Query 007153
Match_columns 615
No_of_seqs 208 out of 948
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 19:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5594 Uncharacterized integr 100.0 1E-108 2E-113 883.0 48.5 595 2-608 20-655 (827)
2 KOG1134 Uncharacterized conser 100.0 3E-102 6E-107 864.4 51.5 587 6-607 7-600 (728)
3 PF02714 DUF221: Domain of unk 100.0 6.6E-60 1.4E-64 493.0 32.4 293 316-608 1-295 (325)
4 PF13967 RSN1_TM: Late exocyto 100.0 7.1E-35 1.5E-39 270.3 13.7 156 5-168 1-157 (157)
5 PF14703 DUF4463: Domain of un 99.1 1.7E-10 3.7E-15 95.4 7.0 71 227-297 1-85 (85)
6 PF04547 Anoctamin: Calcium-ac 99.0 6.7E-08 1.5E-12 105.6 24.8 231 356-607 109-363 (452)
7 KOG2513 Protein required for m 97.7 0.008 1.7E-07 65.2 22.3 108 358-475 260-371 (647)
8 TIGR01659 sex-lethal sex-letha 97.2 0.00091 2E-08 70.0 8.0 41 186-232 104-144 (346)
9 KOG0144 RNA-binding protein CU 96.7 0.0065 1.4E-07 62.7 8.6 136 187-337 32-189 (510)
10 PLN03134 glycine-rich RNA-bind 96.5 0.019 4.1E-07 52.3 9.7 36 188-229 33-68 (144)
11 PLN03120 nucleic acid binding 96.3 0.029 6.4E-07 55.4 9.9 34 189-228 4-37 (260)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 96.1 0.037 8E-07 58.4 10.9 102 188-371 2-111 (352)
13 PF00076 RRM_1: RNA recognitio 96.1 0.02 4.3E-07 44.5 6.4 32 192-229 1-32 (70)
14 TIGR01628 PABP-1234 polyadenyl 96.0 0.022 4.7E-07 64.4 8.9 170 191-371 2-200 (562)
15 TIGR01648 hnRNP-R-Q heterogene 95.5 0.048 1.1E-06 60.7 8.5 40 187-232 56-95 (578)
16 KOG0149 Predicted RNA-binding 95.4 0.039 8.4E-07 52.9 6.4 33 191-229 14-46 (247)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 95.3 0.083 1.8E-06 55.7 9.4 36 189-230 269-304 (352)
18 PF14259 RRM_6: RNA recognitio 95.2 0.056 1.2E-06 42.2 6.0 31 192-228 1-31 (70)
19 KOG0122 Translation initiation 95.0 0.094 2E-06 50.6 7.7 77 188-346 188-266 (270)
20 KOG0125 Ataxin 2-binding prote 94.9 0.13 2.8E-06 51.7 8.6 91 187-361 94-196 (376)
21 TIGR01628 PABP-1234 polyadenyl 94.2 0.3 6.5E-06 55.1 10.8 39 187-231 176-214 (562)
22 TIGR01648 hnRNP-R-Q heterogene 93.6 0.33 7.1E-06 54.2 9.4 39 312-350 268-308 (578)
23 KOG0127 Nucleolar protein fibr 92.9 0.39 8.5E-06 51.5 8.3 34 190-229 293-326 (678)
24 TIGR01645 half-pint poly-U bin 92.7 0.59 1.3E-05 52.4 9.8 86 188-355 203-290 (612)
25 KOG2514 Uncharacterized conser 92.1 1.4 3E-05 50.1 11.6 54 418-471 435-488 (861)
26 TIGR01622 SF-CC1 splicing fact 91.9 1.2 2.6E-05 48.8 11.2 36 188-229 88-123 (457)
27 KOG4206 Spliceosomal protein s 91.4 0.72 1.6E-05 44.3 7.3 45 311-355 50-96 (221)
28 KOG0148 Apoptosis-promoting RN 90.6 0.61 1.3E-05 45.8 6.1 115 188-333 5-124 (321)
29 PLN03121 nucleic acid binding 90.1 0.47 1E-05 46.4 4.9 38 187-230 3-40 (243)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 89.9 3.2 7E-05 45.8 12.1 39 187-230 273-311 (481)
31 TIGR01642 U2AF_lg U2 snRNP aux 89.9 1.5 3.2E-05 48.8 9.5 36 188-229 294-329 (509)
32 KOG4212 RNA-binding protein hn 89.7 1.6 3.4E-05 45.7 8.5 38 185-227 40-77 (608)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 89.6 0.28 6.1E-06 54.2 3.5 36 189-230 2-37 (481)
34 KOG0117 Heterogeneous nuclear 89.1 1.5 3.3E-05 46.1 8.0 38 187-230 81-118 (506)
35 TIGR01622 SF-CC1 splicing fact 88.8 2 4.4E-05 47.0 9.5 37 187-229 184-220 (457)
36 TIGR01645 half-pint poly-U bin 88.7 1.3 2.8E-05 49.8 7.8 37 187-229 105-141 (612)
37 PF04059 RRM_2: RNA recognitio 87.3 1 2.2E-05 37.8 4.6 37 190-230 2-38 (97)
38 PF13893 RRM_5: RNA recognitio 86.4 1.1 2.4E-05 33.1 4.0 24 313-336 21-44 (56)
39 KOG4211 Splicing factor hnRNP- 85.7 1.2 2.7E-05 47.4 5.1 37 187-230 8-44 (510)
40 smart00362 RRM_2 RNA recogniti 85.1 1.4 3E-05 33.4 4.1 34 191-230 1-34 (72)
41 KOG0109 RNA-binding protein LA 85.1 0.8 1.7E-05 45.5 3.2 37 192-234 5-41 (346)
42 KOG1548 Transcription elongati 83.8 3.8 8.3E-05 41.8 7.4 44 293-336 286-337 (382)
43 KOG0107 Alternative splicing f 82.8 1.2 2.5E-05 41.1 3.1 43 303-345 37-81 (195)
44 KOG0145 RNA-binding protein EL 80.9 13 0.00027 36.6 9.4 145 191-349 43-209 (360)
45 KOG1365 RNA-binding protein Fu 79.8 20 0.00042 37.3 10.8 26 310-335 321-346 (508)
46 cd00590 RRM RRM (RNA recogniti 78.4 3.5 7.7E-05 31.2 4.2 33 191-229 1-33 (74)
47 smart00361 RRM_1 RNA recogniti 77.5 3 6.6E-05 32.5 3.6 26 311-336 35-60 (70)
48 PF07810 TMC: TMC domain; Int 76.2 22 0.00049 30.6 8.7 54 551-609 47-105 (111)
49 PF07292 NID: Nmi/IFP 35 domai 75.2 0.48 1E-05 38.9 -1.7 24 186-213 49-72 (88)
50 KOG0146 RNA-binding protein ET 72.1 7.6 0.00017 38.2 5.3 51 310-372 57-112 (371)
51 KOG0108 mRNA cleavage and poly 69.9 16 0.00035 39.5 7.8 38 187-230 15-53 (435)
52 KOG0117 Heterogeneous nuclear 69.1 10 0.00022 40.2 5.8 77 288-364 95-179 (506)
53 TIGR01659 sex-lethal sex-letha 68.6 6.3 0.00014 41.4 4.4 38 187-230 191-228 (346)
54 smart00360 RRM RNA recognition 65.8 7.9 0.00017 28.8 3.5 24 311-334 36-59 (71)
55 KOG0127 Nucleolar protein fibr 64.0 17 0.00037 39.5 6.4 36 190-231 6-41 (678)
56 smart00362 RRM_2 RNA recogniti 63.8 9.1 0.0002 28.6 3.5 25 311-335 37-61 (72)
57 smart00360 RRM RNA recognition 60.8 10 0.00022 28.2 3.3 32 194-231 1-32 (71)
58 cd00590 RRM RRM (RNA recogniti 57.4 14 0.0003 27.7 3.5 25 312-336 39-63 (74)
59 COG0724 RNA-binding proteins ( 56.8 15 0.00032 36.1 4.6 36 189-230 115-150 (306)
60 KOG0123 Polyadenylate-binding 53.9 11 0.00024 40.0 3.1 36 192-233 79-114 (369)
61 KOG0132 RNA polymerase II C-te 53.7 8.8 0.00019 43.4 2.3 40 186-231 418-457 (894)
62 PF14605 Nup35_RRM_2: Nup53/35 50.4 22 0.00049 26.1 3.4 32 190-228 2-33 (53)
63 KOG1457 RNA binding protein (c 49.3 25 0.00054 33.9 4.2 25 311-335 75-99 (284)
64 TIGR01642 U2AF_lg U2 snRNP aux 44.7 46 0.001 36.8 6.4 25 313-337 464-488 (509)
65 PF14257 DUF4349: Domain of un 42.1 3.7E+02 0.0079 26.9 14.6 25 282-306 160-184 (262)
66 KOG2150 CCR4-NOT transcription 40.7 79 0.0017 35.0 7.0 23 281-303 119-141 (575)
67 PF01102 Glycophorin_A: Glycop 39.6 26 0.00055 30.8 2.6 22 11-32 73-94 (122)
68 KOG0113 U1 small nuclear ribon 39.5 39 0.00084 34.1 4.1 37 188-230 100-136 (335)
69 KOG0105 Alternative splicing f 37.7 31 0.00068 32.3 2.9 33 188-226 5-37 (241)
70 KOG4208 Nucleolar RNA-binding 37.6 34 0.00074 32.7 3.2 24 311-334 90-113 (214)
71 PF02714 DUF221: Domain of unk 37.5 4.7E+02 0.01 26.8 18.7 39 556-594 247-286 (325)
72 KOG0107 Alternative splicing f 37.0 47 0.001 30.9 3.9 41 187-233 8-48 (195)
73 KOG0114 Predicted RNA-binding 36.1 36 0.00078 28.9 2.8 25 311-335 55-79 (124)
74 PF11608 Limkain-b1: Limkain b 35.3 75 0.0016 26.0 4.3 41 312-352 38-80 (90)
75 KOG0144 RNA-binding protein CU 33.5 31 0.00068 36.5 2.5 27 311-337 74-100 (510)
76 PF11945 WASH_WAHD: WAHD domai 33.3 1E+02 0.0022 31.6 6.2 39 285-323 44-82 (297)
77 PF02388 FemAB: FemAB family; 33.1 3.6E+02 0.0079 29.0 10.8 89 212-322 218-315 (406)
78 KOG0132 RNA polymerase II C-te 31.1 79 0.0017 36.2 5.2 48 289-337 434-481 (894)
79 KOG0105 Alternative splicing f 31.1 75 0.0016 29.8 4.3 42 187-234 113-154 (241)
80 KOG4050 Glutamate transporter 30.2 3.2E+02 0.0069 25.1 7.9 42 345-386 33-75 (188)
81 PLN03121 nucleic acid binding 29.5 88 0.0019 30.9 4.7 21 311-331 42-62 (243)
82 PF10309 DUF2414: Protein of u 29.4 1.4E+02 0.003 22.9 4.8 41 188-233 4-53 (62)
83 KOG0718 Molecular chaperone (D 27.9 3.8E+02 0.0082 29.2 9.2 29 568-596 372-400 (546)
84 PRK11020 hypothetical protein; 27.1 3E+02 0.0065 23.7 6.8 48 232-305 5-52 (118)
85 KOG4205 RNA-binding protein mu 26.9 60 0.0013 33.5 3.2 40 189-234 97-136 (311)
86 PF04059 RRM_2: RNA recognitio 26.7 72 0.0016 26.8 3.1 24 312-335 44-67 (97)
87 PF13234 rRNA_proc-arch: rRNA- 26.2 2.5E+02 0.0054 28.2 7.7 55 196-250 171-232 (268)
88 KOG0131 Splicing factor 3b, su 25.7 60 0.0013 30.5 2.7 40 186-231 6-45 (203)
89 COG5438 Predicted multitransme 25.2 5.9E+02 0.013 27.0 9.9 46 416-461 203-248 (385)
90 PF02439 Adeno_E3_CR2: Adenovi 25.0 1.7E+02 0.0037 20.0 4.0 29 3-31 5-33 (38)
91 PLN03213 repressor of silencin 24.6 1.1E+02 0.0023 33.2 4.5 38 187-230 8-45 (759)
92 KOG0226 RNA-binding proteins [ 24.5 1.1E+02 0.0024 30.3 4.4 26 310-335 229-254 (290)
93 PF11823 DUF3343: Protein of u 24.3 1.2E+02 0.0027 23.7 4.0 36 314-352 2-37 (73)
94 KOG0110 RNA-binding protein (R 22.1 1.2E+02 0.0027 34.3 4.7 36 312-347 559-596 (725)
95 PF06790 UPF0259: Uncharacteri 21.9 8E+02 0.017 24.5 10.4 80 451-530 71-152 (248)
96 COG5570 Uncharacterized small 21.1 3.4E+02 0.0074 19.9 5.8 50 233-306 6-55 (57)
97 KOG0114 Predicted RNA-binding 21.0 1.4E+02 0.0031 25.4 3.7 35 188-228 17-51 (124)
98 PF04423 Rad50_zn_hook: Rad50 20.8 3.2E+02 0.0069 19.9 5.3 29 275-304 22-50 (54)
99 KOG0153 Predicted RNA-binding 20.8 1E+02 0.0023 31.8 3.5 38 311-348 262-302 (377)
100 KOG4207 Predicted splicing fac 20.1 1.2E+02 0.0026 29.1 3.5 38 188-231 12-49 (256)
No 1
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=100.00 E-value=1e-108 Score=883.02 Aligned_cols=595 Identities=27% Similarity=0.468 Sum_probs=548.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceecccccCCCCCCCCCC-CCCCCcccchHHhhcCCHHHHHHhcCcc
Q 007153 2 DFDSFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLDPWEGG-SRTRNPFTWIKEAMSSSEQDVINMSGLD 80 (615)
Q Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~p~~~~-~~~~~~~~Wi~~~~~~~d~~i~~~~GlD 80 (615)
++++++|++.+++.++++++++|++||+| ++++|+||+..++.+ .+.| +.+.|+|||+.++++++|+.+++++|+|
T Consensus 20 s~~~~~t~l~f~~~~~~~~l~~f~iLR~r--~k~lY~pr~~~~~~~-~~~P~~~~ss~~gWl~~L~~i~d~~~l~~aGlD 96 (827)
T COG5594 20 STSAVITQLVFAGLIFLVFLILFLILRKR--WKRLYAPRTNFDGQN-ECLPEPNPSSYWGWLEPLVKIPDEFLLQYAGLD 96 (827)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHhcCcceeecCCC-cccCCCCccchHHHHHHHHhCCHHHHHHHcCcc
Confidence 57899999999999999999999999998 689999999887643 2222 6789999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCcccccCCCCCCCCCCCcccccccCCcCCCCCchHHHHHHHHHHHHH
Q 007153 81 TAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFV 160 (615)
Q Consensus 81 a~~flrflr~~~~lf~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~~~l~~~s~~Nv~~~s~~lw~h~i~~~~~~~~ 160 (615)
||+||||+|||+++|++.|++++|||+|||++.++..+ |+ ....++++++|++|+.+ ++++|+|++.+|++.++
T Consensus 97 ~y~fLrflkm~~~~~~i~sl~~ipIL~Pvn~~~~~~~~-gn----~~s~s~l~~Ls~~Nv~~-~n~~~aHvf~~~~f~~~ 170 (827)
T COG5594 97 GYFFLRFLKMLIKLLFILSLILIPILLPVNYHFQKATN-GN----SDSESGLDKLSISNVSP-SNRLYAHVFLSWFFFGY 170 (827)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHEeeeeeeccccccc-CC----ccchhhhhHhhhhcccC-CCceeeeeehhHHHHHH
Confidence 99999999999999999999999999999999866532 11 12357999999999987 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---------CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 161 TYFLLWRGYKHVSELRADALMSPE---------VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 161 ~~~~l~~e~~~~~~~R~~~l~~~~---------~~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
++|.+++|++.|..+||++++++. .+.++|||+++++|.++++ +++|.++|+++.-|++.+..+|||.
