Query 007152
Match_columns 616
No_of_seqs 236 out of 2477
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-104 8E-109 957.0 77.8 582 27-609 58-654 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 1E-100 3E-105 857.7 71.8 575 28-612 8-582 (587)
3 4a82_A Cystic fibrosis transme 100.0 4E-100 1E-104 852.5 69.1 576 31-609 2-577 (578)
4 4f4c_A Multidrug resistance pr 100.0 3E-102 1E-106 938.7 55.5 577 30-612 739-1320(1321)
5 3qf4_B Uncharacterized ABC tra 100.0 4E-100 1E-104 855.1 66.3 573 28-612 22-594 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 2.1E-97 7E-102 831.9 79.5 568 30-609 12-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 1.5E-97 5E-102 833.0 75.4 569 29-609 11-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 3.2E-97 1E-101 832.5 76.3 578 30-612 6-587 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 4.4E-94 1.5E-98 865.4 62.9 582 28-610 32-627 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 1.5E-88 5.2E-93 817.2 60.6 578 30-611 692-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 4.1E-72 1.4E-76 572.7 28.9 280 329-611 13-292 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 2.3E-60 7.9E-65 474.1 32.0 239 368-608 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 1.7E-59 5.9E-64 471.4 30.5 241 368-610 16-256 (260)
14 1mv5_A LMRA, multidrug resista 100.0 1.2E-59 4E-64 468.7 21.5 237 370-609 2-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 1.5E-58 5.2E-63 467.1 29.3 242 368-610 15-259 (271)
16 3gd7_A Fusion complex of cysti 100.0 7.3E-56 2.5E-60 466.5 26.4 228 367-598 17-244 (390)
17 2cbz_A Multidrug resistance-as 100.0 1.6E-55 5.4E-60 436.8 25.1 226 369-610 3-231 (237)
18 2pze_A Cystic fibrosis transme 100.0 3.7E-55 1.3E-59 432.1 26.8 222 368-605 5-227 (229)
19 3tif_A Uncharacterized ABC tra 100.0 3.9E-53 1.3E-57 419.0 20.8 216 370-595 2-233 (235)
20 3tui_C Methionine import ATP-b 100.0 7.9E-53 2.7E-57 437.1 23.9 220 368-598 23-255 (366)
21 3gfo_A Cobalt import ATP-bindi 100.0 8E-53 2.7E-57 424.9 22.5 219 369-600 7-237 (275)
22 1ji0_A ABC transporter; ATP bi 100.0 1.3E-51 4.4E-56 409.7 25.4 220 369-597 6-229 (240)
23 2bbs_A Cystic fibrosis transme 100.0 1.3E-51 4.3E-56 419.3 23.0 217 368-605 39-256 (290)
24 1vpl_A ABC transporter, ATP-bi 100.0 4.4E-51 1.5E-55 408.5 25.7 215 368-597 14-236 (256)
25 4g1u_C Hemin import ATP-bindin 100.0 2.5E-51 8.5E-56 412.9 23.7 215 369-597 11-238 (266)
26 2olj_A Amino acid ABC transpor 100.0 3E-51 1E-55 411.0 23.7 216 369-598 24-250 (263)
27 2pcj_A ABC transporter, lipopr 100.0 5.1E-51 1.7E-55 401.1 21.9 209 369-591 4-223 (224)
28 2yz2_A Putative ABC transporte 100.0 1.6E-50 5.4E-55 407.9 25.1 215 370-598 3-229 (266)
29 1b0u_A Histidine permease; ABC 100.0 9.7E-51 3.3E-55 408.3 23.1 216 369-598 6-244 (262)
30 1g6h_A High-affinity branched- 100.0 1.3E-50 4.6E-55 406.5 22.3 211 369-593 7-239 (257)
31 3fvq_A Fe(3+) IONS import ATP- 100.0 1.3E-50 4.6E-55 420.4 22.9 216 369-598 4-230 (359)
32 2qi9_C Vitamin B12 import ATP- 100.0 3.2E-50 1.1E-54 400.6 23.2 209 369-596 4-222 (249)
33 3rlf_A Maltose/maltodextrin im 100.0 2.5E-50 8.4E-55 421.1 23.4 214 369-598 3-225 (381)
34 2ihy_A ABC transporter, ATP-bi 100.0 1.6E-50 5.3E-55 409.7 20.6 215 369-597 21-253 (279)
35 2onk_A Molybdate/tungstate ABC 100.0 5.9E-50 2E-54 396.8 23.0 209 370-598 2-218 (240)
36 2yyz_A Sugar ABC transporter, 100.0 1.3E-49 4.3E-54 414.6 25.7 215 369-599 3-226 (359)
37 2it1_A 362AA long hypothetical 100.0 8.6E-50 3E-54 416.2 23.1 214 369-598 3-225 (362)
38 1z47_A CYSA, putative ABC-tran 100.0 1.3E-49 4.6E-54 413.3 24.1 216 368-598 13-237 (355)
39 1v43_A Sugar-binding transport 100.0 3E-49 1E-53 413.6 25.2 214 369-598 11-233 (372)
40 3d31_A Sulfate/molybdate ABC t 100.0 2.2E-49 7.5E-54 411.5 24.0 212 370-598 2-219 (348)
41 2d2e_A SUFC protein; ABC-ATPas 100.0 8.7E-50 3E-54 399.0 20.2 211 369-593 3-230 (250)
42 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-49 4.6E-54 414.7 21.8 216 369-598 3-232 (353)
43 1g29_1 MALK, maltose transport 100.0 5.5E-49 1.9E-53 412.5 22.3 214 369-598 3-231 (372)
44 2zu0_C Probable ATP-dependent 100.0 5.9E-49 2E-53 396.4 20.7 214 369-595 20-253 (267)
45 2nq2_C Hypothetical ABC transp 100.0 1.5E-48 5.2E-53 390.0 20.7 202 369-597 4-218 (253)
46 2pjz_A Hypothetical protein ST 100.0 1.8E-48 6E-53 390.9 19.5 209 370-597 2-216 (263)
47 1sgw_A Putative ABC transporte 100.0 2.2E-47 7.6E-52 371.2 15.3 196 368-585 9-210 (214)
48 2v9p_A Replication protein E1; 100.0 1.8E-45 6.1E-50 374.5 -19.0 242 299-610 34-277 (305)
49 3bk7_A ABC transporter ATP-bin 100.0 3.5E-38 1.2E-42 351.1 17.0 200 369-596 357-563 (607)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 2.8E-38 9.6E-43 348.4 15.6 200 369-596 287-493 (538)
51 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-37 4.3E-42 342.3 18.0 201 368-595 268-476 (538)
52 2iw3_A Elongation factor 3A; a 100.0 4E-37 1.4E-41 353.2 18.5 199 369-590 671-981 (986)
53 3bk7_A ABC transporter ATP-bin 100.0 8.4E-37 2.9E-41 339.9 13.2 197 369-583 83-304 (607)
54 2iw3_A Elongation factor 3A; a 100.0 8.1E-35 2.8E-39 334.2 27.7 198 368-597 434-636 (986)
55 3j16_B RLI1P; ribosome recycli 100.0 3.2E-36 1.1E-40 334.6 15.4 199 373-597 350-560 (608)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 1.2E-36 4.2E-41 335.3 11.2 196 370-583 21-234 (538)
57 3ux8_A Excinuclease ABC, A sub 100.0 5.4E-36 1.8E-40 340.5 14.9 207 385-600 31-302 (670)
58 3ux8_A Excinuclease ABC, A sub 100.0 6.3E-36 2.2E-40 340.0 14.0 206 385-602 335-646 (670)
59 3pih_A Uvrabc system protein A 100.0 7.8E-35 2.7E-39 334.3 19.2 209 386-605 598-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 4.7E-34 1.6E-38 317.2 15.0 195 374-584 82-298 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-34 5.2E-39 317.7 9.7 194 373-584 3-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 3.6E-33 1.2E-37 318.0 14.8 216 368-602 501-833 (842)
63 4aby_A DNA repair protein RECN 100.0 1.4E-32 4.6E-37 295.8 15.9 201 387-589 50-381 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 3.8E-32 1.3E-36 309.5 17.9 216 368-603 628-949 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 5E-36 1.7E-40 323.1 -13.8 192 369-596 118-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 1.5E-31 5.1E-36 305.8 18.6 218 368-605 646-969 (993)
67 1e69_A Chromosome segregation 100.0 2.4E-29 8E-34 261.0 15.3 202 390-593 17-310 (322)
68 3b85_A Phosphate starvation-in 100.0 6.4E-31 2.2E-35 254.4 -4.9 153 385-585 13-172 (208)
69 1z6g_A Guanylate kinase; struc 99.9 7E-31 2.4E-35 257.0 -11.6 166 386-582 11-193 (218)
70 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.8E-31 6.1E-36 276.8 -17.1 206 304-585 75-292 (330)
71 4gp7_A Metallophosphoesterase; 99.9 4.6E-28 1.6E-32 227.8 2.2 149 390-577 1-168 (171)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 3.1E-26 1.1E-30 241.0 16.2 82 506-587 276-364 (365)
73 1ye8_A Protein THEP1, hypothet 99.9 2.1E-28 7.2E-33 231.2 -1.0 147 400-587 2-159 (178)
74 1tq4_A IIGP1, interferon-induc 99.9 1.3E-27 4.5E-32 253.0 -6.9 168 385-578 36-248 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 1.1E-27 3.7E-32 256.8 -8.2 195 368-596 130-344 (438)
76 2vf7_A UVRA2, excinuclease ABC 99.9 5.1E-24 1.7E-28 242.9 13.7 96 503-598 373-477 (842)
77 3aez_A Pantothenate kinase; tr 99.9 3.2E-27 1.1E-31 242.6 -12.2 202 338-584 15-246 (312)
78 3b9q_A Chloroplast SRP recepto 99.9 3.6E-25 1.2E-29 226.3 -1.5 175 389-586 91-285 (302)
79 2f1r_A Molybdopterin-guanine d 99.9 4.2E-26 1.4E-30 213.4 -8.6 111 399-531 3-125 (171)
80 3sop_A Neuronal-specific septi 99.9 1.7E-25 5.9E-30 225.2 -5.2 148 400-572 4-154 (270)
81 2o5v_A DNA replication and rep 99.9 4.1E-23 1.4E-27 215.3 11.9 82 509-595 265-355 (359)
82 2og2_A Putative signal recogni 99.9 3.6E-24 1.2E-28 222.8 -0.9 173 390-585 149-341 (359)
83 2eyu_A Twitching motility prot 99.9 4.6E-26 1.6E-30 228.3 -14.9 183 370-569 6-241 (261)
84 2ewv_A Twitching motility prot 99.9 6.9E-26 2.4E-30 238.7 -16.7 175 386-570 126-353 (372)
85 2i3b_A HCR-ntpase, human cance 99.9 3.7E-24 1.3E-28 203.7 -4.1 159 398-589 1-169 (189)
86 1lvg_A Guanylate kinase, GMP k 99.9 2.3E-25 7.9E-30 214.5 -13.0 169 395-596 1-183 (198)
87 1znw_A Guanylate kinase, GMP k 99.9 1.2E-24 4.3E-29 210.9 -9.0 169 385-581 9-202 (207)
88 2obl_A ESCN; ATPase, hydrolase 99.8 3.3E-23 1.1E-27 215.6 -1.1 194 369-595 45-254 (347)
89 3pih_A Uvrabc system protein A 99.8 4E-22 1.4E-26 229.1 4.6 167 416-598 386-562 (916)
90 1cr0_A DNA primase/helicase; R 99.8 1.8E-21 6.1E-26 199.4 7.3 181 386-585 23-237 (296)
91 2gza_A Type IV secretion syste 99.8 2.1E-25 7.3E-30 234.3 -24.1 223 293-523 52-301 (361)
92 1tf7_A KAIC; homohexamer, hexa 99.8 6.1E-23 2.1E-27 226.7 -5.9 167 385-583 25-210 (525)
93 3asz_A Uridine kinase; cytidin 99.8 1.9E-23 6.3E-28 203.1 -9.5 146 394-568 2-161 (211)
94 4ad8_A DNA repair protein RECN 99.8 2.7E-20 9.3E-25 205.1 14.6 76 508-583 395-473 (517)
95 1lw7_A Transcriptional regulat 99.8 6.8E-23 2.3E-27 216.1 -5.9 148 387-537 157-329 (365)
96 3qkt_A DNA double-strand break 99.8 9.5E-20 3.2E-24 190.0 16.4 79 507-585 246-333 (339)
97 2o8b_B DNA mismatch repair pro 99.8 1.5E-20 5E-25 219.9 10.1 170 368-591 749-937 (1022)
98 2jeo_A Uridine-cytidine kinase 99.8 7.9E-22 2.7E-26 196.3 -1.4 168 384-596 11-187 (245)
99 2r6f_A Excinuclease ABC subuni 99.8 4E-20 1.4E-24 210.9 11.3 153 422-597 432-601 (972)
100 1tf7_A KAIC; homohexamer, hexa 99.8 5.8E-20 2E-24 202.8 8.8 153 392-584 275-444 (525)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.9E-19 1E-23 162.6 11.4 88 498-585 41-142 (148)
102 1ewq_A DNA mismatch repair pro 99.8 2.8E-20 9.5E-25 211.3 5.6 147 367-574 548-704 (765)
103 1w1w_A Structural maintenance 99.8 5.3E-19 1.8E-23 190.5 15.1 73 509-581 333-410 (430)
104 1pzn_A RAD51, DNA repair and r 99.8 6.5E-21 2.2E-25 199.1 -0.3 167 386-595 118-314 (349)
105 3thx_A DNA mismatch repair pro 99.8 7.1E-19 2.4E-23 203.2 15.7 167 368-594 630-811 (934)
106 2ygr_A Uvrabc system protein A 99.8 7.6E-19 2.6E-23 201.2 14.6 135 456-598 465-619 (993)
107 4a74_A DNA repair and recombin 99.8 7.3E-20 2.5E-24 179.7 3.9 148 394-584 21-201 (231)
108 1pui_A ENGB, probable GTP-bind 99.8 1E-20 3.5E-25 183.1 -3.6 169 370-556 4-197 (210)
109 3szr_A Interferon-induced GTP- 99.8 3.9E-21 1.3E-25 214.9 -7.5 190 369-595 10-236 (608)
110 2ehv_A Hypothetical protein PH 99.8 3.1E-20 1.1E-24 184.8 -1.8 180 370-581 7-206 (251)
111 1rj9_A FTSY, signal recognitio 99.7 5.3E-19 1.8E-23 180.6 5.5 149 397-570 101-260 (304)
112 1odf_A YGR205W, hypothetical 3 99.7 7.1E-21 2.4E-25 193.3 -8.7 131 396-544 29-169 (290)
113 2qag_C Septin-7; cell cycle, c 99.7 8.9E-20 3E-24 193.7 -1.1 166 368-571 10-180 (418)
114 3jvv_A Twitching mobility prot 99.7 4.3E-19 1.5E-23 185.1 3.5 147 373-583 92-246 (356)
115 3kta_B Chromosome segregation 99.7 9.4E-18 3.2E-22 156.7 11.0 79 507-585 62-146 (173)
116 2qnr_A Septin-2, protein NEDD5 99.7 9.1E-20 3.1E-24 186.7 -3.9 162 373-569 2-168 (301)
117 3thx_B DNA mismatch repair pro 99.7 3.2E-17 1.1E-21 188.9 9.4 157 369-577 640-805 (918)
118 2w0m_A SSO2452; RECA, SSPF, un 99.7 5.1E-17 1.8E-21 159.4 9.3 165 385-583 9-192 (235)
119 1s96_A Guanylate kinase, GMP k 99.7 3.5E-18 1.2E-22 166.4 -0.3 141 394-596 12-160 (219)
120 2qag_B Septin-6, protein NEDD5 99.7 7.2E-18 2.4E-22 178.2 1.8 180 369-567 16-218 (427)
121 1nij_A Hypothetical protein YJ 99.7 3.5E-19 1.2E-23 183.9 -9.8 154 399-569 5-190 (318)
122 3c8u_A Fructokinase; YP_612366 99.6 3.5E-20 1.2E-24 179.6 -17.5 115 395-537 19-140 (208)
123 1zp6_A Hypothetical protein AT 99.6 3.6E-18 1.2E-22 162.7 -3.4 161 394-577 5-169 (191)
124 1nlf_A Regulatory protein REPA 99.6 2.1E-16 7.2E-21 160.1 9.2 151 394-571 26-184 (279)
125 2cvh_A DNA repair and recombin 99.6 4.9E-16 1.7E-20 151.2 11.0 151 386-583 7-185 (220)
126 1wb9_A DNA mismatch repair pro 99.6 7.8E-17 2.7E-21 184.1 3.9 165 369-588 577-750 (800)
127 1n0w_A DNA repair protein RAD5 99.6 2.2E-15 7.6E-20 148.8 8.4 146 394-583 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.6 4.8E-18 1.6E-22 176.5 -13.0 180 370-556 30-259 (337)
129 3auy_A DNA double-strand break 99.5 3E-14 1E-18 150.2 11.2 77 508-584 279-363 (371)
130 2yhs_A FTSY, cell division pro 99.5 6.3E-16 2.2E-20 165.3 -1.7 153 389-566 284-447 (503)
131 1sxj_E Activator 1 40 kDa subu 99.5 1.6E-14 5.4E-19 151.3 5.8 139 398-570 36-176 (354)
132 2bdt_A BH3686; alpha-beta prot 99.5 3.3E-18 1.1E-22 163.0 -20.6 166 398-595 2-183 (189)
133 2bbw_A Adenylate kinase 4, AK4 99.5 1.1E-15 3.8E-20 151.8 -3.4 167 397-582 26-218 (246)
134 1p9r_A General secretion pathw 99.5 7.2E-17 2.5E-21 171.6 -13.0 129 387-532 158-314 (418)
135 2rcn_A Probable GTPase ENGC; Y 99.5 3.6E-15 1.2E-19 154.5 -0.2 122 387-525 205-329 (358)
136 1htw_A HI0065; nucleotide-bind 99.5 2E-15 6.8E-20 139.0 -2.6 87 373-468 11-97 (158)
137 3e70_C DPA, signal recognition 99.5 5.9E-14 2E-18 144.6 7.7 165 394-586 125-307 (328)
138 2oap_1 GSPE-2, type II secreti 99.4 2E-16 7E-21 172.5 -12.6 174 386-575 248-458 (511)
139 3lda_A DNA repair protein RAD5 99.4 1.1E-13 3.7E-18 146.2 8.7 147 394-584 174-364 (400)
140 2kjq_A DNAA-related protein; s 99.4 2.7E-13 9.1E-18 123.7 6.9 92 387-568 30-125 (149)
141 2yv5_A YJEQ protein; hydrolase 99.3 7.4E-14 2.5E-18 142.8 -0.3 116 393-522 160-300 (302)
142 3ec2_A DNA replication protein 99.3 3.9E-13 1.3E-17 126.6 4.7 110 392-569 32-144 (180)
143 3lnc_A Guanylate kinase, GMP k 99.3 1.7E-15 5.8E-20 149.0 -13.1 146 386-555 15-176 (231)
144 2x8a_A Nuclear valosin-contain 99.3 2.4E-15 8.3E-20 151.7 -12.4 143 386-552 34-190 (274)
145 1cke_A CK, MSSA, protein (cyti 99.3 5.2E-14 1.8E-18 137.6 -6.4 129 397-538 4-151 (227)
146 1udx_A The GTP-binding protein 99.2 1E-12 3.5E-17 139.3 1.9 155 388-567 147-307 (416)
147 1ls1_A Signal recognition part 99.2 1.2E-11 3.9E-16 125.9 6.5 142 370-565 77-219 (295)
148 1u0l_A Probable GTPase ENGC; p 99.2 2.2E-12 7.5E-17 131.8 1.2 104 393-497 164-290 (301)
149 1sq5_A Pantothenate kinase; P- 99.2 3.8E-13 1.3E-17 138.0 -5.8 91 368-468 36-151 (308)
150 1vma_A Cell division protein F 99.2 3.3E-11 1.1E-15 122.8 8.1 98 391-538 97-197 (306)
151 3tr0_A Guanylate kinase, GMP k 99.2 2.8E-11 9.6E-16 116.0 6.6 154 392-554 1-186 (205)
152 4e22_A Cytidylate kinase; P-lo 99.1 2.5E-12 8.4E-17 128.1 -1.5 103 396-506 25-145 (252)
153 3a00_A Guanylate kinase, GMP k 99.1 1.5E-11 5.1E-16 116.5 3.4 128 398-535 1-169 (186)
154 2px0_A Flagellar biosynthesis 99.1 6.3E-11 2.2E-15 120.4 7.2 138 396-587 103-246 (296)
155 3euj_A Chromosome partition pr 99.1 2E-11 7E-16 131.1 3.6 55 386-441 18-72 (483)
156 1t9h_A YLOQ, probable GTPase E 99.1 7.5E-12 2.6E-16 127.3 -0.8 97 393-491 168-288 (307)
157 1in4_A RUVB, holliday junction 99.0 8.8E-14 3E-18 144.5 -17.7 158 370-556 19-193 (334)
158 3ney_A 55 kDa erythrocyte memb 99.0 2.5E-11 8.6E-16 115.2 0.6 84 392-485 13-109 (197)
159 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 7.4E-13 2.5E-17 139.1 -13.9 168 394-591 16-208 (392)
160 2ius_A DNA translocase FTSK; n 99.0 2.1E-11 7.1E-16 131.9 -3.1 164 390-569 159-343 (512)
161 1iy2_A ATP-dependent metallopr 99.0 1.1E-12 3.8E-17 132.5 -12.3 138 371-537 51-195 (278)
162 2dr3_A UPF0273 protein PH0284; 99.0 4.3E-09 1.5E-13 103.6 13.4 167 386-582 10-196 (247)
163 1oix_A RAS-related protein RAB 98.9 9E-11 3.1E-15 111.4 -0.0 142 400-554 31-188 (191)
164 1ixz_A ATP-dependent metallopr 98.9 1.3E-12 4.4E-17 130.2 -13.6 140 370-538 26-172 (254)
165 2zr9_A Protein RECA, recombina 98.9 3.9E-09 1.3E-13 109.7 11.6 143 394-590 57-237 (349)
166 1kgd_A CASK, peripheral plasma 98.9 9.5E-11 3.2E-15 110.3 -0.7 82 396-485 3-95 (180)
167 1qhl_A Protein (cell division 98.9 3.1E-11 1.1E-15 117.4 -4.9 75 369-454 9-91 (227)
168 2dy1_A Elongation factor G; tr 98.9 9.3E-10 3.2E-14 124.2 5.3 76 392-468 3-80 (665)
169 2r6a_A DNAB helicase, replicat 98.9 2.5E-09 8.5E-14 115.6 7.5 177 386-585 191-401 (454)
170 3k1j_A LON protease, ATP-depen 98.9 8.3E-11 2.9E-15 131.7 -4.3 157 385-554 47-227 (604)
171 1svm_A Large T antigen; AAA+ f 98.8 3.4E-11 1.2E-15 126.1 -8.7 138 386-538 157-312 (377)
172 2qt1_A Nicotinamide riboside k 98.8 4.9E-10 1.7E-14 107.7 -0.5 54 391-470 14-67 (207)
173 3tau_A Guanylate kinase, GMP k 98.7 8.8E-10 3E-14 106.2 -0.6 81 396-484 6-97 (208)
174 2f9l_A RAB11B, member RAS onco 98.7 3.4E-09 1.2E-13 101.0 2.9 138 400-555 7-165 (199)
175 2j41_A Guanylate kinase; GMP, 98.6 3.1E-09 1.1E-13 101.7 0.1 84 393-484 1-95 (207)
176 3cr8_A Sulfate adenylyltranfer 98.6 1.8E-09 6.2E-14 118.4 -1.9 89 394-487 365-468 (552)
177 3kta_A Chromosome segregation 98.6 2.6E-09 8.9E-14 100.3 -0.9 99 389-489 18-136 (182)
178 2ce7_A Cell division protein F 98.6 4.7E-08 1.6E-12 105.3 8.5 123 386-580 39-183 (476)
179 3nwj_A ATSK2; P loop, shikimat 98.6 5.3E-09 1.8E-13 103.3 -0.5 52 369-422 17-72 (250)
180 3t34_A Dynamin-related protein 98.6 5.6E-08 1.9E-12 101.7 7.3 46 386-434 25-72 (360)
181 3uie_A Adenylyl-sulfate kinase 98.5 2.1E-09 7E-14 102.8 -4.4 51 386-437 13-65 (200)
182 2qtf_A Protein HFLX, GTP-bindi 98.5 1.6E-08 5.4E-13 105.7 1.5 140 400-556 181-352 (364)
183 4eun_A Thermoresistant glucoki 98.5 1.1E-08 3.7E-13 97.7 0.1 61 392-458 23-84 (200)
184 3vaa_A Shikimate kinase, SK; s 98.5 4.4E-08 1.5E-12 93.4 3.6 45 378-422 5-49 (199)
185 1zu4_A FTSY; GTPase, signal re 98.4 3.5E-08 1.2E-12 101.2 1.4 68 388-455 95-172 (320)
186 2dhr_A FTSH; AAA+ protein, hex 98.4 5.3E-09 1.8E-13 113.4 -5.9 140 371-539 42-188 (499)
187 3hr8_A Protein RECA; alpha and 98.4 2.9E-07 1E-11 95.3 7.4 60 394-456 57-117 (356)
188 3tqc_A Pantothenate kinase; bi 98.4 7.7E-09 2.6E-13 105.7 -4.7 125 386-542 74-211 (321)
189 1jjv_A Dephospho-COA kinase; P 98.4 1.2E-07 4.2E-12 90.7 3.5 126 400-582 4-132 (206)
190 2e87_A Hypothetical protein PH 98.3 7.3E-07 2.5E-11 93.0 8.4 61 508-569 230-293 (357)
191 2xau_A PRE-mRNA-splicing facto 98.3 5.5E-07 1.9E-11 103.2 7.1 65 508-572 189-256 (773)
192 3ice_A Transcription terminati 98.3 1.3E-07 4.4E-12 97.5 1.2 54 367-422 131-198 (422)
193 4a1f_A DNAB helicase, replicat 98.3 1.2E-06 4.2E-11 90.0 8.3 103 387-541 35-141 (338)
194 2z43_A DNA repair and recombin 98.3 6.3E-07 2.2E-11 92.2 5.9 28 394-421 103-130 (324)
195 2vp4_A Deoxynucleoside kinase; 98.3 3.6E-08 1.2E-12 96.3 -3.5 65 391-459 13-87 (230)
196 2ffh_A Protein (FFH); SRP54, s 98.2 2.1E-06 7.2E-11 90.9 8.6 163 370-566 77-246 (425)
197 2eyu_A Twitching motility prot 98.2 5.6E-07 1.9E-11 89.5 2.9 59 517-581 88-146 (261)
198 1knq_A Gluconate kinase; ALFA/ 98.1 7.6E-07 2.6E-11 82.7 1.2 53 396-454 6-59 (175)
199 1rz3_A Hypothetical protein rb 98.1 7.4E-07 2.5E-11 85.0 1.1 48 394-441 18-65 (201)
200 1uf9_A TT1252 protein; P-loop, 98.1 1.8E-07 6.3E-12 88.9 -3.3 33 398-435 8-40 (203)
201 3kl4_A SRP54, signal recogniti 98.1 3E-06 1E-10 89.9 5.6 40 397-436 96-135 (433)
202 1fnn_A CDC6P, cell division co 98.0 1.9E-05 6.5E-10 82.8 11.0 45 526-571 124-172 (389)
203 3b9p_A CG5977-PA, isoform A; A 98.0 2.3E-05 7.8E-10 79.2 10.6 71 511-581 97-187 (297)
204 1v5w_A DMC1, meiotic recombina 97.9 1.7E-05 5.8E-10 82.1 7.5 28 394-421 118-145 (343)
205 2pez_A Bifunctional 3'-phospho 97.9 1.2E-06 4.2E-11 81.6 -1.2 40 396-436 3-44 (179)
206 3bh0_A DNAB-like replicative h 97.8 2.3E-05 8E-10 80.1 7.7 106 386-539 56-163 (315)
207 2z4s_A Chromosomal replication 97.8 2.3E-05 7.7E-10 84.0 7.7 67 525-591 191-263 (440)
208 1ega_A Protein (GTP-binding pr 97.8 8.9E-06 3.1E-10 82.6 3.9 142 397-571 7-162 (301)
209 1sxj_C Activator 1 40 kDa subu 97.8 4.4E-06 1.5E-10 86.4 1.2 42 386-427 32-75 (340)
210 3lxx_A GTPase IMAP family memb 97.8 0.00013 4.6E-09 71.0 11.6 28 400-427 31-58 (239)
211 1ypw_A Transitional endoplasmi 97.8 5.3E-06 1.8E-10 95.5 1.7 32 393-424 233-264 (806)
212 3m6a_A ATP-dependent protease 97.7 5.3E-06 1.8E-10 91.3 0.3 69 386-455 97-165 (543)
213 1mky_A Probable GTP-binding pr 97.7 1.7E-05 5.8E-10 85.0 3.6 200 399-610 181-420 (439)
214 4eaq_A DTMP kinase, thymidylat 97.7 1.1E-05 3.7E-10 78.5 1.9 44 388-432 13-59 (229)
215 1lv7_A FTSH; alpha/beta domain 97.7 0.00015 5.1E-09 71.5 10.2 42 388-433 37-78 (257)
216 1u94_A RECA protein, recombina 97.7 0.00019 6.3E-09 74.4 11.2 36 386-422 49-87 (356)
217 2qor_A Guanylate kinase; phosp 97.7 7.1E-06 2.4E-10 78.2 0.4 53 395-447 9-72 (204)
218 1f6b_A SAR1; gtpases, N-termin 97.7 1E-05 3.5E-10 76.6 1.4 42 376-420 6-47 (198)
219 2qby_A CDC6 homolog 1, cell di 97.6 1.5E-05 5.1E-10 83.3 2.5 31 396-426 43-73 (386)
220 1l8q_A Chromosomal replication 97.6 5.9E-05 2E-09 77.3 7.0 29 397-425 36-64 (324)
221 1kag_A SKI, shikimate kinase I 97.6 2.1E-05 7.3E-10 72.5 3.0 33 397-433 3-35 (173)
222 2p67_A LAO/AO transport system 97.6 6.4E-06 2.2E-10 85.3 -0.8 52 386-437 44-95 (341)
223 1m7g_A Adenylylsulfate kinase; 97.6 6.3E-06 2.1E-10 79.1 -1.0 42 393-434 20-63 (211)
224 3llm_A ATP-dependent RNA helic 97.6 6.5E-05 2.2E-09 73.2 6.1 134 394-564 72-214 (235)
225 3r20_A Cytidylate kinase; stru 97.6 4.7E-06 1.6E-10 81.0 -2.3 71 397-467 8-96 (233)
226 2www_A Methylmalonic aciduria 97.5 2E-05 6.7E-10 81.8 1.3 43 396-438 72-114 (349)
227 4fcw_A Chaperone protein CLPB; 97.5 0.00012 4E-09 74.3 7.0 31 399-429 48-78 (311)
228 1m2o_B GTP-binding protein SAR 97.5 6.3E-05 2.1E-09 70.5 4.0 33 387-420 13-45 (190)
229 2w58_A DNAI, primosome compone 97.5 0.00011 3.8E-09 69.5 5.7 27 399-425 55-81 (202)
230 1j8m_F SRP54, signal recogniti 97.4 0.00035 1.2E-08 70.5 9.5 49 389-438 89-138 (297)
231 2gj8_A MNME, tRNA modification 97.4 7.7E-05 2.6E-09 68.8 3.7 27 396-422 2-28 (172)
232 2jaq_A Deoxyguanosine kinase; 97.4 7.2E-06 2.5E-10 77.7 -3.6 70 400-469 2-87 (205)
233 3h4m_A Proteasome-activating n 97.4 0.00032 1.1E-08 70.1 8.2 28 395-422 48-75 (285)
234 3cf0_A Transitional endoplasmi 97.4 0.00019 6.4E-09 72.7 6.5 31 393-423 44-74 (301)
235 4dcu_A GTP-binding protein ENG 97.3 0.00033 1.1E-08 75.3 8.2 58 512-572 87-145 (456)
236 3bos_A Putative DNA replicatio 97.3 6.4E-05 2.2E-09 72.8 2.4 28 397-424 51-78 (242)
237 1y63_A LMAJ004144AAA protein; 97.3 0.0001 3.4E-09 68.9 3.3 32 390-421 2-33 (184)
238 1sxj_D Activator 1 41 kDa subu 97.3 5.2E-05 1.8E-09 78.3 1.0 43 527-570 133-175 (353)
239 1njg_A DNA polymerase III subu 97.3 5.2E-05 1.8E-09 73.2 0.7 45 526-571 125-169 (250)
240 1ex7_A Guanylate kinase; subst 97.2 0.00011 3.7E-09 68.8 2.2 75 401-485 4-91 (186)
241 4a82_A Cystic fibrosis transme 97.2 0.15 5.1E-06 56.2 27.7 100 36-136 3-102 (578)
242 3n70_A Transport activator; si 97.2 0.0011 3.9E-08 59.0 8.7 30 396-425 22-51 (145)
243 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00022 7.5E-09 64.2 3.8 29 390-419 16-44 (149)
244 2q6t_A DNAB replication FORK h 97.2 0.0014 4.7E-08 70.2 10.5 151 387-564 189-357 (444)
245 2i1q_A DNA repair and recombin 97.1 0.00067 2.3E-08 69.3 7.6 27 394-420 94-120 (322)
246 2yvu_A Probable adenylyl-sulfa 97.1 0.00013 4.4E-09 68.2 1.8 40 394-433 9-49 (186)
247 3t61_A Gluconokinase; PSI-biol 97.1 0.00012 3.9E-09 69.5 1.3 34 398-435 18-51 (202)
248 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00023 7.9E-09 74.4 3.3 41 394-434 18-69 (396)
249 2qag_A Septin-2, protein NEDD5 97.0 5.2E-05 1.8E-09 79.0 -1.8 58 367-433 15-72 (361)
250 2wji_A Ferrous iron transport 97.0 0.00047 1.6E-08 62.7 4.9 25 399-423 4-28 (165)
251 2p5t_B PEZT; postsegregational 97.0 0.00013 4.5E-09 71.9 0.9 41 394-436 28-68 (253)
252 3uk6_A RUVB-like 2; hexameric 97.0 0.0015 5E-08 67.8 8.9 38 396-433 68-105 (368)
253 1lw7_A Transcriptional regulat 97.0 1.2E-05 4.1E-10 84.0 -7.1 87 509-597 258-356 (365)
254 1np6_A Molybdopterin-guanine d 97.0 0.00025 8.6E-09 65.6 2.4 38 398-435 6-46 (174)
255 2wjg_A FEOB, ferrous iron tran 97.0 0.00038 1.3E-08 64.5 3.4 22 400-421 9-30 (188)
256 3b60_A Lipid A export ATP-bind 96.9 0.67 2.3E-05 51.0 32.9 91 38-136 16-106 (582)
257 3qf4_A ABC transporter, ATP-bi 96.9 0.77 2.6E-05 50.5 34.1 90 38-135 14-103 (587)
258 3lxw_A GTPase IMAP family memb 96.9 0.0011 3.9E-08 64.8 6.1 59 511-570 86-151 (247)
259 2zej_A Dardarin, leucine-rich 96.9 0.0005 1.7E-08 63.8 3.3 26 400-425 4-29 (184)
260 2if2_A Dephospho-COA kinase; a 96.9 0.00051 1.7E-08 65.0 3.4 21 400-420 3-23 (204)
261 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0047 1.6E-07 60.5 10.5 27 396-422 37-63 (262)
262 3dm5_A SRP54, signal recogniti 96.8 0.005 1.7E-07 65.2 10.6 35 397-431 99-133 (443)
263 1xp8_A RECA protein, recombina 96.8 0.0032 1.1E-07 65.3 8.8 28 394-421 70-97 (366)
264 2v1u_A Cell division control p 96.7 0.0015 5.1E-08 67.9 6.3 28 396-423 42-69 (387)
265 3d8b_A Fidgetin-like protein 1 96.7 0.0045 1.5E-07 64.1 9.7 27 396-422 115-141 (357)
266 1qhx_A CPT, protein (chloramph 96.7 0.00084 2.9E-08 61.8 3.7 27 397-423 2-28 (178)
267 3bgw_A DNAB-like replicative h 96.7 0.0018 6.3E-08 69.1 6.8 34 388-421 187-220 (444)
268 3syl_A Protein CBBX; photosynt 96.7 0.0087 3E-07 60.2 11.6 26 397-422 66-91 (309)
269 2b8t_A Thymidine kinase; deoxy 96.7 0.0013 4.3E-08 63.4 4.9 51 527-581 89-150 (223)
270 3cm0_A Adenylate kinase; ATP-b 96.7 0.00063 2.1E-08 63.2 2.7 27 396-422 2-28 (186)
271 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00062 2.1E-08 71.6 2.9 57 527-583 262-335 (392)
272 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0021 7.1E-08 65.0 6.4 28 393-420 118-145 (331)
273 3ihw_A Centg3; RAS, centaurin, 96.7 0.0014 4.9E-08 60.7 5.0 36 400-435 22-66 (184)
274 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00031 1.1E-08 72.0 0.2 37 386-422 10-48 (359)
275 2dby_A GTP-binding protein; GD 96.6 0.0005 1.7E-08 71.4 1.4 59 400-490 3-61 (368)
276 2ewv_A Twitching motility prot 96.6 0.00073 2.5E-08 70.5 2.6 57 517-579 199-255 (372)
277 1ko7_A HPR kinase/phosphatase; 96.6 0.00071 2.4E-08 68.3 2.2 34 386-420 133-166 (314)
278 3qks_A DNA double-strand break 96.6 0.0012 4.3E-08 62.5 3.8 29 390-419 16-44 (203)
279 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.6E-08 60.6 3.2 24 399-422 2-25 (173)
280 2chg_A Replication factor C sm 96.6 0.0037 1.3E-07 59.1 7.1 43 526-569 101-143 (226)
281 2orw_A Thymidine kinase; TMTK, 96.5 0.0023 7.8E-08 59.7 5.4 51 527-582 76-138 (184)
282 1kht_A Adenylate kinase; phosp 96.5 0.0013 4.3E-08 61.2 3.6 27 397-423 2-28 (192)
283 2v54_A DTMP kinase, thymidylat 96.5 0.0014 4.7E-08 61.8 3.8 27 396-422 2-28 (204)
284 1gtv_A TMK, thymidylate kinase 96.5 0.00033 1.1E-08 66.7 -0.7 26 400-425 2-27 (214)
285 3qf4_B Uncharacterized ABC tra 96.5 0.85 2.9E-05 50.3 26.7 96 32-135 22-117 (598)
286 3trf_A Shikimate kinase, SK; a 96.5 0.0014 4.8E-08 60.7 3.6 26 397-422 4-29 (185)
287 1gvn_B Zeta; postsegregational 96.5 0.0013 4.3E-08 66.1 3.4 35 397-433 32-66 (287)
288 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.014 5E-07 59.3 11.4 28 395-422 42-69 (322)
289 1jal_A YCHF protein; nucleotid 96.5 0.0022 7.4E-08 66.3 5.0 36 398-433 2-48 (363)
290 3cmw_A Protein RECA, recombina 96.4 0.011 3.8E-07 72.2 11.8 35 395-429 729-763 (1706)
291 1q3t_A Cytidylate kinase; nucl 96.4 0.0015 5.1E-08 63.4 3.5 29 394-422 12-40 (236)
292 1fzq_A ADP-ribosylation factor 96.4 0.0014 4.7E-08 60.6 3.0 23 399-421 17-39 (181)
293 3t15_A Ribulose bisphosphate c 96.4 0.0043 1.5E-07 62.4 6.8 26 397-422 35-60 (293)
294 2rhm_A Putative kinase; P-loop 96.4 0.0013 4.5E-08 61.3 2.6 27 396-422 3-29 (193)
295 1vht_A Dephospho-COA kinase; s 96.4 0.0018 6E-08 61.9 3.6 32 397-433 3-34 (218)
296 3iij_A Coilin-interacting nucl 96.4 0.0011 3.8E-08 61.2 2.1 27 396-422 9-35 (180)
297 3b5x_A Lipid A export ATP-bind 96.3 1.7 5.7E-05 47.8 40.2 94 34-136 12-106 (582)
298 3lw7_A Adenylate kinase relate 96.3 0.0018 6.1E-08 59.0 3.2 20 399-418 2-21 (179)
299 2wwf_A Thymidilate kinase, put 96.3 0.002 6.9E-08 61.0 3.4 27 396-422 8-34 (212)
300 2c95_A Adenylate kinase 1; tra 96.3 0.0019 6.5E-08 60.3 3.2 27 396-422 7-33 (196)
301 3zvl_A Bifunctional polynucleo 96.3 0.014 4.8E-07 61.7 10.2 37 393-433 253-289 (416)
302 2qp9_X Vacuolar protein sortin 96.2 0.013 4.4E-07 60.6 9.4 27 396-422 82-108 (355)
303 1nn5_A Similar to deoxythymidy 96.2 0.0022 7.7E-08 60.8 3.4 28 395-422 6-33 (215)
304 2plr_A DTMP kinase, probable t 96.2 0.0023 7.9E-08 60.5 3.2 28 397-424 3-30 (213)
305 2vli_A Antibiotic resistance p 96.2 0.0019 6.6E-08 59.6 2.5 27 396-422 3-29 (183)
306 1via_A Shikimate kinase; struc 96.1 0.0023 7.8E-08 58.8 2.9 23 400-422 6-28 (175)
307 3io5_A Recombination and repai 96.1 0.0077 2.6E-07 60.6 6.8 23 395-418 26-48 (333)
308 2r62_A Cell division protease 96.1 0.0019 6.3E-08 63.9 2.1 32 389-422 37-68 (268)
309 4b4t_L 26S protease subunit RP 96.1 0.013 4.3E-07 62.1 8.6 30 394-423 211-240 (437)
310 2bwj_A Adenylate kinase 5; pho 96.1 0.0023 7.9E-08 59.9 2.6 29 394-422 8-36 (199)
311 1ly1_A Polynucleotide kinase; 96.1 0.003 1E-07 58.0 3.3 22 399-420 3-24 (181)
312 2qby_B CDC6 homolog 3, cell di 96.1 0.0033 1.1E-07 65.4 4.0 26 397-422 44-69 (384)
313 3co5_A Putative two-component 96.0 0.0095 3.2E-07 52.8 6.3 28 396-423 25-52 (143)
314 2ze6_A Isopentenyl transferase 96.0 0.0029 9.8E-08 62.2 3.2 23 400-422 3-25 (253)
315 3pfi_A Holliday junction ATP-d 96.0 0.028 9.7E-07 57.3 10.8 24 399-422 56-79 (338)
316 2lkc_A Translation initiation 96.0 0.0082 2.8E-07 54.6 6.0 26 396-421 6-31 (178)
317 1tev_A UMP-CMP kinase; ploop, 96.0 0.0031 1.1E-07 58.7 3.1 26 397-422 2-27 (196)
318 1aky_A Adenylate kinase; ATP:A 96.0 0.0038 1.3E-07 59.7 3.7 27 396-422 2-28 (220)
319 1xjc_A MOBB protein homolog; s 95.9 0.0025 8.5E-08 58.4 2.0 35 399-433 5-42 (169)
320 1hqc_A RUVB; extended AAA-ATPa 95.9 0.021 7.1E-07 57.8 9.2 26 397-422 37-62 (324)
321 1nks_A Adenylate kinase; therm 95.9 0.0035 1.2E-07 58.1 3.0 24 400-423 3-26 (194)
322 2erx_A GTP-binding protein DI- 95.9 0.007 2.4E-07 54.5 4.9 22 400-421 5-26 (172)
323 2cdn_A Adenylate kinase; phosp 95.9 0.0046 1.6E-07 58.1 3.7 26 397-422 19-44 (201)
324 3cbq_A GTP-binding protein REM 95.9 0.0033 1.1E-07 58.9 2.5 22 400-421 25-46 (195)
325 2zan_A Vacuolar protein sortin 95.8 0.033 1.1E-06 59.3 10.7 28 395-422 164-191 (444)
326 1zd8_A GTP:AMP phosphotransfer 95.8 0.0043 1.5E-07 59.7 3.3 27 396-422 5-31 (227)
327 1jr3_A DNA polymerase III subu 95.8 0.0015 5.3E-08 67.6 -0.0 42 527-569 119-160 (373)
328 3cmu_A Protein RECA, recombina 95.8 0.019 6.5E-07 71.1 9.4 37 385-421 1066-1104(2050)
329 3cmu_A Protein RECA, recombina 95.8 0.04 1.4E-06 68.2 12.2 30 395-424 380-409 (2050)
330 2z0h_A DTMP kinase, thymidylat 95.8 0.0046 1.6E-07 57.7 3.3 24 400-423 2-25 (197)
331 3fb4_A Adenylate kinase; psych 95.8 0.0047 1.6E-07 58.7 3.3 23 400-422 2-24 (216)
332 1zak_A Adenylate kinase; ATP:A 95.7 0.0042 1.4E-07 59.5 2.9 26 397-422 4-29 (222)
333 1zuh_A Shikimate kinase; alpha 95.7 0.0054 1.9E-07 55.8 3.5 25 398-422 7-31 (168)
334 3u61_B DNA polymerase accessor 95.7 0.042 1.4E-06 55.6 10.6 43 527-570 105-148 (324)
335 2iyv_A Shikimate kinase, SK; t 95.7 0.0048 1.6E-07 57.1 3.0 25 398-422 2-26 (184)
336 1z2a_A RAS-related protein RAB 95.7 0.0051 1.8E-07 55.3 3.1 22 400-421 7-28 (168)
337 1e6c_A Shikimate kinase; phosp 95.7 0.0051 1.7E-07 56.1 3.0 24 399-422 3-26 (173)
338 3pxi_A Negative regulator of g 95.7 0.017 5.7E-07 66.1 7.9 23 400-422 523-545 (758)
339 1z0j_A RAB-22, RAS-related pro 95.7 0.008 2.7E-07 54.1 4.3 23 400-422 8-30 (170)
340 2pt5_A Shikimate kinase, SK; a 95.7 0.0058 2E-07 55.4 3.3 23 400-422 2-24 (168)
341 3ake_A Cytidylate kinase; CMP 95.6 0.0053 1.8E-07 57.8 3.1 23 400-422 4-26 (208)
342 3dl0_A Adenylate kinase; phosp 95.6 0.0055 1.9E-07 58.3 3.3 23 400-422 2-24 (216)
343 3q72_A GTP-binding protein RAD 95.6 0.0047 1.6E-07 55.5 2.6 23 400-422 4-26 (166)
344 2ew1_A RAS-related protein RAB 95.6 0.01 3.5E-07 55.9 5.0 22 400-421 28-49 (201)
345 1a7j_A Phosphoribulokinase; tr 95.6 0.0031 1.1E-07 63.3 1.4 26 397-422 4-29 (290)
346 2nzj_A GTP-binding protein REM 95.6 0.0062 2.1E-07 55.2 3.4 23 400-422 6-28 (175)
347 2grj_A Dephospho-COA kinase; T 95.6 0.0059 2E-07 57.3 3.3 24 399-422 13-36 (192)
348 1ukz_A Uridylate kinase; trans 95.6 0.0053 1.8E-07 57.8 2.9 26 397-422 14-39 (203)
349 3q85_A GTP-binding protein REM 95.6 0.0062 2.1E-07 54.9 3.3 23 400-422 4-26 (169)
350 1kao_A RAP2A; GTP-binding prot 95.6 0.0061 2.1E-07 54.6 3.2 22 400-421 5-26 (167)
351 2pbr_A DTMP kinase, thymidylat 95.6 0.0063 2.1E-07 56.5 3.3 23 400-422 2-24 (195)
352 2ged_A SR-beta, signal recogni 95.6 0.0061 2.1E-07 56.5 3.2 26 397-422 47-72 (193)
353 2dyk_A GTP-binding protein; GT 95.6 0.0064 2.2E-07 54.3 3.2 23 400-422 3-25 (161)
354 4b4t_K 26S protease regulatory 95.5 0.023 7.9E-07 59.9 7.9 29 394-422 202-230 (428)
355 4b4t_M 26S protease regulatory 95.5 0.027 9.3E-07 59.5 8.4 29 394-422 211-239 (434)
356 1ksh_A ARF-like protein 2; sma 95.5 0.013 4.4E-07 53.9 5.3 26 396-421 16-41 (186)
357 3iby_A Ferrous iron transport 95.5 0.0061 2.1E-07 60.0 3.2 23 400-422 3-25 (256)
358 3k53_A Ferrous iron transport 95.5 0.0058 2E-07 60.6 3.0 24 400-423 5-28 (271)
359 1u8z_A RAS-related protein RAL 95.5 0.0065 2.2E-07 54.4 3.1 22 400-421 6-27 (168)
360 3tlx_A Adenylate kinase 2; str 95.5 0.0062 2.1E-07 59.4 3.1 26 397-422 28-53 (243)
361 2ce2_X GTPase HRAS; signaling 95.5 0.006 2.1E-07 54.5 2.8 22 400-421 5-26 (166)
362 2oil_A CATX-8, RAS-related pro 95.5 0.0095 3.2E-07 55.2 4.3 22 400-421 27-48 (193)
363 2r8r_A Sensor protein; KDPD, P 95.5 0.0076 2.6E-07 57.7 3.6 26 396-421 3-29 (228)
364 1c1y_A RAS-related protein RAP 95.5 0.0067 2.3E-07 54.4 3.1 22 400-421 5-26 (167)
365 1qf9_A UMP/CMP kinase, protein 95.5 0.0051 1.7E-07 57.1 2.3 25 398-422 6-30 (194)
366 1z08_A RAS-related protein RAB 95.5 0.0069 2.4E-07 54.6 3.2 22 400-421 8-29 (170)
367 3clv_A RAB5 protein, putative; 95.5 0.0091 3.1E-07 55.4 4.0 22 400-421 9-30 (208)
368 3a8t_A Adenylate isopentenyltr 95.5 0.0075 2.6E-07 61.4 3.6 28 396-423 38-65 (339)
369 1uj2_A Uridine-cytidine kinase 95.4 0.007 2.4E-07 59.3 3.3 24 399-422 23-46 (252)
370 1g16_A RAS-related protein SEC 95.4 0.0065 2.2E-07 54.7 2.8 22 400-421 5-26 (170)
371 1ek0_A Protein (GTP-binding pr 95.4 0.0072 2.4E-07 54.3 3.1 23 400-422 5-27 (170)
372 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0073 2.5E-07 54.9 3.2 22 400-421 9-30 (177)
373 1ky3_A GTP-binding protein YPT 95.4 0.0073 2.5E-07 55.0 3.2 23 400-422 10-32 (182)
374 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0071 2.4E-07 59.6 3.2 27 396-422 2-28 (260)
375 3t5d_A Septin-7; GTP-binding p 95.4 0.0061 2.1E-07 60.5 2.7 23 400-422 10-32 (274)
376 3eie_A Vacuolar protein sortin 95.4 0.015 5.1E-07 59.1 5.7 27 396-422 49-75 (322)
377 3tw8_B RAS-related protein RAB 95.4 0.0071 2.4E-07 55.1 3.0 22 400-421 11-32 (181)
378 2qmh_A HPR kinase/phosphorylas 95.4 0.01 3.5E-07 55.5 4.0 36 386-422 23-58 (205)
379 2fn4_A P23, RAS-related protei 95.4 0.007 2.4E-07 55.1 2.9 22 400-421 11-32 (181)
380 3be4_A Adenylate kinase; malar 95.4 0.0078 2.7E-07 57.4 3.2 26 397-422 4-29 (217)
381 1svi_A GTP-binding protein YSX 95.4 0.007 2.4E-07 56.1 2.8 25 397-421 22-46 (195)
382 3auy_A DNA double-strand break 95.3 0.0084 2.9E-07 62.4 3.7 30 389-419 17-46 (371)
383 3t1o_A Gliding protein MGLA; G 95.3 0.0086 2.9E-07 55.4 3.3 25 400-424 16-40 (198)
384 1r2q_A RAS-related protein RAB 95.3 0.0083 2.8E-07 53.9 3.1 22 400-421 8-29 (170)
385 2bcg_Y Protein YP2, GTP-bindin 95.3 0.015 5.1E-07 54.5 5.0 22 400-421 10-31 (206)
386 3b1v_A Ferrous iron uptake tra 95.3 0.0086 3E-07 59.4 3.4 23 400-422 5-27 (272)
387 1wf3_A GTP-binding protein; GT 95.3 0.0084 2.9E-07 60.5 3.3 22 400-421 9-30 (301)
388 4dsu_A GTPase KRAS, isoform 2B 95.3 0.0087 3E-07 55.0 3.2 22 400-421 6-27 (189)
389 3pqc_A Probable GTP-binding pr 95.3 0.0077 2.6E-07 55.6 2.8 24 399-422 24-47 (195)
390 1m7b_A RND3/RHOE small GTP-bin 95.3 0.012 4.2E-07 54.1 4.1 22 400-421 9-30 (184)
391 1r8s_A ADP-ribosylation factor 95.3 0.009 3.1E-07 53.5 3.1 21 400-420 2-22 (164)
392 2hxs_A RAB-26, RAS-related pro 95.2 0.0099 3.4E-07 54.0 3.4 22 400-421 8-29 (178)
393 3hu3_A Transitional endoplasmi 95.2 0.042 1.4E-06 59.2 8.8 28 395-422 235-262 (489)
394 2f6r_A COA synthase, bifunctio 95.2 0.0076 2.6E-07 60.2 2.7 23 398-420 75-97 (281)
395 2cxx_A Probable GTP-binding pr 95.2 0.0083 2.8E-07 55.2 2.8 23 400-422 3-25 (190)
396 3bc1_A RAS-related protein RAB 95.2 0.0092 3.1E-07 55.0 3.1 22 400-421 13-34 (195)
397 1upt_A ARL1, ADP-ribosylation 95.2 0.0096 3.3E-07 53.7 3.1 23 398-420 7-29 (171)
398 4b4t_J 26S protease regulatory 95.2 0.041 1.4E-06 57.4 8.1 30 394-423 178-207 (405)
399 2g6b_A RAS-related protein RAB 95.2 0.0099 3.4E-07 54.2 3.1 23 400-422 12-34 (180)
400 3t5g_A GTP-binding protein RHE 95.1 0.016 5.5E-07 52.9 4.6 21 400-420 8-28 (181)
401 2y8e_A RAB-protein 6, GH09086P 95.1 0.0091 3.1E-07 54.2 2.8 22 400-421 16-37 (179)
402 3iev_A GTP-binding protein ERA 95.1 0.0098 3.4E-07 60.2 3.3 23 399-421 11-33 (308)
403 2yl4_A ATP-binding cassette SU 95.1 4.9 0.00017 44.1 38.3 143 101-248 76-222 (595)
404 3con_A GTPase NRAS; structural 95.1 0.01 3.5E-07 54.7 3.1 22 400-421 23-44 (190)
405 1z0f_A RAB14, member RAS oncog 95.1 0.011 3.6E-07 53.8 3.1 22 400-421 17-38 (179)
406 3v9p_A DTMP kinase, thymidylat 95.1 0.0099 3.4E-07 57.3 3.0 29 395-423 22-50 (227)
407 3vfd_A Spastin; ATPase, microt 95.1 0.07 2.4E-06 55.7 9.8 27 396-422 146-172 (389)
408 4b4t_I 26S protease regulatory 95.1 0.054 1.9E-06 56.8 8.7 30 394-423 212-241 (437)
409 2efe_B Small GTP-binding prote 95.1 0.011 3.8E-07 53.9 3.2 23 400-422 14-36 (181)
410 3cmw_A Protein RECA, recombina 95.0 0.077 2.6E-06 64.9 11.2 35 387-422 370-407 (1706)
411 2xtp_A GTPase IMAP family memb 95.0 0.011 3.6E-07 58.1 3.1 24 399-422 23-46 (260)
412 2a9k_A RAS-related protein RAL 95.0 0.011 3.9E-07 54.0 3.1 22 400-421 20-41 (187)
413 3tmk_A Thymidylate kinase; pho 95.0 0.011 3.8E-07 56.5 3.0 29 396-424 3-31 (216)
414 4bas_A ADP-ribosylation factor 95.0 0.015 5.1E-07 54.0 4.0 23 399-421 18-40 (199)
415 3exa_A TRNA delta(2)-isopenten 95.0 0.012 4.2E-07 59.1 3.4 25 398-422 3-27 (322)
416 1ak2_A Adenylate kinase isoenz 95.0 0.014 4.7E-07 56.4 3.7 27 396-422 14-40 (233)
417 4b4t_H 26S protease regulatory 95.0 0.048 1.6E-06 57.7 8.1 29 394-422 239-267 (467)
418 3d3q_A TRNA delta(2)-isopenten 95.0 0.01 3.4E-07 60.6 2.8 25 399-423 8-32 (340)
419 2xb4_A Adenylate kinase; ATP-b 95.0 0.012 4.3E-07 56.3 3.3 23 400-422 2-24 (223)
420 3kkq_A RAS-related protein M-R 94.9 0.012 4.2E-07 53.8 3.1 22 400-421 20-41 (183)
421 1e4v_A Adenylate kinase; trans 94.9 0.011 3.9E-07 56.1 3.0 23 400-422 2-24 (214)
422 2gf9_A RAS-related protein RAB 94.9 0.012 4.2E-07 54.3 3.1 22 400-421 24-45 (189)
423 2cjw_A GTP-binding protein GEM 94.9 0.012 4.2E-07 54.8 3.1 22 400-421 8-29 (192)
424 1vg8_A RAS-related protein RAB 94.9 0.012 4.2E-07 55.0 3.2 23 400-422 10-32 (207)
425 1sky_E F1-ATPase, F1-ATP synth 94.9 0.006 2.1E-07 64.8 1.0 42 387-429 141-182 (473)
426 2bme_A RAB4A, RAS-related prot 94.9 0.011 3.9E-07 54.1 2.8 22 400-421 12-33 (186)
427 1q57_A DNA primase/helicase; d 94.9 0.025 8.7E-07 61.3 6.0 35 388-422 232-266 (503)
428 2h92_A Cytidylate kinase; ross 94.9 0.01 3.6E-07 56.4 2.6 25 398-422 3-27 (219)
429 3tqf_A HPR(Ser) kinase; transf 94.9 0.017 5.9E-07 52.7 3.8 34 386-420 5-38 (181)
430 4edh_A DTMP kinase, thymidylat 94.9 0.013 4.4E-07 55.9 3.2 29 396-424 4-32 (213)
431 2bov_A RAla, RAS-related prote 94.9 0.013 4.4E-07 54.8 3.1 22 400-421 16-37 (206)
