEccCCCcCCc-cHHHHHhcCC-CC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGC-DG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~-~~----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||++.+|.+ |++||+.++. +. ..+++++.++++..++.+...+.|. .||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 10 1234568889999999887777663 799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
++++|+++||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 3789999999999875 599999999999999875
No 223
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=374.91 Aligned_cols=220 Identities=31% Similarity=0.528 Sum_probs=189.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-----PIKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-----~~~G~I~idg~~i~~--~~ 440 (616)
..|+++||+++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999974 369999999999999999999999999999999999986 689999999999865 34
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCCC------------------CCCHHHHHHHHHHcCchHHHHcCCCccccc
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDG------------------KASSADIENAAKMANAHDFISNFPEKYQTF 502 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~------------------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~ 502 (616)
...+|+.++|+||++.+|+.|++||+.++... ...++++.++++.+++.+. +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 56788899999999999999999999976310 0113346666776665433 3345
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEE-EEE
Q 007152 503 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTV-AVV 580 (616)
Q Consensus 503 vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~I-ivl 580 (616)
+.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 5667789999999999999999999999999999999999999999999999877789999999999975 59997 567
Q ss_pred eCCEEEEecChhHHhhc
Q 007152 581 SDGEIVESGTHEELLSK 597 (616)
Q Consensus 581 ~~G~Ive~G~~~eL~~~ 597 (616)
++|++++.|+.+++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998754
No 224
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=368.22 Aligned_cols=220 Identities=30% Similarity=0.533 Sum_probs=189.5
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-----KGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-----~G~I~idg~~i~~--~~ 440 (616)
+.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999964 25999999999999999999999999999999999999985 8999999999853 34
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCC-----CCCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCD-----GKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-----~~~~-~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
...+|+.++|++|++.+|+.|++||+.++.. ...+ ++++.++++..++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 5678899999999999999999999987521 0111 2446777888877655442 2345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeC-----CEEE
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD-----GEIV 586 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~-----G~Iv 586 (616)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998864 4899999999999875 5999999999 9999
Q ss_pred EecChhHHhhc
Q 007152 587 ESGTHEELLSK 597 (616)
Q Consensus 587 e~G~~~eL~~~ 597 (616)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999764
No 225
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=377.99 Aligned_cols=227 Identities=25% Similarity=0.369 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCC-CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCCEEEECCEeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD----PIKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~----~~~G~I~idg~~i~~~~~~~ 443 (616)
-++++|++++|+.... .++|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975311 369999999999999999999999999999999999998 48999999999999998776
Q ss_pred Hhc----ccEEEccCCC--cCC-ccHHHHH----hcCC--CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 444 LHR----KISIVSQEPV--LFN-CSIEENI----AYGC--DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 444 ~r~----~i~~v~Q~~~--lf~-~TIreNi----~~g~--~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+++ .|+||||+|. +++ -|+.+|+ .... .....++++.++++.+++.+... ........|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhC
Confidence 654 6999999995 333 3565554 3321 10112455788888888864321 123445689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEE
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVE 587 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive 587 (616)
|||||||++|||||+.+|++||+|||||+||+.+...+++.|+++.+ +.|+|+|||+++.+ +.||+|++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 78999999999988 5699999999999999
Q ss_pred ecChhHHhhcC-ChhHH
Q 007152 588 SGTHEELLSKG-GVYTA 603 (616)
Q Consensus 588 ~G~~~eL~~~~-~~y~~ 603 (616)
.|+.+++.++. ..|.+
T Consensus 235 ~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred ECCHHHHhhCCCChHHH
Confidence 99999998653 34543
No 226
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-45 Score=382.05 Aligned_cols=211 Identities=31% Similarity=0.500 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHHHh
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEHLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~----~~~~~r 445 (616)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999632 23 89999999999999999999999999999999999999999999998653 245568
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
+.++||+|++.+|+ .|++||+.++.. ..+++++.++++..++.++.++.| .+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 89999999999996 699999999754 345677889999998877766655 57999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++++..+.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999988753 68999999999876 559999999999999999999998754
No 227
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-45 Score=367.74 Aligned_cols=213 Identities=31% Similarity=0.441 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC--------CCEEEECCEeCCCCCH
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI--------KGKILLNGVPLVEISH 441 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~--------~G~I~idg~~i~~~~~ 441 (616)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 36999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcccEEEccCCC-cCCccHHHHHhcCCCCC------C---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 442 EHLHRKISIVSQEPV-LFNCSIEENIAYGCDGK------A---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~-lf~~TIreNi~~g~~~~------~---~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
..+++.++|+||++. +|+.|++||+.++.... . ++++++++++..++.+. ++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 888889999999986 57889999998863101 1 12345666666665433 444567899
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEE
Q 007152 512 GGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAV 579 (616)
Q Consensus 512 GGQrQRlalARAll---------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iiv 579 (616)
||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 789999999999885 6999999
Q ss_pred EeCCEEEEecChhHHhh
Q 007152 580 VSDGEIVESGTHEELLS 596 (616)
Q Consensus 580 l~~G~Ive~G~~~eL~~ 596 (616)
|++|+|++.|+.+++++
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
No 228
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=8.1e-45 Score=377.09 Aligned_cols=230 Identities=24% Similarity=0.400 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHH
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~~~~~~ 444 (616)
-++++|++++|+... ..++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996321 246899999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----cccEEEccCC--CcCC-ccHHHHHhcCCC--CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 445 H----RKISIVSQEP--VLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 445 r----~~i~~v~Q~~--~lf~-~TIreNi~~g~~--~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
+ +.|+||||+| .++. -|+.+|+..... ...+. +++.++++.+++ |++.+ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 4 4799999998 3544 578887753210 01232 234455555544 43332 2456678899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEe
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 588 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~ 588 (616)
||||||++|||||+.+|+++|+|||||+||..+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 6999999999999999
Q ss_pred cChhHHhhc-CChhHH-HHH
Q 007152 589 GTHEELLSK-GGVYTA-LVK 606 (616)
Q Consensus 589 G~~~eL~~~-~~~y~~-l~~ 606 (616)
|+.+++.+. ...|.+ ++.
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 999999874 333554 443
No 229
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-45 Score=361.39 Aligned_cols=211 Identities=36% Similarity=0.592 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 37999999999999999999999999999999999999999999999999987654 368899
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCCC-C----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDGK-A----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~~-~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|++|++.+|. .|++||+.++.... . .++++.++++..++.+++.+.| ..|||||+||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999995 79999999753211 1 2345677888888877766554 5799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
++++|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.++ .||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998753 799999999999876 5999999999999999999998765
No 230
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-45 Score=365.58 Aligned_cols=227 Identities=29% Similarity=0.473 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC------EeCCCCCHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG------VPLVEISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg------~~i~~~~~~ 442 (616)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999974 3699999999999999999999999999999999999999996666554 677777788
Q ss_pred HHhcccEEEccCCCcCCc-cHHHHHhcCCCC-CC-CH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 443 HLHRKISIVSQEPVLFNC-SIEENIAYGCDG-KA-SS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~-TIreNi~~g~~~-~~-~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
.+|+.++|+||++.+|.+ |++||+.++... .. ++ +++.++++..++.+++. .........||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 899999999999999975 999999976321 11 22 23566777777754431 123445678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+++.+.+.|.++.+++|+|+|||+++.+ +.||++++|++|++++.|+++|+
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999998 56999999999999999999999
Q ss_pred hhcCC-hhHHHH
Q 007152 595 LSKGG-VYTALV 605 (616)
Q Consensus 595 ~~~~~-~y~~l~ 605 (616)
.+... .|.+.|
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 86532 355443
No 231
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.2e-45 Score=375.88 Aligned_cols=201 Identities=25% Similarity=0.428 Sum_probs=175.5
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIE 463 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIr 463 (616)
.++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999976 456778899999999999876 999
Q ss_pred HHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC
Q 007152 464 ENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 538 (616)
Q Consensus 464 eNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS 538 (616)
||+.+... ...+ ++++.++++..++.+..+. ...+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR-----------PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC-----------chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987421 0111 3456777777777554332 235799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 539 ALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 539 aLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998875 4789999999999886 5999999999999999999998764
No 232
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-45 Score=365.41 Aligned_cols=220 Identities=32% Similarity=0.502 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCCEEEECCEeCCC--CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--P---IKGKILLNGVPLVE--ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~--~---~~G~I~idg~~i~~--~~~ 441 (616)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 369999999999999999999999999999999999975 4 59999999999864 345
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCC-CCC-C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~-~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
..+++.++|+||++.+|+.|+++|+.++.. ... . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 577889999999999999999999987521 011 1 23455666666664332 2233455678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999985 5999999999999999999888
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
....
T Consensus 235 ~~~~ 238 (252)
T PRK14255 235 FLNP 238 (252)
T ss_pred hcCC
Confidence 7643
No 233
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=366.90 Aligned_cols=220 Identities=32% Similarity=0.493 Sum_probs=189.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCC--CC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVE--IS 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~--~~ 440 (616)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 3699999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhcccEEEccCCCcCCccHHHHHhcCCCCC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 441 HEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 441 ~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
...+|+.|+|+||++.+|+.|+.||+.++.... ..++++.++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 557789999999999999999999999863100 123456777888877654432 234456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcCEEEEEe---------CCEEE
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVS---------DGEIV 586 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD~Iivl~---------~G~Iv 586 (616)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 9999999999999999999999999999999999999887789999999999987 4699999997 89999
Q ss_pred EecChhHHhhc
Q 007152 587 ESGTHEELLSK 597 (616)
Q Consensus 587 e~G~~~eL~~~ 597 (616)
+.|+.+|+.+.
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998754
No 234
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.4e-44 Score=363.35 Aligned_cols=227 Identities=27% Similarity=0.426 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe-----CCCCCHHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP-----LVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~-----i~~~~~~~ 443 (616)
-|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999999999999999999999999998 87776654
Q ss_pred ----HhcccEEEccCCC--cCC-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 444 ----LHRKISIVSQEPV--LFN-CSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 444 ----~r~~i~~v~Q~~~--lf~-~TIreNi~~g~~--~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
+++.++|+||++. ++. .|+.+|+.+... ...+..+..+. ..++++.++-+ ++.....+..|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT-----AGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH-----HHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 3567999999984 343 588999864210 01111122111 12334443211 134456678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecCh
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~ 591 (616)
|||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 789999999999987 5999999999999999999
Q ss_pred hHHhhcC-ChhHHH
Q 007152 592 EELLSKG-GVYTAL 604 (616)
Q Consensus 592 ~eL~~~~-~~y~~l 604 (616)
+++..+. ..|.+.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (258)
T PRK11701 237 DQVLDDPQHPYTQL 250 (258)
T ss_pred HHHhcCCCCHHHHH
Confidence 9997543 235443
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=375.06 Aligned_cols=225 Identities=24% Similarity=0.369 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCCEEEECCEeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD----PIKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~----~~~G~I~idg~~i~~~~~~~ 443 (616)
-++++|++++|+... ...+++|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2469999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEccCCCc--C-CccHHHHHhcCCC-----C----C--CCHHHHHHHHHHcCchHH---HHcCCCccccc
Q 007152 444 LH----RKISIVSQEPVL--F-NCSIEENIAYGCD-----G----K--ASSADIENAAKMANAHDF---ISNFPEKYQTF 502 (616)
Q Consensus 444 ~r----~~i~~v~Q~~~l--f-~~TIreNi~~g~~-----~----~--~~~~~i~~al~~a~l~~~---i~~Lp~GldT~ 502 (616)
++ +.|+||+|+|.. + ..|+.+|+..... . . ..++++.++++.+++.+. .++.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 53 479999999973 3 3589999964210 0 0 113467888898888642 33333
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEE
Q 007152 503 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAV 579 (616)
Q Consensus 503 vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iiv 579 (616)
..||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++
T Consensus 157 -----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~v 231 (330)
T PRK15093 157 -----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINV 231 (330)
T ss_pred -----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 58999999999999999999999999999999999999999999998763 789999999999985 5999999
Q ss_pred EeCCEEEEecChhHHhhc-CChhHHH
Q 007152 580 VSDGEIVESGTHEELLSK-GGVYTAL 604 (616)
Q Consensus 580 l~~G~Ive~G~~~eL~~~-~~~y~~l 604 (616)
|++|+|+|.|+.+++.+. ...|.+.
T Consensus 232 m~~G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 232 LYCGQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EECCEEEEECCHHHHHhCCCCHHHHH
Confidence 999999999999999865 3456553
No 236
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.4e-44 Score=366.46 Aligned_cols=226 Identities=30% Similarity=0.441 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCC------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-
Q 007152 369 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH- 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~- 441 (616)
-|+++||+|+|++. .++++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999731 02479999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcccEEEccCCC--cC-CccHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHHcCCCcccc-cccCCCCC
Q 007152 442 --EHLHRKISIVSQEPV--LF-NCSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQT-FVGERGVR 509 (616)
Q Consensus 442 --~~~r~~i~~v~Q~~~--lf-~~TIreNi~~g~~--~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT-~vge~G~~ 509 (616)
..+|+.++|++|++. ++ ..|++||+.+... ...+ ++++.++++..+ +++ ........
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~ 151 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD-----------LDDSVLDKRPPQ 151 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcC-----------CChhHhhCCCcc
Confidence 356889999999983 43 4799999865311 0111 123444455444 432 33455678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 586 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv 586 (616)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.++ .||+|++|++|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999988753 789999999999987 59999999999999
Q ss_pred EecChhHHhhcCChhHHHH
Q 007152 587 ESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 587 e~G~~~eL~~~~~~y~~l~ 605 (616)
+.|+++|+......|..-+
T Consensus 232 ~~g~~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 232 ETQPVGDKLTFSSPAGRVL 250 (268)
T ss_pred eeCChhhccCCCCHHHHHH
Confidence 9999999987766665444
No 237
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.6e-44 Score=355.90 Aligned_cols=205 Identities=31% Similarity=0.478 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE---HLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~---~~r 445 (616)
++++|++++|++.. +.++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. .++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 24699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCCC--CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~~--~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+.++|+||++.+|. .|+.||+.++... ..+ ++++.++++..++.++++..| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999997 6999999976320 122 234677777777776666555 57999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
+||||++++|+++||||||++||+++.+.+.+.|+++. .++|+|+|||+++..+.||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999998876 37999999999998889999999999986
No 238
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=361.78 Aligned_cols=203 Identities=33% Similarity=0.458 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999964 3699999999999999999999999999999999999999999999999998642 24689
Q ss_pred EEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999987 699999987521 0111 2356777777777655443 346799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEe--CCEEEEecCh
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVS--DGEIVESGTH 591 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~--~G~Ive~G~~ 591 (616)
++++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999998873 4799999999999874 599999998 5999998865
No 239
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=5.2e-44 Score=359.93 Aligned_cols=226 Identities=29% Similarity=0.440 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCCEEEECCEeCCCCCHHHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~----~~G~I~idg~~i~~~~~~~~ 444 (616)
.|+++||+++| + +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 2699999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEccCCC-cCC--ccHHHHHhcC----CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 445 HRKISIVSQEPV-LFN--CSIEENIAYG----CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 r~~i~~v~Q~~~-lf~--~TIreNi~~g----~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++.++||||++. .|. .|+.+|+.+. .. ...++++.++++.+++.+. ++.++.....||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGK-PADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCC-ChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHH
Confidence 467999999985 444 5888887542 11 2345678888888887542 223455567899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 228 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999988743 789999999999875 6999999999999999999999
Q ss_pred hhcC--ChhHHHHHHHh
Q 007152 595 LSKG--GVYTALVKRQL 609 (616)
Q Consensus 595 ~~~~--~~y~~l~~~~~ 609 (616)
.+.. ...+.++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 229 FNAPKHAVTRSLVSAHL 245 (254)
T ss_pred hhCCCCHHHHHHHHhhh
Confidence 7653 23455665554
No 240
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-44 Score=366.23 Aligned_cols=215 Identities=33% Similarity=0.550 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++||+.+|+. ...+|+||||+|++|+.+|++||||||||||+|+|+|+..|++|+|.++|.+...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999973 23699999999999999999999999999999999999999999999999998765 78899999
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
||+||+|.+++. |++||+.|...- ...++++.++++..++.+.- ...-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 999999998864 999999985320 12356789999999887622 2224679999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||+++|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.++. ||+|++|++|+++..|+.+++.+.
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999877 999999999999999999998654
No 241
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.2e-44 Score=358.38 Aligned_cols=206 Identities=28% Similarity=0.457 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHHh
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~---~~~G~I~idg~~i~~~~~~~~r 445 (616)
++|+||+|+|++.+ .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998642 3579999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cccEEEccCCCcCCc-cHHHHHhcCCCC---CC-CHH----HHHH-HHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 446 RKISIVSQEPVLFNC-SIEENIAYGCDG---KA-SSA----DIEN-AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-TIreNi~~g~~~---~~-~~~----~i~~-al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
+.++|+||++.+|++ |++||+.++... .. ..+ ++.+ .++..+ ++.........|||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA-----------LTRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhc-----------chhhhcccccCcCHHHH
Confidence 899999999999987 999999975210 11 111 1111 222222 22223345578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCc--hhhhhcCEEEEEeCCEEEEec
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRL--STVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl--~~l~~aD~Iivl~~G~Ive~G 589 (616)
||++||||++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||++ ...+.||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998875 478999999998 456789999999999999876
No 242
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.3e-44 Score=377.00 Aligned_cols=208 Identities=34% Similarity=0.511 Sum_probs=180.0
Q ss_pred eEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHHhcccE
Q 007152 374 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHLHRKIS 449 (616)
Q Consensus 374 ~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~----~~~~r~~i~ 449 (616)
|++++|++. . + |+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.++
T Consensus 4 ~l~~~~~~~---~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF---S-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE---E-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 799999632 3 5 999999999999999999999999999999999999999999999986543 345688999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCCCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
|++|++.+|.. |++||+.++.. ... ++++.++++..++.++.++.| ..||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGRLP-----------GRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999999975 99999998743 111 234677777777766554443 68999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999999999998753 789999999999875 59999999999999999999998653
No 243
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=6.6e-44 Score=352.38 Aligned_cols=206 Identities=27% Similarity=0.435 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999875322 35799
Q ss_pred EEccCCCcCC-ccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+||++.+|. .|++||+.++.. ...+++++.++++..++.+..+.- ...|||||+||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 699999986431 123466788888888887664432 357999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhH
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 593 (616)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 478999999999987 5699999999999999998765
No 244
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-44 Score=338.13 Aligned_cols=171 Identities=54% Similarity=0.895 Sum_probs=162.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. +.++++|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~~~~~~~~~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EEcCCchhccchHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998877899999999999998899999999985
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-44 Score=339.26 Aligned_cols=170 Identities=35% Similarity=0.607 Sum_probs=158.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999974 36999999999999999999999999999999999999999999999999998766 67788999
Q ss_pred EEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
|+||++.+|.+ |++||+. ||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p 114 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDP 114 (173)
T ss_pred EEecCCccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCC
Confidence 99999999886 9999984 9999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 585 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~I 585 (616)
+++||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 115 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 115 ELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999875 4689999999999887 6999999999974
No 246
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-44 Score=340.93 Aligned_cols=172 Identities=44% Similarity=0.667 Sum_probs=160.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC--HHHHhcc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS--HEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~--~~~~r~~ 447 (616)
|+++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 36999999999999999999999999999999999999999999999999998876 6778899
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
++|++|++.+|. .|++||+.+. ||||||||++||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 999999999886 5999999763 99999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCE
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGE 584 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~ 584 (616)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.++ .||+|++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999988764 589999999999987 599999999985
No 247
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.8e-44 Score=345.84 Aligned_cols=191 Identities=24% Similarity=0.368 Sum_probs=164.0
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHH
Q 007152 369 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~-~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~---~~~G~I~idg~~i~~~~~~~~ 444 (616)
.+.++||+|.|+.. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999853 34579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 445 HRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
++.++|++|++.+|. .|++||+.++.. .. ..+....||||||||++||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~---------------------------~~~~~~~LS~Ge~qrl~lara 132 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR--CK---------------------------GNEFVRGISGGERKRVSIAEA 132 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh--hc---------------------------cccchhhCCHHHHHHHHHHHH
Confidence 889999999998887 599999987521 10 122345799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecC-chh-hhhcCEEEEEeCCEEEEec
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHR-LST-VQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHr-l~~-l~~aD~Iivl~~G~Ive~G 589 (616)
++++|+++||||||++||+++++.+.+.|+++.+ +.|+|+++|+ .+. .+.||+|++|++|++++.|
T Consensus 133 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 133 LVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998754 4676766554 455 4679999999999998765
No 248
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=346.82 Aligned_cols=472 Identities=17% Similarity=0.185 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHH----HHHHHHhHHHHHHHHHHHHHHHH
Q 007152 98 FLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGEL----LSRLSEDTQIIKNAATTNLSEAL 173 (616)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l----~~r~~~d~~~i~~~~~~~~~~~~ 173 (616)
+++....+.+..+..|...-+..+....+..-++++.++--. ||.-.+.++. =+|+++|++++-.........++
T Consensus 129 ~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~-yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~ 207 (659)
T KOG0060|consen 129 VLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFT-YYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLL 207 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccce-EEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhh
Confidence 334444455556666776777777777777777777765433 3333232222 37999999999888887777777
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH
Q 007152 174 RNLSTAFIGLGFMFATSWKLTLLALVVVPA-ISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE 252 (616)
Q Consensus 174 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 252 (616)
.+++..+.+..-++...+|++.+.+....+ -.++...+.+.+.+...++++..+++...-.+...|.+.|-.|+.++.+
T Consensus 208 ~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E 287 (659)
T KOG0060|consen 208 KAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVE 287 (659)
T ss_pred ccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchH
Confidence 777776777777777777777766665544 4456677778888888888888888888888899999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHH----HHHHHHHHH
Q 007152 253 ISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLT----ITGSMTPGALTSFIL----YSLTVGSSV 324 (616)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v----~~g~~s~g~l~~~~~----~~~~~~~~~ 324 (616)
..+.....++..+...+...+.-....+.+++-.+..++-.++-+.-. ..+.+|...+...+. ++..+...+
T Consensus 288 ~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f 367 (659)
T KOG0060|consen 288 HQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAF 367 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHH
Confidence 877777777766666655555544444444444443333222222212 234677777766543 344455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--------------CC-------CCCCCCCCCCCcEEEEeEEEECCCCC
Q 007152 325 SGLSSLYTVAMKAAGASRRVFQLLDRVSSMP--------------KS-------GNQCPLGDQDGEVELDDVWFAYPSRP 383 (616)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~--------------~~-------~~~~~~~~~~~~I~~~~vsf~Y~~~~ 383 (616)
..+......+.+..+...|+.++.+...+.. +. +......+.+..|+|++|++.=|+.
T Consensus 368 ~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~- 446 (659)
T KOG0060|consen 368 GRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN- 446 (659)
T ss_pred HHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-
Confidence 6677777777777777888877764321110 00 0000111233579999999998864
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHH
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 463 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIr 463 (616)
...+.+|+||+|+.|+.+.|.||||||||+|++.+.|+++..+|.+.--.+.-. +.+-||||.|+.=.||+|
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLR 518 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLR 518 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccchh
Confidence 445678899999999999999999999999999999999999999976332111 459999999999999999
Q ss_pred HHHhcCC------CCCCCHHHHHHHHHHcCchHHHHcCCCccccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEEeCc
Q 007152 464 ENIAYGC------DGKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEA 536 (616)
Q Consensus 464 eNi~~g~------~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg-e~G~~LSGGQrQRlalARAll~~p~iliLDEp 536 (616)
|-+.|-. ...++|+++.+.++.+++.+.++. ..|+|+++- +-...||+||+||||.||-+|++|++-||||+
T Consensus 519 dQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 519 DQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred heeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9999852 124789999999999999988776 478997775 66889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 537 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 537 TSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
|||+|.+-|..+.+.+++. +.|.|-|+||.+.-+.-|.++.|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 9999999999999999886 8999999999999999999999975
No 249
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-43 Score=348.75 Aligned_cols=201 Identities=32% Similarity=0.484 Sum_probs=170.4
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHHHhc
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEHLHR 446 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~----~~~~~r~ 446 (616)
++ ||+++|++. .+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 899999753 34 99999999 99999999999999999999999999999999999998643 2345688
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCCCC---CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCDGK---ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~~~---~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
.++|+||++.+|. .|++||+.++.... ..++++.++++..++.+.. ......||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHH
Confidence 9999999999986 59999998764311 1233456666666654443 3445789999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 789999999999875 69999999999998876
No 250
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.9e-43 Score=354.66 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=178.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe-----CCCCCHHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP-----LVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~-----i~~~~~~~ 443 (616)
.|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.+ +..++..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999988 77776554
Q ss_pred H----hcccEEEccCCC--c-CCccHHHHHhcC-----CCCC-CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 444 L----HRKISIVSQEPV--L-FNCSIEENIAYG-----CDGK-ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 444 ~----r~~i~~v~Q~~~--l-f~~TIreNi~~g-----~~~~-~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
. ++.++|++|++. + +..|+.+|+.+. .... ..++++.+.++..++. ++........|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~----------~~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID----------PTRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC----------hhhhhcCchhc
Confidence 3 467999999985 3 345889998642 1100 1122333444443332 13445567789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEE
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 587 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive 587 (616)
|||||||++||||++++|+++||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+. .||++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 3789999999999987 599999999999999
Q ss_pred ecChhHHhhc
Q 007152 588 SGTHEELLSK 597 (616)
Q Consensus 588 ~G~~~eL~~~ 597 (616)
.|+.+++...
T Consensus 230 ~~~~~~~~~~ 239 (253)
T TIGR02323 230 SGLTDQVLDD 239 (253)
T ss_pred ECCHHHHhcC
Confidence 9999998754
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=359.51 Aligned_cols=210 Identities=29% Similarity=0.448 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r-~~ 447 (616)
.|+++||+++|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 5899999999963 2469999999999999999999999999999999999999999999999998742 233 46
Q ss_pred cEEEccCCCc---CCccHHHHHhcCCC---------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 448 ISIVSQEPVL---FNCSIEENIAYGCD---------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 448 i~~v~Q~~~l---f~~TIreNi~~g~~---------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
++|+||++.+ +..++++|+.++.. ...+++++.++++..++.++.+. .+ ..||||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~----~~LSgG~~ 148 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR-------QI----GELSGGQK 148 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcC-------Cc----ccCCHHHH
Confidence 9999999865 45689999876421 01123456778888888765433 22 46999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 593 (616)
||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+++++ +|++++.|++++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999998875 478999999999876 569999777 899999999999
Q ss_pred Hhh
Q 007152 594 LLS 596 (616)
Q Consensus 594 L~~ 596 (616)
+.+
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-43 Score=352.76 Aligned_cols=208 Identities=31% Similarity=0.453 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-++++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999974 3699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEccCCCcCC---ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 449 SIVSQEPVLFN---CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 449 ~~v~Q~~~lf~---~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
+|+||++.++. .|+++|+.+. + ..+++++.++++..++.++++.. ...||||||||++||||++
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qrv~laral~ 136 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDAP-----------MQKLSGGETQRVLLARALL 136 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 99999998765 4899998764 2 34677899999999988776543 3679999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcCChhH
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGGVYT 602 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~ 602 (616)
++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++ +|++.|+++|+.+ .+.|.
T Consensus 137 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~ 214 (251)
T PRK09544 137 NRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFI 214 (251)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHH
Confidence 99999999999999999999999999988753 78999999999987 56999999965 7999999999864 45566
Q ss_pred HHH
Q 007152 603 ALV 605 (616)
Q Consensus 603 ~l~ 605 (616)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 665
No 253
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1e-43 Score=346.85 Aligned_cols=195 Identities=28% Similarity=0.429 Sum_probs=167.8
Q ss_pred EEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHHhcc
Q 007152 372 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHLHRK 447 (616)
Q Consensus 372 ~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~----~~~r~~ 447 (616)
++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999974 369999999999999999999999999999999999999999999999999765542 246778
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~-----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
++|++|++.+|+ .|++||+.++.. ....++++.++++..++.++.++. ..+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-----------IYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-----------hhhCCHHHHHHHHHH
Confidence 999999999997 699999988531 011245577788888776554332 357999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
|||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++.||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999998875 478999999999998999999875
No 254
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.7e-43 Score=353.75 Aligned_cols=213 Identities=25% Similarity=0.455 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..++...+++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999974 3699999999999999999999999999999999998 6899999999999999888777665
Q ss_pred -ccEEEccCCCcCCc-cHHHHHhcCCCC--------CCC----HHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCC
Q 007152 447 -KISIVSQEPVLFNC-SIEENIAYGCDG--------KAS----SADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 447 -~i~~v~Q~~~lf~~-TIreNi~~g~~~--------~~~----~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LS 511 (616)
.++|++|++.+|++ |+++|+.++... +.+ .+++.++++..++.+ ... ..++ ..||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~---~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-------RNVN---EGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhc-------cccc---cCCC
Confidence 48999999999975 899998764210 011 133556666666642 222 2222 2499
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEe
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVES 588 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~--aD~Iivl~~G~Ive~ 588 (616)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999998875 899999999999999
Q ss_pred cChhHH
Q 007152 589 GTHEEL 594 (616)
Q Consensus 589 G~~~eL 594 (616)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
No 255
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-43 Score=340.88 Aligned_cols=183 Identities=31% Similarity=0.519 Sum_probs=163.2
Q ss_pred cEEEEeEEEECCCC---CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCCEEEECCEeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSR---PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~---~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~--~~~~G~I~idg~~i~~~~~~~ 443 (616)
.|+++||+|+|++. .+.++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999742 0247999999999999999999999999999999999999 9999999999998874 36
Q ss_pred HhcccEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 444 LHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+++.++|+||++.+|. .|++||+.++.. .. .||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--~~---------------------------------~LS~G~~qrv~lar 124 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK--LR---------------------------------GLSGGERKRVSIAL 124 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH--hc---------------------------------cCCHHHHHHHHHHH
Confidence 7889999999999887 499999976421 00 79999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCch-hh-hhcCEEEEEeCCEEEEec
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TV-QSADTVAVVSDGEIVESG 589 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~-~l-~~aD~Iivl~~G~Ive~G 589 (616)
|++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+ +.||++++|++|++++.|
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998875 4899999999996 34 569999999999998764
No 256
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-43 Score=341.23 Aligned_cols=182 Identities=28% Similarity=0.459 Sum_probs=162.3
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCCEEEECCEeCCCCCHHHHh
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLNGVPLVEISHEHLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~--~~~~G~I~idg~~i~~~~~~~~r 445 (616)
.|+++|++|+|++.. ++++|+|+||++++|++++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 246999999999999999999999999999999999986 489999999999885 5678
Q ss_pred cccEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 446 RKISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
+.++|++|++.+|.+ |++||+.++.. ++ .||||||||++||||+
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~~------------------------~LSgGe~qrv~la~al 123 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-----------LR------------------------GLSVEQRKRLTIGVEL 123 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-----------Hh------------------------cCCHHHhHHHHHHHHH
Confidence 899999999998875 99999987410 00 7999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh--hhhcCEEEEEeC-CEEEEec
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD-GEIVESG 589 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~--l~~aD~Iivl~~-G~Ive~G 589 (616)
+++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++. .+.||+|++|++ |++++.|
T Consensus 124 ~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 124 AAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999998875 47899999999983 577999999999 9999865
No 257
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.5e-43 Score=354.23 Aligned_cols=214 Identities=27% Similarity=0.419 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHHh-c
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHLH-R 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~r-~ 446 (616)
|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+||.++..+++...+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 3699999999999999999999999999999999999 479999999999999888876665 5
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcC-------CCCC-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYG-------CDGK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g-------~~~~-~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
.++|++|++.++.. |..+++.+. .... .+ ++.+.+.++.. .+|+++.+... ...||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHH
Confidence 79999999987764 544544321 1100 01 11122223322 24444433322 1369999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhhh--cCEEEEEeCCEEEEecC
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGT 590 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~~--aD~Iivl~~G~Ive~G~ 590 (616)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. +|+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999988754 6899999999999887 89999999999999999
Q ss_pred hhHHh
Q 007152 591 HEELL 595 (616)
Q Consensus 591 ~~eL~ 595 (616)
+++..
T Consensus 230 ~~~~~ 234 (248)
T PRK09580 230 FTLVK 234 (248)
T ss_pred HHHHH
Confidence 98653
No 258
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.5e-43 Score=330.94 Aligned_cols=222 Identities=29% Similarity=0.473 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~ 447 (616)
-++++||+..|.. .++|++|||++++||+++++|+||+|||||+|+|+|+.+|.+|+|.++|.|+...++... |.-
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 369999999999999999999999999999999999999999999999999999987665 566
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|+||||.-.+|.. ||.||+.+|.. ...+++-. ...+++..+-+|. +.......+.+|||||+|-+||||||..
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~~----~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKEAQ----ERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-cccccccc----cccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 9999999999975 99999999843 11111111 1113334444553 5566677889999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchh-hhhcCEEEEEeCCEEEEecChhHHhhcCC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSKGG 599 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~~~~ 599 (616)
+|++|+|||||.+|-|.--+.|.+.|+++.+ +.|+++|-++... ++.|||.+||++|+|+.+|+-+||.+...
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999999999874 5699999999986 57899999999999999999999987643
No 259
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.1e-43 Score=330.64 Aligned_cols=164 Identities=32% Similarity=0.503 Sum_probs=151.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++. +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 5789999999642 46999999999999999999999999999999999999999999999883 5899
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|++|++.+++.|++||+.++ ....||||||||++||||++++|+
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~ 111 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPK 111 (166)
T ss_pred EECCCCccccccHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999763 246899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
++||||||++||+++.+.+.+.++++ ++|+|++||+++..+.||+|++|++|-
T Consensus 112 ~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 112 FVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 99999999999999999999999886 589999999999989999999998763
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.9e-43 Score=339.87 Aligned_cols=185 Identities=32% Similarity=0.536 Sum_probs=163.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-hc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-HR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~-r~ 446 (616)
++++|++++|++ .++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 3699999999999999999999999999999999999 58999999999999998887655 55
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
.++|+||++.+|++ |+++|+ ... ...||||||||++||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l--------------------------~~~-----------~~~LS~G~~qrv~laral~ 120 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL--------------------------RYV-----------NEGFSGGEKKRNEILQLLL 120 (200)
T ss_pred cEEEeecChhhccCccHHHHH--------------------------hhc-----------cccCCHHHHHHHHHHHHHh
Confidence 69999999999875 444444 000 1479999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh--hcCEEEEEeCCEEEEecChhHHh
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ--SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~--~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.| ..|+.
T Consensus 121 ~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999999875 4789999999999988 69999999999999999 44454
No 261
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.9e-43 Score=336.39 Aligned_cols=172 Identities=27% Similarity=0.504 Sum_probs=157.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.|+++|++++| +++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++. ..+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 7999999999999999999999999999999999999999999999999988874 456889
Q ss_pred cEEEccCC----CcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 448 ISIVSQEP----VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 448 i~~v~Q~~----~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
++|++|++ .+++.|++||+.++.. ||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL--------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh--------------------------------------cCHHHHHHHHHHHH
Confidence 99999995 3445799999987521 99999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 585 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~I 585 (616)
++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999875 47899999999988765 999999999974
No 262
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.3e-43 Score=335.37 Aligned_cols=177 Identities=36% Similarity=0.599 Sum_probs=161.5
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++||+++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||.++..++...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999974 369999999999999999999999999999999999999999999999999999898889999999
Q ss_pred EccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007152 451 VSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 530 (616)
Q Consensus 451 v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~i 530 (616)
++| +++..++.+++.. ....|||||+||++||||++++|++
T Consensus 78 ~~q----------------------------~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~l 118 (180)
T cd03214 78 VPQ----------------------------ALELLGLAHLADR-----------PFNELSGGERQRVLLARALAQEPPI 118 (180)
T ss_pred HHH----------------------------HHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999 6677777766543 3468999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEec
Q 007152 531 LLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESG 589 (616)
Q Consensus 531 liLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G 589 (616)
+||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 119 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 119 LLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999988764 78999999999987 669999999999998754
No 263
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.1e-42 Score=348.69 Aligned_cols=217 Identities=26% Similarity=0.414 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++||++. .+|+|+||+|++|++++|+|+||||||||+++|+|++++ +|+|.+||.++...+...+++.++
T Consensus 1 ~~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~ 72 (248)
T PRK03695 1 MQLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRA 72 (248)
T ss_pred Ccccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheE
Confidence 356788874 179999999999999999999999999999999999864 899999999999888888888999
Q ss_pred EEccCCC-cCCccHHHHHhcCCCCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 450 IVSQEPV-LFNCSIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 450 ~v~Q~~~-lf~~TIreNi~~g~~~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
|+||++. .+..|+++|+.++.+...+ ++++.++++..++.+..+ .....||||||||++||||+
T Consensus 73 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 141 (248)
T PRK03695 73 YLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-----------RSVNQLSGGEWQRVRLAAVV 141 (248)
T ss_pred EecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 9999985 4578999999987431111 234666777766654433 33468999999999999999
Q ss_pred cc-------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 007152 525 MM-------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 525 l~-------~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+. +|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 142 ~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 142 LQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred hccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 97 679999999999999999999999998875 578999999999965 679999999999999999999986
Q ss_pred hcCChhHHHHH
Q 007152 596 SKGGVYTALVK 606 (616)
Q Consensus 596 ~~~~~y~~l~~ 606 (616)
+. ....+.+.