T Consensus 171 vlfii~~el~~y~~lr~a~~~~p~y~qs~~~~~~~~ssRTvlis~LP~~~~~---~e~L~~~~~kl~~~~i~~~~l~~~~ 247 (827)
T COG5594 171 VLFIIFRELRFYVVLRQAYLRSPLYQQSLLTLQNNLSSRTVLISGLPSELRS---DEELKELFDKLKVGEIDSDVLCRDL 247 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhccCCCCceEEeecCChhhcC---chhHHHHHhhcCeeeeccchhhhhh
Confidence 999999999999999999998875 2358999999999999999 8889999999988899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh----------cc----------------CCCCCCCCcccccCcc--CCCCccc
Q 007153 232 KEANKIYEELEGYKKKLARAEAVYAES----------KS----------------AGKPEGTRPTIKTGFL--GLLGKRV 283 (615)
Q Consensus 232 ~~l~~l~~~r~~~~~~Le~~~~~~~~~----------~~----------------~~~~~~~rP~~~~~~~--~~~g~kv 283 (615)
+.++++.++|++..+++|.+..++... |+ ...|+++||+||.+.. ++.||||
T Consensus 248 ~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~~i~gKkV 327 (827)
T COG5594 248 GTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKKSGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNKGIFGKKV 327 (827)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccCCCCCCCcccccchhhhhhccccccchhhhhhhhhhhcccee
Confidence 999999999999999999988765321 10 0135678999987654 7789999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCCCCcee-eecCCCCCCeeecCcCCchH
Q 007153 284 DAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWT-VSDAPESRELIWNNLNIKFF 362 (615)
Q Consensus 284 dai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~-v~~AP~P~DIiW~NL~~~~~ 362 (615)
|+|||+++++.+++++|++.|+..++..++++|||||+|+..||+|+|.+..+++.... ++.||+|+||+|+|+..+++
T Consensus 328 daI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFkSq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi~W~Nl~ls~~ 407 (827)
T COG5594 328 DAIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFKSQASAQIAAQSQIYSRVLGKLKVEIAPAPNDIIWDNLRLSRK 407 (827)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEehhHHHHHHHHhhhhhhhhcceeeeecCCccccccccchHHHH
Confidence 99999999999999999999999877777889999999999999999999888887665 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhcccchhhhc-chhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007153 363 QRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVIN-ITALKTVLEAYLPQIALIVFLALLPKLLLFL 441 (615)
Q Consensus 363 ~r~~R~~~~~~~~~~l~if~~ipv~~i~~l~~l~~l~~~~p~l~~~~~-~~~~~~~i~~~lp~lil~~~n~llp~i~~~l 441 (615)
+|..|++.++.+.++++++|++|||+++.++|++++.+.+||++.+.+ .|+++++++|+||++++.+++.++|++++++
T Consensus 408 ~r~~k~~~~ni~~il~II~w~~pVa~v~~i~Nl~~l~~~~p~l~~il~~~~~l~~iltglLptv~~~~l~~ivP~fir~L 487 (827)
T COG5594 408 ERLFKRISANILFILLIILWAFPVAFVGTISNLNTLSSLWPFLKFILKDPPFLAGILTGLLPTVALSLLMSIVPYFIRWL 487 (827)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHhhhhHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 5689999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHHHHHHhhhhh
Q 007153 442 SKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYG 521 (615)
Q Consensus 442 s~~e~~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~ 521 (615)
+.+||..|+|+.|..++.|+|.|+|+|.|+|.+++++..+.+.+..++|.+++.++|+++|++|+||++|+++||+++.+
T Consensus 488 s~~qG~~S~se~E~~~~~k~~~f~fv~~FlV~Tl~s~fss~v~~~~ke~~s~~~llA~~lpk~SnFfi~~iilqgl~~~~ 567 (827)
T COG5594 488 SYMQGLVSYSEEEIYVQNKYFAFLFVNLFLVVTLASSFSSIVWSLLKEPTSIMTLLANNLPKASNFFISYIILQGLSGFP 567 (827)
T ss_pred HHhcCccchHHHHHHHHhhhhhheeeeehheeeehhHHHHHHHHHhcChHhHHHHHHhccHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCHHHH-HHhcCCCCCCCCccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhh
Q 007153 522 LELSRIVPLIIYHLKRKYLCKTEAEL-KEAWFPGDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQ 600 (615)
Q Consensus 522 ~~ll~~~~l~~~~~~~~~~~~T~re~-~~~~~~~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ 600 (615)
++|+|+++|+...++.++.++|||++ ++...++.|+||..||+.+.+++|+++||+++|+|+.||++||++.|++|||+
T Consensus 568 ~~LLqi~~Ll~~~vl~kf~~~TpR~k~nr~~~~~~f~~G~v~P~~~~l~~I~icYSiisPlILlf~~v~F~~~ylaykY~ 647 (827)
T COG5594 568 GTLLQIVPLLLSLVLGKFKDSTPRQKWNRLETPPSFQFGTVLPQPILLFTITICYSIISPLILLFGAVYFILNYLAYKYN 647 (827)
T ss_pred hHHHHHHHHHHHHhhhhhcCCChHHHHhhccCCCccccccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999898999999999997 45556799999999999999999999999999999999999999999999999
Q ss_pred hheeeecc
Q 007153 601 VMSIFLFI 608 (615)
Q Consensus 601 ll~vy~~~ 608 (615)
++|||+.-
T Consensus 648 l~Yv~~~~ 655 (827)
T COG5594 648 LIYVSNHS 655 (827)
T ss_pred hhhccCCC
Confidence 99999863
No 2
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=2.7e-102 Score=864.45 Aligned_cols=587 Identities=38% Similarity=0.669 Sum_probs=535.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcceecccccCCCCC--CCC--CCCCCCCc-ccchHHhhcCCHHHHHHhcCcc
Q 007153 6 FLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKGLD--PWE--GGSRTRNP-FTWIKEAMSSSEQDVINMSGLD 80 (615)
Q Consensus 6 ~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~~~--p~~--~~~~~~~~-~~Wi~~~~~~~d~~i~~~~GlD 80 (615)
+..+..+|...+..++.+|.+++.++.+.++|.|++...+.+ |.+ ....+++. ++|+.++++++|+|++++||+|
T Consensus 7 ~~~~s~~~~~~~~~~~~~~~~l~l~~~~~~vy~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wl~~~~k~~~~ei~~~~GlD 86 (728)
T KOG1134|consen 7 IGISSTLNLNSAFAFLFLFLFLRLQPRNFRVYLPIWSLKGLRSSPIESKVEPVPSSVNFGWLPALLKIPDEEILEHAGLD 86 (728)
T ss_pred ccccccccchhhHHHHHHHHHHHhhhcceEEEEeeeeeccccCcCccccCCCCCCcccccchHHHhcCCHHHHHHHhcch
Confidence 444455566666777777888888888999999988876532 211 11445566 9999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCcccccCCCCCCCCCCCcccccccCCcCCCCCchHHHHHHHHHHHHH
Q 007153 81 TAVYFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFV 160 (615)
Q Consensus 81 a~~flrflr~~~~lf~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~~~l~~~s~~Nv~~~s~~lw~h~i~~~~~~~~ 160 (615)
|++||||+++++++|+++++++++|++|||+++++..+. +.++++++|++|++.+++++|+|++++|+++++
T Consensus 87 a~~~L~~~~~~~~lf~~~~~l~~~illPVn~~~~~~~~~--------~~~s~~~ls~snv~~~s~~lw~Hv~~~y~~~~~ 158 (728)
T KOG1134|consen 87 AYVFLRFLKLGIKLFAVLSLLSVPILLPVNWTNGNLELG--------NEDSLDKLSISNVQPGSSLLWAHVFFTYLFTFF 158 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheEEeeEEEecCccccc--------ccchhhhhhheeccCCCCCEEEEeehhHHHHHH
Confidence 999999999999999999999999999999999998632 112799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHH
Q 007153 161 TYFLLWRGYKHVSELRADALMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEE 240 (615)
Q Consensus 161 ~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~ 240 (615)
++|++++|+++++.+|+++++++...+.+.|++++++|+ ..+.+..+..+++|+..+|+++.++.+++|..++.++.++
T Consensus 159 ~~~~l~~e~~~~~~~R~~~l~~~~~~~~~~s~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 237 (728)
T KOG1134|consen 159 TLFILYREYKHVASIRQAYLASPKYRPDQSSVLVRNVPP-PDGVSVSVIVRHFFSLNHPVKVRSHQVVYNESKLSKLLSK 237 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcCccccchhhhcccC-CCCCchhhHHhhhhhccCCceeehhHHHhhHHHHHHHHHH
Confidence 999999999999999999999998889999999999993 2333557777778888888999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhhhccCCCCCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEE
Q 007153 241 LEGYK-KKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVF 319 (615)
Q Consensus 241 r~~~~-~~Le~~~~~~~~~~~~~~~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVt 319 (615)
+++.. +.+.+...+.. .++ +.||++|.++|+++|+||||||||++++++++++|.++|+...+.++.+.||||
T Consensus 238 ~~k~~~~~l~~~~~~~~-----~~~-~~rP~~k~~~~~l~gkkvdai~yy~~kl~~l~~~i~~~~~~~~~~~~~~~aFVt 311 (728)
T KOG1134|consen 238 LKKLRENKLYKEHKRLK-----SNP-KKRPKRKLGFCGLFGKKVDAIDYYSEKLQELSEDIEELRESLYEEKPLPAAFVT 311 (728)
T ss_pred HHHHhHHHHHHhhhhhc-----ccc-ccCCcceeeeeeeecceecHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 98884 33333222211 112 279999999999999999999999999999999999999998777789999999
Q ss_pred eCCHHHHHHHHHHhccCCCCceeeecCCCCCCeeecCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHh
Q 007153 320 FTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLK 399 (615)
Q Consensus 320 F~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~ipv~~i~~l~~l~~l~ 399 (615)
|+|+.+|+.|+|..++.++..|.++.||||+||.|+|+.++..+|+.|+++++++++++++||++|+++|++++|++.|+
T Consensus 312 f~sr~~A~~~aq~~~~~~~~~w~~~~APeP~Di~W~nl~i~~~~~~~~~~~~~~~~~~li~f~~iPva~V~~l~nl~~l~ 391 (728)
T KOG1134|consen 312 FKSRYGAAVAAQTQQSLNPTKWLTEFAPEPRDIYWDNLAISYVERYLRRFLVNVALFLLLFFWIIPVAFVQALTNLEGLS 391 (728)
T ss_pred EEeeHHHHHHHHhhhcCCCCceEEEecCCcccceecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhcchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHHHHHHHHHHHHHHhhhhhH
Q 007153 400 KILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTL 479 (615)
Q Consensus 400 ~~~p~l~~~~~~~~~~~~i~~~lp~lil~~~n~llp~i~~~ls~~e~~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~ 479 (615)
+.+||++++.+.++++++++|+||++++.++++++|.++++++++|||.|+|+.|++++.|+|+|+++|+|++++++++.