432 1z06_A RAS-related protein RAB 94.9 0.013 4.5E-07 54.1 3.2 22 400-421 22-43 (189)
433 2fg5_A RAB-22B, RAS-related pr 94.9 0.012 4.1E-07 54.6 2.9 22 400-421 25-46 (192)
434 1moz_A ARL1, ADP-ribosylation 94.9 0.0082 2.8E-07 55.0 1.6 24 397-420 17-40 (183)
435 3lv8_A DTMP kinase, thymidylat 94.8 0.014 4.9E-07 56.5 3.4 29 396-424 25-53 (236)
436 1a5t_A Delta prime, HOLB; zinc 94.8 0.053 1.8E-06 55.4 7.8 42 527-569 108-149 (334)
437 1gwn_A RHO-related GTP-binding 94.8 0.018 6.3E-07 54.2 4.1 22 400-421 30-51 (205)
438 1zbd_A Rabphilin-3A; G protein 94.8 0.014 4.9E-07 54.5 3.3 22 400-421 10-31 (203)
439 2gf0_A GTP-binding protein DI- 94.8 0.013 4.3E-07 54.5 2.9 21 400-420 10-30 (199)
440 4dhe_A Probable GTP-binding pr 94.8 0.0076 2.6E-07 57.3 1.4 25 398-422 29-53 (223)
441 3oes_A GTPase rhebl1; small GT 94.8 0.012 4.2E-07 55.0 2.8 26 397-422 23-48 (201)
442 4tmk_A Protein (thymidylate ki 94.8 0.015 5.2E-07 55.4 3.4 28 397-424 2-29 (213)
443 3bwd_D RAC-like GTP-binding pr 94.8 0.016 5.5E-07 52.8 3.5 25 397-421 7-31 (182)
444 1nrj_B SR-beta, signal recogni 94.8 0.014 4.7E-07 55.3 3.1 24 399-422 13-36 (218)
445 2il1_A RAB12; G-protein, GDP, 94.8 0.013 4.5E-07 54.4 2.9 22 400-421 28-49 (192)
446 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.014 4.9E-07 53.3 3.1 22 400-421 7-28 (186)
447 3tkl_A RAS-related protein RAB 94.8 0.018 6.2E-07 53.2 3.8 23 400-422 18-40 (196)
448 1ypw_A Transitional endoplasmi 94.8 0.0015 5.1E-08 75.2 -4.5 46 390-437 503-548 (806)
449 2qu8_A Putative nucleolar GTP- 94.8 0.014 4.8E-07 55.9 3.1 23 399-421 30-52 (228)
450 3dz8_A RAS-related protein RAB 94.7 0.013 4.6E-07 54.2 2.8 23 400-422 25-47 (191)
451 2a5j_A RAS-related protein RAB 94.7 0.015 5.1E-07 53.9 3.1 22 400-421 23-44 (191)
452 3cnl_A YLQF, putative uncharac 94.7 0.015 5.3E-07 57.3 3.4 30 399-428 100-129 (262)
453 3i8s_A Ferrous iron transport 94.7 0.014 4.8E-07 57.9 3.1 23 400-422 5-27 (274)
454 1sxj_B Activator 1 37 kDa subu 94.7 0.031 1.1E-06 56.2 5.7 42 527-569 107-148 (323)
455 3llu_A RAS-related GTP-binding 94.7 0.016 5.4E-07 54.0 3.2 26 399-424 21-46 (196)
456 3ld9_A DTMP kinase, thymidylat 94.7 0.016 5.3E-07 55.7 3.1 28 396-423 19-46 (223)
457 2o52_A RAS-related protein RAB 94.7 0.015 5.2E-07 54.4 3.0 22 400-421 27-48 (200)
458 1jbk_A CLPB protein; beta barr 94.7 0.018 6.1E-07 52.7 3.5 28 396-423 41-68 (195)
459 3euj_A Chromosome partition pr 94.6 0.061 2.1E-06 57.5 8.0 77 501-581 371-464 (483)
460 3reg_A RHO-like small GTPase; 94.6 0.016 5.5E-07 53.7 3.1 22 400-421 25-46 (194)
461 1zd9_A ADP-ribosylation factor 94.6 0.016 5.6E-07 53.5 3.1 23 399-421 23-45 (188)
462 1zj6_A ADP-ribosylation factor 94.6 0.016 5.4E-07 53.4 3.0 23 398-420 16-38 (187)
463 2atv_A RERG, RAS-like estrogen 94.6 0.017 5.7E-07 53.8 3.2 23 399-421 29-51 (196)
464 2fv8_A H6, RHO-related GTP-bin 94.6 0.015 5.1E-07 54.7 2.9 33 389-421 16-48 (207)
465 3a1s_A Iron(II) transport prot 94.6 0.017 5.9E-07 56.8 3.4 23 400-422 7-29 (258)
466 2p5s_A RAS and EF-hand domain 94.6 0.017 5.7E-07 53.9 3.1 25 397-421 27-51 (199)
467 2h17_A ADP-ribosylation factor 94.6 0.014 4.8E-07 53.5 2.5 23 399-421 22-44 (181)
468 1jwy_B Dynamin A GTPase domain 94.6 0.015 5.2E-07 58.6 3.0 23 400-422 26-48 (315)
469 3cph_A RAS-related protein SEC 94.6 0.017 5.8E-07 54.3 3.1 24 398-421 20-43 (213)
470 1x3s_A RAS-related protein RAB 94.6 0.017 5.9E-07 53.3 3.1 23 399-421 16-38 (195)
471 1p5z_B DCK, deoxycytidine kina 94.6 0.01 3.4E-07 58.5 1.5 29 395-423 21-49 (263)
472 2wsm_A Hydrogenase expression/ 94.5 0.016 5.4E-07 55.1 2.9 24 399-422 31-54 (221)
473 3c5c_A RAS-like protein 12; GD 94.5 0.018 6.1E-07 53.2 3.2 22 400-421 23-44 (187)
474 2h57_A ADP-ribosylation factor 94.5 0.013 4.5E-07 54.2 2.2 24 399-422 22-45 (190)
475 3def_A T7I23.11 protein; chlor 94.5 0.017 5.7E-07 56.9 3.1 23 400-422 38-60 (262)
476 2iwr_A Centaurin gamma 1; ANK 94.5 0.014 4.7E-07 53.2 2.3 22 400-421 9-30 (178)
477 2ocp_A DGK, deoxyguanosine kin 94.5 0.016 5.6E-07 56.1 2.9 27 397-423 1-27 (241)
478 3umf_A Adenylate kinase; rossm 94.5 0.015 5E-07 55.6 2.5 29 394-422 25-53 (217)
479 2f7s_A C25KG, RAS-related prot 94.5 0.02 6.7E-07 54.2 3.4 23 400-422 27-49 (217)
480 3crm_A TRNA delta(2)-isopenten 94.5 0.016 5.5E-07 58.7 2.8 25 399-423 6-30 (323)
481 1h65_A Chloroplast outer envel 94.5 0.017 5.8E-07 57.1 3.0 23 400-422 41-63 (270)
482 2j1l_A RHO-related GTP-binding 94.5 0.018 6.2E-07 54.5 3.1 22 400-421 36-57 (214)
483 2q3h_A RAS homolog gene family 94.5 0.02 6.8E-07 53.4 3.3 25 397-421 19-43 (201)
484 2aka_B Dynamin-1; fusion prote 94.5 0.016 5.5E-07 57.9 2.8 24 399-422 27-50 (299)
485 2g3y_A GTP-binding protein GEM 94.4 0.021 7.3E-07 54.2 3.4 23 400-422 39-61 (211)
486 2fu5_C RAS-related protein RAB 94.4 0.013 4.6E-07 53.5 1.9 22 400-421 10-31 (183)
487 1ltq_A Polynucleotide kinase; 94.4 0.02 6.8E-07 57.4 3.3 31 399-432 3-33 (301)
488 2fh5_B SR-beta, signal recogni 94.4 0.026 8.8E-07 53.2 3.9 24 399-422 8-31 (214)
489 2gco_A H9, RHO-related GTP-bin 94.4 0.018 6.3E-07 53.8 2.8 22 400-421 27-48 (201)
490 2b6h_A ADP-ribosylation factor 94.3 0.019 6.4E-07 53.4 2.6 25 396-420 27-51 (192)
491 3foz_A TRNA delta(2)-isopenten 94.2 0.023 7.7E-07 57.1 3.2 26 398-423 10-35 (316)
492 3r7w_A Gtpase1, GTP-binding pr 94.2 0.021 7.2E-07 57.7 3.0 26 397-422 2-27 (307)
493 1qvr_A CLPB protein; coiled co 94.2 0.035 1.2E-06 64.3 5.2 35 399-433 589-624 (854)
494 2atx_A Small GTP binding prote 94.1 0.023 7.7E-07 52.6 2.9 22 400-421 20-41 (194)
495 2orv_A Thymidine kinase; TP4A 94.1 0.099 3.4E-06 50.1 7.2 51 526-581 89-150 (234)
496 2hf9_A Probable hydrogenase ni 94.0 0.023 8E-07 54.1 2.8 24 399-422 39-62 (226)
497 2p65_A Hypothetical protein PF 94.0 0.022 7.7E-07 52.0 2.6 29 396-424 41-69 (187)
498 4djt_A GTP-binding nuclear pro 94.0 0.012 4.3E-07 55.6 0.8 22 400-421 13-34 (218)
499 4gzl_A RAS-related C3 botulinu 93.9 0.025 8.7E-07 53.0 2.8 24 397-420 29-52 (204)
500 2hup_A RAS-related protein RAB 93.9 0.026 9.1E-07 52.8 2.9 22 400-421 31-52 (201)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-104 Score=956.97 Aligned_cols=582 Identities=34% Similarity=0.542 Sum_probs=524.9
Q ss_pred cchhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------CCchhHHHHHHHHHH
Q 007152 27 ANVGFGRVLALAKPD-AGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDT-------------ETPEQKAEALAAVRS 92 (616)
Q Consensus 27 ~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~-------------~~~~~~~~~~~~~~~ 92 (616)
..+.++++|+|..++ +..++++++++++.++..++.+++++.++|.+.... ............+..
T Consensus 58 ~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1321)
T 4f4c_A 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMN 137 (1321)
T ss_dssp SCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHH
T ss_pred CCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence 456788999987664 455566666666666666777788888888642100 000001111223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHH
Q 007152 93 TILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEA 172 (616)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~ 172 (616)
+++.+++++++..++.+++.++....++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHH
Q 007152 173 LRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE 252 (616)
Q Consensus 173 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 252 (616)
+..+++++++++++++++|++++++++++|+++++..++.++.++...+.++..++..+.+.|.++|+++||+||+|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 253 ISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYT 332 (616)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~ 332 (616)
.++|.+..++..+...+.....+.......++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCC-CCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcH
Q 007152 333 VAMKAAGASRRVFQLLDRVSSMPKSGN-QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 411 (616)
Q Consensus 333 ~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGK 411 (616)
.++++.++++|+.++++.+++.+.... ..+..+..+.|+|+||+|+||+.++.++|+|+||+|+||+++||||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 457 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCH
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcH
Confidence 999999999999999988765432221 1222334568999999999997767899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHH
Q 007152 412 STIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDF 491 (616)
Q Consensus 412 STL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~ 491 (616)
|||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||+||||+|||||||+||+| +++++++++||+.|++++|
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHHHHHHHHHccchhH
Confidence 999999999999999999999999999999999999999999999999999999999998 7999999999999999999
Q ss_pred HHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh
Q 007152 492 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 571 (616)
Q Consensus 492 i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l 571 (616)
|+.||+||||.|||+|.+||||||||||||||+|+||+||||||||||||++||+.+.++|+++.++||+|+||||++++
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred HHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHHh
Q 007152 572 QSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 572 ~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~~ 609 (616)
++||+|+||++|+|+|+|||+||++++|.|+++++.|.
T Consensus 617 ~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 617 RNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp TTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999998774
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-100 Score=857.69 Aligned_cols=575 Identities=26% Similarity=0.415 Sum_probs=525.3
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 28 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
...+++++++++++++.+++++++.++.+++.++.|++++.++|.+....+ ...++.+.++++++.++..++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 79 (587)
T 3qf4_A 8 GGGSKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--------FSLVLKTGILMLIVALIGAVG 79 (587)
T ss_dssp CCCCCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 334566778899999999999999999999999999999999998754322 122334445555666677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++.++..+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++.+++++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 159 (587)
T 3qf4_A 80 GIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAV 159 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999988888888888888889999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
+++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 160 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 239 (587)
T 3qf4_A 160 SINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSI 239 (587)
T ss_dssp HHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.+..+..+....+..++..+..++++++|++++.+|.+++|.++++..+...+..|+..++..+..++++..+++|+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 319 (587)
T 3qf4_A 240 ISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEV 319 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 348 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
++.+++.++.....+.++..+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 320 l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 320 LNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp HHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred HcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 98766543322221222345689999999999754 45799999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 428 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 428 ~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.+ ..++++++++++.++++++++++|+|+||.+||+|
T Consensus 399 ~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~ 477 (587)
T 3qf4_A 399 RVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGG 477 (587)
T ss_dssp EEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSS
T ss_pred EEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCC
Confidence 99999999999999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
.+||||||||++||||++++|+|+|||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCChhHHHHHHHhcCC
Q 007152 588 SGTHEELLSKGGVYTALVKRQLQEP 612 (616)
Q Consensus 588 ~G~~~eL~~~~~~y~~l~~~~~~~~ 612 (616)
+|+|+||+++++.|+++++.|..+.
T Consensus 558 ~g~~~el~~~~~~~~~~~~~~~~~~ 582 (587)
T 3qf4_A 558 FGTHKELLEHCKPYREIYESQFGNG 582 (587)
T ss_dssp EECHHHHHHHCHHHHHHHHHHC---
T ss_pred ECCHHHHHhCCcHHHHHHHHHhccc
Confidence 9999999999999999999887543
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.1e-100 Score=852.54 Aligned_cols=576 Identities=36% Similarity=0.542 Sum_probs=525.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 31 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 110 (616)
Q Consensus 31 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (616)
+++++++.+++++.++++++++++..++.++.|+++++++|.+......... .......+.++++++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTD-EKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHH-HHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999988653221000 000011123344455556677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 111 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 190 (616)
Q Consensus 111 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 190 (616)
+.++..+++.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+..++.+++.+++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
Q 007152 191 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 270 (616)
Q Consensus 191 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 270 (616)
|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||+|+.+.++|.+..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007152 271 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 350 (616)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~ 350 (616)
.+..+....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++++..+++|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999988888888888889999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEE
Q 007152 351 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKIL 430 (616)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~ 430 (616)
+++.++.....+.+...+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp CCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 76543322222222345689999999999854 45799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCC
Q 007152 431 LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 510 (616)
Q Consensus 431 idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~L 510 (616)
+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+ +.++++++++++.++++++++.+|+|+||.+||+|.+|
T Consensus 400 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 99999999999999999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 590 (616)
|||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|+++|+
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGT 558 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCChhHHHHHHHh
Q 007152 591 HEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 591 ~~eL~~~~~~y~~l~~~~~ 609 (616)
|+|++++++.|+++++.|.
T Consensus 559 ~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 559 HRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp HHHHHHTTSHHHHHHTTTT
T ss_pred HHHHHhCCcHHHHHHHhhc
Confidence 9999999999999998663
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.8e-102 Score=938.69 Aligned_cols=577 Identities=36% Similarity=0.562 Sum_probs=499.3
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+.+++.+.+++++.+++++++.++...+....++++..+++.....+... ......+.++++++.++..++.+
T Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~i~~~ 812 (1321)
T 4f4c_A 739 NLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADF------LSQGHFWALMFLVLAAAQGICSF 812 (1321)
T ss_dssp CHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTT------TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888888888888888888888888888888888765432211 11122345556666777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcc--cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
++.++....+.++..++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+..++..++.+++++++++
T Consensus 813 ~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~ 892 (1321)
T 4f4c_A 813 LMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAF 892 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeeh
Confidence 99999999999999999999999999999999986 7899999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
+++|++++++++++|++++...+..++..+...+..+..++....+.|+++|+++||+|++|+.+.++|.+..++..+..
T Consensus 893 ~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~ 972 (1321)
T 4f4c_A 893 FYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEA 972 (1321)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877777766666777777888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGAL--TSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 345 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~ 345 (616)
.+.....+....+...+..+..++++++|++++..|..+.+.+ +++..+......|+..+...+..+..+..+.+|+.
T Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~ 1052 (1321)
T 4f4c_A 973 IKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIF 1052 (1321)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888999999998888776544 44444444555677888889999999999999999
Q ss_pred HHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC
Q 007152 346 QLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 346 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~ 425 (616)
++++.+++.++.....+.++..+.|+|+||+|+||++++.|||+|+||+|+|||+||||||||||||||+++|+|+|+|+
T Consensus 1053 ~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1053 GMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 99998776543322222334567899999999999776778999999999999999999999999999999999999999
Q ss_pred CCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCccccccc
Q 007152 426 KGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVG 504 (616)
Q Consensus 426 ~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~-~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg 504 (616)
+|+|++||+|++++++++||++|+||||||+||+|||||||+||. |++++|+++++||+.|+++|||++||+||||+||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999994 4478999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 007152 505 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 584 (616)
Q Consensus 505 e~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~ 584 (616)
|+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++..++||+|+||||++++++||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhhcCChhHHHHHHHhcCC
Q 007152 585 IVESGTHEELLSKGGVYTALVKRQLQEP 612 (616)
Q Consensus 585 Ive~G~~~eL~~~~~~y~~l~~~~~~~~ 612 (616)
|+|+|+|+||++++|.|++|++.|..++
T Consensus 1293 IvE~Gth~eLl~~~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp EEEEECHHHHHHCC--------------
T ss_pred EEEECCHHHHHhCCcHHHHHHHHHHhcc
Confidence 9999999999999999999999987554
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-100 Score=855.06 Aligned_cols=573 Identities=32% Similarity=0.528 Sum_probs=529.4
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 28 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 107 (616)
Q Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (616)
...+++++++++++++.++++++++++.+++.++.|++++.++|.+....+ ...+..++++++++.++..++
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 93 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--------FDLLPRYMLILGTIYALTSLL 93 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--------GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 446788889999999999999999999999999999999999998764322 112233445556667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 108 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
.+++.++..+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+..++.+++.+++++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 173 (598)
T 3qf4_B 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMF 173 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
+++|++++++++++|+++++..++.++.++...+.++..+++.+.+.|.++|+++||+||+|+.+.++|.+..++..+..
T Consensus 174 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 253 (598)
T 3qf4_B 174 RVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG 253 (598)
T ss_dssp HHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.+..+..+....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 333 (598)
T 3qf4_B 254 TKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEI 333 (598)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 348 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
++.+++.+.+. ..+.++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|
T Consensus 334 l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 334 LDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp TTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred HcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 98776543221 1122234568999999999974 34799999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 428 KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 428 ~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
+|.+||+|+++++.+++|++|+||||+|++|++||+|||.++++ ..++++++++++.++++++++.+|+|+||.+||+|
T Consensus 411 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 489 (598)
T 3qf4_B 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489 (598)
T ss_dssp EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHH
T ss_pred EEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCC
Confidence 99999999999999999999999999999999999999999987 68889999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
.+||||||||++||||++++|++||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCChhHHHHHHHhcCC
Q 007152 588 SGTHEELLSKGGVYTALVKRQLQEP 612 (616)
Q Consensus 588 ~G~~~eL~~~~~~y~~l~~~~~~~~ 612 (616)
+|+|+||+++++.|+++++.|....
T Consensus 570 ~g~~~~l~~~~~~~~~~~~~~~~~~ 594 (598)
T 3qf4_B 570 MGKHDELIQKRGFYYELFTSQYGLV 594 (598)
T ss_dssp CSCHHHHHHTTCHHHHHHHHHHGGG
T ss_pred ECCHHHHHhCCCHHHHHHHHHhhhh
Confidence 9999999999999999999887543
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.1e-97 Score=831.93 Aligned_cols=568 Identities=33% Similarity=0.509 Sum_probs=521.4
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+++++++.+++++.+++.+++.++.+++.++.|+++++++|.+..... ...+..++++++++.++..++.+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 83 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--------SNFLRILPFMILGLMFVRGLSGF 83 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999999999999999999999999998764221 11122223334556677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 189 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 189 (616)
+..++..+.+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++..++.+++++++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 163 (582)
T 3b5x_A 84 ASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN 163 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 190 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 190 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
+|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3b5x_A 164 SWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMK 243 (582)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 349 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~ 349 (616)
..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~ 323 (582)
T 3b5x_A 244 LVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 350 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
.+++.++.. .+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 324 ~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 400 (582)
T 3b5x_A 324 LETERDNGK--YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI 400 (582)
T ss_pred CCCcCCCCC--CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence 765432211 1112234579999999999753 2579999999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~-~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
.+||+|+++++.+++|++|+||||+|++|++|++|||.++. + +.++++++++++.++++++++++|+|+||.+||+|.
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~ 479 (582)
T 3b5x_A 401 CLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGT 479 (582)
T ss_pred EECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCC
Confidence 99999999999999999999999999999999999999987 5 578999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.
T Consensus 480 ~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCChhHHHHHHHh
Q 007152 589 GTHEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 589 G~~~eL~~~~~~y~~l~~~~~ 609 (616)
|+|+|++++++.|+++++.|.
T Consensus 560 g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 560 GRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred CCHHHHHhCCcHHHHHHHHhh
Confidence 999999999999999999885
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-97 Score=832.98 Aligned_cols=569 Identities=34% Similarity=0.519 Sum_probs=521.6
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 29 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 108 (616)
Q Consensus 29 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (616)
..+++++++.+++++.++++++++++.+++.++.|+++++++|.+..... ...+..++++++++.++..++.
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 82 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--------RSVLLWMPLVVIGLMILRGITS 82 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--------HHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999999999999999999997753211 1122222333455667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 109 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 188 (616)
Q Consensus 109 ~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 188 (616)
+++.+...+.+.++..++|.++|+|++++|+++|++.++|++++|+++|++.+++++...+..++..++.++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 162 (582)
T 3b60_A 83 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY 162 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Q 007152 189 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 268 (616)
Q Consensus 189 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 268 (616)
++|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||+|+.+.++|.+..++..+...
T Consensus 163 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 242 (582)
T 3b60_A 163 YSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM 242 (582)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007152 269 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 348 (616)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l 348 (616)
+..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++++..+++|+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l 322 (582)
T 3b60_A 243 KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 322 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 349 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
+.+++.++.. .+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 323 DSEQEKDEGK--RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp HSCCSCCCCC--BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred cCCCCccCCC--CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 8765533211 1112234579999999999743 247999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC-CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 507 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~-~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G 507 (616)
|.+||+|+++++.+++|++|+||||+|++|++|++|||.++. + +.++++++++++.++++++++++|+|+||.+||+|
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 999999999999999999999999999999999999999987 5 57899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCChhHHHHHHHh
Q 007152 588 SGTHEELLSKGGVYTALVKRQL 609 (616)
Q Consensus 588 ~G~~~eL~~~~~~y~~l~~~~~ 609 (616)
.|+|+|++++++.|+++++.|.
T Consensus 559 ~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 559 RGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp EECHHHHHHHTSSHHHHHHHTC
T ss_pred ecCHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999999999874
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.2e-97 Score=832.54 Aligned_cols=578 Identities=45% Similarity=0.708 Sum_probs=506.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+++++++.+++++.++++++++++.+++.++.|++++.++|.+....... . ...+..++++++++.++..++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~ 80 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVD-Y----SDNLTRLCLGLSAVFLCGAAANA 80 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSC-C----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-h----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999999999999875321100 0 01122333444555666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 189 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 189 (616)
++.++..+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+..++..++.+++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 160 (595)
T 2yl4_A 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFV 160 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Q 007152 190 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 269 (616)
Q Consensus 190 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 269 (616)
+|++++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||+|+.+.++|.+..++..+...+
T Consensus 161 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 240 (595)
T 2yl4_A 161 SPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARK 240 (595)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007152 270 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 349 (616)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~ 349 (616)
..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~ 320 (595)
T 2yl4_A 241 EAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 320 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99888888888888888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCc-EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 350 RVSSMPKSGNQCPLGDQDGE-VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~-I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
.+++.++.....+.++..+. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 321 REPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp CCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred CCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 76543321111111123456 99999999997543357999999999999999999999999999999999999999999
Q ss_pred EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCC--CCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 007152 429 ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGER 506 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~--~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~ 506 (616)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.+. ..++++++++++.++++++++++|+|+||.+||+
T Consensus 401 i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp EEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred EEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 99999999999999999999999999999999999999999762 2688999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEE
Q 007152 507 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 586 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Iv 586 (616)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecChhHHhh-cCChhHHHHHHHhcCC
Q 007152 587 ESGTHEELLS-KGGVYTALVKRQLQEP 612 (616)
Q Consensus 587 e~G~~~eL~~-~~~~y~~l~~~~~~~~ 612 (616)
+.|+|+|+++ .++.|+++++.|....
T Consensus 561 ~~g~~~~l~~~~~~~~~~~~~~q~~~~ 587 (595)
T 2yl4_A 561 EYGKHEELLSKPNGIYRKLMNKQSFIS 587 (595)
T ss_dssp EEECSCC------C-------------
T ss_pred EECCHHHHHhCCChHHHHHHHHhhccc
Confidence 9999999998 4899999999886543
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.4e-94 Score=865.38 Aligned_cols=582 Identities=36% Similarity=0.542 Sum_probs=522.6
Q ss_pred chhHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------C-Cchh----HHHHHHHHHHHH
Q 007152 28 NVGFGRVLALAKP-DAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDT-------E-TPEQ----KAEALAAVRSTI 94 (616)
Q Consensus 28 ~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~-------~-~~~~----~~~~~~~~~~~~ 94 (616)
...+++++++..+ +++.++++++++++..++.++.|++++.++|.+.... . .... .......+..++
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 3456778887754 5677778888888888999999999999999764210 0 0000 000112233455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007152 95 LSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALR 174 (616)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~ 174 (616)
+.++++.++..++.+++.++..+.+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~ 191 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQ 191 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHH
Q 007152 175 NLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEIS 254 (616)
Q Consensus 175 ~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~ 254 (616)
.+++++++++++++++|++++++++++|+++++..++.++.++...+.++..++.++.+.|.++|+++||+||+|+.+.+
T Consensus 192 ~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~ 271 (1284)
T 3g5u_A 192 AMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 255 RYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVA 334 (616)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 334 (616)
+|.+..++..+...+..+..+...++..++..+..++++++|++++..|.+++|.+++++.+......|+..+...+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (1284)
T 3g5u_A 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAF 351 (1284)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888899999999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCC-CCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHH
Q 007152 335 MKAAGASRRVFQLLDRVSSMPKS-GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKST 413 (616)
Q Consensus 335 ~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKST 413 (616)
+++..+++|+.++++.+++.++. ....++++..+.|+|+||+|+|+++++.++|+|+||+|++||++||||||||||||
T Consensus 352 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 352 ANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp HHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999876654321 11111223456899999999998654568999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHH
Q 007152 414 IANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFIS 493 (616)
Q Consensus 414 L~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~ 493 (616)
|+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||+||++||+|||.+|.+ ++++++++++++.++++++++
T Consensus 432 l~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 689999999999999999999
Q ss_pred cCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhh
Q 007152 494 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS 573 (616)
Q Consensus 494 ~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~ 573 (616)
++|+|+||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+++..+++|+|+||||+++++.
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHHhc
Q 007152 574 ADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 610 (616)
Q Consensus 574 aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~~~ 610 (616)
||+|+||++|+|+|+|+|+||+++++.|++++..|..
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhh
Confidence 9999999999999999999999999999999987653
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-88 Score=817.22 Aligned_cols=578 Identities=34% Similarity=0.528 Sum_probs=518.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 30 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 109 (616)
Q Consensus 30 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (616)
.+++++++.+++++.+++++++.++..++.++.|++++.+++.+....... . .......+.++++++.++..++.+
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 692 SFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE-T---QRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-H---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-h---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888999999999999999999999999776432211 1 111223344455566667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc--ccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 110 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYD--VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 187 (616)
Q Consensus 110 ~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 187 (616)
++.++..+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++++...+..++..++.+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 48899999999999999999999999999999989999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCchHHHHHHHHHHHHHHHHHH
Q 007152 188 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 267 (616)
Q Consensus 188 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 267 (616)
.++|.+++++++++|++++......+..++...+..+..+.......|.++|+++||+|++|+.+.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888888999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 268 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 347 (616)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~ 347 (616)
.+.....+....+...+..+..++++++|++++..|.+++|.++++..+......|+..+......++++..+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888889999999999999999999999999999999888899999888888899999999999999
Q ss_pred hcccCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 007152 348 LDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK 426 (616)
Q Consensus 348 l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~ 426 (616)
++.+++..... ...+++...+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 1008 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp HHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred HcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 98766543211 11112233568999999999986544579999999999999999999999999999999999999999
Q ss_pred CEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 007152 427 GKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGE 505 (616)
Q Consensus 427 G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge 505 (616)
|+|.+||+|+++++.+++|++|+||||||.+|++||+|||.++.+. ..++++++++++.++++++++++|+||||.|||
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred CEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 9999999999999999999999999999999999999999999752 368999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 506 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
+|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|+||++|+|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EEecChhHHhhcCChhHHHHHHHhcC
Q 007152 586 VESGTHEELLSKGGVYTALVKRQLQE 611 (616)
Q Consensus 586 ve~G~~~eL~~~~~~y~~l~~~~~~~ 611 (616)
+|.|+|+||++++|.|++|++.|...
