Query 007153
Match_columns 615
No_of_seqs 208 out of 948
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxi_A RNA-binding protein 10; 97.6 0.00019 6.4E-09 58.7 8.0 36 189-229 1-36 (91)
2 4fxv_A ELAV-like protein 1; RN 97.6 0.00023 8E-09 59.2 8.6 78 187-346 17-96 (99)
3 2dnz_A Probable RNA-binding pr 97.6 0.00053 1.8E-08 56.2 10.6 82 187-350 3-86 (95)
4 1x5s_A Cold-inducible RNA-bind 97.4 0.001 3.5E-08 55.3 10.8 38 186-229 9-46 (102)
5 3s8s_A Histone-lysine N-methyl 97.4 0.00047 1.6E-08 58.6 8.6 79 187-347 4-84 (110)
6 2jrs_A RNA-binding protein 39; 97.4 0.00069 2.4E-08 57.3 9.3 84 186-351 23-108 (108)
7 4a8x_A RNA-binding protein wit 97.4 0.00045 1.5E-08 55.7 7.8 82 187-349 2-85 (88)
8 3p5t_L Cleavage and polyadenyl 97.4 0.00036 1.2E-08 56.8 7.1 81 190-350 2-84 (90)
9 1whw_A Hypothetical protein ri 97.4 0.0011 3.7E-08 54.8 10.1 82 187-350 6-89 (99)
10 2lkz_A RNA-binding protein 5; 97.4 0.00059 2E-08 56.3 8.2 40 186-229 6-45 (95)
11 1x5t_A Splicing factor 3B subu 97.3 0.001 3.6E-08 54.5 9.5 79 187-347 3-84 (96)
12 2dgp_A Bruno-like 4, RNA bindi 97.3 0.002 6.9E-08 53.9 11.5 82 186-349 10-96 (106)
13 1x5u_A Splicing factor 3B subu 97.3 0.0015 5E-08 54.7 10.5 82 186-349 12-95 (105)
14 2dgs_A DAZ-associated protein 97.3 0.0017 5.8E-08 53.6 10.8 38 186-229 7-44 (99)
15 3mdf_A Peptidyl-prolyl CIS-tra 97.3 0.00075 2.6E-08 53.9 8.3 37 187-229 5-41 (85)
16 2x1f_A MRNA 3'-END-processing 97.3 0.0011 3.7E-08 54.5 9.2 80 189-350 2-83 (96)
17 3bs9_A Nucleolysin TIA-1 isofo 97.3 0.00074 2.5E-08 54.3 8.0 38 187-230 4-41 (87)
18 2cpz_A CUG triplet repeat RNA- 97.3 0.0014 4.7E-08 55.9 9.9 37 187-229 23-59 (115)
19 2dgv_A HnRNP M, heterogeneous 97.3 0.0012 4.3E-08 53.5 9.0 37 186-228 5-41 (92)
20 3md1_A Nuclear and cytoplasmic 97.2 0.0012 4.2E-08 52.4 8.7 77 189-347 1-79 (83)
21 2e5h_A Zinc finger CCHC-type a 97.2 0.0012 4.3E-08 53.8 8.9 38 186-229 13-50 (94)
22 1fxl_A Paraneoplastic encephal 97.2 0.0018 6.2E-08 58.5 10.8 100 188-369 1-108 (167)
23 2fy1_A RNA-binding motif prote 97.2 0.0024 8.1E-08 54.6 10.8 37 187-229 5-41 (116)
24 2do4_A Squamous cell carcinoma 97.2 0.0016 5.4E-08 53.9 9.4 80 187-349 15-96 (100)
25 2cph_A RNA binding motif prote 97.2 0.0027 9.3E-08 53.1 10.7 83 186-349 12-97 (107)
26 2cqi_A Nucleolysin TIAR; RNA r 97.2 0.0034 1.2E-07 52.2 11.1 38 186-229 12-49 (103)
27 2cq3_A RNA-binding protein 9; 97.2 0.0035 1.2E-07 52.1 11.2 38 186-229 12-49 (103)
28 2cqc_A Arginine/serine-rich sp 97.2 0.0016 5.3E-08 53.3 8.8 38 186-229 12-49 (95)
29 4f25_A Polyadenylate-binding p 97.2 0.0013 4.4E-08 56.2 8.6 36 188-229 4-39 (115)
30 2dnh_A Bruno-like 5, RNA bindi 97.2 0.0025 8.5E-08 53.2 10.2 37 187-229 13-49 (105)