T Consensus 392 ~~~Pflk~i~~~~~i~~vI~gfLP~l~l~~~~~~lP~~l~~ls~~eG~~s~S~~e~~a~~k~~~F~~~nvFl~~~l~~sa 471 (728)
T KOG1134|consen 392 KVFPFLKPILEMKFISSVITGFLPTLALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYYIFLLVNVFLVVTLSGSA 471 (728)
T ss_pred hccchhhhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHhHHHHHHhhhHHHhhhhHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHhCCcchhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCHHHHHHhcCC-CCCCC
Q 007153 480 FKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAWFP-GDLGY 558 (615)
Q Consensus 480 ~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~ll~~~~l~~~~~~~~~~~~T~re~~~~~~~-~~f~~ 558 (615)
++.+..++++|.+++..+|.++|++++||++|++++|+.|.+++++|+.+++++.+++.+..+|+|++++.+++ +.+++
T Consensus 472 ~~~~~~~l~~p~~i~~~la~~lP~~a~Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~p~~~~~~ 551 (728)
T KOG1134|consen 472 LRQLLSILSTPRLIPKLLAAALPKQASFFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYEPLSSFYF 551 (728)
T ss_pred HHHHHHHhcCHhHHHHHHhhhChhhHHHHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcCCccccch
Confidence 99999999889999999999999999999999999999999999999999999999888899999999999988 88999
Q ss_pred CccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhheeeec
Q 007153 559 GTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQVMSIFLF 607 (615)
Q Consensus 559 ~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ll~vy~~ 607 (615)
|..||+.+++++||++||+++|+|+|||++||++.|+|||||++|||.+
T Consensus 552 g~~yP~~~~~f~i~i~YsviaPlILpF~lvyF~l~y~vyr~ql~yvy~~ 600 (728)
T KOG1134|consen 552 GTIYPRILLIFTIGICYSVIAPLILPFGLVYFCLAYLVYRYQLIYVYNQ 600 (728)
T ss_pred hhhccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhheeecc
Confidence 9999999999999999999999999999999999999999999999994
No 3
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=100.00 E-value=6.6e-60 Score=492.97 Aligned_cols=293 Identities=40% Similarity=0.695 Sum_probs=283.2
Q ss_pred EEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCeeecCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007153 316 ALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTL 395 (615)
Q Consensus 316 AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~~~~~~l~if~~ipv~~i~~l~~l 395 (615)
|||||+++++|+.|+|..++++|++|++++||||+||+|+||+.+..+|..|++++++++++++++|++|++++++++|+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~~~~~~l~i~~~ipv~~v~~l~~l 80 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVNILLFLLIIFWTIPVAFVSALSNL 80 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcccchhhhc-chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHHHHHHHHHHHHHHh
Q 007153 396 DNLKKILPFLKPVIN-ITALKTVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVT 474 (615)
Q Consensus 396 ~~l~~~~p~l~~~~~-~~~~~~~i~~~lp~lil~~~n~llp~i~~~ls~~e~~~t~S~~~~s~~~k~f~f~~~n~~lv~~ 474 (615)
+++++..|+++++.+ ++...++++|++|+++++++|.++|.++++++++|||.|+|+.|+++++|+|+||++|++++++
T Consensus 81 ~~l~~~~~~l~~~~~~~~~~~~~i~~~lp~l~l~~~~~llp~ii~~ls~~e~~~s~S~~~~sv~~k~f~f~~~n~~lv~~ 160 (325)
T PF02714_consen 81 DTLKKVIPFLQWIISFSPWLLSLIQGILPSLLLSIFNALLPIIIRFLSKFEGHKSRSEVERSVLRKLFFFLFFNVFLVPS 160 (325)
T ss_pred cchhccchhhHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998854 5677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCHHHHHHhc-CC
Q 007153 475 VGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIVPLIIYHLKRKYLCKTEAELKEAW-FP 553 (615)
Q Consensus 475 l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~ll~~~~l~~~~~~~~~~~~T~re~~~~~-~~ 553 (615)
+++++++.+.++.++|+++.+.+|.++|++++||++|++++++.+.+++|+|+++++.+.+++++..+||||+++++ ++
T Consensus 161 l~~~~~~~~~~~~~~~~~i~~~l~~~lp~~s~ffi~~ii~~~~~~~~~~Ll~~~~l~~~~~~~~~~~~t~r~~~~~~~~~ 240 (325)
T PF02714_consen 161 LAGTILSALKNIINNPGSILQLLGNFLPNSSNFFINYIILQAFIGSPLELLRPPPLIIYYIRRKFFSKTPRELNELYTEP 240 (325)
T ss_pred hhHHHHHHHHHHHhCcchHHHHHHHHhhhhhHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999988887777779999999988 89
Q ss_pred CCCCCCccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhheeeecc
Q 007153 554 GDLGYGTRVPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQVMSIFLFI 608 (615)
Q Consensus 554 ~~f~~~~~y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ll~vy~~~ 608 (615)
++|+||..||+.+++++++++||+++|+++|+|++||++.|++||||++|||++.
T Consensus 241 ~~f~~~~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky~llyvy~~~ 295 (325)
T PF02714_consen 241 PPFDYGYQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKYNLLYVYRPK 295 (325)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhheeeeccCC
Confidence 9999999999999999999999999999999999999999999999999999965
No 4
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=100.00 E-value=7.1e-35 Score=270.28 Aligned_cols=156 Identities=35% Similarity=0.619 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcceecccccCCC-CCCCCCCCCCCCcccchHHhhcCCHHHHHHhcCcchhH
Q 007153 5 SFLTSLGTSFIIFVVLMCLFAWLSSKPGNTVVYYPNRILKG-LDPWEGGSRTRNPFTWIKEAMSSSEQDVINMSGLDTAV 83 (615)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~F~~lR~~~~~~~iY~pr~~~~~-~~p~~~~~~~~~~~~Wi~~~~~~~d~~i~~~~GlDa~~ 83 (615)
++.+++++|++++++++++|+++|+| ++++|+||...++ .++...+.+++|+|+|++++++++|+|++++||+||++
T Consensus 1 s~~~sl~~~~~i~~~~~~~F~~lR~~--~~~iY~pR~~~~~~~~~~~~~~~~~g~f~Wi~~~~~~~d~~i~~~~GlDa~~ 78 (157)
T PF13967_consen 1 SFLTSLAINLIIFLVLLLLFCILRKR--FPRIYQPRSYLPHPEPERPPPLPSRGFFGWIKPVFKISDDEILRHCGLDAYV 78 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--cHHhcccccccCCcccccCCCCCCCCchHHHHHHHcCCHHHHHHHcCCCHHH
Confidence 58999999999999999999999998 6899999998853 11111124568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeeeecCcccccCCCCCCCCCCCcccccccCCcCCCCCchHHHHHHHHHHHHHHHH
Q 007153 84 YFVFMSTVLGIFALSGIILLPALLPVAATDDSIQAAGKNTTSIGTFNDLDKLSMGNITAKSSRLWAFLVATYWVSFVTYF 163 (615)
Q Consensus 84 flrflr~~~~lf~~~~~~~~~iLlPvn~~~~~~~~~~~~~~~~~~~~~l~~~s~~Nv~~~s~~lw~h~i~~~~~~~~~~~ 163 (615)
|+||+|+++++|+++++++++||+|+|++|++..++. ...++++++|++|++++++++|+|++++|++++++++
T Consensus 79 flrflr~~~~~f~~~~i~~~~vLlPi~~~~~~~~~~~------~~~~~l~~~tisnv~~~s~~lw~h~v~~~i~~~~~~~ 152 (157)
T PF13967_consen 79 FLRFLRMLIKIFLFLSILSLPVLLPINYTGGDDDGDS------DNESGLDRLTISNVPKGSSRLWAHVVFAYIFTFYVLY 152 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeEEeCCCCcccc------ccccccccccHHhhcCCCCeehHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999885321 1127999999999999999999999999999999999
Q ss_pred HHHHH
Q 007153 164 LLWRG 168 (615)
Q Consensus 164 ~l~~e 168 (615)
++++|
T Consensus 153 ~l~~E 157 (157)
T PF13967_consen 153 LLWRE 157 (157)
T ss_pred hheeC
Confidence 99876
No 5
>PF14703 DUF4463: Domain of unknown function (DUF4463)
Probab=99.11 E-value=1.7e-10 Score=95.41 Aligned_cols=71 Identities=41% Similarity=0.701 Sum_probs=58.1
Q ss_pred EecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCC----------CCCCcccccCccCCCC-ccccHHHHHHHH
Q 007153 227 VVTNNKEANKIYEELEGYKKKLARAEAVYAESKSA---GKP----------EGTRPTIKTGFLGLLG-KRVDAIEYYNEK 292 (615)
Q Consensus 227 i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~---~~~----------~~~rP~~~~~~~~~~g-~kvdai~~~~~~ 292 (615)
+|+|.++|++|+++|+++.++||.++.+|.+.... ..+ ...||.++.+++|++| ++||||+||++|
T Consensus 1 i~rd~~~L~~Lv~~R~~~~~kLE~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kVDaIdyy~~e 80 (85)
T PF14703_consen 1 ICRDWSKLEKLVEEREKAVRKLESAESKYLKNANKRPKKRPKKKKKSESSSNKKRPRHRTGFLGLFGGKKVDAIDYYREE 80 (85)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCccccCccccccccCCCCCCCcCCCCCCCcchHHHHHHHH
Confidence 58999999999999999999999999998754321 000 1245677778999988 999999999999
Q ss_pred HHHHH
Q 007153 293 IKEII 297 (615)
Q Consensus 293 l~~l~ 297 (615)
+++|+
T Consensus 81 l~~Ln 85 (85)
T PF14703_consen 81 LKELN 85 (85)
T ss_pred HHHhC
Confidence 99875
No 6
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=99.02 E-value=6.7e-08 Score=105.62 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=140.0
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhcccchhhhcc---hhHHHHHHHHhHHHHHHHHHH
Q 007153 356 NLNIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINI---TALKTVLEAYLPQIALIVFLA 432 (615)
Q Consensus 356 NL~~~~~~r~~R~~~~~~~~~~l~if~~ipv~~i~~l~~l~~l~~~~p~l~~~~~~---~~~~~~i~~~lp~lil~~~n~ 432 (615)
+.+.+.++|..|...+..+++++++... +++.++..++.. +....+. ....+.+.+.+-++++.++|.