T Consensus 1248 ~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1248 KEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred EEECCHHHHHhCCCHHHHHHHHHhhc
Confidence 99999999999999999999988754
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.1e-72 Score=572.69 Aligned_cols=280 Identities=43% Similarity=0.681 Sum_probs=253.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCC
Q 007152 329 SLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSG 408 (616)
Q Consensus 329 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sG 408 (616)
.....++++.++++|++++++.+++..+.....+.+...+.|+++||+|+|++ ..++|+|+||+|++||++|||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred ccchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 34567778889999999999876554322221222223467999999999974 3479999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCc
Q 007152 409 GGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANA 488 (616)
Q Consensus 409 sGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l 488 (616)
||||||+++|+|+|+|++|+|++||.|+.+++..++|++|+||||+|++|++||+|||.++.+ ..++++++++++.+++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGI 169 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999999999999986 6889999999999999
Q ss_pred hHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc
Q 007152 489 HDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 568 (616)
Q Consensus 489 ~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl 568 (616)
++++..+|+||+|.+|++|.+||||||||++|||||+++|+|||||||||+||+.+++.|.+.|+++.+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHHhcC
Q 007152 569 STVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 611 (616)
Q Consensus 569 ~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~~~~ 611 (616)
+++..||+|++|++|+|++.|+|+||+++++.|+++|+.|...
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~~ 292 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHCC
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999988753
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.3e-60 Score=474.15 Aligned_cols=239 Identities=47% Similarity=0.736 Sum_probs=226.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
.+|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999532 3479999999999999999999999999999999999999999999999999999998899999
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+||||+|.+|++|++||+.++.+ ..++++++++++.+++.++++.+|.|+++.+++.+.+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999865 4678889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc-CChhHHHHH
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVK 606 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~-~~~y~~l~~ 606 (616)
|+++|||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++|+++. .+.|++++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 9999999999999999999999999988778999999999999989999999999999999999999987 888999987
Q ss_pred HH
Q 007152 607 RQ 608 (616)
Q Consensus 607 ~~ 608 (616)
.|
T Consensus 244 ~~ 245 (247)
T 2ff7_A 244 LQ 245 (247)
T ss_dssp HH
T ss_pred hh
Confidence 66
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.7e-59 Score=471.43 Aligned_cols=241 Identities=44% Similarity=0.748 Sum_probs=226.6
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++||+|+|++...+++|+|+||+|++|+++||+||||||||||+++|+|+++| +|+|.+||.++.+++...+|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753224699999999999999999999999999999999999987 8999999999998888899999
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+||||+|.+|+.|++|||.++.+ ..+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 999999999999999999999864 4567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHH
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 607 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~ 607 (616)
|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+++..
T Consensus 174 p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 253 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNM 253 (260)
T ss_dssp CSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHh
Confidence 99999999999999999999999999987789999999999999899999999999999999999999988999999988
Q ss_pred Hhc
Q 007152 608 QLQ 610 (616)
Q Consensus 608 ~~~ 610 (616)
|.+
T Consensus 254 ~~~ 256 (260)
T 2ghi_A 254 QSG 256 (260)
T ss_dssp HHC
T ss_pred hhh
Confidence 754
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-59 Score=468.67 Aligned_cols=237 Identities=47% Similarity=0.762 Sum_probs=223.6
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccCCCcCCccHHHHHhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 450 IVSQEPVLFNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g-~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
||||+|.+|++|++|||.++ .+ ..++++++++++.+++.++++.+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998 44 46788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHH
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 608 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~ 608 (616)
+++|||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++++..+.|++++..+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 99999999999999999999999998877899999999999998999999999999999999999998888899888765
Q ss_pred h
Q 007152 609 L 609 (616)
Q Consensus 609 ~ 609 (616)
.
T Consensus 239 ~ 239 (243)
T 1mv5_A 239 L 239 (243)
T ss_dssp C
T ss_pred h
Confidence 4
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.5e-58 Score=467.09 Aligned_cols=242 Identities=47% Similarity=0.783 Sum_probs=223.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.|+++||+|+|++..+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974212579999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCH-HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASS-ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~-~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|+||||++.+|+.|++|||.++.+ ..++ +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 3443 67888889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHH
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 604 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l 604 (616)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 9999999999999999999999999998754 89999999999999889999999999999999999999989999999
Q ss_pred HHHHhc
Q 007152 605 VKRQLQ 610 (616)
Q Consensus 605 ~~~~~~ 610 (616)
++.+.+
T Consensus 254 ~~~~~~ 259 (271)
T 2ixe_A 254 VEALAA 259 (271)
T ss_dssp HHC---
T ss_pred HHHhhc
Confidence 887643
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-56 Score=466.49 Aligned_cols=228 Identities=23% Similarity=0.433 Sum_probs=216.1
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
.+.|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.++++..+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3579999999999643 3579999999999999999999999999999999999998 8999999999999999999999
Q ss_pred ccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 447 KISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
.|+||||++.+|+.|++||+.+.. ...+++++++++.+++.+++++.|.+++|.++++|.+||||||||++|||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998653 357889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|++|++|+|++.|+++|++++.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999887789999999999999999999999999999999999999764
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=436.80 Aligned_cols=226 Identities=29% Similarity=0.513 Sum_probs=208.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+|+|++. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+|| .|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 48999999999642 34799999999999999999999999999999999999999999999999 59
Q ss_pred EEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 449 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+||||+|.+|+.|++|||.++.. .++++.+++++.+++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 146 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNA 146 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999753 3445677888889998899999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHH---HHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHH
Q 007152 529 RILLLDEATSALDAESEYLVQDAMD---SLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~---~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
+++|||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.++.||+|++|++|++++.|+++|+++..+.|.+++
T Consensus 147 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 226 (237)
T 2cbz_A 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFL 226 (237)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHH
Confidence 9999999999999999999999984 4446899999999999998999999999999999999999999999999999
Q ss_pred HHHhc
Q 007152 606 KRQLQ 610 (616)
Q Consensus 606 ~~~~~ 610 (616)
..|..
T Consensus 227 ~~~~~ 231 (237)
T 2cbz_A 227 RTYAS 231 (237)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 87753
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.7e-55 Score=432.09 Aligned_cols=222 Identities=28% Similarity=0.445 Sum_probs=202.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.|+++||+|+|++. ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 369999999999642 34799999999999999999999999999999999999999999999999 5
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+||||+|.+|++|++||+.++.. ..+.+..++++.+++.++++.+|.+++|.+++.+.+||||||||++|||||+++
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCcccCCCHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999853 345667788888999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHH
Q 007152 528 PRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l-~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
|+++|||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|.+++
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 9999999999999999999999874 55556899999999999998899999999999999999999998777777664
No 19
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.9e-53 Score=419.03 Aligned_cols=216 Identities=30% Similarity=0.452 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH----
Q 007152 370 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL---- 444 (616)
Q Consensus 370 I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~---- 444 (616)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2369999999999999999999999999999999999999999999999999999997764
Q ss_pred hcccEEEccCCCcCCc-cHHHHHhcCCC----CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 445 HRKISIVSQEPVLFNC-SIEENIAYGCD----GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~-TIreNi~~g~~----~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
|+.|+||||+|.+|+. |++||+.++.. ...+ .+++.++++.+++.+.. ......+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4579999999999987 99999987410 0122 23466677777765432 1233567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 593 (616)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888999999999999999998777
Q ss_pred Hh
Q 007152 594 LL 595 (616)
Q Consensus 594 L~ 595 (616)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 54
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.9e-53 Score=437.11 Aligned_cols=220 Identities=31% Similarity=0.505 Sum_probs=193.8
Q ss_pred CcEEEEeEEEECCCCC-CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---
Q 007152 368 GEVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH--- 443 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~-~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~--- 443 (616)
.-|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+..++..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996431 246899999999999999999999999999999999999999999999999999998765
Q ss_pred HhcccEEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 444 LHRKISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
+|+.|+||||++.+|+. |++||+.++.. ...+ ++++.++++.+++.++.++.| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 47899999999999875 99999998621 0122 345788888888877665554 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 594 (616)
++|||||+.+|++||||||||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 3899999999999875 5999999999999999999999
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
+.+.
T Consensus 252 ~~~p 255 (366)
T 3tui_C 252 FSHP 255 (366)
T ss_dssp HSSC
T ss_pred HhCC
Confidence 8753
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8e-53 Score=424.86 Aligned_cols=219 Identities=29% Similarity=0.484 Sum_probs=189.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~--~~~~~~~r~ 446 (616)
.|+++||+|+|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999743 35999999999999999999999999999999999999999999999999994 334567889
Q ss_pred ccEEEccCC--CcCCccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~--~lf~~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
.|+||||+| .+|+.|++||+.++.. ...+ ++++.++++.+++.++.+. ...+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHHHHHHHH
Confidence 999999998 5788999999998631 0122 3457778888887665433 34679999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 3899999999999885 599999999999999999999987
Q ss_pred cCCh
Q 007152 597 KGGV 600 (616)
Q Consensus 597 ~~~~ 600 (616)
....
T Consensus 234 ~~~~ 237 (275)
T 3gfo_A 234 EKEV 237 (275)
T ss_dssp HHHH
T ss_pred CHHH
Confidence 5433
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-51 Score=409.70 Aligned_cols=220 Identities=28% Similarity=0.444 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH-hcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL-HRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~-r~~ 447 (616)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999998887665 456
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|+||||++.+|.+ |++||+.++.....+.++..+.++ +.++.++ |++...+....+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 999999997411122222222222 2333333 34455566678999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 689999999999765 67999999999999999999998753
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-51 Score=419.30 Aligned_cols=217 Identities=28% Similarity=0.439 Sum_probs=183.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.|+++||+|.| .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999964 2599999999999999999999999999999999999999999999998 5
Q ss_pred cEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 448 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 448 i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
|+||||++.+|++|++||+. +. ...+.++.++++.+++.+++..+|.+++|.+++.+.+||||||||++|||||+++
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999998 53 2345567788888999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHH-HHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHH
Q 007152 528 PRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l-~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
|+++|||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.++.||+|++|++|++++.|+++|+++..+.|.+.+
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKL 256 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHHH
Confidence 9999999999999999999999874 44556899999999999998999999999999999999999987555555443
No 24
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-51 Score=408.53 Aligned_cols=215 Identities=31% Similarity=0.476 Sum_probs=190.1
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999963 479999999999999999999999999999999999999999999999999976 56778899
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
|+||||++.+|.+ |++||+.++.. ...+ ++++.++++..++.++.++ ...+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999999876 99999988521 0112 2457788888888766443 3457999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++|+.+.
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999998875 58999999999998876 999999999999999999999753
No 25
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.5e-51 Score=412.93 Aligned_cols=215 Identities=28% Similarity=0.446 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999963 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCc-CCccHHHHHhcCCCC---CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 449 SIVSQEPVL-FNCSIEENIAYGCDG---KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g~~~---~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
+|++|++.+ |+.|++||+.++... ...++++.++++..++.++.++ ...+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 999999987 678999999987421 2235668888888887655332 2357999999999999999
Q ss_pred cc------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 007152 525 MM------NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 525 l~------~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+. +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988752 469999999999875 69999999999999999999987
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3e-51 Score=411.04 Aligned_cols=216 Identities=32% Similarity=0.470 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~--~~~~~~~r~ 446 (616)
.|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 36999999999999999999999999999999999999999999999999985 345567788
Q ss_pred ccEEEccCCCcCCc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEPVLFNC-SIEENIAYGC--DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~~lf~~-TIreNi~~g~--~~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
.|+||||++.+|.. |++||+.++. ....+ ++++.++++..++.++.++ ...+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999876 9999999852 10122 3457788888887665433 24679999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 4899999999999876 5999999999999999999999865
Q ss_pred C
Q 007152 598 G 598 (616)
Q Consensus 598 ~ 598 (616)
.
T Consensus 250 ~ 250 (263)
T 2olj_A 250 P 250 (263)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.1e-51 Score=401.11 Aligned_cols=209 Identities=27% Similarity=0.357 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH---LH 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~---~r 445 (616)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887653 34
Q ss_pred -cccEEEccCCCcCC-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 446 -RKISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 446 -~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+.|+||||++.+|. .|++||+.++.. ... .++++.++++..++.++.+.. ..+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-----------PYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-----------GGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHH
Confidence 78999999999986 599999988521 011 134577778887776544332 357999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~ 591 (616)
+|||||+.+|+++|||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 58999999999998888999999999999999873
No 28
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-50 Score=407.87 Aligned_cols=215 Identities=28% Similarity=0.476 Sum_probs=190.4
Q ss_pred EEEEeEEEECCCCCC--CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 370 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~--~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
|+++||+|+|+.... .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred cEEEccCC--CcCCccHHHHHhcCCC----CCCCHHHHHHHHHHcCch--HHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 448 ISIVSQEP--VLFNCSIEENIAYGCD----GKASSADIENAAKMANAH--DFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 448 i~~v~Q~~--~lf~~TIreNi~~g~~----~~~~~~~i~~al~~a~l~--~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
|+||||+| .+++.|++||+.++.. ....++++.++++.+++. ++.++.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 5678999999998732 122356789999999998 7766555 579999999999
Q ss_pred HHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 007152 520 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 520 lARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 58999999999998865 999999999999999999999765
Q ss_pred C
Q 007152 598 G 598 (616)
Q Consensus 598 ~ 598 (616)
.
T Consensus 229 ~ 229 (266)
T 2yz2_A 229 Y 229 (266)
T ss_dssp S
T ss_pred c
Confidence 3
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.7e-51 Score=408.25 Aligned_cols=216 Identities=32% Similarity=0.463 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC----------C
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV----------E 438 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~----------~ 438 (616)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999963 46999999999999999999999999999999999999999999999999986 2
Q ss_pred CCH---HHHhcccEEEccCCCcCCc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHH-HHcCCCcccccccCCC
Q 007152 439 ISH---EHLHRKISIVSQEPVLFNC-SIEENIAYGC--DGKAS----SADIENAAKMANAHDF-ISNFPEKYQTFVGERG 507 (616)
Q Consensus 439 ~~~---~~~r~~i~~v~Q~~~lf~~-TIreNi~~g~--~~~~~----~~~i~~al~~a~l~~~-i~~Lp~GldT~vge~G 507 (616)
++. ..+|+.++||||++.+|.. |++||+.++. ....+ ++++.++++..++.++ .++. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 444 3567889999999999876 9999999852 00122 3457888888888776 4443 3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEE
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 585 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~I 585 (616)
.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 5799999999999999999999999999999999999999999998875 4899999999999875 6999999999999
Q ss_pred EEecChhHHhhcC
Q 007152 586 VESGTHEELLSKG 598 (616)
Q Consensus 586 ve~G~~~eL~~~~ 598 (616)
++.|+++++.+..
T Consensus 232 ~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 232 EEEGDPEQVFGNP 244 (262)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCc
Confidence 9999999998653
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-50 Score=406.52 Aligned_cols=211 Identities=26% Similarity=0.399 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRK 447 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~ 447 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 369999999999999999999999999999999999999999999999999988775 446788
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCC---C-----------CC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCC
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDG---K-----------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGV 508 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~---~-----------~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~ 508 (616)
|+||||++.+|. .|++||+.++... . .+ .+++.++++..++.++ ......
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCch
Confidence 999999999886 6999999986321 1 11 2345566666665443 334456
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhh-hcCEEEEEeCCEEE
Q 007152 509 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 586 (616)
Q Consensus 509 ~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv 586 (616)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998875 4899999999999875 69999999999999
Q ss_pred EecChhH
Q 007152 587 ESGTHEE 593 (616)
Q Consensus 587 e~G~~~e 593 (616)
+.|+++|
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 31
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.3e-50 Score=420.38 Aligned_cols=216 Identities=31% Similarity=0.515 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC--CCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE--ISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~--~~~~~~r~ 446 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 479999999999999999999999999999999999999999999999999832 22344577
Q ss_pred ccEEEccCCCcCC-ccHHHHHhcCCCC-C----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 447 KISIVSQEPVLFN-CSIEENIAYGCDG-K----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 447 ~i~~v~Q~~~lf~-~TIreNi~~g~~~-~----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
.|+||+|++.+|. -|++|||.|+... . ..++++.++++.+++.++.++.| .+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999996 4999999997421 1 12356888899998887766555 5799999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
||||+.+|++||||||||+||+.+...+.+.+.++. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 489999999999876 56999999999999999999999876
Q ss_pred C
Q 007152 598 G 598 (616)
Q Consensus 598 ~ 598 (616)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 4
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.2e-50 Score=400.61 Aligned_cols=209 Identities=25% Similarity=0.360 Sum_probs=189.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+|+ ++|+|+||+|++|++++|+||||||||||+++|+|+++|+ |+|.++|.++.+++...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999985 4899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 527 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~ 527 (616)
+||||++.+|.+ |++||+.++.....+++++.++++..++.++.+ ....+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998875 999999997421224777899999998876643 33568999999999999999999
Q ss_pred CC-------EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhh
Q 007152 528 PR-------ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 528 p~-------iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|+ +||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 589999999999987 6799999999999999999999975
No 33
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.5e-50 Score=421.11 Aligned_cols=214 Identities=30% Similarity=0.482 Sum_probs=190.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988765 4679
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||+|++.+|+. |++|||.|+.. ...+ ++++.++++.+++.++.++.| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 999999999975 99999999631 0122 356788889888877765555 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999999999988743 89999999999876 569999999999999999999998754
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.6e-50 Score=409.66 Aligned_cols=215 Identities=26% Similarity=0.372 Sum_probs=186.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC--CCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV--EISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~--~~~~~~~r~ 446 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 36999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ccEEEccCCCc-CCc--cHHHHHhcCCCC------CCC---HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 447 KISIVSQEPVL-FNC--SIEENIAYGCDG------KAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 447 ~i~~v~Q~~~l-f~~--TIreNi~~g~~~------~~~---~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
.|+||||++.+ |.. |++||+.++... ... ++++.++++..++.++.+ ....+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----------QYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHH
Confidence 99999999875 555 999999986310 012 245677788777765432 3346799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-CCeE--EEEecCchhh-hhcCEEEEEeCCEEEEecC
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTV--LVIAHRLSTV-QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-~~T~--I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 590 (616)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+ +.||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988753 7899 9999999987 5699999999999999999
Q ss_pred hhHHhhc
Q 007152 591 HEELLSK 597 (616)
Q Consensus 591 ~~eL~~~ 597 (616)
++++.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-50 Score=396.75 Aligned_cols=209 Identities=32% Similarity=0.477 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|+ + +|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ .+|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEccCCCcCCc-cHHHHHhcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
||||++.+|.. |++||+.++.. .. .++++.++++..++.++.++. ..+||||||||++|||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARAL 141 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHH
T ss_pred EEcCCCccCCCCcHHHHHHHHHH-HcCCchHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999999986 99999999743 11 135577888888776654433 357999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|+++..
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999988743 89999999999976 569999999999999999999998654
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-49 Score=414.57 Aligned_cols=215 Identities=29% Similarity=0.499 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||||++.+|+. |++|||.|+... ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 999999997421 111 346888999999988766655 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcCC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGG 599 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~~ 599 (616)
||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++..
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 79999999999876 5799999999999999999999987643
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.6e-50 Score=416.24 Aligned_cols=214 Identities=36% Similarity=0.589 Sum_probs=189.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999953 3699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||||++.+|+. |++|||.|+.. ...+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999998621 0112 346788899988877665555 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999988753 89999999999876 679999999999999999999998764
No 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-49 Score=413.29 Aligned_cols=216 Identities=30% Similarity=0.538 Sum_probs=190.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 46999999999942 2369999999999999999999999999999999999999999999999999987654 4788
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
|+||+|++.+|+. |++|||.|+.. ...+ ++++.++++..++.++.++.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999975 99999998631 0112 356888999999887766555 57999999999999
Q ss_pred HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 522 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 522 RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
|||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 79999999999876 569999999999999999999998754
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3e-49 Score=413.65 Aligned_cols=214 Identities=28% Similarity=0.499 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 3699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred EEEccCCCcCCc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~-TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+||||++.+|.. |++|||.|+... ..+ ++++.++++..++.++.++.| .+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999964 999999997421 122 245788899999887766655 579999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988753 79999999999876 579999999999999999999998764
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.2e-49 Score=411.50 Aligned_cols=212 Identities=34% Similarity=0.558 Sum_probs=189.1
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
|+++||+++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .|+.|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccCCCcCCc-cHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 450 IVSQEPVLFNC-SIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 450 ~v~Q~~~lf~~-TIreNi~~g~~--~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
||||++.+|+. |++|||.|+.. ....++++.++++..++.++.++.| .+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 0112377899999999887765554 5799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhcC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 598 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 598 (616)
+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998874 389999999999875 679999999999999999999998754
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.7e-50 Score=398.97 Aligned_cols=211 Identities=28% Similarity=0.500 Sum_probs=176.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-h
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-H 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~-r 445 (616)
.|+++||+|+|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 4799999999999999999999999999999999999 89999999999999998887665 4
Q ss_pred cccEEEccCCCcCCc-cHHHHHhcCCC---C-CCC----HHHHHHHHHHcCch-HHHHcCCCcccccccCCCCC-CChhH
Q 007152 446 RKISIVSQEPVLFNC-SIEENIAYGCD---G-KAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERGVR-LSGGQ 514 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-TIreNi~~g~~---~-~~~----~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~-LSGGQ 514 (616)
..++||||+|.+|++ |++||+.++.. . ... ++++.++++..++. ++.++. + .+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-------~----~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-------L----NEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-------T----TCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-------c----ccCCCHHH
Confidence 569999999999986 99999987521 0 111 24566777777763 333322 2 34 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecCh
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGTH 591 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~--aD~Iivl~~G~Ive~G~~ 591 (616)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 47899999999999876 599999999999999998
Q ss_pred hH
Q 007152 592 EE 593 (616)
Q Consensus 592 ~e 593 (616)
++
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-49 Score=414.68 Aligned_cols=216 Identities=31% Similarity=0.495 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCCc--ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC---HHH
Q 007152 369 EVELDDVWFAYPSRPNHM--VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS---HEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~--vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~---~~~ 443 (616)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 36 999999999999999999999999999999999999999999999999986521 234
Q ss_pred HhcccEEEccCCCcCCc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 444 LHRKISIVSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~~-TIreNi~~g~~~-~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
.++.|+||||++.+|+. |++|||.|+... ..+ ++++.++++..++.++.++.| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 57889999999999975 999999997421 112 356888999999887766555 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHH
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 594 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 594 (616)
++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 79999999999976 56999999999999999999999
Q ss_pred hhcC
Q 007152 595 LSKG 598 (616)
Q Consensus 595 ~~~~ 598 (616)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8764
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.5e-49 Score=412.50 Aligned_cols=214 Identities=28% Similarity=0.516 Sum_probs=188.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC------CCHH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE------ISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~------~~~~ 442 (616)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 4899999999963 469999999999999999999999999999999999999999999999999876 544
Q ss_pred HHhcccEEEccCCCcCC-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHH
Q 007152 443 HLHRKISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 516 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQ 516 (616)
.++.|+||||++.+|. .|++|||.|+.. ...+ ++++.++++..++.++.++.| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999996 599999998631 0112 346788899998887766555 579999999
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhH
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 593 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 593 (616)
|++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 79999999999976 5699999999999999999999
Q ss_pred HhhcC
Q 007152 594 LLSKG 598 (616)
Q Consensus 594 L~~~~ 598 (616)
++++.
T Consensus 227 l~~~p 231 (372)
T 1g29_1 227 VYDKP 231 (372)
T ss_dssp HHHSC
T ss_pred HHhCc
Confidence 98764
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.9e-49 Score=396.37 Aligned_cols=214 Identities=25% Similarity=0.405 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCCEEEECCEeCCCCCHHHH-h
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF--YDPIKGKILLNGVPLVEISHEHL-H 445 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~--~~~~~G~I~idg~~i~~~~~~~~-r 445 (616)
.|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+ ++|++|+|.++|.++..++...+ |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4799999999999999999999999999999999999 57999999999999988887665 4
Q ss_pred cccEEEccCCCcCCc-cHHHHHhcCC--------CCCCCH----HHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCC
Q 007152 446 RKISIVSQEPVLFNC-SIEENIAYGC--------DGKASS----ADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLS 511 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-TIreNi~~g~--------~~~~~~----~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LS 511 (616)
..++||||++.+|.+ |++||+.++. ....+. +++.++++..++.+ .. +..+ +.+||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~---~~~LS 166 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL-------TRSV---NVGFS 166 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT-------TSBT---TTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cCCc---ccCCC
Confidence 569999999999876 9999997531 001222 34556666665532 11 1111 12599
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEe
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVES 588 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~--aD~Iivl~~G~Ive~ 588 (616)
||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998874 47899999999998875 899999999999999
Q ss_pred cChhHHh
Q 007152 589 GTHEELL 595 (616)
Q Consensus 589 G~~~eL~ 595 (616)
|+++++.
T Consensus 247 g~~~~~~ 253 (267)
T 2zu0_C 247 GDFTLVK 253 (267)
T ss_dssp ECTTHHH
T ss_pred cCHHHHh
Confidence 9999874
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-48 Score=389.99 Aligned_cols=202 Identities=26% Similarity=0.374 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.|+++||+++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. +++.|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999962 23699999999999999999999999999999999999999999998 35689
Q ss_pred EEEccCCCcC-CccHHHHHhcCCC---------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 449 SIVSQEPVLF-NCSIEENIAYGCD---------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 449 ~~v~Q~~~lf-~~TIreNi~~g~~---------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+||||++.+| +.|++||+.++.. ....++++.++++..++.++.++ ...+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHH
Confidence 9999999987 6799999998631 01113557888888888765443 3468999999999
Q ss_pred HHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 007152 519 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 519 alARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++|+.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999988753 79999999999987 5799999999999 9999999987
Q ss_pred hc
Q 007152 596 SK 597 (616)
Q Consensus 596 ~~ 597 (616)
+.
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-48 Score=390.93 Aligned_cols=209 Identities=20% Similarity=0.319 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCC-CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 370 VELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~-~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
|+++||+++|++. ..+++|+|+||+|+ |++++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998765 33 7789
Q ss_pred E-EEccCCCcCCccHHHHHhcCCC-CCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 449 S-IVSQEPVLFNCSIEENIAYGCD-GKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 449 ~-~v~Q~~~lf~~TIreNi~~g~~-~~~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
+ ||||++.+ +.|++||+.++.+ ...+++++.++++..++. +.. .....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----------RRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGG-----------GSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHh-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999999 9999999998631 024567788888888776 443 3445689999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh-hhcC-EEEEEeCCEEEEecChhHHhhc
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSAD-TVAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l-~~aD-~Iivl~~G~Ive~G~~~eL~~~ 597 (616)
++|++||||||||+||+.+.+.+.+.|+++.+ |+|+|||+++.+ +.|| +|++|++|++++.|+++|+.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999988754 999999999987 5699 9999999999999999999753
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-47 Score=371.16 Aligned_cols=196 Identities=26% Similarity=0.437 Sum_probs=168.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3699999999995 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred cEEEccCCCcCCc-cHHHHHhcCCC--C-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 448 ISIVSQEPVLFNC-SIEENIAYGCD--G-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 448 i~~v~Q~~~lf~~-TIreNi~~g~~--~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
|+||||++.+|.+ |++||+.++.. . ..+++++.++++..++.+. .....+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHH
Confidence 9999999999986 99999988621 0 1235677888877765432 34567899999999999999
Q ss_pred HccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 007152 524 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 585 (616)
Q Consensus 524 ll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~I 585 (616)
|+++|+++|||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+| ++.+|+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v-~~~~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL-HKYSTKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEG-GGGBC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE-EEeCCcc
Confidence 999999999999999999999999999998875 47899999999998876 5555 4556776
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.8e-45 Score=374.52 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=200.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEE
Q 007152 299 LTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFA 378 (616)
Q Consensus 299 ~v~~g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~ 378 (616)
-...+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++...... +.+...+.|+++||+|+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHH
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEE
Confidence 334556677888888888766 479999999999999999999999999986543221111 11111235899999999
Q ss_pred CCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC
Q 007152 379 YPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF 458 (616)
Q Consensus 379 Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf 458 (616)
|+ .++|+|+||+|++|++++||||||||||||+++|+|++ +|+| ++|++|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 96 36999999999999999999999999999999999999 7998 46789999999
Q ss_pred CccHHH-HHhcCCCCCCCHHHHHHHHHHcCchHHHHc-CCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCc
Q 007152 459 NCSIEE-NIAYGCDGKASSADIENAAKMANAHDFISN-FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 536 (616)
Q Consensus 459 ~~TIre-Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~-Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEp 536 (616)
++|++| ||.++ + ++++ +++++++. ||+|+| |.+|||||||| |||++++|+|||
T Consensus 166 ~~ti~~~ni~~~-~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 166 LASLADTRAALV-D-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp GGGGTTCSCEEE-E-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred cccHHHHhhccC-c-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 999998 99997 3 4554 23467777 999998 78999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhcCChhHHHHHHHhc
Q 007152 537 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 610 (616)
Q Consensus 537 TSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~~~y~~l~~~~~~ 610 (616)
||+||+++++.+.. +|||++.++.||+| +|++|+|++.|+|+|| ++.|++++..+..
T Consensus 221 Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLDL 277 (305)
T ss_dssp EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTTC
T ss_pred ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHccc
Confidence 99999999998852 39999999999999 9999999999999999 6789998876643
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.5e-38 Score=351.07 Aligned_cols=200 Identities=26% Similarity=0.319 Sum_probs=169.8
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++++|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999953 36999999999999999999999999999999999999999999862 379
Q ss_pred EEEccCCCc-CCccHHHHHhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 449 SIVSQEPVL-FNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g-~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+|+||++.+ ++.|++||+... .+....++++.++++..++.++. + ....+||||||||++|||||+.
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------D----RNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------T----SBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------c----CChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 678999999764 11001244566777776665432 2 2235799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeC--CEEEEecChhHHhh
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 596 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~--G~Ive~G~~~eL~~ 596 (616)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |++++.|+.++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 5899999999999876 5999999986 88888999988875
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.8e-38 Score=348.44 Aligned_cols=200 Identities=26% Similarity=0.314 Sum_probs=168.2
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999953 3699999999999999999999999999999999999999999986 2369
Q ss_pred EEEccCCCc-CCccHHHHHhcC-CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 449 SIVSQEPVL-FNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 449 ~~v~Q~~~l-f~~TIreNi~~g-~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+||||++.. ++.|+.||+... .+....++++.++++..++.+. ......+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-----------YDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 577999998754 1101123445566665555433 223345799999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeC--CEEEEecChhHHhh
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 596 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~--G~Ive~G~~~eL~~ 596 (616)
+|++|||||||++||..+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |++++.|+.++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 4899999999999876 5999999986 78889999988765
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-37 Score=342.27 Aligned_cols=201 Identities=22% Similarity=0.285 Sum_probs=168.0
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..++++|++++|++ ..|++.||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35899999999953 4688899999999999999999999999999999999999999998763 6
Q ss_pred cEEEccCCCc-CCccHHHHHhcCCCCC--CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 448 ISIVSQEPVL-FNCSIEENIAYGCDGK--ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 448 i~~v~Q~~~l-f~~TIreNi~~g~~~~--~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
++|+||++.. |..|+++|+.+..... ...+.+.++++..++.++.+ ....+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----------SNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-----------SBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 8999999874 5789999998753211 22344566677766654432 33457999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHh
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD--GEIVESGTHEELL 595 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~--G~Ive~G~~~eL~ 595 (616)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |.+...|+..++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999998874 48899999999998764 999999986 5666677765543
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4e-37 Score=353.23 Aligned_cols=199 Identities=26% Similarity=0.401 Sum_probs=155.3
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhccc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i 448 (616)
-|+++||+|+|++. ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 48999999999753 357999999999999999999999999999999999999999999999872 147
Q ss_pred EEEccCCCc-----CCccHHHHHh--------------------------------------------------------
Q 007152 449 SIVSQEPVL-----FNCSIEENIA-------------------------------------------------------- 467 (616)
Q Consensus 449 ~~v~Q~~~l-----f~~TIreNi~-------------------------------------------------------- 467 (616)
+|++|++.. ++.|+++|+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 788777531 1234444443
Q ss_pred ----------cCCC----------------------------------------CCCCHHHHHHHHHHcCchHHHHcCCC
Q 007152 468 ----------YGCD----------------------------------------GKASSADIENAAKMANAHDFISNFPE 497 (616)
Q Consensus 468 ----------~g~~----------------------------------------~~~~~~~i~~al~~a~l~~~i~~Lp~ 497 (616)
++.+ ....++++.++++..++.+...
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---- 894 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---- 894 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH----
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh----
Confidence 2110 0112344555555555543210
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCE
Q 007152 498 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADT 576 (616)
Q Consensus 498 GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~ 576 (616)
......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+. .||+
T Consensus 895 -----~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~Dr 967 (986)
T 2iw3_A 895 -----SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEE 967 (986)
T ss_dssp -----HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCE
T ss_pred -----cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCE
Confidence 12234679999999999999999999999999999999999999999999765 579999999999875 6999
Q ss_pred EEEEeCCEEEEecC
Q 007152 577 VAVVSDGEIVESGT 590 (616)
Q Consensus 577 Iivl~~G~Ive~G~ 590 (616)
|++|++|++++.|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999988775
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.4e-37 Score=339.95 Aligned_cols=197 Identities=24% Similarity=0.314 Sum_probs=160.7
Q ss_pred cEEE--------EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE---------EE
Q 007152 369 EVEL--------DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI---------LL 431 (616)
Q Consensus 369 ~I~~--------~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I---------~i 431 (616)
.|++ +||+++|++. ..+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 9999999642 25899999 999999999999999999999999999999999996 45
Q ss_pred CCEeCCCCCHHH--HhcccEEEccCCC----cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 007152 432 NGVPLVEISHEH--LHRKISIVSQEPV----LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 505 (616)
Q Consensus 432 dg~~i~~~~~~~--~r~~i~~v~Q~~~----lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge 505 (616)
+|.++..+.... .+..+++++|+.. ++.+|++||+.... ..+++.++++..++.+..++.
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~~~~---------- 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVLDRE---------- 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGGGSB----------
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchhCCC----------
Confidence 665543321111 2346889888743 45579999997632 134577888888876554332
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 007152 506 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 583 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G 583 (616)
-.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+++
T Consensus 226 -~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 -LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp -GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 24699999999999999999999999999999999999999999998874 48999999999998764 8999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=8.1e-35 Score=334.18 Aligned_cols=198 Identities=24% Similarity=0.327 Sum_probs=165.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
..+...|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 46888899999963 469999999999999999999999999999999996 554 5544321 124
Q ss_pred cEEEccCC-Cc-CCccHHHHHhcCCCCCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 448 ISIVSQEP-VL-FNCSIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 448 i~~v~Q~~-~l-f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
++|++|++ .+ .+-|+.||+.+... .. ++++.++++..++. +..++.+ .+||||||||++|||||
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~-~~-~~~v~~~L~~lgL~~~~~~~~~-----------~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGV-GT-KEAIKDKLIEFGFTDEMIAMPI-----------SALSGGWKMKLALARAV 563 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCS-SC-HHHHHHHHHHTTCCHHHHHSBG-----------GGCCHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhc-CH-HHHHHHHHHHcCCChhhhcCCc-----------ccCCHHHHHHHHHHHHH
Confidence 78999985 34 45699999986221 22 77899999999984 4443322 46999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCEEE-EecChhHHhhc
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV-ESGTHEELLSK 597 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~Iv-e~G~~~eL~~~ 597 (616)
+.+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 999999999999999999999999999988 5899999999999886 59999999999997 58999998754
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-36 Score=334.57 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=166.8
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCC-----CEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSG-----SKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G-----~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
++++|+|++. ..+++|+||++++| |++||+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 6788999743 35799999999999 8899999999999999999999999999973 11 246
Q ss_pred cEEEccCCC-cCCccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 448 ISIVSQEPV-LFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 448 i~~v~Q~~~-lf~~TIreNi~~g~~~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
++|+||++. .|+.|+++|+...... ..+.+...++++..++.+..+ ..-.+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-----------~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-----------QEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-----------SBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 999999976 5788999998753221 234555677777777654432 233579999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEeC--CEEEEecChhHHhhc
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLSK 597 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~~--G~Ive~G~~~eL~~~ 597 (616)
.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 4899999999999875 5999999996 999999999999874
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-36 Score=335.35 Aligned_cols=196 Identities=26% Similarity=0.330 Sum_probs=156.2
Q ss_pred EEE-EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE---------EECCEeCCCC
Q 007152 370 VEL-DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI---------LLNGVPLVEI 439 (616)
Q Consensus 370 I~~-~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I---------~idg~~i~~~ 439 (616)
-++ +||+++|++. .++|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 6899999642 25899999 999999999999999999999999999999999996 4566554322
Q ss_pred CHHH--HhcccEEEccCCCc----CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 440 SHEH--LHRKISIVSQEPVL----FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 440 ~~~~--~r~~i~~v~Q~~~l----f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
.... .+..+++++|+... +.+|++||+.... ..+++.++++..++.+.. +.. -.+||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~~-------~~~----~~~LSgG 162 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENVL-------ERE----IQHLSGG 162 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTTT-------TSB----GGGCCHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChhh-------hCC----hhhCCHH
Confidence 1111 12468899987543 3469999997532 134577888888875432 222 3469999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 583 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G 583 (616)
||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999998874 48999999999998865 9999999864
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.4e-36 Score=340.53 Aligned_cols=207 Identities=23% Similarity=0.348 Sum_probs=138.2
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHHcCCCCC-------CCEEEECCEeC
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIA---------------------NLIERFYDPI-------KGKILLNGVPL 436 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~---------------------~lL~g~~~~~-------~G~I~idg~~i 436 (616)
.++|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3689999999999999999999999999998 8999999998 55666666554
Q ss_pred CCCCHHHHhcccEEEccCCCcC--------------------CccHHHHHhcCCCCCCCH--HH-----HHHHHHHcCch
Q 007152 437 VEISHEHLHRKISIVSQEPVLF--------------------NCSIEENIAYGCDGKASS--AD-----IENAAKMANAH 489 (616)
Q Consensus 437 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~TIreNi~~g~~~~~~~--~~-----i~~al~~a~l~ 489 (616)
.. ..++.+++|+|.+.++ .-|++||+.+.......+ .+ ..++.+..+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLG-- 184 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHH--
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHH--
Confidence 32 2355677777765443 458999998853111111 11 111111111
Q ss_pred HHHHcCCCccccc-ccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEe
Q 007152 490 DFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 565 (616)
Q Consensus 490 ~~i~~Lp~GldT~-vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~It 565 (616)
.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+||
T Consensus 185 -~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 185 -FLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp -HHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred -HHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 12211 22111 123345799999999999999999988 999999999999999999999998875 589999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCCh
Q 007152 566 HRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGGV 600 (616)
Q Consensus 566 Hrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~~~ 600 (616)
|+++.+..||+|++| ++|++++.|+.+|+.+....
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~ 302 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNS 302 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTC
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchh
Confidence 999999999999999 89999999999999876543
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=6.3e-36 Score=339.97 Aligned_cols=206 Identities=26% Similarity=0.363 Sum_probs=155.4
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH----------------------cCCCCCCCEEEECCEeCCCCCHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE----------------------RFYDPIKGKILLNGVPLVEISHE 442 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~----------------------g~~~~~~G~I~idg~~i~~~~~~ 442 (616)
.++|+||||+|++||++||+||||||||||+++++ |+ .+..|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl-~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGL-EHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECG-GGCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccc-cccCceeEeccccCCCCCCc
Confidence 36899999999999999999999999999998764 33 33457899999888654422
Q ss_pred HHhc-----------------------------------------ccEEEccCCCc------------------------
Q 007152 443 HLHR-----------------------------------------KISIVSQEPVL------------------------ 457 (616)
Q Consensus 443 ~~r~-----------------------------------------~i~~v~Q~~~l------------------------ 457 (616)
..+. ..++++|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 11333333222
Q ss_pred ---------CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 458 ---------FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 458 ---------f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+.-|++||+.+... ....++..+++...++.+ ...+....+||||||||++|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~-~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS-IPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT-CHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH-hhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 23589999988743 222334445555544421 1234556789999999999999999887
Q ss_pred ---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcC
Q 007152 529 ---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKG 598 (616)
Q Consensus 529 ---~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~ 598 (616)
++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++| ++|+|++.|+++|+.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 5999999999999999999999998875 589999999999999999999999 899999999999998765
Q ss_pred ChhH
Q 007152 599 GVYT 602 (616)
Q Consensus 599 ~~y~ 602 (616)
..|.
T Consensus 643 ~~~~ 646 (670)
T 3ux8_A 643 ESHT 646 (670)
T ss_dssp TCHH
T ss_pred ccHH
Confidence 5543
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.8e-35 Score=334.30 Aligned_cols=209 Identities=26% Similarity=0.400 Sum_probs=163.8
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHH---------HHHHcCCCCC------CC------EEEECCEeCCCCCH---
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIA---------NLIERFYDPI------KG------KILLNGVPLVEISH--- 441 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~---------~lL~g~~~~~------~G------~I~idg~~i~~~~~--- 441 (616)
+.|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .+.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4555444333 23 35556555533221
Q ss_pred -------HHHh-------------------------------cccEEEccCCCcCC------------------------
Q 007152 442 -------EHLH-------------------------------RKISIVSQEPVLFN------------------------ 459 (616)
Q Consensus 442 -------~~~r-------------------------------~~i~~v~Q~~~lf~------------------------ 459 (616)
+.+| +..|+++|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 23577777766543
Q ss_pred ---------ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC--
Q 007152 460 ---------CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-- 528 (616)
Q Consensus 460 ---------~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p-- 528 (616)
.|+.||+.|... ....++..++++.+|+.. ..+|+.+.+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~-~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN-IPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT-CHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhc-chhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 478888887653 333455667777777632 2367888999999999999999999876
Q ss_pred -CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhcCCh
Q 007152 529 -RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGGV 600 (616)
Q Consensus 529 -~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~~~ 600 (616)
++|||||||++||+.+++.+++.|+++. +++|+|+|||+++.++.||+|++| ++|+|+++|+|+|+++..+.
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~s 906 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS 906 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCch
Confidence 7999999999999999999999998875 589999999999999999999999 89999999999999998777
Q ss_pred hHHHH
Q 007152 601 YTALV 605 (616)
Q Consensus 601 y~~l~ 605 (616)
|..-+
T Consensus 907 yt~~~ 911 (916)
T 3pih_A 907 YTGRF 911 (916)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=317.20 Aligned_cols=195 Identities=23% Similarity=0.327 Sum_probs=153.8
Q ss_pred eEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE-----------EECCEeCCCCCHH
Q 007152 374 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-----------LLNGVPLVEISHE 442 (616)
Q Consensus 374 ~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I-----------~idg~~i~~~~~~ 442 (616)
|++++|... ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 568899643 35788877 699999999999999999999999999999999998 3445444333333
Q ss_pred HHhcccE--EEccCCC----cCC---ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 443 HLHRKIS--IVSQEPV----LFN---CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 443 ~~r~~i~--~v~Q~~~----lf~---~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
.+.+.+. +.+|... .+. .++.+++.... ...++++.++++..++.+..++.+ .+||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgG 225 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--EKSPEDVKRYIKILQLENVLKRDI-----------EKLSGG 225 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--CSCHHHHHHHHHHHTCTGGGGSCT-----------TTCCHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--hhHHHHHHHHHHHcCCcchhCCCh-----------HHCCHH
Confidence 3444443 3333322 122 26778877653 345678999999998876654433 579999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 007152 514 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 584 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~-aD~Iivl~~G~ 584 (616)
||||++|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|.