T Consensus 222 ~~-~~~~~~~~ 231 (248)
T PRK03695 222 TP-ENLAQVFG 231 (248)
T ss_pred Cc-hHHHHHhC
Confidence 53 33445543
No 264
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=342.60 Aligned_cols=219 Identities=34% Similarity=0.570 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCC---------------------CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 369 EVELDDVWFAYPSRPN---------------------HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~---------------------~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
.|+++||+.-+..++. .--++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5788888776643211 1237899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHh----cccEEEccCCCcCC-ccHHHHHhcCCCC----C-CCHHHHHHHHHHcCchHHHHcCCC
Q 007152 428 KILLNGVPLVEISHEHLH----RKISIVSQEPVLFN-CSIEENIAYGCDG----K-ASSADIENAAKMANAHDFISNFPE 497 (616)
Q Consensus 428 ~I~idg~~i~~~~~~~~r----~~i~~v~Q~~~lf~-~TIreNi~~g~~~----~-~~~~~i~~al~~a~l~~~i~~Lp~ 497 (616)
+|++||.|+..++.+++| +.+++|+|+.-||+ -||.||..||-.- . -.+++..++++.+||++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999987764 57999999999985 7999999998531 1 12445788999999999998888
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhc
Q 007152 498 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSA 574 (616)
Q Consensus 498 GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~a 574 (616)
..||||++||+.|||||..+||||++|||+|||||--...+++.|.++. -+||+++|||+|+. ++..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4799999999999999999999999999999999999999999886653 37999999999975 7889
Q ss_pred CEEEEEeCCEEEEecChhHHhhcC
Q 007152 575 DTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 575 D~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|||..|++|+|++.||++|++.+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999999764
No 265
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.4e-42 Score=337.14 Aligned_cols=195 Identities=26% Similarity=0.418 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 36899999999999999999999999999999999999999999999999987543 56788999
Q ss_pred EEccCCCcC-CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
|+||++.++ +.|++||+.+..+ ..+++++.++++..++.++.... ..+||||||||++||||++++|
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRP-----------VAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCc-----------hhhCCHHHHHHHHHHHHHhcCC
Confidence 999999886 5899999998754 34677889999999887654322 3579999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCch-hhhhcCEEEEE
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQSADTVAVV 580 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~-~l~~aD~Iivl 580 (616)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+.. ..+.+|+++++
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999998764 4789999999876 45678998876
No 266
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.9e-42 Score=343.20 Aligned_cols=192 Identities=35% Similarity=0.506 Sum_probs=164.0
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-ccHHHHH
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEENI 466 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~TIreNi 466 (616)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|+||++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5789999999999999999999999999999999999999999999998765542 489999999987 5999999
Q ss_pred hcCCC---CCCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCC
Q 007152 467 AYGCD---GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 539 (616)
Q Consensus 467 ~~g~~---~~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSa 539 (616)
.++.. ...++ +++.++++..++.+..+. ....||||||||++|||||+++|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 87520 02222 235667777777654433 2357999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 540 LDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 540 LD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999999998864 3789999999999865 59999999999999999876653
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2e-42 Score=381.90 Aligned_cols=214 Identities=30% Similarity=0.463 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r-~~ 447 (616)
.|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999964 3699999999999999999999999999999999999999999999999999888776665 46
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCC-CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGK-ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~-~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
++||||++.+|.. |++||+.++.... ..++++.++++..++.++.+ ....+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-----------SSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9999999998875 9999999874311 12345677777777654322 223579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999998874 4789999999999875 599999999999999999988754
No 268
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-42 Score=337.13 Aligned_cols=195 Identities=25% Similarity=0.377 Sum_probs=167.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999964 369999999999999999999999999999999999999999999999998875 3467788999
Q ss_pred EEccCCCcC-CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
|+||++.++ ..|++||+.++.....++.++.++++..++.+.. +..+ ..|||||+||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYPC----GLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCCh----hhcCHHHHHHHHHHHHHhcCC
Confidence 999999986 5799999998631112344567777776664433 2222 369999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEE
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
+++||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+..||.-.+
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999864 57899999999999999997553
No 269
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.4e-42 Score=344.34 Aligned_cols=201 Identities=35% Similarity=0.496 Sum_probs=168.8
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCCEEEECCEeCCCCCHHHHhcccEEEccCCC-cCC--
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHLHRKISIVSQEPV-LFN-- 459 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~----~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~-lf~-- 459 (616)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+||.++... +..++.++|++|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998754 233468999999995 444
Q ss_pred ccHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 007152 460 CSIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 534 (616)
Q Consensus 460 ~TIreNi~~g~-----~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLD 534 (616)
-|+.+|+.+.. +....++++.++++..++.+. ++........||||||||++||||++++|+++|||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 59999986532 101123446777777776521 12334456789999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 535 EATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 535 EpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999998753 789999999999885 6999999999999999999999864
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.4e-43 Score=310.63 Aligned_cols=204 Identities=31% Similarity=0.499 Sum_probs=178.1
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
++++|.|.-. +.++|+++||++.+||+++|.||||||||||+|.++-+.+|++|++++.|.|++.++++.+|++|+|
T Consensus 5 e~kq~~y~a~---~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 5 ELKQVGYLAG---DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred HHHHHHhhcC---CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 3445544332 4579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcCCccHHHHHhcCC---CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 451 VSQEPVLFNCSIEENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 451 v~Q~~~lf~~TIreNi~~g~---~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
+-|.|-||.+||.||+-|-. ....+.+...+.++.+++.+.+ +..+-.+||||||||+||+|-|---
T Consensus 82 ~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~ 151 (223)
T COG4619 82 CAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFM 151 (223)
T ss_pred HHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcC
Confidence 99999999999999998842 1234566666777777665544 4455678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEeCCEEEE
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIVE 587 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~~G~Ive 587 (616)
|+||+|||||||||+.+.+.|.+.|.++. ++..++-|||+.+. +++||+++.+..|++-+
T Consensus 152 P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 152 PKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred CceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 99999999999999999999999998775 57799999999987 99999999999998743
No 271
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-42 Score=335.86 Aligned_cols=196 Identities=20% Similarity=0.333 Sum_probs=170.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999964 36999999999999999999999999999999999999999999999999987654 45778899
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC--CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~--~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|++|++.+++ .|++||+.++.+. ..+++++.++++..++.++.+.. ...||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 6999999886431 13456788899999987665332 35799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEE
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVV 580 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl 580 (616)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 47899999999999855 4677666
No 272
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4e-42 Score=322.13 Aligned_cols=159 Identities=36% Similarity=0.537 Sum_probs=148.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~i 448 (616)
|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +..++.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999974 369999999999999999999999999999999999999999999999999998876 4567789
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+|++| |||||+||++||||++++|
T Consensus 78 ~~~~q--------------------------------------------------------LS~G~~qrl~laral~~~p 101 (163)
T cd03216 78 AMVYQ--------------------------------------------------------LSVGERQMVEIARALARNA 101 (163)
T ss_pred EEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 99999 9999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEE
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 587 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive 587 (616)
+++||||||++||+++.+.+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998874 4789999999999765 599999999999975
No 273
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-42 Score=382.78 Aligned_cols=213 Identities=26% Similarity=0.373 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHH-Hh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEH-LH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i~~~~~~~-~r 445 (616)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCCC----CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCDG----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~~----~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
+.++||||++.+|. .|++||+.++... ..+. +++.++++..++.+. ......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-----------PATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHHHH
Confidence 78999999999886 4999999986320 0122 235555555554322 22334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998874 5789999999999875 5999999999999999998876
Q ss_pred h
Q 007152 595 L 595 (616)
Q Consensus 595 ~ 595 (616)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 4
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=387.27 Aligned_cols=227 Identities=30% Similarity=0.473 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCC--------CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC
Q 007152 369 EVELDDVWFAYPSRP--------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 440 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~ 440 (616)
-++++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 589999999996311 236899999999999999999999999999999999999999999999999998776
Q ss_pred HH---HHhcccEEEccCCC--cCC-ccHHHHHhcCCC--CC----CCHHHHHHHHHHcCch-HHHHcCCCcccccccCCC
Q 007152 441 HE---HLHRKISIVSQEPV--LFN-CSIEENIAYGCD--GK----ASSADIENAAKMANAH-DFISNFPEKYQTFVGERG 507 (616)
Q Consensus 441 ~~---~~r~~i~~v~Q~~~--lf~-~TIreNi~~g~~--~~----~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G 507 (616)
.. .+|+.|+||||+++ ++. -|+.||+.++.. .. ..++++.++++..++. +..+..|
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~----------- 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP----------- 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----------
Confidence 43 46778999999984 665 599999976310 01 1124567788888874 4444443
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGE 584 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~ 584 (616)
..||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 47999999999999999999999999999999999999999999988753 789999999999875 599999999999
Q ss_pred EEEecChhHHhhc-CChhHH-HHH
Q 007152 585 IVESGTHEELLSK-GGVYTA-LVK 606 (616)
Q Consensus 585 Ive~G~~~eL~~~-~~~y~~-l~~ 606 (616)
|++.|+.+++... ...|.+ ++.
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999999764 334543 444
No 275
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.6e-42 Score=364.88 Aligned_cols=229 Identities=34% Similarity=0.524 Sum_probs=191.4
Q ss_pred CcEEEEeEEEECCCC--------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe--CC
Q 007152 368 GEVELDDVWFAYPSR--------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP--LV 437 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~--------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~--i~ 437 (616)
.-++++|++.+|... ....+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 347899999999742 12467999999999999999999999999999999999999999999999977 33
Q ss_pred CCCHHHHhcccEEEccCCCc--C-CccHHHHHhcCCC--CC----CCHHHHHHHHHHcCchH-HHHcCCCcccccccCCC
Q 007152 438 EISHEHLHRKISIVSQEPVL--F-NCSIEENIAYGCD--GK----ASSADIENAAKMANAHD-FISNFPEKYQTFVGERG 507 (616)
Q Consensus 438 ~~~~~~~r~~i~~v~Q~~~l--f-~~TIreNi~~g~~--~~----~~~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G 507 (616)
.-.....|+.+-+|+|||+- - ..||+++|.---. .. ..++++.+.++.+++.+ +..+.|
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP----------- 427 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYP----------- 427 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCc-----------
Confidence 22355678899999999984 2 3699999874311 01 11234777788888875 555555
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGE 584 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~-aD~Iivl~~G~ 584 (616)
..||||||||+||||||..+|+++|+|||||+||+.+.+.|.+-|.++.+ +.|.|+|||+++.++. ||||.||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 57999999999999999999999999999999999999999999987753 6899999999999976 99999999999
Q ss_pred EEEecChhHHhhc-CChhHHHHHH
Q 007152 585 IVESGTHEELLSK-GGVYTALVKR 607 (616)
Q Consensus 585 Ive~G~~~eL~~~-~~~y~~l~~~ 607 (616)
|||.|+.++..++ ...|.+.+..
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999876 5667765543
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=382.15 Aligned_cols=214 Identities=24% Similarity=0.356 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~ 447 (616)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998887655 3567
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCC-----C---CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDG-----K---AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~-----~---~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
++||||++.+|.. |++||+.++... . .+ ++++.++++..++.+. .+.. ..+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~----~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LDEK----VANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cccc----hhhCCHHH
Confidence 9999999998875 999999875310 0 01 1335556666555332 2222 35799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 592 (616)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998875 4789999999999875 59999999999999999988
Q ss_pred HHhh
Q 007152 593 ELLS 596 (616)
Q Consensus 593 eL~~ 596 (616)
++..
T Consensus 231 ~~~~ 234 (510)
T PRK09700 231 DVSN 234 (510)
T ss_pred hCCH
Confidence 7643
No 277
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-43 Score=320.20 Aligned_cols=215 Identities=32% Similarity=0.498 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
+++.++|.+|++ ...+++|+||+++.||.+||.|+|||||||+++.|..++.|++|.|++||.|... .+...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999975 2347999999999999999999999999999999999999999999999999976 4577899999
Q ss_pred EEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+++-+.-|+. -|.||||.|... .+.+ +.++.+..+..++.+.+ |+.+| +||-|+|||++||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv~----~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRVG----EFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHHh----hhchhhHHHHHHHHH
Confidence 9998888886 599999998642 0122 34455555555555553 44454 599999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|.++|+++|||||||+||-.+.+.+.+-|.+++. ++++|+.||-++.++ -||+|+++++|+++..|+.+++.++.
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 9999999999999999999999999999998874 999999999999998 69999999999999999999998753
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.9e-42 Score=342.28 Aligned_cols=193 Identities=26% Similarity=0.463 Sum_probs=160.4
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc-cCCCcC-CccH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS-QEPVLF-NCSI 462 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~TI 462 (616)
+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 356788999997 666776 5799
Q ss_pred HHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcC
Q 007152 463 EENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 537 (616)
Q Consensus 463 reNi~~g~~-~~~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpT 537 (616)
+||+.+... ...+.+ ++.++++..++.+. .++.+ ..||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 012232 23444555554433 33333 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 538 SALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 538 SaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999998753 689999999999875 59999999999998765
No 279
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5.1e-42 Score=378.33 Aligned_cols=213 Identities=28% Similarity=0.379 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~ 447 (616)
-|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 36999999999999999999999999999999999999999999999999997766544 4678
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCC-----CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDG-----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~-----~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++||+|++.+|. -|++||+.++... ..+. +++.++++..++.+.. +. .-.+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-------DK----LVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-------cC----chhhCCHHHHHH
Confidence 999999998886 4999999986320 1122 2345555555553322 22 235799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999999998764 4789999999999875 59999999999999999987764
No 280
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9e-42 Score=375.82 Aligned_cols=212 Identities=24% Similarity=0.318 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3899999999974 2599999999999999999999999999999999999999999999999988777777788889
Q ss_pred EEEccCCCc---------CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 449 SIVSQEPVL---------FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 449 ~~v~Q~~~l---------f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
+|++|++.+ +..|+++|+.++. ..++++.++++..++.+..+..| ..||||||||++
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~ 145 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRF-----------KYLSTGETRKTL 145 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCc-----------ccCCHHHHHHHH
Confidence 999998753 2469999987642 23566888888888866544333 579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++..|+.+++.+.
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999999998875 4789999999999875 5999999999999999999887653
No 281
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.5e-42 Score=331.33 Aligned_cols=194 Identities=25% Similarity=0.370 Sum_probs=165.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999964 36999999999999999999999999999999999999999999999999988765 46778999
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|++|++.+|. .|++||+.+..+. ...++++.++++..++.++.+.. ...||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLP-----------AAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCC-----------hhhcCHHHHHHHHHHHHHhcC
Confidence 9999999886 6999999876321 11244688889998887765332 257999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCchhhhhcCEEEE
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
|+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+.. |+++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-ARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEee
Confidence 9999999999999999999999999886 357899999999865433 55543
No 282
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-41 Score=333.22 Aligned_cols=197 Identities=22% Similarity=0.316 Sum_probs=167.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++|++++|++ +++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 5899999999964 3699999999999999999999999999999999999999999999999998752 345689
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~--~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
+|++|++.+|.+ |++||+.++.. ....++.+.++++..++.+. +++. ...||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDTL----VRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccCC----hhhCCHHHHHHHHHHHHHh
Confidence 999999999886 99999987532 11123445667776665433 2333 3579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeC
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSD 582 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~ 582 (616)
++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+ +.||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 578999999999987 56899999874
No 283
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-42 Score=376.83 Aligned_cols=208 Identities=27% Similarity=0.368 Sum_probs=176.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
-|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976553 456889
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCC---C-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDG---K-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~---~-~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
++||||++.+|.. |++||+.++... . .+ ++++.++++..++.+. ......+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHHHHH
Confidence 9999999998875 999999986310 0 11 2345556666555322 1223457999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999998874 4789999999999875 599999999999987765
No 284
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.4e-41 Score=331.50 Aligned_cols=195 Identities=26% Similarity=0.387 Sum_probs=169.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. . .+|+.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999964 369999999999999999999999999999999999999999999999998753 2 2788999
Q ss_pred EEccCCCcC-CccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|++|++.++ +.|++||+.+... ....++++.++++..++.++.+ .| ...||||||||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~----------~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LP----------FGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CC----------hhhcCHHHHHHHHHHHHHhcC
Confidence 999988775 6799999987532 1234566888999999876533 22 247999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998753 57899999999999998 99988854
No 285
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-41 Score=336.01 Aligned_cols=226 Identities=33% Similarity=0.580 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-C----CCCEEEECCEeCCCCCHHH
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-P----IKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-~----~~G~I~idg~~i~~~~~~~ 443 (616)
++++|++.+|+... ...+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999886431 2468999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred H---h-cccEEEccCCCc-CCc--cHH----HHHhcCCCC---CCCHHHHHHHHHHcCchH---HHHcCCCcccccccCC
Q 007152 444 L---H-RKISIVSQEPVL-FNC--SIE----ENIAYGCDG---KASSADIENAAKMANAHD---FISNFPEKYQTFVGER 506 (616)
Q Consensus 444 ~---r-~~i~~v~Q~~~l-f~~--TIr----eNi~~g~~~---~~~~~~i~~al~~a~l~~---~i~~Lp~GldT~vge~ 506 (616)
+ | +.|++|||||.- ||- ||. |-+...... ..-.++..++++.+++.+ .+++.|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 4 3 479999999862 432 444 444332110 001346788899999875 456666
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCC
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDG 583 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G 583 (616)
..||||||||+.||-|+..+|++||-||||+|||..+.+.|++-|+++. .+.|+|+|||++..+ +.||+|+||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 5799999999999999999999999999999999999999999998876 488999999999976 569999999999
Q ss_pred EEEEecChhHHhhcCC-hhH-HHHH
Q 007152 584 EIVESGTHEELLSKGG-VYT-ALVK 606 (616)
Q Consensus 584 ~Ive~G~~~eL~~~~~-~y~-~l~~ 606 (616)
+|||.|+.+|+.++.. .|. .|++
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999997632 344 3443
No 286
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=374.53 Aligned_cols=210 Identities=25% Similarity=0.340 Sum_probs=176.3
Q ss_pred EEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcccEE
Q 007152 372 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRKISI 450 (616)
Q Consensus 372 ~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~i~~ 450 (616)
++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 369999999999999999999999999999999999999999999999999976654 456788999
Q ss_pred EccCCCcCC-ccHHHHHhcCCCC--C--CCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 451 VSQEPVLFN-CSIEENIAYGCDG--K--ASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 451 v~Q~~~lf~-~TIreNi~~g~~~--~--~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
|||++.+|. .|++||+.++... . .+.+ ++.++++..++ +........+||||||||++||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI-----------DIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCC-----------CCCccCchhhCCHHHHHHHHHH
Confidence 999998775 5999999986320 1 1222 23344444433 3233344568999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999999998864 5789999999999875 59999999999999999987763
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.1e-41 Score=378.07 Aligned_cols=217 Identities=30% Similarity=0.508 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCC--------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC
Q 007152 369 EVELDDVWFAYPSR--------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS 440 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~ 440 (616)
-|+++|++++|+.. .+.++|+|+||+|++|+++||+|+||||||||+++|+|++ |++|+|+++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1246999999999999999999999999999999999998 58999999999998776
Q ss_pred HHH---HhcccEEEccCC--CcCC-ccHHHHHhcCCC---CCC----CHHHHHHHHHHcCch-HHHHcCCCcccccccCC
Q 007152 441 HEH---LHRKISIVSQEP--VLFN-CSIEENIAYGCD---GKA----SSADIENAAKMANAH-DFISNFPEKYQTFVGER 506 (616)
Q Consensus 441 ~~~---~r~~i~~v~Q~~--~lf~-~TIreNi~~g~~---~~~----~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~ 506 (616)
... +|+.++||||++ .+|. .|++||+.++.. ... .++++.++++..++. +.....
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----------- 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY----------- 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC-----------
Confidence 543 477899999998 3665 599999987521 001 123466677777764 233332
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCC
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDG 583 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G 583 (616)
..+||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 357999999999999999999999999999999999999999999998753 789999999999875 59999999999
Q ss_pred EEEEecChhHHhhc
Q 007152 584 EIVESGTHEELLSK 597 (616)
Q Consensus 584 ~Ive~G~~~eL~~~ 597 (616)
+|++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999999764
No 288
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.5e-41 Score=375.23 Aligned_cols=221 Identities=30% Similarity=0.447 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCCHH
Q 007152 369 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~-~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~~~~ 442 (616)
-|+++||+++|++. ...++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124799999999999999999999999999999999999987 799999999999887654
Q ss_pred H---Hh-cccEEEccCCC--cCC-ccHHHHHhcC------CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 443 H---LH-RKISIVSQEPV--LFN-CSIEENIAYG------CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 443 ~---~r-~~i~~v~Q~~~--lf~-~TIreNi~~g------~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
+ +| +.++||||++. ++. .|+++|+.+. .+....++++.++++..++.+.... ......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~--------~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR--------LTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhhCCcc
Confidence 3 34 57999999985 443 5999998642 1101123457778888877542110 1122357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 586 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv 586 (616)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998874 3789999999999875 59999999999999
Q ss_pred EecChhHHhhc
Q 007152 587 ESGTHEELLSK 597 (616)
Q Consensus 587 e~G~~~eL~~~ 597 (616)
+.|+.+++.+.
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 289
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=381.74 Aligned_cols=221 Identities=29% Similarity=0.416 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC----------
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV---------- 437 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~---------- 437 (616)
-|+++|++++|+... +.++|+||||++++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cccEEEccCC--CcCC-ccHHHHHhcCCCC--CCC----HHHHHHHHHHcCchHHHHcCCCccccccc
Q 007152 438 EISHE---HLH-RKISIVSQEP--VLFN-CSIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVG 504 (616)
Q Consensus 438 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~TIreNi~~g~~~--~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vg 504 (616)
+.+.. .+| +.|+||+|+| .++. -|++||+.++... ..+ ++++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 5799999998 5776 5999999875210 112 2456667777776321 01122
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEecCchhh-hhcCEEEEEe
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-K-GRTVLVIAHRLSTV-QSADTVAVVS 581 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~-~~T~I~ItHrl~~l-~~aD~Iivl~ 581 (616)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. + ++|+|+|||+++.+ +.||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 2345799999999999999999999999999999999999999999999875 3 78999999999987 5599999999
Q ss_pred CCEEEEecChhHHhhc
Q 007152 582 DGEIVESGTHEELLSK 597 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~ 597 (616)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998753
No 290
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-41 Score=340.81 Aligned_cols=215 Identities=25% Similarity=0.374 Sum_probs=175.3
Q ss_pred cEEEEeEEEECCCC-----------------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEE
Q 007152 369 EVELDDVWFAYPSR-----------------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL 431 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~-----------------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~i 431 (616)
+|+++||+.+|... ...++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57788887666421 1346899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcccEEEccCCCcCC-ccHHHHHhcCCC-CCCCHHHH----HHHHHHcCchHHHHcCCCcccccccC
Q 007152 432 NGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEENIAYGCD-GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGE 505 (616)
Q Consensus 432 dg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~~~~i----~~al~~a~l~~~i~~Lp~GldT~vge 505 (616)
+|. +++++|++.+++ .|++||+.++.. ...+.++. .++++..++.+++ ..
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~ 139 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQ 139 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cC
Confidence 993 567888887764 699999986421 02233333 3445555555443 33
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCC
Q 007152 506 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDG 583 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G 583 (616)
....||||||||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+. .||+|++|++|
T Consensus 140 ~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G 219 (264)
T PRK13546 140 PVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219 (264)
T ss_pred CcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECC
Confidence 456899999999999999999999999999999999999999999998764 5789999999999875 59999999999
Q ss_pred EEEEecChhHHhhcCChhHHHHHH
Q 007152 584 EIVESGTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 584 ~Ive~G~~~eL~~~~~~y~~l~~~ 607 (616)
+|++.|+++++.+....|-+.+..
T Consensus 220 ~i~~~g~~~~~~~~~~~~~~~~~~ 243 (264)
T PRK13546 220 KLKDYGELDDVLPKYEAFLNDFKK 243 (264)
T ss_pred EEEEeCCHHHHHHHhHHHHHHHHh
Confidence 999999999998875555554443
No 291
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.8e-41 Score=379.55 Aligned_cols=201 Identities=29% Similarity=0.481 Sum_probs=173.0
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC--CCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-cc
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI--KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CS 461 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~--~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~T 461 (616)
+++|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||.++. ...+++++||+|++.+|. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 245678999999999996 59
Q ss_pred HHHHHhcCC----CCCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCC-CCCCChhHHHHHHHHHHHccCCCEEE
Q 007152 462 IEENIAYGC----DGKASSAD----IENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQRVAIARALMMNPRILL 532 (616)
Q Consensus 462 IreNi~~g~----~~~~~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~-G~~LSGGQrQRlalARAll~~p~ili 532 (616)
++||+.++. +...++++ +.++++..+ |++..||.+|+. ...||||||||++|||||+++|+|++
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLl 229 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLI 229 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEE
Confidence 999999853 21234433 333444433 344568999864 77899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh--hhhcCEEEEEeCCEEEEecChhHHhh
Q 007152 533 LDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 533 LDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~--l~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|+|++|++|+++..|+++++.+
T Consensus 230 LDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 230 LDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999876 58999999999974 57799999999999999999999864
No 292
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.2e-41 Score=334.66 Aligned_cols=201 Identities=30% Similarity=0.379 Sum_probs=165.0
Q ss_pred EEEEeEEEECCCC---C-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC--CE--eCCCCCH
Q 007152 370 VELDDVWFAYPSR---P-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN--GV--PLVEISH 441 (616)
Q Consensus 370 I~~~~vsf~Y~~~---~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id--g~--~i~~~~~ 441 (616)
|+++|++++|++. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2369999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---H-hcccEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 442 EH---L-HRKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 442 ~~---~-r~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
.. + ++.++|+||++.+|. -|++||+.+... ...+ ++++.++++..++.+.... .....||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWH----------LPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhh----------CCcccCC
Confidence 43 3 467999999999886 499999976311 0122 3455666776666543221 2356799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEE
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVV 580 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl 580 (616)
||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998875 4789999999999885 69999876
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-41 Score=357.30 Aligned_cols=213 Identities=26% Similarity=0.353 Sum_probs=176.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++|+|++...+++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764345799999999999999999999999999999999999999999999999751
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCC-CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~-~~~~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
++++.+.+++ .|++||+.+... ...++++ +.++++.+++.++++.. ...||||||||++|||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKTYSSGMKSRLGFAI 156 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------cccCCHHHHHHHHHHH
Confidence 2333444443 599999987421 0223333 45677777776665443 4679999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcCCh
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGV 600 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~~~ 600 (616)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++...-..
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~ 236 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDE 236 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHH
Confidence 9999999999999999999999999999998874 4789999999999885 4999999999999999999999876555
Q ss_pred hHHHH
Q 007152 601 YTALV 605 (616)
Q Consensus 601 y~~l~ 605 (616)
|.+.+
T Consensus 237 ~~~~~ 241 (549)
T PRK13545 237 FLKKY 241 (549)
T ss_pred HHHHH
Confidence 55544
No 294
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6e-41 Score=378.79 Aligned_cols=216 Identities=31% Similarity=0.452 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH---
Q 007152 369 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL--- 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~--- 444 (616)
.++++|++++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2469999999999999999999999999999999999999999999999999999887764
Q ss_pred -hcccEEEccCCCcCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 445 -HRKISIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 -r~~i~~v~Q~~~lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
|+.++|++|++.+|+ .|+.||+.++... ..+ +++..+.++..++.+.++.. ...|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~-----------~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQ-----------PSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCC-----------cccCCHHHHHH
Confidence 578999999999996 5999999874210 111 23455566666665554443 45899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
++|||||+++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998875 479999999999999999999999999999999999886
No 295
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.4e-41 Score=333.72 Aligned_cols=195 Identities=29% Similarity=0.453 Sum_probs=165.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCc---CCccHHHHHhcC
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL---FNCSIEENIAYG 469 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l---f~~TIreNi~~g 469 (616)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+++++|+||++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 357789999999976 457999999875
Q ss_pred C---------CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCC
Q 007152 470 C---------DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 540 (616)
Q Consensus 470 ~---------~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaL 540 (616)
. +...+++++.++++..++.++.+.. ...||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----------VGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 2 1011234578888888886654332 2469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcCChhHHHH
Q 007152 541 DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 541 D~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
|+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+. ..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-APWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-HHHHHHh
Confidence 9999999999998875 4789999999999775 59999999 7999999999998764 3455554
No 296
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.7e-41 Score=357.14 Aligned_cols=224 Identities=30% Similarity=0.490 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCC-CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC----CCEEEECCEeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI----KGKILLNGVPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~-~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~----~G~I~idg~~i~~~~~~~ 443 (616)
-++++|++..|..... .++++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999864422 25899999999999999999999999999999999999988 899999999999999866
Q ss_pred Hh----cccEEEccCCC-cCCc--cHHHHHhc----CCC--CCCCHHHHHHHHHHcCchHHHHc--CCCcccccccCCCC
Q 007152 444 LH----RKISIVSQEPV-LFNC--SIEENIAY----GCD--GKASSADIENAAKMANAHDFISN--FPEKYQTFVGERGV 508 (616)
Q Consensus 444 ~r----~~i~~v~Q~~~-lf~~--TIreNi~~----g~~--~~~~~~~i~~al~~a~l~~~i~~--Lp~GldT~vge~G~ 508 (616)
+| +.|+||||+|+ .+|- ||.+-|.= ..+ .+.-.++..+.++.+++.+-... .| .
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP-----------h 153 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP-----------H 153 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC-----------c
Confidence 63 56999999987 5664 66655543 211 01124557778888888665444 44 5
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 585 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~I 585 (616)
.||||||||+.||+||..+|++||+||||.|||+.+++.|++.|+++. .+.++|+|||++..+. .||||+||++|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 799999999999999999999999999999999999999999999876 5889999999999875 5999999999999
Q ss_pred EEecChhHHhhcC-ChhHH
Q 007152 586 VESGTHEELLSKG-GVYTA 603 (616)
Q Consensus 586 ve~G~~~eL~~~~-~~y~~ 603 (616)
+|.|+.++++++. -.|.+
T Consensus 234 VE~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 234 VETGPTEEILSNPQHPYTR 252 (539)
T ss_pred EEecCHHHHHhccCCcccH
Confidence 9999999999763 33544
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.1e-41 Score=372.49 Aligned_cols=212 Identities=28% Similarity=0.407 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHH-Hhc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEH-LHR 446 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i~~~~~~~-~r~ 446 (616)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3699999999999999999999999999999999999987 7999999999998877654 467
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCCCC-----CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGCDG-----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~~~-----~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.++||||++.+|.. |++||+.++... ..+. +++.++++..++.+.. .+.. ...|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~----~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRP----VGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCc----hhhCCHHHHH
Confidence 89999999988864 999999986320 0111 2344555555443211 1222 3469999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998864 4789999999999875 5999999999999999987654
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.5e-41 Score=372.71 Aligned_cols=222 Identities=25% Similarity=0.405 Sum_probs=179.2
Q ss_pred cEEEEeEEEECCC--CCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC-CEe---CCCCC--
Q 007152 369 EVELDDVWFAYPS--RPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN-GVP---LVEIS-- 440 (616)
Q Consensus 369 ~I~~~~vsf~Y~~--~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id-g~~---i~~~~-- 440 (616)
-|+++||+++|++ ....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 112469999999999999999999999999999999999999999999996 643 33333
Q ss_pred -HHHHhcccEEEccCCCcCC-ccHHHHHhcCC----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 441 -HEHLHRKISIVSQEPVLFN-CSIEENIAYGC----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 441 -~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~----~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
...+|+.++|+||++.+|. -|++||+.++. +....++++.++++..++.+.- + +.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~---~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK---A---EEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc---c---hhhhhCChhhCCHHH
Confidence 2345778999999998887 59999998631 1011223466677777764310 0 001122235799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecCh
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~ 591 (616)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998875 2789999999999875 5999999999999999999
Q ss_pred hHHhh
Q 007152 592 EELLS 596 (616)
Q Consensus 592 ~eL~~ 596 (616)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88754
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-41 Score=325.28 Aligned_cols=190 Identities=23% Similarity=0.360 Sum_probs=163.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ +.++ ++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999963 2455 599999999999999999999999999999999999999999999886543 35699
Q ss_pred EEccCCCc-CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 450 IVSQEPVL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 450 ~v~Q~~~l-f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
|++|++.+ |+.|++||+.++.+....++++.++++..++.++.+ ..+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998764 678999999986431124566788888888766543 335789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCchhhhhcCEEE
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVA 578 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrl~~l~~aD~Ii 578 (616)
+++||||||++||+.+.+.+.+.+++. .+++|+|+|||+++.++.||-|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999753 46799999999999999999764
No 300
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-41 Score=382.56 Aligned_cols=217 Identities=23% Similarity=0.412 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCC------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCC
Q 007152 369 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEI 439 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~ 439 (616)
+++|.++. +++.. .++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666665 44322 1467999999999999999999999999999999999999885 799999999875
Q ss_pred CHHHHhcccEEEccCCCcCC-ccHHHHHhcCCC----CCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCC--CC
Q 007152 440 SHEHLHRKISIVSQEPVLFN-CSIEENIAYGCD----GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGER--GV 508 (616)
Q Consensus 440 ~~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~----~~~~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~--G~ 508 (616)
...+|+.++||+|++++|+ .||+|||.|+.. ...+.++ +.++++..+ |++..||.+|+. +.
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~ 165 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVK 165 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCC
Confidence 4678999999999999995 599999998642 1123222 333333333 455789999985 47
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCch--hhhhcCEEEEEeCCEE
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS--TVQSADTVAVVSDGEI 585 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~--~l~~aD~Iivl~~G~I 585 (616)
.||||||||++|||||+.+|++++||||||+||+.+...+.+.++++. +++|+|+++|+++ ..+.+|+|++|++|++
T Consensus 166 ~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 166 GLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRV 245 (617)
T ss_pred CcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeE
Confidence 999999999999999999999999999999999999999999999876 4899999999996 4788999999999999
Q ss_pred EEecChhHHhh
Q 007152 586 VESGTHEELLS 596 (616)
Q Consensus 586 ve~G~~~eL~~ 596 (616)
++.|+++|+.+
T Consensus 246 v~~G~~~~~~~ 256 (617)
T TIGR00955 246 AYLGSPDQAVP 256 (617)
T ss_pred EEECCHHHHHH
Confidence 99999998853
No 301
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-41 Score=322.35 Aligned_cols=215 Identities=28% Similarity=0.486 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-ccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r-~~i 448 (616)
++.++++.+|.+ -.+++|+||++++||++|++||||||||||+|++.|+|+|++|+|.++|.||..+++...- .-|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999964 3689999999999999999999999999999999999999999999999999999987764 459
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-----------------CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-----------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-----------------~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+--+|.+.+|++ |+.||+..+.-. ....++-++.|+.++|.+. -.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-----------a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-----------ADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-----------hcchhhcC
Confidence 999999999976 999999987210 0112334445555555544 33445689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEE
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVE 587 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive 587 (616)
|+||+.|+-|||||..+|++|+||||.++|.+.-...+.+.|+++.+ +.|+++|-|+++.+ ..||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999998874 48999999999986 5599999999999999
Q ss_pred ecChhHHhhcC
Q 007152 588 SGTHEELLSKG 598 (616)
Q Consensus 588 ~G~~~eL~~~~ 598 (616)
+|+++|..++.