T Consensus 109 ~~~~p~~~r~~r~~~s~~ivl~~i~i~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~vl~~v~i~il~~ 179 (452)
T PF04547_consen 109 EPYYPPWKRILRYLVSVPIVLLFILIVI---GIVIGVFYLRIY------LTEIYSGPGKQFLASLIPTVLNAVVILILNF 179 (452)
T ss_pred ccCCcHHHHhhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHH------HHHHhcccchhHHHHHHHHHHHHHHHHhhhh
Confidence 4566778888888666555544333221 122222121111 1111111 123344555555566666777
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHhHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHhCCcchhHHHHHH
Q 007153 433 LLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTVGGTLFKTFKSIEKDPNSIVDVLANSLPGNATFFLTYV 512 (615)
Q Consensus 433 llp~i~~~ls~~e~~~t~S~~~~s~~~k~f~f~~~n~~lv~~l~~~~~~~l~~~~~~p~~i~~~l~~~lp~~s~ffi~yi 512 (615)
+...+...++++|.|+|.++.|.|...|.|.|+++|.+.-.... +.+....+.--+| +.. . -+..+..++
T Consensus 180 iy~~~a~~Lt~~EnhrT~~~ye~sli~K~F~f~fvn~y~~Lfyi-aF~~~~~~~~~~~-~~~-~-------L~~ql~~~~ 249 (452)
T PF04547_consen 180 IYRKLAKKLTDWENHRTESEYENSLIIKVFLFQFVNSYAPLFYI-AFFYGVRQEECQP-CLS-R-------LRIQLFTIM 249 (452)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccCC-CHH-H-------HHHHHHHHH
Confidence 88888999999999999999999999999999999999754433 2221100000011 111 1 122334445
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHh-hcCC---CH--------------HHHHHhcCCCCCCCC---ccccHHHHHHHH
Q 007153 513 ALQFFVGYGLELSRIVPLIIYHLKRK-YLCK---TE--------------AELKEAWFPGDLGYG---TRVPSDMLIVTI 571 (615)
Q Consensus 513 i~~~~~~~~~~ll~~~~l~~~~~~~~-~~~~---T~--------------re~~~~~~~~~f~~~---~~y~~~l~~~~i 571 (615)
+++-+.....|.. .|.+....+++ ...+ ++ .+.++-...++++-. .+|..+..-+-.
T Consensus 250 ~~~qi~~~~~e~~--~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~y~~~g~~~dY~emviQFGy 327 (452)
T PF04547_consen 250 VTKQIINNLLEVV--LPYLKKRYRRKKIRKKQRKKQQDERQENEEENQFLQQWEKEYELPPYDPDGLFDDYLEMVIQFGY 327 (452)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhcccccccccccccchHHHHHHHhcCCCCCcCCchHHHHHHHHHHHH
Confidence 5555555555543 45544444332 1111 10 000112344566643 789999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhheeeec
Q 007153 572 VFCYSCIAPLIIPFGVVYFALGWLILRNQVMSIFLF 607 (615)
Q Consensus 572 ~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ll~vy~~ 607 (615)
+.+||+..|+...++++.-++-.-+|++.+++.+++
T Consensus 328 v~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rR 363 (452)
T PF04547_consen 328 VTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRR 363 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCC
Confidence 999999999999999999999999999999998876
No 7
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.008 Score=65.24 Aligned_cols=108 Identities=21% Similarity=0.321 Sum_probs=74.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHhhhcccchhhhcchhHHHHHHHHhHHHHHHHHHHHHHHH
Q 007153 358 NIKFFQRQIRQYVVYVIVALTIMFYMIPIGLISALTTLDNLKKILPFLKPVINITALKTVLEAYLPQIALIVFLALLPKL 437 (615)
Q Consensus 358 ~~~~~~r~~R~~~~~~~~~~l~if~~ipv~~i~~l~~l~~l~~~~p~l~~~~~~~~~~~~i~~~lp~lil~~~n~llp~i 437 (615)
..+.|.|.+|+..+.+-++.+++....++.+...- ++. |.......| ..-+-.++|++++.++..++..+
T Consensus 260 ~yp~w~~~~~~~~vsvPv~l~c~~i~l~f~l~~f~--ie~------~~~s~~~~~--~~sils~lP~iv~~~li~~~t~~ 329 (647)
T KOG2513|consen 260 YYPEWKRILRRYLVSVPVILLCLCILLSFMLYCFQ--IEV------WVLSDYGGP--LISILSYLPTIVYAVLIPVLTRI 329 (647)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--HHH------HHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999998888877776666665554332 221 122222333 22344678888887776655544
Q ss_pred ----HHHHHHhcCCCchhHHHHHHHhHHHHHHHHHHHHHHhh
Q 007153 438 ----LLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFIGVTV 475 (615)
Q Consensus 438 ----~~~ls~~e~~~t~S~~~~s~~~k~f~f~~~n~~lv~~l 475 (615)
-.++.++|.|.|+|.++++...|.+.|+|+|.++-...
T Consensus 330 Y~k~Ae~Lt~~EN~r~~s~y~~hli~K~~lf~f~nsy~sLFy 371 (647)
T KOG2513|consen 330 YKKLAEFLTKLENHRLESAYQKHLIAKVFLFNFVNSYLSLFY 371 (647)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566899999999999999999999999999974443
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.22 E-value=0.00091 Score=70.04 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=35.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~ 232 (615)
.....+|+|.|||.+++ +++|+++|+++ |.|++|.++.|..
T Consensus 104 ~~~~~~LfVgnLp~~~t----e~~L~~lF~~~--G~V~~v~i~~d~~ 144 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMT----DRELYALFRTI--GPINTCRIMRDYK 144 (346)
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCC
Confidence 36789999999999987 79999999987 5799999987743
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.0065 Score=62.72 Aligned_cols=136 Identities=18% Similarity=0.319 Sum_probs=75.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHH------HHHHHHHHHHHHHHHHHHHhhhcc
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKS 260 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~------l~~~r~~~~~~Le~~~~~~~~~~~ 260 (615)
.+.--++|-.||+... +++|+++||++ |.|.+|.+.+|-..=.. ....|+++.+ +...++..|.
T Consensus 32 ~~~vKlfVgqIprt~s----E~dlr~lFe~y--g~V~einl~kDk~t~~s~gcCFv~~~trk~a~~----a~~Alhn~kt 101 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTAS----EKDLRELFEKY--GNVYEINLIKDKSTGQSKGCCFVKYYTRKEADE----AINALHNQKT 101 (510)
T ss_pred chhhhheeccCCcccc----HHHHHHHHHHh--CceeEEEeecccccCcccceEEEEeccHHHHHH----HHHHhhcccc
Confidence 3444578889999886 89999999998 78999999987543210 1112222221 1111111110
Q ss_pred -CC----------CCCCCC-cccccCccCCCCccccHHHHHHHHHHHHHHH---HHHHHhh-hhccCCCceEEEEeCCHH
Q 007153 261 -AG----------KPEGTR-PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPK---LEAEQKI-TLKEKQLGAALVFFTSRV 324 (615)
Q Consensus 261 -~~----------~~~~~r-P~~~~~~~~~~g~kvdai~~~~~~l~~l~~~---I~~~~~~-~~~~~~~~~AFVtF~s~~ 324 (615)
++ +.+++| +..+.-|.|+..++.. +++++++-.+ |++.+-- ..+....|+|||+|++.+
T Consensus 102 lpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~t-----e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 102 LPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCT-----ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred cCCCCcceeecccchhhhccccchhhhhhhcccccc-----HHHHHHHHHhhCccchhhheecccccccceeEEEEehHH
Confidence 00 001111 1112224444455542 3445555443 2222111 013356899999999999
Q ss_pred HHHHHHHHhccCC
Q 007153 325 AAASAAQSLHAQL 337 (615)
Q Consensus 325 ~a~~a~q~~~~~~ 337 (615)
.|..|...++...
T Consensus 177 ~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 177 MAVAAIKALNGTQ 189 (510)
T ss_pred HHHHHHHhhccce
Confidence 9999999887653
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=96.53 E-value=0.019 Score=52.32 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=30.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+|.|.|||.+.+ +++|+++|+++ |+|.++.++.
T Consensus 33 ~~~~lfVgnL~~~~t----e~~L~~~F~~~--G~I~~v~i~~ 68 (144)
T PLN03134 33 MSTKLFIGGLSWGTD----DASLRDAFAHF--GDVVDAKVIV 68 (144)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEEe
Confidence 467899999999986 89999999986 6888888764
No 11
>PLN03120 nucleic acid binding protein; Provisional
Probab=96.26 E-value=0.029 Score=55.39 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=29.9
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
.+||.|.|||.+.+ +++|+++|+.+ |+|.++.+.
T Consensus 4 ~rtVfVgNLs~~tT----E~dLrefFS~~--G~I~~V~I~ 37 (260)
T PLN03120 4 VRTVKVSNVSLKAT----ERDIKEFFSFS--GDIEYVEMQ 37 (260)
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 58999999999876 89999999987 789998875
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=96.15 E-value=0.037 Score=58.37 Aligned_cols=102 Identities=22% Similarity=0.260 Sum_probs=74.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
+..+|+|.|||.+++ +++|+++|+++ |.|.++.+++|-.
T Consensus 2 ~~~~l~V~nLp~~~~----e~~l~~~F~~~--G~i~~v~i~~d~~----------------------------------- 40 (352)
T TIGR01661 2 SKTNLIVNYLPQTMT----QEEIRSLFTSI--GEIESCKLVRDKV----------------------------------- 40 (352)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHcc--CCEEEEEEEEcCC-----------------------------------
Confidence 356899999999987 79999999997 6899998876421
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (615)
..+..|+|||+|.+.++|..|...+.... ...+.++.
T Consensus 41 -----------------------------------------~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 41 -----------------------------------------TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred -----------------------------------------CCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 01345899999999999999998765432 33455555
Q ss_pred CC------CCCCeeecCcCCchHHHHHHHHHH
Q 007153 346 AP------ESRELIWNNLNIKFFQRQIRQYVV 371 (615)
Q Consensus 346 AP------~P~DIiW~NL~~~~~~r~~R~~~~ 371 (615)
|- ....|.-.||..+..+.-++.++.
T Consensus 80 a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 111 (352)
T TIGR01661 80 ARPSSDSIKGANLYVSGLPKTMTQHELESIFS 111 (352)
T ss_pred ecccccccccceEEECCccccCCHHHHHHHHh
Confidence 42 233577888887777766666543
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.07 E-value=0.02 Score=44.48 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.5
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 192 VlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
|.|.|||.+.+ +++|+++|+++ |.+..+.+..
T Consensus 1 l~v~nlp~~~t----~~~l~~~f~~~--g~i~~~~~~~ 32 (70)
T PF00076_consen 1 LYVGNLPPDVT----EEELRDFFSQF--GKIESIKVMR 32 (70)
T ss_dssp EEEESETTTSS----HHHHHHHHHTT--STEEEEEEEE
T ss_pred cEEcCCCCcCC----HHHHHHHHHHh--hhcccccccc
Confidence 68999999987 79999999996 6677776654
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=96.02 E-value=0.022 Score=64.35 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=86.8
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHH------HHHHHHHHHHHHHHHHHHHhhhccCC-C
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANK------IYEELEGYKKKLARAEAVYAESKSAG-K 263 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~------l~~~r~~~~~~Le~~~~~~~~~~~~~-~ 263 (615)
||.|.|||.+++ +++|+++|+++ |.|.+|.+++|...-.. -....+.+.+.++.........+.-+ .
T Consensus 2 sl~VgnLp~~vt----e~~L~~~F~~~--G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVT----EAKLYDLFKPF--GPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 799999999987 89999999998 67999999988641100 01233334333332211000000000 0
Q ss_pred CCCCCcccc-cC----ccCCCCccccHHHHHHHHHHHHHHHH---HHHHhhh-hccCCCceEEEEeCCHHHHHHHHHHhc
Q 007153 264 PEGTRPTIK-TG----FLGLLGKRVDAIEYYNEKIKEIIPKL---EAEQKIT-LKEKQLGAALVFFTSRVAAASAAQSLH 334 (615)
Q Consensus 264 ~~~~rP~~~-~~----~~~~~g~kvdai~~~~~~l~~l~~~I---~~~~~~~-~~~~~~~~AFVtF~s~~~a~~a~q~~~ 334 (615)
....+|..+ .+ +.+-..+.+|. ++|+++-++. ...+-.. .+.+..|.|||.|++.++|..|.+.+.
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~~-----~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVDN-----KALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred cccccccccccCCCceEEcCCCccCCH-----HHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 000111111 11 11111122221 2233222221 1110000 122457899999999999999998764
Q ss_pred cCC--CCceeee-----------cCCCCCCeeecCcCCchHHHHHHHHHH
Q 007153 335 AQL--VDTWTVS-----------DAPESRELIWNNLNIKFFQRQIRQYVV 371 (615)
Q Consensus 335 ~~~--~~~~~v~-----------~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (615)
... .....+. ..+....|.-.|+..+..+..++.++.
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~ 200 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA 200 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH
Confidence 321 1112211 223345588889988877777777554
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=95.45 E-value=0.048 Score=60.65 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=34.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~ 232 (615)
....+|+|.|||.++. +++|++.|+++ |.|.++.+.+|..