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999998875 47899999999998765 99999998765
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-34 Score=317.72 Aligned_cols=194 Identities=20% Similarity=0.308 Sum_probs=153.4
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE-----------EECCEeCCCCCH
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-----------LLNGVPLVEISH 441 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I-----------~idg~~i~~~~~ 441 (616)
++++.+|.. +...|.++.. +++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 3 ~~~~~~~~~--~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKV--NGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESST--TSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCC--CceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 356788963 2234444432 45999999999999999999999999999999999 677876643322
Q ss_pred HHH------hcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHH
Q 007152 442 EHL------HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 515 (616)
Q Consensus 442 ~~~------r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQr 515 (616)
... ...+.+++|.+.++.+|+++++.... ..+++.++++..++.+..+ .. -.+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~~~~l~~l~l~~~~~-------~~----~~~LSgGe~ 144 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----ERGKKDEVKELLNMTNLWN-------KD----ANILSGGGL 144 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC----CSSCHHHHHHHTTCGGGTT-------SB----GGGCCHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch----hHHHHHHHHHHcCCchhhc-------CC----hhhCCHHHH
Confidence 222 22355667777788899999986532 2335678888888765432 22 346999999
Q ss_pred HHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh-hcCEEEEEeCCE
Q 007152 516 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGE 584 (616)
Q Consensus 516 QRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~-~aD~Iivl~~G~ 584 (616)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999999878999999999999875 499999998754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=3.6e-33 Score=318.02 Aligned_cols=216 Identities=22% Similarity=0.351 Sum_probs=160.8
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHH-HHcCC-------CC---------------
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANL-IERFY-------DP--------------- 424 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~l-L~g~~-------~~--------------- 424 (616)
..++++|+++ .+|+|+||+|++|+++||+|+||||||||++. |+|++ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999986 15999999999999999999999999999996 66543 22
Q ss_pred ---CCC-------EEEECCEeCCCCCH----------HHHhcccEEEcc---------C---------------------
Q 007152 425 ---IKG-------KILLNGVPLVEISH----------EHLHRKISIVSQ---------E--------------------- 454 (616)
Q Consensus 425 ---~~G-------~I~idg~~i~~~~~----------~~~r~~i~~v~Q---------~--------------------- 454 (616)
.+| .|.+||.++...+. +.+|+.++++|+ .
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 456 78999988864332 344544333332 1
Q ss_pred -CCcCC-------------------------ccHHHHHh--------cCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc
Q 007152 455 -PVLFN-------------------------CSIEENIA--------YGCDGKASSADIENAAKMANAHDFISNFPEKYQ 500 (616)
Q Consensus 455 -~~lf~-------------------------~TIreNi~--------~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~Gld 500 (616)
-.++. -||.||+. +... ....+++.++++..++...
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-~~~~~~~~~~L~~~gL~~~--------- 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-ESAIFRALDTLREVGLGYL--------- 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-SHHHHHHHHHHHHTTCTTS---------
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-chHHHHHHHHHHHcCCCcc---------
Confidence 11111 25555554 3321 1112233444444443221
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCE
Q 007152 501 TFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADT 576 (616)
Q Consensus 501 T~vge~G~~LSGGQrQRlalARAll~~---p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~ 576 (616)
.++....+||||||||++|||+|+++ |++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+
T Consensus 723 -~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 723 -RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp -BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred -cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 24666778999999999999999996 69999999999999999999999998874 68999999999999999999
Q ss_pred EEEE------eCCEEEEecChhHHhhcCChhH
Q 007152 577 VAVV------SDGEIVESGTHEELLSKGGVYT 602 (616)
Q Consensus 577 Iivl------~~G~Ive~G~~~eL~~~~~~y~ 602 (616)
|++| ++|+|++.|+++|+.+....|.
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t 833 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVT 833 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTCTTCSS
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhCchhHH
Confidence 9999 7999999999999987655443
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.98 E-value=1.4e-32 Score=295.79 Aligned_cols=201 Identities=18% Similarity=0.197 Sum_probs=157.2
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--------------------------------------CCCCE
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD--------------------------------------PIKGK 428 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~--------------------------------------~~~G~ 428 (616)
.+++++|++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999977664 45789
Q ss_pred EEECCEeCCCCCHHHHhcc-cEEEccCCCcCCccHHHHHhcCCCCCCCH-------------------------------
Q 007152 429 ILLNGVPLVEISHEHLHRK-ISIVSQEPVLFNCSIEENIAYGCDGKASS------------------------------- 476 (616)
Q Consensus 429 I~idg~~i~~~~~~~~r~~-i~~v~Q~~~lf~~TIreNi~~g~~~~~~~------------------------------- 476 (616)
+++||.+++..+..++++. +++++|++.++-.+..++..+-+. ....
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~-~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDR-RVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHH-HhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999987777888777 799999999988777766665432 1110
Q ss_pred -----------------------------------HHHHHHHHHcCchHH--HHc-------CCCcccc---cccCCCCC
Q 007152 477 -----------------------------------ADIENAAKMANAHDF--ISN-------FPEKYQT---FVGERGVR 509 (616)
Q Consensus 477 -----------------------------------~~i~~al~~a~l~~~--i~~-------Lp~GldT---~vge~G~~ 509 (616)
+++.+.++..++.+. -.. -+.|.+. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 111112222221110 000 0123333 34444444
Q ss_pred --------CChhHHHHHHHHHHHccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEE
Q 007152 510 --------LSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 510 --------LSGGQrQRlalARAll~~p--~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
||||||||++|||+++.+| ++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998788999999999999999999999
Q ss_pred E----eCCEEEEec
Q 007152 580 V----SDGEIVESG 589 (616)
Q Consensus 580 l----~~G~Ive~G 589 (616)
| ++|+++...
T Consensus 368 l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 368 VEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEETTEEEEEE
T ss_pred EEEeccCCceEEEE
Confidence 9 999987653
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.98 E-value=3.8e-32 Score=309.49 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=160.7
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH-cC----C---CCCCC------------
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-RF----Y---DPIKG------------ 427 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~-g~----~---~~~~G------------ 427 (616)
..++++|++. ..|+||||+|++|+++||+|+||||||||++.++ |. + .+..|
T Consensus 628 ~~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 628 RWLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp CEEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred eEEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 3588898852 2699999999999999999999999999999854 21 1 12233
Q ss_pred -EEEECCEeCCCCC---HH-------HHh---------cccEEEccCCCc---------------------C--------
Q 007152 428 -KILLNGVPLVEIS---HE-------HLH---------RKISIVSQEPVL---------------------F-------- 458 (616)
Q Consensus 428 -~I~idg~~i~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------f-------- 458 (616)
.|.+||.++..-+ +. ..| +.++|+||...+ |
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 4788988875321 11 122 346888885321 0
Q ss_pred --------------------------CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccc-cccCCCCCCC
Q 007152 459 --------------------------NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT-FVGERGVRLS 511 (616)
Q Consensus 459 --------------------------~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT-~vge~G~~LS 511 (616)
+-|+.||+.+... ....++..++++.. |+.. ..+....+||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~~~~~~~~~~L~~~-----------gL~~~~l~~~~~~LS 847 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-IPKIKRKLETLYDV-----------GLGYMKLGQPATTLS 847 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-CHHHHHHHHHHHHT-----------TCSSSBTTCCGGGCC
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-chhHHHHHHHHHHc-----------CCCcccccCchhhCC
Confidence 1256666665432 11112233333333 3333 3566677899
Q ss_pred hhHHHHHHHHHHHccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------e
Q 007152 512 GGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------S 581 (616)
Q Consensus 512 GGQrQRlalARAll~~p---~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~ 581 (616)
||||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++| +
T Consensus 848 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~ 927 (972)
T 2r6f_A 848 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDR 927 (972)
T ss_dssp HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTS
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCC
Confidence 99999999999999875 9999999999999999999999998875 589999999999999999999999 7
Q ss_pred CCEEEEecChhHHhhcCChhHH
Q 007152 582 DGEIVESGTHEELLSKGGVYTA 603 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~~~~y~~ 603 (616)
+|+|++.|+++++.+....|..
T Consensus 928 ~G~Iv~~g~~~el~~~~~~~t~ 949 (972)
T 2r6f_A 928 GGQIVAVGTPEEVAEVKESHTG 949 (972)
T ss_dssp CCSEEEEESHHHHHTCTTCHHH
T ss_pred CCEEEEecCHHHHHhCchhHHH
Confidence 8999999999999876655543
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5e-36 Score=323.13 Aligned_cols=192 Identities=11% Similarity=0.121 Sum_probs=154.1
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC-E-EEECCEeCCCCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-K-ILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~-I~idg~~i~~~~~~~~r~ 446 (616)
.++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 466777776662 69999999999999999999999999999999999999 9 99998 1 377
Q ss_pred ccEEEccCCCcCC----ccHHHHHhcCCCC--C-CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHH
Q 007152 447 KISIVSQEPVLFN----CSIEENIAYGCDG--K-ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 519 (616)
Q Consensus 447 ~i~~v~Q~~~lf~----~TIreNi~~g~~~--~-~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRla 519 (616)
.++|+||++.+|. .|++||+ ++... . ..++++.++++..| ++.... ..+||||||||++
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQLG 245 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHHH
Confidence 8999999996543 5999999 76321 0 11122333333333 333332 5789999999999
Q ss_pred HHHH--HccCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch------hh-hhcCE-----EEEE
Q 007152 520 IARA--LMMNPRI----LLLDE-ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS------TV-QSADT-----VAVV 580 (616)
Q Consensus 520 lARA--ll~~p~i----liLDE-pTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~------~l-~~aD~-----Iivl 580 (616)
|||| |+.+|++ +|||| |||+||+. .+.+.+.++++ ++|+|+|||+.+ .+ +.||+ |++|
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9999 9999999 99999 99999999 66666666654 789999999987 33 56999 9999
Q ss_pred e-CCEEEEecChhHHhh
Q 007152 581 S-DGEIVESGTHEELLS 596 (616)
Q Consensus 581 ~-~G~Ive~G~~~eL~~ 596 (616)
+ +|+|+ .|+++++.+
T Consensus 323 ~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCTTCC-CCCHHHHHH
T ss_pred eCCCcEE-ECCHHHHhh
Confidence 9 99999 999998854
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.5e-31 Score=305.77 Aligned_cols=218 Identities=24% Similarity=0.352 Sum_probs=160.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH-----cCCC---CCCCE-----------
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-----RFYD---PIKGK----------- 428 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~-----g~~~---~~~G~----------- 428 (616)
..++++|++. .+|+|+||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999852 2699999999999999999999999999999853 2222 23343
Q ss_pred --EEECCEeCCCCC---HH-------HHh---------cccEEEccCCCc---------------------C--------
Q 007152 429 --ILLNGVPLVEIS---HE-------HLH---------RKISIVSQEPVL---------------------F-------- 458 (616)
Q Consensus 429 --I~idg~~i~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------f-------- 458 (616)
|.+|+.++...+ +. .+| +..+|+||...+ |
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 566666663221 11 122 346788875321 0
Q ss_pred --------------------------CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccc-cccCCCCCCC
Q 007152 459 --------------------------NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT-FVGERGVRLS 511 (616)
Q Consensus 459 --------------------------~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT-~vge~G~~LS 511 (616)
+-|+.||+.+... ....++..++++..+ +.. ..+....+||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~~~~~~~~~~L~~lg-----------L~~~~l~~~~~~LS 865 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-IAGVHRYLRTLVDVG-----------LGYVRLGQPAPTLS 865 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-CHHHHHHHHHHHHTT-----------GGGSBTTCCGGGSC
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-chHHHHHHHHHHHcC-----------CCcccccCccccCC
Confidence 1245566655422 111122333444433 333 4566678999
Q ss_pred hhHHHHHHHHHHHccCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------e
Q 007152 512 GGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------S 581 (616)
Q Consensus 512 GGQrQRlalARAll~~p---~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~ 581 (616)
||||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+|++| +
T Consensus 866 GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~ 945 (993)
T 2ygr_A 866 GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAG 945 (993)
T ss_dssp HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTS
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCC
Confidence 99999999999999875 9999999999999999999999998874 689999999999999999999999 6
Q ss_pred CCEEEEecChhHHhhcCChhHHHH
Q 007152 582 DGEIVESGTHEELLSKGGVYTALV 605 (616)
Q Consensus 582 ~G~Ive~G~~~eL~~~~~~y~~l~ 605 (616)
+|+|++.|+++++.+....|...+
T Consensus 946 ~G~Iv~~G~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 946 GGTVVAQGTPEDVAAVPASYTGKF 969 (993)
T ss_dssp CSEEEEEECHHHHHHCTTCHHHHH
T ss_pred CCEEEEecCHHHHHhCCHHHHHHH
Confidence 899999999999988766665443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=2.4e-29 Score=260.98 Aligned_cols=202 Identities=19% Similarity=0.223 Sum_probs=146.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----------------------------------------------
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFY----------------------------------------------- 422 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~----------------------------------------------- 422 (616)
++++++.+| .++|+|+||||||||+++|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578888899 99999999999999999998543
Q ss_pred ---CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC-CccHHHHHhcCCCCCC---------------CHHHHHHHH
Q 007152 423 ---DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKA---------------SSADIENAA 483 (616)
Q Consensus 423 ---~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf-~~TIreNi~~g~~~~~---------------~~~~i~~al 483 (616)
.+.+|.+++||.+++..+...+.+.+++.||+..++ .|++.+|+... |.+- +.+++.+.+
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578999999986555677777899999998866 89999999764 3110 001122221
Q ss_pred HHc------------Cch-HHHHcCCCcccccccC------CCCCCChhHHHHHHHHHHHc----cCCCEEEEeCcCCCC
Q 007152 484 KMA------------NAH-DFISNFPEKYQTFVGE------RGVRLSGGQKQRVAIARALM----MNPRILLLDEATSAL 540 (616)
Q Consensus 484 ~~a------------~l~-~~i~~Lp~GldT~vge------~G~~LSGGQrQRlalARAll----~~p~iliLDEpTSaL 540 (616)
... .+. +....++.|+++.++. ....||||||||++|||||. ++|+++|||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 000 1113456677776542 34689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEE--EEEeCCEE-EEecChhH
Q 007152 541 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTV--AVVSDGEI-VESGTHEE 593 (616)
Q Consensus 541 D~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~I--ivl~~G~I-ve~G~~~e 593 (616)
|+.+.+.+.+.|+++.+++|+|+|||+.+.++.||++ ++|++|+. +....-+|
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999887788999999999888999987 88888865 33444444
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=6.4e-31 Score=254.42 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=103.1
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
+++|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.++||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3689985 89999999999999999999999999 99999994 333321 2234678899999998 66
Q ss_pred HH-hcCCC------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcC
Q 007152 465 NI-AYGCD------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 537 (616)
Q Consensus 465 Ni-~~g~~------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpT 537 (616)
|+ .++.+ ....++++.+++ +. |+ |||||++|||||+.+|++|||||||
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~l---------~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKLM---------EA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHHH---------HT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHH---------Hh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 76 44211 001111222222 21 21 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 538 SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 538 SaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
|+ +.+.+.+.|+++.+++|+| |||+++.++ ++...+||..
T Consensus 133 s~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 133 NT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp GC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 99 8888999998774578888 999987554 4455566653
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=7e-31 Score=257.01 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=124.0
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-HHHhcccEEEccCCCcCC-----
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH-EHLHRKISIVSQEPVLFN----- 459 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~-~~~r~~i~~v~Q~~~lf~----- 459 (616)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3599999999999999999999999999999999999 6 99999 887754432 345678999999886653
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH-----HHHHccCC
Q 007152 460 ------CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI-----ARALMMNP 528 (616)
Q Consensus 460 ------~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal-----ARAll~~p 528 (616)
+|+++| .+|. .++++.++++.... ..+. .+|||||+||++| ||+|+++|
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~ 146 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPP 146 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECS
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCc
Confidence 445555 4442 24556666665332 1121 5799999999999 99999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 529 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 529 ~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
++++|||||+++|.+++..+.+.+.+..+++| ++| ++.||.|+++++
T Consensus 147 ~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 147 STDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp CHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999999988776777 678 578999988865
No 70
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.94 E-value=1.8e-31 Score=276.84 Aligned_cols=206 Identities=17% Similarity=0.190 Sum_probs=147.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC-CCCCCcEE---------E
Q 007152 304 SMTPGALTSFILYSLTVGSSVSGLSS-LYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPL-GDQDGEVE---------L 372 (616)
Q Consensus 304 ~~s~g~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~I~---------~ 372 (616)
.+|.|.+.+++.+......| .+.. ....+..+..+..|+..+++.|... ........ ......++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999988877766554 2222 2222222333445666666433211 10000000 00112355 6
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS 452 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~ 452 (616)
++++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 67777 6 258999999999999999999999999999999999999999999999975 333333455555543
Q ss_pred cCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007152 453 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILL 532 (616)
Q Consensus 453 Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ili 532 (616)
| |||+||++|||||..+|++++
T Consensus 224 ------------------------------------------------------g----gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 224 ------------------------------------------------------G----GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp ------------------------------------------------------B----TTBCHHHHHHHHTTSCCSEEE
T ss_pred ------------------------------------------------------C----CChhHHHHHHHHhhhCCCEEE
Confidence 0 899999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHhCCC-eEEEEecCchhhhhcCEEEEEeCCEE
Q 007152 533 LDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQSADTVAVVSDGEI 585 (616)
Q Consensus 533 LDEpTSaLD~~te~~i~~~l~~~~~~~-T~I~ItHrl~~l~~aD~Iivl~~G~I 585 (616)
|||||+. + +.+.++.+..++ |+|+++|+++..+.|||+++|++|+.
T Consensus 246 ldE~~~~---e----~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS---E----AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST---H----HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH---H----HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999992 2 445566655555 79999999999999999999998863
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=4.6e-28 Score=227.81 Aligned_cols=149 Identities=15% Similarity=0.172 Sum_probs=107.9
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCC--cCCccHHHHHh
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPV--LFNCSIEENIA 467 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~--lf~~TIreNi~ 467 (616)
|+||++++|++++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2222 2334444 67788763 22333333221
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHH--
Q 007152 468 YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE-- 545 (616)
Q Consensus 468 ~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te-- 545 (616)
... ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 -------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 -------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp -------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred -------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 111 111223555555443 34599999999999999999999999999999999955
Q ss_pred --------------HHHHHHHHHHh-CCCeEEEEecCchhhhhcCEE
Q 007152 546 --------------YLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV 577 (616)
Q Consensus 546 --------------~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~I 577 (616)
+.+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777765543 489999999999999888775
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=3.1e-26 Score=241.02 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=75.8
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEE
Q 007152 506 RGVRLSGGQKQRVAIARALM------MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVA 578 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARAll------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Ii 578 (616)
...+||||||||++|||||. .+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++..+.||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999998875 5799999999999999999999
Q ss_pred EEeCCEEEE
Q 007152 579 VVSDGEIVE 587 (616)
Q Consensus 579 vl~~G~Ive 587 (616)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=2.1e-28 Score=231.20 Aligned_cols=147 Identities=17% Similarity=0.221 Sum_probs=110.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 479 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i 479 (616)
+++|+||||||||||+++|+|++. |.++|.+..+......++.++|++|++ |..+|+ ++.- .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-~------ 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-F------ 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET-T------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh-c------
Confidence 689999999999999999999995 677887765443335678999999987 333343 1110 0
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH-----HccCCCEEEEeC--cCCCCCHHHHHHHHHHH
Q 007152 480 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA-----LMMNPRILLLDE--ATSALDAESEYLVQDAM 552 (616)
Q Consensus 480 ~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA-----ll~~p~iliLDE--pTSaLD~~te~~i~~~l 552 (616)
.+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+.+.+.+.+.+
T Consensus 64 ---------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l 126 (178)
T 1ye8_A 64 ---------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM 126 (178)
T ss_dssp ---------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH
T ss_pred ---------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH
Confidence 00 0145677788999999999999996 999999999999 99999999999999988
Q ss_pred HHHhCCCeEEEEec---Cchhhhh-cCEEEEEeCCEEEE
Q 007152 553 DSLMKGRTVLVIAH---RLSTVQS-ADTVAVVSDGEIVE 587 (616)
Q Consensus 553 ~~~~~~~T~I~ItH---rl~~l~~-aD~Iivl~~G~Ive 587 (616)
++ .+.|+|+++| +...++. ||+ ++|+|++
T Consensus 127 ~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 127 HD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred hc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 66 4677999996 5555543 676 6677776
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=1.3e-27 Score=252.98 Aligned_cols=168 Identities=17% Similarity=0.200 Sum_probs=136.4
Q ss_pred CcceeceeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHH
Q 007152 385 HMVLKGITLKLLSGS--------------------KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 385 ~~vL~~isl~I~~G~--------------------~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~ 444 (616)
+.+|++|||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997753
Q ss_pred hcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh--HHHHHHHHH
Q 007152 445 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG--QKQRVAIAR 522 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG--QrQRlalAR 522 (616)
| .++++|++...+-|+.||+.++.+ ++++.++++..++.+. +..+ .|||| |+||++|||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAK 169 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHH
Confidence 2 288999986557899999988743 2346777777776542 2222 28999 999999999
Q ss_pred HHcc----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh------C----CCeEEEEecCchh--hhh-cCEEE
Q 007152 523 ALMM----------NPRILLLDEATSALDAESEYLVQDAMDSLM------K----GRTVLVIAHRLST--VQS-ADTVA 578 (616)
Q Consensus 523 All~----------~p~iliLDEpTSaLD~~te~~i~~~l~~~~------~----~~T~I~ItHrl~~--l~~-aD~Ii 578 (616)
|+.+ +|++++|||||++||+.+++.+.+.|+++. . ..++++.||.++. ++. ||+|.
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999 999999999999999999999998887763 1 2567778998875 544 77774
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=1.1e-27 Score=256.83 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=158.3
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCE---eCCCCC----
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV---PLVEIS---- 440 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~---~i~~~~---- 440 (616)
..++++|+++.|+. ...+|+++ |+|++|++++|+|+||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 24699999 999999999999999999999999999999999999999998 554432
Q ss_pred -HHHHhcccEEEccC-CC-cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 441 -HEHLHRKISIVSQE-PV-LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 441 -~~~~r~~i~~v~Q~-~~-lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
...+++.++||+|+ .. ...-|+.+|+.+.. ++... +......++ +...+||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~~-~~~~v~~~l------------d~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFRD-RGQHVLLIM------------DSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHHT-TTCEEEEEE------------ECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHHh-CCCCHHHHH------------HhHHHHHHHH-HH
Confidence 45688899999995 33 44679999998742 11110 111111111 2256799999 99
Q ss_pred HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC-----CC-----eEEEEecCchhhhhcCEEEEEeCCEEEE
Q 007152 518 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-----GR-----TVLVIAHRLSTVQSADTVAVVSDGEIVE 587 (616)
Q Consensus 518 lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~-----~~-----T~I~ItHrl~~l~~aD~Iivl~~G~Ive 587 (616)
++|| +++|++ |++||+.+...+.+.+.++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988754 43 9999999999 78899999999999999
Q ss_pred ecChhHHhh
Q 007152 588 SGTHEELLS 596 (616)
Q Consensus 588 ~G~~~eL~~ 596 (616)
.|++.++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999988754
No 76
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.90 E-value=5.1e-24 Score=242.88 Aligned_cols=96 Identities=29% Similarity=0.413 Sum_probs=88.2
Q ss_pred ccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEE
Q 007152 503 VGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 503 vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
.+..-.+||||||||++|||||.++|+ +|||||||++||+...+.+.+.|+++. .+.|+|+|+||++.++.||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 455567899999999999999999994 999999999999999999999998876 48999999999999999999999
Q ss_pred E------eCCEEEEecChhHHhhcC
Q 007152 580 V------SDGEIVESGTHEELLSKG 598 (616)
Q Consensus 580 l------~~G~Ive~G~~~eL~~~~ 598 (616)
| ++|+++..|+++++.+..
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred eCCCcccCCCEEEEecCHHHHHhch
Confidence 9 799999999999998753
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=3.2e-27 Score=242.57 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhcccCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcceeceeEE-----------------------
Q 007152 338 AGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLK----------------------- 394 (616)
Q Consensus 338 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~----------------------- 394 (616)
..++.++.+....+.+..+ ....+...+.|+++||++.|. |+++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~---~~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEE---LVGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHH---HHTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHHH---HHhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 3455566555544322111 111223345799999999993 577877765
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC----
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC---- 470 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~---- 470 (616)
+++|+++||+|+||||||||+++|+|+++|..|. +.+++|+||+++++.|++||+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~ 149 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGF 149 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCC
Confidence 8999999999999999999999999999998663 4799999999999999999998632
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCccc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHH
Q 007152 471 DGKASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 549 (616)
Q Consensus 471 ~~~~~~~~i~~al~~a~l~~~i~~Lp~Gld-T~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~ 549 (616)
|...+.+.+.+.++.. ..|.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+..
T Consensus 150 ~~~~d~~~~~~~L~~l---------~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~----- 211 (312)
T 3aez_A 150 PESYNRRALMRFVTSV---------KSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT----- 211 (312)
T ss_dssp GGGBCHHHHHHHHHHH---------HTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----
T ss_pred ChHHHHHHHHHHHHHh---------CCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----
Confidence 3222334455444433 23432 333 4699999999999999999999999999999998632
Q ss_pred HHHHHHhCCCeEEEEecCchhh--hhcCEEEEEeCCE
Q 007152 550 DAMDSLMKGRTVLVIAHRLSTV--QSADTVAVVSDGE 584 (616)
Q Consensus 550 ~~l~~~~~~~T~I~ItHrl~~l--~~aD~Iivl~~G~ 584 (616)
..+.+.. ..+|+|+|..+.. +..+|.+.+.+|+
T Consensus 212 ~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 1233332 3568888887653 3356655555543
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=3.6e-25 Score=226.27 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=128.2
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHH--hcccEEEccCCC-cCC-c
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHL--HRKISIVSQEPV-LFN-C 460 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 460 (616)
+++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...| |..++|++|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578899999999999999999999999999999999999999999886543 2344 457999999997 664 5
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCC
Q 007152 461 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATS 538 (616)
Q Consensus 461 TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTS 538 (616)
|++||+.++.....+ ...++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d----~~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD----VVLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCS----EEEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCc----chHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 999999875211111 011222222111 12222 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEec---------Cchhh-hhcCEEEEEeCCEEE
Q 007152 539 ALDAESEYLVQDAMDSLMKGRTVLVIAH---------RLSTV-QSADTVAVVSDGEIV 586 (616)
Q Consensus 539 aLD~~te~~i~~~l~~~~~~~T~I~ItH---------rl~~l-~~aD~Iivl~~G~Iv 586 (616)
++|+.+.. +.+.+ ..+.|+|++|| .++.+ +..+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 23322 24789999999 34444 346899999999753
No 79
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.89 E-value=4.2e-26 Score=213.37 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=89.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEeCCCCC---HHHHh-cccE----EEccCCCcCCccHHHHHh
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVPLVEIS---HEHLH-RKIS----IVSQEPVLFNCSIEENIA 467 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~TIreNi~ 467 (616)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 67888 5788 899999988 221
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHc-CCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q 007152 468 YGCDGKASSADIENAAKMANAHDFISN-FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRIL 531 (616)
Q Consensus 468 ~g~~~~~~~~~i~~al~~a~l~~~i~~-Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~il 531 (616)
+ ++ +. .+++++++.. +| |+||.|+|+ |||||||||+||||++++|++.
T Consensus 77 -~-----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 12 22 7899999999 99 999999995 9999999999999999999874
No 80
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=1.7e-25 Score=225.25 Aligned_cols=148 Identities=16% Similarity=0.142 Sum_probs=97.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHHHHHhcCCCCC--CCH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENIAYGCDGK--ASS 476 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIreNi~~g~~~~--~~~ 476 (616)
.++||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.++|++|++.++.. |+.||+.||.... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3456789999999998865 9999999986411 112
Q ss_pred HHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 007152 477 ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 477 ~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~ 556 (616)
+.+.+.+. .++-+.++ ..||||||||+++|||+.. +++|||||++||+.. ..+++.+ .
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L---~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHL---S 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHH---H
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHH---H
Confidence 33444333 23333322 3699999999999999876 999999999999986 3333444 3
Q ss_pred CCCeEEEEecCchhhh
Q 007152 557 KGRTVLVIAHRLSTVQ 572 (616)
Q Consensus 557 ~~~T~I~ItHrl~~l~ 572 (616)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999988664
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=4.1e-23 Score=215.28 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEE
Q 007152 509 RLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 509 ~LSGGQrQRlalARAll---------~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
.|||||+||++|||+|. .+|||||||||||+||+...+.+.+.+.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998863 89999999 444 8999999
Q ss_pred EeCCEEEEecChhHHh
Q 007152 580 VSDGEIVESGTHEELL 595 (616)
Q Consensus 580 l~~G~Ive~G~~~eL~ 595 (616)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=3.6e-24 Score=222.81 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=128.7
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHH--hcccEEEccCCC-cC-Ccc
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHL--HRKISIVSQEPV-LF-NCS 461 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~----~~~~--r~~i~~v~Q~~~-lf-~~T 461 (616)
.+||++++|++++|||+|||||||+++.|+|+++|++|+|.++|.|+.... ...| |..++|++|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578889999999999999999999999999999999999999999886542 2333 467999999987 65 469
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCCC
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSA 539 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTSa 539 (616)
++||+.++.....+ ...++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 229 v~e~l~~~~~~~~d----~~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 229 LSKAVKRGKEEGYD----VVLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHTTCS----EEEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHhCCCH----HHHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 99999875311111 011222222111 11222 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEec---------Cchhh-hhcCEEEEEeCCEE
Q 007152 540 LDAESEYLVQDAMDSLMKGRTVLVIAH---------RLSTV-QSADTVAVVSDGEI 585 (616)
Q Consensus 540 LD~~te~~i~~~l~~~~~~~T~I~ItH---------rl~~l-~~aD~Iivl~~G~I 585 (616)
+|+.+.. +.+.+ ..+.|+|++|| .++.. ...+.|.++..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22322 23789999999 34444 34689999999974
No 83
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.87 E-value=4.6e-26 Score=228.27 Aligned_cols=183 Identities=20% Similarity=0.199 Sum_probs=150.7
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHHhccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHLHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-~G~I~idg~~i~~~~~~~~r~~i 448 (616)
++++|++|. ++|+++| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 456666642 4899999 9999999999999999999999999999998 999999998886543 4457
Q ss_pred EEEcc-----CCCcCCccHHHHHhcCCCCCC-------CHHHHHHHHHHcCc-----------------hHHH-------
Q 007152 449 SIVSQ-----EPVLFNCSIEENIAYGCDGKA-------SSADIENAAKMANA-----------------HDFI------- 492 (616)
Q Consensus 449 ~~v~Q-----~~~lf~~TIreNi~~g~~~~~-------~~~~i~~al~~a~l-----------------~~~i------- 492 (616)
++++| ++..|..+|+.++.. +| +. +.+.++++++.+.- +..+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~-~p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~ 150 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRE-DP-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQ 150 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHH-CC-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGG
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhh-CC-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccc
Confidence 78888 667788899999987 45 33 66667776665421 1111
Q ss_pred -----HcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHHh
Q 007152 493 -----SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI--LLLDEATSALDAES---------EYLVQDAMDSLM 556 (616)
Q Consensus 493 -----~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~i--liLDEpTSaLD~~t---------e~~i~~~l~~~~ 556 (616)
..+++++++.|++++..+||| ||+++||+++.+|++ +|+||+||++|... +..+.++++...
T Consensus 151 ~~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 228 (261)
T 2eyu_A 151 QEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK 228 (261)
T ss_dssp HHHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH
T ss_pred cchHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH
Confidence 135678999999999999999 999999999999999 99999999999873 456788888888
Q ss_pred CCCeEEEEecCch
Q 007152 557 KGRTVLVIAHRLS 569 (616)
Q Consensus 557 ~~~T~I~ItHrl~ 569 (616)
+|+|.+.++||++
T Consensus 229 ~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 229 QGLITLEDAMEAS 241 (261)
T ss_dssp TTSSCHHHHHHHC
T ss_pred cCCCCHHHHHHHh
Confidence 9999999999986
No 84
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.86 E-value=6.9e-26 Score=238.67 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=146.9
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHHhcccEEEcc-----CCCcCC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHLHRKISIVSQ-----EPVLFN 459 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-~G~I~idg~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 459 (616)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3567765 7899999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHcCch-----------------HHH------------HcCCCcccccc
Q 007152 460 CSIEENIAYGCDGKA-------SSADIENAAKMANAH-----------------DFI------------SNFPEKYQTFV 503 (616)
Q Consensus 460 ~TIreNi~~g~~~~~-------~~~~i~~al~~a~l~-----------------~~i------------~~Lp~GldT~v 503 (616)
++|++|+++ +| +. +++.++.+++.++.. ..+ ..+|+++++.|
T Consensus 200 ~~l~~~L~~-~p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv 277 (372)
T 2ewv_A 200 DALRAALRE-DP-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGII 277 (372)
T ss_dssp HHHHHHTTS-CC-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEE
T ss_pred HHHHHHhhh-Cc-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEE
Confidence 999999998 45 44 777788888877532 111 12467999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCE--EEEeCcCCCCCHH----H-----HHHHHHHHHHHhCCCeEEEEecCchh
Q 007152 504 GERGVRLSGGQKQRVAIARALMMNPRI--LLLDEATSALDAE----S-----EYLVQDAMDSLMKGRTVLVIAHRLST 570 (616)
Q Consensus 504 ge~G~~LSGGQrQRlalARAll~~p~i--liLDEpTSaLD~~----t-----e~~i~~~l~~~~~~~T~I~ItHrl~~ 570 (616)
++++..+||| ||+++||+++.+|++ +|+||+||+||.. + +..+.++++...+|+|.+.++||++.
T Consensus 278 ~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 278 SQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999999999 999999999999999 9999999999975 3 44577777777889999999999974
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=3.7e-24 Score=203.74 Aligned_cols=159 Identities=16% Similarity=0.211 Sum_probs=122.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHH
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSA 477 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~ 477 (616)
|++++|+||||||||||+++|+|+++ ++| |.+||.+..++. .++++++|++|+. +++ ++|+.... ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~---~~~- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG---LEP- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC---CCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc---ccC-
Confidence 78999999999999999999999999 999 999999987654 5789999999986 443 33332110 000
Q ss_pred HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH-HHHH---HHccCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 007152 478 DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV-AIAR---ALMMNPRILLLDE--ATSALDAESEYLVQDA 551 (616)
Q Consensus 478 ~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl-alAR---All~~p~iliLDE--pTSaLD~~te~~i~~~ 551 (616)
. +...+..+|+.|..+|||||+++ +++| |+.++|+++|||| ||..+|+...+.+.+.
T Consensus 69 -----------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 69 -----------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp -----------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred -----------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 0 11133478999999999999999 5566 7899999999999 8988999877777666
Q ss_pred HHHHhCCCeEEE--E--ecCchhhhhcCEEEEEeCCEEEEec
Q 007152 552 MDSLMKGRTVLV--I--AHRLSTVQSADTVAVVSDGEIVESG 589 (616)
Q Consensus 552 l~~~~~~~T~I~--I--tHrl~~l~~aD~Iivl~~G~Ive~G 589 (616)
+.+ .+|+|+ + +||.+ ...+|+|..+++|+|++-.
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 642 456554 3 49886 6778999999999998753
No 86
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.86 E-value=2.3e-25 Score=214.47 Aligned_cols=169 Identities=17% Similarity=0.226 Sum_probs=133.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCC-------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCcc
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYD-------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCS 461 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-------------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~T 461 (616)
+++|+.++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88898 599999999999999886 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH-HHccCCCEEEEeCcCCCC
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR-ALMMNPRILLLDEATSAL 540 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR-All~~p~iliLDEpTSaL 540 (616)
+++|+ +|. ++++++++++.....-+ +-.|+|+++.... ++ .|| +++++|++++|||+|+++
T Consensus 76 ~~~n~-~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~ 137 (198)
T 1lvg_A 76 FSGNL-YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLR 137 (198)
T ss_dssp ETTEE-EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHH
T ss_pred ecCcc-CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhc
Confidence 99998 763 57889999986433222 3357788876532 22 677 899999999999999999
Q ss_pred CHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 007152 541 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 541 D~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
|.++|+.|.+.|.+..++ +.++| ++ ..+|+|+++++ -..++++|.+
T Consensus 138 d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 138 NTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp TCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 999999999999876544 35678 44 88999999875 2345556543
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=1.2e-24 Score=210.93 Aligned_cols=169 Identities=16% Similarity=0.157 Sum_probs=109.8
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHH
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIE 463 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIr 463 (616)
.++++| .+|++|++++|+||||||||||+++|+|++++ |.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 478888 79999999999999999999999999999963 44443211111112246789999999988753 666
Q ss_pred HHHhc-----CC--CCCCCHHHHHHHHH----------HcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 464 ENIAY-----GC--DGKASSADIENAAK----------MANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 464 eNi~~-----g~--~~~~~~~~i~~al~----------~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+|+.. ++ ....+.+++.+.++ ..++.++....|. .|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 66532 10 00112334444333 2333333333332 234 8999
Q ss_pred CCCEEEEeCcCCCC----CHHHHHHHHHHHHHHh--CCCeEEEEecCchhhh-hcCEEEEEe
Q 007152 527 NPRILLLDEATSAL----DAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVS 581 (616)
Q Consensus 527 ~p~iliLDEpTSaL----D~~te~~i~~~l~~~~--~~~T~I~ItHrl~~l~-~aD~Iivl~ 581 (616)
+|++++|||||+++ |+.+.+.+.+.++++. .+.|+|+|||+++.+. .||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6778889999888774 3789999999999765 699999984
No 88
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.85 E-value=3.3e-23 Score=215.58 Aligned_cols=194 Identities=17% Similarity=0.181 Sum_probs=149.0
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC-------CCH
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE-------ISH 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~-------~~~ 441 (616)
.++.+++++.|+. ...+|+++ |+|++||+++|+|+||||||||+++|+|+++|+.|.|.++|.+.++ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 5788999999963 34699999 9999999999999999999999999999999999999999865211 122
Q ss_pred HHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccc-cCCCCCCChhHHHHHHH
Q 007152 442 EHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV-GERGVRLSGGQKQRVAI 520 (616)
Q Consensus 442 ~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~v-ge~G~~LSGGQrQRlal 520 (616)
..+++.+.+++|... ...+++..+.....+.++... .|.+..+ -+.-.+||+|| ||+++
T Consensus 122 ~~~~~~v~~~~~~~~-----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHTTEEEEEECTTS-----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhceEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 334445566665321 123455555555555555333 2333211 13456899999 99999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh---CCC-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM---KGR-----TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~---~~~-----T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~ 592 (616)
| +.+|++ |+++|+.....+.+.+++.. +|. |++++||+++ -..||+++++.+|+|+..|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998775 366 8999999999 6779999999999999999877
Q ss_pred HHh
Q 007152 593 ELL 595 (616)
Q Consensus 593 eL~ 595 (616)
|+.
T Consensus 252 ~~~ 254 (347)
T 2obl_A 252 EEN 254 (347)
T ss_dssp TTT
T ss_pred HcC
Confidence 763
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=4e-22 Score=229.10 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=119.1
Q ss_pred HHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcC
Q 007152 416 NLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF 495 (616)
Q Consensus 416 ~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~L 495 (616)
.|..+.+.|..|+|+++|.++.++....+.+.++++.+-. -+..++. .-.++.+..+. ..+++..+
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~~~----l~~~~~~--------~~~~~~~~~~~--~~~~L~~v 451 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKNLN----LTERERE--------IVGELLKEIEK--RLEFLVDV 451 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHSCC----CCTTTTT--------THHHHHHHHHH--HHHHHHTT
T ss_pred hcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHhcc----CcHHHHH--------HHHhhHHHHHH--HHHHHHHc
Confidence 4445668999999999999986654444444444422211 0111110 00111111111 01233322
Q ss_pred CCccccc-ccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh
Q 007152 496 PEKYQTF-VGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV 571 (616)
Q Consensus 496 p~GldT~-vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l 571 (616)
|++.. ......+|||||+||++|||||..+|+ +|||||||++||+...+.+.+.|+++. .|+|+|+|||+++.+
T Consensus 452 --gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~ 529 (916)
T 3pih_A 452 --GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVI 529 (916)
T ss_dssp --TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHH
T ss_pred --CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 33322 345566899999999999999999887 999999999999999999999999886 489999999999999
Q ss_pred hhcCEEEEE------eCCEEEEecChhHHhhcC
Q 007152 572 QSADTVAVV------SDGEIVESGTHEELLSKG 598 (616)
Q Consensus 572 ~~aD~Iivl------~~G~Ive~G~~~eL~~~~ 598 (616)
+.||+|++| ++|+|++.|+++|+++..
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 999999999 899999999999998764
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=1.8e-21 Score=199.35 Aligned_cols=181 Identities=16% Similarity=0.138 Sum_probs=125.5
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC-EEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
++|+++++.+++|+.++|+|+||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999888 77665433 3566777776666655432 3345
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH-HHHHHHHHHHccCCCEEEEeCcCC---C-
Q 007152 465 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ-KQRVAIARALMMNPRILLLDEATS---A- 539 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ-rQRlalARAll~~p~iliLDEpTS---a- 539 (616)
|+..+. .++++..++++. .+...+-+ +.+....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~---~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 97 SLKREI---IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHHH---HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred ccccCC---CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 555431 223344443332 12222212 222224689999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHHHh--CCCeEEEEecCc--h--------------------hh-hhcCEEEEEeCCEE
Q 007152 540 --LDA-ESEYLVQDAMDSLM--KGRTVLVIAHRL--S--------------------TV-QSADTVAVVSDGEI 585 (616)
Q Consensus 540 --LD~-~te~~i~~~l~~~~--~~~T~I~ItHrl--~--------------------~l-~~aD~Iivl~~G~I 585 (616)
+|. .....+.+.|+++. .++|+|++||.. + .+ ..||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 45567888887764 389999999995 3 34 46999999998875
No 91
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.83 E-value=2.1e-25 Score=234.30 Aligned_cols=223 Identities=11% Similarity=-0.019 Sum_probs=156.0
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC-CCCCCcE
Q 007152 293 VIYGANLTIT-GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPL-GDQDGEV 370 (616)
Q Consensus 293 ~~~g~~~v~~-g~~s~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~I 370 (616)
.+.|++.+.. |.+|.|.+.++..+...+..| .+......+..+..+..|+..++ +++.+........ ....+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3446665665 889999999999888777655 23333333333344456777666 2221111000000 0011235
Q ss_pred ---------EEEeEEEE---CCCCCCCcce---------eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 371 ---------ELDDVWFA---YPSRPNHMVL---------KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 371 ---------~~~~vsf~---Y~~~~~~~vL---------~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
+|+||+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 89999999 8632 23455 99999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcccEEEc-cCCCc---CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 007152 430 LLNGVPLVEISHEHLHRKISIVS-QEPVL---FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 505 (616)
Q Consensus 430 ~idg~~i~~~~~~~~r~~i~~v~-Q~~~l---f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge 505 (616)
.++|. .++....+|+.+++++ |++.+ +..|+++||.++.. ...+..+...++.+.+.++++.+|.|++|.+++
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t 283 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSITS 283 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEE
Confidence 99985 4566666788999999 99886 88999999999864 333333444445566778999999999999999
Q ss_pred CCCCCChhHHHHHHHHHH
Q 007152 506 RGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 506 ~G~~LSGGQrQRlalARA 523 (616)
-+.+-+.+..+|+.....