T Consensus 231 eG~P~eV~~dp 241 (250)
T COG0411 231 EGTPEEVRNNP 241 (250)
T ss_pred cCCHHHHhcCH
Confidence 99999987653
No 302
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-41 Score=307.76 Aligned_cols=214 Identities=29% Similarity=0.492 Sum_probs=189.4
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+.+|+|++-.+ +.+|+++||++++||.+||+||||||||||+|.|+|.+.|++|++.+||+++.++++.++-++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998864 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCc-CCccHHHHHhcCCCC-----CCCHHH--HHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 450 IVSQEPVL-FNCSIEENIAYGCDG-----KASSAD--IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 450 ~v~Q~~~l-f~~TIreNi~~g~~~-----~~~~~~--i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+.||+..| |+-|++|-+.||.-+ ++.+++ ..+++..+++..+-.+ .=..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHH
Confidence 99999997 999999999999631 122444 6788888888766433 2357999999999999
Q ss_pred HHHccC------CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhH
Q 007152 522 RALMMN------PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 522 RAll~~------p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 593 (616)
|.|..- +.+|+||||||+||..-...+++..+++. ++..++.|=|+|+.. ..||||++|.+||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 999853 34889999999999999999999999886 578999999999974 6799999999999999999998
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8753
No 303
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=3.2e-41 Score=324.80 Aligned_cols=175 Identities=31% Similarity=0.484 Sum_probs=150.3
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhcccEEEccCC--CcCCc
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHRKISIVSQEP--VLFNC 460 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~--~~~~~~r~~i~~v~Q~~--~lf~~ 460 (616)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .....+++.++|+||++ .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999998 57889
Q ss_pred cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 007152 461 SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 535 (616)
Q Consensus 461 TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDE 535 (616)
|++||+.++.. ...+ ++++.++++..++.++.+..| ..||||||||++|||||+++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999988521 0122 235677788888876655443 5799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh
Q 007152 536 ATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST 570 (616)
Q Consensus 536 pTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~ 570 (616)
||++||+.+.+.+.+.|+++. +++|+|+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998875 47899999999864
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.2e-41 Score=372.92 Aligned_cols=213 Identities=26% Similarity=0.476 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCCEEEEC---------------
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIKGKILLN--------------- 432 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~--~~~~G~I~id--------------- 432 (616)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 36999999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcccEEEccC-CCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcC
Q 007152 433 --------GVPLV-------EIS---HEHLHRKISIVSQE-PVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMAN 487 (616)
Q Consensus 433 --------g~~i~-------~~~---~~~~r~~i~~v~Q~-~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~ 487 (616)
|.++. ..+ ...+|+.++||||+ +.+|+ .|++||+.++.. ...+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33321 111 23467889999998 56776 599999987421 0111 245667777777
Q ss_pred chHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEe
Q 007152 488 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIA 565 (616)
Q Consensus 488 l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~It 565 (616)
+.+..++. ..+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|+||
T Consensus 158 l~~~~~~~-----------~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITHI-----------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred ChhhhhcC-----------cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 76554433 36799999999999999999999999999999999999999999998874 378999999
Q ss_pred cCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 566 HRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 566 Hrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|+++.+. .||+|++|++|++++.|+++++.+
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999885 599999999999999999988865
No 305
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.7e-41 Score=299.25 Aligned_cols=209 Identities=30% Similarity=0.480 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---H
Q 007152 369 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---L 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~-~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~ 444 (616)
-|++++++.+.++. .+-.+|++++|.|++||.+|||||||||||||+.+|+|+-+|++|+|.+.|+++.+++.+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888776543 2346899999999999999999999999999999999999999999999999999999654 4
Q ss_pred h-cccEEEccCCCcC-CccHHHHHhcCCC--C--CCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 445 H-RKISIVSQEPVLF-NCSIEENIAYGCD--G--KAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 445 r-~~i~~v~Q~~~lf-~~TIreNi~~g~~--~--~~~-~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
| +++|+|+|..+|. +-|-.||+.+-.. . ..+ .+.-++.++.+||.+-+...| .+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 5 6799999999987 5699999987421 1 111 223566677777777666666 6899999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
+||||||...|+||+-||||-+||.+|-+.|.+-+..+- .+.|.|+|||++.....|||++.|++|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999886553 58899999999999999999999999999863
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.3e-41 Score=326.43 Aligned_cols=193 Identities=34% Similarity=0.553 Sum_probs=169.8
Q ss_pred cEEEEeEEEECCCCC------CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH
Q 007152 369 EVELDDVWFAYPSRP------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~------~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~ 442 (616)
-++++|++..|+... ...+++||||+|++||+++|||+||||||||.++|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999997432 136899999999999999999999999999999999999999999999999987766
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
. +..++++.+.++.+|+.+ +..+.| ..||||||||++||
T Consensus 82 ----------------------------~-~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IA 121 (268)
T COG4608 82 ----------------------------K-EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIA 121 (268)
T ss_pred ----------------------------h-hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHH
Confidence 1 234567999999999876 666777 57999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|||.-+|+++++|||||+||...++.|.+-+.++. .+-|.++|||+++.+++ ||+|.||..|+|||.|+-+|+..+.
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999999999999999999999987664 47899999999999987 9999999999999999999998753
Q ss_pred -ChhHH
Q 007152 599 -GVYTA 603 (616)
Q Consensus 599 -~~y~~ 603 (616)
-.|.+
T Consensus 202 ~HpYTk 207 (268)
T COG4608 202 LHPYTK 207 (268)
T ss_pred CCHHHH
Confidence 33543
No 307
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-41 Score=370.57 Aligned_cols=217 Identities=22% Similarity=0.401 Sum_probs=177.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCCEEEECCEeCCCCCH-HHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-PIKGKILLNGVPLVEISH-EHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-~~~G~I~idg~~i~~~~~-~~~r~ 446 (616)
.|+++||+++|+...+.++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999953113469999999999999999999999999999999999998 599999999999875553 45677
Q ss_pred ccEEEccCC---CcCC-ccHHHHHhcCCCCC------CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 447 KISIVSQEP---VLFN-CSIEENIAYGCDGK------ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 447 ~i~~v~Q~~---~lf~-~TIreNi~~g~~~~------~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
.++|+||++ .+|. .|+.||+.++.... .+. +++.++++..++.+ + ........|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~----~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------A----SPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------C----CcccccccCCH
Confidence 899999996 3554 69999998752100 111 23444555544421 0 12233467999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
|||||++||||++.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||++++|++|+|+..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 5789999999999875 599999999999999998
Q ss_pred hhHHh
Q 007152 591 HEELL 595 (616)
Q Consensus 591 ~~eL~ 595 (616)
.+++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 88763
No 308
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=9.8e-41 Score=329.43 Aligned_cols=195 Identities=27% Similarity=0.351 Sum_probs=157.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
+.++|++.+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++... ....
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~- 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG- 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc-
Confidence 677888888863 4699999999999999999999999999999999999999999999999876421 1111
Q ss_pred EEccCCCcCCccHHHHHhcCCCC-CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDG-KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~-~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
.+..+.|++||+.++... ..+. +++.++++..++.+.. ++.+ ..||||||||++||||+
T Consensus 94 -----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~laral 157 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-------DLPV----KTYSSGMKARLAFAIAT 157 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-------hCCh----hhCCHHHHHHHHHHHHH
Confidence 122357999999875320 1122 2345555555554433 3333 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998764 4689999999999875 59999999999998765
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.4e-38 Score=383.37 Aligned_cols=219 Identities=19% Similarity=0.310 Sum_probs=189.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++|++++|+++ ++++|+|+||+|++||++||+|+||||||||+|+|+|+.+|++|+|.++|.++.. +....|+.
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999742 3479999999999999999999999999999999999999999999999999965 45677889
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
|||+||++.++. -|++||+.+... ...+ ++.+.++++..++.++.++.+ ..||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~-----------~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA-----------GTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999886 599999986311 0112 234556778888776654433 57999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKGG 599 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~~ 599 (616)
|||+.+|+|++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.++. ||||++|++|++++.|+.++|.++-+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 99999999999999999999999999999998864 58999999999998865 99999999999999999999977543
No 310
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-40 Score=329.38 Aligned_cols=222 Identities=34% Similarity=0.535 Sum_probs=189.1
Q ss_pred CcEEEEeEEEECCCCC--------CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC
Q 007152 368 GEVELDDVWFAYPSRP--------NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI 439 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~--------~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~ 439 (616)
.-++.+||...||-+. ...+.+++||+.++||+++|||+||||||||-..|+|+.+++ |+|.++|.++..+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 3589999999997431 134789999999999999999999999999999999999776 9999999999999
Q ss_pred CHHH---HhcccEEEccCCCc-CC--ccHHHHHhcCC----CCCCC----HHHHHHHHHHcCchHH-HHcCCCccccccc
Q 007152 440 SHEH---LHRKISIVSQEPVL-FN--CSIEENIAYGC----DGKAS----SADIENAAKMANAHDF-ISNFPEKYQTFVG 504 (616)
Q Consensus 440 ~~~~---~r~~i~~v~Q~~~l-f~--~TIreNi~~g~----~~~~~----~~~i~~al~~a~l~~~-i~~Lp~GldT~vg 504 (616)
+.++ +|+.+-.|+|||+= ++ -||.+-|.-|- | ..+ ++++.+|++.+|++.- ..+.|
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP-------- 424 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP-------- 424 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC--------
Confidence 9765 57899999999982 33 47777776552 2 222 4568899999999865 34555
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEe
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVS 581 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~ 581 (616)
..+|||||||||||||+.-+|.+++|||||||||-.-.+.|.+-++++- .+-+=++|||+|..++. ||+|+||.
T Consensus 425 ---hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 425 ---HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred ---cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 4699999999999999999999999999999999999999999998764 57799999999999986 99999999
Q ss_pred CCEEEEecChhHHhhcC-ChhH
Q 007152 582 DGEIVESGTHEELLSKG-GVYT 602 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~~-~~y~ 602 (616)
+|+|||+|+.+++.++. ..|.
T Consensus 502 ~GkiVE~G~~~~if~~P~~~YT 523 (534)
T COG4172 502 DGKIVEQGPTEAVFANPQHEYT 523 (534)
T ss_pred CCEEeeeCCHHHHhcCCCcHHH
Confidence 99999999999999764 3454
No 311
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.4e-38 Score=381.52 Aligned_cols=213 Identities=25% Similarity=0.414 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCC-CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCCEEEECCEeCCCCCHHHH
Q 007152 369 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD---PIKGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~-~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~---~~~G~I~idg~~i~~~~~~~~ 444 (616)
.++++||+++|+.+ .++++|+|+|++|++|+++||+||||||||||+++|+|..+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 47999999999632 13579999999999999999999999999999999999998 78899999999985 357
Q ss_pred hcccEEEccCCC-cCCccHHHHHhcCC----CCCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 445 HRKISIVSQEPV-LFNCSIEENIAYGC----DGKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 445 r~~i~~v~Q~~~-lf~~TIreNi~~g~----~~~~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
|+.++||+|++. ++..|++||+.++. |.+.+++ ++.++++..++.+ -.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 899999999875 55689999999852 2123332 3566777666543 468999998999999999
Q ss_pred HHHHHHHHHccCCC-EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh--hhhcCEEEEEeCC-EEEEecC
Q 007152 516 QRVAIARALMMNPR-ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDG-EIVESGT 590 (616)
Q Consensus 516 QRlalARAll~~p~-iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~--l~~aD~Iivl~~G-~Ive~G~ 590 (616)
||++|||||+++|+ ||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 68999999999996 3789999999997 9999998
Q ss_pred hh
Q 007152 591 HE 592 (616)
Q Consensus 591 ~~ 592 (616)
..
T Consensus 988 ~~ 989 (1394)
T TIGR00956 988 LG 989 (1394)
T ss_pred cc
Confidence 64
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.2e-40 Score=397.56 Aligned_cols=217 Identities=21% Similarity=0.383 Sum_probs=190.1
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++||+++|+++ ++++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3579999999999999999999999999999999999999999999999999975 56778999
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
+||+||++.+|+ .|++|||.++.. ...+ ++++.+.++..++.+..+ ....+||||||||++||
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-----------EEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHH
Confidence 999999999997 599999987521 0112 345667777777655433 33467999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||+.+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.++ .||||++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999888999999999999886 5999999999999999999999875
No 313
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-41 Score=300.34 Aligned_cols=215 Identities=33% Similarity=0.496 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC---------
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI--------- 439 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~--------- 439 (616)
.++++|+..+|... .||++|||+.++|+.+.|+|.|||||||+++|+.=+-.|+.|.|.++|.+++--
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999744 599999999999999999999999999999999999999999999999877421
Q ss_pred -C---HHHHhcccEEEccCCCcCC-ccHHHHHhcCCCC---CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 440 -S---HEHLHRKISIVSQEPVLFN-CSIEENIAYGCDG---KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 440 -~---~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~---~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
+ ...+|.+.++|+|+..|.+ -|+.||+.-+ |- ..+. ++-+..+.++|+.+--+..|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 1 3557889999999999985 6999998653 21 0122 33455678888888777766
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 585 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~I 585 (616)
..|||||+||.||||||.-+|+++++|||||||||+--..+++.++++. +|+|.++|||-+...++ +.+++++++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 6799999999999999999999999999999999999999999998876 69999999999999987 799999999999
Q ss_pred EEecChhHHhhcC
Q 007152 586 VESGTHEELLSKG 598 (616)
Q Consensus 586 ve~G~~~eL~~~~ 598 (616)
.|+|+++++..+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999998753
No 314
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-41 Score=309.40 Aligned_cols=223 Identities=27% Similarity=0.490 Sum_probs=184.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~ 447 (616)
.+..+|+..+|.. ++|++++||++++||.|++.||||+||||....+.|+.+|++|+|.+||.|+..++.... |--
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5788999999964 479999999999999999999999999999999999999999999999999999996554 456
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|||+||||.+|.+ |++|||...-. ..+.+.+.+-++..+++.++.+ .+...-...|..||||||.|+-|||||..
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 9999999999976 99999987642 2221222222222222333322 23333345689999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCch-hhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~-~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+|+.++||||++++||.+-..|.+.++.++ +|--+++.-|+.. ++..|||.+++.+|+|..+|+++|+.++.
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999999998886 4667777789885 78999999999999999999999998754
No 315
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=365.44 Aligned_cols=210 Identities=21% Similarity=0.343 Sum_probs=172.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.++++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 38999999999999999999999999999999999999999999999999876554 456788
Q ss_pred cEEEccCC---CcCC-ccHHHHHhcCCCC---------C-CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCC
Q 007152 448 ISIVSQEP---VLFN-CSIEENIAYGCDG---------K-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVR 509 (616)
Q Consensus 448 i~~v~Q~~---~lf~-~TIreNi~~g~~~---------~-~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~ 509 (616)
++||||++ .+|. -|++||+.++... . .+ .+++.++++..++. ++-.++. -..
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQN----ITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCc----ccc
Confidence 99999984 5675 5999999875310 0 01 12244445544442 0122333 346
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEE
Q 007152 510 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVE 587 (616)
Q Consensus 510 LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive 587 (616)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 578999999999876 5699999999999999
Q ss_pred ecChhH
Q 007152 588 SGTHEE 593 (616)
Q Consensus 588 ~G~~~e 593 (616)
.++..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887633
No 316
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-39 Score=343.70 Aligned_cols=208 Identities=33% Similarity=0.481 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc-c
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR-K 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~-~ 447 (616)
-++++|++.+|++ .++|+|+||++.+||..|++|.||||||||+|+|+|.|+|++|+|++||.+..-.++.+-++ -
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 47999999999999999999999999999999999999999999999999999888766655 5
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCCC-----CCHHHHHHHHH----HcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDGK-----ASSADIENAAK----MANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~~-----~~~~~i~~al~----~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
|+.|+||..|++ -||.|||-+|+... .+..++++.++ ..++. ...+++|++ ||+||||-
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-------~~~~~~v~~----LsiaqrQ~ 153 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-------IDPDTLVGD----LSIAQRQM 153 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-------CChhhhhhh----CCHHHHHH
Confidence 999999999996 59999999997522 23344444333 33322 226677765 99999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecC
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 590 (616)
++||||+..+++|+|||||||+|+....+.+++.+++++ +|.++|+||||++.+ +-||||.||.||+.+..++
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999999999999999999998899999999887 799999999999876 6699999999999998776
No 317
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=6.8e-40 Score=361.79 Aligned_cols=215 Identities=21% Similarity=0.357 Sum_probs=174.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCH-HHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISH-EHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~~~~~-~~~r~ 446 (616)
-|+++|++++|++..+.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 58999999999432123699999999999999999999999999999999999995 89999999999875543 56788
Q ss_pred ccEEEccCC---CcCC-ccHHHHHhcCCCC------CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 447 KISIVSQEP---VLFN-CSIEENIAYGCDG------KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 447 ~i~~v~Q~~---~lf~-~TIreNi~~g~~~------~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
+++||||++ .+|. .|++||+.++... ... ++++.++++..++.+. -.+.. ...|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFLP----IGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccCc----cccCCH
Confidence 999999996 4665 5999999885210 011 1234555555544210 12233 356999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+. .||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 5789999999999875 599999999999998775
Q ss_pred hhH
Q 007152 591 HEE 593 (616)
Q Consensus 591 ~~e 593 (616)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 443
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=358.87 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=175.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999882 479
Q ss_pred EEEccCCC--cCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 449 SIVSQEPV--LFN-CSIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 449 ~~v~Q~~~--lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
+|+||++. +++ .|++||+.+.......++++.++++..++. +..+ .....||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIK-----------KSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhc-----------CcccccCHHHHHHHHHHHHH
Confidence 99999974 443 699999975321123456788888888773 3332 23467999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhcCC
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEELLSKGG 599 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G~~~eL~~~~~ 599 (616)
+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++..+
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 9999999999999999999999999999886 4699999999998764 9999999999998 7899988876543
No 319
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.3e-39 Score=338.23 Aligned_cols=182 Identities=36% Similarity=0.598 Sum_probs=158.9
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHHHHHhcCCCC-CCC----H
Q 007152 403 LVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENIAYGCDG-KAS----S 476 (616)
Q Consensus 403 IvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIreNi~~g~~~-~~~----~ 476 (616)
|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++|++|++.+|+. |++||+.++... ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 46789999999999975 999999986310 112 2
Q ss_pred HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 007152 477 ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 477 ~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~ 556 (616)
+++.++++..++.++.++.| .+||||||||++|||||+++|+++|||||||+||+.+.+.+.+.|+++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~ 147 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 45677888888776655544 5799999999999999999999999999999999999999999998875
Q ss_pred C--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 557 K--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 557 ~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++
T Consensus 148 ~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 3 789999999999764 5999999999999999999999865
No 320
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.1e-39 Score=357.54 Aligned_cols=208 Identities=22% Similarity=0.368 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.|+++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999984 26999999999999999999999999999999999999999999999999987765 346778
Q ss_pred cEEEccCC---CcC-CccHHHHHhcCCCCC-------CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 448 ISIVSQEP---VLF-NCSIEENIAYGCDGK-------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 448 i~~v~Q~~---~lf-~~TIreNi~~g~~~~-------~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
++||||++ .+| +.|++||+.++.... .+ ++++.++++..++.+ .........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT----------PSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC----------CCccCchhhCCH
Confidence 99999997 355 469999998742100 11 223445555544420 112333457999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998875 5789999999999875 599999999999999998
Q ss_pred hhHH
Q 007152 591 HEEL 594 (616)
Q Consensus 591 ~~eL 594 (616)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
No 321
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-39 Score=326.92 Aligned_cols=202 Identities=25% Similarity=0.329 Sum_probs=163.3
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCCCH
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEISH 441 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~-----------idg~~i~~~~~ 441 (616)
.||+++|++. .++|+|+|+ +++|++++|+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 4 ~~~~~~y~~~--~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 4688999642 368999995 999999999999999999999999999999999996 88998876644
Q ss_pred HHHhc--ccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 442 EHLHR--KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 442 ~~~r~--~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
+..|. .++|++|++.+++.++.+|+...-.....++++.++++..++.+.. .....+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 44443 3688888877776555555544211112245677777777765443 3345689999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
||||++++|+++|||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|+ |++++.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999999998875 4799999999999987 599999994 6676544
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=357.90 Aligned_cols=201 Identities=22% Similarity=0.378 Sum_probs=166.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 36999999999999999999999999999999999999999999999972 4699
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC---------------CC----------------------CHHHHHHHHHHcCchHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG---------------KA----------------------SSADIENAAKMANAHDF 491 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~---------------~~----------------------~~~~i~~al~~a~l~~~ 491 (616)
|++|++.+|. -|++||+.++... .. .++++.++++..++.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 9999998876 4999999875210 00 01233444444444322
Q ss_pred HHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh
Q 007152 492 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 571 (616)
Q Consensus 492 i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l 571 (616)
.. .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+
T Consensus 148 ~~----------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~ 215 (530)
T PRK15064 148 QH----------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFL 215 (530)
T ss_pred Hh----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHH
Confidence 11 123467999999999999999999999999999999999999999999975 478999999999987
Q ss_pred h-hcCEEEEEeCCEE-EEecChhHHhh
Q 007152 572 Q-SADTVAVVSDGEI-VESGTHEELLS 596 (616)
Q Consensus 572 ~-~aD~Iivl~~G~I-ve~G~~~eL~~ 596 (616)
. .||+|++|++|++ +..|++++.++
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 5 5999999999999 47899988764
No 323
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=5.1e-39 Score=320.70 Aligned_cols=194 Identities=24% Similarity=0.336 Sum_probs=159.5
Q ss_pred EECCCCCCCcceeceeEEEe-----CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEE
Q 007152 377 FAYPSRPNHMVLKGITLKLL-----SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIV 451 (616)
Q Consensus 377 f~Y~~~~~~~vL~~isl~I~-----~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v 451 (616)
|+||+. ...++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 678753 358899999987 69999999999999999999999999999999999984 69999
Q ss_pred ccCCC-cCCccHHHHHhcCCCCCC-CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 452 SQEPV-LFNCSIEENIAYGCDGKA-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 452 ~Q~~~-lf~~TIreNi~~g~~~~~-~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
||++. .++.|++||+.+...... ..+...++++..++.+..+ .....||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-----------REVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99997 468999999986532111 1233556666666654432 3345799999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEE--EecChhHHh
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV--ESGTHEELL 595 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv--e~G~~~eL~ 595 (616)
++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+++..+ ..+++.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999875 3799999999999887 59999999765433 456666654
No 324
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.9e-39 Score=358.32 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=166.4
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2469
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCC----------------CCCC---------HHHHHHHHHHcC-------chHHHHcC
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCD----------------GKAS---------SADIENAAKMAN-------AHDFISNF 495 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~----------------~~~~---------~~~i~~al~~a~-------l~~~i~~L 495 (616)
+||||+|.+|+. |++||+.++.. .... .+++.+.+..++ +.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 99999987521 0000 011122222211 11112221
Q ss_pred CCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-c
Q 007152 496 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-A 574 (616)
Q Consensus 496 p~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-a 574 (616)
|++ ........||||||||++||||++.+|++||||||||+||+++...+.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 221 1223345799999999999999999999999999999999999999999998863 699999999998865 8
Q ss_pred CEEEEEeCCEEE-EecChhHHhh
Q 007152 575 DTVAVVSDGEIV-ESGTHEELLS 596 (616)
Q Consensus 575 D~Iivl~~G~Iv-e~G~~~eL~~ 596 (616)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899887654
No 325
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=356.83 Aligned_cols=210 Identities=21% Similarity=0.353 Sum_probs=173.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.++++|++++ .+++|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999842 38999999999999999999999999999999999999999999999999875543 456788
Q ss_pred cEEEccCCC---cC-CccHHHHHhcCCCCCC-------C----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 448 ISIVSQEPV---LF-NCSIEENIAYGCDGKA-------S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 448 i~~v~Q~~~---lf-~~TIreNi~~g~~~~~-------~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
++|+||++. +| +.|+.||+.++..... + ++++.++++..++. ++-.++. ...|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQL----IMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCc----cccCCH
Confidence 999999973 55 4799999987531110 1 12344555555441 0112333 347999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 590 (616)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+ +.||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998875 478999999999987 5699999999999999999
Q ss_pred hhHHh
Q 007152 591 HEELL 595 (616)
Q Consensus 591 ~~eL~ 595 (616)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87754
No 326
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=310.65 Aligned_cols=198 Identities=33% Similarity=0.514 Sum_probs=180.0
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeC----CCCCHHHHhcccEEEccCCCcCC-ccHH
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL----VEISHEHLHRKISIVSQEPVLFN-CSIE 463 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i----~~~~~~~~r~~i~~v~Q~~~lf~-~TIr 463 (616)
=++||+.+.-..+||-|+||||||||+|+++|+..|++|.|.+||.-+ +.+...--+++||||+||..||. -|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 368999988899999999999999999999999999999999999866 35556667889999999999995 6999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
-|++||.. ..+.+++.+++...|+...+++.| .+||||||||+||+|||+.+|++|+||||.|+||-.
T Consensus 95 gNL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~ 162 (352)
T COG4148 95 GNLRYGMW-KSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP 162 (352)
T ss_pred cchhhhhc-ccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence 99999976 556778999999999999999998 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 544 SEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 544 te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
..+.++-.++++.+ +--++.|||.++.+ +-||+|++|++|++.+.|+-+|.+++.
T Consensus 163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999988764 45799999999865 679999999999999999999998754
No 327
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=293.81 Aligned_cols=204 Identities=31% Similarity=0.487 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
+..+++|.+|++. ..++|+|+|++|.+||+++++||||||||||+|+++|+.+|+.|+|.+||.+|..-..+ =|
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae-----rg 77 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE-----RG 77 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc-----ce
Confidence 5678899999876 35699999999999999999999999999999999999999999999999999865543 49
Q ss_pred EEccCCCcCC-ccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 450 IVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 450 ~v~Q~~~lf~-~TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+|+|++-|++ -|+.||+.||-.- ..+ .+...+.+..+||.++=++. -..||||||||+.||||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~-----------i~qLSGGmrQRvGiARA 146 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY-----------IWQLSGGMRQRVGIARA 146 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc-----------eEeecchHHHHHHHHHH
Confidence 9999999998 6999999998530 122 22345667777776653332 25799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh-hhhcCEEEEEe--CCEEEEecC
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVS--DGEIVESGT 590 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~-l~~aD~Iivl~--~G~Ive~G~ 590 (616)
|..+|+.|+||||.+|||+-|.+.+++.+-++. .+|-+++|||..+. +--|++++||. .|||++.=+
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999999999999999999999999999987765 48999999999986 56699999997 589998644
No 328
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=5.2e-39 Score=314.33 Aligned_cols=192 Identities=18% Similarity=0.256 Sum_probs=156.9
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE-ECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHHH
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-LNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEE 464 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~-idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIre 464 (616)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777533 13467788875 9999
Q ss_pred HHhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 465 NIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 465 Ni~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
|+.+... ...+.++..+.+.. ...+++.+++.++ .||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCYQ------LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH------HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987421 12334444333211 1234555555554 49999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcCChh
Q 007152 544 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVY 601 (616)
Q Consensus 544 te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~~~y 601 (616)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-+++....+.|
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 99999998866556789999999999985 69999999999999999998886544433
No 329
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.3e-39 Score=357.38 Aligned_cols=210 Identities=27% Similarity=0.406 Sum_probs=172.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++|++++|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 23699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCCC----------------CC-C--------HHHHHHHHHHcCchH-------HHHcC
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCDG----------------KA-S--------SADIENAAKMANAHD-------FISNF 495 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~~----------------~~-~--------~~~i~~al~~a~l~~-------~i~~L 495 (616)
+||||+|.+|+ .|++||+.++... .. . ..++.++++.++..+ .++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 00 1 123555666665432 22222
Q ss_pred CCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-c
Q 007152 496 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-A 574 (616)
Q Consensus 496 p~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-a 574 (616)
|++ .......+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 222 123445689999999999999999999999999999999999999999999876 3699999999998865 8
Q ss_pred CEEEEEeCCEEE-EecChhHHhh
Q 007152 575 DTVAVVSDGEIV-ESGTHEELLS 596 (616)
Q Consensus 575 D~Iivl~~G~Iv-e~G~~~eL~~ 596 (616)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6799987654
No 330
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-39 Score=282.25 Aligned_cols=213 Identities=31% Similarity=0.503 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCE--eCCCCC----HH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV--PLVEIS----HE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~--~i~~~~----~~ 442 (616)
+|++++++|.|..+ .+|-||+|+-+.|+.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.++.+ ..
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999753 5899999999999999999999999999999999999999999999775 444333 46
Q ss_pred HHhcccEEEccCCCcCC-ccHHHHHhcCCCC---CCCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 443 HLHRKISIVSQEPVLFN-CSIEENIAYGCDG---KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~---~~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
++|+.+|+|+|.-+|.+ -|+-||+.-. |- ..++ .+-.+.++...+.++.+++| ..|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccch
Confidence 78999999999999985 6999999753 21 1222 23456778888889988888 5799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~ 592 (616)
.||+||||||.-+|++|++||||+||||+-.+.+.+.|+++. -|.|-++|||..+..+. |.+++.||+|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 999999999999999999999999999998888889999886 47899999999998765 9999999999999999987
Q ss_pred HHhh
Q 007152 593 ELLS 596 (616)
Q Consensus 593 eL~~ 596 (616)
-.-+
T Consensus 227 ~ft~ 230 (242)
T COG4161 227 CFTE 230 (242)
T ss_pred hccC
Confidence 6544
No 331
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.2e-38 Score=292.03 Aligned_cols=143 Identities=36% Similarity=0.580 Sum_probs=134.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++++|++++|++ .++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 26999999999999999999999999999999999999999999999994 4799
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
|+|| |||||+||++||||++++|+
T Consensus 67 ~~~~--------------------------------------------------------lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 67 YFEQ--------------------------------------------------------LSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred EEcc--------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 9999 99999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCE
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGE 584 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~ 584 (616)
++||||||++||+.+...+.+.++++ ++|+|++||+++.+. .||++++|++|+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999886 579999999999885 489999999985
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.7e-39 Score=353.40 Aligned_cols=211 Identities=24% Similarity=0.364 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~ 447 (616)
-|+++|+++ .+|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999983 1599999999999999999999999999999999999999999999999998777654 4678
Q ss_pred cEEEccCC---CcCC-ccHHHHHhcCC----CC--CC--CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 448 ISIVSQEP---VLFN-CSIEENIAYGC----DG--KA--SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 448 i~~v~Q~~---~lf~-~TIreNi~~g~----~~--~~--~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
|+|+||++ .+|. -|+.+|+.... +. .. .++++.++++..++. ++..+ .....||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~----~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAE----QAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCcc----CccccCCcHHH
Confidence 99999986 3665 59999986420 10 00 112244445544432 01223 33457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 4789999999999885 599999999999999998887
Q ss_pred Hhhc
Q 007152 594 LLSK 597 (616)
Q Consensus 594 L~~~ 597 (616)
+.+.
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 6533
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.2e-38 Score=348.87 Aligned_cols=207 Identities=24% Similarity=0.312 Sum_probs=168.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCCC-CCHHHHh
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVE-ISHEHLH 445 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~~-~~~~~~r 445 (616)
.-|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 35999999999964 3599999999999999999999999999999999999876 69999999987632 2334577
Q ss_pred cccEEEccCCCcCC---ccHHHHHhcCCC------CCCC---HHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCCh
Q 007152 446 RKISIVSQEPVLFN---CSIEENIAYGCD------GKAS---SADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~---~TIreNi~~g~~------~~~~---~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LSG 512 (616)
+.++|++|++.++. .|+++++.++.. .... ++++.++++..++.+ ..+ .....|||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSg 404 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-----------APFHSLSW 404 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-----------CchhhCCH
Confidence 89999999987642 477777754310 0011 235667777777654 322 22357999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEecCchhhhh--cCEEEEEeCCEEEEe
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS--ADTVAVVSDGEIVES 588 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrl~~l~~--aD~Iivl~~G~Ive~ 588 (616)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|+|++.
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999999999988753 3 469999999999863 899999999999875
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-38 Score=344.83 Aligned_cols=209 Identities=19% Similarity=0.321 Sum_probs=167.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH-HHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE-HLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~-~~r~~ 447 (616)
.|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999974 1489999999999999999999999999999999999999999999999999877654 45778
Q ss_pred cEEEccCCC---cCC-ccHHHH-----HhcCCCC-C-CCH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 448 ISIVSQEPV---LFN-CSIEEN-----IAYGCDG-K-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 448 i~~v~Q~~~---lf~-~TIreN-----i~~g~~~-~-~~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
++|+||++. +|. .|+.+| +.+..+. . .+. +++.++++..++. .+- .......|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~----~~~~~~~LSg 394 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPG----HRTQIGSLSG 394 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCC----cccccccCCc
Confidence 999999963 565 577766 4322110 0 111 2233333333331 011 2334457999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
|||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||++++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 5899999999999874 699999999999998776
Q ss_pred hh
Q 007152 591 HE 592 (616)
Q Consensus 591 ~~ 592 (616)
.+
T Consensus 475 ~~ 476 (491)
T PRK10982 475 TK 476 (491)
T ss_pred cc
Confidence 54
No 335
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-38 Score=288.56 Aligned_cols=215 Identities=25% Similarity=0.479 Sum_probs=189.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+.+|.+ +.+++++|++||+|..++|+||+|+|||||+...+|+.++++|+|.+||.++.+++.+++-+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999974 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcC-CccHHHHHhcCCCC----CC---CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCDG----KA---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~~----~~---~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
.+-|+.++- .-||||=+.||+-+ .. +..-+.+|++-.+|.+.=++. =..||||||||--+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dry-----------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY-----------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHh-----------HHhcccchhhhhhhh
Confidence 999999985 46999999999731 11 223377888877776543221 135999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
-.+..+.|.++||||..+||-.-...+++.++++. -+||+++|-|+..... .+|+|+-|++|+++.+|+++|+++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~ 227 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPE 227 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHH
Confidence 99999999999999999999999999999998765 3899999999999875 59999999999999999999998753
No 336
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=319.18 Aligned_cols=206 Identities=29% Similarity=0.459 Sum_probs=175.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.+++++++.+||+ ..+++||||++++||+-|+.|+||+|||||+++|.|+|+|++|+|++||++++--++ +..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999983 368999999999999999999999999999999999999999999999999986665 566677
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCCC----CH----HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGKA----SS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~~----~~----~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
||+|.|.+.|++. |+.|||.+|.+... +. +++.+.++..|+ |--.|-.| ..||-|||||+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl-------~vdp~~~V----~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGL-------PVDPDAKV----ADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCC-------CCCcccee----ecCCcchhHHH
Confidence 9999999999975 99999999976211 22 233333333332 22334444 45999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES 588 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~ 588 (616)
-|-+|||++|++||||||||-|-|..-+.+++.++++. .|+|+|+|||++..++. ||++-||..|+++..
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 99999999999999999999999999999999999876 69999999999998755 999999999998643
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-37 Score=286.69 Aligned_cols=155 Identities=43% Similarity=0.729 Sum_probs=145.5
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++|++|+|++. ++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.......+++.++|
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~ 77 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGY 77 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEE
Confidence 368999999743 69999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007152 451 VSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 530 (616)
Q Consensus 451 v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~i 530 (616)
++| |||||+||++||||++.+|++
T Consensus 78 ~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 78 VPQ--------------------------------------------------------LSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred Eee--------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 999 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 007152 531 LLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGE 584 (616)
Q Consensus 531 liLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~~-aD~Iivl~~G~ 584 (616)
++|||||++||.++...+.+.+.++.+ ++|++++||+++.+.. ||+++++++|+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999988754 5899999999999988 59999999975
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=7e-37 Score=345.74 Aligned_cols=200 Identities=27% Similarity=0.403 Sum_probs=167.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
.-|+++||+|+|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 359999999999642 3699999999999999999999999999999999999999999999876 247
Q ss_pred cEEEccCCCcCCccHHHHHhcC----CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 448 ISIVSQEPVLFNCSIEENIAYG----CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g----~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+|++|++. ...++.+|..+. .+ ..++++++++++..++.+.... .....||||||||++||||
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~-~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcC-CCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHH
Confidence 999999873 233555663321 12 3457788999999888642211 2246799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHH
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEEL 594 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G~~~eL 594 (616)
++++|++|||||||++||+.+...+.+.+.+. + .|+|+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999999999999775 3 599999999998864 9999999999998 57887764
No 339
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.6e-37 Score=341.20 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=167.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3699999999999999999999999999999999999999999999965 21 59
Q ss_pred EEEccCC-CcCC-ccHHHHHhcCCCC---CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 449 SIVSQEP-VLFN-CSIEENIAYGCDG---KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 449 ~~v~Q~~-~lf~-~TIreNi~~g~~~---~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+|+||++ .++. -|++||+.++... ...+.+.+++++..++.+.. .+. ....||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD------QQK----KVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH------hcC----chhhCCHHHHHHHHHHHH
Confidence 9999997 5654 5999999876320 11233455566666553211 122 235799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeC-CEEE-EecChhHHhhc
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSD-GEIV-ESGTHEELLSK 597 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~-G~Iv-e~G~~~eL~~~ 597 (616)
++.+|++|||||||++||+.+...+.+.|+++. .|+|+|||+++.+. .||+|++|++ |++. ..|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999998873 49999999999875 4999999986 7886 47888887654
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=342.27 Aligned_cols=200 Identities=26% Similarity=0.390 Sum_probs=169.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 35999999999964 36999999999999999999999999999999999999999999999741 26
Q ss_pred cEEEccCC--CcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 448 ISIVSQEP--VLFN-CSIEENIAYGCDGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 448 i~~v~Q~~--~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
++|++|++ .+.. .|+.+++....+ ...++++.+++...++.. .... . ...||||||||++||||
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~-------~----~~~LSgGekqRl~La~~ 444 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKVTE-------E----TRRFSGGEKARLVLALI 444 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHhcC-------c----hhhCCHHHHHHHHHHHH
Confidence 99999985 3443 489998753223 334566788888877642 3322 2 35799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEE-EecChhHHh
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV-ESGTHEELL 595 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv-e~G~~~eL~ 595 (616)
++.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||++..+. .||+|++|++|+++ ..|++++..