T Consensus 56 ~~~~~lFVgnLp~~~t----Ed~L~~~F~~~--G~I~~vrl~~D~s 95 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLY----EDELVPLFEKA--GPIYELRLMMDFS 95 (578)
T ss_pred CCCCEEEeCCCCCCCC----HHHHHHHHHhh--CCEEEEEEEECCC
Confidence 3468999999999986 89999999997 6899999988843
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=95.40 E-value=0.039 Score=52.94 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.3
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
-|+|-|+|=+.+ ++.|++|||++ |+|+++.++-
T Consensus 14 KifVggL~w~T~----~~~l~~yFeqf--GeI~eavvit 46 (247)
T KOG0149|consen 14 KIFVGGLAWETH----KETLRRYFEQF--GEIVEAVVIT 46 (247)
T ss_pred EEEEcCcccccc----hHHHHHHHHHh--CceEEEEEEe
Confidence 489999998876 79999999998 6777776654
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=95.26 E-value=0.083 Score=55.70 Aligned_cols=36 Identities=8% Similarity=0.211 Sum_probs=30.4
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
.++|+|.|||.+.+ +++|+++|+++ |.|.++.+++|
T Consensus 269 ~~~lfV~NL~~~~~----e~~L~~~F~~f--G~v~~v~i~~d 304 (352)
T TIGR01661 269 GYCIFVYNLSPDTD----ETVLWQLFGPF--GAVQNVKIIRD 304 (352)
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEeEc
Confidence 45799999999875 89999999987 67999988753
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=95.21 E-value=0.056 Score=42.18 Aligned_cols=31 Identities=16% Similarity=0.439 Sum_probs=24.0
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 192 VlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
|+|+|||.+.+ +++|.++|+.+ |.|.++.+.
T Consensus 1 v~i~nlp~~~~----~~~l~~~f~~~--g~v~~v~~~ 31 (70)
T PF14259_consen 1 VYISNLPPSTT----EEDLRNFFSRF--GPVEKVRLI 31 (70)
T ss_dssp EEEESSTTT------HHHHHHHCTTS--SBEEEEEEE
T ss_pred CEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEE
Confidence 68999999876 78999999886 567777765
No 19
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.094 Score=50.58 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=58.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
...||.|+|+|.+++ +.+|++.|..+ |.|.++.+++|-.
T Consensus 188 D~~tvRvtNLsed~~----E~dL~eLf~~f--g~i~rvylardK~----------------------------------- 226 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMR----EDDLEELFRPF--GPITRVYLARDKE----------------------------------- 226 (270)
T ss_pred ccceeEEecCccccC----hhHHHHHhhcc--CccceeEEEEccc-----------------------------------
Confidence 467999999999998 68888888766 6788888876320
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCCCCc--eeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDT--WTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~--~~v~~ 345 (615)
...+.|-|||||.++++|+.|...+....-.+ ++|+.
T Consensus 227 -----------------------------------------TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 227 -----------------------------------------TGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred -----------------------------------------cCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 11356899999999999999998877655443 34555
Q ss_pred C
Q 007153 346 A 346 (615)
Q Consensus 346 A 346 (615)
+
T Consensus 266 s 266 (270)
T KOG0122|consen 266 S 266 (270)
T ss_pred c
Confidence 4
No 20
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=94.89 E-value=0.13 Score=51.71 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=68.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
-..+-+.|+|||-..| +.+|+..|+++ |+|.+|.|+.|.
T Consensus 94 ~~pkRLhVSNIPFrFR----dpDL~aMF~kf--G~VldVEIIfNE----------------------------------- 132 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFR----DPDLRAMFEKF--GKVLDVEIIFNE----------------------------------- 132 (376)
T ss_pred CCCceeEeecCCcccc----CccHHHHHHhh--CceeeEEEEecc-----------------------------------
Confidence 3467899999999999 58899999998 789999998642
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCCC--Cceee-
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTV- 343 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~--~~~~v- 343 (615)
| ...|-+||||++.++|..|.+.+|.... ....|
T Consensus 133 -R------------------------------------------GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 133 -R------------------------------------------GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred -C------------------------------------------CCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 1 1347899999999999999999886532 22222
Q ss_pred ---------ecCCCCCCeeecCcCCch
Q 007153 344 ---------SDAPESRELIWNNLNIKF 361 (615)
Q Consensus 344 ---------~~AP~P~DIiW~NL~~~~ 361 (615)
+.-|-|.-.-|+++....
T Consensus 170 ~ATarV~n~K~~v~p~~~g~~~~~a~~ 196 (376)
T KOG0125|consen 170 NATARVHNKKKKVLPYPNGWKLLPAVG 196 (376)
T ss_pred ccchhhccCCcccCCCccccccccchh
Confidence 223566667788887654
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=94.16 E-value=0.3 Score=55.15 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=32.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
....+|.|+|+|.+.+ +++|+++|+++ |.|.++.+..|.
T Consensus 176 ~~~~~l~V~nl~~~~t----ee~L~~~F~~f--G~i~~~~i~~~~ 214 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVN----EDKLRELFAKF--GEITSAAVMKDG 214 (562)
T ss_pred cCCCeEEEeCCCCcCC----HHHHHHHHHhc--CCEEEEEEEECC
Confidence 3456899999999886 79999999987 678888887663
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=93.57 E-value=0.33 Score=54.20 Aligned_cols=39 Identities=23% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (615)
..+.|||+|++.++|..|.+.+... ....++|..|.+|+
T Consensus 268 ~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 268 IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 3579999999999999999877654 34456777775543
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=92.94 E-value=0.39 Score=51.49 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=29.7
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+||+|+|+|-+.+ +++|+++|+++ |+|..+.+|.
T Consensus 293 ~tVFvRNL~fD~t----EEel~~~fskF--G~v~ya~iV~ 326 (678)
T KOG0127|consen 293 KTVFVRNLPFDTT----EEELKEHFSKF--GEVKYAIIVK 326 (678)
T ss_pred ceEEEecCCcccc----HHHHHHHHHhh--ccceeEEEEe
Confidence 8999999999987 89999999998 6787777763
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=92.73 E-value=0.59 Score=52.40 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=64.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
..++|.|.|||+++. +++|+++|+++ |.|.++.+.+|-.
T Consensus 203 ~~~rLfVgnLp~~vt----eedLk~lFs~F--G~I~svrl~~D~~----------------------------------- 241 (612)
T TIGR01645 203 KFNRIYVASVHPDLS----ETDIKSVFEAF--GEIVKCQLARAPT----------------------------------- 241 (612)
T ss_pred ccceEEeecCCCCCC----HHHHHHHHhhc--CCeeEEEEEecCC-----------------------------------
Confidence 357999999999986 78999999986 6788887754220
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 345 (615)
..+..|+|||.|++.++|..|.+.+... +...++|..
T Consensus 242 -----------------------------------------tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 242 -----------------------------------------GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred -----------------------------------------CCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 0134589999999999999999887654 344567777
Q ss_pred CCCCCCeeec
Q 007153 346 APESRELIWN 355 (615)
Q Consensus 346 AP~P~DIiW~ 355 (615)
|..|-|=.|.
T Consensus 281 Ai~pP~~~~~ 290 (612)
T TIGR01645 281 CVTPPDALLQ 290 (612)
T ss_pred cCCCccccCC
Confidence 7666655564
No 25
>KOG2514 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.05 E-value=1.4 Score=50.08 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=44.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHHHHHHHHHHHH
Q 007153 418 LEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKYFYFTVLNVFI 471 (615)
Q Consensus 418 i~~~lp~lil~~~n~llp~i~~~ls~~e~~~t~S~~~~s~~~k~f~f~~~n~~l 471 (615)
.+..+-.+++.++|.+---+..+++.+|.+.|.|+.|-|..-|.|+||++|...
T Consensus 435 ~a~~in~~~i~~L~~iy~~~a~~lt~~e~prTe~~~ensl~~KiflfqfvN~ys 488 (861)
T KOG2514|consen 435 TAVIINLVVIMILNAIYSNLASRLTNLENPRTESEFENSLILKIFLFQFVNYYS 488 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhcCccchhhhcchhHHHHHHHHHHHhcC
Confidence 333444455666777777788899999999999999999999999999999764
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=91.93 E-value=1.2 Score=48.76 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=30.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
..+||.|.|||.+++ +++|+++|+++ |.|.+|.++.
T Consensus 88 ~~~~l~V~nlp~~~~----~~~l~~~F~~~--G~v~~v~i~~ 123 (457)
T TIGR01622 88 DDRTVFVLQLALKAR----ERDLYEFFSKV--GKVRDVQCIK 123 (457)
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEee
Confidence 478999999999886 78999999987 5788888764
No 27
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=91.41 E-value=0.72 Score=44.25 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCCCeeec
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWN 355 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~ 355 (615)
+-.|.|||+|++..+|..|...++.- -..-|++..|=+++||+=.
T Consensus 50 KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 50 KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 45789999999999998888766542 2335677788888887755
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=90.59 E-value=0.61 Score=45.82 Aligned_cols=115 Identities=19% Similarity=0.297 Sum_probs=65.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
.-||+.|-|+..+.+ ++-|...|.++ |.|.++.+++|. +....+ -.+ ....
T Consensus 5 ~prtlyvgnld~~vt----e~~i~~lf~qi--g~v~~~k~i~~e----------------~~v~wa-----~~p--~nQs 55 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVT----EDFIATLFNQI--GSVTKTKVIFDE----------------LKVNWA-----TAP--GNQS 55 (321)
T ss_pred CCceEEeeccChhhH----HHHHHHHHHhc--cccccceeehhh----------------hccccc-----cCc--ccCC
Confidence 468999999999886 67788888888 678898888871 111100 000 0122
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHH---HHHHHH--hhhhccCCCceEEEEeCCHHHHHHHHHHh
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIP---KLEAEQ--KITLKEKQLGAALVFFTSRVAAASAAQSL 333 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~---~I~~~~--~~~~~~~~~~~AFVtF~s~~~a~~a~q~~ 333 (615)
+|..+.++.-..|.-+..|++ ++|++--. +|.+.| ++....|..|++||+|-+.++|..|.|..
T Consensus 56 k~t~~~hfhvfvgdls~eI~~--e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDN--EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred CCccccceeEEehhcchhcch--HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 344333222223333333332 22322222 222221 11112467899999999999999999865
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=90.07 E-value=0.47 Score=46.36 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=33.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
+.-|||.|+||+.+.+ +++|++||+.. |+|.+|.+.+|
T Consensus 3 ~~g~TV~V~NLS~~tT----E~dLrefFS~~--G~I~~V~I~~D 40 (243)
T PLN03121 3 PGGYTAEVTNLSPKAT----EKDVYDFFSHC--GAIEHVEIIRS 40 (243)
T ss_pred CCceEEEEecCCCCCC----HHHHHHHHHhc--CCeEEEEEecC
Confidence 3469999999999987 89999999986 89999998854
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=89.89 E-value=3.2 Score=45.84 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
+...+|+|.|||.+..+ +++|++.|+++ |.|.++.+.+|
T Consensus 273 ~~~~~l~v~nL~~~~vt---~~~L~~lF~~y--G~V~~vki~~~ 311 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVN---CDRLFNLFCVY--GNVERVKFMKN 311 (481)
T ss_pred CCCCEEEEeCCCCCCCC---HHHHHHHHHhc--CCeEEEEEEeC
Confidence 45679999999974233 89999999987 67888877543
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=89.85 E-value=1.5 Score=48.80 Aligned_cols=36 Identities=8% Similarity=0.217 Sum_probs=29.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+.++|.|.|||.+++ +++|+++|+++ |.|..+.++.