T Consensus 284 ~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 284 CHAGSCELTFERLALMVL 301 (361)
T ss_dssp EECSSHHHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHHh
Confidence 888888999999987754
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.83 E-value=6.1e-23 Score=226.65 Aligned_cols=167 Identities=13% Similarity=0.060 Sum_probs=119.8
Q ss_pred CcceeceeE-EEeCCCEEEEECCCCCcHHHHHHH--HHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCcc
Q 007152 385 HMVLKGITL-KLLSGSKIALVGPSGGGKSTIANL--IERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCS 461 (616)
Q Consensus 385 ~~vL~~isl-~I~~G~~vaIvG~sGsGKSTL~~l--L~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~T 461 (616)
.++|+++|| .|++|++++|+||||||||||+++ +.|+++|.+|.|+++|.+. .......++.++|++|++...
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT---
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc---
Confidence 479999999 999999999999999999999999 7899999999999999873 223345567899999997632
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCC--
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA-- 539 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSa-- 539 (616)
+|+.+..... . ++.+++++..++.+.....| ..|||| +|++++|||||+.
T Consensus 101 --~~l~~~~~~~-~-~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 --GKLFILDASP-D-PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp --TSEEEEECCC-C-SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTST
T ss_pred --CcEEEEecCc-c-cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHH
Confidence 2232221101 0 00111111222222222111 234554 5889999999984
Q ss_pred ---CCHHHHHHHHHHHHHHh-CCCeEEEEecCchhh---------hh-cCEEEEEeCC
Q 007152 540 ---LDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV---------QS-ADTVAVVSDG 583 (616)
Q Consensus 540 ---LD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l---------~~-aD~Iivl~~G 583 (616)
+|+...+.+.+.++.+. .++|+|+|||+++.+ +. ||+|++|++|
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 58899999998887764 489999999999874 45 9999999983
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.83 E-value=1.9e-23 Score=203.07 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=113.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc---cHHHHHhc--
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC---SIEENIAY-- 468 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~---TIreNi~~-- 468 (616)
..++|+++||+|+||||||||+++|+|++.| .++|++||+++++. |+++|+.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999999875 58999999998854 57676554
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCC-------CC
Q 007152 469 GCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA-------LD 541 (616)
Q Consensus 469 g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSa-------LD 541 (616)
+.+...+.+++.++++..++.+.+.. | +++...|+++. |+||+++||+++.+|+++++||||++ ||
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred CChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 33333456778888887776655443 3 33333333221 46899999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH--hCCCeEEEEecCc
Q 007152 542 AESEYLVQDAMDSL--MKGRTVLVIAHRL 568 (616)
Q Consensus 542 ~~te~~i~~~l~~~--~~~~T~I~ItHrl 568 (616)
+.++..+.+.+.+. .+++|++.++|+.
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998764 3589999999984
No 94
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=2.7e-20 Score=205.08 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=71.4
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCC
Q 007152 508 VRL-SGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 583 (616)
Q Consensus 508 ~~L-SGGQrQRlalARAll~~p--~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G 583 (616)
..| ||||+||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 356 999999999999999999 9999999999999999999999999887789999999999999999999999554
No 95
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.83 E-value=6.8e-23 Score=216.14 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=109.3
Q ss_pred ceeceeEEEeC--CCEEEEECCCCCcHHHHHHHHHcCCCCCC----CEEEE----CCEeCCCCCHHHHhcccEEEccCCC
Q 007152 387 VLKGITLKLLS--GSKIALVGPSGGGKSTIANLIERFYDPIK----GKILL----NGVPLVEISHEHLHRKISIVSQEPV 456 (616)
Q Consensus 387 vL~~isl~I~~--G~~vaIvG~sGsGKSTL~~lL~g~~~~~~----G~I~i----dg~~i~~~~~~~~r~~i~~v~Q~~~ 456 (616)
+.+.|++++++ |++++|+|+||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred cCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCc--ccc--------cccCCCCCCChhHHHHHHHHHHH--
Q 007152 457 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK--YQT--------FVGERGVRLSGGQKQRVAIARAL-- 524 (616)
Q Consensus 457 lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~G--ldT--------~vge~G~~LSGGQrQRlalARAl-- 524 (616)
+|++|++|||.++.. +..+..............++..++.+ ++. +..++|.++||||+||++++|++
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 999999999999865 44455565655555556666666543 333 22256777888888888888888
Q ss_pred -cc--CCCEEEEeCcC
Q 007152 525 -MM--NPRILLLDEAT 537 (616)
Q Consensus 525 -l~--~p~iliLDEpT 537 (616)
++ +++++++||||
T Consensus 314 l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 314 LLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHGGGCCCEEEECSS
T ss_pred HHHHcCCCEEEeCCCC
Confidence 66 78888888886
No 96
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.82 E-value=9.5e-20 Score=189.99 Aligned_cols=79 Identities=30% Similarity=0.392 Sum_probs=70.3
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEE
Q 007152 507 GVRLSGGQKQ------RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 507 G~~LSGGQrQ------RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
-..||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 7788999999999999999999999999999999998864 46899999999988889999999
Q ss_pred Ee--CCEE
Q 007152 580 VS--DGEI 585 (616)
Q Consensus 580 l~--~G~I 585 (616)
|+ +|..
T Consensus 326 l~~~~g~s 333 (339)
T 3qkt_A 326 ISLENGSS 333 (339)
T ss_dssp EEEETTEE
T ss_pred EEecCCcc
Confidence 85 5653
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=1.5e-20 Score=219.93 Aligned_cols=170 Identities=16% Similarity=0.146 Sum_probs=122.4
Q ss_pred CcEEEEe-----EEEECCCCCCCcceeceeEEEeC-------CCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe
Q 007152 368 GEVELDD-----VWFAYPSRPNHMVLKGITLKLLS-------GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP 435 (616)
Q Consensus 368 ~~I~~~~-----vsf~Y~~~~~~~vL~~isl~I~~-------G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~ 435 (616)
..|+++| |++.|++ +.++++|++|++++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999953 34799999999987 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcccE-EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhH
Q 007152 436 LVEISHEHLHRKIS-IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 514 (616)
Q Consensus 436 i~~~~~~~~r~~i~-~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQ 514 (616)
..++| ||||++. .-|+.|||... .|+.+.+. .| -.++|+|+
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r----------------ig~~d~~~---~~--------~stf~~em 856 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR----------------LGASDRIM---SG--------ESTFFVEL 856 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE----------------CC--------------------CHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH----------------cCCHHHHh---hc--------hhhhHHHH
Confidence 34666 9999983 55777777421 12222211 12 24567776
Q ss_pred HHHHHHHHHHccCCCEEEEeCcCCCCCHHH-HHHHHHHHHHHh-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEE--Ee
Q 007152 515 KQRVAIARALMMNPRILLLDEATSALDAES-EYLVQDAMDSLM-K-GRTVLVIAHRLSTVQS-ADTVAVVSDGEIV--ES 588 (616)
Q Consensus 515 rQRlalARAll~~p~iliLDEpTSaLD~~t-e~~i~~~l~~~~-~-~~T~I~ItHrl~~l~~-aD~Iivl~~G~Iv--e~ 588 (616)
++ +++||++..+|+++||||||+++|+.. ...+.+.++.+. + ++|+|++||.++.+.. +|++.++ +|++. +.
T Consensus 857 ~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~ 934 (1022)
T 2o8b_B 857 SE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVE 934 (1022)
T ss_dssp HH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC--
T ss_pred HH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEe
Confidence 64 999999999999999999999999986 455666776664 3 7899999999998765 8998887 58887 45
Q ss_pred cCh
Q 007152 589 GTH 591 (616)
Q Consensus 589 G~~ 591 (616)
|+.
T Consensus 935 ~~~ 937 (1022)
T 2o8b_B 935 NEC 937 (1022)
T ss_dssp ---
T ss_pred cCc
Confidence 543
No 98
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=7.9e-22 Score=196.29 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=109.6
Q ss_pred CCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHH
Q 007152 384 NHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIE 463 (616)
Q Consensus 384 ~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIr 463 (616)
+.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.+| ..++.++|++|+++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999987 666654 367889999999744456999
Q ss_pred HHHhcCCC-------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCc
Q 007152 464 ENIAYGCD-------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 536 (616)
Q Consensus 464 eNi~~g~~-------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEp 536 (616)
+|+.+... ...+.+++.+.++. +.++.+..+ ..||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 99875321 11223334444332 223444443 4699999999988 688899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEecCc-hhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 007152 537 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRL-STVQS-ADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 537 TSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl-~~l~~-aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
....|.. +.++ .+.|++++||.. ...+. ++.+ ++|+ +.+++.+
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8887764 2222 378999999974 33343 3334 6675 6666654
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.81 E-value=4e-20 Score=210.93 Aligned_cols=153 Identities=22% Similarity=0.341 Sum_probs=115.3
Q ss_pred CCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHH-------HHHHHHHcCchHHHHc
Q 007152 422 YDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSAD-------IENAAKMANAHDFISN 494 (616)
Q Consensus 422 ~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~-------i~~al~~a~l~~~i~~ 494 (616)
+.|....++++|++|.+ +...||.|++.|...-..+.++ +.+..+.. +++..
T Consensus 432 l~~~~l~v~~~g~~i~q------------------~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGE------------------VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHH------------------HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHH
T ss_pred cCHHHheeEECCCcHHH------------------HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhh
Confidence 46777788888876642 3456888888875322223311 11221221 11222
Q ss_pred CCCccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchh
Q 007152 495 FPEKYQTF-VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST 570 (616)
Q Consensus 495 Lp~GldT~-vge~G~~LSGGQrQRlalARAll~~p--~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~ 570 (616)
+ |++.. ....-.+|||||+|||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+||++.
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 1 33321 34455689999999999999999985 9999999999999999999999999886 58999999999999
Q ss_pred hhhcCEEEEE------eCCEEEEecChhHHhhc
Q 007152 571 VQSADTVAVV------SDGEIVESGTHEELLSK 597 (616)
Q Consensus 571 l~~aD~Iivl------~~G~Ive~G~~~eL~~~ 597 (616)
++.||+|++| ++|+++..|+++++.+.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999 79999999999999874
No 100
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=5.8e-20 Score=202.84 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=116.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCC
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD 471 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~ 471 (616)
+..+++|+.++|+|+||||||||++.++|...|. |+ +.+.+++|++. .++++|....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~-- 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSW-- 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTT--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHc--
Confidence 4489999999999999999999999999998875 53 12556677763 3566665321
Q ss_pred CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH-----HHH
Q 007152 472 GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE-----SEY 546 (616)
Q Consensus 472 ~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~-----te~ 546 (616)
..+.++ +...++ ..........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 332 -g~~~~~----~~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 332 -GMDFEE----MERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp -SCCHHH----HHHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred -CCCHHH----HHhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 122222 112222 22222334679999999999999999999999999 99999999 888
Q ss_pred HHHHHHHHHh-CCCeEEEEecCc----------hhhh-hcCEEEEEeCCE
Q 007152 547 LVQDAMDSLM-KGRTVLVIAHRL----------STVQ-SADTVAVVSDGE 584 (616)
Q Consensus 547 ~i~~~l~~~~-~~~T~I~ItHrl----------~~l~-~aD~Iivl~~G~ 584 (616)
.+.+.++.+. .+.|+|+|+|.. ..+. .||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8887777654 589999999998 5554 589999999887
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.9e-19 Score=162.59 Aligned_cols=88 Identities=28% Similarity=0.366 Sum_probs=77.0
Q ss_pred cccccc-----cCCCCCCChhHHHHHHHH------HHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEe
Q 007152 498 KYQTFV-----GERGVRLSGGQKQRVAIA------RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 565 (616)
Q Consensus 498 GldT~v-----ge~G~~LSGGQrQRlalA------RAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~It 565 (616)
+|++.+ .....+||||||||++|| ||++.+|++++|||||++||+++.+.+.+.|.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 234578999999999876 99999999999999999999999999999999874 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCEE
Q 007152 566 HRLSTVQSADTVAVV--SDGEI 585 (616)
Q Consensus 566 Hrl~~l~~aD~Iivl--~~G~I 585 (616)
|+....+.||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999877889999999 56654
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.79 E-value=2.8e-20 Score=211.31 Aligned_cols=147 Identities=18% Similarity=0.233 Sum_probs=114.6
Q ss_pred CCcEEEEeEEEECCCC--CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCCEEEECCEeCCCCCHHH
Q 007152 367 DGEVELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-PIKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~--~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-~~~G~I~idg~~i~~~~~~~ 443 (616)
.+.|++++. +||-- .+.++++|+||+ |++++|+||||||||||+++++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 346899988 45531 135799999999 99999999999999999999999874 7778753 1 1
Q ss_pred HhcccEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 444 LHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
.+..+++++| +|. -|+.||+.. .+|+|++|++.+|+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~----------------------------------------g~S~~~~e~~~la~ 648 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG----------------------------------------GKSTFMVEMEEVAL 648 (765)
T ss_dssp SEEEECCCSE---EEEECCC----------------------------------------------CCSHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh----------------------------------------cccHHHHHHHHHHH
Confidence 2456888887 454 356665532 25889999999999
Q ss_pred HH--ccCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHHhCCCeEEEEecCchhhhhc
Q 007152 523 AL--MMNPRILLLDEA---TSALDAESE-YLVQDAMDSLMKGRTVLVIAHRLSTVQSA 574 (616)
Q Consensus 523 Al--l~~p~iliLDEp---TSaLD~~te-~~i~~~l~~~~~~~T~I~ItHrl~~l~~a 574 (616)
++ +.+|+++||||| ||+||..+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99 999999999999 999999875 578888876 489999999999877655
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.79 E-value=5.3e-19 Score=190.46 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=67.8
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEEe
Q 007152 509 RLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 509 ~LSGGQrQRlalARAll----~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl~ 581 (616)
.||||||||++|||+|. ++||++|||||||+||+.+...+.+.|++.. ++.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 6899999999999999999999999998875 3679999999999999999999985
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.79 E-value=6.5e-21 Score=199.10 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=122.6
Q ss_pred cceece-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCC----CE-EEECCEeCCCCCHHHHhcccEEEccCCCc
Q 007152 386 MVLKGI-TLKLLSGSKIALVGPSGGGKSTIANLIERFY--DPIK----GK-ILLNGVPLVEISHEHLHRKISIVSQEPVL 457 (616)
Q Consensus 386 ~vL~~i-sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~--~~~~----G~-I~idg~~i~~~~~~~~r~~i~~v~Q~~~l 457 (616)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |. |++|+.+. + .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~----~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F----RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C----CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C----CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 6666 67 99999664 1 25678999999999
Q ss_pred CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc-------cCCCE
Q 007152 458 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-------MNPRI 530 (616)
Q Consensus 458 f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll-------~~p~i 530 (616)
+..|+.+||.+..+ .+ |++|+|++.++++++ .+|++
T Consensus 192 ~~~~v~~ni~~~~~--~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~l 234 (349)
T 1pzn_A 192 DPDEVLKHIYVARA--FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKL 234 (349)
T ss_dssp CHHHHGGGEEEEEC--CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEE
T ss_pred CHHHHhhCEEEEec--CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCE
Confidence 98899999988743 22 345777777777777 68999
Q ss_pred EEEeCcCCCCCHHH------------HHHHHHHHHHHh--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 007152 531 LLLDEATSALDAES------------EYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 531 liLDEpTSaLD~~t------------e~~i~~~l~~~~--~~~T~I~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
+|+||||+.+|++. -..+.+.|.++. .+.|+|+++|....... ++.+.+...|++.+.+++..|.
T Consensus 235 lIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 235 LIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 99999999999863 244555555543 48899999998875432 3456777889988888877764
No 105
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.78 E-value=7.1e-19 Score=203.19 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=119.3
Q ss_pred CcEEEEeEEEECCCC--CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHH--------HcCCCCCCCEEEECCEeCC
Q 007152 368 GEVELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLI--------ERFYDPIKGKILLNGVPLV 437 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~--~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL--------~g~~~~~~G~I~idg~~i~ 437 (616)
..|++++...-+-+. ....+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888765433221 134799999999999999999999999999999999 66555544321
Q ss_pred CCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHH
Q 007152 438 EISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 517 (616)
Q Consensus 438 ~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQR 517 (616)
++.+. .+|. ..++.+.+ ...+|+|++++
T Consensus 702 ----------~~~~d---~i~~-------------------------~ig~~d~l--------------~~~lStf~~e~ 729 (934)
T 3thx_A 702 ----------VSIVD---CILA-------------------------RVGAGDSQ--------------LKGVSTFMAEM 729 (934)
T ss_dssp ----------EECCS---EEEE-------------------------ECC-----------------------CHHHHHH
T ss_pred ----------chHHH---HHHH-------------------------hcCchhhH--------------HHhHhhhHHHH
Confidence 11000 0110 01111111 13478888888
Q ss_pred HHHHHHH--ccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 007152 518 VAIARAL--MMNPRILLLDEATSALDAESEYLV-QDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHE 592 (616)
Q Consensus 518 lalARAl--l~~p~iliLDEpTSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~ 592 (616)
..+|+++ +.+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+..+.||++..+++|++...++.+
T Consensus 730 ~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 730 LETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 8888888 899999999999999999977776 44444443 389999999999999999999999999999887766
Q ss_pred HH
Q 007152 593 EL 594 (616)
Q Consensus 593 eL 594 (616)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 106
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=7.6e-19 Score=201.24 Aligned_cols=135 Identities=23% Similarity=0.362 Sum_probs=106.0
Q ss_pred CcCCccHHHHHhcCCCCCCCH----------HHHHHHHHHcCchHHHHcCCCccccc-ccCCCCCCChhHHHHHHHHHHH
Q 007152 456 VLFNCSIEENIAYGCDGKASS----------ADIENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 456 ~lf~~TIreNi~~g~~~~~~~----------~~i~~al~~a~l~~~i~~Lp~GldT~-vge~G~~LSGGQrQRlalARAl 524 (616)
.++..||.|++.|...-..+. +++++-+ +++..+ |++.. ....-.+|||||+|||+||++|
T Consensus 465 q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl------~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL 536 (993)
T 2ygr_A 465 EVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL------GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQI 536 (993)
T ss_dssp CSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH------HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH------HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHH
Confidence 356779999999964322333 1222221 122221 33322 3455668999999999999999
Q ss_pred ccC--CCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHh
Q 007152 525 MMN--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELL 595 (616)
Q Consensus 525 l~~--p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~ 595 (616)
..+ |++|||||||++||+...+.+.+.|+++. .|.|+|+|+||++.++.||+|++| ++|+++..|+++++.
T Consensus 537 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 537 GSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp TTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred hhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 998 58999999999999999999999998875 589999999999999999999999 799999999999998
Q ss_pred hcC
Q 007152 596 SKG 598 (616)
Q Consensus 596 ~~~ 598 (616)
+..
T Consensus 617 ~~~ 619 (993)
T 2ygr_A 617 RNK 619 (993)
T ss_dssp HCT
T ss_pred hhh
Confidence 753
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.77 E-value=7.3e-20 Score=179.71 Aligned_cols=148 Identities=17% Similarity=0.151 Sum_probs=103.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-------CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHH
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDP-------IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 466 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-------~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi 466 (616)
-|++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. ++ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996655 445888888542 12 2357788888888888999999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc-------cCCCEEEEeCcCCC
Q 007152 467 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-------MNPRILLLDEATSA 539 (616)
Q Consensus 467 ~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll-------~~p~iliLDEpTSa 539 (616)
.+..+ .+..+ |++.+..+++++ .+|++++|||||+.
T Consensus 95 ~~~~~--~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 95 YVARA--FNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp EEEEC--CSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred EEEec--CChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 88643 22211 222233333333 48999999999999
Q ss_pred CCHH-------HH-----HHHHHHHHHHh--CCCeEEEEec----Cchhhhh-cCEEEEEeCCE
Q 007152 540 LDAE-------SE-----YLVQDAMDSLM--KGRTVLVIAH----RLSTVQS-ADTVAVVSDGE 584 (616)
Q Consensus 540 LD~~-------te-----~~i~~~l~~~~--~~~T~I~ItH----rl~~l~~-aD~Iivl~~G~ 584 (616)
+|++ .+ ..+.+.+.++. .+.|+|+||| ....+.+ ||++++|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 22 25666665543 3899999999 4444654 89999998753
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1e-20 Score=183.15 Aligned_cols=169 Identities=16% Similarity=0.192 Sum_probs=107.5
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----CCCCCEEEE-------CCEeCC
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY-----DPIKGKILL-------NGVPLV 437 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~-----~~~~G~I~i-------dg~~i~ 437 (616)
|+++|++|+|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 888898765 233332
Q ss_pred ---CCC--------HHHHhcccEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccC
Q 007152 438 ---EIS--------HEHLHRKISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 505 (616)
Q Consensus 438 ---~~~--------~~~~r~~i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge 505 (616)
.+. .+.+++.++++.|+...+++ ++..++..+. ...++++.+.++..+ +|. -.++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~-------~~~---~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL--KDLDQQMIEWAVDSN-------IAV---LVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC--CHHHHHHHHHHHHTT-------CCE---EEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC--chhHHHHHHHHHHcC-------CCe---EEEEe
Confidence 111 13466666677765444433 3444443321 111233444443222 221 12344
Q ss_pred CCCCCChhHHHH-HHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 007152 506 RGVRLSGGQKQR-VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 506 ~G~~LSGGQrQR-lalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~ 556 (616)
.--.+|+||||| +..||+++++|+++++||||||+|..+...+.+.|.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 445789999999 899999999999999999999999999999999998765
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.76 E-value=3.9e-21 Score=214.93 Aligned_cols=190 Identities=18% Similarity=0.301 Sum_probs=122.7
Q ss_pred cEEEEeEEEECCCCCCCcceece----------eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCC
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGI----------TLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLV 437 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~ 437 (616)
.++++|+++.|++. ..++|+.+ ++++|. +||||+||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999642 23455544 377775 999999999999999999999988 7999999999963
Q ss_pred CC---CHHHHhcccEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh
Q 007152 438 EI---SHEHLHRKISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 513 (616)
Q Consensus 438 ~~---~~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG 513 (616)
.. ....+|+.++|++|++.+++ .|+++||.++.. . +... +..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~----------~---------~~~~-----------~~~~s-- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQN----------A---------IAGE-----------GMGIS-- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHH----------H---------HHCS-----------SSCCC--
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHH----------H---------hcCC-----------ccccc--
Confidence 21 24578899999999998876 599999865310 0 0000 11111
Q ss_pred HHHHHHHHHHHccCCCEEEEeCc------CCCCCHHHHHHHHHHHHHHh-C--CCeEEEEecCchh--------hhh---
Q 007152 514 QKQRVAIARALMMNPRILLLDEA------TSALDAESEYLVQDAMDSLM-K--GRTVLVIAHRLST--------VQS--- 573 (616)
Q Consensus 514 QrQRlalARAll~~p~iliLDEp------TSaLD~~te~~i~~~l~~~~-~--~~T~I~ItHrl~~--------l~~--- 573 (616)
++++.++.+...+|+++++||| |++||+.+++.+.+.++++. + +.++++++|.++. ++.
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 2334444555568999999999 99999999999999998853 2 4578888999763 222
Q ss_pred --cCEEEEEeCCEEEEecChhHHh
Q 007152 574 --ADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 574 --aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
...|+|+.++.+++.|+.+++.
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTTCCC
T ss_pred cCCceEEEecchhhcCcccHHHHH
Confidence 2568999999999888876543
No 110
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.75 E-value=3.1e-20 Score=184.83 Aligned_cols=180 Identities=13% Similarity=0.079 Sum_probs=110.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH--cCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE--RFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~--g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
++++++++.|++- + .++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+... .....++.
T Consensus 7 ~~~~~i~tg~~~l-D-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGF-D-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTT-G-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhH-H-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 5566777666432 1 13333 69999999999999999999999999 7756778888887743221 12334467
Q ss_pred cEEEccCCCcCC-ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf~-~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+++++|+...+. -++.++...... ....+..... ...+-++.++...+..-..
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVG--LPSEEKFVLE------------------------DRFNVDNFLRYIYRVVKAI 134 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC---------------------------------------------CCHHHHHHHHHHHHHHT
T ss_pred cCCChHHHhhcCCEEEEEccccccc--cccccceecc------------------------CcccHHHHHHHHHHHHHhh
Confidence 888888764332 233333322100 0000000000 0122344444444444457
Q ss_pred CCCEEEEeCcCCCCC-----HHHHHHHHHHHHHHh-CCCeEEEEecCchhh----------hhc-CEEEEEe
Q 007152 527 NPRILLLDEATSALD-----AESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSA-DTVAVVS 581 (616)
Q Consensus 527 ~p~iliLDEpTSaLD-----~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l----------~~a-D~Iivl~ 581 (616)
+|++++|||||+.+| +...+.+.+.++.+. .++|+|++||.++.. ..| |+|++|+
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999999999997 556666777766554 489999999999876 567 9999995
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.75 E-value=5.3e-19 Score=180.64 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHHH--hcccEEEccCCCcCC-ccHHHHHhcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEHL--HRKISIVSQEPVLFN-CSIEENIAYG 469 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~----~~~~--r~~i~~v~Q~~~lf~-~TIreNi~~g 469 (616)
+|++++||||||||||||+++|+|+++|++|+|.++|.|+.... ...| |..+++|+|++.+++ .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999987654 2333 457999999998775 4888998653
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCCCCCHHHHHH
Q 007152 470 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYL 547 (616)
Q Consensus 470 ~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTSaLD~~te~~ 547 (616)
.. .+.+..+-..+...+. ....++..++||.+||||+..+|+ ++.|| |+++. .
T Consensus 181 ~~--------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~ 235 (304)
T 1rj9_A 181 KA--------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------N 235 (304)
T ss_dssp HH--------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------H
T ss_pred Hh--------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------H
Confidence 10 0111111111211111 112346677999999999999999 44455 44443 3
Q ss_pred HHHHHHHHh--CCCeEEEEecCchh
Q 007152 548 VQDAMDSLM--KGRTVLVIAHRLST 570 (616)
Q Consensus 548 i~~~l~~~~--~~~T~I~ItHrl~~ 570 (616)
+.+.++++. .+.|+|++||...+
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHHcCCcEEEEECCccc
Confidence 444443332 27899999998654
No 112
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.74 E-value=7.1e-21 Score=193.31 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=96.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCC--
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK-- 473 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~-- 473 (616)
+++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999764 2 0 1 45667779999999999999998763200
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCCccccc------ccCCCCCCChhHHHHHHHH--HHHccCCCEEEEeCcCCCCCHHH
Q 007152 474 ASSADIENAAKMANAHDFISNFPEKYQTF------VGERGVRLSGGQKQRVAIA--RALMMNPRILLLDEATSALDAES 544 (616)
Q Consensus 474 ~~~~~i~~al~~a~l~~~i~~Lp~GldT~------vge~G~~LSGGQrQRlalA--RAll~~p~iliLDEpTSaLD~~t 544 (616)
.+....-++.....+.+++..+++|++|. +...+..+||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000011122334567889999998764 4567889999999999998 666 999999999999999864
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=8.9e-20 Score=193.75 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=102.6
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~ 447 (616)
+.|+++|++++|++ .++++|+||+| +|||+||||||||+++|+|...|..| .+|.++.. .....++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~-~~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI-KKTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC-ccceeeee
Confidence 35899999999964 36999999998 99999999999999999999886655 24433321 11122457
Q ss_pred cEEEccCCCcC-CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 448 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 448 i~~v~Q~~~lf-~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
+++++|++.++ .-||.||+.++.. .+.++.++.+ .+++.. .++++.+||++||||+++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA--VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp EECC------CEEEEEEECC-------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh--ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhcc
Confidence 89999998877 6799999999853 2222222221 123321 344567789999999999
Q ss_pred CCC---EEEEeCcC-CCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh
Q 007152 527 NPR---ILLLDEAT-SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 571 (616)
Q Consensus 527 ~p~---iliLDEpT-SaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l 571 (616)
+|+ ++++|||| ++||+... .+++ .+..+.++|+|.|+.+.+
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred CCCeeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 999 99999999 69998763 3333 344578999999998764
No 114
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.74 E-value=4.3e-19 Score=185.05 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=108.3
Q ss_pred EeEEEECCCCCCCcceeceeE-------EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CCEEEECCEeCCCCCHHHH
Q 007152 373 DDVWFAYPSRPNHMVLKGITL-------KLLSGSKIALVGPSGGGKSTIANLIERFYDPI-KGKILLNGVPLVEISHEHL 444 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl-------~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~-~G~I~idg~~i~~~~~~~~ 444 (616)
.+++++|... ..+.|+++.+ ..++|+.++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5677887543 3467888776 77899999999999999999999999999997 577755443332 21 2
Q ss_pred hcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHH
Q 007152 445 HRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 524 (616)
Q Consensus 445 r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAl 524 (616)
+...++++|.+.-.. ..+-.+ +|||||
T Consensus 167 ~~~~~~v~q~~~~~~-------------~~~~~~----------------------------------------~La~aL 193 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD-------------TLGFSE----------------------------------------ALRSAL 193 (356)
T ss_dssp CCSSSEEEEEEBTTT-------------BSCHHH----------------------------------------HHHHHT
T ss_pred hccccceeeeeeccc-------------cCCHHH----------------------------------------HHHHHh
Confidence 334556666542111 011111 999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCC
Q 007152 525 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 583 (616)
Q Consensus 525 l~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G 583 (616)
..+|+++++|||| |+++.+.+.+. ...|+|+++++|..+.+..+||+++|..|
T Consensus 194 ~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 194 REDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp TSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999 78876665554 33589999999999999999999988543
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.73 E-value=9.4e-18 Score=156.68 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEE--
Q 007152 507 GVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV-- 580 (616)
Q Consensus 507 G~~LSGGQrQRlalARAll----~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl-- 580 (616)
...||||||||++|||+|. ++||++||||||++||+.+++.+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 5679999999999999999999999999988888999999999999999999854
Q ss_pred eCCEE
Q 007152 581 SDGEI 585 (616)
Q Consensus 581 ~~G~I 585 (616)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 67764
No 116
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=9.1e-20 Score=186.67 Aligned_cols=162 Identities=14% Similarity=0.112 Sum_probs=81.0
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCCEEEECCEeCCCCCHHHHhcccEEE
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERF-YDPIKGKILLNGVPLVEISHEHLHRKISIV 451 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~-~~~~~G~I~idg~~i~~~~~~~~r~~i~~v 451 (616)
+||+++|.+ ..++++++|+| +|+|+||+|||||++.|.|. ..|++| |.++|.++.. . .. ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 478888863 36999999998 99999999999999999998 889999 9888887653 1 12 4578999
Q ss_pred ccCCCcC-CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q 007152 452 SQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 530 (616)
Q Consensus 452 ~Q~~~lf-~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~i 530 (616)
+|++.++ .-|+.||..++.. ....++.....+. +.+. ++.. -.++|||||||+++|||+. +
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~--l~~~-------~~~~----~~~~sgg~rqrv~~ara~~----l 130 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA-INCRDCFKTIISY--IDEQ-------FERY----LHDESGLNRRHIIDNRVHC----C 130 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTTHHHH--HHHH-------HHHH----HHHHTSSCCTTCCCCCCCE----E
T ss_pred ecCCCcccCcchhhhhhhhhh-cCcHHHHHHHHHH--HHHH-------HHHH----HHHhCHHhhhhhhhhhhhh----e
Confidence 9987654 5699999888643 1111121222111 1111 1111 2358999999999999985 9
Q ss_pred EEEeCcCCC-CCHHHHHHHHHHHHHHhC--CCeEEEEecCch
Q 007152 531 LLLDEATSA-LDAESEYLVQDAMDSLMK--GRTVLVIAHRLS 569 (616)
Q Consensus 531 liLDEpTSa-LD~~te~~i~~~l~~~~~--~~T~I~ItHrl~ 569 (616)
+++||||++ ||+... +.++++.+ +.++|+.+|++.
T Consensus 131 l~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 131 FYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999999985 999874 33333332 567788889875
No 117
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.68 E-value=3.2e-17 Score=188.90 Aligned_cols=157 Identities=15% Similarity=0.190 Sum_probs=104.2
Q ss_pred cEEEEeEEEECC------CCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH
Q 007152 369 EVELDDVWFAYP------SRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE 442 (616)
Q Consensus 369 ~I~~~~vsf~Y~------~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~ 442 (616)
.|++++.. +| ...+++|++|+||++++|++++|+||||||||||++++++..-
T Consensus 640 ~i~i~~~r--HP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------- 698 (918)
T 3thx_B 640 KIVIKNGR--HPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------- 698 (918)
T ss_dssp EEEEEEEC--CHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEecc--chhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-------------------
Confidence 57777653 33 1114579999999999999999999999999999999875311
Q ss_pred HHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 443 HLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 443 ~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+.+.-.+||++..-+ ++.+++ +...++.+. +..+-..+|+|++|+..++|
T Consensus 699 -~aq~g~~vpa~~~~i--~~~d~i----------------~~~ig~~d~-----------l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 699 -MAQIGSYVPAEEATI--GIVDGI----------------FTRMGAADN-----------IYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp -HHHHTCCBSSSEEEE--ECCSEE----------------EEEC---------------------CCHHHHHHHHHHHHH
T ss_pred -HhhcCccccchhhhh--hHHHHH----------------HHhCChHHH-----------HHHhHHHhhHHHHHHHHHHH
Confidence 001112333322100 000000 001111111 11223578999999999999
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHh--CCCeEEEEecCchhhhhcCEE
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQ-DAMDSLM--KGRTVLVIAHRLSTVQSADTV 577 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~-~~l~~~~--~~~T~I~ItHrl~~l~~aD~I 577 (616)
+ ..+|+++||||||+++|+.....+. ..++.+. .++|+|++||.++..+.||+.
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9 7999999999999999999877776 4445442 489999999999888777653
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.68 E-value=5.1e-17 Score=159.42 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=113.6
Q ss_pred CcceeceeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc---ccEEEccCCCcCCc
Q 007152 385 HMVLKGITL-KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR---KISIVSQEPVLFNC 460 (616)
Q Consensus 385 ~~vL~~isl-~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~---~i~~v~Q~~~lf~~ 460 (616)
-+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|.+.+.+.+. +.+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 357888887 8999999999999999999999999999888888888766443 3333332 2333333221
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCcCC
Q 007152 461 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATS 538 (616)
Q Consensus 461 TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~--iliLDEpTS 538 (616)
.+++.+-.. ... ... + -.+- ...|.+|.++...+.+...+|+ ++|+||||+
T Consensus 82 --~~~~~~~~~--~~~--------------~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 82 --EKKLIIIDA--LMK--------------EKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp --TTTEEEEEC--CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred --hCCEEEEec--ccc--------------ccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 011111110 000 000 0 0011 1348999998888887778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHh--CCCeEEEEecCc--------hhh-hhcCEEEEEeCC
Q 007152 539 AL--DAESEYLVQDAMDSLM--KGRTVLVIAHRL--------STV-QSADTVAVVSDG 583 (616)
Q Consensus 539 aL--D~~te~~i~~~l~~~~--~~~T~I~ItHrl--------~~l-~~aD~Iivl~~G 583 (616)
.+ |+.....+.+.|+++. .+.|+|+++|.. ..+ ..||+|++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988888888887763 478999999998 334 459999999754
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.67 E-value=3.5e-18 Score=166.43 Aligned_cols=141 Identities=12% Similarity=0.111 Sum_probs=104.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cH----HHHH
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SI----EENI 466 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TI----reNi 466 (616)
..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. |+ .||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 5789999999999999999999999999986 78999999876543 245689999999988865 44 4555
Q ss_pred hcCCCC-CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHH
Q 007152 467 AYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 545 (616)
Q Consensus 467 ~~g~~~-~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te 545 (616)
.+.... ..+.++ ++.++..++++||| ||+.+.
T Consensus 88 ~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 88 EVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHHH
Confidence 442110 011222 23334456999999 999999
Q ss_pred HHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 007152 546 YLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 596 (616)
Q Consensus 546 ~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~ 596 (616)
+.+.+.+. +++|++++||+++.++. |+ ++.| .|+.+++.+
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99998775 57899999999998876 43 6667 577777764
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=7.2e-18 Score=178.20 Aligned_cols=180 Identities=15% Similarity=0.153 Sum_probs=116.9
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSK--IALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR 446 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~--vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~ 446 (616)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466667 788863 35 9999999999999 9999999999999999999984 4566665544555567
Q ss_pred ccEEEccCCCcC-CccHHHHHhcCCCCCCCHHHHHH----HHHHcCchHHHHc-------CCCccccc-------ccCCC
Q 007152 447 KISIVSQEPVLF-NCSIEENIAYGCDGKASSADIEN----AAKMANAHDFISN-------FPEKYQTF-------VGERG 507 (616)
Q Consensus 447 ~i~~v~Q~~~lf-~~TIreNi~~g~~~~~~~~~i~~----al~~a~l~~~i~~-------Lp~GldT~-------vge~G 507 (616)
.++|++|++.++ +-|+.||+.+|.. .+.+.-+. .++. ...+++.. ++..-|+. |-+.+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~ 159 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG 159 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC---CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc--cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC
Confidence 899999999887 5699999999853 34322111 1111 11112221 22223333 23445
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHH-Hh-CCCeEEEEecC
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS-LM-KGRTVLVIAHR 567 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~-~~-~~~T~I~ItHr 567 (616)
..|+-.+ +.++|+|-.+++|+++|+||..|.+.--..+.+.|++ +. .|..++.++..
T Consensus 160 ~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 160 HSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp ---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 5677766 7999999999999999999999998877778888875 43 56788888853
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.66 E-value=3.5e-19 Score=183.94 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=111.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC--------CCCCCEEEECCEeCCCCC---------------HHHHhcccEEE---c
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY--------DPIKGKILLNGVPLVEIS---------------HEHLHRKISIV---S 452 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~--------~~~~G~I~idg~~i~~~~---------------~~~~r~~i~~v---~ 452 (616)
+.++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998763 45778889988 7
Q ss_pred cCCCc-CCccHHHHHhcCCCCCCCHHHH---HHHHHHcCchHHHH--cCCCcccccccCCCCCCChhHHHHHHHHHHHcc
Q 007152 453 QEPVL-FNCSIEENIAYGCDGKASSADI---ENAAKMANAHDFIS--NFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 526 (616)
Q Consensus 453 Q~~~l-f~~TIreNi~~g~~~~~~~~~i---~~al~~a~l~~~i~--~Lp~GldT~vge~G~~LSGGQrQRlalARAll~ 526 (616)
|++.+ |+.|+.||..++.|. .--..+ .+.-+...++..+. .+.+..+.. .++||||+||...+|+++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEEEEE
Confidence 88764 788999999988651 100011 01111111111111 111111111 1589999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 569 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~ 569 (616)
+|+++ ||| +.+.+.++++.++.|++++||+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 677777877777899999999754
No 122
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.65 E-value=3.5e-20 Score=179.63 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=91.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhc----CC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAY----GC 470 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~----g~ 470 (616)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+.++|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999886 5 26889999999898888888642 11
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCc--ccccccCCCCCCChhHHHHHHHH-HHHccCCCEEEEeCcC
Q 007152 471 DGKASSADIENAAKMANAHDFISNFPEK--YQTFVGERGVRLSGGQKQRVAIA-RALMMNPRILLLDEAT 537 (616)
Q Consensus 471 ~~~~~~~~i~~al~~a~l~~~i~~Lp~G--ldT~vge~G~~LSGGQrQRlalA-RAll~~p~iliLDEpT 537 (616)
+...+.+.+ .+++..++.| +++++.++|..+||||+||+++| |+++.+++++++|||.
T Consensus 80 ~~~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PETFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CchhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 211222322 2344444444 78889999999999999999998 9999999998899985
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.65 E-value=3.6e-18 Score=162.74 Aligned_cols=161 Identities=19% Similarity=0.072 Sum_probs=102.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGK 473 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~ 473 (616)
.+++|+.++|+|+||||||||+++|+|. |..|.|.+||.++..... .++.++|++|++. .+.|+++|+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~-- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAG-- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHH--
Confidence 4789999999999999999999999998 778999999976532211 1345788888765 56788999865310
Q ss_pred CCHHHHHHHHHHcCchHHHHcCCC--ccccc--ccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHH
Q 007152 474 ASSADIENAAKMANAHDFISNFPE--KYQTF--VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 549 (616)
Q Consensus 474 ~~~~~i~~al~~a~l~~~i~~Lp~--GldT~--vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~ 549 (616)
. .. ..+-...++.+.. +++.. .+.....+|+||+||+++||++.++|+++ +|++..+.+.
T Consensus 78 -----~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~ 141 (191)
T 1zp6_A 78 -----R--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLH 141 (191)
T ss_dssp -----H--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHH
T ss_pred -----H--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHH
Confidence 0 01 1111111111111 11111 12334579999999999999999999876 5887766666
Q ss_pred HHHHHHhCCCeEEEEecCchhhhhcCEE
Q 007152 550 DAMDSLMKGRTVLVIAHRLSTVQSADTV 577 (616)
Q Consensus 550 ~~l~~~~~~~T~I~ItHrl~~l~~aD~I 577 (616)
+.+..+.....+++.|+..+.-+.+|+|
T Consensus 142 ~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 142 SQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHhccCcccccEEECCCCCHHHHHHHH
Confidence 6665443222344555543333334444
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.64 E-value=2.1e-16 Score=160.12 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=103.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHh-cCCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA-YGCDG 472 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~-~g~~~ 472 (616)
.+++|+.++|+||||||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 478999999999999999999999998664 57664 3543321 3467788776543 23333332 332
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC--CCCHHHH---HH
Q 007152 473 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS--ALDAESE---YL 547 (616)
Q Consensus 473 ~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS--aLD~~te---~~ 547 (616)
..++++..++++...+.+ ..+.....||+||+|++ |+++++|+++|+||||+ ++|..+. ..
T Consensus 93 ~~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 HLSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp TSCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred hcChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 244555555555544332 22345567999998865 78889999999999999 9998654 77
Q ss_pred HHHHHHHHh--CCCeEEEEecCchhh
Q 007152 548 VQDAMDSLM--KGRTVLVIAHRLSTV 571 (616)
Q Consensus 548 i~~~l~~~~--~~~T~I~ItHrl~~l 571 (616)
+.+.|.++. .++|+|+|+|.....
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 777787763 489999999988654
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.64 E-value=4.9e-16 Score=151.17 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=97.2
Q ss_pred cceeceeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 386 MVLKGITL-KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 386 ~vL~~isl-~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
+.|+++.. -+++|+.++|+|++|||||||++.+++ .+..+.++++..+ .++...++ +
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~------------------~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLV------------------Q 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHH------------------H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHH------------------H
Confidence 45666655 699999999999999999999999999 4433444443321 11222222 1
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChh--HHHHHHHHHHHccC-CCEEEEeCcCCCCC
Q 007152 465 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG--QKQRVAIARALMMN-PRILLLDEATSALD 541 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGG--QrQRlalARAll~~-p~iliLDEpTSaLD 541 (616)
..... ..+.+++ .+.+ .+. ..|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ~~~~~---~~~~~~~------------~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 MAETR---GLNPEEA------------LSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHTT---TCCHHHH------------HHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHhc---CCChHHH------------hhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 11100 1112111 1111 011 22333 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHhC--CCeEEEEecCch-------------hh-hhcCEEEEEeCC
Q 007152 542 AESE--------YLVQDAMDSLMK--GRTVLVIAHRLS-------------TV-QSADTVAVVSDG 583 (616)
Q Consensus 542 ~~te--------~~i~~~l~~~~~--~~T~I~ItHrl~-------------~l-~~aD~Iivl~~G 583 (616)
+..+ ..+.+.|+++.+ +.|+|+++|... .+ ..||.|++|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 8543 335555665543 789999999865 23 469999999754
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.62 E-value=7.8e-17 Score=184.14 Aligned_cols=165 Identities=14% Similarity=0.149 Sum_probs=108.4
Q ss_pred cEEEEeEEEECCCC----CCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEEECCEeCCCCCHHH
Q 007152 369 EVELDDVWFAYPSR----PNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKILLNGVPLVEISHEH 443 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~----~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~idg~~i~~~~~~~ 443 (616)
.|++++.. +|-- .+..+++|+||+ ++|++++|+||||||||||+|+++|+..+ +.|. .+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 57777653 4410 134789999999 99999999999999999999999997422 2231 1110
Q ss_pred HhcccEEEccCCCcCCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 444 LHRKISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 444 ~r~~i~~v~Q~~~lf~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
-+..+++++| +|.. ++.||+..+ -..+|+|+++ ++.+.