T Consensus 445 l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 445 VWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999999887 3 59999999999886 59999999999997 689998874
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.2e-37 Score=340.00 Aligned_cols=202 Identities=24% Similarity=0.328 Sum_probs=165.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 5999999999964 3699999999999999999999999999999999999999999999955 21 69
Q ss_pred EEEccCCC-cCC-ccHHHHHhcCCCC-CC--CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 449 SIVSQEPV-LFN-CSIEENIAYGCDG-KA--SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 449 ~~v~Q~~~-lf~-~TIreNi~~g~~~-~~--~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
+|+||++. ++. .|++||+.++.+. .. .+.+.+++++..++.+.. .......||||||||++||||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHH
Confidence 99999973 554 5999999986421 11 133345556665553211 122335799999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeC-CEEE-EecChhHHhh
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSD-GEIV-ESGTHEELLS 596 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~-G~Iv-e~G~~~eL~~ 596 (616)
++.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+. .||+|++|++ |+++ ..|++++..+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999999873 49999999999876 4999999997 5876 4688877654
No 342
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=9.4e-37 Score=366.37 Aligned_cols=214 Identities=26% Similarity=0.422 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCC----------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeC
Q 007152 369 EVELDDVWFAYPSR----------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPL 436 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~----------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i 436 (616)
.++++||+|..+.. ....+|+|+|++++||+.+||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998521 123699999999999999999999999999999999999874 689999999876
Q ss_pred CCCCHHHHhcccEEEccCCCcCC-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 437 VEISHEHLHRKISIVSQEPVLFN-CSIEENIAYGC----DGKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 437 ~~~~~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~----~~~~~~~----~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
. ...+|+.++||+|++.++. .|++|||.++. |.+.+++ .+.++++..++.+. .|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 4 3567788999999988775 59999998852 2123332 36677777776543 467777544
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh--hhhcCEEEEEeC-
Q 007152 508 -VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD- 582 (616)
Q Consensus 508 -~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~--l~~aD~Iivl~~- 582 (616)
..||||||||++|||+|+.+|++|+||||||+||+.+...+++.|+++. +++|+|+++|+++. .+.+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 57999999999984 578999999996
Q ss_pred CEEEEecChh
Q 007152 583 GEIVESGTHE 592 (616)
Q Consensus 583 G~Ive~G~~~ 592 (616)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999853
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.4e-36 Score=343.21 Aligned_cols=201 Identities=26% Similarity=0.395 Sum_probs=167.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 5899999999964 36999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEccCC-CcCC-ccHHHHHhcCCCCCC--C--HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEP-VLFN-CSIEENIAYGCDGKA--S--SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~-~lf~-~TIreNi~~g~~~~~--~--~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+|++|++ .+++ .|+.||+.++.+ .. + +.++.+.+...++... ..+..+ ..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~----~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHPK------RAMTPV----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCHH------HHhChh----hhCCHHHHHHHHHHH
Confidence 9999986 4655 499999988643 11 2 3445666666555321 122333 469999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEe-CCEEEE-ecChhHHhh
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS-DGEIVE-SGTHEELLS 596 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~-~G~Ive-~G~~~eL~~ 596 (616)
|++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+.+.+. .||+|++++ +|++++ .|+|++-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999999876 469999999999885 599999998 899977 688888643
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.6e-37 Score=288.36 Aligned_cols=145 Identities=30% Similarity=0.389 Sum_probs=131.6
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS 452 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~ 452 (616)
.||+++|++ .+++++. |++++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 578899963 3688884 9999999999999999999999999999999999999999953 78999
Q ss_pred cCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007152 453 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILL 532 (616)
Q Consensus 453 Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ili 532 (616)
|++. ||||||||++||||++.+|++++
T Consensus 68 q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~lll 94 (177)
T cd03222 68 QYID-----------------------------------------------------LSGGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred ccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 8653 99999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 007152 533 LDEATSALDAESEYLVQDAMDSLM-K-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 586 (616)
Q Consensus 533 LDEpTSaLD~~te~~i~~~l~~~~-~-~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv 586 (616)
|||||++||+++.+.+.+.++++. + ++|+|+|||+++.++ .||+|++|+++-.+
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999998875 3 389999999999987 59999999987654
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.3e-36 Score=337.86 Aligned_cols=192 Identities=28% Similarity=0.335 Sum_probs=165.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-++++|++++|++ ..|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 5899999999963 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEccCCCc-CCccHHHHHhcCCCCCCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 449 SIVSQEPVL-FNCSIEENIAYGCDGKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g~~~~~~-~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+|+||++.+ ++.|++||+.++.. ..+ +....++++..++.+..++- -..||||||||++|||||++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~-----------~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLDKN-----------VKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHhCC-----------cccCCHHHHHHHHHHHHHhc
Confidence 999999875 56799999998632 222 34567788888876554433 35699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 590 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 590 (616)
+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++ ++...|+
T Consensus 471 ~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999998753 789999999999875 5999999964 8877776
No 346
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=284.36 Aligned_cols=204 Identities=28% Similarity=0.434 Sum_probs=173.8
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCc--C-Cc
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL--F-NC 460 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l--f-~~ 460 (616)
++++|+++||+|++|+++-|+|.||||||||++.|+|-..|++|+|+|||+|+..++....-..++-|+|||.. | +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999988999999999973 5 45
Q ss_pred cHHHHHhcCCCC----CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCc
Q 007152 461 SIEENIAYGCDG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 536 (616)
Q Consensus 461 TIreNi~~g~~~----~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEp 536 (616)
||.||+.++... ..+.. ...=+.....+.+..+|.|++-.++.+---|||||||-++|+-|-++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999997431 01110 011122233356788999999999888889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCch-hhhhcCEEEEEeCCEEEEec
Q 007152 537 TSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 537 TSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~-~l~~aD~Iivl~~G~Ive~G 589 (616)
|+||||.+...|++.=.+.- .+-|.++|||.++ .++.-+|.++|++|+|+-.=
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999998887655432 3569999999997 47889999999999998643
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.2e-36 Score=282.02 Aligned_cols=156 Identities=26% Similarity=0.339 Sum_probs=130.2
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHH
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 463 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIr 463 (616)
..++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457899999999999999999999999999999996 368999998752 221 2445888887
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEEeCcCCCCC
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSALD 541 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~--p~iliLDEpTSaLD 541 (616)
.++++..++.+. ........||||||||++||||++++ |+++||||||++||
T Consensus 68 ----------------~~~l~~~~L~~~----------~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ----------------LQFLIDVGLGYL----------TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ----------------HHHHHHcCCCcc----------ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 234444443221 14556678999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 542 AESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 542 ~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
+++.+.+.+.++++. .++|+|+|||+++.++.||+|++|++|+
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 999999999998875 5899999999999999999999996644
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-35 Score=335.31 Aligned_cols=201 Identities=21% Similarity=0.283 Sum_probs=158.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|++ +++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999964 369999999999999999999999999999999999999999999998842 478
Q ss_pred EEccCCCcCCccHHHHHhcCCC--------------------------------CCCCHHHHHHHHHHcCchHHHHcCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCD--------------------------------GKASSADIENAAKMANAHDFISNFPE 497 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~--------------------------------~~~~~~~i~~al~~a~l~~~i~~Lp~ 497 (616)
|++|++..+..|+.+++.-+.. ....++++.++++..|+.+
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~------- 140 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN------- 140 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc-------
Confidence 8888765555666655432100 0000122333333333321
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCE
Q 007152 498 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADT 576 (616)
Q Consensus 498 GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~ 576 (616)
......-..||||||||++|||||+.+|++|||||||++||+++...+.+.|++. +.|+|+|||+...+. .||+
T Consensus 141 ---~~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 141 ---EQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred ---hhhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCE
Confidence 1122334579999999999999999999999999999999999999999999876 579999999999886 5999
Q ss_pred EEEEeCCEEEE-ecChhHHhh
Q 007152 577 VAVVSDGEIVE-SGTHEELLS 596 (616)
Q Consensus 577 Iivl~~G~Ive-~G~~~eL~~ 596 (616)
|++|++|+++. .|++++...
T Consensus 216 i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 216 IIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 99999999974 788876654
No 349
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=3.7e-32 Score=279.54 Aligned_cols=505 Identities=18% Similarity=0.243 Sum_probs=340.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 45 LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVA 124 (616)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (616)
+..-.++.+.-..+++.+..+=|.++..+..... ......+..|+++ .+-..+.+..-.|+...++..+..
T Consensus 120 l~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~-----r~F~~~LlkW~li----aiPAtFvNS~Iryle~klaLafrt 190 (728)
T KOG0064|consen 120 LTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRG-----RQFLWDLLKWFLI----AIPASFVNSAIRYLESKLALAFRT 190 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhH-----HHHHHHHHHHHhh----hccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555566665543211 0111112223222 222333444444555555666666
Q ss_pred HHHHHHHHHHHcCCchhhcccCc-h---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---
Q 007152 125 RLRKNLFSHLINQEIAFYDVTRT-G---ELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLA--- 197 (616)
Q Consensus 125 ~lr~~~~~~l~~~~~~~~~~~~~-G---~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~--- 197 (616)
++....|+..+... .||.-.+. | ..=+.+++|+..+.+...+.+.++.-.++=++++...+.-.+...+.-.
T Consensus 191 rL~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~ 269 (728)
T KOG0064|consen 191 RLTRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITL 269 (728)
T ss_pred HHHHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhh
Confidence 66666666666555 44433222 2 2235689999999988888777777766666655555554433332221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 198 -LVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGL 276 (616)
Q Consensus 198 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (616)
..++.+...+.+.+..+.-++..+.....+.+...=+..+.+.++|-.|+..+.+.++.++..+.+........+...+
T Consensus 270 ~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~ 349 (728)
T KOG0064|consen 270 AGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLW 349 (728)
T ss_pred hhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222334455556667777777777888888888899999999999999999999999988888777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HhcCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 277 FFGGLNAASTLSVIVVVIYGANL------------TITGSMT--------PGALTSFILYSLTVGSSVSGLSSLYTVAMK 336 (616)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~g~~~------------v~~g~~s--------~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 336 (616)
+..+-+++.-- .|-|.-+ ...|... .-.+.+.-.++....+.+..+..++.++.+
T Consensus 350 YiMleqF~mKY-----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItq 424 (728)
T KOG0064|consen 350 YIMLEQFVMKY-----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQ 424 (728)
T ss_pred HHHHHHHHHHH-----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544321 1111111 1112110 233444556667777788888888888888
Q ss_pred HHHHHHHHHHHhcccCC-------------CCCC------CCCCCCC-----CCCCcEEEEeEEEECCCCCCCcceecee
Q 007152 337 AAGASRRVFQLLDRVSS-------------MPKS------GNQCPLG-----DQDGEVELDDVWFAYPSRPNHMVLKGIT 392 (616)
Q Consensus 337 ~~~~~~ri~~~l~~~~~-------------~~~~------~~~~~~~-----~~~~~I~~~~vsf~Y~~~~~~~vL~~is 392 (616)
....-.|+++.++.-.+ ..+. ....+.+ .....|.++||-.--|+. ..+...++
T Consensus 425 LaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Lt 502 (728)
T KOG0064|consen 425 LAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLT 502 (728)
T ss_pred HhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--ceeeccee
Confidence 88888888766532110 0000 0001111 112358999998777753 35789999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCC-
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD- 471 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~- 471 (616)
|+|++|..+.|.||||||||+|.++|.|++|.+.|...+-- +.+|-|+||.|+.=-||+||-|-|-+.
T Consensus 503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~ 571 (728)
T KOG0064|consen 503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSS 571 (728)
T ss_pred EEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcH
Confidence 99999999999999999999999999999999988876532 236999999999989999999988532
Q ss_pred -----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHH
Q 007152 472 -----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY 546 (616)
Q Consensus 472 -----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~ 546 (616)
..++|.++++.++.+.|+..+ +-..|+|.+- +----||||+|||+++||.+|++|..-+|||+|||+-.+-|.
T Consensus 572 e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~-dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~ 649 (728)
T KOG0064|consen 572 EQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVR-DWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEG 649 (728)
T ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhc-cHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHH
Confidence 247889999999999997554 4456666543 334569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEe
Q 007152 547 LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 547 ~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~ 581 (616)
.+.++.++. |-+.|-||||++..+.-.+.+-.|
T Consensus 650 ~i~~~ak~~--gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 650 KIFQAAKDA--GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred HHHHHHHhc--CceEEEeecCccHHHHHHHHHhcc
Confidence 999999875 789999999999988777766663
No 350
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.8e-35 Score=356.72 Aligned_cols=203 Identities=23% Similarity=0.277 Sum_probs=170.7
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC----CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY----DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN- 459 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~----~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~- 459 (616)
+++|+|+|+++++||.++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45899999999999999999999999999999999986 578999999999986554 456778999999988886
Q ss_pred ccHHHHHhcCC----CC----CCCHHHH-----HHHHHHcCchHHHHcCCCcccccccC-CCCCCChhHHHHHHHHHHHc
Q 007152 460 CSIEENIAYGC----DG----KASSADI-----ENAAKMANAHDFISNFPEKYQTFVGE-RGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 460 ~TIreNi~~g~----~~----~~~~~~i-----~~al~~a~l~~~i~~Lp~GldT~vge-~G~~LSGGQrQRlalARAll 525 (616)
-|++||+.|+. |. ..++++. .++++..++ .+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 59999998852 10 1233332 223444444 4456888885 45689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCch--hhhhcCEEEEEeCCEEEEecChhHHh
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLS--TVQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~--~l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999998763 789999999973 45679999999999999999998873
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=5.9e-35 Score=329.94 Aligned_cols=199 Identities=23% Similarity=0.403 Sum_probs=156.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. . .+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EE
Confidence 3899999999964 36999999999999999999999999999999999999999999999872 1 36
Q ss_pred EEEccCCCc-CCccHHHHHhcCCC-----------------CC----------------------CCHHHHHHHHHHcCc
Q 007152 449 SIVSQEPVL-FNCSIEENIAYGCD-----------------GK----------------------ASSADIENAAKMANA 488 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g~~-----------------~~----------------------~~~~~i~~al~~a~l 488 (616)
++++|++.. ..+|+.+++..+.. .+ ..++++.++++..++
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 778876642 23566665432110 00 001122233333222
Q ss_pred hHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 007152 489 HDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 568 (616)
Q Consensus 489 ~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 568 (616)
+ ....-..||||||||++|||||+.+|++|||||||++||+++...+.+.|+++ +.|+|+|||+.
T Consensus 149 -----------~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~ 213 (635)
T PRK11147 149 -----------D--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDR 213 (635)
T ss_pred -----------C--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 1 12334579999999999999999999999999999999999999999999887 36999999999
Q ss_pred hhhhh-cCEEEEEeCCEEEE-ecChhHHhh
Q 007152 569 STVQS-ADTVAVVSDGEIVE-SGTHEELLS 596 (616)
Q Consensus 569 ~~l~~-aD~Iivl~~G~Ive-~G~~~eL~~ 596 (616)
..+.. ||+|++|++|+++. .|++++.++
T Consensus 214 ~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 214 SFIRNMATRIVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred HHHHHhcCeEEEEECCEEEEecCCHHHHHH
Confidence 98865 99999999999985 699887654
No 352
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-35 Score=292.95 Aligned_cols=226 Identities=34% Similarity=0.493 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCC-CCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCCEEEECCEeCCCCCHH
Q 007152 369 EVELDDVWFAYPS-RPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----IKGKILLNGVPLVEISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~-~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----~~G~I~idg~~i~~~~~~ 442 (616)
-++++|+|+.|.. +....++++|||+|.+||++|+||+||||||--++.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788998877741 1245789999999999999999999999999999999999865 479999999999999988
Q ss_pred HHhc----ccEEEccCCCc-CC--ccH----HHHHhcCCC--CCCCHHHHHHHHHHcCchHH---HHcCCCcccccccCC
Q 007152 443 HLHR----KISIVSQEPVL-FN--CSI----EENIAYGCD--GKASSADIENAAKMANAHDF---ISNFPEKYQTFVGER 506 (616)
Q Consensus 443 ~~r~----~i~~v~Q~~~l-f~--~TI----reNi~~g~~--~~~~~~~i~~al~~a~l~~~---i~~Lp~GldT~vge~ 506 (616)
++|+ .|++++|||.- .| -|| .|-|.+-.. ..+-++++.+.++.+|+.+- +++.|
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yP---------- 155 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYP---------- 155 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCC----------
Confidence 8875 79999999962 22 144 445554321 12345678888899888653 44444
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDG 583 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G 583 (616)
..||||||||+.||-||..+|++||-||||.|||....+.|++-|+++. .+..+++|||+|..++. ||+|+||.+|
T Consensus 156 -HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 156 -HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred -cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 5799999999999999999999999999999999999999999998765 47899999999999876 9999999999
Q ss_pred EEEEecChhHHhhc-CChhHHHH
Q 007152 584 EIVESGTHEELLSK-GGVYTALV 605 (616)
Q Consensus 584 ~Ive~G~~~eL~~~-~~~y~~l~ 605 (616)
+|+|.|+.++|.+. ...|.++.
T Consensus 235 ~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 235 EIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred EEeecCcHHHHhhCCCChHHHHH
Confidence 99999999999975 34465543
No 353
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-35 Score=277.00 Aligned_cols=209 Identities=24% Similarity=0.380 Sum_probs=173.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHR 446 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~ 446 (616)
.-|+++||+++|.+ +++|+|||++|++||+-+|+|+||||||||+++++|.++|++|.+.+.|+..-.-+. .++|+
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 35999999999964 479999999999999999999999999999999999999999999999999988777 99999
Q ss_pred ccEEEccCCC---cCCccHHHHHhcCC------CC-CCCHHHH---HHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 447 KISIVSQEPV---LFNCSIEENIAYGC------DG-KASSADI---ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 447 ~i~~v~Q~~~---lf~~TIreNi~~g~------~~-~~~~~~i---~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
+||+|+-+-. .=+.+++|-+.=|. .. ++++++. ...++..++.+.. +..=..||-|
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la-----------~r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA-----------DRPFGSLSQG 175 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc-----------cCchhhcCHh
Confidence 9999986543 22456776654321 11 3455443 4445555555432 2233579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC---CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 589 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~---~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G 589 (616)
||||+-||||+.++|.+|||||||++||....+.+.+.+.++.. ..|+|+|||+.+.+. .+++++.+++|+++.+|
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999999999999999999988763 568999999999765 57999999999999887
Q ss_pred C
Q 007152 590 T 590 (616)
Q Consensus 590 ~ 590 (616)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 4
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.5e-35 Score=352.83 Aligned_cols=209 Identities=24% Similarity=0.403 Sum_probs=170.4
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-c
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-C 460 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 460 (616)
..+|+|+|++|+||+.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999987654 3778999999988775 5
Q ss_pred cHHHHHhcCCC----C-------CCCH----------HHH---HHHHHHcC------chHHHH--cCCCcccccccCC-C
Q 007152 461 SIEENIAYGCD----G-------KASS----------ADI---ENAAKMAN------AHDFIS--NFPEKYQTFVGER-G 507 (616)
Q Consensus 461 TIreNi~~g~~----~-------~~~~----------~~i---~~al~~a~------l~~~i~--~Lp~GldT~vge~-G 507 (616)
|++||+.|+.. . +.+. +++ .+++...+ .++.++ .|.+-.||.||+. -
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999998521 0 0011 111 11111111 112222 3455568999864 4
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCc--hhhhhcCEEEEEeCC
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRL--STVQSADTVAVVSDG 583 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl--~~l~~aD~Iivl~~G 583 (616)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++. .++|+|+++|++ +..+.+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6899999999999999999999999999999999999999999999885 378999999997 456889999999999
Q ss_pred EEEEecChhHHhh
Q 007152 584 EIVESGTHEELLS 596 (616)
Q Consensus 584 ~Ive~G~~~eL~~ 596 (616)
+++..|+.+++.+
T Consensus 415 ~ivy~G~~~~~~~ 427 (1470)
T PLN03140 415 QIVYQGPRDHILE 427 (1470)
T ss_pred eEEEeCCHHHHHH
Confidence 9999999998863
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.8e-35 Score=253.86 Aligned_cols=196 Identities=28% Similarity=0.410 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHHh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHLH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~~~~~~r 445 (616)
.+.++||+.+-|++ -.|.|+||+|.+||++-+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g~---cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCCc---eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 36789999888754 5899999999999999999999999999999999999885 79999999999987755 6
Q ss_pred cccEEEccCCCcCC-ccHHHHHhcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 446 RKISIVSQEPVLFN-CSIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~-~TIreNi~~g~~~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
+++|+.+||++||+ -+|-+||.|.-|.+. .......|++..+++.+..+.| .+||||||-|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 79999999999996 599999999977432 2334667889999999888887 5799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHH-H-hCCCeEEEEecCchhhhhcCEEEEE
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDS-L-MKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~-~-~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
-|+|+..|+.++||||+|.||..-...+.+-... . ..+--+|.|||++..++.-.||+.|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999877766665432 2 1478899999999988865565554
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.4e-35 Score=326.41 Aligned_cols=193 Identities=25% Similarity=0.357 Sum_probs=160.5
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCCCH
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEISH 441 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~-----------idg~~i~~~~~ 441 (616)
++++++|+. ...+|++++ ++++|+++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 448899963 236899999 8999999999999999999999999999999999998 99998875532
Q ss_pred HH--Hhcc----cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EH--LHRK----ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~--~r~~----i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
+- .+.. +.|++|.|.+|.+|++||+... + ..+++.++++..++.+.. |+.+ .+||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~~~~----~~LSgGe~ 218 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------DRDI----SELSGGEL 218 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------cCCh----hhCCHHHH
Confidence 21 1122 4556667778889999999753 1 245678888888775543 2333 46999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDG 583 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G 583 (616)
||++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999988668999999999998865 8999999873
No 357
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=273.02 Aligned_cols=217 Identities=25% Similarity=0.464 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.+++++|+.+|++ ..+++|+||++++|+..+++|+|||||||.+++|+|+++|++|+|.++|.+++ ...+.+|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~----~~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchh----hhhhhhc
Confidence 4789999999974 46999999999999999999999999999999999999999999999999886 3456799
Q ss_pred EEEccCCCcCC-ccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 449 SIVSQEPVLFN-CSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 449 ~~v~Q~~~lf~-~TIreNi~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
||+|-+--|+. -|+.|-|.|... ......++++-+ ..|++++.-. -.-...-..||-|..|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~-----~~wLer~~i~--~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL-----QAWLERLEIV--GKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHH-----HHHHHhcccc--ccccchHHHhhhhhhHHHHHHHHHhc
Confidence 99999999996 599999998642 134555554433 3466665421 11123446799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcCC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKGG 599 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~~ 599 (616)
+|+++|||||+|+|||.+.+.+.+.+.+++ +|.|+|+.|||++-++. ||+++.|++|+-|-+|+.++..+..|
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999998876 69999999999999865 99999999999999999998877443
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.4e-34 Score=310.35 Aligned_cols=209 Identities=30% Similarity=0.441 Sum_probs=166.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++|++++|++ +++++|+||++.+|++|||||+||||||||+|+|+|...|++|+|...+. -.+
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4899999999964 47999999999999999999999999999999999999999999998772 169
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCCCCC--HHHHHHHHH------------------H-------cCchHHHHcCCCcc-
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDGKAS--SADIENAAK------------------M-------ANAHDFISNFPEKY- 499 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~~~~--~~~i~~al~------------------~-------a~l~~~i~~Lp~Gl- 499 (616)
+|++|++.+.++ |++|.+..+.. ... ..+++++.. . +.+...+..|.---
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~ 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFG-ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence 999999999965 99999998754 111 111111110 0 11111222221100
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEE
Q 007152 500 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVA 578 (616)
Q Consensus 500 dT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Ii 578 (616)
++++ .+||||||-|++|||||+.+||+|+|||||++||.++-.-+.+-|.+. ++ |+|+|||+-+.+.. |++|+
T Consensus 148 ~~~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~ 221 (530)
T COG0488 148 DRPV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHIL 221 (530)
T ss_pred cCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheE
Confidence 3444 469999999999999999999999999999999999999999999865 45 99999999999976 89999
Q ss_pred EEeCCEEEE-ecChhHHhhcC
Q 007152 579 VVSDGEIVE-SGTHEELLSKG 598 (616)
Q Consensus 579 vl~~G~Ive-~G~~~eL~~~~ 598 (616)
.++.|++.. .|.|+.-++..
T Consensus 222 ~ld~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 222 ELDRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred EecCCceeEecCCHHHHHHHH
Confidence 999998864 78887766543
No 359
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-34 Score=258.78 Aligned_cols=213 Identities=27% Similarity=0.480 Sum_probs=173.3
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC-cCC----
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV-LFN---- 459 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~-lf~---- 459 (616)
..+.+.|||+.++|+.+||+|.+|||||||+|.|+|..+|++|+|++||.++.-=+.....++|-+++|||. -||
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 347899999999999999999999999999999999999999999999999976666666688999999985 233
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007152 460 ------CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLL 533 (616)
Q Consensus 460 ------~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliL 533 (616)
+.++-|=.+. | +...+++.+.++.+||. |+--+-. -..||-|||||+||||||.-+|+|+|-
T Consensus 106 iGqiLd~PL~l~T~~~-~-~~R~~~i~~TL~~VGL~------Pdhan~~----~~~la~~QKQRVaLARALIL~P~iIIa 173 (267)
T COG4167 106 IGQILDFPLRLNTDLE-P-EQRRKQIFETLRMVGLL------PDHANYY----PHMLAPGQKQRVALARALILRPKIIIA 173 (267)
T ss_pred hhhHhcchhhhcccCC-h-HHHHHHHHHHHHHhccC------ccccccc----hhhcCchhHHHHHHHHHHhcCCcEEEe
Confidence 3333333332 1 23456788889988874 4322211 357999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcC--ChhHHHHHHH
Q 007152 534 DEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG--GVYTALVKRQ 608 (616)
Q Consensus 534 DEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~--~~y~~l~~~~ 608 (616)
||+..+||..-...+.+-..++. .|-.-|.|+..+-.+++ +|.|+||++|+++|.|+..|+++.. ..-+++++..
T Consensus 174 DeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHH
Confidence 99999999998888887765443 47889999999999998 8999999999999999999998753 3345666554
Q ss_pred h
Q 007152 609 L 609 (616)
Q Consensus 609 ~ 609 (616)
-
T Consensus 254 F 254 (267)
T COG4167 254 F 254 (267)
T ss_pred h
Confidence 3
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=263.41 Aligned_cols=216 Identities=29% Similarity=0.495 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-h
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-H 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~-r 445 (616)
.++++|++.+-.+. +.+|+++||+|++||+.||.||||||||||.+.|+|. |++++|+|++||.||.++++++. |
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999988642 3799999999999999999999999999999999998 68899999999999999998775 5
Q ss_pred cccEEEccCCCcCCc-cHHHHHhcCCCC--C------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 446 RKISIVSQEPVLFNC-SIEENIAYGCDG--K------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-TIreNi~~g~~~--~------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.-|...+|.|.=++| |+.+=+..+... . ...++++++++..++++.. ++-.|+ ..+|||||.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHH
Confidence 569999999999988 888877754321 0 1256788899999988732 222344 359999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhc--CEEEEEeCCEEEEecChhH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA--DTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~a--D~Iivl~~G~Ive~G~~~e 593 (616)
|.-|+-+++-+|++.|||||=|+||-.+-+.|.+.++.++ +++++++|||.-..+.+. |++.||-+|+|+..|.. |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999999887 688999999999999887 99999999999999999 7
Q ss_pred Hhh
Q 007152 594 LLS 596 (616)
Q Consensus 594 L~~ 596 (616)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 765
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=6.3e-34 Score=321.74 Aligned_cols=222 Identities=19% Similarity=0.276 Sum_probs=163.2
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCCEEEECCEeCCC--CCH-
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY---DPIKGKILLNGVPLVE--ISH- 441 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~---~~~~G~I~idg~~i~~--~~~- 441 (616)
..|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999964 35999999999999999999999999999999999864 5889999876554321 111
Q ss_pred -----------HHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCH----HHHHHHHHHcCch----------HHHHcCC
Q 007152 442 -----------EHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASS----ADIENAAKMANAH----------DFISNFP 496 (616)
Q Consensus 442 -----------~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~----~~i~~al~~a~l~----------~~i~~Lp 496 (616)
..+++.+++++|++.+...+..+|.........+. +++.++++..++. ..+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 12355689999988765545555542211000111 2333333333221 111111
Q ss_pred Cccc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-c
Q 007152 497 EKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-A 574 (616)
Q Consensus 497 ~Gld-T~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-a 574 (616)
|++ ......-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 221 0111223579999999999999999999999999999999999999999999886 6899999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhh
Q 007152 575 DTVAVVSDGEIV-ESGTHEELLS 596 (616)
Q Consensus 575 D~Iivl~~G~Iv-e~G~~~eL~~ 596 (616)
|+|++|++|+++ ..|++++..+
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 5788876544
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.5e-33 Score=313.93 Aligned_cols=219 Identities=30% Similarity=0.485 Sum_probs=188.8
Q ss_pred CcEEEEeEEEECCCCC--CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCCEEEECCEeCCCCCHH
Q 007152 368 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP---IKGKILLNGVPLVEISHE 442 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~---~~G~I~idg~~i~~~~~~ 442 (616)
..++++|+++.-++.+ .+.+|+|||.+++|||..||.||||||||||++.|+|..++ .+|+|++||. ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 4689999999887542 46799999999999999999999999999999999999975 7899999994 45688
Q ss_pred HHhcccEEEccCCCcCC-ccHHHHHhcCC----CCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccC-CCCCCCh
Q 007152 443 HLHRKISIVSQEPVLFN-CSIEENIAYGC----DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGE-RGVRLSG 512 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~-~TIreNi~~g~----~~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge-~G~~LSG 512 (616)
.+++..|||+||..+++ -||+|++.|.. |.+.+ +++++++++.-++.+- -||.||. +++.+||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-------~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-------ADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-------ccceecCCCCCcccc
Confidence 99999999999999986 59999999864 22223 3446666666666522 4788873 4578999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh--hhhcCEEEEEeCCEEEEec
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~--l~~aD~Iivl~~G~Ive~G 589 (616)
|||+|++||--++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999875 69999999999974 7889999999999999999
Q ss_pred ChhHHhh
Q 007152 590 THEELLS 596 (616)
Q Consensus 590 ~~~eL~~ 596 (616)
+.+++.+
T Consensus 254 ~~~~~~~ 260 (613)
T KOG0061|consen 254 SPRELLE 260 (613)
T ss_pred CHHHHHH
Confidence 9888754
No 363
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.9e-33 Score=265.46 Aligned_cols=189 Identities=28% Similarity=0.471 Sum_probs=161.2
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC--cc
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN--CS 461 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~--~T 461 (616)
+.++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++| .++++---..=|+ -|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccc
Confidence 34789999999999999999999999999999999999999999999999 4554444333343 48
Q ss_pred HHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCc
Q 007152 462 IEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 536 (616)
Q Consensus 462 IreNi~~g~-----~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEp 536 (616)
-||||.+-. ..+..++.+.+..+-+.|.+|++ .| -.+.|-|.+-|||+|=|.--+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-~P----------vktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-QP----------VKTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-Cc----------hhhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 899998732 11224566788889999999974 34 368999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH-hCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 007152 537 TSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 537 TSaLD~~te~~i~~~l~~~-~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
.|..|+.=.++=.+.++++ .+++|+|+|||+++.++. ||++++|++|+|+..|+.+|..+
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999666666777777 678999999999999865 99999999999999999999875
No 364
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=3.5e-34 Score=260.78 Aligned_cols=136 Identities=43% Similarity=0.705 Sum_probs=126.5
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHHHHH
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENI 466 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIreNi 466 (616)
|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.+||.++...+...+|+.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987 49999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC
Q 007152 467 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 538 (616)
Q Consensus 467 ~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS 538 (616)
..+++++++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 24667899999988766 35677888889999999999999999999999999999997
No 365
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4e-33 Score=253.91 Aligned_cols=215 Identities=25% Similarity=0.436 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC-EeCCCCCHHHH-hc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG-VPLVEISHEHL-HR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg-~~i~~~~~~~~-r~ 446 (616)
.++++|||+++++- .+|+|+||++.+||.-+|+||||+||||++..|.|--+|++|+++++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 47899999999754 589999999999999999999999999999999999999999999999 99999997766 45
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCCCCC-------------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGCDGK-------------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~~~~-------------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
-||-=+|.|..|.. |++||+-+....+ ...+++.+++...+|.+.-... ...||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~-----------A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL-----------AALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh-----------hhhhcc
Confidence 69999999999965 9999998764311 1234688888888887664432 467999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecCh
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~ 591 (616)
||||++-|+--+..+|++|+||||++++-.+.....-+-++.+.+.+++++|-|++..++. ||+|-||+.|.+..+|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999555444566778888889999999999999865 999999999999999999
Q ss_pred hHHhhc
Q 007152 592 EELLSK 597 (616)
Q Consensus 592 ~eL~~~ 597 (616)
+|+-++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 997654
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=290.49 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=176.5
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
..-++++|++++|++. +++++++||.|++|+++|||||||+|||||+|+|+|...|.+|+|.++-. +
T Consensus 319 ~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-v---------- 385 (530)
T COG0488 319 KLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-V---------- 385 (530)
T ss_pred CeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-e----------
Confidence 3468999999999753 57999999999999999999999999999999999999999999998652 2
Q ss_pred ccEEEccCC-CcC-CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 447 KISIVSQEP-VLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 447 ~i~~v~Q~~-~lf-~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
++||.+|+. .++ +.|+-|++.-..| +..+.+++..|...++...-.. ++ -..||||||-|+.||+.+
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~~------~~----v~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQE------KP----VGVLSGGEKARLLLAKLL 454 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHHh------Cc----hhhcCHhHHHHHHHHHHh
Confidence 699999998 444 4499999998776 4457889999999888654332 22 356999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEe-cChhHHhhc
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES-GTHEELLSK 597 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~-G~~~eL~~~ 597 (616)
+.+|.+|||||||.+||.+|-..+.++|.+. .-|+|+|||+...++. |++|+.+++ ++.+. |+|++-.+.
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999999999999999887 4699999999999976 999999998 77775 888876654
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.98 E-value=4.5e-32 Score=267.71 Aligned_cols=191 Identities=23% Similarity=0.293 Sum_probs=128.9
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHH-HHHHcCCCCCCCEEEECC-------EeCCCC---CHHHHhc-ccEEE
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIA-NLIERFYDPIKGKILLNG-------VPLVEI---SHEHLHR-KISIV 451 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~-~lL~g~~~~~~G~I~idg-------~~i~~~---~~~~~r~-~i~~v 451 (616)
+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+.. ..+..+ ....++. ...+.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 34699999999999999999999999999996 4443 134332210 011011 1111222 23444
Q ss_pred ccCCC-cCC--cc---HHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 452 SQEPV-LFN--CS---IEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 452 ~Q~~~-lf~--~T---IreNi~~g~~--~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
.|++. .++ .+ +.+...+... ......+..+.++..++.+. ........||||||||++||||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~lara 151 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAPTLSGGEAQRIRLATQ 151 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccCcCCHHHHHHHHHHHH
Confidence 45443 211 12 2222211100 01111222344444443221 2344567899999999999999
Q ss_pred HccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEec
Q 007152 524 LMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESG 589 (616)
Q Consensus 524 ll~~p--~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~~G~Ive~G 589 (616)
++++| +++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.||+|++| ++|+|+++|
T Consensus 152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99998 5999999999999999999999998764 578999999999999999999999 999999987
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.1e-31 Score=267.62 Aligned_cols=195 Identities=25% Similarity=0.369 Sum_probs=147.3
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH-----c-CC----CCCCC-----------EEEECCEeCCCCCH---
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-----R-FY----DPIKG-----------KILLNGVPLVEISH--- 441 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~-----g-~~----~~~~G-----------~I~idg~~i~~~~~--- 441 (616)
..|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ .|.+|..++..-+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3599999999999999999999999999998653 1 11 12222 46777766643221
Q ss_pred -------HHHhc----------------ccEEEccCCCc-CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCC
Q 007152 442 -------EHLHR----------------KISIVSQEPVL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPE 497 (616)
Q Consensus 442 -------~~~r~----------------~i~~v~Q~~~l-f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~ 497 (616)
+.+|+ .+.|..++... .+-|+.||+.|... ....++..++++..++.+.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~-~~~~~~~~~~L~~vgL~~l------ 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFEN-IPKIARKLQTLCDVGLGYI------ 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHh-hhhHHHHHHHHHHcCCchh------
Confidence 11121 14455555543 45688888887643 2223445555555555332
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh
Q 007152 498 KYQTFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 573 (616)
Q Consensus 498 GldT~vge~G~~LSGGQrQRlalARAll~~---p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~ 573 (616)
..++...+|||||+||++|||+|.++ |+++||||||++||+++.+.+.+.++++. ++.|+|+|||+++.++.