T Consensus 294 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~~~~~~ 329 (509)
T TIGR01642 294 SKDRIYIGNLPLYLG----EDQIKELLESF--GDLKAFNLIK 329 (509)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEe
Confidence 357999999999886 79999999987 5677777653
No 32
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=89.67 E-value=1.6 Score=45.71 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=28.7
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 185 ~~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
....+|+|+|+|||-+.+- ++|++.+++.- |+|+.|.+
T Consensus 40 ~~~r~R~vfItNIpyd~rW----qdLKdLvrekv-Gev~yveL 77 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRW----QDLKDLVREKV-GEVEYVEL 77 (608)
T ss_pred cccccceEEEecCcchhhh----HhHHHHHHHhc-CceEeeee
Confidence 3456889999999999984 78888887763 55655544
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=89.64 E-value=0.28 Score=54.19 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=31.5
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
+++|.|.|||.+.+ +++|++.|+++ |.|.++.++.+
T Consensus 2 s~vv~V~nLp~~~t----e~~L~~~f~~f--G~V~~v~i~~~ 37 (481)
T TIGR01649 2 SPVVHVRNLPQDVV----EADLVEALIPF--GPVSYVMMLPG 37 (481)
T ss_pred ccEEEEcCCCCCCC----HHHHHHHHHhc--CCeeEEEEECC
Confidence 68999999999986 79999999987 78999888764
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=89.12 E-value=1.5 Score=46.10 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=31.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
+.-.-|+|-.||.|+. +++|.-.|++. |+|.++.+..|
T Consensus 81 ~~G~EVfvGkIPrD~~----EdeLvplfEki--G~I~elRLMmD 118 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVF----EDELVPLFEKI--GKIYELRLMMD 118 (506)
T ss_pred CCCceEEecCCCcccc----chhhHHHHHhc--cceeeEEEeec
Confidence 4457899999999987 68999999998 67777777665
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=88.85 E-value=2 Score=47.02 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=30.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+...||+|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 184 p~~~~l~v~nl~~~~t----e~~l~~~f~~~--G~i~~v~~~~ 220 (457)
T TIGR01622 184 PNFLKLYVGNLHFNIT----EQELRQIFEPF--GDIEDVQLHR 220 (457)
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4578999999999886 79999999876 6677776653
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=88.72 E-value=1.3 Score=49.79 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 105 ~~~~rLfVGnLp~~~t----Ee~Lr~lF~~f--G~I~sV~I~~ 141 (612)
T TIGR01645 105 AIMCRVYVGSISFELR----EDTIRRAFDPF--GPIKSINMSW 141 (612)
T ss_pred cCCCEEEEcCCCCCCC----HHHHHHHHHcc--CCEEEEEEee
Confidence 3467999999999887 79999999987 6788887765
No 37
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=87.35 E-value=1 Score=37.81 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=29.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
-|||++|||...+ .+.|.+.+++.++|+..-+.+-.|
T Consensus 2 TTvMirNIPn~~t----~~~L~~~l~~~~~g~yDF~YLPiD 38 (97)
T PF04059_consen 2 TTVMIRNIPNKYT----QEMLIQILDEHFKGKYDFFYLPID 38 (97)
T ss_pred eeEEEecCCCCCC----HHHHHHHHHHhccCcceEEEeeee
Confidence 4999999999997 788888888888787665555544
No 38
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=86.40 E-value=1.1 Score=33.12 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ 336 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~ 336 (615)
.+.|||+|++.++|..|.+.++..
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 599999999999999999987654
No 39
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=85.68 E-value=1.2 Score=47.35 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...+-|.++++|=+.+ .++|.+||+.. .|+++.+.++
T Consensus 8 ~~~~~vr~rGLPwsat----~~ei~~Ff~~~---~I~~~~~~r~ 44 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSAT----EKEILDFFSNC---GIENLEIPRR 44 (510)
T ss_pred CcceEEEecCCCcccc----HHHHHHHHhcC---ceeEEEEecc
Confidence 5678899999998876 78999999865 5777777665
No 40
>smart00362 RRM_2 RNA recognition motif.
Probab=85.14 E-value=1.4 Score=33.40 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=27.4
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
||.|+|+|.+.. +++|+++|+++ |.+.++.+.++
T Consensus 1 ~v~i~~l~~~~~----~~~l~~~~~~~--g~v~~~~~~~~ 34 (72)
T smart00362 1 TLFVGNLPPDVT----EEDLKELFSKF--GPIESVKIPKD 34 (72)
T ss_pred CEEEcCCCCcCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 689999999886 79999999987 56777766543
No 41
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=85.09 E-value=0.8 Score=45.48 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=31.2
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHH
Q 007153 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEA 234 (615)
Q Consensus 192 VlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l 234 (615)
++|-|+|.+.. .++|+..||++ |+|.++-|+.|.+=+
T Consensus 5 LFIGNLp~~~~----~~elr~lFe~y--gkVlECDIvKNYgFV 41 (346)
T KOG0109|consen 5 LFIGNLPREAT----EQELRSLFEQY--GKVLECDIVKNYGFV 41 (346)
T ss_pred hhccCCCcccc----hHHHHHHHHhh--CceEeeeeecccceE
Confidence 56789999876 69999999998 799999999887543
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=83.78 E-value=3.8 Score=41.81 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhh--------ccCCCceEEEEeCCHHHHHHHHHHhccC
Q 007153 293 IKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ 336 (615)
Q Consensus 293 l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (615)
+.++++++.++..+.+ +.++-|.|=|+|++...|..|+|.++..
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 6777788887776652 3467899999999999999999998754
No 43
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=82.82 E-value=1.2 Score=41.12 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeec
Q 007153 303 EQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (615)
Q Consensus 303 ~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (615)
++.......+.|.|||+|++..+|.-|...+..++ ..++.|+.
T Consensus 37 lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 37 LRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred ceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 34444445688999999999999999999887665 44566664
No 44
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=80.89 E-value=13 Score=36.57 Aligned_cols=145 Identities=18% Similarity=0.237 Sum_probs=77.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHH-------H--HHHHHHHHHHHHHHHHHhhhccC
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKI-------Y--EELEGYKKKLARAEAVYAESKSA 261 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l-------~--~~r~~~~~~Le~~~~~~~~~~~~ 261 (615)
-+.|.-+|..++ .++++..|... |+++++.++||--.=+.| + ++.+++...|.....+ .|+
T Consensus 43 NLIvNYLPQ~MT----qdE~rSLF~Si--GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KT- 112 (360)
T KOG0145|consen 43 NLIVNYLPQNMT----QDELRSLFGSI--GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKT- 112 (360)
T ss_pred eeeeeecccccC----HHHHHHHhhcc--cceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cce-
Confidence 455666999987 78999999877 789999999985322111 1 1122233222221110 110
Q ss_pred CCCCCCCcccc---cCccCCCC-ccccHHHHHHHHHHHHHHHHHHH---Hhhh--hccCCCceEEEEeCCHHHHHHHHHH
Q 007153 262 GKPEGTRPTIK---TGFLGLLG-KRVDAIEYYNEKIKEIIPKLEAE---QKIT--LKEKQLGAALVFFTSRVAAASAAQS 332 (615)
Q Consensus 262 ~~~~~~rP~~~---~~~~~~~g-~kvdai~~~~~~l~~l~~~I~~~---~~~~--~~~~~~~~AFVtF~s~~~a~~a~q~ 332 (615)
-+..-.||... -.-+-..| .|. --++|+|++-...-+. |--. ...-..|.+||.|+.+..|..|...
T Consensus 113 IKVSyARPSs~~Ik~aNLYvSGlPkt----MtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 113 IKVSYARPSSDSIKDANLYVSGLPKT----MTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEEEeccCChhhhcccceEEecCCcc----chHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 00111233211 00000111 111 1234555544433221 1111 1223578999999999999999999
Q ss_pred hccCCCCc----eeeecCCCC
Q 007153 333 LHAQLVDT----WTVSDAPES 349 (615)
Q Consensus 333 ~~~~~~~~----~~v~~AP~P 349 (615)
+..++|.. ..|+.|-.|
T Consensus 189 lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCc
Confidence 98887753 457777666
No 45
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=79.79 E-value=20 Score=37.31 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHhcc
Q 007153 310 EKQLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 310 ~~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
..++|-|||.|++.++|..|+|..|.
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 46899999999999999999987554
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=78.44 E-value=3.5 Score=31.21 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=27.3
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+|.|+|+|.+.. +++++++|++. |.+.++.+..
T Consensus 1 ~i~i~~l~~~~~----~~~i~~~~~~~--g~i~~~~~~~ 33 (74)
T cd00590 1 TLFVGNLPPDVT----EEDLRELFSKF--GKVESVRIVR 33 (74)
T ss_pred CEEEeCCCCccC----HHHHHHHHHhc--CCEEEEEEee
Confidence 588999999875 79999999987 6777777654
No 47
>smart00361 RRM_1 RNA recognition motif.
Probab=77.51 E-value=3 Score=32.49 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (615)
...|.|||+|++..+|..|.+.++..
T Consensus 35 ~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 35 HKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 48
>PF07810 TMC: TMC domain; InterPro: IPR012496 These sequences are similar to a region conserved amongst various protein products of the transmembrane channel-like (TMC) gene family, such as Transmembrane channel-like protein 3 (Q7TN63 from SWISSPROT) and EVIN2 (Q8IU68 from SWISSPROT) - this region is termed the TMC domain []. Mutations in these genes are implicated in a number of human conditions, such as deafness and epidermodysplasia verruciformis []. TMC proteins are thought to have important cellular roles, and may be modifiers of ion channels or transporters []. ; GO: 0016021 integral to membrane
Probab=76.24 E-value=22 Score=30.62 Aligned_cols=54 Identities=9% Similarity=0.020 Sum_probs=41.0
Q ss_pred cCCCCCCCCcc-----ccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhheeeeccc
Q 007153 551 WFPGDLGYGTR-----VPSDMLIVTIVFCYSCIAPLIIPFGVVYFALGWLILRNQVMSIFLFIL 609 (615)
Q Consensus 551 ~~~~~f~~~~~-----y~~~l~~~~i~l~Ys~i~Plil~~~~~yf~~~y~v~Ky~ll~vy~~~~ 609 (615)
...++|+.+.. |+|. +..+|+.|||..|+ ++++-+++.+++.|+.+++..+|-.
T Consensus 47 ~g~~eF~i~~nvL~liY~Qt--l~WiG~ffsPlLP~---i~~ik~~i~FYvKk~sll~~c~p~~ 105 (111)
T PF07810_consen 47 PGKPEFDIPKNVLDLIYNQT--LVWIGMFFSPLLPA---INVIKLFILFYVKKFSLLYNCQPPQ 105 (111)
T ss_pred CCCCCccHhhhHHHHHHcch--hhhhhHHhchhHHH---HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34578887664 4553 67889999888877 5667778888999999999888743
No 49
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=75.21 E-value=0.48 Score=38.91 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=18.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHH
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSY 213 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~ 213 (615)
..+.+||+|+|||..+. ++.++|.
T Consensus 49 ~vs~rtVlvsgip~~l~----ee~l~D~ 72 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLD----EEELRDK 72 (88)
T ss_pred cccCCEEEEeCCCCCCC----hhhheee
Confidence 47899999999999654 5555554
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=72.10 E-value=7.6 Score=38.19 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=39.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHhccCCC-----CceeeecCCCCCCeeecCcCCchHHHHHHHHHHH
Q 007153 310 EKQLGAALVFFTSRVAAASAAQSLHAQLV-----DTWTVSDAPESRELIWNNLNIKFFQRQIRQYVVY 372 (615)
Q Consensus 310 ~~~~~~AFVtF~s~~~a~~a~q~~~~~~~-----~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 372 (615)
....|+|||-|++..+|++|...+|.++. ..+.|+.| -+.++|.+||.--.
T Consensus 57 g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~A------------DTdkER~lRRMQQm 112 (371)
T KOG0146|consen 57 GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFA------------DTDKERTLRRMQQM 112 (371)
T ss_pred CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEec------------cchHHHHHHHHHHH
Confidence 35689999999999999999999998752 35667765 24588888887433
No 51
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=69.90 E-value=16 Score=39.47 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=30.9
Q ss_pred Ccc-ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQ-FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~-~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
+.. ++|.|.|||.+.. +++|.+.|++. |.|.++.+++|
T Consensus 15 ~~~~~~v~vgnip~~~s----e~~l~~~~~~~--g~v~s~~~v~D 53 (435)
T KOG0108|consen 15 PGLSSSVFVGNIPYEGS----EEQLLSIFSGV--GPVLSFRLVYD 53 (435)
T ss_pred cccccceEecCCCCccc----HHHHHHHHhcc--Cccceeeeccc
Confidence 444 9999999999987 79999999977 67878777654
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=69.06 E-value=10 Score=40.23 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHH---Hh--hhhccCCCceEEEEeCCHHHHHHHHHHhccC--CC-CceeeecCCCCCCeeecCcCC
Q 007153 288 YYNEKIKEIIPKLEAE---QK--ITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LV-DTWTVSDAPESRELIWNNLNI 359 (615)
Q Consensus 288 ~~~~~l~~l~~~I~~~---~~--~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~-~~~~v~~AP~P~DIiW~NL~~ 359 (615)
-++.+|.-+-++|-+. |- +..+....|+|||||.+...|+.|...+.+. ++ ..+.|...-.-.-..=.|+..
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK 174 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPK 174 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCc
Confidence 4677888887776542 21 1124457899999999999999999988764 22 223333333344444455555
Q ss_pred chHHH
Q 007153 360 KFFQR 364 (615)
Q Consensus 360 ~~~~r 364 (615)
++.+-
T Consensus 175 ~k~ke 179 (506)
T KOG0117|consen 175 TKKKE 179 (506)
T ss_pred cccHH
Confidence 54443
No 53
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=68.61 E-value=6.3 Score=41.42 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=31.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
..+.+|.|.|||.+++ +++|+++|+++ |.|.++.+.+|
T Consensus 191 ~~~~~lfV~nLp~~vt----ee~L~~~F~~f--G~V~~v~i~~d 228 (346)
T TIGR01659 191 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GQIVQKNILRD 228 (346)
T ss_pred cccceeEEeCCCCccc----HHHHHHHHHhc--CCEEEEEEeec
Confidence 3567899999999986 78999999987 67888887754
No 54
>smart00360 RRM RNA recognition motif.