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~-------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG-------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp SEEEECCCCE---EEEEEC------------------------------------------------CHHHHHH-HHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh-------------------------------------hhhhhHHHHH-HHHHH
Confidence 1234566655 3321 333333211 1235666654 55555
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHh--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLV-QDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 588 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i-~~~l~~~~--~~~T~I~ItHrl~~l~~aD~Iivl~~G~Ive~ 588 (616)
....+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 56899999999999999888754443 44555543 37899999999998888998877777776543
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.58 E-value=2.2e-15 Score=148.83 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=93.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc--CCCC-----CCCEEEECCEeCCC-CCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIER--FYDP-----IKGKILLNGVPLVE-ISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g--~~~~-----~~G~I~idg~~i~~-~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
-+++|+.++|+||||||||||++.+++ ..+| .+|.+++++.+... -....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 67889998865211 1123345567776664 5667
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCcCCCCCHH
Q 007152 466 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAE 543 (616)
Q Consensus 466 i~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--~~p~iliLDEpTSaLD~~ 543 (616)
+.+..+ .+.++..+.++ -+++++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~--~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 93 VAYARA--FNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp EEEEEC--CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred eEEEec--CCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHHHH
Confidence 666532 33333332221 111222 689999999999999986
Q ss_pred -------HH-----HHHHHHHHHHh--CCCeEEEEecCchhhh--------------------hcCEEEEEeCC
Q 007152 544 -------SE-----YLVQDAMDSLM--KGRTVLVIAHRLSTVQ--------------------SADTVAVVSDG 583 (616)
Q Consensus 544 -------te-----~~i~~~l~~~~--~~~T~I~ItHrl~~l~--------------------~aD~Iivl~~G 583 (616)
++ ..+.+.+.++. .++|+|+++|-..... .||.+++|+.|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 43 23444454433 3899999999654322 58999999865
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.56 E-value=4.8e-18 Score=176.49 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=118.9
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHHh
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHLH 445 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~----~~~r 445 (616)
|+++|++++|.. ..+|+++||++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 344566666742 358999999999999999999999999999999999999999999999998854331 2457
Q ss_pred cccEEEccCCCcCCc-------------cHHHHHhc---CC--------CC-CCCHHHHHHHHHHc-------------C
Q 007152 446 RKISIVSQEPVLFNC-------------SIEENIAY---GC--------DG-KASSADIENAAKMA-------------N 487 (616)
Q Consensus 446 ~~i~~v~Q~~~lf~~-------------TIreNi~~---g~--------~~-~~~~~~i~~al~~a-------------~ 487 (616)
..+++++|++.+|.. +++|.+.. +. ++ ..++..+.+.+..+ .
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 789999999998852 22333210 00 00 00111111111000 0
Q ss_pred chHHHHcCCCccc-cccc-CCCCCCChhHHHHHHHHHHHcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 007152 488 AHDFISNFPEKYQ-TFVG-ERGVRLSGGQKQRVAIARALMM------NPRILLLDEATSALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 488 l~~~i~~Lp~Gld-T~vg-e~G~~LSGGQrQRlalARAll~------~p~iliLDEpTSaLD~~te~~i~~~l~~~~ 556 (616)
+.+.+...|+-+- +.+. .....+|+|++|++..|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111121000 0001 0123579999999999999997 688876 99999999999999987754
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.52 E-value=3e-14 Score=150.23 Aligned_cols=77 Identities=31% Similarity=0.417 Sum_probs=69.6
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEE
Q 007152 508 VRLSGGQKQRV------AIARALMMN-PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 580 (616)
Q Consensus 508 ~~LSGGQrQRl------alARAll~~-p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl 580 (616)
..|||||+||+ ++|||+..+ |+++||||||++||+.+...+.+.|.++.++.|+|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999987 678999999 99999999999999999999999998876667999999999877889999999
Q ss_pred e-CCE
Q 007152 581 S-DGE 584 (616)
Q Consensus 581 ~-~G~ 584 (616)
+ +|.
T Consensus 359 ~k~~~ 363 (371)
T 3auy_A 359 KKDGN 363 (371)
T ss_dssp EESSS
T ss_pred EecCC
Confidence 7 443
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.51 E-value=6.3e-16 Score=165.27 Aligned_cols=153 Identities=17% Similarity=0.208 Sum_probs=104.5
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCC----HHH--HhcccEEEccCCCcC-Ccc
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEIS----HEH--LHRKISIVSQEPVLF-NCS 461 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~----~~~--~r~~i~~v~Q~~~lf-~~T 461 (616)
+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|..... ... .|+.|+|++|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999987765431 122 377899999998765 569
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccC--CCCCCChhHHHHHHHHHHHccC-CC-EEEEeCcC
Q 007152 462 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE--RGVRLSGGQKQRVAIARALMMN-PR-ILLLDEAT 537 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge--~G~~LSGGQrQRlalARAll~~-p~-iliLDEpT 537 (616)
+++|+.++....++ ++- +||. |. +-.++-.--+|++.++|++... |+ +++..+||
T Consensus 364 V~e~l~~a~~~~~D---------------vVL-----IDTa-Grl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 364 IFDAIQAAKARNID---------------VLI-----ADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHTTCS---------------EEE-----ECCC-CSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHhcCCC---------------EEE-----EeCC-CccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 99999876321111 100 1111 00 0011222235889999988654 53 55555588
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 007152 538 SALDAESEYLVQDAMDSLMKGRTVLVIAH 566 (616)
Q Consensus 538 SaLD~~te~~i~~~l~~~~~~~T~I~ItH 566 (616)
++.|.... .+.+.+. -+.|.+++||
T Consensus 423 tGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 87655422 2223322 3789999999
No 131
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.6e-14 Score=151.26 Aligned_cols=139 Identities=19% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc-CCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC-CccHHHHHhcCCCCCCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIER-FYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKAS 475 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g-~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf-~~TIreNi~~g~~~~~~ 475 (616)
+..+.|+||+|+||||++++++| ++.|+.|.+.++|.+...... -+..+++++|++++. +.+- .+ ..+
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~---~~~ 105 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG---NND 105 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC------------CC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC---Ccc
Confidence 34499999999999999999999 899999999999988764333 367899999998753 2110 01 112
Q ss_pred HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 007152 476 SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 555 (616)
Q Consensus 476 ~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~ 555 (616)
.+.+++.++.+. ... +++..+ .||| +..+|+++|+|||++ ||+.+.+.+.+.+.+.
T Consensus 106 ~~~~~~~i~~~~-----~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 106 RIVIQELLKEVA-----QME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp HHHHHHHHHHHT-----TTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-----Hhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 223444443321 111 111111 5676 778999999999999 9999999999999887
Q ss_pred hCCCeEEEEecCchh
Q 007152 556 MKGRTVLVIAHRLST 570 (616)
Q Consensus 556 ~~~~T~I~ItHrl~~ 570 (616)
.++.++|++||+++.
T Consensus 162 ~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSP 176 (354)
T ss_dssp TTTEEEEEEESCSCS
T ss_pred cCCCEEEEEeCCHHH
Confidence 778899999999864
No 132
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.48 E-value=3.3e-18 Score=162.96 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=107.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC-CccHHHHHhcCCCCCCCH
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDGKASS 476 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf-~~TIreNi~~g~~~~~~~ 476 (616)
|+.++|+||||||||||++.|++ |.+|.+.++|.++... ...++++|+...+ ..|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 67899999999999999999997 6789999998654321 2467788876433 347777775421
Q ss_pred HHHHHHHHHcCchHHHHcCCCcccccccC----CCCCC--ChhHHHHHHHHH------HHccCCCEEEEeCcCCCCCHHH
Q 007152 477 ADIENAAKMANAHDFISNFPEKYQTFVGE----RGVRL--SGGQKQRVAIAR------ALMMNPRILLLDEATSALDAES 544 (616)
Q Consensus 477 ~~i~~al~~a~l~~~i~~Lp~GldT~vge----~G~~L--SGGQrQRlalAR------All~~p~iliLDEpTSaLD~~t 544 (616)
..... .+....+ |...+. .-..+ |+|++|++.++. +++++|....+|+ ++|+..
T Consensus 67 ---~~~~~-~~~~~il-------d~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 67 ---VNFLL-AQNDVVL-------DYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp ---HHHHH-TTCEEEE-------ESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred ---HHHHh-cCCcEEE-------eeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 11111 1110011 111111 00124 889888988888 8888888888884 799987
Q ss_pred HHHHHHHHHHHh-CCCeEEEEecC-chhhhh-cCEEEEEeCCEEEEecChhHHh
Q 007152 545 EYLVQDAMDSLM-KGRTVLVIAHR-LSTVQS-ADTVAVVSDGEIVESGTHEELL 595 (616)
Q Consensus 545 e~~i~~~l~~~~-~~~T~I~ItHr-l~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 595 (616)
.+. .+.+..+. .+.|+|..||. ++.++. ||+|+ ++|+++..|+.+-|-
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 766 77777664 35799999999 887754 99998 999999999876653
No 133
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.47 E-value=1.1e-15 Score=151.78 Aligned_cols=167 Identities=15% Similarity=0.158 Sum_probs=107.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---cCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC-ccHHHHHhcC---
Q 007152 397 SGSKIALVGPSGGGKSTIANLIE---RFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN-CSIEENIAYG--- 469 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~---g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~-~TIreNi~~g--- 469 (616)
++++++|+|+||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999998876532 234556777888877665 5889998641
Q ss_pred ----------CCCCCCHHHHHHHHHHcCch--HHHHcCCC-c-ccccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe
Q 007152 470 ----------CDGKASSADIENAAKMANAH--DFISNFPE-K-YQTFVGERGVRLSGGQKQRVAIARAL-MMNPRILLLD 534 (616)
Q Consensus 470 ----------~~~~~~~~~i~~al~~a~l~--~~i~~Lp~-G-ldT~vge~G~~LSGGQrQRlalARAl-l~~p~iliLD 534 (616)
.+ .+.++..........+ -+++ .|. - ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~--~~~~~~~~l~~~~~~~~vi~L~-~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 102 RRGQHWLLDGFP--RTLGQAEALDKICEVDLVISLN-IPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp CTTSCEEEESCC--CSHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred cCCCeEEEECCC--CCHHHHHHHHhhcCCCEEEEEE-CCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 11 1232222221111110 0000 000 0 11111223346898 66 888 9999999999
Q ss_pred ----CcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEeC
Q 007152 535 ----EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 582 (616)
Q Consensus 535 ----EpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~~ 582 (616)
|||+++|..++..+.+.++++.+.. ..-....+..+++++++.
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~~~~-----~~v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYKDVA-----KPVIELYKSRGVLHQFSG 218 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHHHHH-----HHHHHHHHHTTCEEEEEC
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHhH-----HHHHHHHhhcCcEEEECC
Confidence 9999999999999999887764321 000112333566777764
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.47 E-value=7.2e-17 Score=171.56 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=93.6
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC----CHHHHhcccEEEc---------c
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI----SHEHLHRKISIVS---------Q 453 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~----~~~~~r~~i~~v~---------Q 453 (616)
+|+++ + .++|+.++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999999887421 1223455666655 9
Q ss_pred CCCcC--C-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH
Q 007152 454 EPVLF--N-----CSIEENIAYGCD--------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 518 (616)
Q Consensus 454 ~~~lf--~-----~TIreNi~~g~~--------~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl 518 (616)
+|.++ . .|+++|+.++.. ...+..+..+.+...++.++. ....|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 99763 2 389999876421 011223344455555554431 235799999999
Q ss_pred HHHHHHccCCCEEE
Q 007152 519 AIARALMMNPRILL 532 (616)
Q Consensus 519 alARAll~~p~ili 532 (616)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
No 135
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.47 E-value=3.6e-15 Score=154.49 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=81.1
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCCEEEEC-CEeCCCCCHHHHhcccEEEccCCCcCCc-cHH
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYD-PIKGKILLN-GVPLVEISHEHLHRKISIVSQEPVLFNC-SIE 463 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-~~~G~I~id-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIr 463 (616)
-++++++. .+|++++|+|+||||||||+|+|+|+.. |.+|+|.++ |.+.. ...+..++++||++++++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47778774 4899999999999999999999999999 999999987 76643 2346689999999998865 899
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 525 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll 525 (616)
++-.. ..+.+++.+ ...++++.+ |+...-...-.+|| ||+||++||++++
T Consensus 280 e~~l~----~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC----CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc----CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 96332 244544432 122333322 33333334446799 9999999999863
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.46 E-value=2e-15 Score=139.03 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=72.5
Q ss_pred EeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEc
Q 007152 373 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVS 452 (616)
Q Consensus 373 ~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~ 452 (616)
+|++++|++ ..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 455666742 36899999999999999999999999999999999999 9999999999887421 1112 2899
Q ss_pred cCCCcCCccHHHHHhc
Q 007152 453 QEPVLFNCSIEENIAY 468 (616)
Q Consensus 453 Q~~~lf~~TIreNi~~ 468 (616)
|++.+|.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9999998899999954
No 137
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.46 E-value=5.9e-14 Score=144.59 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=108.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHH----HHhcc--cEEEccCCCcCC-ccHHHHH
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHE----HLHRK--ISIVSQEPVLFN-CSIEENI 466 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~----~~r~~--i~~v~Q~~~lf~-~TIreNi 466 (616)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .|+++ +.+++|+..+++ .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999999876643 34444 459999988875 5899999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCCh-hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHH
Q 007152 467 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG-GQKQRVAIARALMMNPRILLLDEATSALDAESE 545 (616)
Q Consensus 467 ~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSG-GQrQRlalARAll~~p~iliLDEpTSaLD~~te 545 (616)
.++... +. +.+ -+||. |- ...-. =.++--.++|++..++++++||.+|. .|....
T Consensus 205 ~~~~~~--------------~~-d~v-----liDta-G~--~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~ 260 (328)
T 3e70_C 205 QHAKAR--------------GI-DVV-----LIDTA-GR--SETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ 260 (328)
T ss_dssp HHHHHH--------------TC-SEE-----EEEEC-CS--CCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH
T ss_pred HHHHhc--------------cc-hhh-----HHhhc-cc--hhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH
Confidence 765210 00 000 01221 10 00001 11233348999998888999996665 232221
Q ss_pred HHHHHHHHHHhCCCeEEEEecCchhh----------hhcCEEEEEeCCEEE
Q 007152 546 YLVQDAMDSLMKGRTVLVIAHRLSTV----------QSADTVAVVSDGEIV 586 (616)
Q Consensus 546 ~~i~~~l~~~~~~~T~I~ItHrl~~l----------~~aD~Iivl~~G~Iv 586 (616)
.+.+.+. .+.|.|++||--.+. ...-.|..+..|+-+
T Consensus 261 ---~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ---ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp ---HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred ---HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1222221 378999999954321 224567888888754
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.44 E-value=2e-16 Score=172.49 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=119.8
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCC--ccHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFN--CSIE 463 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~--~TIr 463 (616)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--.++. ++.+.++.|... .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 46889999999999999999999999999999999999999999999865322221 346778888765 33 3777
Q ss_pred HHHhcC---CC-----CCCCHHHHHHHHHHcC-------------chHHHH---cCCCccccccc-------CCCCCCCh
Q 007152 464 ENIAYG---CD-----GKASSADIENAAKMAN-------------AHDFIS---NFPEKYQTFVG-------ERGVRLSG 512 (616)
Q Consensus 464 eNi~~g---~~-----~~~~~~~i~~al~~a~-------------l~~~i~---~Lp~GldT~vg-------e~G~~LSG 512 (616)
+++... +| ++..+.|...+++.+. ..+.+. ..|.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 776432 22 1345555555555542 112222 22333332222 23446899
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEE--EecCchhhh-hcC
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLV--IAHRLSTVQ-SAD 575 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~--ItHrl~~l~-~aD 575 (616)
||+||.++|. + | |++||+++.+.+.+.+.++. .++|+++ +||.++.+. .|+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999987751 1 6 99999988777777666554 3678875 899999775 354
No 139
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.44 E-value=1.1e-13 Score=146.24 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=97.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHH--HHHcCCCCCCC-----EEEECCEeC-CCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 394 KLLSGSKIALVGPSGGGKSTIAN--LIERFYDPIKG-----KILLNGVPL-VEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~--lL~g~~~~~~G-----~I~idg~~i-~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
-|++|++++|+||||||||||++ ++.+..+++.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999 44577766444 889988652 11123334556776665 67788
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCcCCCCCHH
Q 007152 466 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAE 543 (616)
Q Consensus 466 i~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--~~p~iliLDEpTSaLD~~ 543 (616)
+.+..+ .+.++..+.+ .-++.++ .+|+++++||||+.+|++
T Consensus 247 i~~~~~--~~~~~~~~~l-----------------------------------~~~~~~l~~~~~~llVIDs~t~~~~~~ 289 (400)
T 3lda_A 247 VAYARA--YNADHQLRLL-----------------------------------DAAAQMMSESRFSLIVVDSVMALYRTD 289 (400)
T ss_dssp EEEEEC--CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred EEEecc--CChHHHHHHH-----------------------------------HHHHHHHHhcCCceEEecchhhhCchh
Confidence 877643 2332222222 2222222 479999999999999976
Q ss_pred HH------------HHHHHHHHHHh--CCCeEEEEecCch-------------------hhhh-cCEEEEEeCCE
Q 007152 544 SE------------YLVQDAMDSLM--KGRTVLVIAHRLS-------------------TVQS-ADTVAVVSDGE 584 (616)
Q Consensus 544 te------------~~i~~~l~~~~--~~~T~I~ItHrl~-------------------~l~~-aD~Iivl~~G~ 584 (616)
.. ..+.+.|+++. .+.|+|+|+|-.. .+.+ +|.+++|+.|+
T Consensus 290 ~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 290 FSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 43 45666666653 3789999999832 2333 79999998763
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.40 E-value=2.7e-13 Score=123.68 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=69.9
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC--EEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G--~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 57 565555332110
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHH
Q 007152 465 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 544 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~t 544 (616)
+++.+|++|+||||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 2467899999999998 66655
Q ss_pred HHHHHHHHHHHh-CCCe-EEEEecCc
Q 007152 545 EYLVQDAMDSLM-KGRT-VLVIAHRL 568 (616)
Q Consensus 545 e~~i~~~l~~~~-~~~T-~I~ItHrl 568 (616)
++.+.+.+.+.. +++| +|++||+.
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 888888887655 4577 77777753
No 141
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=7.4e-14 Score=142.77 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=83.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEE---CCEeCCCCCHHHHh-cccEEEccCCCcC------CccH
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL---NGVPLVEISHEHLH-RKISIVSQEPVLF------NCSI 462 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~i---dg~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~TI 462 (616)
+++.+|++++++|+||||||||+|+|+ +.+|.+|+|.+ +|.++..... ..+ +.++||+|+|.+. +-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 455689999999999999999999999 99999999999 9988876442 223 3799999999653 4578
Q ss_pred HHHH--hcC---------C---CCCCCHHHHHHHHHHcCchH-HHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 463 EENI--AYG---------C---DGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 463 reNi--~~g---------~---~~~~~~~~i~~al~~a~l~~-~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
||+ .|+ . +.....+.+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 0 11112456889999998875 444443 458998888999987
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.34 E-value=3.9e-13 Score=126.59 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=75.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCE-EEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGK-ILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 470 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~-I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~ 470 (616)
+|++++|+.++|+||+|+|||||++.+++.+.|.+|. +.+ + +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------------------~---------~~~~~~---- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------------------F---------DTKDLI---- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------------------E---------EHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------------------E---------EHHHHH----
Confidence 4678899999999999999999999999998776663 211 0 111111
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC-CCCHHHHHHHH
Q 007152 471 DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS-ALDAESEYLVQ 549 (616)
Q Consensus 471 ~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS-aLD~~te~~i~ 549 (616)
+++...... + .. + -+...+.+|++|+||||++ ++|+.....+.
T Consensus 80 ------~~~~~~~~~------------~--------~~-------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~ 123 (180)
T 3ec2_A 80 ------FRLKHLMDE------------G--------KD-------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELIS 123 (180)
T ss_dssp ------HHHHHHHHH------------T--------CC-------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHH
T ss_pred ------HHHHHHhcC------------c--------hH-------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHH
Confidence 011111100 0 00 0 1122245999999999996 89999998888
Q ss_pred HHHHHHh-CCCeEEEEecCch
Q 007152 550 DAMDSLM-KGRTVLVIAHRLS 569 (616)
Q Consensus 550 ~~l~~~~-~~~T~I~ItHrl~ 569 (616)
+.+.... +++++|++||...
T Consensus 124 ~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 124 YIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHcCCCEEEEcCCCh
Confidence 8887665 6899999999874
No 143
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.33 E-value=1.7e-15 Score=148.98 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=63.7
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHH-cCC------------CCCCCEEEECCEeCCCCCHHHHhcccEEEc
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIE-RFY------------DPIKGKILLNGVPLVEISHEHLHRKISIVS 452 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~-g~~------------~~~~G~I~idg~~i~~~~~~~~r~~i~~v~ 452 (616)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 6666655 5554444444444332 22
Q ss_pred cCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcC-CCcccccccCCCCCCChhHHHHH-HHHH-HHccCCC
Q 007152 453 QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF-PEKYQTFVGERGVRLSGGQKQRV-AIAR-ALMMNPR 529 (616)
Q Consensus 453 Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~L-p~GldT~vge~G~~LSGGQrQRl-alAR-All~~p~ 529 (616)
++..++..++.+|+ ++.+ .+++.++++.... .+-.+ +.|. ..-+++. .-++ .++..|+
T Consensus 90 ~~~~~~~~~~~~~~-~~~~----~~~i~~~~~~~~~--vild~~~~g~------------~~~~~~~~~~~~~v~v~~~~ 150 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVP----RKNLEDNVDKGVS--TLLVIDWQGA------------FKFMEMMREHVVSIFIMPPS 150 (231)
T ss_dssp TTCEEEEEEETTEE-EEEE----CTTHHHHHHHTCE--EEEECCHHHH------------HHHHHHSGGGEEEEEEECSC
T ss_pred cCceehhhhhcccc-CCCC----HHHHHHHHHcCCe--EEEEcCHHHH------------HHHHHhcCCCeEEEEEECCc
Confidence 33344444444443 3332 1234444443211 11111 1111 1113443 2222 3456778
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHH
Q 007152 530 ILLLDEATSALDAESEYLVQDAMDSL 555 (616)
Q Consensus 530 iliLDEpTSaLD~~te~~i~~~l~~~ 555 (616)
..++||++++.|..++..+.+.|.+.
T Consensus 151 ~~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 151 MEELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHHHC--------------CHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 88889999999999888887777543
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.33 E-value=2.4e-15 Score=151.68 Aligned_cols=143 Identities=17% Similarity=0.221 Sum_probs=105.7
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC-CcCC-ccHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP-VLFN-CSIE 463 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~TIr 463 (616)
.+++++++++++| ++|+||+|||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999887 89999999887766666778899999986 3443 3677
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC-----
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS----- 538 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS----- 538 (616)
||+....+ ..+..+. ....+.+..+ -..|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~-~r~~~~~------~~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 110 DEVDALCP-RRSDRET------GASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp ETCTTTCC----------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred ehhhhhhc-ccCCCcc------hHHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 88876533 1111110 0011222222 2358999999999999999999975 99975
Q ss_pred -------CCCHHHHHHHHHHH
Q 007152 539 -------ALDAESEYLVQDAM 552 (616)
Q Consensus 539 -------aLD~~te~~i~~~l 552 (616)
--|.+....|++.+
T Consensus 170 d~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHH
Confidence 23677777777665
No 145
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.27 E-value=5.2e-14 Score=137.64 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=105.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC---CCCCCEEEE--------CCEeCC-CCCHHHHhcccEEEccCC------CcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY---DPIKGKILL--------NGVPLV-EISHEHLHRKISIVSQEP------VLF 458 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~---~~~~G~I~i--------dg~~i~-~~~~~~~r~~i~~v~Q~~------~lf 458 (616)
.+..++|+|++||||||++++|.+.| .++.|++.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788899987 787775 355678899999999986 556
Q ss_pred CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEEeCcC
Q 007152 459 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 537 (616)
Q Consensus 459 ~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vg-e~G~~LSGGQrQRlalARAll~~p~iliLDEpT 537 (616)
..++.+++. ++++.+++..+..++.+...+.+..+.+. ++|.-++|+ .++++++++++++|+.+++
T Consensus 84 ~~~v~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR--------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT--------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC--------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 667777763 45788999999999999988777777663 567788887 5677888999999998875
Q ss_pred C
Q 007152 538 S 538 (616)
Q Consensus 538 S 538 (616)
.
T Consensus 151 ~ 151 (227)
T 1cke_A 151 S 151 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.25 E-value=1e-12 Score=139.35 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=95.3
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHh
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 467 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~ 467 (616)
-++++|++++|+.++|||++|||||||++.|++..+ .+.+.+... +...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999843 344444333 3345777777651 1123333322
Q ss_pred cCCC----CCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 468 YGCD----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 468 ~g~~----~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
+... ...... ..+..+.+. ..+..+. .. .+.-.+||+||+||.++||++..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~vvD--ls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYVLD--AA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEEEE--TT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEEeC--Cc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2100 011111 112122121 1111110 00 112236999999999999999999999999 999988
Q ss_pred HHHHHHHHHHHHh--CCCeEEEEecC
Q 007152 544 SEYLVQDAMDSLM--KGRTVLVIAHR 567 (616)
Q Consensus 544 te~~i~~~l~~~~--~~~T~I~ItHr 567 (616)
++ ...+.+.+.. .+.+++.||..
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECC
Confidence 66 3444444332 35688877643
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.20 E-value=1.2e-11 Score=125.93 Aligned_cols=142 Identities=17% Similarity=0.119 Sum_probs=100.2
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
+.++++++.|+.. . ++++|+ +|+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 5667788888532 1 678888 9999999999999999999999999999999999988776431110
Q ss_pred EEccCCCcCCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCC
Q 007152 450 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 529 (616)
Q Consensus 450 ~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~ 529 (616)
+++....+..++. -+|.| ..-...+.||.+|+++...++|
T Consensus 143 ---------------------------~ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 143 ---------------------------EQLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp ---------------------------HHHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHTCC
T ss_pred ---------------------------HHHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCCCC
Confidence 0111111111211 11111 1123445689999999889999
Q ss_pred EEEEeCc-CCCCCHHHHHHHHHHHHHHhCCCeEEEEe
Q 007152 530 ILLLDEA-TSALDAESEYLVQDAMDSLMKGRTVLVIA 565 (616)
Q Consensus 530 iliLDEp-TSaLD~~te~~i~~~l~~~~~~~T~I~It 565 (616)
++|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 183 ~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 183 LILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999 99999988878777776666666665554
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=2.2e-12 Score=131.83 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=71.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEE---CCEeCCCCCHHHHhcccEEEccCCC-------------
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL---NGVPLVEISHEHLHRKISIVSQEPV------------- 456 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~i---dg~~i~~~~~~~~r~~i~~v~Q~~~------------- 456 (616)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9998876552211246999999985
Q ss_pred ---cCC-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCch-HHHHcCCC
Q 007152 457 ---LFN-CSIEENIAYGCD--GKASSADIENAAKMANAH-DFISNFPE 497 (616)
Q Consensus 457 ---lf~-~TIreNi~~g~~--~~~~~~~i~~al~~a~l~-~~i~~Lp~ 497 (616)
+|. -|+ +|+.|+.- ....+.++.++++..+|. +..++.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 343 478 99988531 012345789999999994 66666553
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.17 E-value=3.8e-13 Score=137.97 Aligned_cols=91 Identities=14% Similarity=0.260 Sum_probs=75.4
Q ss_pred CcEEEEeEEEECCCCCCCcceeceeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHHcCCC--CCC
Q 007152 368 GEVELDDVWFAYPSRPNHMVLKGITLKL-------------------LSGSKIALVGPSGGGKSTIANLIERFYD--PIK 426 (616)
Q Consensus 368 ~~I~~~~vsf~Y~~~~~~~vL~~isl~I-------------------~~G~~vaIvG~sGsGKSTL~~lL~g~~~--~~~ 426 (616)
+.|+++||++.|. ++++++++.+ ++|+++||+|+||||||||+++|+|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999993 6899999988 9999999999999999999999999998 999
Q ss_pred CEEEE---CCEeCCCCCHHHHhcccEEEccCCCcC-CccHHHHHhc
Q 007152 427 GKILL---NGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAY 468 (616)
Q Consensus 427 G~I~i---dg~~i~~~~~~~~r~~i~~v~Q~~~lf-~~TIreNi~~ 468 (616)
|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 99999 997742 2456778888 765543 3366666654
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.17 E-value=3.3e-11 Score=122.78 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=73.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC
Q 007152 391 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 470 (616)
Q Consensus 391 isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~ 470 (616)
+++..++|+.++|+|++||||||+++.|++.+.+..|+|.+.+.|... . ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~-------------------~a-------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--A-------------------AA-------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--H-------------------HH--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--H-------------------HH--------
Confidence 445567899999999999999999999999999998999887766421 0 00
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH---HHHHHHccCCCEEEEeCcCC
Q 007152 471 DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV---AIARALMMNPRILLLDEATS 538 (616)
Q Consensus 471 ~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl---alARAll~~p~iliLDEpTS 538 (616)
.+++...++..++. . + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 148 -----~eqL~~~~~~~gl~-----------~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 -----IEQLKIWGERVGAT-----------V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHHTCE-----------E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHHcCCc-----------E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12233333333321 1 1 13579999999 99999999999999999985
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.15 E-value=2.8e-11 Score=116.03 Aligned_cols=154 Identities=13% Similarity=0.122 Sum_probs=95.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHHHHHhcCC
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEENIAYGC 470 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIreNi~~g~ 470 (616)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57789999999999999999999999999974 588888888766655667889999999988764 4455543321
Q ss_pred C-----CCCCHHHHHHHHHHc----------CchHHHHcCCCc------------ccccccCCCCCCChhHHHHHHHHHH
Q 007152 471 D-----GKASSADIENAAKMA----------NAHDFISNFPEK------------YQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 471 ~-----~~~~~~~i~~al~~a----------~l~~~i~~Lp~G------------ldT~vge~G~~LSGGQrQRlalARA 523 (616)
. .....+++.++++.. ++.......|+. +...+-++|..-....++|+.-++.
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~ 156 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALARE 156 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0 011234555555442 111222233332 1122334555555667888888877
Q ss_pred Hc---cCCCEEEEeCcCCCCCHH-HHHHHHHHHHH
Q 007152 524 LM---MNPRILLLDEATSALDAE-SEYLVQDAMDS 554 (616)
Q Consensus 524 ll---~~p~iliLDEpTSaLD~~-te~~i~~~l~~ 554 (616)
.. +.++.+|.++ |.+ +.+.+.+.|..
T Consensus 157 ~~~~~~~~d~vi~n~-----~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 157 EMAHYKEFDYLVVND-----NFDQAVQNLIHIISA 186 (205)
T ss_dssp HHTTGGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred HHhcccCCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 65 3467777654 343 44555555543
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.14 E-value=2.5e-12 Score=128.06 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=82.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH---cCCCCCCCEEE--------ECCEeC-CCCCHHHHhcccEEEccC------CCc
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIE---RFYDPIKGKIL--------LNGVPL-VEISHEHLHRKISIVSQE------PVL 457 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~---g~~~~~~G~I~--------idg~~i-~~~~~~~~r~~i~~v~Q~------~~l 457 (616)
++|++++|+|+|||||||++++|+ |++.|++|.+. .+|.++ .......+++.+++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 999998 456688999999999954 567
Q ss_pred CCccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCC
Q 007152 458 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGER 506 (616)
Q Consensus 458 f~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~ 506 (616)
+..++.+||. .+++..++..+..++.|......+...++++
T Consensus 105 ~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~ 145 (252)
T 4e22_A 105 EGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAFREA 145 (252)
T ss_dssp TTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCS
T ss_pred CCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhC
Confidence 7788888874 2356667777777777766555554445443
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.13 E-value=1.5e-11 Score=116.46 Aligned_cols=128 Identities=21% Similarity=0.320 Sum_probs=68.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC-------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYD-------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~-------------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 888886 89888877877777654 3666777777777
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcC---c------hHHHHc--------------CCCcccccccCCCCCCChhHHHHHHHH
Q 007152 465 NIAYGCDGKASSADIENAAKMAN---A------HDFISN--------------FPEKYQTFVGERGVRLSGGQKQRVAIA 521 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~a~---l------~~~i~~--------------Lp~GldT~vge~G~~LSGGQrQRlalA 521 (616)
|+ +|.+ .+++.++++... + ...+.. -++-+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~----~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST----VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE----HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc----HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 75 5532 334444444311 1 001111 124666677788888778889999999
Q ss_pred HHHc-----cCCCEEEEeC
Q 007152 522 RALM-----MNPRILLLDE 535 (616)
Q Consensus 522 RAll-----~~p~iliLDE 535 (616)
+.-+ +.+|.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 9865 5678877765
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.11 E-value=6.3e-11 Score=120.42 Aligned_cols=138 Identities=15% Similarity=0.223 Sum_probs=91.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKAS 475 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~ 475 (616)
++|+.++++|++||||||++..|++.+.+.+| +++.++.+|++ ..+..|++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL--------- 153 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQL--------- 153 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHH---------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHH---------
Confidence 47999999999999999999999999988778 25778888873 33333333
Q ss_pred HHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 007152 476 SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 555 (616)
Q Consensus 476 ~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~ 555 (616)
....+..++ | -... .+ ++..+.+++++ ++|+++|+| |+++|+..+..+.+...-.
T Consensus 154 ----~~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 154 ----KTYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp ----HHHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred ----HHHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 222222222 1 1111 12 34457778764 999999999 9999987665554433222
Q ss_pred h---CCCeEEEE--ecCchhhhh-cCEEEEEeCCEEEE
Q 007152 556 M---KGRTVLVI--AHRLSTVQS-ADTVAVVSDGEIVE 587 (616)
Q Consensus 556 ~---~~~T~I~I--tHrl~~l~~-aD~Iivl~~G~Ive 587 (616)
. .+.+++++ +|....+.. +|++-.++.|.++-
T Consensus 209 ~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 1 23456666 898776654 77766667777765
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.11 E-value=2e-11 Score=131.07 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=51.5
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH 441 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~ 441 (616)
++|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 479999999999 9999999999999999999999999999999999999876553
No 156
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.09 E-value=7.5e-12 Score=127.26 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=58.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEE---CCEeCCCCCHHHHhcccEEEccCCCcCC-----ccHHH
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL---NGVPLVEISHEHLHRKISIVSQEPVLFN-----CSIEE 464 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~i---dg~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~TIre 464 (616)
+++.+|++++|+|+||||||||+|+|+|+..|..|+|.+ +|.+..... ..++..++|++|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 888776543 222223899999997754 478 9
Q ss_pred HHh--cC-------------C-CCCCCHHHHHHHHHHcCchHH
Q 007152 465 NIA--YG-------------C-DGKASSADIENAAKMANAHDF 491 (616)
Q Consensus 465 Ni~--~g-------------~-~~~~~~~~i~~al~~a~l~~~ 491 (616)
|+. |. + ........+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 993 21 0 001123568888888888653
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=8.8e-14 Score=144.53 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=98.0
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCC-------CEEEEECCCCCcHHHHHHHHHcCC----CCCCCEEEECCEeCCC
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSG-------SKIALVGPSGGGKSTIANLIERFY----DPIKGKILLNGVPLVE 438 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G-------~~vaIvG~sGsGKSTL~~lL~g~~----~~~~G~I~idg~~i~~ 438 (616)
++.++++..|.. ..+++++++.+++| +.++|+||+|+|||||+++++|.+ .|.+|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 334455555542 35899999999887 899999999999999999999998 6778888777665533
Q ss_pred CCHHHHhcccEEEccCCCcCCccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHHcCCC-cccccccCCCCCCCh
Q 007152 439 ISHEHLHRKISIVSQEPVLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPE-KYQTFVGERGVRLSG 512 (616)
Q Consensus 439 ~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~-~~~~----~~~i~~al~~a~l~~~i~~Lp~-GldT~vge~G~~LSG 512 (616)
+.....+..|.+++|...++. |+.|++...-. ...+ ..+-.+.++ ..+|. ++.. ....-..||+
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~--------~~l~~~~li~-at~~~~~Ls~ 165 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIR--------IDIQPFTLVG-ATTRSGLLSS 165 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccccc--------ccCCCeEEEE-ecCCcccCCH
Confidence 211112457999999887765 88888753210 0000 000000000 01111 1111 1122347999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 007152 513 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 513 GQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~ 556 (616)
|+|||++++ ..||+.+...+.+.|++..
T Consensus 166 ~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 166 PLRSRFGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HHHTTCSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 999998665 6677777777777776543
No 158
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.04 E-value=2.5e-11 Score=115.19 Aligned_cols=84 Identities=27% Similarity=0.334 Sum_probs=69.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIERFYD-------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF 458 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~-------------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf 458 (616)
|+...+|+.++|+||||||||||++.|++.++ |..|+ +||+++.-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34556899999999999999999999999986 77888 699999999999999876 6999999
Q ss_pred CccHHHHHhcCCCCCCCHHHHHHHHHH
Q 007152 459 NCSIEENIAYGCDGKASSADIENAAKM 485 (616)
Q Consensus 459 ~~TIreNi~~g~~~~~~~~~i~~al~~ 485 (616)
.+++.+| .||.+ .+.+.++++.
T Consensus 88 ~~~~~~n-~YGt~----~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGN-MFGTK----FETVHQIHKQ 109 (197)
T ss_dssp EEEETTE-EEEEE----HHHHHHHHHT
T ss_pred hhhhhce-ecccc----hhhHHHHHhc
Confidence 9999999 48854 4456665554
No 159
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.98 E-value=7.4e-13 Score=139.13 Aligned_cols=168 Identities=15% Similarity=0.170 Sum_probs=109.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc------------CCCCCCCEEEECCEeCCCCCH-HHHhcc---cEEEccCCCc
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIER------------FYDPIKGKILLNGVPLVEISH-EHLHRK---ISIVSQEPVL 457 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g------------~~~~~~G~I~idg~~i~~~~~-~~~r~~---i~~v~Q~~~l 457 (616)
++++|.+++|||++|+|||||++.|+| ..+|+.|.+.++|..+..+.. ..-++. ..++.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567999999999999999999999999 678999999998843221110 000111 2356666666
Q ss_pred CCc-cHHHHHhcCCCCCCCHHHHHHHHHHcCch-HHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCC--CEEEE
Q 007152 458 FNC-SIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP--RILLL 533 (616)
Q Consensus 458 f~~-TIreNi~~g~~~~~~~~~i~~al~~a~l~-~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p--~iliL 533 (616)
..+ |..+++ . .++...++.+..- ..++... + ..-..+||+ .+| ++.++
T Consensus 96 ~~~~s~~e~L--------~-~~fl~~ir~~d~il~Vvd~~~---d----~~i~~v~~~------------~dP~~di~il 147 (392)
T 1ni3_A 96 TKGASTGVGL--------G-NAFLSHVRAVDAIYQVVRAFD---D----AEIIHVEGD------------VDPIRDLSII 147 (392)
T ss_dssp CCCCCSSSSS--------C-HHHHHHHTTCSEEEEEEECCC---T----TCSSCCSSS------------SCHHHHHHHH
T ss_pred ccCCcHHHHH--------H-HHHHHHHHHHHHHHHHHhccc---c----ceeeeeccc------------cCcchhhhhc
Confidence 543 222221 1 1233333333221 1111111 1 122335665 289 99999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHH-hC-CCeEEEEecCchhhh-hcCEEE-EEeCC-EEEEecCh
Q 007152 534 DEATSALDAESEYLVQDAMDSL-MK-GRTVLVIAHRLSTVQ-SADTVA-VVSDG-EIVESGTH 591 (616)
Q Consensus 534 DEpTSaLD~~te~~i~~~l~~~-~~-~~T~I~ItHrl~~l~-~aD~Ii-vl~~G-~Ive~G~~ 591 (616)
|||++.+|+++-+...+.+... .+ ++|+ ++|.+..+. .||++. +|++| +++..|+.
T Consensus 148 deel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 148 VDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999988888888776 43 4554 399998764 599999 89999 88766653
No 160
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.98 E-value=2.1e-11 Score=131.93 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=97.8
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCCEEEECCEeCCCCCHHHHhc--cc-EEEccCCCcCCccHHH
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIER--FYDPIKGKILLNGVPLVEISHEHLHR--KI-SIVSQEPVLFNCSIEE 464 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g--~~~~~~G~I~idg~~i~~~~~~~~r~--~i-~~v~Q~~~lf~~TIre 464 (616)
.+++++.+|.++.|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. ++ +.|-+|+. -..+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 3778889999999999999999999999876 67777798988888887654444331 11 11111110 0122
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHH----------HHHHHHccCCC-EEEE
Q 007152 465 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV----------AIARALMMNPR-ILLL 533 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRl----------alARAll~~p~-iliL 533 (616)
.+..... + -+++ .+.++..|+.++- +|+..+. ..+||||+||. ++|+++-..|. ++++
T Consensus 235 ~L~~~~~-E-merR-~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 235 ALRWCVN-E-MERR-YKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHH-H-HHHH-HHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHH-H-HHHH-HHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 2221100 0 0111 2344444443321 1221111 23678887752 36777778898 7889
Q ss_pred eCcCCCCCHHHHHHHHHHHHHH---h--CCCeEEEEecCch
Q 007152 534 DEATSALDAESEYLVQDAMDSL---M--KGRTVLVIAHRLS 569 (616)
Q Consensus 534 DEpTSaLD~~te~~i~~~l~~~---~--~~~T~I~ItHrl~ 569 (616)
||+++.+|... ..+.+.+.++ . .|.++|++|||++
T Consensus 304 DE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 304 DEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp ETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred eCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999998432 3344444332 2 2679999999998
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.98 E-value=1.1e-12 Score=132.53 Aligned_cols=138 Identities=21% Similarity=0.251 Sum_probs=98.0
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|++... .|.|.+++.++.+......++.+.+
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3556666663 235899999999999 99999999999999999999885 7999999987755555556677888
Q ss_pred EccCCC-cCC-ccHHHHH-hcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 451 VSQEPV-LFN-CSIEENI-AYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 451 v~Q~~~-lf~-~TIreNi-~~g~~~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
++|++. .+. -++.||+ .++..... ..++..+.+. .++ ..|||||+||..+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEEE
Confidence 999874 343 4677888 34321110 1112222221 121 2478999999999999
Q ss_pred HccCCCEEEEeCcC
Q 007152 524 LMMNPRILLLDEAT 537 (616)
Q Consensus 524 ll~~p~iliLDEpT 537 (616)
+..+|++ ||++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 67764
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.97 E-value=4.3e-09 Score=103.56 Aligned_cols=167 Identities=11% Similarity=0.092 Sum_probs=91.5
Q ss_pred cceece-eEEEeCCCEEEEECCCCCcHHHHHH-HHHcCCCCCCCEEEECCEeCCCCCHHHHh---cccEEEccCCCcCCc
Q 007152 386 MVLKGI-TLKLLSGSKIALVGPSGGGKSTIAN-LIERFYDPIKGKILLNGVPLVEISHEHLH---RKISIVSQEPVLFNC 460 (616)
Q Consensus 386 ~vL~~i-sl~I~~G~~vaIvG~sGsGKSTL~~-lL~g~~~~~~G~I~idg~~i~~~~~~~~r---~~i~~v~Q~~~lf~~ 460 (616)
+.|+++ .--+++|+.++|.|++|||||||+. ++.+..++..+.+++++. .+.++++ +.+++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e----~~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE----EHPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS----SCHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHcCCCHHHHhh---
Confidence 346665 5679999999999999999999955 545555444455555542 2333332 234444443210
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCcCC
Q 007152 461 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATS 538 (616)
Q Consensus 461 TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--~~p~iliLDEpTS 538 (616)
.+|+.+... .. + .+..++. .+..+-+. +....+.+..++.++ .+|+++++|++++
T Consensus 83 --~~~l~~~~~--~~-~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 --KGMFAMVDA--FT-A-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp --HTSEEEEEC--ST-T-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred --CCcEEEEec--ch-h-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 012221110 00 0 0000000 00001111 122334444455554 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHHh--CCCeEEEEecCchh---------hhhcCEEEEEeC
Q 007152 539 AL--DAESEYLVQDAMDSLM--KGRTVLVIAHRLST---------VQSADTVAVVSD 582 (616)
Q Consensus 539 aL--D~~te~~i~~~l~~~~--~~~T~I~ItHrl~~---------l~~aD~Iivl~~ 582 (616)
-+ |+.....+...+.+.. .+.|+|+++|.... ...||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 5544445555554432 47899999998764 356899999964
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.94 E-value=9e-11 Score=111.39 Aligned_cols=142 Identities=20% Similarity=0.150 Sum_probs=77.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC-----------CCCEEEECCEeCCC--CCHHHHhcccEEEccCCCcCCc--cHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDP-----------IKGKILLNGVPLVE--ISHEHLHRKISIVSQEPVLFNC--SIEE 464 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~-----------~~G~I~idg~~i~~--~~~~~~r~~i~~v~Q~~~lf~~--TIre 464 (616)
+++|+|++|||||||++.++|...+ ++|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57899999976531 1211122223333332111000 1111
Q ss_pred HHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH
Q 007152 465 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 543 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~Gld-T~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~ 543 (616)
+... .+.+++...++.. . ..-+.... -.++.. ..|..-..+...+||++..+|+++++| |||+|.+
T Consensus 111 ~~~~-----~s~~~~~~~~~~~--~---~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH-----LTYENVERWLKEL--R---DHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH-----HHHHTHHHHHHHH--H---HHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH-----HHHHHHHHHHHHH--H---HhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1100 0011111111100 0 00000000 011111 112221223478899999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 007152 544 SEYLVQDAMDS 554 (616)
Q Consensus 544 te~~i~~~l~~ 554 (616)
+...+.+.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99888888765
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.93 E-value=1.3e-12 Score=130.16 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=99.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccE
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKIS 449 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~ 449 (616)
.+++++.+.|.. ..+++++++++++| ++|+||+|||||||++++++... .|.+.++|.++.+......++.+.