T Consensus 162 ----~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 162 ----KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred ----hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 24666789999999999999999996 79999999999999999999999998876 47899999999999999
Q ss_pred cCEEEEE------eCCEEEEecCh
Q 007152 574 ADTVAVV------SDGEIVESGTH 591 (616)
Q Consensus 574 aD~Iivl------~~G~Ive~G~~ 591 (616)
||+|++| ++|+|+++|++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999 89999999974
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-31 Score=244.39 Aligned_cols=189 Identities=24% Similarity=0.434 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
++.+|+++.-+ +..++.++||++.+||.+-|+||||||||||+++|+|+.+|++|+|+++|.+++... +..++.+.
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 34566766543 457999999999999999999999999999999999999999999999999987654 44578899
Q ss_pred EEccCCCcC-CccHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 450 IVSQEPVLF-NCSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 450 ~v~Q~~~lf-~~TIreNi~~g~~--~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|+.-.+-+= .-|+.||+.|... ...+++.+++|+..++|.++ ..+|- .+||-||+.|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~----------~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPV----------GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccch----------hhcchhHHHHHHHHHHHcC
Confidence 998888875 4699999999864 11357889999999999876 44553 4699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 573 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~ 573 (616)
.+|++||||||++||.+.+..+-.-+.... +|-.||..||....++.
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999988886554 67789999999876543
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8.8e-32 Score=257.58 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=162.5
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc-cCCCc-----CC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS-QEPVL-----FN 459 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~-Q~~~l-----f~ 459 (616)
++.+||||+||||+.++++|+|||||||++|+|.|+..|++|.|.++|.+...= .+++-+++++|. |...+ -.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechhh
Confidence 578999999999999999999999999999999999999999999999887653 344444555443 33222 12
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCC
Q 007152 460 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 539 (616)
Q Consensus 460 ~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSa 539 (616)
+|++=|=... +..+++..+-+.. +++-| +++..+-..-..||=|||-|.-||-||+++|+||.|||||=+
T Consensus 117 ds~~v~~~Iy---~Ipd~~F~~r~~~-----l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 117 DSLEVLKLIY---EIPDDEFAERLDF-----LTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhHHHHHHHH---hCCHHHHHHHHHH-----HHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 3333332222 3445554443221 22222 345555566788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcCChhHHH
Q 007152 540 LDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 604 (616)
Q Consensus 540 LD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l 604 (616)
||..+...|.+.+++.. .+.|++..||.++-+ ..||||+.+++|+++..|+.++|.+.-+.|+++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 99999999999998653 588999999999976 569999999999999999999999887776543
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.6e-31 Score=235.26 Aligned_cols=225 Identities=27% Similarity=0.443 Sum_probs=173.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC-----EeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG-----VPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg-----~~i~~~~~~~ 443 (616)
-++++++|..|.+. .--+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47889999999754 357999999999999999999999999999999999999999999965 4555666555
Q ss_pred Hh----cccEEEccCCC--c-CCccHHHHHh-----cCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCC
Q 007152 444 LH----RKISIVSQEPV--L-FNCSIEENIA-----YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 444 ~r----~~i~~v~Q~~~--l-f~~TIreNi~-----~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LS 511 (616)
.| .--|+|.|+|- | ..-|---||- .|.. .+ -.+++. ..+|++..+-. .+.+.+....+|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-HY--G~iR~~-----a~~WL~~VEI~-~~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-HY--GNIRAE-----AQDWLEEVEID-LDRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-hh--hhHHHH-----HHHHHHhcccC-cccccCcccccc
Confidence 44 45799999994 1 1111112221 0100 01 112221 22455544322 245666778999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES 588 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~ 588 (616)
||.+||+-|||-|...|.++.+||||-+||..-.+++++.++.+-. +-.+++|||++...+- +||..||++|+++|.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999987753 6689999999999875 999999999999999
Q ss_pred cChhHHhhc-CChhHHHH
Q 007152 589 GTHEELLSK-GGVYTALV 605 (616)
Q Consensus 589 G~~~eL~~~-~~~y~~l~ 605 (616)
|-.+..+.. ...|.+++
T Consensus 234 GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred ccccccccCCCCchHHHH
Confidence 988887753 55577665
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=5.1e-31 Score=254.13 Aligned_cols=164 Identities=25% Similarity=0.328 Sum_probs=134.7
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---------CEEEECCEeCCCCCHHHHhcccEEEccCCCcCC
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---------GKILLNGVPLVEISHEHLHRKISIVSQEPVLFN 459 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~---------G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~ 459 (616)
+++++++++| +++|+||||||||||+++|.|+.+|.. |++.++|.+... ...++++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 468888877654 22467899999999988
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeC
Q 007152 460 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDE 535 (616)
Q Consensus 460 ~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll----~~p~iliLDE 535 (616)
++. ...+++.++++. ++-.+. ....||||||||++|||++. ++|++++|||
T Consensus 89 --------~~~---~~~~~~~~~l~~----------~~~~~~----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 --------YSI---ISQGDVSEIIEA----------PGKKVQ----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred --------eeE---EehhhHHHHHhC----------CCcccc----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 321 124456666665 111222 34579999999999999986 5679999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 536 ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 536 pTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
||++||+.+...+.+.|+++.++.|+|+|||+++.++.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999999998778999999999999999999999853
No 373
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3e-30 Score=229.90 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=154.4
Q ss_pred cEEEEeEEEECC----CCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC--C--EeCCCCC
Q 007152 369 EVELDDVWFAYP----SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN--G--VPLVEIS 440 (616)
Q Consensus 369 ~I~~~~vsf~Y~----~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id--g--~~i~~~~ 440 (616)
.+.++||+.++. ++-.-||++|+||+++.||++++=||||||||||++.|-+-|.|++|+|.+. | +|+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367778765542 2223479999999999999999999999999999999999999999999983 2 3554545
Q ss_pred HHH----HhcccEEEccCCCcCCc-----cHHHHH-hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 441 HEH----LHRKISIVSQEPVLFNC-----SIEENI-AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 441 ~~~----~r~~i~~v~Q~~~lf~~-----TIreNi-~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+.. .|+.||||+|---..+. -+.|-+ ..|-|.+.-.++....+...++.+-+=+|| ..++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 433 35679999996443321 223322 223221112233455566666666665665 3789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEe
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVS 581 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~ 581 (616)
||||+||+.|||+|.-+-|||+|||||++||+.+.+.+.+-|++.+ +|..+|=|=|+-+.-+. |||++-|.
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999998765 68899999999887655 89998874
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=8.6e-30 Score=255.12 Aligned_cols=192 Identities=23% Similarity=0.261 Sum_probs=140.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc----------------CCCCCCC-----
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER----------------FYDPIKG----- 427 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g----------------~~~~~~G----- 427 (616)
.|+++|.- +|.+ ..++++++ |++++|+||||||||||+++|++ +..+.+|
T Consensus 3 ~i~~~nfk-sy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGFK-SYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCcc-Cccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 46666641 2542 24677776 89999999999999999999984 4444455
Q ss_pred ---EEEECCEeCCC-C--CHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHH--HcCCCcc
Q 007152 428 ---KILLNGVPLVE-I--SHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI--SNFPEKY 499 (616)
Q Consensus 428 ---~I~idg~~i~~-~--~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i--~~Lp~Gl 499 (616)
+|.+++.+-.. + ....+++.++++||++.+++ ...+.++++.++..+++.+.- ..+|+|.
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~------------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~ 141 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK------------KNVTKNDVMNLLESAGFSRSNPYYIVPQGK 141 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC------------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCc
Confidence 55555432110 0 12234566777777765533 135677888888888775421 0123333
Q ss_pred c-------ccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 007152 500 Q-------TFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 568 (616)
Q Consensus 500 d-------T~vge~G~~LSGGQrQRlalARAll----~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 568 (616)
. ....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+.
T Consensus 142 i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~ 221 (243)
T cd03272 142 INSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP 221 (243)
T ss_pred hHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 2 2235678899999999999999996 4689999999999999999999999999987788999999999
Q ss_pred hhhhhcCEEEEEe
Q 007152 569 STVQSADTVAVVS 581 (616)
Q Consensus 569 ~~l~~aD~Iivl~ 581 (616)
+..+.||+|++|+
T Consensus 222 ~~~~~~d~i~~l~ 234 (243)
T cd03272 222 ELLEVADKFYGVK 234 (243)
T ss_pred HHHhhCCEEEEEE
Confidence 9999999999985
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=8.3e-30 Score=249.55 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=144.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEe-CCCEEEEECCCCCcHHHHHHHHHc-CCCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLL-SGSKIALVGPSGGGKSTIANLIER-FYDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~-~G~~vaIvG~sGsGKSTL~~lL~g-~~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
.|+++|+. +|.+. ++++|+.. +|++++|+|+||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999987 66432 46777654 599999999999999999999994 666666666544 2233445556677
Q ss_pred ccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCc-ccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 447 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK-YQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~G-ldT~vge~G~~LSGGQrQRlalARAll 525 (616)
.|++++|++.- ...+..+. ..+.+++.+... ++.| +++.+.....+|||||+||++||||+.
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~---gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSR---GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEEEEEECCe----EEEEEEec---CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHH
Confidence 89999999843 22233332 345555444321 2222 455556677899999999999999997
Q ss_pred c----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 007152 526 M----------NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGEI 585 (616)
Q Consensus 526 ~----------~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~~-aD~Iivl~~G~I 585 (616)
. +|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.++. ||+++++++|..
T Consensus 140 ~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 140 LSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 4 6789999999999999999999999988864 7899999999998755 799999998853
No 376
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.96 E-value=1.2e-25 Score=226.48 Aligned_cols=273 Identities=27% Similarity=0.456 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 46 IIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAR 125 (616)
Q Consensus 46 ~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (616)
++++++.++..++.++.|++++.++|.+...... .....+.+.++++++.++...+.....+...+.+.++..+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD------NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKD 75 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999986554321 0112222333333444455556666667778899999999
Q ss_pred HHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007152 126 LRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAIS 205 (616)
Q Consensus 126 lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~ 205 (616)
+|.++++|+++.|.++|+++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|+++++++++.|+..
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~ 155 (275)
T PF00664_consen 76 LRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLF 155 (275)
T ss_dssp HHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 206 VAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAAS 285 (616)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (616)
++...+.++.++..++..+..++..+.+.|.++|+++||+||.|+++.+++.+..++..+...+..+..+.......++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 156 LISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 007152 286 TLSVIVVVIYGANL-TITGSMTPGALTSFILYSLTVGSSV 324 (616)
Q Consensus 286 ~~~~~~~~~~g~~~-v~~g~~s~g~l~~~~~~~~~~~~~~ 324 (616)
.+..++++++|+++ +.+|.+|+|.++++..+...+..|+
T Consensus 236 ~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 236 YLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99899999999999 9999999999999999999998885
No 377
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=6.9e-27 Score=271.56 Aligned_cols=220 Identities=20% Similarity=0.390 Sum_probs=191.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC-CHHHHhc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI-SHEHLHR 446 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~-~~~~~r~ 446 (616)
..+..+|++..|+... .+.+++|+.+++||+.|+-|+|||||||.+|++.|..+|++|++.++|.++..- +.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998542 289999999999999999999999999999999999999999999999999754 4556999
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCC-----CCCCC-HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGC-----DGKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~-----~~~~~-~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
++||+||+..|++. |.||.+.+.. | ..+ ++.+...|+..++.+.... + -.++|||+|.||+
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~-~~di~~~v~~ll~~~~L~~~~~~-------~----~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLP-RSDIGSAIEKLLRLVGLGPYANK-------Q----VRTYSGGNKRRLS 708 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHcCChhhhcc-------c----hhhCCCcchhhHH
Confidence 99999999999875 9999998753 2 112 2336777888887766543 2 3579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC-CeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG-RTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~-~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+|-|++.+|++++|||||+++||.+++.+.+.|.+..++ +.+|+.||.++..+. |||+.+|.+|++..-|+.++|..+
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999988764 499999999999987 999999999999999999999876
Q ss_pred CChh
Q 007152 598 GGVY 601 (616)
Q Consensus 598 ~~~y 601 (616)
-|.+
T Consensus 789 fG~g 792 (885)
T KOG0059|consen 789 YGSG 792 (885)
T ss_pred cCCc
Confidence 5443
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=6.5e-29 Score=222.30 Aligned_cols=209 Identities=28% Similarity=0.428 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
+.++||+..- -|-.+|.++..||..=+|||+|||||||+..++|+. |.+|+|.++|.|++.++..++-++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5677776531 366789999999999999999999999999999996 77999999999999999999999999
Q ss_pred EEccCC-CcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc--
Q 007152 450 IVSQEP-VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM-- 526 (616)
Q Consensus 450 ~v~Q~~-~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~-- 526 (616)
|..|+- ..|.-.|-.-+++..|.+.--.++.++|++.+++|-+ |..-..|||||+||+-+|-.++.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL-----------~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchh-----------hhhhhhcCcccceeeEEeEEEEEec
Confidence 998854 4788899999999877433345577777777666543 34456899999999999998885
Q ss_pred ---CC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCch-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 527 ---NP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 527 ---~p--~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~-~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|| ++|++|||-++||...+..+.+-|.+++ .|.|+|+.+|++. ++++||+++.+..|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 33 6999999999999999998888888776 6899999999996 8999999999999999999999998764
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1e-27 Score=240.87 Aligned_cols=187 Identities=19% Similarity=0.225 Sum_probs=141.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCC-CCEEEECCE-eCCCCC--HHHHhcccEEEccCCCc---------C-CccHH
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGV-PLVEIS--HEHLHRKISIVSQEPVL---------F-NCSIE 463 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~-~G~I~idg~-~i~~~~--~~~~r~~i~~v~Q~~~l---------f-~~TIr 463 (616)
..+++||||||||||||+++|++++.|+ .|+++..|. |+-... ....+..+++++|++.. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 468888876 432111 12234589999999632 1 35888
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHcCch--HHHHcCCCcc-------cccccCCCCCCChhHHHHHHHHHHHc--
Q 007152 464 ENIAYGCD-------GKASSADIENAAKMANAH--DFISNFPEKY-------QTFVGERGVRLSGGQKQRVAIARALM-- 525 (616)
Q Consensus 464 eNi~~g~~-------~~~~~~~i~~al~~a~l~--~~i~~Lp~Gl-------dT~vge~G~~LSGGQrQRlalARAll-- 525 (616)
+|+..+.. .....+++.++++.+++. +.-.-+|+|- ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88765431 123457888899998874 0000011110 01233456789999999999999997
Q ss_pred --cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEe--CCE
Q 007152 526 --MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS--DGE 584 (616)
Q Consensus 526 --~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~--~G~ 584 (616)
.+|+++||||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.++.||+|+-+. +|.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 57899999999999999999999999998888899999999999999999998763 554
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.95 E-value=6.6e-28 Score=250.20 Aligned_cols=199 Identities=26% Similarity=0.392 Sum_probs=170.1
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
.-|.++||+|.|++.+ .++++++|-|.+++++|+|||||+|||||+|++.|...|..|.|.-.-. ..
T Consensus 388 pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 3589999999998653 7999999999999999999999999999999999999999999865432 24
Q ss_pred cEEEccC---CCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 448 ISIVSQE---PVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 448 i~~v~Q~---~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
+++-.|. ..-++-|.-|++.---++.-..++++..+..+|+....+.-|- .+||+|||.|++.||..
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHH
Confidence 5555553 3457888999987655523567889999999999877666663 57999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEE-ecCh
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE-SGTH 591 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive-~G~~ 591 (616)
+++|.+|||||||++||.++-....++|.++ .-++|+|||+...+.+ |++|++++||++.. .|.+
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999999999999999887 4689999999999977 89999999999865 4544
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=2e-27 Score=230.54 Aligned_cols=162 Identities=23% Similarity=0.290 Sum_probs=129.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHH----cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC-----CcCCc-c
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIE----RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP-----VLFNC-S 461 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~----g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~-----~lf~~-T 461 (616)
++++.+| +++|+||||||||||++.|. |...|..|.+..+... +.....+..+++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~---i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKL---IREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHH---HhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3556677 99999999999999999994 9988888877622222 22234567899999998 33332 9
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH------HHHHHHHccCCCEEEEeC
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR------VAIARALMMNPRILLLDE 535 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR------lalARAll~~p~iliLDE 535 (616)
+.||+.++ + ++++.+.+ .+....||+||+|| ++||||+..+|++++|||
T Consensus 93 ~~~~~~~~-~----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 93 ILENVIFC-H----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred Hhhceeee-c----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 99999875 2 23333322 34457899999996 799999999999999999
Q ss_pred cCCCCCHHHHH-HHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeC
Q 007152 536 ATSALDAESEY-LVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 536 pTSaLD~~te~-~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
||++||+.+.. .+.+.|+++.+ ++|+|+|||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999998 99999988765 6899999999999999999999964
No 382
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.2e-27 Score=233.23 Aligned_cols=184 Identities=20% Similarity=0.261 Sum_probs=139.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r-~~ 447 (616)
.|+++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. +++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 57788875 6653 358899987 899999999999999999997 3355433 2233 57
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHH--HH---HHH----cCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIE--NA---AKM----ANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~--~a---l~~----a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
+++++|+..+++. |.++++.+... ....+.++ .. ... .+-...+..||++.++.++ .||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHHHH
Confidence 9999999887764 78888777642 11111000 00 000 0111134457887777654 699999999
Q ss_pred HHHHHHHcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEe
Q 007152 518 VAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 518 lalARAll~----~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~ 581 (616)
++||||+.. +|++++|||||++||+.+...+.+.++++.++.|+|+|||+.+..+.||+|++|.
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 999999963 5799999999999999999999999999877889999999999999999999995
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=2.3e-26 Score=263.95 Aligned_cols=104 Identities=35% Similarity=0.526 Sum_probs=94.1
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh
Q 007152 498 KYQT-FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 572 (616)
Q Consensus 498 GldT-~vge~G~~LSGGQrQRlalARAll~~p---~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~ 572 (616)
|++. .++....+|||||+||++|||+|+++| +++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 367778899999999999999999999 9999999999999999999999998875 5789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhcCChh
Q 007152 573 SADTVAVV------SDGEIVESGTHEELLSKGGVY 601 (616)
Q Consensus 573 ~aD~Iivl------~~G~Ive~G~~~eL~~~~~~y 601 (616)
.||+|++| ++|+|++.|+++++.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999999766544
No 384
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=2.3e-26 Score=274.08 Aligned_cols=213 Identities=24% Similarity=0.337 Sum_probs=155.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHH---------HHHcCCCCCCC--------EEEE
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIAN---------LIERFYDPIKG--------KILL 431 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~---------lL~g~~~~~~G--------~I~i 431 (616)
.++++|++. ..|+|+||+|++|++++|+|+||||||||++ .|.|...+..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478888752 2699999999999999999999999999999 56664333211 2355
Q ss_pred CCEeCCCCCH----------HHHhc---------cc-----EEEccC------------------C--------------
Q 007152 432 NGVPLVEISH----------EHLHR---------KI-----SIVSQE------------------P-------------- 455 (616)
Q Consensus 432 dg~~i~~~~~----------~~~r~---------~i-----~~v~Q~------------------~-------------- 455 (616)
|-.++..-+. +++|+ .. .+.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 5544432111 14441 11 123332 1
Q ss_pred ------CcCC-ccHHHHHhcCCCCCC-----CHHHHHHHHHHcCchHHHHcCCCccccc-ccCCCCCCChhHHHHHHHHH
Q 007152 456 ------VLFN-CSIEENIAYGCDGKA-----SSADIENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 456 ------~lf~-~TIreNi~~g~~~~~-----~~~~i~~al~~a~l~~~i~~Lp~GldT~-vge~G~~LSGGQrQRlalAR 522 (616)
..+. -||.||+.|+.. ++ +.+++.+.++ .++.+ |++.. .++...+|||||+||++|||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~-ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAY-EAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAY 822 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHH-HHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHH
Confidence 1233 389999988743 11 1233333332 12222 55554 57777899999999999999
Q ss_pred HHc---cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEe------CCEEEEecChh
Q 007152 523 ALM---MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVS------DGEIVESGTHE 592 (616)
Q Consensus 523 All---~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~------~G~Ive~G~~~ 592 (616)
||+ ++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|+ +|++++.|+++
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 998 5999999999999999999999999998875 5889999999999999999999996 79999999999
Q ss_pred HHhhcC
Q 007152 593 ELLSKG 598 (616)
Q Consensus 593 eL~~~~ 598 (616)
++....
T Consensus 903 el~~~~ 908 (1809)
T PRK00635 903 ELIHLH 908 (1809)
T ss_pred HHHhcc
Confidence 998654
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.4e-27 Score=266.78 Aligned_cols=199 Identities=27% Similarity=0.448 Sum_probs=171.5
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCC-CcCCc
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEP-VLFNC 460 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~-~lf~~ 460 (616)
.+.+|+||+=-++||..+|++|+||||||||+++|+|=-.- -+|+|++||.+..+ +.+++.+|||.|++ |+=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 45789999999999999999999999999999999997432 47999999998765 88999999999966 46667
Q ss_pred cHHHHHhcCC----CCCCCHHH----HHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 007152 461 SIEENIAYGC----DGKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-RIL 531 (616)
Q Consensus 461 TIreNi~~g~----~~~~~~~~----i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p-~il 531 (616)
||||-+.|.. |.+.+++| ++++++..++.++- |..||.-|..||..||.||.||=-|..|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999999864 33444433 67777777776654 45689989999999999999999999999 888
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh--hhhcCEEEEEe-CCEEEEecChh
Q 007152 532 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVS-DGEIVESGTHE 592 (616)
Q Consensus 532 iLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~--l~~aD~Iivl~-~G~Ive~G~~~ 592 (616)
.||||||+||+.+...|++.++++. .|+|++..=|+++. ++..|+++.|+ .|+.|-.|+-.
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 8999999999999999999999876 79999999999985 79999999995 68899888743
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.5e-26 Score=238.80 Aligned_cols=213 Identities=25% Similarity=0.395 Sum_probs=170.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.++++|++.. ..++|+||++.+||+++|.|--|||+|-|+.+|.|..++.+|+|.+||+++.--++ +..+.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4667777642 14789999999999999999999999999999999999999999999999987775 577888
Q ss_pred cEEEccCCC---c-CCccHHHHHhcCCCCCCCHH-HHHHHHHHcCchHHHHcCCC---cccccccCCCCCCChhHHHHHH
Q 007152 448 ISIVSQEPV---L-FNCSIEENIAYGCDGKASSA-DIENAAKMANAHDFISNFPE---KYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 448 i~~v~Q~~~---l-f~~TIreNi~~g~~~~~~~~-~i~~al~~a~l~~~i~~Lp~---GldT~vge~G~~LSGGQrQRla 519 (616)
|+|||-|-- | ..-||++||++..-...+.. -+...-+..-..+++..|.- +.++++ .+||||-+|++.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKVv 411 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKVV 411 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhHH
Confidence 999998643 4 46799999998722111100 12233333334456665532 334444 469999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 592 (616)
|||.|..+|+||||||||.++|--+.+.|.+.|+++. +|+++|+||-.+..+ ..||||+||.+|+|+..=+.+
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999999876 689999999999875 589999999999998754443
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=2.7e-26 Score=229.92 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=136.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe-------CCCCCHHHHhcccEEEccCCC--cCCccHHHHHhc-
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP-------LVEISHEHLHRKISIVSQEPV--LFNCSIEENIAY- 468 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~-------i~~~~~~~~r~~i~~v~Q~~~--lf~~TIreNi~~- 468 (616)
.+++|+||||||||||+..|.++..+..|++..++.+ ....+.....-.+.+..|++. ++..+++++-..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888665421 111122233445666666533 445555443211
Q ss_pred C-CCCCCCHHHHHHHHHHcCchHHHHc--CCCcccccccCC---------CCCCChhHHHHHHHHHHHcc----CCCEEE
Q 007152 469 G-CDGKASSADIENAAKMANAHDFISN--FPEKYQTFVGER---------GVRLSGGQKQRVAIARALMM----NPRILL 532 (616)
Q Consensus 469 g-~~~~~~~~~i~~al~~a~l~~~i~~--Lp~GldT~vge~---------G~~LSGGQrQRlalARAll~----~p~ili 532 (616)
. +....+.+++.+.++.++++.+... .|+|.-+.+.+. ...||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 1 1124678889999999998643222 244444444332 26799999999999999975 489999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhhhcCEEEEEeC
Q 007152 533 LDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 533 LDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
|||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999998864 7899999999999999999999853
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.1e-24 Score=249.77 Aligned_cols=97 Identities=33% Similarity=0.533 Sum_probs=88.6
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHcc---CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh
Q 007152 498 KYQT-FVGERGVRLSGGQKQRVAIARALMM---NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 572 (616)
Q Consensus 498 GldT-~vge~G~~LSGGQrQRlalARAll~---~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~ 572 (616)
|++. .+++...+|||||+||++|||+|.+ +|+++||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4543 3677888999999999999999997 599999999999999999999999998875 5889999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHH
Q 007152 573 SADTVAVV------SDGEIVESGTHEEL 594 (616)
Q Consensus 573 ~aD~Iivl------~~G~Ive~G~~~eL 594 (616)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=2.6e-24 Score=222.80 Aligned_cols=219 Identities=24% Similarity=0.398 Sum_probs=177.8
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeC-CCCCHHHHh
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL-VEISHEHLH 445 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i-~~~~~~~~r 445 (616)
..-++++|++..-+. +.+.+++|||++++||++||.|-+|-|-|-|+.+|+|+.+|.+|+|.++|.|+ ..+++..+|
T Consensus 255 ~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 345899999986432 34679999999999999999999999999999999999999999999999997 777888887
Q ss_pred cc-cEEEccCCC----cCCccHHHHHhcCCCCC--------CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh
Q 007152 446 RK-ISIVSQEPV----LFNCSIEENIAYGCDGK--------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 512 (616)
Q Consensus 446 ~~-i~~v~Q~~~----lf~~TIreNi~~g~~~~--------~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG 512 (616)
+. ++|||.|.+ ..+-|+.||+.++.-.. .+..++.+.++..- +-.+--+.|-++++ .+|||
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li--~~fdVr~~~~~~~a----~~LSG 406 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELI--EEFDVRAPSPDAPA----RSLSG 406 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHH--HHcCccCCCCCcch----hhcCC
Confidence 65 999999884 56779999999975311 12233433333211 11111244444443 56999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 590 (616)
|+.||+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.+ +|+.+++||-.|+.+ ..||||.||.+|+|+...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999997765 689999999999875 6799999999999998777
Q ss_pred hhH
Q 007152 591 HEE 593 (616)
Q Consensus 591 ~~e 593 (616)
.++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 665
No 390
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.6e-23 Score=216.66 Aligned_cols=211 Identities=26% Similarity=0.349 Sum_probs=172.5
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.+++.+|+|.|+.+.. +.+.++++.++.-+++++||++|+||||++|++.+-..|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 46899999999975422 789999999999999999999999999999999999999999998877 668
Q ss_pred cEEEccCCCcC-CccHH--HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 448 ISIVSQEPVLF-NCSIE--ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 448 i~~v~Q~~~lf-~~TIr--eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
|+|-.|.-.=| +-.+. |-..=..| .-+++|+++.|...|++..+..-| -..||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~p-G~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFP-GKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCC-CCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHh
Confidence 89988865432 22222 22211224 348999999999998877665432 256999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEEE-ecChhHHhhcCChhH
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE-SGTHEELLSKGGVYT 602 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive-~G~~~eL~~~~~~y~ 602 (616)
+.+|.+|||||||..||-++-..+-++|+++. --||+|||+.+.++. |+++++.++|++.. .|+.+ .|+
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~-------~yK 568 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGID-------KYK 568 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHH-------HHH
Confidence 99999999999999999999999999998873 479999999999976 99999999999975 33332 366
Q ss_pred HHHHHHhc
Q 007152 603 ALVKRQLQ 610 (616)
Q Consensus 603 ~l~~~~~~ 610 (616)
++...+.+
T Consensus 569 kl~~~e~~ 576 (582)
T KOG0062|consen 569 KLLGAELR 576 (582)
T ss_pred HHHHHHHh
Confidence 66665543
No 391
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.1e-24 Score=214.35 Aligned_cols=198 Identities=29% Similarity=0.401 Sum_probs=152.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-+-++||+|.||+. .|.+++++|-|.--+.||||||+|.|||||++||.|-++|+.|+.+-+- |=+|
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 46799999999964 5899999999999999999999999999999999999999999886544 4478
Q ss_pred EEEccCCC--c-CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 449 SIVSQEPV--L-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 449 ~~v~Q~~~--l-f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
|+-.|..- | -..|--|-+.-+- +..-++-+..+-..||..-. +|+ .-..|||||+-|+++|---+
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHA-------HTi---kikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHA-------HTI---KIKDLSGGQKARVALAELAL 720 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhcc-------ceE---eeeecCCcchHHHHHHHHhc
Confidence 98888653 2 2345556555432 23444555555555543221 222 23579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcC-EEEEEeCCEEEE-ecChhH
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD-TVAVVSDGEIVE-SGTHEE 593 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD-~Iivl~~G~Ive-~G~~~e 593 (616)
+.||||||||||.+||-++-..+-++|++. +-.+|+|||+-..+..-| ..+|+++-.|-| .|.+++
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 999999999999999999999999999987 457999999999886644 345566655544 355443
No 392
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=217.97 Aligned_cols=222 Identities=23% Similarity=0.375 Sum_probs=147.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..+.++|+|++|++ .++++|..|++.+|+++||+|++||||||+++.+.|-..|..-.+.+-=.+ +++.+..+..-
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~av 149 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQAV 149 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHHHH
Confidence 46999999999974 468999999999999999999999999999999999988866555331100 11222111110
Q ss_pred ---cEEEccCCCcCCccHHHHHhcCCCCCCCH---HHHHHHHHHcCchHHHH----cCC-Cccc-ccccCCCCCCChhHH
Q 007152 448 ---ISIVSQEPVLFNCSIEENIAYGCDGKASS---ADIENAAKMANAHDFIS----NFP-EKYQ-TFVGERGVRLSGGQK 515 (616)
Q Consensus 448 ---i~~v~Q~~~lf~~TIreNi~~g~~~~~~~---~~i~~al~~a~l~~~i~----~Lp-~Gld-T~vge~G~~LSGGQr 515 (616)
+-.+.++-.=. .-..|++.-..+ +.+. +++++-+...+.+.+=. -|+ .|+. ...-..-.+||||||
T Consensus 150 ~~v~~~~~~e~~rl-e~~~E~l~~~~d-~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 150 QAVVMETDHERKRL-EYLAEDLAQACD-DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHhhhhHHHHHHH-HHHHHHHHhhcc-chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 00000000000 001122222211 1111 11222222222211100 000 1211 112234578999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC-eEEEEecCchhhhh-cCEEEEEeCCE-EEEecChh
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQS-ADTVAVVSDGE-IVESGTHE 592 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~-T~I~ItHrl~~l~~-aD~Iivl~~G~-Ive~G~~~ 592 (616)
.|++|||||+.+|++|+|||||.+||.++..-+.+-|.+. ++ |+++++|.-+++.. |-+|+.|++++ +...|+++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnyd 305 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYD 305 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeecCCHH
Confidence 9999999999999999999999999999999999999776 45 89999999999965 99999999999 67799999
Q ss_pred HHhhc
Q 007152 593 ELLSK 597 (616)
Q Consensus 593 eL~~~ 597 (616)
+....
T Consensus 306 qy~~t 310 (614)
T KOG0927|consen 306 QYVKT 310 (614)
T ss_pred HHhhH
Confidence 88764
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.7e-24 Score=222.33 Aligned_cols=204 Identities=22% Similarity=0.295 Sum_probs=154.8
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
..+|...|.+.+|.+ +..|++-++++..|-.+++||+||+|||||++.|+. |.|..-.+ ++++|.
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~v------eqE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHV------EQEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCc------hhheec
Confidence 357999999999974 368999999999999999999999999999999998 44432221 111221
Q ss_pred ccEEEccCCCcCCccHHHHHhcCCC---CCCCHHHHHH-HHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 447 KISIVSQEPVLFNCSIEENIAYGCD---GKASSADIEN-AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~TIreNi~~g~~---~~~~~~~i~~-al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
--....|+. +-.+|-|.-+..-.+ ...+.+++.. ++.-.|..+..+..|- ..||||=|-|++|||
T Consensus 143 ~~t~~~~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 143 DDTEALQSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALAR 211 (582)
T ss_pred cchHHHhhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHH
Confidence 112222222 233444444433221 0114566666 8888888888888874 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G~~~eL~~~~ 598 (616)
|++.+||||+|||||..||..+-.-+.+.|..+ ..|+|+|||+-..+.. |--||.+++-++- ..|++++..+..
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k 287 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTK 287 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhh
Confidence 999999999999999999999999999999876 3899999999999976 8889999987763 478888776544
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.4e-23 Score=200.89 Aligned_cols=169 Identities=18% Similarity=0.154 Sum_probs=118.4
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCE---eCCCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV---PLVEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~---~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
+++++++.+| ..+|+||||||||||+..|.-.+....+ ....|. ++-... .-...|.+++|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----C
Confidence 5667777776 7799999999999999998744332211 001122 111111 11456888888877665 2
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH----ccCCCEEEEeCcCCCCC
Q 007152 466 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALD 541 (616)
Q Consensus 466 i~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl----l~~p~iliLDEpTSaLD 541 (616)
.+...+.+++.++++. .+-. .+...+||||||||++||||+ +.+|+++||||||++||
T Consensus 84 ----~~~~~~~~~~~~~l~~----------~~~~----~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD 145 (198)
T cd03276 84 ----PLCVLSQDMARSFLTS----------NKAA----VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMD 145 (198)
T ss_pred ----cCCHHHHHHHHHHhcc----------cccc----CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccC
Confidence 1111122333333333 2222 334468999999999999999 68999999999999999
Q ss_pred HHHHHHHHHHHHHHhC----CCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 542 AESEYLVQDAMDSLMK----GRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 542 ~~te~~i~~~l~~~~~----~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
+.+...+.+.|++... ++|+|++||+++.+..+|+|-+|..|+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 146 MVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999987642 358999999999999999999998754
No 395
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=2.1e-22 Score=205.11 Aligned_cols=169 Identities=28% Similarity=0.418 Sum_probs=133.2
Q ss_pred eeceeEEE-----eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC-cCCcc
Q 007152 388 LKGITLKL-----LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV-LFNCS 461 (616)
Q Consensus 388 L~~isl~I-----~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~-lf~~T 461 (616)
+.+..|++ ..||.++++||||-||||++++|+|.++|++|+ ..++ .++|=||--. -|+||
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~gt 417 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDGT 417 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCCc
Confidence 44555554 567899999999999999999999999999998 2222 6899999543 49999
Q ss_pred HHHHHhcCCCCCCCHHHH-HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCC
Q 007152 462 IEENIAYGCDGKASSADI-ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 540 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i-~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaL 540 (616)
|++=+.-..+..+.+.-+ .+.++-.++++.++ ..-.+|||||.||+|||-||.+++|+++||||++.|
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-----------~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLE-----------RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHHHh-----------cccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 999887554421222222 23444444444432 233569999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEe
Q 007152 541 DAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVS 581 (616)
Q Consensus 541 D~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~ 581 (616)
|.+..-.+-+.|++.. .++|.++|-|++-.+.. +||++|.+
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999989999998765 47899999999999987 89999996
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=3.3e-22 Score=189.46 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=78.8
Q ss_pred HHcCCCcccccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEec
Q 007152 492 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAH 566 (616)
Q Consensus 492 i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll----~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItH 566 (616)
+..+|+|..|++ ||||||||++|||++. .+|+++++||||++||+.+.+.+.+.+.++.+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 667899999998 9999999999999984 79999999999999999999999999988754 589999999
Q ss_pred CchhhhhcCEEEEEeC
Q 007152 567 RLSTVQSADTVAVVSD 582 (616)
Q Consensus 567 rl~~l~~aD~Iivl~~ 582 (616)
+++.++.+|+++.++.