Probab=65.81 E-value=7.9 Score=28.81 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhc
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLH 334 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~ 334 (615)
.+.+.|||+|++..+|..|.+.++
T Consensus 36 ~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 36 KSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCCceEEEEeCCHHHHHHHHHHcC
Confidence 457899999999999999988765
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=64.01 E-value=17 Score=39.55 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=28.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
-|++|+++|.+.+ .+.|.++|++. |.|..+.++.|-
T Consensus 6 ~TlfV~~lp~~~~----~~qL~e~FS~v--GPik~~~vVt~~ 41 (678)
T KOG0127|consen 6 ATLFVSRLPFSST----GEQLEEFFSYV--GPIKHAVVVTNK 41 (678)
T ss_pred ceEEEecCCCccc----hhHHHHhhhcc--cCcceeEEecCC
Confidence 7999999999988 58999999987 456666665543
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=63.75 E-value=9.1 Score=28.62 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=21.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhcc
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
...+.|||+|++..+|..|.+.++.
T Consensus 37 ~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 37 KSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CCCceEEEEeCCHHHHHHHHHHhCC
Confidence 3569999999999999999887653
No 57
>smart00360 RRM RNA recognition motif.
Probab=60.79 E-value=10 Score=28.17 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.3
Q ss_pred EecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 194 VRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 194 V~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
|.|+|.+.. +++|+++|+++ |.|.++.+..+-
T Consensus 1 i~~l~~~~~----~~~l~~~f~~~--g~v~~~~i~~~~ 32 (71)
T smart00360 1 VGNLPPDVT----EEELRELFSKF--GKIESVRLVRDK 32 (71)
T ss_pred CCCCCcccC----HHHHHHHHHhh--CCEeEEEEEeCC
Confidence 468898876 79999999987 578888777653
No 58
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=57.37 E-value=14 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~ 336 (615)
+.+.|||+|++.++|+.|.+.++..
T Consensus 39 ~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 39 SKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred cceEEEEEECCHHHHHHHHHHhCCC
Confidence 4789999999999999999876554
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=56.75 E-value=15 Score=36.12 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=30.1
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
.+||.|.|||.+.+ +++|.++|.++ |.+.++.+.+|
T Consensus 115 ~~~l~v~nL~~~~~----~~~l~~~F~~~--g~~~~~~~~~d 150 (306)
T COG0724 115 NNTLFVGNLPYDVT----EEDLRELFKKF--GPVKRVRLVRD 150 (306)
T ss_pred CceEEEeCCCCCCC----HHHHHHHHHhc--CceeEEEeeec
Confidence 49999999998887 89999999998 56767766654
No 60
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=53.90 E-value=11 Score=39.96 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=31.2
Q ss_pred EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchH
Q 007153 192 VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 233 (615)
Q Consensus 192 VlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~ 233 (615)
|.|.|+|++++ .+.|.+.|+.+ |.|.++.++.|...
T Consensus 79 ~~i~nl~~~~~----~~~~~d~f~~~--g~ilS~kv~~~~~g 114 (369)
T KOG0123|consen 79 VFIKNLDESID----NKSLYDTFSEF--GNILSCKVATDENG 114 (369)
T ss_pred eeecCCCcccC----cHHHHHHHHhh--cCeeEEEEEEcCCC
Confidence 99999999987 58899999988 78999988877654
No 61
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=53.74 E-value=8.8 Score=43.40 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=33.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
++.++|+.|-+||+.++ +++|++.|+++ |+|.++.+..+-
T Consensus 418 sV~SrTLwvG~i~k~v~----e~dL~~~feef--GeiqSi~li~~R 457 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVT----EQDLANLFEEF--GEIQSIILIPPR 457 (894)
T ss_pred eEeeeeeeeccccchhh----HHHHHHHHHhc--ccceeEeeccCC
Confidence 35789999999999987 79999999998 788888776443
No 62
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=50.38 E-value=22 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=24.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
++|-|+|.|.+. .+.+.+||++. |+|.++.+.
T Consensus 2 ~wI~V~Gf~~~~-----~~~vl~~F~~f--GeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDL-----AEEVLEHFASF--GEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchH-----HHHHHHHHHhc--CCEEEEEcC
Confidence 689999999876 56778899985 667665544
No 63
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=49.28 E-value=25 Score=33.93 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.0
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhcc
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
.+.+.|||||.|.+.|..|...+..
T Consensus 75 ~~~pvaFatF~s~q~A~aamnaLNG 99 (284)
T KOG1457|consen 75 VCKPVAFATFTSHQFALAAMNALNG 99 (284)
T ss_pred cccceEEEEecchHHHHHHHHHhcC
Confidence 3568999999999999999887653
No 64
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=44.68 E-value=46 Score=36.83 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=22.1
Q ss_pred CceEEEEeCCHHHHHHHHHHhccCC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQL 337 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~~ 337 (615)
.|.|||+|++..+|..|.+.++...
T Consensus 464 ~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 464 VGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred cceEEEEECCHHHHHHHHHHcCCCE
Confidence 5889999999999999999987653
No 65
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=42.08 E-value=3.7e+02 Score=26.86 Aligned_cols=25 Identities=8% Similarity=0.167 Sum_probs=17.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhh
Q 007153 282 RVDAIEYYNEKIKEIIPKLEAEQKI 306 (615)
Q Consensus 282 kvdai~~~~~~l~~l~~~I~~~~~~ 306 (615)
+++.+-..+++|.+++.+|+..+.+
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454556677888888888876544
No 66
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=40.68 E-value=79 Score=34.99 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=19.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHH
Q 007153 281 KRVDAIEYYNEKIKEIIPKLEAE 303 (615)
Q Consensus 281 ~kvdai~~~~~~l~~l~~~I~~~ 303 (615)
+|-|..+|+.+.+++|+.+++..
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~ 141 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSF 141 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999988764
No 67
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.57 E-value=26 Score=30.80 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCC
Q 007153 11 GTSFIIFVVLMCLFAWLSSKPG 32 (615)
Q Consensus 11 ~~~~~~~~~~~~~F~~lR~~~~ 32 (615)
++.++++.++++.|++.|+|.+
T Consensus 73 v~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3445567777888888887743
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=39.49 E-value=39 Score=34.13 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=32.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
.-+|++|..|+-++. +..|++.|+.+ |.|.++.+|+|
T Consensus 100 Py~TLFv~RLnydT~----EskLrreF~~Y--G~IkrirlV~d 136 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTS----ESKLRREFEKY--GPIKRIRLVRD 136 (335)
T ss_pred ccceeeeeecccccc----HHHHHHHHHhc--CcceeEEEeee
Confidence 347999999998875 79999999998 67999999998
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=37.69 E-value=31 Score=32.26 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=26.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~ 226 (615)
.+++|.|-|+|.+++ ++++++.|-++ |.|.++.
T Consensus 5 ~~~~iyvGNLP~diR----ekeieDlFyKy--g~i~~ie 37 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIR----EKEIEDLFYKY--GRIREIE 37 (241)
T ss_pred ccceEEecCCCcchh----hccHHHHHhhh--cceEEEE
Confidence 578999999999999 68899999888 4555443
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=37.65 E-value=34 Score=32.67 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhc
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLH 334 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~ 334 (615)
+.-|+|||.|+|.+-|.+|+.+..
T Consensus 90 NSKgYAFVEFEs~eVA~IaAETMN 113 (214)
T KOG4208|consen 90 NSKGYAFVEFESEEVAKIAAETMN 113 (214)
T ss_pred CcCceEEEEeccHHHHHHHHHHhh
Confidence 457899999999999999998754
No 71
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=37.47 E-value=4.7e+02 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=17.1
Q ss_pred CCCCccccHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHH
Q 007153 556 LGYGTRVPSDMLIVTIVFCYSCIAPLIIP-FGVVYFALGW 594 (615)
Q Consensus 556 f~~~~~y~~~l~~~~i~l~Ys~i~Plil~-~~~~yf~~~y 594 (615)
..|+...-..+..++-+.+==.+.|..+. |++.|+.-+|
T Consensus 247 ~~ya~~l~v~~i~l~ys~i~Plil~~~~~yf~l~y~v~ky 286 (325)
T PF02714_consen 247 YQYAQMLLVFFIGLFYSPIAPLILPFGLVYFLLKYFVDKY 286 (325)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444333344454433 5555555544
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=37.04 E-value=47 Score=30.94 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=34.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchH
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKE 233 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~ 233 (615)
..+.-|.|-|+|.+.+ +.+|+.-|..+ |.+.+||++++-..
T Consensus 8 ~~~~kVYVGnL~~~a~----k~eLE~~F~~y--G~lrsvWvArnPPG 48 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRAT----KRELERAFSKY--GPLRSVWVARNPPG 48 (195)
T ss_pred CCCceEEeccCCCCcc----hHHHHHHHHhc--CcceeEEEeecCCC
Confidence 4467799999999887 79999999988 67899999986543
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=36.09 E-value=36 Score=28.86 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhcc
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
...|+|||.+++..+|..|+.-+..
T Consensus 55 ~TrGTAFVVYedi~dAk~A~dhlsg 79 (124)
T KOG0114|consen 55 ETRGTAFVVYEDIFDAKKACDHLSG 79 (124)
T ss_pred CcCceEEEEehHhhhHHHHHHHhcc
Confidence 3579999999999999999986543
No 74
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=35.30 E-value=75 Score=25.97 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=24.7
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCCC--CceeeecCCCCCCe
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESREL 352 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~~--~~~~v~~AP~P~DI 352 (615)
..++|.+-|.++..|..|..-+...+. +...|...|.+.|.
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~~ 80 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNREF 80 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S---
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcccc
Confidence 468999999999999999887665543 45667777776654
No 75
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=33.50 E-value=31 Score=36.52 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccCC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQL 337 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~ 337 (615)
...|++||+|.++++|..|...+|..+
T Consensus 74 ~s~gcCFv~~~trk~a~~a~~Alhn~k 100 (510)
T KOG0144|consen 74 QSKGCCFVKYYTRKEADEAINALHNQK 100 (510)
T ss_pred cccceEEEEeccHHHHHHHHHHhhccc
Confidence 468999999999999999999888653
No 76
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=33.29 E-value=1e+02 Score=31.61 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCH
Q 007153 285 AIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSR 323 (615)
Q Consensus 285 ai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~ 323 (615)
.++..+++++.++++|+..|++..+-+.+..|-+.|.+.
T Consensus 44 Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi~vfs~a 82 (297)
T PF11945_consen 44 RVERNRERLQAIQQRIEVAQAKIEKLQGSKKAITVFSPA 82 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccEEEeCcc
Confidence 356667788888888888887776666778888888875
No 77
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.07 E-value=3.6e+02 Score=28.97 Aligned_cols=89 Identities=20% Similarity=0.447 Sum_probs=48.7
Q ss_pred HHHHHh---CCCCcceEEEe-cCchHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccCCCCccccHH
Q 007153 212 SYFKAI---YPDTFYRSMVV-TNNKEA-NKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAI 286 (615)
Q Consensus 212 ~~f~~~---~p~~V~~v~i~-~d~~~l-~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~rP~~~~~~~~~~g~kvdai 286 (615)
+||+++ +|+. ....++ .|.++. ..+.++++++.++++....++++. | ++...+
T Consensus 218 ~Yf~~l~~~f~d~-a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~----------~-----------k~~~k~ 275 (406)
T PF02388_consen 218 EYFENLYDAFGDK-AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKN----------P-----------KKKNKL 275 (406)
T ss_dssp HHHHHHHHHCCCC-EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------T-----------HHHHHH
T ss_pred HHHHHHHHhcCCC-eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------c-----------chhhHH
Confidence 455443 4665 445555 576554 566667777777777776665432 1 111224
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---hcc-CCCceEEEEeCC
Q 007153 287 EYYNEKIKEIIPKLEAEQKIT---LKE-KQLGAALVFFTS 322 (615)
Q Consensus 287 ~~~~~~l~~l~~~I~~~~~~~---~~~-~~~~~AFVtF~s 322 (615)
.-++++++.+++++++.++-. .+. +-++.-||.+.+
T Consensus 276 ~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 276 KELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 446667777777777655421 111 224555677665
No 78
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=31.12 E-value=79 Score=36.19 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC
Q 007153 289 YNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL 337 (615)
Q Consensus 289 ~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~ 337 (615)
+++.|+.+-++.-+.+.-. -..+.++|||+..++.+|+.|.|.+...+
T Consensus 434 ~e~dL~~~feefGeiqSi~-li~~R~cAfI~M~~RqdA~kalqkl~n~k 481 (894)
T KOG0132|consen 434 TEQDLANLFEEFGEIQSII-LIPPRGCAFIKMVRRQDAEKALQKLSNVK 481 (894)
T ss_pred hHHHHHHHHHhcccceeEe-eccCCceeEEEEeehhHHHHHHHHHhccc
Confidence 3455555555555444332 23578999999999999999999987543
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=31.12 E-value=75 Score=29.83 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=32.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHH
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEA 234 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l 234 (615)
-++|-|+|+++|++-. =++|++|+.+. |.|.-..+-+|-..+
T Consensus 113 rSe~RVvVsGLp~SgS----WQDLKDHmRea--GdvCfadv~rDg~Gv 154 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGS----WQDLKDHMREA--GDVCFADVQRDGVGV 154 (241)
T ss_pred ccceeEEEecCCCCCc----hHHHHHHHHhh--CCeeeeeeeccccee
Confidence 4689999999999865 68999999987 566666666665444
No 80
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=30.24 E-value=3.2e+02 Score=25.14 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=20.9
Q ss_pred cCCCCCCe-eecCcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007153 345 DAPESREL-IWNNLNIKFFQRQIRQYVVYVIVALTIMFYMIPI 386 (615)
Q Consensus 345 ~AP~P~DI-iW~NL~~~~~~r~~R~~~~~~~~~~l~if~~ipv 386 (615)
.+|+|+|. .|.|--++.---+--..++.+++..++..|.-|-
T Consensus 33 a~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~ 75 (188)
T KOG4050|consen 33 ARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQ 75 (188)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHH
Confidence 67999997 3655444433322233444444444433444443
No 81
>PLN03121 nucleic acid binding protein; Provisional
Probab=29.45 E-value=88 Score=30.89 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=17.6
Q ss_pred CCCceEEEEeCCHHHHHHHHH
Q 007153 311 KQLGAALVFFTSRVAAASAAQ 331 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q 331 (615)
...+.|||+|+++.++..|..