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456777766642 35899999999999 99999999999999999999875 799999998775554455567788
Q ss_pred EEccCCC-cCC-ccHHHHH-hcCCCCCC----CHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHH
Q 007152 450 IVSQEPV-LFN-CSIEENI-AYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 522 (616)
Q Consensus 450 ~v~Q~~~-lf~-~TIreNi-~~g~~~~~----~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalAR 522 (616)
+++|+.. .+. -++.||+ .++..... ..++..+.+. .++ ..|||||+||..+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH-----HHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEE
Confidence 8898864 333 4667777 44321110 1112222211 111 247899999999999
Q ss_pred HHccCCCEEEEeCcCC
Q 007152 523 ALMMNPRILLLDEATS 538 (616)
Q Consensus 523 All~~p~iliLDEpTS 538 (616)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788764
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.92 E-value=3.9e-09 Score=109.71 Aligned_cols=143 Identities=20% Similarity=0.271 Sum_probs=84.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE-EECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-LLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDG 472 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I-~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~ 472 (616)
-+++|+.+.|.|++|||||||+..++.......|.+ +++... ..+. .+.+.+++-+|+. .+..|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l-----------~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSL-----------LVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGC-----------EEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHe-----------EEecC-
Confidence 588999999999999999999888776554444433 333311 1111 1111222221111 11111
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEEeCcCCCC----------
Q 007152 473 KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSAL---------- 540 (616)
Q Consensus 473 ~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~--p~iliLDEpTSaL---------- 540 (616)
.++ .|-+.+++++.++ |+++|+||+++-+
T Consensus 122 -------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 122 -------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp -------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred -------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 011 2345578888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH-----hCCCeEEEEecCch----------------hh-hhcCEEEEEeCCEEEEecC
Q 007152 541 DA---ESEYLVQDAMDSL-----MKGRTVLVIAHRLS----------------TV-QSADTVAVVSDGEIVESGT 590 (616)
Q Consensus 541 D~---~te~~i~~~l~~~-----~~~~T~I~ItHrl~----------------~l-~~aD~Iivl~~G~Ive~G~ 590 (616)
|+ ..++.+.+.++++ ..+.|+|+++|-.. .+ ..||.++.++.+++...|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1222333444333 23889999999543 14 3589999998877655554
No 166
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.92 E-value=9.5e-11 Score=110.27 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=64.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEE----------ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKIL----------LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~----------idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||.++..++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37999999999999999999999999874 445553 47777777888888774 57899999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHH
Q 007152 465 NIAYGCDGKASSADIENAAKM 485 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~~ 485 (616)
| .+|.+ .+.++++++.
T Consensus 80 n-~yg~~----~~~i~~~l~~ 95 (180)
T 1kgd_A 80 A-MYGTK----LETIRKIHEQ 95 (180)
T ss_dssp E-EEEEE----HHHHHHHHHT
T ss_pred c-ccccc----HHHHHHHHHC
Confidence 9 56633 4556666653
No 167
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.90 E-value=3.1e-11 Score=117.44 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=51.7
Q ss_pred cEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH-------
Q 007152 369 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH------- 441 (616)
Q Consensus 369 ~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~------- 441 (616)
.++++|++..|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 588888865442 1 456666 8999999999999999999999999999999999998844332
Q ss_pred -HHHhcccEEEccC
Q 007152 442 -EHLHRKISIVSQE 454 (616)
Q Consensus 442 -~~~r~~i~~v~Q~ 454 (616)
...+..++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999984
No 168
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.87 E-value=9.3e-10 Score=124.18 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=66.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhc
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAY 468 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~ 468 (616)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 457889999999999999999999999987665 77999 79999999999999999999999999998888888753
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.85 E-value=2.5e-09 Score=115.56 Aligned_cols=177 Identities=15% Similarity=0.174 Sum_probs=111.9
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC-EEEECCEeCCCCCHHHHhccc-EEEccCCCcCCccHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNGVPLVEISHEHLHRKI-SIVSQEPVLFNCSIE 463 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~I~idg~~i~~~~~~~~r~~i-~~v~Q~~~lf~~TIr 463 (616)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .+.+.+. +.+.+++++++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 468888878999999999999999999999999988776555 5666543 34555555442 1111100 1
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCcCCCCC
Q 007152 464 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALD 541 (616)
Q Consensus 464 eNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--~~p~iliLDEpTSaLD 541 (616)
+.+.-| ..++++...+.+.+ +.+...|- .+-+ ...+|++|.+ +.||.+. .+|+++|+|+++.-.+
T Consensus 261 ~~l~~g---~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 261 QNLRTG---KLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHTS---CCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHhcC---CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 223323 34555554433332 12332221 1111 2468999876 6778776 5799999999999774
Q ss_pred HH--------HHHHHHHHHHHHh--CCCeEEEEec---------C--ch--------hh-hhcCEEEEEeCCEE
Q 007152 542 AE--------SEYLVQDAMDSLM--KGRTVLVIAH---------R--LS--------TV-QSADTVAVVSDGEI 585 (616)
Q Consensus 542 ~~--------te~~i~~~l~~~~--~~~T~I~ItH---------r--l~--------~l-~~aD~Iivl~~G~I 585 (616)
.. .-..+.+.|+.+. .+.|+|+++| . +. .+ ..||.|++|+.++.
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 31 2245555665543 3789999999 1 32 23 45999999986654
No 170
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.85 E-value=8.3e-11 Score=131.72 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=104.0
Q ss_pred CcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-CEEEECCEeCCCCCHHHHhcccEEEccCC--------
Q 007152 385 HMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIK-GKILLNGVPLVEISHEHLHRKISIVSQEP-------- 455 (616)
Q Consensus 385 ~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~-G~I~idg~~i~~~~~~~~r~~i~~v~Q~~-------- 455 (616)
..+++++++.+++|+.+.|+||+|+|||||++.|++++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 368999999999999999999999999999999999999987 8888888766543 34588887754
Q ss_pred --------------CcC-CccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHH
Q 007152 456 --------------VLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 520 (616)
Q Consensus 456 --------------~lf-~~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlal 520 (616)
+.| ..++.+|+..++. ......+... ......+++..+. .. ......+|+|++|++..
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~-~~~~~~~L~G~~~----~~-~~~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDA-TGAHAGALLGDVR----HD-PFQSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEEC-TTCCHHHHHCEEC----CC-CC----CCCCGGGGEEC
T ss_pred HHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEc-CCCCHHhcCceEE----ec-hhhcCCccccccccccC
Confidence 222 2244444443321 0000000000 0001111111110 00 01123599999999999
Q ss_pred HHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 007152 521 ARALMMNPRILLLDEATSALDAESEYLVQDAMDS 554 (616)
Q Consensus 521 ARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~ 554 (616)
++....++.+|+|||... |++.....+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999998 799999999998874
No 171
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.81 E-value=3.4e-11 Score=126.08 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=88.2
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
.+++++++.+++|+.++|+||+|||||||+++|+|.+ +|.+..-+ . +.+.++..+++++|...+ +.|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~----l~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLV----VFED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCE----EETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHH----HHHH
Confidence 5799999999999999999999999999999999964 68776511 1 122334458889998764 2344
Q ss_pred HhcCCC---C--CCC----HHHHHHHHHH---cCch----HHHH-cCCCcccccccCCCCCCChhHHHHHHHHHHHccCC
Q 007152 466 IAYGCD---G--KAS----SADIENAAKM---ANAH----DFIS-NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 528 (616)
Q Consensus 466 i~~g~~---~--~~~----~~~i~~al~~---a~l~----~~i~-~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p 528 (616)
+....+ . ..+ +..+.+.+.- +.+. +.+. -+|.| .+..+-..+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443321 0 001 0112222210 0000 0000 01111 233445668999999999998999999
Q ss_pred CEEE-EeCcCC
Q 007152 529 RILL-LDEATS 538 (616)
Q Consensus 529 ~ili-LDEpTS 538 (616)
++++ ||+|++
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9998 999997
No 172
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.79 E-value=4.9e-10 Score=107.75 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=46.1
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCC
Q 007152 391 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGC 470 (616)
Q Consensus 391 isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~ 470 (616)
+-=++++|+.++|+|++||||||+++.|.+.++ .+.+++||++++++ +|+.++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 334688999999999999999999999999875 48999999999986 6776654
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=8.8e-10 Score=106.17 Aligned_cols=81 Identities=26% Similarity=0.268 Sum_probs=61.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEEE----------ECCEeCCCCCHHHHhcccEEEccCCCcCCccHHH
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKIL----------LNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEE 464 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I~----------idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIre 464 (616)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|+++...+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999986 333333 357777777888887765 6788888888888
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 007152 465 NIAYGCDGKASSADIENAAK 484 (616)
Q Consensus 465 Ni~~g~~~~~~~~~i~~al~ 484 (616)
| .+|.+ .+.+.++++
T Consensus 83 ~-~yg~~----~~~i~~~l~ 97 (208)
T 3tau_A 83 N-YYGTP----LEYVEEKLA 97 (208)
T ss_dssp E-EEEEE----HHHHHHHHH
T ss_pred c-cCCCc----HHHHHHHHH
Confidence 7 46633 444555544
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.72 E-value=3.4e-09 Score=100.96 Aligned_cols=138 Identities=21% Similarity=0.229 Sum_probs=74.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----CC------CCEEEECCEeCC----CCC-HHHHhcccEEEccCCC--c--CC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYD-----PI------KGKILLNGVPLV----EIS-HEHLHRKISIVSQEPV--L--FN 459 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~-----~~------~G~I~idg~~i~----~~~-~~~~r~~i~~v~Q~~~--l--f~ 459 (616)
+++|+|++|||||||++.++|... |+ .|+|.++|.++. +.+ .+.+++......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999842 43 578999997652 222 2333333333333322 1 11
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCC
Q 007152 460 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 538 (616)
Q Consensus 460 ~TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~Gld-T~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTS 538 (616)
.+-.. +.+++...++.. -...+.+.. -.++.. ..|..-.......||++.++|++.++| ||
T Consensus 87 ~~~~~----------s~~~~~~~~~~~-----~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKHL----------TYENVERWLKEL-----RDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCHH----------HHHTHHHHHHHH-----HHHSCTTCEEEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCHH----------HHHHHHHHHHHH-----HHhcCCCCeEEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11110 011111111100 000001100 011111 111111111245699999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHH
Q 007152 539 ALDAESEYLVQDAMDSL 555 (616)
Q Consensus 539 aLD~~te~~i~~~l~~~ 555 (616)
|+|...-..+.+.|.+.
T Consensus 149 al~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999888888877543
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.65 E-value=3.1e-09 Score=101.73 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=51.2
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC-----------CcCCcc
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP-----------VLFNCS 461 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~-----------~lf~~T 461 (616)
++|++|++++|+|+|||||||++++|++++.|+.| +.+ +....... ...+..++|++|++ .+++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977655 222 22222111 11123477777765 344455
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHH
Q 007152 462 IEENIAYGCDGKASSADIENAAK 484 (616)
Q Consensus 462 IreNi~~g~~~~~~~~~i~~al~ 484 (616)
+++| .+|. ..+++.++++
T Consensus 78 ~~~~-~~g~----~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGN-YYGT----PVQYVKDTMD 95 (207)
T ss_dssp ETTE-EEEE----EHHHHHHHHH
T ss_pred ECCe-ecCC----CHHHHHHHHH
Confidence 5555 2442 2455666554
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.64 E-value=1.8e-09 Score=118.45 Aligned_cols=89 Identities=24% Similarity=0.305 Sum_probs=65.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC-EE-EECCEeCCC-------CCH---HHHhcccEEEccCCCcCCcc
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KI-LLNGVPLVE-------ISH---EHLHRKISIVSQEPVLFNCS 461 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~I-~idg~~i~~-------~~~---~~~r~~i~~v~Q~~~lf~~T 461 (616)
.+++|+.++|+|+||||||||+++|+|.+.|++| ++ ++||.++.+ ++. ..+++.+++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999987 77 499977632 232 23456789999873 4
Q ss_pred HHHHHhcCCCC---CCCHHHHHHHHHHcC
Q 007152 462 IEENIAYGCDG---KASSADIENAAKMAN 487 (616)
Q Consensus 462 IreNi~~g~~~---~~~~~~i~~al~~a~ 487 (616)
..+|+.+.... ....++++++++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 56676654321 123456777777766
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.63 E-value=2.6e-09 Score=100.28 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCE--eCCCCC----HHHHhcccEEEccCCCc-----
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGV--PLVEIS----HEHLHRKISIVSQEPVL----- 457 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~--~i~~~~----~~~~r~~i~~v~Q~~~l----- 457 (616)
+++++++.+| .++|+|+||||||||+++|.+++.+..|...-.+. ++-... ....+..|.+++|++.-
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 5788999999 99999999999999999999988887775433221 111111 01234578999998631
Q ss_pred -----CCccHHHH----HhcCCCCCCCHHHHHHHHHHcCch
Q 007152 458 -----FNCSIEEN----IAYGCDGKASSADIENAAKMANAH 489 (616)
Q Consensus 458 -----f~~TIreN----i~~g~~~~~~~~~i~~al~~a~l~ 489 (616)
+..++..+ +.... ...+.+++.+.++.++++
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCC
Confidence 11122111 11111 124677888888887765
No 178
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.62 E-value=4.7e-08 Score=105.28 Aligned_cols=123 Identities=27% Similarity=0.377 Sum_probs=80.0
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
..++++++++++| +.|+||+|+|||||++.+++.... .+-++ +..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~~-- 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SGS-- 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EGG--
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CHH--
Confidence 3577788888888 999999999999999999984310 00011 000
Q ss_pred HhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcC--------
Q 007152 466 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT-------- 537 (616)
Q Consensus 466 i~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpT-------- 537 (616)
+++.. .+| .|++++|-.+++|....|.|+++||+.
T Consensus 84 ------------------------~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 84 ------------------------DFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp ------------------------GTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred ------------------------HHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 01100 011 278899999999999999999999994
Q ss_pred --CCCCHHHHHHHHHHHHHH-----hCCCeEEEEecCchhhh-------hcCEEEEE
Q 007152 538 --SALDAESEYLVQDAMDSL-----MKGRTVLVIAHRLSTVQ-------SADTVAVV 580 (616)
Q Consensus 538 --SaLD~~te~~i~~~l~~~-----~~~~T~I~ItHrl~~l~-------~aD~Iivl 580 (616)
++.|.+.++.+.+-+..+ ..+..+|..||+++.++ .+|+.+.+
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 356666665555554433 13567888999986543 45665554
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.58 E-value=5.3e-09 Score=103.34 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=36.0
Q ss_pred cEEEEeE-EEECCCCCCCcceeceeEEEeC---CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 369 EVELDDV-WFAYPSRPNHMVLKGITLKLLS---GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 369 ~I~~~~v-sf~Y~~~~~~~vL~~isl~I~~---G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++++|+ +|+|++ +.++|+|+||+|++ |++++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34799999999999 9999999999999999999999865
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.58 E-value=5.6e-08 Score=101.65 Aligned_cols=46 Identities=26% Similarity=0.264 Sum_probs=36.6
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCCEEEECCE
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER--FYDPIKGKILLNGV 434 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g--~~~~~~G~I~idg~ 434 (616)
.+|+++++++| .++|||++|||||||++.|.| ++++.+|.+.-...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 47899999998 999999999999999999999 77888887765544
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.55 E-value=2.1e-09 Score=102.82 Aligned_cols=51 Identities=31% Similarity=0.386 Sum_probs=45.2
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE--EECCEeCC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI--LLNGVPLV 437 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I--~idg~~i~ 437 (616)
...+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 46788889999999999999999999999999999987 77988 89886543
No 182
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.53 E-value=1.6e-08 Score=105.70 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=84.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCc----CCccHH-
Q 007152 400 KIALVGPSGGGKSTIANLIERFYD-----------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL----FNCSIE- 463 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~-----------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l----f~~TIr- 463 (616)
.++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 399999999999999999999875 67799999997653 23356666664431 222322
Q ss_pred ----HHHhcCCC-CCCC---HHHH---HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHH----HHH-ccC
Q 007152 464 ----ENIAYGCD-GKAS---SADI---ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA----RAL-MMN 527 (616)
Q Consensus 464 ----eNi~~g~~-~~~~---~~~i---~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalA----RAl-l~~ 527 (616)
|++.+.-+ .+.. ++.+ .+.++..++. ..| --.|+..--.+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 22222111 0111 1112 2233332211 112 1122333345788889988877 666 444
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHh
Q 007152 528 PRILLLDEATSALDAESEYLVQDAMDSLM 556 (616)
Q Consensus 528 p~iliLDEpTSaLD~~te~~i~~~l~~~~ 556 (616)
|++ +||||+|.+.-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 554 8999999998888888886643
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.52 E-value=1.1e-08 Score=97.75 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=44.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHh-cccEEEccCCCcC
Q 007152 392 TLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLH-RKISIVSQEPVLF 458 (616)
Q Consensus 392 sl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r-~~i~~v~Q~~~lf 458 (616)
.++.++|+.++|+|+||||||||+++|++.+ |.+.+||.++.. ....+ ..+++++|++..+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 4667899999999999999999999999987 999999987752 22222 3568888875433
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.50 E-value=4.4e-08 Score=93.38 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=25.1
Q ss_pred ECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 378 AYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 378 ~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+|+.++..+.++|+||++++|+.++|+|++||||||+++.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455555678999999999999999999999999999999999876
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=3.5e-08 Score=101.16 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=55.7
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH----HHH-----hcccEEE-ccCC
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH----EHL-----HRKISIV-SQEP 455 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~----~~~-----r~~i~~v-~Q~~ 455 (616)
+++++|++++|+.++++|++|+||||++..|++.+.+..|+|.+.+.|...... ..| +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 457888889999999999999999999999999999999999998888754431 344 5668888 5553
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.41 E-value=5.3e-09 Score=113.35 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=96.4
Q ss_pred EEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEE
Q 007152 371 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISI 450 (616)
Q Consensus 371 ~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~ 450 (616)
+++++...|. ...+++++++++++| +.|+||+|+|||||++++++... .|.+.++|.++.+.......+.+..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4555544453 225789999999999 99999999999999999999875 7899999988876555556667888
Q ss_pred EccCCC-cCCc-cHHHHH-hcCCCCC----CCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHH
Q 007152 451 VSQEPV-LFNC-SIEENI-AYGCDGK----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 523 (616)
Q Consensus 451 v~Q~~~-lf~~-TIreNi-~~g~~~~----~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARA 523 (616)
++|++. .+.+ .+-|+| .++.... ...++..+.+.. ++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888875 3333 556777 3432111 012222232221 221 267888888888888
Q ss_pred HccCCCEEEEeCcCCC
Q 007152 524 LMMNPRILLLDEATSA 539 (616)
Q Consensus 524 ll~~p~iliLDEpTSa 539 (616)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 8888887 7887753
No 187
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.41 E-value=2.9e-07 Score=95.28 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=44.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE-EECCEeCCCCCHHHHhcccEEEccCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-LLNGVPLVEISHEHLHRKISIVSQEPV 456 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I-~idg~~i~~~~~~~~r~~i~~v~Q~~~ 456 (616)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 489999999999999999999999999988877765 66653321 2 224456777666543
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.40 E-value=7.7e-09 Score=105.72 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=75.6
Q ss_pred cceeceeEEEeCCC------EEEEECCCCCcHHHHHHHHHcCCCC--CCCEEEECCEeCCCCCHHHHhcccEEEccCCCc
Q 007152 386 MVLKGITLKLLSGS------KIALVGPSGGGKSTIANLIERFYDP--IKGKILLNGVPLVEISHEHLHRKISIVSQEPVL 457 (616)
Q Consensus 386 ~vL~~isl~I~~G~------~vaIvG~sGsGKSTL~~lL~g~~~~--~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l 457 (616)
..|++++..+.+++ ++||+|+||||||||+++|.+++.+ ++|. ++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeecccc
Confidence 56888888888777 8999999999999999999999874 4443 5566666665
Q ss_pred CCccHHHHH----hcCCCCCCCHHHHHHHHHHcCchHHHHcCCCccc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 007152 458 FNCSIEENI----AYGCDGKASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILL 532 (616)
Q Consensus 458 f~~TIreNi----~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~Gld-T~vge~G~~LSGGQrQRlalARAll~~p~ili 532 (616)
++...++.. .+|.|...+.+.+.+.++. +.+|-+ ..+- .+|-+..+|+.-+......|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~---------L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLLRVLNA---------IKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHH---------HHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHHHHHHh---------hhccccccccc----hhhhhccccccCceeeccCCCEEE
Confidence 554443332 1344534455555544433 223321 0000 011111222222234457899999
Q ss_pred EeCcCCCCCH
Q 007152 533 LDEATSALDA 542 (616)
Q Consensus 533 LDEpTSaLD~ 542 (616)
++.+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9998876554
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.39 E-value=1.2e-07 Score=90.66 Aligned_cols=126 Identities=19% Similarity=0.255 Sum_probs=73.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 479 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i 479 (616)
.++|+|++||||||+++.|.++ |...+|+ +++.+.+. .+. .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~--------------------~~~---~~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV--------------------AKD---SPLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT--------------------CSS---CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc--------------------cCC---hHHH
Confidence 6899999999999999999983 6555554 22211110 010 1122
Q ss_pred HHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCC
Q 007152 480 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR 559 (616)
Q Consensus 480 ~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~ 559 (616)
.+..+..| +. .-.+.|+.+|-.+++.++.+|+.+-.+ ++.++|.-.+.+.+.+... .+.
T Consensus 48 ~~i~~~~g-----------------~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~ 106 (206)
T 1jjv_A 48 SKIVEHFG-----------------AQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAP 106 (206)
T ss_dssp HHHHHHHC-----------------TT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSS
T ss_pred HHHHHHhC-----------------HH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCC
Confidence 22222222 11 123688999999999999888644332 3345566555555555433 356
Q ss_pred eEEEEecCchh---hhhcCEEEEEeC
Q 007152 560 TVLVIAHRLST---VQSADTVAVVSD 582 (616)
Q Consensus 560 T~I~ItHrl~~---l~~aD~Iivl~~ 582 (616)
++|+-+|.+.. .+.||.+++++.
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred EEEEEechhhhcCcHhhCCEEEEEEC
Confidence 78888887754 467999999964
No 190
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.34 E-value=7.3e-07 Score=93.04 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=49.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEe-CcCCCCCHHHHHHHHHHHHHHhCCCeEEEEe--cCch
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLD-EATSALDAESEYLVQDAMDSLMKGRTVLVIA--HRLS 569 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLD-EpTSaLD~~te~~i~~~l~~~~~~~T~I~It--Hrl~ 569 (616)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..+++.+|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 458999999887 66655677788999 9999999998888888887766578999999 6653
No 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.31 E-value=5.5e-07 Score=103.24 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=52.1
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHhCC-CeEEE-EecCchhhh
Q 007152 508 VRLSGGQKQRVAIARALMMNPRILLLDEATS-ALDAESEYLVQDAMDSLMKG-RTVLV-IAHRLSTVQ 572 (616)
Q Consensus 508 ~~LSGGQrQRlalARAll~~p~iliLDEpTS-aLD~~te~~i~~~l~~~~~~-~T~I~-ItHrl~~l~ 572 (616)
.-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+++.+....++ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3468999999999999999999999999997 89988777777777666544 45555 488876543
No 192
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.29 E-value=1.3e-07 Score=97.47 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=49.1
Q ss_pred CCcEEEEeEEEECCCCCCCccee--------------ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLK--------------GITLKLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~--------------~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.+.++|+||+|.||. ++.+|+ |+++.|.+|++++|+|++|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 357999999999995 356888 899999999999999999999999999999975
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.28 E-value=1.2e-06 Score=89.96 Aligned_cols=103 Identities=16% Similarity=0.156 Sum_probs=69.3
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHH
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENI 466 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi 466 (616)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.+. |++
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl-------------------~fS-------------- 81 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA-------------------VFS-------------- 81 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE-------------------EEE--------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE-------------------EEe--------------
Confidence 46666556899999999999999999999888765443323332 222
Q ss_pred hcCCCCCCCHHHHHHHH--HHcCc--hHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCCCC
Q 007152 467 AYGCDGKASSADIENAA--KMANA--HDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 541 (616)
Q Consensus 467 ~~g~~~~~~~~~i~~al--~~a~l--~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSaLD 541 (616)
. +.+.+++..-+ ..+++ +... . ..||++++||++.|...+.+++++|.|+|..++|
T Consensus 82 ----l-Ems~~ql~~Rlls~~~~v~~~~l~----~----------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 82 ----L-EMSAEQLALRALSDLTSINMHDLE----S----------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ----S-SSCHHHHHHHHHHHHHCCCHHHHH----H----------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ----C-CCCHHHHHHHHHHHhhCCCHHHHh----c----------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1 24444443322 12222 2211 1 1699999999999999999999999999876544
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.27 E-value=6.3e-07 Score=92.19 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=25.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++|+.+.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888764
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.26 E-value=3.6e-08 Score=96.32 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=49.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCC------CHHH----HhcccEEEccCCCcCC
Q 007152 391 ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEI------SHEH----LHRKISIVSQEPVLFN 459 (616)
Q Consensus 391 isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~------~~~~----~r~~i~~v~Q~~~lf~ 459 (616)
-+.+.++|++++|+|++|||||||+++|.|+ .|+|.+++.|...+ .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3446689999999999999999999999998 79999998775422 1111 2456888888876554
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.22 E-value=2.1e-06 Score=90.95 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=95.3
Q ss_pred EEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHH-Hhccc
Q 007152 370 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEH-LHRKI 448 (616)
Q Consensus 370 I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~-~r~~i 448 (616)
+..++++..|+.. . ++++|+ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3345566667432 1 567787 89999999999999999999999999999999999887775433221 2110
Q ss_pred EEEccCCCcCCccHHHHHhcCC-CCCCCHHHH-HHHHHHcCchHHHHcC-CCcccccccCCCCCCC---hhHHHHHHHHH
Q 007152 449 SIVSQEPVLFNCSIEENIAYGC-DGKASSADI-ENAAKMANAHDFISNF-PEKYQTFVGERGVRLS---GGQKQRVAIAR 522 (616)
Q Consensus 449 ~~v~Q~~~lf~~TIreNi~~g~-~~~~~~~~i-~~al~~a~l~~~i~~L-p~GldT~vge~G~~LS---GGQrQRlalAR 522 (616)
+ =+.|+-+.. ....+..++ .++++ .+ .++||..|-+..-.++ .-..+...++|
T Consensus 149 ~------------~~~gv~v~~~~~~~~p~~i~~~~l~---------~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~ 207 (425)
T 2ffh_A 149 G------------EKVGVPVLEVMDGESPESIRRRVEE---------KARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (425)
T ss_dssp H------------HHHTCCEEECCTTCCHHHHHHHHHH---------HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred c------------ccCCccEEecCCCCCHHHHHHHHHH---------HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhh
Confidence 0 011222110 011233343 22332 22 2566666544332332 23566667888
Q ss_pred HHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEec
Q 007152 523 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 566 (616)
Q Consensus 523 All~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItH 566 (616)
++..++-++++| ++++.|.... .+.+.+. -+.+-+++||
T Consensus 208 ~~~pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 208 VLGPDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHCCSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred ccCCceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 886666677777 5556554422 2233322 2457788876
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.17 E-value=5.6e-07 Score=89.49 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=49.8
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEEEe
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iivl~ 581 (616)
|++|||||..+|++++||||| |+++...+.+. ...++|+++++|..+..+.||++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~---~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRA---AETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH---HccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 99886554443 346899999999999888888876664
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.06 E-value=7.6e-07 Score=82.65 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=39.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhc-ccEEEccC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHR-KISIVSQE 454 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~-~i~~v~Q~ 454 (616)
++|+.++|+|++||||||+++.|++.+ |.+.+|+.++.. ...+++ .+++.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 468999999999999999999999976 889999876642 222322 35555554
No 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.06 E-value=7.4e-07 Score=84.99 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=41.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCH
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISH 441 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~ 441 (616)
..++|++++|+|+||||||||++.|.+++++..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999999889999887766554443
No 200
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.05 E-value=1.8e-07 Score=88.91 Aligned_cols=33 Identities=33% Similarity=0.465 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP 435 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~ 435 (616)
...++|+|++||||||+.+.|... |...+|.-+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999986 777776543
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.05 E-value=3e-06 Score=89.87 Aligned_cols=40 Identities=33% Similarity=0.348 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 436 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i 436 (616)
++..++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999888898866664
No 202
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.02 E-value=1.9e-05 Score=82.75 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=33.1
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEecCchhh
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLM----KGRTVLVIAHRLSTV 571 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~----~~~T~I~ItHrl~~l 571 (616)
.+|.++++||+... |+.....+.+.+.+.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999887 8777777766664433 366888899988543
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.99 E-value=2.3e-05 Score=79.18 Aligned_cols=71 Identities=25% Similarity=0.258 Sum_probs=46.8
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCcCCCCCHH----------HHHHHHHHHHHHhC-----CCeEEEEecCchh-----
Q 007152 511 SGGQKQRVAIARALMMNPRILLLDEATSALDAE----------SEYLVQDAMDSLMK-----GRTVLVIAHRLST----- 570 (616)
Q Consensus 511 SGGQrQRlalARAll~~p~iliLDEpTSaLD~~----------te~~i~~~l~~~~~-----~~T~I~ItHrl~~----- 570 (616)
++++++|-.++++...+|.++++||+.+-++.. ....++..+..... +..+|..|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 367888888888888899999999998876542 22234444444321 2346677887643
Q ss_pred hhhcCEEEEEe
Q 007152 571 VQSADTVAVVS 581 (616)
Q Consensus 571 l~~aD~Iivl~ 581 (616)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 45678776664
No 204
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.88 E-value=1.7e-05 Score=82.11 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++|+.+.|.|++|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999988874
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.87 E-value=1.2e-06 Score=81.60 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=33.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC--EEEECCEeC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNGVPL 436 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G--~I~idg~~i 436 (616)
++|++++|+|++||||||+++.|.+.+++ .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 677776444
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.84 E-value=2.3e-05 Score=80.06 Aligned_cols=106 Identities=10% Similarity=0.094 Sum_probs=64.0
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHH
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEEN 465 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreN 465 (616)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-... .| ..+.|++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~s------------- 103 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHS------------- 103 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEE-------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEE-------------
Confidence 357777656999999999999999999998887753211 11 0122222
Q ss_pred HhcCCCCCCCHHHHHHHHHH--cCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHccCCCEEEEeCcCCC
Q 007152 466 IAYGCDGKASSADIENAAKM--ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 539 (616)
Q Consensus 466 i~~g~~~~~~~~~i~~al~~--a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll~~p~iliLDEpTSa 539 (616)
- +.+.+++.+-+.. .+++ +..+..|. ..||++++||++.|...+.++++++.|+|...
T Consensus 104 -----l-E~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 104 -----L-EMGKKENIKRLIVTAGSIN--AQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----S-SSCHHHHHHHHHHHHTTCC--HHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----C-CCCHHHHHHHHHHHHcCCC--HHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 1 2344444332221 1221 01111110 12788888888888888888888888887644
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.83 E-value=2.3e-05 Score=84.02 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=44.7
Q ss_pred cc-CCCEEEEeCcCCCCCH-HHHHHHHHHHHHHh-CCCeEEEEecCch-hhhh-cCEEEE-EeCCEEEEecCh
Q 007152 525 MM-NPRILLLDEATSALDA-ESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQS-ADTVAV-VSDGEIVESGTH 591 (616)
Q Consensus 525 l~-~p~iliLDEpTSaLD~-~te~~i~~~l~~~~-~~~T~I~ItHrl~-~l~~-aD~Iiv-l~~G~Ive~G~~ 591 (616)
++ +|++|++||+..-.+. .+...+...+..+. .++++|+.||+.. .+.. .+++.- ++.|.+++.+++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 35 8999999999887765 57777888887654 4688999999843 2221 122222 455666665553
No 208
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.81 E-value=8.9e-06 Score=82.61 Aligned_cols=142 Identities=18% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCc--CCccHHHHHhcCCCCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVL--FNCSIEENIAYGCDGKA 474 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~l--f~~TIreNi~~g~~~~~ 474 (616)
++.+++|+|++|+|||||++.|+|.- +.+.. .......++..++++++..- |-+| | ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s----~~~~tTr~~~~gi~~~~~~~i~~iDT---------p-G~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITS----RKAQTTRHRIVGIHTEGAYQAIYVDT---------P-GL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECC----CCSSCCSSCEEEEEEETTEEEEEESS---------S-SC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccC----CCCCcceeeEEEEEEECCeeEEEEEC---------c-CC
Confidence 34489999999999999999999863 11111 01111123456778776531 2122 2 12
Q ss_pred CHHHHHHHHHHcCchHHHHcCC---Ccccccc--cCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCcCCCCCHHH-HH
Q 007152 475 SSADIENAAKMANAHDFISNFP---EKYQTFV--GERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAES-EY 546 (616)
Q Consensus 475 ~~~~i~~al~~a~l~~~i~~Lp---~GldT~v--ge~G~~LSGGQrQRlalARAll--~~p~iliLDEpTSaLD~~t-e~ 546 (616)
.. +-...+.. ++..... ...|..+ -+. ..+|+|++ .+++++. ..|.++++ +.+|... ..
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 20 11111111 1111111 1222221 122 22999886 5666665 56888888 6788765 55
Q ss_pred HHHHHHHHHhC--C--CeEEEEecCchhh
Q 007152 547 LVQDAMDSLMK--G--RTVLVIAHRLSTV 571 (616)
Q Consensus 547 ~i~~~l~~~~~--~--~T~I~ItHrl~~l 571 (616)
.+.+.+.++.+ + .++.+.+|.-.-+
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 56666665543 2 2444556665443
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=4.4e-06 Score=86.43 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred cceeceeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 386 MVLKGITLKLLSGSK--IALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 386 ~vL~~isl~I~~G~~--vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
.+++.++..+++|+. +.+.||+|+||||+++.+++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 588899999999998 999999999999999999998766544
No 210
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.77 E-value=0.00013 Score=71.03 Aligned_cols=28 Identities=39% Similarity=0.426 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKG 427 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G 427 (616)
+++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997766555
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.77 E-value=5.3e-06 Score=95.54 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
|.+++|+.+.|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998753
No 212
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.71 E-value=5.3e-06 Score=91.35 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=44.3
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEP 455 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~ 455 (616)
.+++++++++ +|+.++++||+|+|||||++.|++...+..|.|.++|..-..--....++.+++.+|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 4678888888 89999999999999999999999999999999988885432212223345566666543
No 213
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.68 E-value=1.7e-05 Score=85.05 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=97.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC------------CCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCc-cHHHH
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYD------------PIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNC-SIEEN 465 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~------------~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~-TIreN 465 (616)
-+++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++..-+++...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 7789999999987666655566666666676666642 33455
Q ss_pred HhcCC--------CCCCCHH--HHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEE
Q 007152 466 IAYGC--------DGKASSA--DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLL 533 (616)
Q Consensus 466 i~~g~--------~~~~~~~--~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--~~p~iliL 533 (616)
+..++ ....+++ ++.+.++..+..-.+ .-+..|-. .++ .-+--+- .-.+++.+. ...+++
T Consensus 261 i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~il--v~NK~Dl~-~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-- 332 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV--VFNKWDLV-VHR--EKRYDEF-TKLFREKLYFIDYSPLI-- 332 (439)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEE--EEECGGGS-TTG--GGCHHHH-HHHHHHHCGGGTTSCEE--
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEECccCC-Cch--hhHHHHH-HHHHHHHhccCCCCcEE--
Confidence 54431 0112332 233333332211000 00111111 000 0011111 113455443 345554
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchh-hhhc---------CEEEEEeC-----CEEEEecChhHHhhcC
Q 007152 534 DEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST-VQSA---------DTVAVVSD-----GEIVESGTHEELLSKG 598 (616)
Q Consensus 534 DEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~-l~~a---------D~Iivl~~-----G~Ive~G~~~eL~~~~ 598 (616)
+|||++...-..+.+.+.+..+..+.-+-||++.. +..+ =+|..... -.++-.++.-+++ .
T Consensus 333 --~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~--~ 408 (439)
T 1mky_A 333 --FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKV--K 408 (439)
T ss_dssp --ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTC--C
T ss_pred --EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccC--C
Confidence 59999988777777777655433333345555532 1111 14433321 1234444444444 3
Q ss_pred ChhHHHHHHHhc
Q 007152 599 GVYTALVKRQLQ 610 (616)
Q Consensus 599 ~~y~~l~~~~~~ 610 (616)
..|++.++++..
T Consensus 409 ~~y~r~l~~~~r 420 (439)
T 1mky_A 409 NPQKIFLRKLIR 420 (439)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 447777776653
No 214
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.67 E-value=1.1e-05 Score=78.52 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=32.6
Q ss_pred eeceeEEEe---CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC
Q 007152 388 LKGITLKLL---SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 432 (616)
Q Consensus 388 L~~isl~I~---~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id 432 (616)
|.++|++++ +|.+++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 566666665 9999999999999999999999999988 6666543
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.67 E-value=0.00015 Score=71.50 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=28.2
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
++++++..++| +.|+||+|+|||||++.+++.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44555555555 9999999999999999999976421 345554
No 216
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.67 E-value=0.00019 Score=74.44 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=29.0
Q ss_pred cceeceeEE---EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 386 MVLKGITLK---LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 386 ~vL~~isl~---I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+-|+.+ +. +++|+.+.|.|++|||||||+.-++...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345554 33 8999999999999999999998777544
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.66 E-value=7.1e-06 Score=78.24 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=38.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCCEE----------EECCEeCCCCCHHHHhcc
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYDP-IKGKI----------LLNGVPLVEISHEHLHRK 447 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~-~~G~I----------~idg~~i~~~~~~~~r~~ 447 (616)
..+|..++|+|+||||||||++.|...++. ..+.+ .++|.++.-++.+.+.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 468999999999999999999999987742 11211 235666666666666543
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.66 E-value=1e-05 Score=76.63 Aligned_cols=42 Identities=24% Similarity=0.408 Sum_probs=31.6
Q ss_pred EEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 376 WFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 376 sf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
+|+||+. .++++++|+..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 5677753 36899999998877 689999999999999999987
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.64 E-value=1.5e-05 Score=83.27 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=27.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIK 426 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~ 426 (616)
+++..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999876543
No 220
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.64 E-value=5.9e-05 Score=77.25 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~ 425 (616)
++..+.|.||+|+|||||++.+++.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45789999999999999999999876543
No 221
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.62 E-value=2.1e-05 Score=72.45 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
.|+.++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56665
No 222
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.62 E-value=6.4e-06 Score=85.26 Aligned_cols=52 Identities=19% Similarity=0.157 Sum_probs=46.5
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 437 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~ 437 (616)
.+++++++.+++|..++|+|++|+|||||++.|++.+.+..|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666654
No 223
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.60 E-value=6.3e-06 Score=79.05 Aligned_cols=42 Identities=33% Similarity=0.304 Sum_probs=37.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC--EEEECCE
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG--KILLNGV 434 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G--~I~idg~ 434 (616)
+.+++|.+++|+|++||||||+++.|.+.+.|..| .+.+||.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 55789999999999999999999999999988888 8888763
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.59 E-value=6.5e-05 Score=73.21 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=75.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcC-CccHHHHHhcCCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLF-NCSIEENIAYGCDG 472 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf-~~TIreNi~~g~~~ 472 (616)
.+.+|+.+.++|++||||||++.+.+.......|. ...+.++.|.|... .-++.+|+.-....
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 35689999999999999999888765322111111 12467777777643 34666776532110
Q ss_pred CCCHHHHHHHHHHcCchHHHHcCCCcccc----cccCCCCC---CChhHHHHHHHHHHHccCCCEEEEeCcCC-CCCHHH
Q 007152 473 KASSADIENAAKMANAHDFISNFPEKYQT----FVGERGVR---LSGGQKQRVAIARALMMNPRILLLDEATS-ALDAES 544 (616)
Q Consensus 473 ~~~~~~i~~al~~a~l~~~i~~Lp~GldT----~vge~G~~---LSGGQrQRlalARAll~~p~iliLDEpTS-aLD~~t 544 (616)
.. + ..-|+.. .....+.. -+.|+-.+.. +.-+++-+++|+||+=. ++|...
T Consensus 136 ~~------------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~ 194 (235)
T 3llm_A 136 EP------------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDF 194 (235)
T ss_dssp CT------------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHH
T ss_pred cc------------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHH
Confidence 00 0 0011111 11111111 2456655553 44689999999999976 577776
Q ss_pred HHHHHHHHHHHhCCCeEEEE
Q 007152 545 EYLVQDAMDSLMKGRTVLVI 564 (616)
Q Consensus 545 e~~i~~~l~~~~~~~T~I~I 564 (616)
.....+.+....++.-+|+.