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 397
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.87 E-value=5.8e-23 Score=203.52 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=143.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC--EEEECCEeCCCCCHHHHhccc--EEEccCCCcCCccHHHHHhc
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNGVPLVEISHEHLHRKI--SIVSQEPVLFNCSIEENIAY 468 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G--~I~idg~~i~~~~~~~~r~~i--~~v~Q~~~lf~~TIreNi~~ 468 (616)
+.+.+||+++|+|++|+|||||++.+.+.++...+ .+.+....-+..+..++.+.+ .+|-... +.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~---~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF---DEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC---CCCHHHHHHH
Confidence 57889999999999999999999999999877643 333332222335666665555 1111100 1111111111
Q ss_pred CCCCCCCHHHHHHHHHHcC-----chHHHHcCCCcccccccCCCCCCChhH--------HHHHHHHHHHccCCCEEEEeC
Q 007152 469 GCDGKASSADIENAAKMAN-----AHDFISNFPEKYQTFVGERGVRLSGGQ--------KQRVAIARALMMNPRILLLDE 535 (616)
Q Consensus 469 g~~~~~~~~~i~~al~~a~-----l~~~i~~Lp~GldT~vge~G~~LSGGQ--------rQRlalARAll~~p~iliLDE 535 (616)
.. .+. +.. +-....| +-|.+.++|+++++.+++.|..+|||| +||+++||+++++++|.+|
T Consensus 88 ~~--~~~-~~a-~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l-- 161 (249)
T cd01128 88 AE--MVL-EKA-KRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII-- 161 (249)
T ss_pred HH--HHH-HHH-HHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--
Confidence 10 000 000 1111222 346789999999999999999999999 9999999999999999999
Q ss_pred cCCCCCHHHHHH-HHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHH
Q 007152 536 ATSALDAESEYL-VQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 536 pTSaLD~~te~~-i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~ 608 (616)
||+++|+.+|.. ++ +.++. .++|.|++|||+....++|.|.||++|++ |++++..++.|..+++.+
T Consensus 162 ~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~~r 229 (249)
T cd01128 162 ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWLLR 229 (249)
T ss_pred eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHHHH
Confidence 999999876654 43 34443 57899999999999999999999999997 889998888888876544
No 398
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.86 E-value=6.5e-21 Score=175.43 Aligned_cols=211 Identities=21% Similarity=0.296 Sum_probs=158.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC-CC------
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE-IS------ 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~-~~------ 440 (616)
..|++.++.|+|+.. .|++-|+|+++|+|..+.+||.||||||||+|+|.|-.-.-.|.|.+.|.+.-. -+
T Consensus 12 ~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred ceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 479999999999865 389999999999999999999999999999999999988888999999976522 11
Q ss_pred ----HHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 441 ----HEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 441 ----~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
-.+|++..+.-- +..|--+-=.+-+.+|-. ..+.++-++ |-+=+|-.+.-+-..+|-|||.
T Consensus 90 l~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~-g~dp~Rre~-------------LI~iLDIdl~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVG-GDDPERREK-------------LIDILDIDLRWRMHKVSDGQRR 154 (291)
T ss_pred eeEecccccccccccc-cccccccccHHHHHhhcc-CCChhHhhh-------------hhhheeccceEEEeeccccchh
Confidence 123343333333 222222211233333322 112222222 2222444455666789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 593 (616)
|+-|+-.|++.=++|+|||.|--||.-....+++-+++-. ++.|++..||=.+-++ ...+++.|.+|+++..-++++
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~ 234 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQK 234 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccch
Confidence 9999999999999999999999999999999999998655 5889999999998764 589999999999998655555
Q ss_pred Hh
Q 007152 594 LL 595 (616)
Q Consensus 594 L~ 595 (616)
..
T Consensus 235 i~ 236 (291)
T KOG2355|consen 235 IK 236 (291)
T ss_pred hh
Confidence 44
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=5.6e-21 Score=176.24 Aligned_cols=209 Identities=27% Similarity=0.367 Sum_probs=168.1
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCCEEEECCEeCCCCCHHHHhcc----cEEEccCCC
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP----IKGKILLNGVPLVEISHEHLHRK----ISIVSQEPV 456 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~----~~G~I~idg~~i~~~~~~~~r~~----i~~v~Q~~~ 456 (616)
..+.+++|++...||+-++||+||||||-++|.++|.... +.-..++|++|+-++++...|+- |++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 3579999999999999999999999999999999998653 45667889999999999998865 679999997
Q ss_pred cCCc---cH----HHHHhcCCCC-------CCCHHHHHHHHHHcCchH---HHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 457 LFNC---SI----EENIAYGCDG-------KASSADIENAAKMANAHD---FISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 457 lf~~---TI----reNi~~g~~~-------~~~~~~i~~al~~a~l~~---~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
-.-+ +| -+||-...-. .-...+-.+.++.+|+.| ...+.| ..|--|+-|++.
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP-----------~ElTeGE~QKVM 168 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP-----------YELTEGECQKVM 168 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc-----------chhccCcceeee
Confidence 5422 33 3455322100 112345667888999864 345555 347778889999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
||-|+..+|.+||-||||.++|+.|...|++-+.++- .+.|+++++|++..+ +.||+|-||--|+-+|.++.+++++
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999999999887654 477999999999987 5699999999999999999999997
Q ss_pred c-CChhHHH
Q 007152 597 K-GGVYTAL 604 (616)
Q Consensus 597 ~-~~~y~~l 604 (616)
. .-.|.+-
T Consensus 249 ~PhHPYTqA 257 (330)
T COG4170 249 MPHHPYTQA 257 (330)
T ss_pred CCCCchHHH
Confidence 5 3445543
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=4.1e-21 Score=186.18 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=109.9
Q ss_pred eeceeEEEeCCC-EEEEECCCCCcHHHHHHHHH--------cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC
Q 007152 388 LKGITLKLLSGS-KIALVGPSGGGKSTIANLIE--------RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF 458 (616)
Q Consensus 388 L~~isl~I~~G~-~vaIvG~sGsGKSTL~~lL~--------g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf 458 (616)
.-++||++++|+ .++|+||||||||||++.+. |.+-|....+ .++|.+|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457999999996 69999999999999999998 6555532211 2334444321
Q ss_pred CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC
Q 007152 459 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 538 (616)
Q Consensus 459 ~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS 538 (616)
.++ .+..+.++-..+|+|+||+..+++++ .+|+++++||||+
T Consensus 78 --------~lg-----------------------------~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 --------DIG-----------------------------DEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred --------ecC-----------------------------chhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 010 00112223358999999999999995 8999999999999
Q ss_pred CCCHHHHHHHHH-HHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 007152 539 ALDAESEYLVQD-AMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 539 aLD~~te~~i~~-~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
++|+.+...+.. .++.+. .+.|+|++||..+..+.||++++|++|++...+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 999998888864 455554 478999999998888999999999999997663
No 401
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-20 Score=204.21 Aligned_cols=104 Identities=36% Similarity=0.539 Sum_probs=94.5
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEE
Q 007152 502 FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV 577 (616)
Q Consensus 502 ~vge~G~~LSGGQrQRlalARAll~~p---~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~I 577 (616)
.+|....+|||||.||+-||.-|.+++ -++||||||.+|-.+--+.+++.|.++. +|.|+|+|-|+|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 378889999999999999999999987 8999999999999999999999998875 799999999999999999999
Q ss_pred EEE------eCCEEEEecChhHHhhcCChhHHHH
Q 007152 578 AVV------SDGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 578 ivl------~~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
+=| +.|+|+++||++|+.+..+.|..-|
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~y 928 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchhHHH
Confidence 999 4789999999999998766665443
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=4.1e-21 Score=187.32 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=113.8
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCc---CCcc----
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL---FNCS---- 461 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l---f~~T---- 461 (616)
+++.++..+| ..+|+|+||||||||+..|.-..-...... ... -...++ +..=.++..+ |+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~---i~~g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEF---VKRGCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHH---hhCCCCcEEEEEEEEeCCCcc
Confidence 3455555443 668999999999999998865542211100 000 011111 1110111110 1111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH----HccCCCEEEEeCcC
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA----LMMNPRILLLDEAT 537 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA----ll~~p~iliLDEpT 537 (616)
..+|+++. .+.+.+.++++.... |.+..+|.+.+.. ..+...||||||||..+|++ ++.+|+++|+||||
T Consensus 85 ~~~n~~~~----~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~ 158 (213)
T cd03277 85 QVDNLCQF----LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEIN 158 (213)
T ss_pred ccCCceEE----EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 23444422 234455666666554 5556777766533 44667999999999887755 45899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhC--C-CeEEEEecCchh-hhhcC--EEEEEeCCE
Q 007152 538 SALDAESEYLVQDAMDSLMK--G-RTVLVIAHRLST-VQSAD--TVAVVSDGE 584 (616)
Q Consensus 538 SaLD~~te~~i~~~l~~~~~--~-~T~I~ItHrl~~-l~~aD--~Iivl~~G~ 584 (616)
++||+.+.+.+.+.+.+..+ + .|+|+|||++.. ++.+| +|+++++|+
T Consensus 159 ~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 159 QGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999988753 3 479999999854 45565 777777775
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.3e-20 Score=191.70 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 509 RLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~----~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
.|||||+||+++||+++. +|++++|||||++||+.+...+.+.++++.++.|+|+|||+++..+.||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998877899999999999999999999998874
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.83 E-value=6.8e-20 Score=219.19 Aligned_cols=204 Identities=21% Similarity=0.232 Sum_probs=147.4
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH------cC---CCCCCCEEEECCEeCCCCC----------HHHHhcc
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIE------RF---YDPIKGKILLNGVPLVEIS----------HEHLHRK 447 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~------g~---~~~~~G~I~idg~~i~~~~----------~~~~r~~ 447 (616)
=|+|++++||-|..++|.|.||||||||++=.+ .+ .+.-+--|.+|-.||..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997444 11 1333455888877774332 2456665
Q ss_pred cEEEcc--------CCCc--------------------------------------------------------CCccHH
Q 007152 448 ISIVSQ--------EPVL--------------------------------------------------------FNCSIE 463 (616)
Q Consensus 448 i~~v~Q--------~~~l--------------------------------------------------------f~~TIr 463 (616)
++-.|+ .-|- ++-||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 553222 1111 222333
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCcCCCC
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSAL 540 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~---p~iliLDEpTSaL 540 (616)
|-+.|+.. ...-.+..+.+..+|| ||= .+|+.-.+|||||.|||-||..|.++ +.++||||||.+|
T Consensus 1665 ea~~~F~~-~~~i~~~L~~L~~vGL---------gYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GL 1733 (1809)
T PRK00635 1665 EVAETFPF-LKKIQKPLQALIDNGL---------GYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSL 1733 (1809)
T ss_pred HHHHHhhc-cHHHHHHHHHHHHcCC---------Cee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCC
Confidence 33333311 0111112222222332 322 36888999999999999999999876 7899999999999
Q ss_pred CHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCChh
Q 007152 541 DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGGVY 601 (616)
Q Consensus 541 D~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~~~y 601 (616)
++..-+.+++.++++. .|.|+|+|.|+++.++.||.|+-| +.|+|+.+||++|+.+....|
T Consensus 1734 h~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~ 1801 (1809)
T PRK00635 1734 DNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSL 1801 (1809)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCc
Confidence 9999999999998875 689999999999999999999999 468999999999999765443
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.2e-20 Score=215.01 Aligned_cols=207 Identities=27% Similarity=0.380 Sum_probs=171.5
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-c
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP---IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-C 460 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~---~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 460 (616)
..+|+|+|.-++||+.+.+.||.|||||||+|.|+|-.+- ..|+|.+||.+.+++.+ ++.++|++|+...|. -
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3689999999999999999999999999999999998754 25799999999998887 888999999888775 5
Q ss_pred cHHHHHhcCCC--------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC-CCCCChhHHHHHHHHHHHccCCCEE
Q 007152 461 SIEENIAYGCD--------GKASSADIENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQRVAIARALMMNPRIL 531 (616)
Q Consensus 461 TIreNi~~g~~--------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~-G~~LSGGQrQRlalARAll~~p~il 531 (616)
|+||-|.|... ++.++.|..++....-+ -+-.|....||.||.+ .+..|||||.|+++|-++..+|.++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~ 282 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASIL 282 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceecccccccccCcccceeeeeeeeecCccee
Confidence 99999988632 01233332211111111 1235667899999975 5689999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCch--hhhhcCEEEEEeCCEEEEecChhHHhh
Q 007152 532 LLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLS--TVQSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 532 iLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~--~l~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
.+||+|-+||+.|.-++.++|+++.+ +.|.++.=|+.+ +.+..|.|++|.+|+++-+|+.++.+.
T Consensus 283 ~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 283 FWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999999998753 678888888775 688999999999999999999998864
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.82 E-value=1.1e-19 Score=183.21 Aligned_cols=198 Identities=26% Similarity=0.395 Sum_probs=154.0
Q ss_pred CCCcEEEEeEEEECCCC-----------------------CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-
Q 007152 366 QDGEVELDDVWFAYPSR-----------------------PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF- 421 (616)
Q Consensus 366 ~~~~I~~~~vsf~Y~~~-----------------------~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~- 421 (616)
..+.+.|+|++-.|.+. .+.++|+|+||+|+||+.++|||+|||||||++++++|.
T Consensus 354 L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 354 LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 44568888887665321 024689999999999999999999999999999999996
Q ss_pred -------CCCCCCEEEECCEeCCCCCHHHHhcccEEEcc--CCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHH
Q 007152 422 -------YDPIKGKILLNGVPLVEISHEHLHRKISIVSQ--EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI 492 (616)
Q Consensus 422 -------~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q--~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i 492 (616)
|.|++|.|.+--..++ +.+|- ||.+=.-||.|-+.= .+ -|-..-.++++.+|+.|-+
T Consensus 434 ~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep~f~~~tilehl~s-~t--GD~~~AveILnraGlsDAv 499 (593)
T COG2401 434 KGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEPEFGEVTILEHLRS-KT--GDLNAAVEILNRAGLSDAV 499 (593)
T ss_pred hcccccccCCCCCceeccccchh-----------hccCcccccccCchhHHHHHhh-cc--CchhHHHHHHHhhccchhh
Confidence 7899999987432222 33443 333333488887742 11 2223456889999998764
Q ss_pred HcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchh
Q 007152 493 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST 570 (616)
Q Consensus 493 ~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~ 570 (616)
.- ... -..||-|||-|..||+++...|.+++.||.-|.||+.|...+.+.|.++. .+.|.++||||.+.
T Consensus 500 ly-----Rr~----f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv 570 (593)
T COG2401 500 LY-----RRK----FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570 (593)
T ss_pred hh-----hcc----HhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 31 111 24699999999999999999999999999999999999999999998887 68899999999999
Q ss_pred hhhc--CEEEEEeCCEEE
Q 007152 571 VQSA--DTVAVVSDGEIV 586 (616)
Q Consensus 571 l~~a--D~Iivl~~G~Iv 586 (616)
...- |.++.+.=|+..
T Consensus 571 ~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 571 GNALRPDTLILVGYGKVP 588 (593)
T ss_pred HhccCCceeEEeeccccc
Confidence 8764 999998777654
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.80 E-value=1.3e-19 Score=169.44 Aligned_cols=134 Identities=28% Similarity=0.360 Sum_probs=99.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE-EEccCCCcCCccHHHHHhcCCC
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS-IVSQEPVLFNCSIEENIAYGCD 471 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~-~v~Q~~~lf~~TIreNi~~g~~ 471 (616)
..+.++.++.|+|||||||||+++.+.-..-..+|.+.... +. +.+ .+|+...-|
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------- 71 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------- 71 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE-------------
Confidence 34455679999999999999999997766555555444310 00 111 122221111
Q ss_pred CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc----CCCEEEEeCcCCCCCHHHHHH
Q 007152 472 GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYL 547 (616)
Q Consensus 472 ~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~----~p~iliLDEpTSaLD~~te~~ 547 (616)
.-+. .+||+||+||++|||++.. +|++++||||++++|+.....
T Consensus 72 ---------------------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 ---------------------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred ---------------------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 0000 1199999999999999986 789999999999999999999
Q ss_pred HHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 548 VQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 548 i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
+.+.+.+.. ++.|+|++||+++..+.+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999998764 35899999999999999999999964
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=3.2e-19 Score=182.15 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=135.8
Q ss_pred eEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCCCHH
Q 007152 374 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEISHE 442 (616)
Q Consensus 374 ~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~-----------idg~~i~~~~~~ 442 (616)
++..+|.. +...|.++- +.++|+.+||+|+||-||||-+|+|+|.+.|.=|+-. +-|..+.++=.+
T Consensus 79 e~vHRYg~--NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGV--NGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccC--CceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 45667753 223444442 3579999999999999999999999999999877531 112222111111
Q ss_pred ----HHh--cccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 443 ----HLH--RKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 443 ----~~r--~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.+| .++-||.-=|-.+.||++|=+.-.+. . -...++.+..+|.+. +..+-..||||+-|
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de-~---g~~devve~l~L~nv-----------l~r~v~~LSGGELQ 220 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE-R---GKFDEVVERLGLENV-----------LDRDVSELSGGELQ 220 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh-c---CcHHHHHHHhcchhh-----------hhhhhhhcCchHHH
Confidence 111 12345555566778888887753321 1 123344444444443 44456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhhh-cCEEEEEe
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVS 581 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~~-aD~Iivl~ 581 (616)
|+|||-|++|++|++++|||||-||-...-..-+.|+++.+ ++++|+|-|+|..++. +|-|-++-
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999889999999887 6999999999999987 78887774
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=4.5e-19 Score=173.99 Aligned_cols=153 Identities=20% Similarity=0.136 Sum_probs=114.4
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE-EEccCCCcCCccH
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS-IVSQEPVLFNCSI 462 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~-~v~Q~~~lf~~TI 462 (616)
...+.+|+++++++|++++|.|||||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3478999999999999999999999999999999981 13344555 6776643221 1
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCc---C
Q 007152 463 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEA---T 537 (616)
Q Consensus 463 reNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl--l~~p~iliLDEp---T 537 (616)
.| +++...++.+.+ ..++|.|++|+..+|+++ +.+|+++||||| |
T Consensus 73 ~~----------------~il~~~~l~d~~--------------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT 122 (222)
T cd03285 73 VD----------------CILARVGASDSQ--------------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGT 122 (222)
T ss_pred cc----------------eeEeeeccccch--------------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCC
Confidence 11 112222222211 256999999999999999 899999999999 9
Q ss_pred CCCCHHHHHHHH-HHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 538 SALDAESEYLVQ-DAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 538 SaLD~~te~~i~-~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
+++|+.+..... +.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 123 ~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 123 STYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred ChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999998654433 55543 24789999999867778899999999999977653
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=5.4e-18 Score=172.00 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=120.9
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----------------------------------------CCC
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-----------------------------------------IKG 427 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-----------------------------------------~~G 427 (616)
++.++++.+| .++|+|+|||||||++..|.-+... ...
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4556676665 6889999999999999876433211 011
Q ss_pred EEEECCEeCCC-CCHHHHhcccEEEccCCCcCCccHHHHHhcCCCC--CCC------HHHHHHHHHHcCchHHHHcCCCc
Q 007152 428 KILLNGVPLVE-ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG--KAS------SADIENAAKMANAHDFISNFPEK 498 (616)
Q Consensus 428 ~I~idg~~i~~-~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~--~~~------~~~i~~al~~a~l~~~i~~Lp~G 498 (616)
.+.+||..++. -+...+-..|.+.|++..|+.++-.+-..|-+.- ... -+++.++++.- +-+.+-|+.
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~g~~~ 168 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQR---NALLKGPHR 168 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH---HHHhCCCCh
Confidence 34567766654 1122334456777877888865544444433210 011 01222222221 111124666
Q ss_pred ccccccCCCC----CCChhHHHHHHHHHHHc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEe
Q 007152 499 YQTFVGERGV----RLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 565 (616)
Q Consensus 499 ldT~vge~G~----~LSGGQrQRlalARAll---------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~It 565 (616)
.+..+.-++. .+|+||+|+++|||++. ++|++++|||||++||+...+.+.+.+.+.. . +++++
T Consensus 169 d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~--q-~ii~~ 245 (270)
T cd03242 169 DDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV--Q-TFVTT 245 (270)
T ss_pred hheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC--C-EEEEe
Confidence 5555543333 47999999999999974 7999999999999999999999999997652 4 45555
Q ss_pred cCchhh-hhc---CEEEEEeCCEE
Q 007152 566 HRLSTV-QSA---DTVAVVSDGEI 585 (616)
Q Consensus 566 Hrl~~l-~~a---D~Iivl~~G~I 585 (616)
|....+ ..| ++|+.+++|+|
T Consensus 246 ~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 246 TDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CCchhccchhccCccEEEEeCcEE
Confidence 544443 435 78999999986
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.73 E-value=2.4e-18 Score=146.30 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=72.2
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
++|++++|++++|+.++|+||||||||||+++++ +|++.++|.|+..++.++.++.++++||+ +|++|||||
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~N 74 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLN 74 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhh
Confidence 6899999999999999999999999999999987 79999999999999999999999999999 999999999
Q ss_pred Hhc
Q 007152 466 IAY 468 (616)
Q Consensus 466 i~~ 468 (616)
|.+
T Consensus 75 i~~ 77 (107)
T cd00820 75 IFL 77 (107)
T ss_pred cee
Confidence 988
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=1.9e-17 Score=190.80 Aligned_cols=100 Identities=27% Similarity=0.450 Sum_probs=90.3
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh
Q 007152 498 KYQTF-VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 573 (616)
Q Consensus 498 GldT~-vge~G~~LSGGQrQRlalARAll~~p--~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~ 573 (616)
|++.. ....-.+|||||+||++|||||..+| ++|||||||++||+...+.+.+.|+++. +|.|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 45667789999999999999999997 9999999999999999999999999876 48999999999999999
Q ss_pred cCEEEEE------eCCEEEEecChhHHhhc
Q 007152 574 ADTVAVV------SDGEIVESGTHEELLSK 597 (616)
Q Consensus 574 aD~Iivl------~~G~Ive~G~~~eL~~~ 597 (616)
||+|++| ++|+|+..|+.+|+.+.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998754
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.4e-17 Score=189.59 Aligned_cols=95 Identities=32% Similarity=0.482 Sum_probs=87.9
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEE
Q 007152 503 VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 503 vge~G~~LSGGQrQRlalARAll~~p--~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
.+....+|||||+||++|||||..+| ++|||||||++||+++.+.+.+.|+++. +++|+|+|+|+++.++.||+|++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 46667899999999999999999986 8999999999999999999999999875 47899999999999999999999
Q ss_pred E------eCCEEEEecChhHHhhc
Q 007152 580 V------SDGEIVESGTHEELLSK 597 (616)
Q Consensus 580 l------~~G~Ive~G~~~eL~~~ 597 (616)
| ++|+|++.|+.+++...
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred ecccccCCCCEEeeccCHHHHhcC
Confidence 9 99999999999998643
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.72 E-value=7.6e-18 Score=162.55 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=95.0
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC-CccHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIE 463 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf-~~TIr 463 (616)
++|++|++|+ +|++++|+||||||||||++.|+|... +..+|.++.. -.+++|...+| .-|++
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccch
Confidence 3678888776 479999999999999999999987542 2235655532 13666755555 56999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
||+.++.. ...+++.++ .+.++.+. .++|+++|+||||+++|+.
T Consensus 78 d~l~~~~s--~~~~e~~~~------~~iL~~~~----------------------------~~~p~llllDEp~~glD~~ 121 (199)
T cd03283 78 DDLRDGIS--YFYAELRRL------KEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSR 121 (199)
T ss_pred hccccccC--hHHHHHHHH------HHHHHhcc----------------------------CCCCeEEEEecccCCCCHH
Confidence 99988742 222222221 22222221 0799999999999999999
Q ss_pred HHHHHHH-HHHHHh-CCCeEEEEecCchhhhhc
Q 007152 544 SEYLVQD-AMDSLM-KGRTVLVIAHRLSTVQSA 574 (616)
Q Consensus 544 te~~i~~-~l~~~~-~~~T~I~ItHrl~~l~~a 574 (616)
+...+.. .++.+. ++.|+|++||+++.+...
T Consensus 122 ~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 122 ERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 7766544 344443 478999999999876554
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.72 E-value=1e-17 Score=162.64 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=103.0
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcC
Q 007152 391 ITLKLLSGSKIALVGPSGGGKSTIANLIERF-YDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYG 469 (616)
Q Consensus 391 isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~-~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g 469 (616)
.++++.+|++++|+||||||||||++.+.+. +.+..|...- ..+..+++..|....|+ ..++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~~~--~~d~---- 84 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTRIG--AEDS---- 84 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEEec--Cccc----
Confidence 3445668999999999999999999999943 2222232110 01122333322221111 0000
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHH
Q 007152 470 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 549 (616)
Q Consensus 470 ~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~ 549 (616)
+.++-..+|++++| ++.+-+...+|+++||||||+++|+.....+.
T Consensus 85 ---------------------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 85 ---------------------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ---------------------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11222345666655 77777888999999999999999999777665
Q ss_pred HH-HHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 007152 550 DA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 550 ~~-l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
.. ++.+. .+.++|++||+.+..+.+|++..+++|++.+.++..++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 54 34332 47899999999999999999999999999988765443
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1e-16 Score=194.86 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=105.8
Q ss_pred cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH------HHHHHHHHccCCCE
Q 007152 457 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ------RVAIARALMMNPRI 530 (616)
Q Consensus 457 lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ------RlalARAll~~p~i 530 (616)
.|+||++|||.+ +| +++++ +.+++.++.++|+..+|.| ||.++..| .||||||| |++||||++.+|++
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 499999999999 77 67766 7999999999999999999 99999886 89999999 99999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEecCchhhh------hcCEEEEE
Q 007152 531 LLLDEATSALDAESEYLVQDAMDSLM------KGRTVLVIAHRLSTVQ------SADTVAVV 580 (616)
Q Consensus 531 liLDEpTSaLD~~te~~i~~~l~~~~------~~~T~I~ItHrl~~l~------~aD~Iivl 580 (616)
|+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .+|+.+.+
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 99999999999999999999887763 3679999999999865 46777766
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.68 E-value=2.2e-16 Score=158.45 Aligned_cols=142 Identities=18% Similarity=0.301 Sum_probs=106.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC-HHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHH
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS-HEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSA 477 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~-~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~ 477 (616)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++..++ ..++...++++||+..--..++.||. | + .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~-k--~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P-K--AE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h-H--HH
Confidence 688999999999999999999999999999999999998775 57788889999997633233444441 1 1 00
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 007152 478 DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 557 (616)
Q Consensus 478 ~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~ 557 (616)
.+ ..++|+ .+|+++|+|||++. +.+...++.+..
T Consensus 185 ~~--------------------------------------~~~i~~--~~P~villDE~~~~------e~~~~l~~~~~~ 218 (270)
T TIGR02858 185 GM--------------------------------------MMLIRS--MSPDVIVVDEIGRE------EDVEALLEALHA 218 (270)
T ss_pred HH--------------------------------------HHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHHhC
Confidence 00 455566 49999999999742 334344444456
Q ss_pred CCeEEEEecCchh--h------------hhcCEEEEEeCCEEEEecChhHHh
Q 007152 558 GRTVLVIAHRLST--V------------QSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 558 ~~T~I~ItHrl~~--l------------~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+.|+|++||..+. + ..+||+++|++|+ ..|+.+++.
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 8999999997765 3 4589999999887 667766553
No 418
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.5e-16 Score=158.66 Aligned_cols=210 Identities=21% Similarity=0.413 Sum_probs=133.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH--
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-- 444 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~-- 444 (616)
+|.++|.+.+-. .+..+.|-||+|-.|..+++|||+|-|||||++-|+-- --|..=.++++-+++-.-+...+
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 477888777653 34578999999999999999999999999999988642 22322333333333221111100
Q ss_pred -----hcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHH---HHHHHcCch-------HHHHcCCCcccccccCCC-C
Q 007152 445 -----HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIE---NAAKMANAH-------DFISNFPEKYQTFVGERG-V 508 (616)
Q Consensus 445 -----r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~---~al~~a~l~-------~~i~~Lp~GldT~vge~G-~ 508 (616)
.++..++-.+..| ..-|--|+. . -.+++. +-++..|.+ ..+..| |++-.+-++. .
T Consensus 341 vl~aD~kRl~lLeee~~L-----~~q~e~Gd~-t-aaErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~ 411 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKL-----MSQIEEGDT-T-AAERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTT 411 (807)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHcCch-H-HHHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCcc
Confidence 0111111111110 001111110 0 011121 122222221 111111 4454454443 5
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV- 586 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Iv- 586 (616)
.+|||=|-|++|||||+-.|-+|.|||||.+||-..---+-+.|..+ .+|.++|||+-..+.. |..||.||+-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHY 489 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhh
Confidence 79999999999999999999999999999999999877777777777 5899999999999976 9999999998874
Q ss_pred EecChh
Q 007152 587 ESGTHE 592 (616)
Q Consensus 587 e~G~~~ 592 (616)
.+|+|.
T Consensus 490 YrGNY~ 495 (807)
T KOG0066|consen 490 YRGNYT 495 (807)
T ss_pred hcchHH
Confidence 466654
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.62 E-value=8.3e-15 Score=154.44 Aligned_cols=76 Identities=26% Similarity=0.350 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh---cC
Q 007152 508 VRLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS---AD 575 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll---------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~---aD 575 (616)
..+|+||+|+++||+++. ++|||++||||+|.||+...+.+.+.+.+. +..+++.||....+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999884 799999999999999999999999988654 4588999998876544 46
Q ss_pred EEEEEeCCEE
Q 007152 576 TVAVVSDGEI 585 (616)
Q Consensus 576 ~Iivl~~G~I 585 (616)
+++.+++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.60 E-value=1.9e-15 Score=147.76 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=103.1
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-ccH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSI 462 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~TI 462 (616)
..+.+|+++++++ ++++|+|||||||||+++.+++..-. ..|. . ....+..+++++| +|. -++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~------~-----vp~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGS------F-----VPASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCC------e-----eccccceecceee---EeccCCc
Confidence 3688999999887 99999999999999999999864311 1111 1 1111235666654 232 244
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEEeCc---C
Q 007152 463 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEA---T 537 (616)
Q Consensus 463 reNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl--l~~p~iliLDEp---T 537 (616)
+||+..|. |-=...+..+++++ ..+|+++||||| |
T Consensus 83 ~~~ls~g~----------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt 122 (216)
T cd03284 83 SDDLAGGR----------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGT 122 (216)
T ss_pred hhhhccCc----------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCC
Confidence 55554431 10011122344444 469999999999 9
Q ss_pred CCCCHHH-HHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 007152 538 SALDAES-EYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 538 SaLD~~t-e~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
+++|... ...+.+.+.+. .+.|+|++||..+..+.+|++-.+++|++...++-+++
T Consensus 123 ~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 123 STYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred ChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9999875 34556666442 37899999999988888998888889998776665555
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=6.6e-15 Score=142.38 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=96.8
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE-EEccCCCcCCccH
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS-IVSQEPVLFNCSI 462 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~-~v~Q~~~lf~~TI 462 (616)
++++.+|++|++++|+.++|+|||||||||+++.++++. +..++| +||-.. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 347899999999999999999999999999999998773 222332 222211 11234
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCH
Q 007152 463 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 542 (616)
Q Consensus 463 reNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~ 542 (616)
.|||... ++ .+..+.++.+++|+|++|+ +.+-++..+|++++||||++++|+
T Consensus 72 ~d~I~~~-------------------------~~--~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~ 123 (204)
T cd03282 72 FNRLLSR-------------------------LS--NDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSS 123 (204)
T ss_pred hhheeEe-------------------------cC--CccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence 4444221 11 1112334557899999975 455557789999999999999999
Q ss_pred HHHHHHHH-HHHHHh-CCCeEEEEecCchhhhhcC
Q 007152 543 ESEYLVQD-AMDSLM-KGRTVLVIAHRLSTVQSAD 575 (616)
Q Consensus 543 ~te~~i~~-~l~~~~-~~~T~I~ItHrl~~l~~aD 575 (616)
.....+.. .++.+. .+.++|++||..+..+.++
T Consensus 124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 124 ADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 75444333 334333 4789999999999877654
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.55 E-value=5.6e-15 Score=166.17 Aligned_cols=106 Identities=29% Similarity=0.459 Sum_probs=92.1
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEEeCcC-CCC
Q 007152 478 DIENAAKMANAHDFISNFPEKYQTFVGERG------VRLSGGQKQRVAIARALM----------MNPRILLLDEAT-SAL 540 (616)
Q Consensus 478 ~i~~al~~a~l~~~i~~Lp~GldT~vge~G------~~LSGGQrQRlalARAll----------~~p~iliLDEpT-SaL 540 (616)
.+.+.|+..+. ++...+|+++++.+++.| ..||||||||++|||||+ .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 45556666553 455578999999999888 689999999999999987 599999999998 789
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC-CEE
Q 007152 541 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD-GEI 585 (616)
Q Consensus 541 D~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~-G~I 585 (616)
|+.+...+.+.|.++ ++.|+|+|||+.+....||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999999999999999986 554
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.55 E-value=1.7e-14 Score=142.19 Aligned_cols=168 Identities=23% Similarity=0.288 Sum_probs=101.3
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHH-HcCCC-CC-CCEEEECCEeCCCC------CHHHHhcccEEEccCCCcC--
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLI-ERFYD-PI-KGKILLNGVPLVEI------SHEHLHRKISIVSQEPVLF-- 458 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL-~g~~~-~~-~G~I~idg~~i~~~------~~~~~r~~i~~v~Q~~~lf-- 458 (616)
...+.+. +..++|+|||||||||++..| .-+.. +. +.. +...+++ ........|....+++.-.
T Consensus 17 ~~~~~~~-~~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r----~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~ 91 (220)
T PF02463_consen 17 NAELSFS-PGLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFR----GSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFE 91 (220)
T ss_dssp EEEEETT-SSEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-----SSGGTCB--BTTB---SEEEEEEEEECTTEESS
T ss_pred eEEEecC-CCCEEEEcCCCCCHHHHHHHHHHHHHHccccccc----cccccccccccccccccccccccccccccccccc
Confidence 4445554 459999999999999999999 34432 11 111 1111111 1112222344433322211
Q ss_pred --Cc--cHHH--------HHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH---
Q 007152 459 --NC--SIEE--------NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA--- 523 (616)
Q Consensus 459 --~~--TIre--------Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA--- 523 (616)
.. .|.. ..... ....+.+++.+.+....+... .||||||-+++||=-
T Consensus 92 ~~~~~~~i~r~~~~~~~~~~~in-~~~~~~~~~~~~l~~~~i~~~-----------------~lSgGEk~~~~Lal~lA~ 153 (220)
T PF02463_consen 92 LDKKEIEISRRIDRKGRSEYKIN-GKKVRLKDLEELLPEVGISPE-----------------FLSGGEKSLVALALLLAL 153 (220)
T ss_dssp SSSSEEEEEEEEETTS-EEEEET-TEEE-HHHHHHHHHCTTTTTT-----------------GS-HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence 00 1110 01111 113455666666665554332 899999999999833
Q ss_pred -HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEE
Q 007152 524 -LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 524 -ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
-+.++|++||||+.++||......+.+.|++..++.-+|++||+...+..||+.+.+
T Consensus 154 ~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 154 QRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp HTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356889999999999999999999999999988788899999999999999999876
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.55 E-value=2.9e-14 Score=144.86 Aligned_cols=195 Identities=22% Similarity=0.337 Sum_probs=137.9
Q ss_pred EECCCCCCCcceeceeEEEeCCC-----EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEE
Q 007152 377 FAYPSRPNHMVLKGITLKLLSGS-----KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIV 451 (616)
Q Consensus 377 f~Y~~~~~~~vL~~isl~I~~G~-----~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v 451 (616)
|+||+. +..+.+..|.|+.|+ .+...|++|-||||+++.++|.++|++|. ++..+ .++|=
T Consensus 343 y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSyk 407 (592)
T KOG0063|consen 343 YSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYK 407 (592)
T ss_pred eccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecc
Confidence 778853 357889999999996 57889999999999999999999998762 22222 37777
Q ss_pred ccCCC-cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007152 452 SQEPV-LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 530 (616)
Q Consensus 452 ~Q~~~-lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~i 530 (616)
||.-. =|.+|+|.=+.= .+|.+...-.+...+.. |--.+..++..-.+||||+.||+|||-+|=+.+++
T Consensus 408 pqkispK~~~tvR~ll~~---------kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLHT---------KIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred ccccCccccchHHHHHHH---------HhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 88644 588888875531 12222211111111111 22234445556678999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHH--hCCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 007152 531 LLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQS-ADTVAVVSD--GEIVESGTHEELLS 596 (616)
Q Consensus 531 liLDEpTSaLD~~te~~i~~~l~~~--~~~~T~I~ItHrl~~l~~-aD~Iivl~~--G~Ive~G~~~eL~~ 596 (616)
++.|||.+-||.+....--..+++. ..++|-.+|-|++-.... |||++|.+. +.....-+++.|++
T Consensus 478 YliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred EEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999999776666666553 357899999999877654 999999874 22333334445543
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=6.8e-13 Score=141.61 Aligned_cols=176 Identities=22% Similarity=0.297 Sum_probs=126.2
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC---CEeCCC-----CCHHHHhcccEEEccCCC
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN---GVPLVE-----ISHEHLHRKISIVSQEPV 456 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id---g~~i~~-----~~~~~~r~~i~~v~Q~~~ 456 (616)
..+++++ |++++|++++|+|+||+|||||+++|+|+++|+.|.|.+. |.++.+ ++.+.+++.+.+|.+..