T Consensus 42 et~gfAfVtF~d~~aaetAll 62 (243)
T PLN03121 42 EYACTAYVTFKDAYALETAVL 62 (243)
T ss_pred CcceEEEEEECCHHHHHHHHh
Confidence 345799999999999988874
No 82
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=29.43 E-value=1.4e+02 Score=22.86 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=29.6
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHh----CCCCcc-----eEEEecCchH
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----YPDTFY-----RSMVVTNNKE 233 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~----~p~~V~-----~v~i~~d~~~ 233 (615)
...+|.|+|+.. +. .+++++||.++ .|.+|+ ++++++...+
T Consensus 4 rpeavhirGvd~-ls----T~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~ 53 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LS----TDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEE 53 (62)
T ss_pred eeceEEEEcCCC-CC----HHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHH
Confidence 345799999854 43 78999999999 455563 6788876544
No 83
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=27.93 E-value=3.8e+02 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 007153 568 IVTIVFCYSCIAPLIIPFGVVYFALGWLI 596 (615)
Q Consensus 568 ~~~i~l~Ys~i~Plil~~~~~yf~~~y~v 596 (615)
..--.++|+.+.|++..|++==|++.=+-
T Consensus 372 ~~p~avfya~v~P~~s~F~l~k~v~rP~~ 400 (546)
T KOG0718|consen 372 LLPSAVFYALVFPITSYFGLKKFVLRPYL 400 (546)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHeecHHH
Confidence 34556788888888777766655554433
No 84
>PRK11020 hypothetical protein; Provisional
Probab=27.13 E-value=3e+02 Score=23.71 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHh
Q 007153 232 KEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQK 305 (615)
Q Consensus 232 ~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~ 305 (615)
.++..|.++.|+..+++..+..+ | ..+-+..+++|++.++.+|+..+.
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~r-------------------------g-d~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLR-------------------------G-DAEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------------------------C-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666667777777777665431 1 122355667778888888876544
No 85
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=26.85 E-value=60 Score=33.52 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=33.1
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHH
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEA 234 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l 234 (615)
...|.|.+||.+.. ++++++||++. |.|..+.+.+|....
T Consensus 97 tkkiFvGG~~~~~~----e~~~r~yfe~~--g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTT----EEDFKDYFEQF--GKVADVVIMYDKTTS 136 (311)
T ss_pred eeEEEecCcCCCCc----hHHHhhhhhcc--ceeEeeEEeeccccc
Confidence 45899999999987 79999999987 578888888876543
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=26.68 E-value=72 Score=26.80 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=21.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHhcc
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
..|+|||-|.+.++|....+..+.
T Consensus 44 N~GYAFVNf~~~~~~~~F~~~f~g 67 (97)
T PF04059_consen 44 NLGYAFVNFTSPQAAIRFYKAFNG 67 (97)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHcC
Confidence 589999999999999998887764
No 87
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=26.18 E-value=2.5e+02 Score=28.17 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=25.2
Q ss_pred cCCCCCCCCChHHHHHHHHHH---hCCCCcceEEEec----CchHHHHHHHHHHHHHHHHHH
Q 007153 196 DLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMVVT----NNKEANKIYEELEGYKKKLAR 250 (615)
Q Consensus 196 ~iP~~~~~~~~~~~l~~~f~~---~~p~~V~~v~i~~----d~~~l~~l~~~r~~~~~~Le~ 250 (615)
.+|+++++.+..+.+..-.++ .+|+.+-....+- +..++.+++++++.+..+++.
T Consensus 171 ~lp~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~ 232 (268)
T PF13234_consen 171 KLPKDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSS 232 (268)
T ss_dssp ---TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 488888875434443333322 2576543322222 234566777776666665554
No 88
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=25.66 E-value=60 Score=30.48 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
+.++.||.|.|||...+ ++.|.+.|-+. |.|.++++.+|-
T Consensus 6 rnqd~tiyvgnld~kvs----~~~l~EL~iqa--gpVv~i~iPkDr 45 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVS----EELLYELFIQA--GPVVNLHIPKDR 45 (203)
T ss_pred cCCCceEEEecCCHHHH----HHHHHHHHHhc--Cceeeeecchhh
Confidence 46789999999999886 68888888777 678888887653
No 89
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=25.15 E-value=5.9e+02 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHhHH
Q 007153 416 TVLEAYLPQIALIVFLALLPKLLLFLSKTEGIPAVSHAVRAASGKY 461 (615)
Q Consensus 416 ~~i~~~lp~lil~~~n~llp~i~~~ls~~e~~~t~S~~~~s~~~k~ 461 (615)
.-+..+..+++-.++..++-.+..++++.+|..+....+.+...+.
T Consensus 203 KTl~A~~~Ti~~~~ls~il~~~~i~~~~l~G~~~E~~~~l~~~~~~ 248 (385)
T COG5438 203 KTLAAFIGTILGTLLSIILAYISIYMTNLSGFGDEDLDELTYLSKN 248 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhHHHhcCCcc
Confidence 3344455566666677788889999999999998888887766665
No 90
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.00 E-value=1.7e+02 Score=19.98 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007153 3 FDSFLTSLGTSFIIFVVLMCLFAWLSSKP 31 (615)
Q Consensus 3 ~~~~~~~l~~~~~~~~~~~~~F~~lR~~~ 31 (615)
+-++.++....+++-++++..|...|||+
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk~ 33 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKKH 33 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 44667777777777777777888888874
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=24.62 E-value=1.1e+02 Score=33.24 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=33.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
.+-.+|.|-||+.+.+ +++|++.|.++ |+|.+|.++++
T Consensus 8 ~~gMRIYVGNLSydVT----EDDLravFSeF--GsVkdVEIpRE 45 (759)
T PLN03213 8 GGGVRLHVGGLGESVG----RDDLLKIFSPM--GTVDAVEFVRT 45 (759)
T ss_pred CcceEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEecc
Confidence 5668999999999987 79999999998 78999998864
No 92
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=24.51 E-value=1.1e+02 Score=30.27 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHhcc
Q 007153 310 EKQLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 310 ~~~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
.+..|++||+|.+..++..|......
T Consensus 229 gKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 229 GKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred cccccceeeeecCHHHHHHHHHhhcc
Confidence 35689999999999999999876543
No 93
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.34 E-value=1.2e+02 Score=23.65 Aligned_cols=36 Identities=28% Similarity=0.242 Sum_probs=26.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCCCCceeeecCCCCCCe
Q 007153 314 GAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPESREL 352 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP~P~DI 352 (615)
....+||+|..+|-.|-+.+.+.+ ..++..|-|++|
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g---i~~~liP~P~~i 37 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG---IPVRLIPTPREI 37 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC---CcEEEeCCChhc
Confidence 467899999999988877766533 345566777766
No 94
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=22.13 E-value=1.2e+02 Score=34.33 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (615)
..|.|||.|.+..+|+.|.+.++.. +.+...++.++
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 4799999999999999999987632 33444444443
No 95
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=21.86 E-value=8e+02 Score=24.45 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=44.1
Q ss_pred hHHHHHHHhHHHHHHHHHHHHH-HhhhhhHHHHHHHHhc-CchHHHHHHHHhCCcchhHHHHHHHHHHhhhhhhhhhhhH
Q 007153 451 SHAVRAASGKYFYFTVLNVFIG-VTVGGTLFKTFKSIEK-DPNSIVDVLANSLPGNATFFLTYVALQFFVGYGLELSRIV 528 (615)
Q Consensus 451 S~~~~s~~~k~f~f~~~n~~lv-~~l~~~~~~~l~~~~~-~p~~i~~~l~~~lp~~s~ffi~yii~~~~~~~~~~ll~~~ 528 (615)
|.+|..+.-|......+...+. +.+.|+....++...+ ++.+..+.++.++|.--.+++-.++..-+...++.++=++
T Consensus 71 s~eqq~~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L~ivP 150 (248)
T PF06790_consen 71 SPEQQNVLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFMLFIVP 150 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566667777766666555554 3344555555554432 4557777888877765444544444333344555555455
Q ss_pred HH
Q 007153 529 PL 530 (615)
Q Consensus 529 ~l 530 (615)
.+
T Consensus 151 GI 152 (248)
T PF06790_consen 151 GI 152 (248)
T ss_pred HH
Confidence 54
No 96
>COG5570 Uncharacterized small protein [Function unknown]
Probab=21.08 E-value=3.4e+02 Score=19.87 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhh
Q 007153 233 EANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKI 306 (615)
Q Consensus 233 ~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~ 306 (615)
.|..|.+++..+.+++..+.+ +|. ...-+|.-++.+--++.++|++++.+
T Consensus 6 hl~eL~kkHg~le~ei~ea~n--------------~Ps----------~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 6 HLAELEKKHGNLEREIQEAMN--------------SPS----------SDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHhhchHHHHHHHHhc--------------CCC----------cchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666777777776666532 331 12224555666556777788776643
No 97
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=20.98 E-value=1.4e+02 Score=25.41 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
-.+-+.|+|+|.+.+ .++.-+.|.++ |.|..+.+.
T Consensus 17 vnriLyirNLp~~IT----seemydlFGky--g~IrQIRiG 51 (124)
T KOG0114|consen 17 VNRILYIRNLPFKIT----SEEMYDLFGKY--GTIRQIRIG 51 (124)
T ss_pred hheeEEEecCCcccc----HHHHHHHhhcc--cceEEEEec
Confidence 357889999999998 57788888887 566665554
No 98
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=20.81 E-value=3.2e+02 Score=19.89 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=13.6
Q ss_pred ccCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 007153 275 FLGLLGKRVDAIEYYNEKIKEIIPKLEAEQ 304 (615)
Q Consensus 275 ~~~~~g~kvdai~~~~~~l~~l~~~I~~~~ 304 (615)
.|.+||+..|.-+. .+=+++++.+++...
T Consensus 22 ~CPlC~r~l~~e~~-~~li~~~~~~i~~~~ 50 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR-QELIKKYKSEIEELP 50 (54)
T ss_dssp E-TTT--EE-HHHH-HHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHH-HHHHHHHHHHHHhhh
Confidence 57788887775433 444455555555444
No 99
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=20.78 E-value=1e+02 Score=31.85 Aligned_cols=38 Identities=26% Similarity=0.189 Sum_probs=27.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC---CCCceeeecCCC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ---LVDTWTVSDAPE 348 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~---~~~~~~v~~AP~ 348 (615)
...++|||+|.+..+|..|+....+. +..++.+..++.
T Consensus 262 ~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 262 PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45679999999999999998765442 344556666654
No 100
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=20.08 E-value=1.2e+02 Score=29.10 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=31.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
..+|+.|.||--... .+.|+.-|+++ |.|.+|.|-+|-
T Consensus 12 gm~SLkVdNLTyRTs----pd~LrrvFekY--G~vgDVyIPrdr 49 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTS----PDDLRRVFEKY--GRVGDVYIPRDR 49 (256)
T ss_pred cceeEEecceeccCC----HHHHHHHHHHh--Ccccceeccccc
Confidence 468899999987654 89999999998 788888887653
Done!