T Consensus 195 ~~~~l~~i~~~~~~~~~il~ 214 (235)
T 3llm_A 195 LLVVLRDVVQAYPEVRIVLM 214 (235)
T ss_dssp HHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHhhCCCCeEEEE
Confidence 64455555555444434433
No 225
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.57 E-value=4.7e-06 Score=81.00 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=48.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---cCCCCCCCEE--------EECCEeCCCCC-HHHHhcccEEEc------cCCCcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIE---RFYDPIKGKI--------LLNGVPLVEIS-HEHLHRKISIVS------QEPVLF 458 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~---g~~~~~~G~I--------~idg~~i~~~~-~~~~r~~i~~v~------Q~~~lf 458 (616)
+.-.++|+|||||||||+++.|+ |+...+.|.+ .-.|.++.+.. ...+.+.+.+.. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 5545556666 23566665543 445556666666 455666
Q ss_pred CccHHHHHh
Q 007152 459 NCSIEENIA 467 (616)
Q Consensus 459 ~~TIreNi~ 467 (616)
...|.+||.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 666666653
No 226
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.52 E-value=2e-05 Score=81.79 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=37.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 438 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~ 438 (616)
+++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4578999999999999999999999999999999888876653
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.51 E-value=0.00012 Score=74.29 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=27.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
..+.++||+|+||||+++.+++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999987766643
No 228
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.47 E-value=6.3e-05 Score=70.54 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=21.0
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
++++++++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 688999987776 899999999999999999997
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.46 E-value=0.00011 Score=69.46 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~ 425 (616)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999876543
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.45 E-value=0.00035 Score=70.50 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=43.0
Q ss_pred ec-eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCC
Q 007152 389 KG-ITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVE 438 (616)
Q Consensus 389 ~~-isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~ 438 (616)
++ ++++.+ |+.++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 35 777766 99999999999999999999999999989999998877654
No 231
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.41 E-value=7.7e-05 Score=68.76 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++|.+++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999864
No 232
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.39 E-value=7.2e-06 Score=77.73 Aligned_cols=70 Identities=23% Similarity=0.353 Sum_probs=39.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC------CCCCCEEEECCE--eCCCCCH--------HHHhcccEEEccCCCcCCccHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFY------DPIKGKILLNGV--PLVEISH--------EHLHRKISIVSQEPVLFNCSIE 463 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~------~~~~G~I~idg~--~i~~~~~--------~~~r~~i~~v~Q~~~lf~~TIr 463 (616)
+++|+|++||||||+++.|...+ +|..|...++.. +....+. ..+++....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 68999999999999999999843 333333222110 0000000 0123334566777788999998
Q ss_pred HHHhcC
Q 007152 464 ENIAYG 469 (616)
Q Consensus 464 eNi~~g 469 (616)
+|+.+.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 888764
No 233
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.38 E-value=0.00032 Score=70.12 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++++..+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999999865
No 234
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.37 E-value=0.00019 Score=72.74 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=27.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+.++++..+.|.||+|+|||||++.+++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 4578899999999999999999999999763
No 235
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.34 E-value=0.00033 Score=75.32 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCcC-CCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhh
Q 007152 512 GGQKQRVAIARALMMNPRILLLDEAT-SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 572 (616)
Q Consensus 512 GGQrQRlalARAll~~p~iliLDEpT-SaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~ 572 (616)
+.|.+-...++..+++++++|+.... ..+... ...+.+.+++ .++.+|+|.++.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccchh
Confidence 35888888999999999988865444 444444 4456666644 4788999999887653
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.33 E-value=6.4e-05 Score=72.80 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
++..+.|.||+|+|||||++.++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999976643
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=0.0001 Score=68.89 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=26.9
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999986
No 238
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=5.2e-05 Score=78.31 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=33.4
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchh
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 570 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~ 570 (616)
++.++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6788888888898888876555567777777653
No 239
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.26 E-value=5.2e-05 Score=73.20 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=33.1
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhh
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 571 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l 571 (616)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999866 78887777877776544456778888876543
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.20 E-value=0.00011 Score=68.80 Aligned_cols=75 Identities=28% Similarity=0.441 Sum_probs=49.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC-------------CCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHh
Q 007152 401 IALVGPSGGGKSTIANLIERFY-------------DPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIA 467 (616)
Q Consensus 401 vaIvG~sGsGKSTL~~lL~g~~-------------~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~ 467 (616)
+.|+||||||||||++.|+..+ +|-.|++ ||+|+.-++.+++.+.+ .++-++-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999999987543 3445765 89999888888887654 34444444444433 3
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 007152 468 YGCDGKASSADIENAAKM 485 (616)
Q Consensus 468 ~g~~~~~~~~~i~~al~~ 485 (616)
||- +.+.+.++++.
T Consensus 78 YGt----~~~~v~~~l~~ 91 (186)
T 1ex7_A 78 YGS----TVASVKQVSKS 91 (186)
T ss_dssp EEE----EHHHHHHHHHH
T ss_pred eee----ecceeeehhhC
Confidence 332 34455555443
No 241
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.18 E-value=0.15 Score=56.19 Aligned_cols=100 Identities=9% Similarity=0.023 Sum_probs=60.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 36 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 115 (616)
Q Consensus 36 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (616)
+.+.++.+.....+++.++..++..+.+.+...++..+.+.-..... ......+......+.++.++..++..+..+..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHA-LTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666677777777888888888888888876532110000 00011111222334444455566677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 007152 116 SSASERVVARLRKNLFSHLIN 136 (616)
Q Consensus 116 ~~~~~~~~~~lr~~~~~~l~~ 136 (616)
.....++..++..++-.++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~ 102 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYN 102 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777753
No 242
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.18 E-value=0.0011 Score=59.02 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=25.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~ 425 (616)
+.+..+.|.|++|+|||++++.+.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 456779999999999999999999876543
No 243
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.17 E-value=0.00022 Score=64.24 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.5
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIE 419 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~ 419 (616)
+.++++.+| ..+|+|||||||||++..|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555554 89999999999999999987
No 244
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.15 E-value=0.0014 Score=70.20 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=85.0
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCC-EE-EECCEeCCCCCHHHHhcccE----EEccCCCcCCc
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKG-KI-LLNGVPLVEISHEHLHRKIS----IVSQEPVLFNC 460 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~I-~idg~~i~~~~~~~~r~~i~----~v~Q~~~lf~~ 460 (616)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+ ++.. +.+.+++..++. -++.+.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~----- 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR----- 259 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-----
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 46666545899999999999999999999888776543223 33 3332 355555554421 122111
Q ss_pred cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHHcCCCcccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCcCC
Q 007152 461 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATS 538 (616)
Q Consensus 461 TIreNi~~g~~~~~~~~~i~~al~~a~l~~~i~~Lp~GldT~vge~G~~LSGGQrQRlalARAll--~~p~iliLDEpTS 538 (616)
++ -| ..++++.....+.+ +.+...|-- +-+ ...+|..+ ..+.+|.+. ++++++|+|..+.
T Consensus 260 -l~----~g---~l~~~~~~~~~~a~---~~l~~~~l~----i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 260 -VR----LG---QLTDRDFSRLVDVA---SRLSEAPIY----IDD-TPDLTLME--VRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp -CC----GG---GCCHHHHHHHHHHH---HHHHTSCEE----EEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEEECGGG
T ss_pred -Hh----CC---CCCHHHHHHHHHHH---HHHhcCCEE----EEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEEcChhh
Confidence 11 11 24555544433332 122222211 111 13456554 356667666 4799999999886
Q ss_pred CCCH------HH-H---HHHHHHHHHHhCCCeEEEE
Q 007152 539 ALDA------ES-E---YLVQDAMDSLMKGRTVLVI 564 (616)
Q Consensus 539 aLD~------~t-e---~~i~~~l~~~~~~~T~I~I 564 (616)
-.+. .+ . ..+.+.|+.+.+..=+-+|
T Consensus 322 ~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi 357 (444)
T 2q6t_A 322 MSGPGSGKSGENRQQEIAAISRGLKALARELGIPII 357 (444)
T ss_dssp CBCC-------CHHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 5543 11 1 3555666677666667788
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.13 E-value=0.00067 Score=69.27 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=24.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999987775
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.12 E-value=0.00013 Score=68.18 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=33.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE-EECC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI-LLNG 433 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I-~idg 433 (616)
..++|..+.|+|++||||||+++.|++.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345899999999999999999999999988776765 4544
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.10 E-value=0.00012 Score=69.47 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEe
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVP 435 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~ 435 (616)
...++|+|++||||||+++.|.+.+ |...+|+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999999876 555666533
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.07 E-value=0.00023 Score=74.38 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=34.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCCEEEECCE
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERF-----------YDPIKGKILLNGV 434 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~-----------~~~~~G~I~idg~ 434 (616)
.+++|.+++|||++|+|||||++.|.|. .+|..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4678899999999999999999999998 6788888887663
No 249
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.05 E-value=5.2e-05 Score=78.98 Aligned_cols=58 Identities=28% Similarity=0.170 Sum_probs=36.5
Q ss_pred CCcEEEEeEEEECCCCCCCcceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 367 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 367 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 356889999888853 35789999976 99999999999999999987666555544333
No 250
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.04 E-value=0.00047 Score=62.71 Aligned_cols=25 Identities=40% Similarity=0.379 Sum_probs=22.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
-+++|+|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3699999999999999999998653
No 251
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.00013 Score=71.90 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=33.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPL 436 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i 436 (616)
..+++..+.++|++||||||+++.|.+.+. .|.+.+|+..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456778999999999999999999999875 35677887444
No 252
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.01 E-value=0.0015 Score=67.84 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=30.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
.+|..+.|.||+|+|||||++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45778999999999999999999988764444455544
No 253
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.01 E-value=1.2e-05 Score=84.02 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=64.1
Q ss_pred CCChhHHHHHHHHHHHc-cCCCEEEEeC---cC------CCCCHHHHHHHHHHHHHHhC--CCeEEEEecCchhhhhcCE
Q 007152 509 RLSGGQKQRVAIARALM-MNPRILLLDE---AT------SALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADT 576 (616)
Q Consensus 509 ~LSGGQrQRlalARAll-~~p~iliLDE---pT------SaLD~~te~~i~~~l~~~~~--~~T~I~ItHrl~~l~~aD~ 576 (616)
.+|+|++||..++++.. .+|++++||| |+ +++|+.....+.+.+.++.+ +.|+++++|--..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45777888988998875 5999999999 65 68999999999999977654 8899999987555566777
Q ss_pred EEEEeCCEEEEecChhHHhhc
Q 007152 577 VAVVSDGEIVESGTHEELLSK 597 (616)
Q Consensus 577 Iivl~~G~Ive~G~~~eL~~~ 597 (616)
+.++++ +.+.|+.+||.++
T Consensus 338 i~~i~~--~l~~~~~~~~~~~ 356 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQNT 356 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC-
T ss_pred HHHHHH--HhcccchhHhhcC
Confidence 777754 5567777777543
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00025 Score=65.60 Aligned_cols=38 Identities=21% Similarity=0.093 Sum_probs=30.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCC---CCEEEECCEe
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYDPI---KGKILLNGVP 435 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~~~---~G~I~idg~~ 435 (616)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999886543 3777777644
No 255
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.96 E-value=0.00038 Score=64.55 Aligned_cols=22 Identities=45% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 256
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.95 E-value=0.67 Score=50.96 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 38 AKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSS 117 (616)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (616)
+.++.+.....+++.++..++..+.+.+...++..+.+.- ...........+++.+++..++..+..+....
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 16 LWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDG--------FGKTDRSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSS--------TTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334344444445555555555555555555554443210 00111111222223344455666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 007152 118 ASERVVARLRKNLFSHLIN 136 (616)
Q Consensus 118 ~~~~~~~~lr~~~~~~l~~ 136 (616)
...++..++..++-.++.+
T Consensus 88 ~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFG 106 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777878877777777654
No 257
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.88 E-value=0.77 Score=50.54 Aligned_cols=90 Identities=9% Similarity=0.014 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 38 AKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSS 117 (616)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (616)
+.++.+.....+++.++..++..+.......++..+.+.. ....-......+.+.+++..++..+..++...
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEG--------IARGDFSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555443210 00111122233334444455555666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007152 118 ASERVVARLRKNLFSHLI 135 (616)
Q Consensus 118 ~~~~~~~~lr~~~~~~l~ 135 (616)
...+...++..++-.++.
T Consensus 86 ~~~~~~~~~~~~lr~~l~ 103 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLF 103 (587)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665553
No 258
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.86 E-value=0.0011 Score=64.85 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHHHHc---cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhC----CCeEEEEecCchh
Q 007152 511 SGGQKQRVAIARALM---MNPRILLLDEATSALDAESEYLVQDAMDSLMK----GRTVLVIAHRLST 570 (616)
Q Consensus 511 SGGQrQRlalARAll---~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~----~~T~I~ItHrl~~ 570 (616)
+.|++.+-.+.|+++ ++++++|+--..+.++. .+..+.+.+.+... ++++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344556667777774 88887776544445544 44555566665432 5799999998764
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.86 E-value=0.0005 Score=63.82 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~ 425 (616)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 260
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.86 E-value=0.00051 Score=64.98 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 007152 400 KIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g 420 (616)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 261
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.85 E-value=0.0047 Score=60.50 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++...+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345668999999999999999999754
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.78 E-value=0.005 Score=65.17 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEE
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILL 431 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~i 431 (616)
++..++++|++||||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999887664444443
No 263
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.76 E-value=0.0032 Score=65.35 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++|+.+.|.|++|+|||||+.-++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3799999999999999999999776644
No 264
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.75 E-value=0.0015 Score=67.95 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998763
No 265
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.72 E-value=0.0045 Score=64.09 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999999765
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.72 E-value=0.00084 Score=61.83 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 267
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.72 E-value=0.0018 Score=69.06 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=27.2
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 4444335899999999999999999998766653
No 268
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.71 E-value=0.0087 Score=60.22 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999888765
No 269
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.70 E-value=0.0013 Score=63.37 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecC-----------chhhhhcCEEEEEe
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR-----------LSTVQSADTVAVVS 581 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHr-----------l~~l~~aD~Iivl~ 581 (616)
+++++++||+-- |+.+.- .+.+.+.+ .+.++|++-|+ ...+..||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~v-e~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRIC-EVANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHH-HHHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHH-HHHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665422 23333433 37899999993 34567899999863
No 270
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.70 E-value=0.00063 Score=63.20 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.+|.+++++|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
No 271
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.69 E-value=0.00062 Score=71.59 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=43.1
Q ss_pred CCCEEEEeCcCCCCC---HHHHHHHHHHHHHHh-CCCeEEEEecCchhh-------------hhcCEEEEEeCC
Q 007152 527 NPRILLLDEATSALD---AESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-------------QSADTVAVVSDG 583 (616)
Q Consensus 527 ~p~iliLDEpTSaLD---~~te~~i~~~l~~~~-~~~T~I~ItHrl~~l-------------~~aD~Iivl~~G 583 (616)
.|-++++||+=.-++ +.....+.+.+++.+ .+..++++||+++.+ .+|+..+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 478999999988885 556677777777665 377899999999754 456777777654
No 272
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.67 E-value=0.0021 Score=64.99 Aligned_cols=28 Identities=11% Similarity=0.269 Sum_probs=25.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
--+++|..+.|.||+|+|||||+..++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999999875
No 273
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.67 E-value=0.0014 Score=60.74 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=27.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-C----CCCCCC----EEEECCEe
Q 007152 400 KIALVGPSGGGKSTIANLIER-F----YDPIKG----KILLNGVP 435 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g-~----~~~~~G----~I~idg~~ 435 (616)
+++|+|++|+|||||++.+++ . +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999975554 3 567766 56666643
No 274
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.65 E-value=0.00031 Score=72.04 Aligned_cols=37 Identities=32% Similarity=0.455 Sum_probs=33.6
Q ss_pred cceeceeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCC
Q 007152 386 MVLKGITLKLLSGSK--IALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 386 ~vL~~isl~I~~G~~--vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 468889999999999 9999999999999999999864
No 275
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.61 E-value=0.0005 Score=71.43 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=42.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCCCCCHHHHhcccEEEccCCCcCCccHHHHHhcCCCCCCCHHHH
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLVEISHEHLHRKISIVSQEPVLFNCSIEENIAYGCDGKASSADI 479 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~TIreNi~~g~~~~~~~~~i 479 (616)
+++|||++|+|||||++.|+|.. + ++.+++. .|+..|+.+. ..+++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~------------------~Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPF------------------ATIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCG------------------GGGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCC------------------ceeccceeeE---ecChHHH
Confidence 58999999999999999999874 2 1122221 1777777765 3566788
Q ss_pred HHHHHHcCchH
Q 007152 480 ENAAKMANAHD 490 (616)
Q Consensus 480 ~~al~~a~l~~ 490 (616)
..+++.++..+
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888887765
No 276
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.59 E-value=0.00073 Score=70.51 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=44.2
Q ss_pred HHHHHHHHccCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCchhhhhcCEEEE
Q 007152 517 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 579 (616)
Q Consensus 517 RlalARAll~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~~l~~aD~Iiv 579 (616)
+.+|+++|..+|+++++|||| |+++-. .+++....+.+++.++|..+....+||++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 469999999999999999999 776543 344444458899999999876666777543
No 277
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.57 E-value=0.00071 Score=68.32 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.7
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
..+++..+.+ .|.-++|+|+||+||||++..|++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4688888888 799999999999999999999987
No 278
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.57 E-value=0.0012 Score=62.52 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=23.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIE 419 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~ 419 (616)
+.++++.+ ...+|+|||||||||++..|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34445555 489999999999999999875
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.0011 Score=60.58 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
..++|+|++||||||+++.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
No 280
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.56 E-value=0.0037 Score=59.05 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=30.3
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 569 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~ 569 (616)
.++.++++||.- .+++.....+.+.+.+...+..+|++|++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999974 4677777777777776544555666776654
No 281
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.55 E-value=0.0023 Score=59.68 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=33.7
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEecCch-----------hhhhcCEEEEEeC
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-----------TVQSADTVAVVSD 582 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~-~~~T~I~ItHrl~-----------~l~~aD~Iivl~~ 582 (616)
+++++++||+-- +|++-. +.++.+. .+..+++..++.+ .+..||.|..|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~----~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLF----EVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHH----HHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHH----HHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999864 555433 3333222 3777888788444 5677999988854
No 282
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.54 E-value=0.0013 Score=61.20 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+|.++.|.|++||||||+++.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477999999999999999999987553
No 283
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.53 E-value=0.0014 Score=61.80 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=25.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.+|..++|.|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999887
No 284
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.51 E-value=0.00033 Score=66.72 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDPI 425 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~~ 425 (616)
+++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988653
No 285
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.49 E-value=0.85 Score=50.34 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=47.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 32 GRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALR 111 (616)
Q Consensus 32 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (616)
+..++.+.++.+.....+++.++..++..+...+...++..+.+.- ....-...+..+++++++..++..+.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVV--------FVPRRFDLLPRYMLILGTIYALTSLL 93 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------TTTTCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555555555555555555555554432110 00000112223334444455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 112 AWLFSSASERVVARLRKNLFSHLI 135 (616)
Q Consensus 112 ~~~~~~~~~~~~~~lr~~~~~~l~ 135 (616)
.+.......++..++..++-.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~lr~~l~ 117 (598)
T 3qf4_B 94 FWLQGKIMLTLSQDVVFRLRKELF 117 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677667777777777777666664
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.48 E-value=0.0014 Score=60.73 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.48 E-value=0.0013 Score=66.11 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
+|..+.|+|+|||||||+++.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999987653 36677765
No 288
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.014 Score=59.31 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++...+.|.||+|+|||||++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466789999999999999999999875
No 289
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.45 E-value=0.0022 Score=66.31 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=31.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc-----------CCCCCCCEEEECC
Q 007152 398 GSKIALVGPSGGGKSTIANLIER-----------FYDPIKGKILLNG 433 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g-----------~~~~~~G~I~idg 433 (616)
|-+++|||.+|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4467888888766
No 290
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.44 E-value=0.011 Score=72.17 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=29.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
+++|+.+.|.||+|+|||||+.-++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999887665444433
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0015 Score=63.42 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+-++|..++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999998743
No 292
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.41 E-value=0.0014 Score=60.60 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999976
No 293
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.41 E-value=0.0043 Score=62.36 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+...+.+.||+|+|||+|++.++..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568889999999999999999876
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.38 E-value=0.0013 Score=61.27 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++|..+.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998754
No 295
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.38 E-value=0.0018 Score=61.95 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
++-.++|+|++||||||+++.|.. + |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 356899999999999999999998 2 5555654
No 296
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.38 E-value=0.0011 Score=61.25 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++..+.|+|++||||||+++.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 297
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.35 E-value=1.7 Score=47.77 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=48.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007152 34 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEAL-AAVRSTILSIFLIVIVGSVCTALRA 112 (616)
Q Consensus 34 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (616)
.++.+.++.+.....+++.++..++..+.+.+...++..+.+. .. .........+++.+++..++..+..
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDE---------GFGNAESNFLRILPFMILGLMFVRGLSG 82 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555544321 00 0011112222222344556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Q 007152 113 WLFSSASERVVARLRKNLFSHLIN 136 (616)
Q Consensus 113 ~~~~~~~~~~~~~lr~~~~~~l~~ 136 (616)
+.......++..++..++-.++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b5x_A 83 FASSYCLSWVSGNVVMQMRRRLFN 106 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766654
No 298
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.0018 Score=59.01 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=18.7
Q ss_pred CEEEEECCCCCcHHHHHHHH
Q 007152 399 SKIALVGPSGGGKSTIANLI 418 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL 418 (616)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 299
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.28 E-value=0.002 Score=61.00 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++|..++|.|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998754
No 300
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.28 E-value=0.0019 Score=60.29 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=24.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++..++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998755
No 301
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.27 E-value=0.014 Score=61.70 Aligned_cols=37 Identities=27% Similarity=0.199 Sum_probs=28.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECC
Q 007152 393 LKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNG 433 (616)
Q Consensus 393 l~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg 433 (616)
+.=++...+.++|++||||||+++.|+..+ |-..++.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 334567899999999999999999998754 4444443
No 302
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.22 E-value=0.013 Score=60.59 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++...+.|.||+|+|||||++.++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999865
No 303
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.22 E-value=0.0022 Score=60.79 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++|..++|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998654
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.18 E-value=0.0023 Score=60.50 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+|..++|.|++||||||+++.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987654
No 305
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.0019 Score=59.57 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=18.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++..+.|.|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998654
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.14 E-value=0.0023 Score=58.82 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998765
No 307
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.13 E-value=0.0077 Score=60.64 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLI 418 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL 418 (616)
+++| .+-|.||+|||||||+--+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHH
Confidence 7899 9999999999999995433
No 308
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.09 E-value=0.0019 Score=63.87 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=24.9
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.+.+...++| +.|.||+|+|||||++.+++..
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3344445555 8899999999999999999843
No 309
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.013 Score=62.11 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
-+++-.-+.+.||+|+|||+|++.+++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 466778899999999999999999998753
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.08 E-value=0.0023 Score=59.86 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=25.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
..+++.+++|+|++||||||+++.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999998765
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.06 E-value=0.003 Score=57.96 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q 007152 399 SKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g 420 (616)
..+.|+|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 312
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0033 Score=65.36 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999765
No 313
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.04 E-value=0.0095 Score=52.80 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+.+..+.|.|++|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4567799999999999999999987643
No 314
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.03 E-value=0.0029 Score=62.21 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++|+|++|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998765
No 315
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.02 E-value=0.028 Score=57.26 Aligned_cols=24 Identities=42% Similarity=0.643 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
..+.|.||+|+|||||++.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.01 E-value=0.0082 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999874
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.00 E-value=0.0031 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.99 E-value=0.0038 Score=59.70 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++|.++.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998765
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.93 E-value=0.0025 Score=58.44 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCC---CEEEECC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIK---GKILLNG 433 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~---G~I~idg 433 (616)
..++|+|+||||||||+..|++.+.+.. |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999998765432 4455443
No 320
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.92 E-value=0.021 Score=57.76 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++..+.|.||+|+|||||++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998754
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.91 E-value=0.0035 Score=58.15 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
.+.|.|++||||||+++.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998664
No 322
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.007 Score=54.52 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.88 E-value=0.0046 Score=58.14 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++.+++|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 324
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.85 E-value=0.0033 Score=58.94 Aligned_cols=22 Identities=50% Similarity=0.676 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
No 325
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.85 E-value=0.033 Score=59.35 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++...+.|.||+|+|||||++.++...
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3566889999999999999999999876
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.83 E-value=0.0043 Score=59.70 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++.++.|+|++||||||+++.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998655
No 327
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.79 E-value=0.0015 Score=67.65 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 569 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~ 569 (616)
++.++++||+- .++..+...+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 56899999964 4677777778777765444456777777665
No 328
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.79 E-value=0.019 Score=71.08 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=31.9
Q ss_pred Ccceecee--EEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 385 HMVLKGIT--LKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 385 ~~vL~~is--l~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+.|+++. .-+++|+.+.+.|++|||||||+..++-.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678876 57999999999999999999999988744
No 329
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.79 E-value=0.04 Score=68.24 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=26.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+++|+.+.|.||+|+|||||+.-++.....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~ 409 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 409 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998877765543
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.78 E-value=0.0046 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+++|.|++||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988663
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.75 E-value=0.0047 Score=58.73 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 332
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.74 E-value=0.0042 Score=59.45 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998765
No 333
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.74 E-value=0.0054 Score=55.79 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+.++|.|..||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999998644
No 334
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.73 E-value=0.042 Score=55.61 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=31.6
Q ss_pred CCCEEEEeCcCCCCC-HHHHHHHHHHHHHHhCCCeEEEEecCchh
Q 007152 527 NPRILLLDEATSALD-AESEYLVQDAMDSLMKGRTVLVIAHRLST 570 (616)
Q Consensus 527 ~p~iliLDEpTSaLD-~~te~~i~~~l~~~~~~~T~I~ItHrl~~ 570 (616)
+++++++||+-. +. .+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 34 56666777777766556778888888763
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.70 E-value=0.0048 Score=57.07 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+..++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999998754
No 336
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.69 E-value=0.0051 Score=55.28 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.68 E-value=0.0051 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
..++|+|++||||||+++.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 338
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.66 E-value=0.017 Score=66.14 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.+.++||+|+|||++++.+...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 339
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.66 E-value=0.008 Score=54.10 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.66 E-value=0.0058 Score=55.44 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 341
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.65 E-value=0.0053 Score=57.82 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998865
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.64 E-value=0.0055 Score=58.27 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 343
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.64 E-value=0.0047 Score=55.55 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 344
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.01 Score=55.86 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.61 E-value=0.0031 Score=63.29 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++-.++|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 346
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.61 E-value=0.0062 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999999754
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.61 E-value=0.0059 Score=57.25 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
..++|+|.+||||||+.+.|...+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998753
No 348
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.61 E-value=0.0053 Score=57.77 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+..+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998655
No 349
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.60 E-value=0.0062 Score=54.92 Aligned_cols=23 Identities=48% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998754
No 350
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.58 E-value=0.0061 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.56 E-value=0.0063 Score=56.52 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 352
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.0061 Score=56.51 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+.-+++++|++|+|||||++.+.+-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999999864
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.55 E-value=0.0064 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 354
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.023 Score=59.93 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++..-+.+.||+|+|||+|++.+++..
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45666779999999999999999999865
No 355
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.027 Score=59.46 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++..-+.+.||+|+|||+|++.+++..
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46677889999999999999999999865
No 356
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.53 E-value=0.013 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
++.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557999999999999999999874
No 357
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.53 E-value=0.0061 Score=59.96 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 358
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.52 E-value=0.0058 Score=60.58 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+++++|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 359
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.52 E-value=0.0065 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.51 E-value=0.0062 Score=59.37 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++-.++|.|++||||||+++.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998655
No 361
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.50 E-value=0.006 Score=54.46 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 362
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.50 E-value=0.0095 Score=55.23 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 363
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.50 E-value=0.0076 Score=57.71 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=19.3
Q ss_pred eCCCE-EEEECCCCCcHHHHHHHHHcC
Q 007152 396 LSGSK-IALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 396 ~~G~~-vaIvG~sGsGKSTL~~lL~g~ 421 (616)
++|+. +.+.|+.|+||||++--++..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHH
Confidence 35664 788999999999995555443
No 364
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.49 E-value=0.0067 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.49 E-value=0.0051 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+..++|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 366
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.49 E-value=0.0069 Score=54.60 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 367
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.47 E-value=0.0091 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999986
No 368
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.45 E-value=0.0075 Score=61.38 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998763
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.45 E-value=0.007 Score=59.28 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998744
No 370
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.44 E-value=0.0065 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 371
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.44 E-value=0.0072 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 372
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.43 E-value=0.0073 Score=54.90 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 373
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.43 E-value=0.0073 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999988643
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.41 E-value=0.0071 Score=59.56 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 375
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.40 E-value=0.0061 Score=60.54 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++++||++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988753
No 376
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.40 E-value=0.015 Score=59.14 Aligned_cols=27 Identities=37% Similarity=0.443 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++...+.|.||+|+|||+|++.++...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 456779999999999999999998764
No 377
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.40 E-value=0.0071 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 378
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.39 E-value=0.01 Score=55.53 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.4
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
..++..-+.+ .|..+.|+||||||||||+.-|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3567766654 68899999999999999999998754
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.39 E-value=0.007 Score=55.12 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 380
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.36 E-value=0.0078 Score=57.44 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+|.++.|.|++||||||+++.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 381
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.36 E-value=0.007 Score=56.13 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+--+++++|++|+|||||++.+.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 382
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.35 E-value=0.0084 Score=62.38 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.0
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIE 419 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~ 419 (616)
++..+++.+ ...+|+|+|||||||++..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 556666666 589999999999999999875
No 383
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.32 E-value=0.0086 Score=55.41 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+++++|++|+|||||++.+.|.+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 384
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.32 E-value=0.0083 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 385
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.31 E-value=0.015 Score=54.53 Aligned_cols=22 Identities=36% Similarity=0.416 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 386
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.29 E-value=0.0086 Score=59.44 Aligned_cols=23 Identities=39% Similarity=0.640 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 387
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.28 E-value=0.0084 Score=60.48 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 388
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.28 E-value=0.0087 Score=54.98 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 389
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.27 E-value=0.0077 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 390
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.26 E-value=0.012 Score=54.10 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 391
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.25 E-value=0.009 Score=53.51 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 007152 400 KIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g 420 (616)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 392
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.24 E-value=0.0099 Score=54.04 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 393
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.23 E-value=0.042 Score=59.20 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++...+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998764
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.22 E-value=0.0076 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q 007152 398 GSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.21 E-value=0.0083 Score=55.22 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999753
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.21 E-value=0.0092 Score=54.98 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 397
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.19 E-value=0.0096 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q 007152 398 GSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
.-+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999976
No 398
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.041 Score=57.38 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=25.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
-+++-.-+.+.||+|+|||+|++.+++...
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 355556699999999999999999998653
No 399
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.0099 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.15 E-value=0.016 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 007152 400 KIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g 420 (616)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 401
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.14 E-value=0.0091 Score=54.21 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 402
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.14 E-value=0.0098 Score=60.16 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+|+|+|++|+|||||++.|+|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47999999999999999999985
No 403
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.12 E-value=4.9 Score=44.10 Aligned_cols=143 Identities=7% Similarity=-0.051 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007152 101 VIVGSVCTALRAWLFSSASERVVARLRKNLF----SHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNL 176 (616)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~----~~l~~~~~~~~~~~~~G~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 176 (616)
.++..+..++......++..++..++-.++. ....+.+.....++-+.|+- .+.+. +...+...+..++..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~-~i~~~---~~~~~~~~~~~~~~~i 151 (595)
T 2yl4_A 76 AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTA-LLGRS---VTENLSDGLRAGAQAS 151 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHH-HHHHH---TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555444443 23334455544443333332 22211 1122222233333333
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhCc
Q 007152 177 STAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQ 248 (616)
Q Consensus 177 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~ 248 (616)
+.+++.+.+-+.+.....+++.+.+++.........+..++......+.. .......+.+.-++.-..-..
T Consensus 152 ~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~l~gi~~ik~~~~e~~ 222 (595)
T 2yl4_A 152 VGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT-QLAEERIGNVRTVRAFGKEMT 222 (595)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHTTCHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhCccHH
Confidence 33333333333333333333333333334444444444444444333333 333334445555555544443
No 404
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.10 E-value=0.01 Score=54.74 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
No 405
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.09 E-value=0.011 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 406
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.08 E-value=0.0099 Score=57.26 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
..+|.++.|.|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999987764
No 407
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.08 E-value=0.07 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++..+.|.||+|+|||+|++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356899999999999999999998764
No 408
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.054 Score=56.76 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=25.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
-+++..-+.+.||+|+|||+|++.+++...
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 356667799999999999999999998753
No 409
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.06 E-value=0.011 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 410
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.05 E-value=0.077 Score=64.91 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=28.2
Q ss_pred ceeceeEE---EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 387 VLKGITLK---LLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 387 vL~~isl~---I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-|+.+ +. +++|+.+.|.|++|+|||||+.-++...
T Consensus 370 ~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~ 407 (1706)
T 3cmw_A 370 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (1706)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45554 33 8999999999999999999988776543
No 411
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.02 E-value=0.011 Score=58.10 Aligned_cols=24 Identities=46% Similarity=0.544 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+|+|+|++|+|||||++.|+|--
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999753
No 412
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.02 E-value=0.011 Score=54.00 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999864
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.01 E-value=0.011 Score=56.48 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=26.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
++|.++.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999988765
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.01 E-value=0.015 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++|+|++|+|||||++.+++-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.99 E-value=0.012 Score=59.12 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+..++|+||||||||||+..|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999776
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.99 E-value=0.014 Score=56.39 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++..+.|.|++||||||+++.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998765
No 417
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.048 Score=57.74 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++-.-+.+.||+|+|||+|++.+++..
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 46677889999999999999999999865
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.97 E-value=0.01 Score=60.63 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
..++|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998764
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.96 E-value=0.012 Score=56.30 Aligned_cols=23 Identities=43% Similarity=0.814 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998655
No 420
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.95 E-value=0.012 Score=53.83 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 421
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.94 E-value=0.011 Score=56.07 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 422
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.94 E-value=0.012 Score=54.31 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 423
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.93 E-value=0.012 Score=54.76 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 424
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.93 E-value=0.012 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 425
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.93 E-value=0.006 Score=64.83 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=32.5
Q ss_pred ceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEE
Q 007152 387 VLKGITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKI 429 (616)
Q Consensus 387 vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I 429 (616)
+++.+ +.+-+|++++|+|+||+|||||++.|++......|.|
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 34444 6778999999999999999999999987654433443
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.92 E-value=0.011 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 427
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.91 E-value=0.025 Score=61.28 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=27.5
Q ss_pred eeceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 388 LKGITLKLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 388 L~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
|+.+---+++|+.+.|.|++|+|||||+.-++--.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 44443348999999999999999999987666443
No 428
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.90 E-value=0.01 Score=56.43 Aligned_cols=25 Identities=44% Similarity=0.558 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998865
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.89 E-value=0.017 Score=52.66 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=27.1
Q ss_pred cceeceeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 386 MVLKGITLKLLSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 386 ~vL~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
..++..-+. -.|.-+.|.|+||+|||||+..|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 345555554 4589999999999999999998876
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.88 E-value=0.013 Score=55.88 Aligned_cols=29 Identities=31% Similarity=0.521 Sum_probs=25.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
.+|.+++|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999887754
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.88 E-value=0.013 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 432
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.88 E-value=0.013 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 433
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.012 Score=54.58 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 434
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.86 E-value=0.0082 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q 007152 397 SGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.85 E-value=0.014 Score=56.50 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
.+|.+++|.|++||||||+++.|...+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36999999999999999999999887653
No 436
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.83 E-value=0.053 Score=55.37 Aligned_cols=42 Identities=5% Similarity=0.130 Sum_probs=28.2
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 569 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~ 569 (616)
+.+|+|+||+= .|.......+.+.+.+-.++...|++|++.+
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 56899999974 4556666666666654333445677888875
No 437
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.83 E-value=0.018 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999975
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.83 E-value=0.014 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 439
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.013 Score=54.48 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 007152 400 KIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g 420 (616)
+++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999987
No 440
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.82 E-value=0.0076 Score=57.33 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.-+++|+|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999999864
No 441
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.82 E-value=0.012 Score=54.95 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+.=+++++|++|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 33479999999999999999999753
No 442
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.81 E-value=0.015 Score=55.38 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+|.++.+.|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999887653
No 443
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.80 E-value=0.016 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+-=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 444
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.80 E-value=0.014 Score=55.35 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999864
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.79 E-value=0.013 Score=54.36 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.79 E-value=0.014 Score=53.33 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.76 E-value=0.018 Score=53.23 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 448
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.76 E-value=0.0015 Score=75.20 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=38.1
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEECCEeCC
Q 007152 390 GITLKLLSGSKIALVGPSGGGKSTIANLIERFYDPIKGKILLNGVPLV 437 (616)
Q Consensus 390 ~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~idg~~i~ 437 (616)
..++.+++|+.+.++||+|+|||||++.+++.+. .+-+.+++.++.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 3567789999999999999999999999999874 356677776654
No 449
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.76 E-value=0.014 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++++|++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 450
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.013 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.74 E-value=0.015 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 452
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.74 E-value=0.015 Score=57.25 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=23.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCCE
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIKGK 428 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~ 428 (616)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876554444
No 453
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.71 E-value=0.014 Score=57.91 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 454
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.70 E-value=0.031 Score=56.23 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=29.0
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecCch
Q 007152 527 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 569 (616)
Q Consensus 527 ~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHrl~ 569 (616)
++.++++||+- .++......+.+.+.+...+..+|++|++.+
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 47899999963 3556666667777766544556777777754
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.69 E-value=0.016 Score=54.01 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
-+++++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 47999999999999999999886543
No 456
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.68 E-value=0.016 Score=55.68 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
++|.++++.|.+||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999987664
No 457
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.66 E-value=0.015 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 458
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.65 E-value=0.018 Score=52.74 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+.+..+.|+|++|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999988653
No 459
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.64 E-value=0.061 Score=57.54 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=57.3
Q ss_pred ccccCCCCCCChhHHHHHHHHH--HHcc---------------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEE
Q 007152 501 TFVGERGVRLSGGQKQRVAIAR--ALMM---------------NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLV 563 (616)
Q Consensus 501 T~vge~G~~LSGGQrQRlalAR--All~---------------~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ 563 (616)
+........+||||+|-.-+|. |++. .-.+++|||| |-+|++..+..++-++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 5556567789999999533322 2221 1247999999 999999999999999876 677778
Q ss_pred EecCchhhhhcCEEEEEe
Q 007152 564 IAHRLSTVQSADTVAVVS 581 (616)
Q Consensus 564 ItHrl~~l~~aD~Iivl~ 581 (616)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7777 6667899999874
No 460
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.64 E-value=0.016 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999875
No 461
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.63 E-value=0.016 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
=+++++|++|+|||||++.+.+-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999863
No 462
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.016 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q 007152 398 GSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
.-+++++|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999985
No 463
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.017 Score=53.77 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 464
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.015 Score=54.70 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=23.7
Q ss_pred eceeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 389 KGITLKLLSGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 389 ~~isl~I~~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
.|+.|.-.+--+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 344433333347999999999999999999974
No 465
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.61 E-value=0.017 Score=56.76 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|.+|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.60 E-value=0.017 Score=53.94 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+.=+++|+|++|+|||||++.+.+-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999865
No 467
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.59 E-value=0.014 Score=53.48 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999974
No 468
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.58 E-value=0.015 Score=58.63 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
.++|+|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 469
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.57 E-value=0.017 Score=54.32 Aligned_cols=24 Identities=38% Similarity=0.311 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
.=+|+++|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999864
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.57 E-value=0.017 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q 007152 399 SKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
-+++++|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.57 E-value=0.01 Score=58.50 Aligned_cols=29 Identities=28% Similarity=0.412 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 395 LLSGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 395 I~~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
.+++.+|+|.|..||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998763
No 472
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.55 E-value=0.016 Score=55.06 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-.++|+|++|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 473
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.54 E-value=0.018 Score=53.22 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999888753
No 474
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.53 E-value=0.013 Score=54.15 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 475
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.53 E-value=0.017 Score=56.90 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
No 476
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.52 E-value=0.014 Score=53.22 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.52 E-value=0.016 Score=56.12 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
+|.+++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998764
No 478
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.50 E-value=0.015 Score=55.65 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 394 KLLSGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 394 ~I~~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+.++...+.|+||.||||+|.++.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44667789999999999999999999766
No 479
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.50 E-value=0.02 Score=54.20 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+|+|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.49 E-value=0.016 Score=58.73 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
..+.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998763
No 481
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.49 E-value=0.017 Score=57.11 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 482
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.48 E-value=0.018 Score=54.54 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 483
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.46 E-value=0.02 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+.-+++++|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3347999999999999999999864
No 484
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.46 E-value=0.016 Score=57.93 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++|+|++|+|||||++.|+|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.021 Score=54.25 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 007152 400 KIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
+|+|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998743
No 486
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.40 E-value=0.013 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=9.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.39 E-value=0.02 Score=57.42 Aligned_cols=31 Identities=32% Similarity=0.267 Sum_probs=24.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCCEEEEC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIKGKILLN 432 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~G~I~id 432 (616)
..+.|+|++||||||+++.|...+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998732 2545553
No 488
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.36 E-value=0.026 Score=53.21 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998653
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.36 E-value=0.018 Score=53.80 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 490
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.26 E-value=0.019 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
++.-+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.22 E-value=0.023 Score=57.09 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q 007152 398 GSKIALVGPSGGGKSTIANLIERFYD 423 (616)
Q Consensus 398 G~~vaIvG~sGsGKSTL~~lL~g~~~ 423 (616)
...+.|+||||||||||+..|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 35789999999999999999997753
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.19 E-value=0.021 Score=57.67 Aligned_cols=26 Identities=46% Similarity=0.714 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q 007152 397 SGSKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999988764
No 493
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.16 E-value=0.035 Score=64.29 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=26.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCC-EEEECC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFYDPIKG-KILLNG 433 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~~~~~G-~I~idg 433 (616)
..+.|+||+|+|||++++.|...+....+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999998754333 244443
No 494
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.023 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 495
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.07 E-value=0.099 Score=50.06 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=39.9
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHHHhCCCeEEEEecC-----------chhhhhcCEEEEEe
Q 007152 526 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR-----------LSTVQSADTVAVVS 581 (616)
Q Consensus 526 ~~p~iliLDEpTSaLD~~te~~i~~~l~~~~~~~T~I~ItHr-----------l~~l~~aD~Iivl~ 581 (616)
.+.+++++||+-=..| ...+.+.+.+ .++.+|+-.++ ...+..||.|..|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 4455556655 57888888888 45688999999874
No 496
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.02 E-value=0.023 Score=54.07 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q 007152 399 SKIALVGPSGGGKSTIANLIERFY 422 (616)
Q Consensus 399 ~~vaIvG~sGsGKSTL~~lL~g~~ 422 (616)
-+++|+|.+|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999888754
No 497
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.01 E-value=0.022 Score=51.96 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q 007152 396 LSGSKIALVGPSGGGKSTIANLIERFYDP 424 (616)
Q Consensus 396 ~~G~~vaIvG~sGsGKSTL~~lL~g~~~~ 424 (616)
+.+..+.|+||+|+|||||++.++..+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44678899999999999999999887644
No 498
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.98 E-value=0.012 Score=55.63 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++|+|++|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 499
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.92 E-value=0.025 Score=53.03 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q 007152 397 SGSKIALVGPSGGGKSTIANLIER 420 (616)
Q Consensus 397 ~G~~vaIvG~sGsGKSTL~~lL~g 420 (616)
+.=+++++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999988874
No 500
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.89 E-value=0.026 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 007152 400 KIALVGPSGGGKSTIANLIERF 421 (616)
Q Consensus 400 ~vaIvG~sGsGKSTL~~lL~g~ 421 (616)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999864
Done!