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~- 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD- 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC-
Confidence 3589999 9999999999999999999999999999999999999995 555553 45566788888887532
Q ss_pred cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC-CCCCChhHHHH-HHHHHHHccCCCEEEEe
Q 007152 457 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQR-VAIARALMMNPRILLLD 534 (616)
Q Consensus 457 lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~-G~~LSGGQrQR-lalARAll~~p~iliLD 534 (616)
+..-+++..+.-.+.+.|+... +|.|-.+-=+ =.++- |.|| |+++ +.+||
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A--~A~rEisl~---~ge~P----- 275 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVA--MAQREIGLA---VGEPP----- 275 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHH--HHHHHHHHh---cCCCC-----
Confidence 1224455555545555566553 3666544321 11111 1111 1111 12333
Q ss_pred CcCCCCCHHHHHHHHHHHHHHh---CCC-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 007152 535 EATSALDAESEYLVQDAMDSLM---KGR-----TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 535 EpTSaLD~~te~~i~~~l~~~~---~~~-----T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~ 592 (616)
.|+++|+..-..+.+.+++.. +|. |+++.+|+++. ..||++.++.+|+|+..|+-.
T Consensus 276 -~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la 339 (438)
T PRK07721 276 -TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLA 339 (438)
T ss_pred -ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHH
Confidence 589999999999988888765 465 99999999985 889999999999999888743
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1.5e-12 Score=127.15 Aligned_cols=136 Identities=20% Similarity=0.216 Sum_probs=92.1
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH--cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC--cc
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE--RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN--CS 461 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~--g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~--~T 461 (616)
+|-+|+++.=..+.+++|+||||+|||||++.+. ..+ ++.|...... ...++|.+|...-++ +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4555666542223789999999999999999998 333 5566655432 125777777643221 11
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCC
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 541 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD 541 (616)
+.+++ ..| --+-||+++|+++..+|++++||||++++|
T Consensus 85 i~~~~----------------------S~f--------------------~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 85 VSSGQ----------------------SAF--------------------MIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred hhhcc----------------------chH--------------------HHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 11111 112 235699999999999999999999999999
Q ss_pred HHH-HHHHHHHHHHHhC----CCeEEEEecCchhhhhcC
Q 007152 542 AES-EYLVQDAMDSLMK----GRTVLVIAHRLSTVQSAD 575 (616)
Q Consensus 542 ~~t-e~~i~~~l~~~~~----~~T~I~ItHrl~~l~~aD 575 (616)
+.. .......++++.+ +.++|++||.++.++...
T Consensus 123 ~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 123 TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 974 4444455655542 248999999999877653
No 427
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.39 E-value=1e-12 Score=150.20 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=99.4
Q ss_pred cEEEEeEEEECCCCCCCcceec-----eeEEEeCC-CEEEEECCCCCcHHHHHHHHHcC-CCCCCCEEEECCEeCCCCCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKG-----ITLKLLSG-SKIALVGPSGGGKSTIANLIERF-YDPIKGKILLNGVPLVEISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~-----isl~I~~G-~~vaIvG~sGsGKSTL~~lL~g~-~~~~~G~I~idg~~i~~~~~ 441 (616)
.+.++++.. |++++ +|+++.+| +.++|+||||+|||||+|.+++. +.+..|
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-------------- 352 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-------------- 352 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC--------------
Confidence 577776643 33433 78888877 89999999999999999999987 344333
Q ss_pred HHHhcccEEEccCCC-cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 442 EHLHRKISIVSQEPV-LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~-lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
.+||.... .+ .+.+++.. ...+++ .+.++-.+||+|++|+..+
T Consensus 353 -------~~Vpa~~~~~~--~~~d~i~~----~i~~~~-----------------------si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 353 -------IPIPANEHSEI--PYFEEIFA----DIGDEQ-----------------------SIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred -------CCccCCccccc--cchhheee----ecChHh-----------------------HHhhhhhHHHHHHHHHHHH
Confidence 14444432 11 12223211 111110 0122346799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHh-CCCeEEEEecCchhhh
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQD-AMDSLM-KGRTVLVIAHRLSTVQ 572 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~-~l~~~~-~~~T~I~ItHrl~~l~ 572 (616)
++++ .+|+++|||||++++|+..-..+.. .+..+. .+.++|++||..+...
T Consensus 397 l~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 397 LSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 9987 7899999999999999998877744 444443 4789999999987643
No 428
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.39 E-value=7.3e-13 Score=147.93 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCC
Q 007152 508 VRLSGGQKQRVAIARALMMN----PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 583 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~----p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G 583 (616)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.|+++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46999999999999999875 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 007152 584 E 584 (616)
Q Consensus 584 ~ 584 (616)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.38 E-value=5.6e-13 Score=127.48 Aligned_cols=78 Identities=19% Similarity=0.159 Sum_probs=56.2
Q ss_pred cCCCCCCChhHHHHHHHHHHHcc--CCCEEEEeCcCCCCCHHHHHHHHHH-HHHHh--CCCeEEEEecCchhhhhcCEEE
Q 007152 504 GERGVRLSGGQKQRVAIARALMM--NPRILLLDEATSALDAESEYLVQDA-MDSLM--KGRTVLVIAHRLSTVQSADTVA 578 (616)
Q Consensus 504 ge~G~~LSGGQrQRlalARAll~--~p~iliLDEpTSaLD~~te~~i~~~-l~~~~--~~~T~I~ItHrl~~l~~aD~Ii 578 (616)
.++-..+|+|++| +++++.. +|+++|+|||++++|+.....+... ++.+. .+.++|++||..+..+.+|+--
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~ 132 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHP 132 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCc
Confidence 3445678888887 4555555 9999999999999999976666544 44443 3789999999998877787533
Q ss_pred EEeCCE
Q 007152 579 VVSDGE 584 (616)
Q Consensus 579 vl~~G~ 584 (616)
-+++++
T Consensus 133 ~v~~~~ 138 (185)
T smart00534 133 GVRNLH 138 (185)
T ss_pred cceEEE
Confidence 333333
No 430
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.37 E-value=1.3e-08 Score=107.17 Aligned_cols=281 Identities=13% Similarity=0.072 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 54 IASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSH 133 (616)
Q Consensus 54 ~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 133 (616)
..+.+.+......+.+.|.+...-..+.. ......+..+..++.+.++...+..+..|+..++..+-...+...+.++
T Consensus 103 ~~v~l~V~~n~w~~~FydaLq~al~~~~~--~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~ 180 (409)
T PRK11098 103 FLVQVSVAVNAWYAPFYDLIQTALSSPGK--VTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAH 180 (409)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667777866431000000 0122334444455555556666677788888888888888888888887
Q ss_pred HHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHH
Q 007152 134 LINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL-------------TLLALVV 200 (616)
Q Consensus 134 l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l-------------~li~l~~ 200 (616)
-++.. ..+ .-=+|+..|+..+.+........++.++++.+..+.+++.++..+ ..++++.
T Consensus 181 Wl~~r--~ie-----nPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiy 253 (409)
T PRK11098 181 WQKLR--HIE-----GAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVW 253 (409)
T ss_pred HHhcC--CCC-----CccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHH
Confidence 77654 122 135899999999999998989999999999999999999988763 3334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 201 VPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQE-KNEISRYSEKVDETLKLGLQQAKVVGLFFG 279 (616)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (616)
..+...+..++++++-+...+.++..+++...+.-.=++.+ +.| +...++|.+..+++.+...+ ....+.
T Consensus 254 ai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~----~~~l~~ 324 (409)
T PRK11098 254 SLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFH----YMYFNI 324 (409)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 44455556678899999888888888888776654333333 112 22334444444444333332 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007152 280 GLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS 352 (616)
Q Consensus 280 ~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 352 (616)
.......+..++-.++.+.....|+++.|.+........++...++.+.+.+..+.+-.+..+|+.++.+..+
T Consensus 325 f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l~ 397 (409)
T PRK11098 325 ARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAALD 397 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444445677888999999999999999999999999999999999999999999999876543
No 431
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=1.5e-12 Score=127.81 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcC-----CCCCHHHHHHHHHHHHHHh
Q 007152 513 GQKQRVAIARALMMNPRILLLDEAT-----SALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpT-----SaLD~~te~~i~~~l~~~~ 556 (616)
-|+|+..|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998874
No 432
>PRK12369 putative transporter; Reviewed
Probab=99.36 E-value=2e-08 Score=103.84 Aligned_cols=284 Identities=17% Similarity=0.109 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 52 LLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLF 131 (616)
Q Consensus 52 ~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 131 (616)
.+..+.+.+......+.+.|.+.....++.. .....++..+..+.++.++..++..+..|+..+++.+....+...++
T Consensus 26 ~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~--~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l 103 (326)
T PRK12369 26 LWYQVSLNVAINEWYGDFYDLLQKAKIEPNN--HTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYL 103 (326)
T ss_pred HHHHHHHhhhhhHHhHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777788877542100000 01233444444555555666667777888888888888888999999
Q ss_pred HHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHH
Q 007152 132 SHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLT------------LLALV 199 (616)
Q Consensus 132 ~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~------------li~l~ 199 (616)
++-+...- ..++.+ +|+..|++.+.+........++.+++..+.+..+++.++..+. .++++
T Consensus 104 ~~wl~~~~-~iDNPD-----QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aii 177 (326)
T PRK12369 104 KFWRNKRD-NIEGSS-----QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALL 177 (326)
T ss_pred HHHhcCCC-CCCCcc-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHH
Confidence 88887431 122222 8999999999999999999999999999999999998775443 22344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 200 VVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFG 279 (616)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (616)
...+...+..++++++-+...+.++..+++...+...=++.+. +...+...++|.+..+++.+...+..+ ...
T Consensus 178 yai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~~E~~~l~~~f~~v~~n~~~~~~~~~~----l~~ 250 (326)
T PRK12369 178 ISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---YAKPETLIELFTGLRFNYFRLFLHYGY----FNI 250 (326)
T ss_pred HHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHh----HHH
Confidence 4444455667788888888888888887777655432222222 111123344444444443333333222 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 280 GLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 280 ~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
+......+..++-.++.++....|+++.|.+......+..+...+..+.+.+..+.+-.+..+|+.++.+.
T Consensus 251 ~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 251 WLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444446778889999999999999999999999999999999999999999999988653
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.36 E-value=1.9e-12 Score=143.30 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=72.0
Q ss_pred CCCChhHHHHHHHHHHHcc----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCC
Q 007152 508 VRLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 583 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~----~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G 583 (616)
..+||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.+.....||+.++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3699999999999999996 589999999999999999999999999988789999999999999999999999875
Q ss_pred E
Q 007152 584 E 584 (616)
Q Consensus 584 ~ 584 (616)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 434
>PRK14079 recF recombination protein F; Provisional
Probab=99.33 E-value=1.9e-11 Score=128.34 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=63.1
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEE
Q 007152 508 VRLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 578 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll---------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Ii 578 (616)
.-+|+||++++++|+.|. .+||+++||||+|.||+.....+.+.|... ..+.|.-| +.-+.+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcC---CCCCCCceEE
Confidence 367999999999999998 899999999999999999999998888543 23433333 3456799999
Q ss_pred EEeCCEEEEecC
Q 007152 579 VVSDGEIVESGT 590 (616)
Q Consensus 579 vl~~G~Ive~G~ 590 (616)
++++|++..+.+
T Consensus 337 ~~~~~~~~~~~~ 348 (349)
T PRK14079 337 RIEAGVFTPEAP 348 (349)
T ss_pred EEeccEecCCCC
Confidence 999999865443
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=2.1e-12 Score=126.32 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=85.0
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc-CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER-FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 463 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g-~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIr 463 (616)
+++.+|+++++.+|++++|.||||+||||+++.+++ .+.++.|...... . -.++|.+|=-. .-.-.
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~--~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLT--RMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEE--EecCc
Confidence 478999999999999999999999999999999999 7788888765432 1 12333222111 00112
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
|++.-+. ..| ..+-+|++-.=.-..+++++|||||.++.|+.
T Consensus 85 d~~~~~~------------------StF--------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 85 DSIQHGM------------------STF--------------------MVELSETSHILSNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred ccccccc------------------chH--------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence 2221110 011 11122222221223579999999996666544
Q ss_pred HH----HHHHHHHHHHhCCCeEEEEecCchhhhhc
Q 007152 544 SE----YLVQDAMDSLMKGRTVLVIAHRLSTVQSA 574 (616)
Q Consensus 544 te----~~i~~~l~~~~~~~T~I~ItHrl~~l~~a 574 (616)
.. ..+++.+.+. ++.|+|++||..+..+..
T Consensus 127 d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 127 DGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 33 3344444433 478999999999876544
No 436
>PRK13695 putative NTPase; Provisional
Probab=99.31 E-value=3.4e-12 Score=120.92 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeC--cCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCC
Q 007152 506 RGVRLSGGQKQRVAIARALMMNPRILLLDE--ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 583 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAll~~p~iliLDE--pTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G 583 (616)
....+||+++-+..+++..+++|+++++|| |+..+|+...+.+.+.+ ..++++|+++|+-..-..+|+|..+.+|
T Consensus 75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCc
Confidence 345699999999999999999999999999 55555655544444444 2478999999997666789999999999
Q ss_pred EEEEe
Q 007152 584 EIVES 588 (616)
Q Consensus 584 ~Ive~ 588 (616)
+|.+-
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 99876
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.29 E-value=4.5e-11 Score=118.14 Aligned_cols=144 Identities=13% Similarity=0.217 Sum_probs=83.9
Q ss_pred EeCCCEEEEECCCCCcHHHH-HHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHH-hcCCCC
Q 007152 395 LLSGSKIALVGPSGGGKSTI-ANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI-AYGCDG 472 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL-~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi-~~g~~~ 472 (616)
+++|+.+.|+|++||||||| .+.+.++.++.+..+++.. +-+++++ .++. .+|.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~----e~~~~~~------------------~~~~~~~g~-- 76 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST----QLTTTEF------------------IKQMMSLGY-- 76 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC----CCCHHHH------------------HHHHHHhCC--
Confidence 89999999999999999999 6899988766544444432 0111111 1111 1110
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc----CCCEEEEeCcCCCC----CHHH
Q 007152 473 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM----NPRILLLDEATSAL----DAES 544 (616)
Q Consensus 473 ~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~----~p~iliLDEpTSaL----D~~t 544 (616)
+.++ ....-.+ .++. + ...+|+++.++-.++|.+-. +|+++++||||+.+ |+..
T Consensus 77 --~~~~---~~~~~~l-~~~~---------~---~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 77 --DINK---KLISGKL-LYIP---------V---YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred --chHH---HhhcCcE-EEEE---------e---cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 0010 0000000 0000 0 02356776666555554433 69999999999999 7776
Q ss_pred HHHHHHHHHHHhC-CCeEEEEecCchhh--------h-hcCEEEEEe
Q 007152 545 EYLVQDAMDSLMK-GRTVLVIAHRLSTV--------Q-SADTVAVVS 581 (616)
Q Consensus 545 e~~i~~~l~~~~~-~~T~I~ItHrl~~l--------~-~aD~Iivl~ 581 (616)
.+.+.+.++.+.+ ++|+++ ||..... + .||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 7778888876643 565544 5654432 2 258888886
No 438
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.29 E-value=2.4e-08 Score=102.00 Aligned_cols=225 Identities=15% Similarity=0.121 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 50 VALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKN 129 (616)
Q Consensus 50 l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 129 (616)
++.++.+.+++......+.+.+.+...+ ...++..+..++++.+...++.....|+...++.+....+...
T Consensus 34 ~l~l~~~~lsv~~~~~~g~~~~aL~~~d---------~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~ 104 (281)
T PF06472_consen 34 LLLLARVYLSVRINFWNGDFYNALQQKD---------LQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRH 104 (281)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666777777888888876542 2233444445556666677777788888888899999999999
Q ss_pred HHHHHHcCCchhhccc----CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHH
Q 007152 130 LFSHLINQEIAFYDVT----RTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL-LALVVVPAI 204 (616)
Q Consensus 130 ~~~~l~~~~~~~~~~~----~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l-i~l~~~~~~ 204 (616)
+.++.++-. .+|+-. ...+-=+|+++|++.+.+........++..++.++.+...++..++++++ ++++..++.
T Consensus 105 ~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~ 183 (281)
T PF06472_consen 105 LHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILG 183 (281)
T ss_pred HHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 999988777 555532 23466789999999999999999999999999999999999998888887 555566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 205 SVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAA 284 (616)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (616)
..+..+++++..+...+.++..+++........++.+.|=.++.|+.+.++..+...+..+...+..+....+..+..+.
T Consensus 184 t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~~ 263 (281)
T PF06472_consen 184 TLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNFY 263 (281)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999988888877777766666665555544
No 439
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.29 E-value=3.5e-11 Score=126.83 Aligned_cols=63 Identities=35% Similarity=0.421 Sum_probs=56.9
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh
Q 007152 508 VRLSGGQKQRVAIARALMM---------NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 572 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~---------~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~ 572 (616)
..+|.||+++++||.++.. +|||++||||+|.||+...+.+.+.|.+. +.+++++||++..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999754 579999999987654
No 440
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.29 E-value=3e-12 Score=130.47 Aligned_cols=171 Identities=24% Similarity=0.348 Sum_probs=121.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE-----------ECCEeCCCC----CHHHHhc--ccEEEccCCCcC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL-----------LNGVPLVEI----SHEHLHR--KISIVSQEPVLF 458 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~-----------idg~~i~~~----~~~~~r~--~i~~v~Q~~~lf 458 (616)
+||+..++||.+|-||||-+|.|+|-.+|.-|.-- .-|-++..+ ..+.++. ..-||.|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 58999999999999999999999999999877431 111111111 1111221 123555555556
Q ss_pred CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC
Q 007152 459 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 538 (616)
Q Consensus 459 ~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS 538 (616)
.+++.+++.--. +.+...+++...+|....+ ..-..||||+-||.+||-+...++|++++|||.|
T Consensus 178 k~~v~~~l~~~~----~r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 178 KGTVGSLLDRKD----ERDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHh----hcccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 667777765322 1223445555555443332 2235799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEe
Q 007152 539 ALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVS 581 (616)
Q Consensus 539 aLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~ 581 (616)
-||.+..-.--..|+.+. .++-+|+|-|+++.+.. .|-|.++-
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999998877777787765 68899999999999886 68777774
No 441
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.27 E-value=3e-11 Score=132.39 Aligned_cols=95 Identities=32% Similarity=0.481 Sum_probs=85.1
Q ss_pred cCCCCCCChhHHHHHHHHHHHccC--CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE
Q 007152 504 GERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 504 ge~G~~LSGGQrQRlalARAll~~--p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
.....+|||||.|||-||+.+-.+ -=++|||||+.+|-+.--.++++.|++++ .|.|+|+|-|+.++++.||+|+=|
T Consensus 476 ~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDi 555 (935)
T COG0178 476 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDI 555 (935)
T ss_pred cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEee
Confidence 345679999999999999999887 35889999999999997778888888776 589999999999999999999988
Q ss_pred ------eCCEEEEecChhHHhhcC
Q 007152 581 ------SDGEIVESGTHEELLSKG 598 (616)
Q Consensus 581 ------~~G~Ive~G~~~eL~~~~ 598 (616)
+.|+|+.+|+++|++++.
T Consensus 556 GPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 556 GPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred CCCCCcCCCEEEEccCHHHHHhCC
Confidence 579999999999999876
No 442
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.23 E-value=5.4e-11 Score=136.48 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHh-CCCeEEEEecCchhhhhc-CEEEEEe
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSA-DTVAVVS 581 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~-l~~~~-~~~T~I~ItHrl~~l~~a-D~Iivl~ 581 (616)
.+-+++|+|++|+..|+|++ .+|+++|||||++++|+.....+..+ +..+. .+.++|++||..+....+ |+.. +.
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~-v~ 463 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG-VE 463 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC-eE
Confidence 34478999999999999999 89999999999999999977777554 44332 478999999998877654 4433 33
Q ss_pred CCEEE
Q 007152 582 DGEIV 586 (616)
Q Consensus 582 ~G~Iv 586 (616)
++.+.
T Consensus 464 ~~~~~ 468 (782)
T PRK00409 464 NASVE 468 (782)
T ss_pred EEEEE
Confidence 45543
No 443
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=99.20 E-value=1.1e-07 Score=91.31 Aligned_cols=174 Identities=15% Similarity=0.144 Sum_probs=133.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 36 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 115 (616)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (616)
..++++++++.+...+.+...++.++.|++.|..||.+.+++. ...+.+.++.++..++...++..-
T Consensus 3 ~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~-------------~~~~~~~~~~l~~~~igaaRR~~D 69 (237)
T PF13748_consen 3 AIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV-------------WQALMYAALVLLMWAIGAARRIYD 69 (237)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-------------HHHHHHHHHHHHHHHHhhhhHHHh
Confidence 4577899999999999999999999999999999999987631 112334444455556666777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007152 116 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 195 (616)
Q Consensus 116 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 195 (616)
.+.-.++..++-..++.+-. .+..+.+.+..|.+- ..++.+|+-..+|.++.+++++++.+++++.++.++++
T Consensus 70 TRvf~rIy~~la~~vi~~qr------~~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~ 142 (237)
T PF13748_consen 70 TRVFSRIYAELAVPVILSQR------QQGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGL 142 (237)
T ss_pred hHHHHHHHHHHhHHHHHHHH------HhCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554432 345678889999864 77788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 196 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATA 229 (616)
Q Consensus 196 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (616)
.+++.+.+...+...+.++..+...+.....++-
T Consensus 143 ~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~e 176 (237)
T PF13748_consen 143 ACLLILALFLLILPRFARRNYRLYRRLNNRLEKE 176 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999888888887778777766666555554433
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.19 E-value=4e-11 Score=123.89 Aligned_cols=143 Identities=18% Similarity=0.230 Sum_probs=98.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC
Q 007152 391 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 470 (616)
Q Consensus 391 isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~ 470 (616)
+++.+++|+.++|+|++|||||||+++|+++++|..|.+.++ |..++.... +..+.++.+... + +.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-------~----~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-------Q----GL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-------C----Cc
Confidence 557788999999999999999999999999999999988875 233332221 112222111100 0 00
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHH
Q 007152 471 DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD 550 (616)
Q Consensus 471 ~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~ 550 (616)
. ..+ ..=.++++|-.+|+++++|||.+ .+ ..+
T Consensus 203 ~-~~~----------------------------------------~~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~ 234 (308)
T TIGR02788 203 A-KVT----------------------------------------PKDLLQSCLRMRPDRIILGELRG---DE----AFD 234 (308)
T ss_pred C-ccC----------------------------------------HHHHHHHHhcCCCCeEEEeccCC---HH----HHH
Confidence 0 111 12245567778999999999997 22 233
Q ss_pred HHHHHhCC-CeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 007152 551 AMDSLMKG-RTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 551 ~l~~~~~~-~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
.++....+ .+++..+|-.+.....||+..|..|++...|...|.+
T Consensus 235 ~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 235 FIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 44444334 4669999999988889999999999999888877776
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.19 E-value=1.4e-10 Score=110.98 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=61.9
Q ss_pred cccccccCCCCCCChhHHH------HHHHHHHHccCCCEEEEeCcCCCCC---HHHHHHHHHHHHHHh-CCCeEEEEecC
Q 007152 498 KYQTFVGERGVRLSGGQKQ------RVAIARALMMNPRILLLDEATSALD---AESEYLVQDAMDSLM-KGRTVLVIAHR 567 (616)
Q Consensus 498 GldT~vge~G~~LSGGQrQ------RlalARAll~~p~iliLDEpTSaLD---~~te~~i~~~l~~~~-~~~T~I~ItHr 567 (616)
|....+......+|+||+| +...+.+.-.+|+++++||||+.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444445556778999998 4444444556899999999999999 666666666665543 47899999998
Q ss_pred chh---------h-hhcCEEEEEe
Q 007152 568 LST---------V-QSADTVAVVS 581 (616)
Q Consensus 568 l~~---------l-~~aD~Iivl~ 581 (616)
... + ..||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 3 4589999997
No 446
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.18 E-value=3.3e-12 Score=144.28 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 216 RELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRY-----SEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVI 290 (616)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (616)
++.............+.+.|.+.++.+||..+.|......| .+...+..+...+..........+...+......
T Consensus 29 ~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~ 108 (644)
T PRK10733 29 GRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFP 108 (644)
T ss_pred cccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHH
Confidence 33444444455567778889999999999999888766666 5555555555554444444444444555556667
Q ss_pred HHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCC
Q 007152 291 VVVIYGANLTITGSMTPG---ALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQD 367 (616)
Q Consensus 291 ~~~~~g~~~v~~g~~s~g---~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~ 367 (616)
+++++|+++++.|.++.| .+++|..+...+..| ..+...+..+.....+.+|+.++.+...+..
T Consensus 109 ~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------------ 175 (644)
T PRK10733 109 MLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------------ 175 (644)
T ss_pred HHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH------------
Confidence 788899999999999998 788888777777777 6666777777777888888888776432100
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
..+.+..++++| +.++||+|+||||+++.+++...
T Consensus 176 -------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 -------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122256666 99999999999999999998663
No 447
>PRK01156 chromosome segregation protein; Provisional
Probab=99.17 E-value=7e-11 Score=139.96 Aligned_cols=76 Identities=29% Similarity=0.388 Sum_probs=67.1
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-C--C-CeEEEEecCchhhhhcC
Q 007152 506 RGVRLSGGQKQRVAI------ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-K--G-RTVLVIAHRLSTVQSAD 575 (616)
Q Consensus 506 ~G~~LSGGQrQRlal------ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~--~-~T~I~ItHrl~~l~~aD 575 (616)
....|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.+.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999875 599999999999999999999999999988886432 2 2 48999999999999999
Q ss_pred EEEEEe
Q 007152 576 TVAVVS 581 (616)
Q Consensus 576 ~Iivl~ 581 (616)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 448
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.15 E-value=2.3e-11 Score=128.27 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=57.1
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC-EEEECCEeCCCCCHHHHhcccEEEccCC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNGVPLVEISHEHLHRKISIVSQEP 455 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~I~idg~~i~~~~~~~~r~~i~~v~Q~~ 455 (616)
.+|++||+++++||+++|+||||||||||++ .|+..|++| +|.+||.++...+..+++..= +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 788888888 799999999887765543322 787754
No 449
>PRK03918 chromosome segregation protein; Provisional
Probab=99.12 E-value=1.3e-10 Score=137.64 Aligned_cols=74 Identities=35% Similarity=0.439 Sum_probs=66.8
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE
Q 007152 508 VRLSGGQKQ------RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 508 ~~LSGGQrQ------RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
..|||||+| |+||||++.++|+++||||||++||+.+...+.+.|..+. .+.|+|+|||+.+....||++++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 479999999 5666778999999999999999999999999999998765 357999999999999999999999
Q ss_pred e
Q 007152 581 S 581 (616)
Q Consensus 581 ~ 581 (616)
+
T Consensus 867 ~ 867 (880)
T PRK03918 867 S 867 (880)
T ss_pred E
Confidence 7
No 450
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.09 E-value=9.5e-10 Score=116.67 Aligned_cols=168 Identities=21% Similarity=0.186 Sum_probs=117.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++-++++-.|+. ...+++++ |++.+|++++|+|++|+|||||++.|+|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 3556666666653 23577875 99999999999999999999999999999999988877666321
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc---
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--- 525 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--- 525 (616)
-+++|.+. +.+...++. .|.+=..-.+-|.|+|+|.+.+.+..
T Consensus 195 -----------~ev~e~~~-------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 195 -----------REVKDFIR-------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred -----------ccHHHHHH-------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 12333322 112221211 12222344678999999999999887
Q ss_pred ----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 526 ----MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 526 ----~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
.++-++++||+|...|+. +.|-..+.+.. .|.|..+-||-...++.|-+ .++|.|...++
T Consensus 241 fr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 241 FRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 678899999999999997 44444444443 46788888885556666665 37888875544
No 451
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.08 E-value=1.5e-10 Score=141.50 Aligned_cols=75 Identities=27% Similarity=0.329 Sum_probs=68.7
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEE
Q 007152 506 RGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAl----l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
....|||||+||++|||++ +++||++||||||++||+.+...+.+.|..+.++.++|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3457999999999999998 57889999999999999999999999998887778999999999999999999765
No 452
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.08 E-value=7.4e-10 Score=128.60 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=58.2
Q ss_pred HccCCCEEEEeCcCCCC-CHHHHHHHHHHHHHHh-CCCeEEEEecCchhh----------hhcCEEEEEeCCEEEEecC
Q 007152 524 LMMNPRILLLDEATSAL-DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 524 ll~~p~iliLDEpTSaL-D~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l----------~~aD~Iivl~~G~Ive~G~ 590 (616)
+..+|.++++|||+++| |+.+.+.+.+.++..+ .+.+++++||+++.+ +.||..++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6889999999998764 578999999999876 4799999999999877664
No 453
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.07 E-value=4e-10 Score=135.05 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCCCChhHHHHHHHHHHHcc----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hc
Q 007152 507 GVRLSGGQKQRVAIARALMM----------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SA 574 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~----------~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~a 574 (616)
-.+|||||++|++||+||.. +|++|+|||||++||+++...+.+.|..+. .|+||++|||..+... .+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36899999999999999985 799999999999999999999999998875 5789999999999865 58
Q ss_pred CEEEEEeCC
Q 007152 575 DTVAVVSDG 583 (616)
Q Consensus 575 D~Iivl~~G 583 (616)
|+|.|+..|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999754
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.02 E-value=5.6e-10 Score=107.90 Aligned_cols=118 Identities=28% Similarity=0.388 Sum_probs=76.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD 478 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~-~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~ 478 (616)
.+.|+||+||||||+++.|++.+++. .|.|..-..++. +... ...+++.|.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~------------------------ 54 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQR------------------------ 54 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeec------------------------
Confidence 58999999999999999999998754 566655443321 1000 001111110
Q ss_pred HHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCC
Q 007152 479 IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG 558 (616)
Q Consensus 479 i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~ 558 (616)
.+|.+...++. ++++++..+|+++++||+. |.++-..+.++ ...|
T Consensus 55 -----------------------~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~---a~~G 99 (198)
T cd01131 55 -----------------------EVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALTA---AETG 99 (198)
T ss_pred -----------------------ccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHH---HHcC
Confidence 11111112221 4889999999999999996 66654444443 3458
Q ss_pred CeEEEEecCchhhhhcCEEEEE
Q 007152 559 RTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 559 ~T~I~ItHrl~~l~~aD~Iivl 580 (616)
++++.++|..+.....||++.|
T Consensus 100 ~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 100 HLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred CEEEEEecCCcHHHHHhHHHhh
Confidence 8999999999988888888766
No 455
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.00 E-value=2.5e-09 Score=104.34 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=83.5
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-ccH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSI 462 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~TI 462 (616)
.+|-+|++|++++|++++|.||+|+||||+++.+....-. +.|.- ++.+ +..++++ ..+|. -.-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~----vpa~-------~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD----VPAK-------SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc----cCcc-------ccEeccc---cEEEEecCc
Confidence 4788999999999999999999999999999988765211 11110 0000 0011111 11121 122
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCH
Q 007152 463 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 542 (616)
Q Consensus 463 reNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~ 542 (616)
.||+..+.. .. .. +-+|++-.=....+|++++||||.++.|+
T Consensus 83 ~d~~~~~~S-tF-~~------------------------------------e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 83 RDDIMKGES-TF-MV------------------------------------ELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccccCcc-hH-HH------------------------------------HHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 333332211 01 11 22333221122257899999999999999
Q ss_pred HHHHHHHHH-HHHHhC--CCeEEEEecCchhhhhc
Q 007152 543 ESEYLVQDA-MDSLMK--GRTVLVIAHRLSTVQSA 574 (616)
Q Consensus 543 ~te~~i~~~-l~~~~~--~~T~I~ItHrl~~l~~a 574 (616)
.....+..+ ++.+.+ +.++|++||..+..+..
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 977777666 555543 78999999999886654
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.00 E-value=3.3e-09 Score=98.62 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=77.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 479 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i 479 (616)
++.|.|++|+||||+++.+++...+..|.+.+-+.+... .. ..++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~------------------~~~~~~~~~--------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EE------------------LTERLIGES--------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HH------------------HHHHHhhhh---------
Confidence 378999999999999999999987766666554322110 00 111110000
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH----------HHHHHH
Q 007152 480 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE----------SEYLVQ 549 (616)
Q Consensus 480 ~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~----------te~~i~ 549 (616)
....+++. ..+.......+.++.++++.+++.-.+|+++|+||+++-++.. ..+.+.
T Consensus 51 ------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~ 117 (165)
T cd01120 51 ------------LKGALDNL-IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELR 117 (165)
T ss_pred ------------hccccccE-EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHH
Confidence 00001111 1112222234555666889999999999999999999655543 334444
Q ss_pred HHHHHHh-CCCeEEEEecCchhh
Q 007152 550 DAMDSLM-KGRTVLVIAHRLSTV 571 (616)
Q Consensus 550 ~~l~~~~-~~~T~I~ItHrl~~l 571 (616)
+...... .+.|+|+++|.....
T Consensus 118 ~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 118 ELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHhcCCceEEEEEecCCcc
Confidence 4443333 378999999988644
No 457
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.00 E-value=6.9e-10 Score=135.70 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=74.0
Q ss_pred CcccccccCCC------CCCChhHHHHHHHHHHHc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 007152 497 EKYQTFVGERG------VRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 566 (616)
Q Consensus 497 ~GldT~vge~G------~~LSGGQrQRlalARAll----~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItH 566 (616)
.|++..+...| ..||||||++++||++|. ++||++|||||+++||+.....+.+.|..+.++.++|+|||
T Consensus 1056 ~~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~ 1135 (1164)
T TIGR02169 1056 GGLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSL 1135 (1164)
T ss_pred CCeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 35555554333 479999999999999997 57899999999999999999999999998877788999999
Q ss_pred CchhhhhcCEEEEEe
Q 007152 567 RLSTVQSADTVAVVS 581 (616)
Q Consensus 567 rl~~l~~aD~Iivl~ 581 (616)
+..++..||+++.+.
T Consensus 1136 ~~~~~~~~d~~~~~~ 1150 (1164)
T TIGR02169 1136 RSPMIEYADRAIGVT 1150 (1164)
T ss_pred cHHHHHhcceeEeEE
Confidence 999999999998774
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.99 E-value=2.1e-08 Score=90.16 Aligned_cols=117 Identities=35% Similarity=0.486 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCC-CEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIK-GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKAS 475 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~-G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~ 475 (616)
+|..+.|+||+||||||+++.+++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478999999999999999999999987765 5566555332221111111
Q ss_pred HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHH-----
Q 007152 476 SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD----- 550 (616)
Q Consensus 476 ~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~----- 550 (616)
............+++.++..+++|-..+|+++++||+.+..+.........
T Consensus 51 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 ------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred ------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 233344556788999999999999998899999999999999997776653
Q ss_pred --HHHHHhCCCeEEEEecC
Q 007152 551 --AMDSLMKGRTVLVIAHR 567 (616)
Q Consensus 551 --~l~~~~~~~T~I~ItHr 567 (616)
.......+..+|.++|.
T Consensus 107 ~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 107 LLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHHhcCCCEEEEEeCC
Confidence 22233456778888884
No 459
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.99 E-value=7.7e-10 Score=107.70 Aligned_cols=79 Identities=30% Similarity=0.422 Sum_probs=65.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHH
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYD------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 463 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~------------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIr 463 (616)
++|++++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 77898 599999999999988854 688899999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHH
Q 007152 464 ENIAYGCDGKASSADIENAAK 484 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~ 484 (616)
+|. +|. ..+.+.+++.
T Consensus 78 ~~~-y~~----~~~~i~~~l~ 93 (205)
T PRK00300 78 GNY-YGT----PRSPVEEALA 93 (205)
T ss_pred Ccc-ccC----cHHHHHHHHH
Confidence 984 553 3455655554
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.98 E-value=1.6e-09 Score=112.76 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCccee-----------ceeEEEeCCCEEEEEC
Q 007152 337 AAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLK-----------GITLKLLSGSKIALVG 405 (616)
Q Consensus 337 ~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~-----------~isl~I~~G~~vaIvG 405 (616)
...+.+|++++++.++....+ +....+.++|+||+|.||+. +++|+ |+++.|.+||+++|||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~~-----~e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG 175 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGDD-----PEKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA 175 (415)
T ss_pred ccccHhHHHHHhCCCccCCCC-----ccccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence 455678999999876542211 12234679999999999963 47897 9999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCC
Q 007152 406 PSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 406 ~sGsGKSTL~~lL~g~~~~~ 425 (616)
|+|+|||||++.|.+.+...
T Consensus 176 ~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCChhHHHHHHHHhhccc
Confidence 99999999999999998653
No 461
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.95 E-value=1.1e-08 Score=101.72 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=88.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 473 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~ 473 (616)
=+|+|+.+.|.|++|||||||+..++-..-...+. +.|+..+-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~-------------------~~y~~~e~------------------ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKK-------------------VYVITTEN------------------ 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCE-------------------EEEEEcCC------------------
Confidence 48999999999999999999999875221112233 33333321
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCccccccc---CCCCCCChhHHHHHHHHHHHcc--CCCEEEEeCcCCCC---CHHHH
Q 007152 474 ASSADIENAAKMANAHDFISNFPEKYQTFVG---ERGVRLSGGQKQRVAIARALMM--NPRILLLDEATSAL---DAESE 545 (616)
Q Consensus 474 ~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg---e~G~~LSGGQrQRlalARAll~--~p~iliLDEpTSaL---D~~te 545 (616)
+.+++.+-++..+.+ ..+-+..|+-..+. +.....|.++.+.+..++..+. +|+++++||||+.+ |.+.-
T Consensus 64 -~~~~~~~~~~~~g~~-~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~ 141 (234)
T PRK06067 64 -TSKSYLKQMESVKID-ISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDI 141 (234)
T ss_pred -CHHHHHHHHHHCCCC-hhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHH
Confidence 111222222222211 00000111111110 1223456788999999999997 89999999999654 44444
Q ss_pred HHHHHHHHHH-hCCCeEEEEecCchh-------h-hhcCEEEEEeC
Q 007152 546 YLVQDAMDSL-MKGRTVLVIAHRLST-------V-QSADTVAVVSD 582 (616)
Q Consensus 546 ~~i~~~l~~~-~~~~T~I~ItHrl~~-------l-~~aD~Iivl~~ 582 (616)
..+.+.++.+ ..+.|+++++|.... + -.+|-++.|+.
T Consensus 142 ~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 142 LNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 4554445443 357899999997653 2 23677777763
No 462
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.88 E-value=2.7e-09 Score=106.87 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=53.4
Q ss_pred CCCChhHHHHHHHHHHHccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhh
Q 007152 508 VRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTV 571 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p---~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l 571 (616)
..+|.|++|.+.|+-+++..+ .++++|||-++|+|...+.+.+.+.+..+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 346999999999999998776 89999999999999999999999987765 78899999998765
No 463
>PRK02224 chromosome segregation protein; Provisional
Probab=98.85 E-value=5.4e-09 Score=123.89 Aligned_cols=75 Identities=33% Similarity=0.456 Sum_probs=66.2
Q ss_pred CCCChhHHH------HHHHHHHHccC------CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEecCchhhhh
Q 007152 508 VRLSGGQKQ------RVAIARALMMN------PRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS 573 (616)
Q Consensus 508 ~~LSGGQrQ------RlalARAll~~------p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~-~T~I~ItHrl~~l~~ 573 (616)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+.+.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999863 267999999999999999999998887653 3 479999999999999
Q ss_pred cCEEEEEeC
Q 007152 574 ADTVAVVSD 582 (616)
Q Consensus 574 aD~Iivl~~ 582 (616)
||+++.++.
T Consensus 860 ad~~~~~~~ 868 (880)
T PRK02224 860 ADDLVRVEK 868 (880)
T ss_pred cCeeEEeec
Confidence 999999964
No 464
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.84 E-value=7.5e-09 Score=123.53 Aligned_cols=75 Identities=33% Similarity=0.391 Sum_probs=64.4
Q ss_pred CCCCChhHHHHHHHHHHHcc--------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhc-CE
Q 007152 507 GVRLSGGQKQRVAIARALMM--------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA-DT 576 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~--------~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~a-D~ 576 (616)
-.+|||||+|+++|||||.. +|++++|||||++||+.+-..+++.|..+. .|+||++|||-....+.. .+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999995 899999999999999999999999998875 689999999977776554 44
Q ss_pred EEEEe
Q 007152 577 VAVVS 581 (616)
Q Consensus 577 Iivl~ 581 (616)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 44443
No 465
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.80 E-value=4.6e-08 Score=90.02 Aligned_cols=84 Identities=19% Similarity=0.289 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEE
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 586 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Iv 586 (616)
..|-|+-=-=-+.|.+ ++.-|+|||||-|+|-+.-+-.+...|+++. .|.-+|+.||.+=.+.. --+|+-++.+.+
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~- 206 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI- 206 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-
Confidence 4588887666666766 6678999999999999999999999998875 57789999999977654 467888887775
Q ss_pred EecChhHH
Q 007152 587 ESGTHEEL 594 (616)
Q Consensus 587 e~G~~~eL 594 (616)
+.-+++|.
T Consensus 207 ~~~~fe~t 214 (233)
T COG3910 207 EERDFEET 214 (233)
T ss_pred cccchHHH
Confidence 44456554
No 466
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.76 E-value=1.5e-08 Score=107.81 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=71.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC---CEeCCCCCHHHH
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN---GVPLVEISHEHL 444 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id---g~~i~~~~~~~~ 444 (616)
+.++.++++..|..+ ..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~TG--i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRTG--VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCCC--cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 468999999999643 46888885 999999999999999999999999999999999999885 677776655443
Q ss_pred ----hcccEEEccCC
Q 007152 445 ----HRKISIVSQEP 455 (616)
Q Consensus 445 ----r~~i~~v~Q~~ 455 (616)
++.|++|+|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999965
No 467
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.70 E-value=2.4e-07 Score=96.83 Aligned_cols=172 Identities=27% Similarity=0.354 Sum_probs=119.3
Q ss_pred EEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH-cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEcc
Q 007152 375 VWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQ 453 (616)
Q Consensus 375 vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~-g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q 453 (616)
|+|..|.+ -.+.+ +-||+| .+.|||..--|||||++.|. |-|+.--| ||.+. +--.+
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE~-----------VVT~~- 284 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGREF-----------VVTDP- 284 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCceE-----------EEECC-
Confidence 67777653 23444 478999 99999999999999999874 67776555 56321 11111
Q ss_pred CCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 007152 454 EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLL 533 (616)
Q Consensus 454 ~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliL 533 (616)
+. ... .+.| -...+.+.+..||.+||.|.||.-- --.+=||---|=-.|..|+=..+++|++
T Consensus 285 ~a----------vki----rAED---GR~V~~vDISpFI~~LP~g~dT~~F-sT~~ASGSTSqAAnI~EAlE~Ga~~LLi 346 (448)
T PF09818_consen 285 DA----------VKI----RAED---GRSVEGVDISPFINNLPGGKDTTCF-STENASGSTSQAANIMEALEAGARLLLI 346 (448)
T ss_pred Cc----------eEE----EecC---CceEeCccchHHHhhCCCCCCCCcc-cccCCCchHHHHHHHHHHHHcCCCEEEE
Confidence 11 000 1111 1345567889999999999998832 2346699999999999999999999999
Q ss_pred eCcCCCC-----CHHHHHHH----------HHHHHHH---hCCCeEEEEecCchhhhhcCEEEEEeCCEEE
Q 007152 534 DEATSAL-----DAESEYLV----------QDAMDSL---MKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 586 (616)
Q Consensus 534 DEpTSaL-----D~~te~~i----------~~~l~~~---~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Iv 586 (616)
||=|||- |..-++.| .+.++++ ..-.|++++.---.++..||+|+.||+=+-.
T Consensus 347 DEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 347 DEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred cCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 9999996 55556555 2233333 3334555555555689999999999987654
No 468
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.70 E-value=0.00028 Score=70.99 Aligned_cols=237 Identities=16% Similarity=0.079 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 007152 96 SIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRN 175 (616)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~ 175 (616)
.++.+.++..++..+..++......|-...+....+++-.++ ++..---+|+..|+-+....+-.....++.+
T Consensus 61 ~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~s 133 (315)
T PF05992_consen 61 NFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRS 133 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555666666667777777777777765544 3444456899999999999888888888888
Q ss_pred HHHHHHHHHHHHHHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHH
Q 007152 176 LSTAFIGLGFMFATSWKLT-------------LLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRT 242 (616)
Q Consensus 176 ~~~~i~~~~~l~~~~~~l~-------------li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ 242 (616)
+++.+.++-+++.++-.+. ..+++...+..++....+.++-....+.++..+.+.+.+ +-|=..
T Consensus 134 imtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeL---V~gED~ 210 (315)
T PF05992_consen 134 IMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKEL---VYGEDD 210 (315)
T ss_pred HHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHH---HhcCcc
Confidence 8888888888877664333 122222333334445566777777777777766666633 222222
Q ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 007152 243 VRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGS 322 (616)
Q Consensus 243 Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~ 322 (616)
.-....+...+.|.+...++.+......... .+......+..+.-.++.+.-+..|.+|.|.+..+.....++.+
T Consensus 211 -~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfn----i~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~ 285 (315)
T PF05992_consen 211 -ANRAQPPTLRELFSNVRRNYFRLYFHYMYFN----IARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRS 285 (315)
T ss_pred -cccCCchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 2223334445556655555555544443333 22222333333334444556678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 323 SVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
+++.+...+..+.+-....+|+.++
T Consensus 286 sfq~lv~~W~tivEL~Si~kRL~~F 310 (315)
T PF05992_consen 286 SFQYLVNSWTTIVELRSIYKRLRAF 310 (315)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 469
>PRK01889 GTPase RsgA; Reviewed
Probab=98.69 E-value=1.5e-08 Score=106.70 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=93.5
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHh
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 467 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~ 467 (616)
++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+.++|+.+-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 566666788999999999999999999999999999999999998754322 23456899999999999988888888
Q ss_pred cCCCCC---CCHHHHHHHHHHcCchHHHHcCCCccc--ccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 468 YGCDGK---ASSADIENAAKMANAHDFISNFPEKYQ--TFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 468 ~g~~~~---~~~~~i~~al~~a~l~~~i~~Lp~Gld--T~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
+..+.. ....++.+.++.|...+-...-..|-. .-+.+ .++| ++|..--+.|+++
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~--~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIEN--GELD---ERRLQSYRKLQRE 321 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHc--CCCC---HHHHHHHHHHHHH
Confidence 875421 112456666666665544333332311 11112 2344 7788877777755
No 470
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.67 E-value=4.5e-07 Score=106.01 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=47.4
Q ss_pred HHHHHccCCCEEEEeCcCCCC-CHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh
Q 007152 520 IARALMMNPRILLLDEATSAL-DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 573 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaL-D~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~ 573 (616)
|+|++..+|.++++|||++.| |+.+.+.+.+.++..+ .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 7889999999887764 57899999999987653
No 471
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.65 E-value=5.9e-08 Score=96.83 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=36.3
Q ss_pred HHccCCCEEEEeCcCCC------CCHHHHHHHHHHHHHHh--CCCeEEEEecCc
Q 007152 523 ALMMNPRILLLDEATSA------LDAESEYLVQDAMDSLM--KGRTVLVIAHRL 568 (616)
Q Consensus 523 All~~p~iliLDEpTSa------LD~~te~~i~~~l~~~~--~~~T~I~ItHrl 568 (616)
+..++|+++|+| |+++ .|+.....+.+.+.++. .+.|+++++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7654 68888888888887765 378999999976
No 472
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=2.1e-08 Score=106.58 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=66.3
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---CEEEECCEeCCCCCHHHH------hcccEEEccCC
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNGVPLVEISHEHL------HRKISIVSQEP 455 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~---G~I~idg~~i~~~~~~~~------r~~i~~v~Q~~ 455 (616)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.++.++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3589999 9999999999999999999999999999999886 444455666666554544 45799999998
Q ss_pred CcCC-ccHHHHHhc
Q 007152 456 VLFN-CSIEENIAY 468 (616)
Q Consensus 456 ~lf~-~TIreNi~~ 468 (616)
..+. -++.+|...
T Consensus 222 s~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 SPLMRIKATELCHA 235 (434)
T ss_pred ChhhhHHHHHHHHH
Confidence 7764 477777654
No 473
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.61 E-value=5.1e-08 Score=93.35 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=58.4
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC--cC-CccHH
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV--LF-NCSIE 463 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~--lf-~~TIr 463 (616)
..+=+.+.+++|+.++|+||+|||||||++.|+|+++|++|.|.+.+.+-...+ .+..+.++.|.+. .+ .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455567789999999999999999999999999999999999999775433322 2345666665543 22 24666
Q ss_pred HHHhc
Q 007152 464 ENIAY 468 (616)
Q Consensus 464 eNi~~ 468 (616)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 66643
No 474
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.56 E-value=1.6e-08 Score=110.98 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--HcCCCCCCCEEEECCEeCCCCCHHHHhc---ccEEEccCCCcCCccHHHHHhc
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLI--ERFYDPIKGKILLNGVPLVEISHEHLHR---KISIVSQEPVLFNCSIEENIAY 468 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL--~g~~~~~~G~I~idg~~i~~~~~~~~r~---~i~~v~Q~~~lf~~TIreNi~~ 468 (616)
=+++|..+.|.|++|||||||+.-. .|..++.+..+++... -+++++++ .+++-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4899999999999999999999966 3555445677777652 24455543 34544443210 011222
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH--HHHccCCCEEEEeCcCCCCCHHHHH
Q 007152 469 GCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA--RALMMNPRILLLDEATSALDAESEY 546 (616)
Q Consensus 469 g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA--RAll~~p~iliLDEpTSaLD~~te~ 546 (616)
-.+ .........++..+++++++.++ ..+|+||+||+.|+ .++..+|+.. ....+
T Consensus 88 ~~~--~~~~~~~~~~~~~~l~~~l~~i~-----------~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~ 144 (484)
T TIGR02655 88 LDA--SPDPEGQDVVGGFDLSALIERIN-----------YAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRR 144 (484)
T ss_pred Eec--CchhccccccccCCHHHHHHHHH-----------HHHHHhCCcEEEEeehhHhhhhcCch----------HHHHH
Confidence 111 01111112333344444444433 56899999999999 6776665443 34556
Q ss_pred HHHHHHHHHh-CCCeEEEEecCchh--------h-h-hcCEEEEEe
Q 007152 547 LVQDAMDSLM-KGRTVLVIAHRLST--------V-Q-SADTVAVVS 581 (616)
Q Consensus 547 ~i~~~l~~~~-~~~T~I~ItHrl~~--------l-~-~aD~Iivl~ 581 (616)
.+.+.++.+. .++|+|+++|..+. + + -||.|+.|+
T Consensus 145 ~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 145 EIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 6666666544 58999999998753 1 2 379999886
No 475
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.55 E-value=7.5e-08 Score=93.18 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=63.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH-----HHhcCCCCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE-----NIAYGCDGKA 474 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre-----Ni~~g~~~~~ 474 (616)
.++|+|+||||||||++.|.+++ ..|.+ .++++|.+...-+.++ +..+..|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~-------------------~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKV-------------------VIISQDSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCe-------------------EEEEecccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999998 23333 3444443332222221 1223333223
Q ss_pred CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 475 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 475 ~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
+.+.+.+.+......+. +.-...+.|.|++++-.+ .+++++++|+|.|.+..++.
T Consensus 60 ~~~~~~~~l~~l~~~~~-----------~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNGKS-----------VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCCCC-----------EeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 34444444443322211 111234567777665444 56889999999999998863
No 476
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.54 E-value=2.8e-07 Score=96.81 Aligned_cols=121 Identities=26% Similarity=0.323 Sum_probs=78.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 473 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~ 473 (616)
.+++..+.|.||+||||||+++.+++.+++ ..|.|..-..++.-. ......
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~------------------------ 170 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRS------------------------ 170 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccc------------------------
Confidence 457899999999999999999999997764 467665543221100 000000
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 007152 474 ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMD 553 (616)
Q Consensus 474 ~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~ 553 (616)
.+. ...+|..+.+ -.=++++||-.+||++++||+. |+++....+++
T Consensus 171 -----------------~i~------q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a-- 216 (343)
T TIGR01420 171 -----------------LIN------QREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA-- 216 (343)
T ss_pred -----------------eEE------ccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH--
Confidence 000 0112221111 1234778898999999999997 88887765554
Q ss_pred HHhCCCeEEEEecCchhhhhcCEEE
Q 007152 554 SLMKGRTVLVIAHRLSTVQSADTVA 578 (616)
Q Consensus 554 ~~~~~~T~I~ItHrl~~l~~aD~Ii 578 (616)
...|.+++...|..+.....||++
T Consensus 217 -a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 217 -AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred -HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 345889999999987766555554
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.54 E-value=9.2e-08 Score=103.14 Aligned_cols=162 Identities=17% Similarity=0.227 Sum_probs=92.8
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcC
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYG 469 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g 469 (616)
+.++.+++|+.+++|||||+||||++..|++.+.+..|.. .|++|++|+ |.-+..||+.+.
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHH
Confidence 3444566899999999999999999999999887776642 678999998 667788888763
Q ss_pred C-----CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC-----CEEEEeCcCCC
Q 007152 470 C-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-----RILLLDEATSA 539 (616)
Q Consensus 470 ~-----~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p-----~iliLDEpTSa 539 (616)
. |.....+....... +..+.+.....|..-|..-. ...+.-+.++++++ .+|+||.+|..
T Consensus 309 AeilGVpv~~~~~~~Dl~~a-------L~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 309 GKILGVPVHAVKDAADLRLA-------LSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHhCCCeeccCCchhHHHH-------HHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 2 10011111111111 23343433444444332211 11223333444443 68999998877
Q ss_pred CCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh----------hhcCEEEEEeCCEEE
Q 007152 540 LDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSADTVAVVSDGEIV 586 (616)
Q Consensus 540 LD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l----------~~aD~Iivl~~G~Iv 586 (616)
-| +.+.++... .+.+-+++|+=-++. +.-=-|..+-.|+=|
T Consensus 379 ~~------l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 379 DT------LNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HH------HHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 22 333333322 356777788744321 112235666677643
No 478
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.54 E-value=1e-07 Score=100.11 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=66.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCCEEEECCEeCCCCCHHHHhcccEEEccCC-----CcCCccHHHHHh
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP---IKGKILLNGVPLVEISHEHLHRKISIVSQEP-----VLFNCSIEENIA 467 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~---~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~-----~lf~~TIreNi~ 467 (616)
++|..++|+||+||||||+++.|++++.+ ..+.|.....++ ++..+.+++..++++|.. .-|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999843 234676666555 477777777778888864 358899999998
Q ss_pred cCCCC-----CC-CHHHHHHHHHHc
Q 007152 468 YGCDG-----KA-SSADIENAAKMA 486 (616)
Q Consensus 468 ~g~~~-----~~-~~~~i~~al~~a 486 (616)
.. |. +. +.+.+..|++.+
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEAA 234 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHHH
Confidence 73 52 12 445566777773
No 479
>PRK08149 ATP synthase SpaL; Validated
Probab=98.49 E-value=2.2e-07 Score=98.79 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=61.0
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---CEEEECCEeCCCCCHHHHh----cccEEEccCC
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNGVPLVEISHEHLH----RKISIVSQEP 455 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~---G~I~idg~~i~~~~~~~~r----~~i~~v~Q~~ 455 (616)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 3589999 9999999999999999999999999999999987 9999999999888766665 5667776544
No 480
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.46 E-value=2.7e-07 Score=89.08 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=69.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 479 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i 479 (616)
+++|+|++|||||||++.+.+.+++..| +.+-..|.......++....++++|+..+. +..|-+.... . +.
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~--~---~~ 73 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETGGCPHTA--I---RE 73 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcCCCccce--e---cc
Confidence 6899999999999999999999888655 555555666666677777789999987652 1111111111 0 11
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 480 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 480 ~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
..+...+.+.++..++|++..+.|+..|..+|.-.
T Consensus 74 ~~~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 74 DASMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 11122334456666777777778887787666655
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.43 E-value=2.2e-07 Score=88.94 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=49.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV 456 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~ 456 (616)
.|+.++|+||||||||||+++|++.+.| .+.+++..+........++.+++++|+.+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFF 57 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHH
Confidence 3789999999999999999999999876 58888888887776777788999999853
No 482
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.42 E-value=1.8e-06 Score=92.68 Aligned_cols=182 Identities=20% Similarity=0.186 Sum_probs=109.6
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
..+++++ +++.+|++++|+|+||+|||||++.|+|..+|+.|.+...|..-+++.. +.+. +..+.-.+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~--~~~~---------~~~~~~l~ 218 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVRE--FIEH---------DLGEEGLK 218 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHH--HHHH---------Hhcccccc
Confidence 4689999 9999999999999999999999999999999998877776654433221 1100 01000011
Q ss_pred HH-hcCCC-CCCCHHHHHHHHHHcCchHHHHcCCCccccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEEeCc--CCC
Q 007152 465 NI-AYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEA--TSA 539 (616)
Q Consensus 465 Ni-~~g~~-~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg-e~G~~LSGGQrQRlalARAll~~p~iliLDEp--TSa 539 (616)
+- .+.++ .+..-+++..+.-.+-..++... +|.|-.+= +.=.+ .|+|+ |.= =+.+.|| +.+
T Consensus 219 ~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr----------~A~A~-REi-sl~~ge~P~~~G 284 (440)
T TIGR01026 219 RSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTR----------FAMAQ-REI-GLAAGEPPATKG 284 (440)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHH----------HHHHH-HHH-HHhcCCCCcccc
Confidence 11 11111 12234455444444444455543 46664442 21111 12221 000 0123454 558
Q ss_pred CCHHHHHHHHHHHHHHh-CCC-------eEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 007152 540 LDAESEYLVQDAMDSLM-KGR-------TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 540 LD~~te~~i~~~l~~~~-~~~-------T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 593 (616)
.|+..-..+-+-+.+.. .++ |+++-+|++ .=.-+|++.-+.+|+|+-.+.-.+
T Consensus 285 ypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 285 YTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred cChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchhh
Confidence 99998888877776654 346 788889987 344689999999999997765433
No 483
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.41 E-value=8.4e-07 Score=107.77 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=36.2
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCCEEEECC
Q 007152 391 ITLKLLSGSKIALVGPSGGGKSTIANLIERFY-DPIKGKILLNG 433 (616)
Q Consensus 391 isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~-~~~~G~I~idg 433 (616)
+++..++++.++|+|++|+|||||++.+.+.. ...+|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 46677889999999999999999999995544 45689999876
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.40 E-value=2.5e-07 Score=87.55 Aligned_cols=65 Identities=20% Similarity=0.276 Sum_probs=46.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc-ccEEEccCCCc-CCccHHHHHh
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR-KISIVSQEPVL-FNCSIEENIA 467 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~-~i~~v~Q~~~l-f~~TIreNi~ 467 (616)
+|+.++|+|+||||||||++.|++++.+ +.++|.++.. ...+|+ ..++.+|+... ...+..+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999877 6899988743 334443 35566665432 2234444443
No 485
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.36 E-value=3.4e-07 Score=89.28 Aligned_cols=43 Identities=33% Similarity=0.376 Sum_probs=35.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN 459 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~ 459 (616)
|+|+.++|+|+||||||||++.|.+++++ ..+++++||.++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~ 46 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKD 46 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccC
Confidence 68999999999999999999999999764 14667777776654
No 486
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.34 E-value=1.5e-05 Score=93.25 Aligned_cols=189 Identities=15% Similarity=0.210 Sum_probs=107.2
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc--EEE---ccC-----CCcCC
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI--SIV---SQE-----PVLFN 459 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i--~~v---~Q~-----~~lf~ 459 (616)
.+||.+.++..++|+|+||||||||++.|++.+....+.|.+-+.+-. .+.+-+.+ .|+ +-. |+=..
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~---~~~~~~a~gG~y~~i~~~~~~~~NPf~l~ 514 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG---AEIFIRALNGVYTVIEPRLKCNFNPLQLD 514 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC---HHHHHHhcCCEEEEecCCCCcccCCCCCC
Confidence 467888889999999999999999999999998888888877654432 11121111 111 212 22112
Q ss_pred ccHHHHHhc---------C-CCCCCCHH---HHHHHHHHc--------CchHHHHcCC----------------Cc----
Q 007152 460 CSIEENIAY---------G-CDGKASSA---DIENAAKMA--------NAHDFISNFP----------------EK---- 498 (616)
Q Consensus 460 ~TIreNi~~---------g-~~~~~~~~---~i~~al~~a--------~l~~~i~~Lp----------------~G---- 498 (616)
+|- +|..+ . .....+++ .+.+|++.+ .+.++.+.|+ +|
T Consensus 515 ~~~-~~~~~l~~~l~~l~~~~~~~lt~~~~~~I~~av~~~~~~~~~~rtl~~l~~~l~~~~~~~L~~~L~~~~~~G~~g~ 593 (800)
T PRK13898 515 DTS-ENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAGRIAMWHGKGSHAA 593 (800)
T ss_pred CCh-HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhCChhhCcHHHHHHHhCcCCchHHHHHHHHHhcCCCcEE
Confidence 232 23221 0 00123322 244454332 1233333332 11
Q ss_pred -cc---ccc--------cCCCCCCCh-hHHHHHH-------HHHHHccCCCEEEEeCcCCCCC-HHHHHHHHHHHHHHh-
Q 007152 499 -YQ---TFV--------GERGVRLSG-GQKQRVA-------IARALMMNPRILLLDEATSALD-AESEYLVQDAMDSLM- 556 (616)
Q Consensus 499 -ld---T~v--------ge~G~~LSG-GQrQRla-------lARAll~~p~iliLDEpTSaLD-~~te~~i~~~l~~~~- 556 (616)
+| +.+ +=+...|.. .+-.... |.+.+-.+|.++++|||...|| +...+.+.+.++..+
T Consensus 594 ~Fd~~~d~l~~~~~~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK 673 (800)
T PRK13898 594 IFDNEEDLLDFQKARVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK 673 (800)
T ss_pred eecCCccccCCCCCcEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH
Confidence 11 011 101111211 2222121 1234556899999999999999 778888888887764
Q ss_pred CCCeEEEEecCchh----------hhhcCEEEEEeC
Q 007152 557 KGRTVLVIAHRLST----------VQSADTVAVVSD 582 (616)
Q Consensus 557 ~~~T~I~ItHrl~~----------l~~aD~Iivl~~ 582 (616)
.+..++++||.++. +++|+.-+.|-|
T Consensus 674 ~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 674 LNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred cCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 47789999999865 556776666655
No 487
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.34 E-value=1.2e-06 Score=103.78 Aligned_cols=76 Identities=28% Similarity=0.394 Sum_probs=66.6
Q ss_pred CCCCChhHHHH------HHHHHHHccC--CCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeEEEEecCchhhhhcCEE
Q 007152 507 GVRLSGGQKQR------VAIARALMMN--PRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTV 577 (616)
Q Consensus 507 G~~LSGGQrQR------lalARAll~~--p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~I~ItHrl~~l~~aD~I 577 (616)
-.+|||||+=. +|||..+-.+ -+.++|||||.+||+++-..+.+.|.++.. ++++|+|||..+....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 45899999875 4555666677 799999999999999999999999988775 69999999999999999999
Q ss_pred EEEeC
Q 007152 578 AVVSD 582 (616)
Q Consensus 578 ivl~~ 582 (616)
+.++.
T Consensus 893 i~V~k 897 (908)
T COG0419 893 IRVKK 897 (908)
T ss_pred EEEEe
Confidence 99864
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.34 E-value=8.5e-07 Score=84.29 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=47.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEE-----------CCEeCCCCCHHHHh-----cccEEEccCCCcCCc
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILL-----------NGVPLVEISHEHLH-----RKISIVSQEPVLFNC 460 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~i-----------dg~~i~~~~~~~~r-----~~i~~v~Q~~~lf~~ 460 (616)
|+.++|+|+||||||||++.|++.+.+. |.+.+ +|.++...+.+++. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 77777777776664 348888887655544
No 489
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.33 E-value=1.8e-06 Score=97.34 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCC--------CEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhc
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIK--------GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAY 468 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~--------G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~ 468 (616)
..+.+.|+||+|+|||||++++.++..+.. +-+.+||.++. ++...+. |-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i~-------------------~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREVT-------------------NPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHHh-------------------HHhc
Confidence 345699999999999999999999886544 44888886653 2322221 2223
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHH
Q 007152 469 GCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 548 (616)
Q Consensus 469 g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i 548 (616)
+...+...+...+.+...++.+....+ -..+||| +|+||| +..||+.....+
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~-----------v~~asgG----------------vL~LDE-i~~Ld~~~Q~~L 285 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGL-----------VTDAHGG----------------VLFIDE-IGELDPLLQNKL 285 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCc-----------hhhcCCC----------------eEEEec-cccCCHHHHHHH
Confidence 321011112233444555544332211 1246777 999999 799999999999
Q ss_pred HHHHHH
Q 007152 549 QDAMDS 554 (616)
Q Consensus 549 ~~~l~~ 554 (616)
.+.+++
T Consensus 286 l~~Le~ 291 (615)
T TIGR02903 286 LKVLED 291 (615)
T ss_pred HHHHhh
Confidence 888864
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.32 E-value=3.6e-07 Score=86.88 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=56.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYD------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~------------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
|++++|+||||||||||++.|++.++ |..|+ .+|.+..-++.+.+.+.+ +++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 33344 356666656666666653 57777877778777
Q ss_pred HhcCCCCCCCHHHHHHHHHH
Q 007152 466 IAYGCDGKASSADIENAAKM 485 (616)
Q Consensus 466 i~~g~~~~~~~~~i~~al~~ 485 (616)
. +| .+.+.+.++++.
T Consensus 76 ~-y~----~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG----TPKSPVEEALAA 90 (180)
T ss_pred e-eC----CcHHHHHHHHHC
Confidence 3 54 345566666654
No 491
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.29 E-value=1.1e-05 Score=79.92 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=31.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHH-cCCCCCCCEEEECC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIE-RFYDPIKGKILLNG 433 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~-g~~~~~~G~I~idg 433 (616)
-+++|+.+.|.|++|||||||+..++ ....+.++.+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999988654 23355556677765
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.28 E-value=6.9e-06 Score=74.20 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh------CCCeEEEEecCch
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM------KGRTVLVIAHRLS 569 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~------~~~T~I~ItHrl~ 569 (616)
.+.....++...++.++++||.-.. ++.....+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666677778889999999998765 5566667777776653 4667888888654
No 493
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1.2e-06 Score=107.05 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=55.3
Q ss_pred CCCCCChhHHHHHH----HHHH--------HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch
Q 007152 506 RGVRLSGGQKQRVA----IARA--------LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 569 (616)
Q Consensus 506 ~G~~LSGGQrQRla----lARA--------ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~ 569 (616)
....||||||||++ +|++ +..+|++++|||||++||+.+...+++.+.++ +.++|++||++.
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 35789999999996 6766 45799999999999999999999999999887 789999999984
No 494
>PLN02796 D-glycerate 3-kinase
Probab=98.28 E-value=3.4e-07 Score=94.17 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=52.4
Q ss_pred cceeceeEEE---eCCCE-----EEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCCCHHHHhc
Q 007152 386 MVLKGITLKL---LSGSK-----IALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 386 ~vL~~isl~I---~~G~~-----vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~~~~~~r~ 446 (616)
.+++++++.+ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+.......+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5788999888 67887 9999999999999999999999875 688999999887666666665
No 495
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.27 E-value=4.2e-07 Score=82.33 Aligned_cols=75 Identities=33% Similarity=0.479 Sum_probs=57.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC-------------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDP-------------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 466 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~-------------~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi 466 (616)
.++|+||||||||||++.|++.+++ ..|+ .+|++..-++.+++++. +.|+.++..++...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~- 74 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN- 74 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-
Confidence 3789999999999999999999764 3444 48888888888888764 568888888888888
Q ss_pred hcCCCCCCCHHHHHHHHH
Q 007152 467 AYGCDGKASSADIENAAK 484 (616)
Q Consensus 467 ~~g~~~~~~~~~i~~al~ 484 (616)
.+|.+ .+.+.++.+
T Consensus 75 ~yg~~----~~~i~~~~~ 88 (137)
T cd00071 75 YYGTS----KAAVEEALA 88 (137)
T ss_pred EecCc----HHHHHHHHh
Confidence 46533 445555443
No 496
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.26 E-value=1.3e-06 Score=85.25 Aligned_cols=69 Identities=20% Similarity=0.212 Sum_probs=49.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc---c--HHHHHhcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC---S--IEENIAYGC 470 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~---T--IreNi~~g~ 470 (616)
+++..|+|+|+||||||||++.|.+.+. ...+.+++||.+.++. + .+.+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999872 1268888999887754 2 344455665
Q ss_pred CCCCCHHHHHHHHHH
Q 007152 471 DGKASSADIENAAKM 485 (616)
Q Consensus 471 ~~~~~~~~i~~al~~ 485 (616)
|...+.+.+.+.+..
T Consensus 63 ~~~~~~~~l~~~l~~ 77 (209)
T PRK05480 63 PDAFDHDLLIEHLKA 77 (209)
T ss_pred cccccHHHHHHHHHH
Confidence 533455556655544
No 497
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.25 E-value=7.8e-07 Score=94.98 Aligned_cols=102 Identities=22% Similarity=0.271 Sum_probs=74.3
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEE---CCEeCCCCCHHHHh---cccEEE-----cc
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILL---NGVPLVEISHEHLH---RKISIV-----SQ 453 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~i---dg~~i~~~~~~~~r---~~i~~v-----~Q 453 (616)
.+++++ |++.+|++++|+|+||+|||||++.|+|+.++ +.|.|.+ .|.++.++..+.++ ...+++ +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 468887 99999999999999999999999999999844 4466766 55777777766665 235566 99
Q ss_pred CCC------cCCccHHHHHhcCCCC----CCCHHHHHHHHHHcCc
Q 007152 454 EPV------LFNCSIEENIAYGCDG----KASSADIENAAKMANA 488 (616)
Q Consensus 454 ~~~------lf~~TIreNi~~g~~~----~~~~~~i~~al~~a~l 488 (616)
+|. ....+|.|.+..-... ..+..++.++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 774 2345788888643221 1134567788888777
No 498
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.24 E-value=8.4e-07 Score=85.38 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=38.4
Q ss_pred ccCCCCCCChhHHHHHH--HHHHHcc-CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC
Q 007152 503 VGERGVRLSGGQKQRVA--IARALMM-NPRILLLDEATSALDAESEYLVQDAMDSLMK 557 (616)
Q Consensus 503 vge~G~~LSGGQrQRla--lARAll~-~p~iliLDEpTSaLD~~te~~i~~~l~~~~~ 557 (616)
++.+.-.+|+||+|++. +++.+-. +++++ |||++|.++-+.+.+.|.++.+
T Consensus 141 v~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 141 VLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 44455568999999987 6676644 34443 9999999999999999987654
No 499
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.23 E-value=3.1e-06 Score=84.18 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=52.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcC-CCC------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHh
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERF-YDP------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 467 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~-~~~------~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~ 467 (616)
+++|+.+.|+|++|||||||+.-++.. ..| .++.+++++.+ .++.+.+.+.. |.......++.+|+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i~ 89 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNIY 89 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCEE
Confidence 889999999999999999999988633 334 37889998865 34444443322 111112346778888
Q ss_pred cCCCCCCCHHHHHHHH
Q 007152 468 YGCDGKASSADIENAA 483 (616)
Q Consensus 468 ~g~~~~~~~~~i~~al 483 (616)
+..+ .+.+++.+.+
T Consensus 90 ~~~~--~~~~~l~~~l 103 (235)
T cd01123 90 VARA--YNSDHQLQLL 103 (235)
T ss_pred EEec--CCHHHHHHHH
Confidence 7654 3444444433
No 500
>PRK09183 transposase/IS protein; Provisional
Probab=98.20 E-value=4.7e-06 Score=83.94 Aligned_cols=52 Identities=21% Similarity=0.385 Sum_probs=38.2
Q ss_pred EEeEEEECCCCCCC---cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 372 LDDVWFAYPSRPNH---MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 372 ~~~vsf~Y~~~~~~---~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+++..|++....++ ..|.+++| +++|+.+.|+||+|+|||+|+..|+.....
T Consensus 74 l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 74 FEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred HhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44455555432221 23777888 999999999999999999999999766543
Done!