31 2dgo_A Cytotoxic granule-assoc 97.1 0.0026 8.8E-08 54.1 10.2 38 186-229 12-49 (115)
32 2div_A TRNA selenocysteine ass 97.1 0.0028 9.6E-08 52.2 10.2 38 186-229 6-44 (99)
33 2cqb_A Peptidyl-prolyl CIS-tra 97.1 0.0017 5.9E-08 53.9 8.6 38 186-229 9-46 (102)
34 3ucg_A Polyadenylate-binding p 97.1 0.0018 6.3E-08 52.1 8.4 37 188-230 5-41 (89)
35 2ywk_A Putative RNA-binding pr 97.1 0.0019 6.6E-08 52.7 8.6 38 186-229 13-50 (95)
36 1x4h_A RNA-binding protein 28; 97.1 0.0033 1.1E-07 53.0 10.2 37 187-229 13-49 (111)
37 1p27_B RNA-binding protein 8A; 97.1 0.0028 9.7E-08 52.9 9.7 37 187-229 21-57 (106)
38 2cqg_A TDP-43, TAR DNA-binding 97.1 0.0023 7.9E-08 53.2 9.1 37 187-229 13-49 (103)
39 2dnm_A SRP46 splicing factor; 97.1 0.0023 7.9E-08 53.2 9.0 37 187-229 11-47 (103)
40 1b7f_A Protein (SXL-lethal pro 97.0 0.0026 9E-08 57.6 10.0 100 188-369 2-109 (168)
41 1p1t_A Cleavage stimulation fa 97.0 0.0017 5.7E-08 54.1 7.7 81 187-349 6-88 (104)
42 2dhg_A TRNA selenocysteine ass 97.0 0.0039 1.3E-07 51.9 10.0 39 186-229 6-44 (104)
43 2d9p_A Polyadenylate-binding p 97.0 0.0024 8.4E-08 53.1 8.7 38 186-229 12-49 (103)
44 1wi8_A EIF-4B, eukaryotic tran 97.0 0.0032 1.1E-07 52.5 9.4 37 186-229 12-48 (104)
45 1oo0_B CG8781-PA, drosophila Y 97.0 0.0032 1.1E-07 53.0 9.5 38 186-229 23-60 (110)
46 2cqd_A RNA-binding region cont 97.0 0.0035 1.2E-07 53.4 9.7 38 186-229 14-51 (116)
47 3s7r_A Heterogeneous nuclear r 97.0 0.0018 6.1E-08 52.0 7.4 39 186-230 8-46 (87)
48 2cq0_A Eukaryotic translation 97.0 0.0023 7.7E-08 53.3 8.2 38 186-229 12-49 (103)
49 2cpf_A RNA binding motif prote 97.0 0.0023 7.8E-08 52.7 8.2 38 187-230 3-40 (98)
50 2dnp_A RNA-binding protein 14; 97.0 0.0059 2E-07 49.3 10.4 36 186-227 6-41 (90)
51 2cqp_A RNA-binding protein 12; 97.0 0.0012 4.3E-08 54.3 6.3 39 312-350 56-96 (98)
52 2kt5_A RNA and export factor-b 97.0 0.0056 1.9E-07 52.8 10.8 37 187-229 33-69 (124)
53 2la6_A RNA-binding protein FUS 97.0 0.0043 1.5E-07 51.1 9.6 33 186-224 10-42 (99)
54 2a3j_A U1 small nuclear ribonu 96.9 0.0029 9.9E-08 55.1 8.7 44 312-355 71-116 (127)
55 1x4a_A Splicing factor, argini 96.9 0.007 2.4E-07 50.8 11.0 35 187-227 20-54 (109)
56 3ulh_A THO complex subunit 4; 96.9 0.0033 1.1E-07 52.6 8.8 38 186-229 26-63 (107)
57 2err_A Ataxin-2-binding protei 96.9 0.0037 1.3E-07 52.7 9.1 38 186-229 26-63 (109)
58 1h2v_Z 20 kDa nuclear CAP bind 96.9 0.0036 1.2E-07 56.5 9.5 80 187-348 37-118 (156)
59 3lqv_A PRE-mRNA branch site pr 96.9 0.0047 1.6E-07 52.4 9.7 95 187-368 6-102 (115)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.9 0.004 1.4E-07 54.8 9.6 37 187-229 61-97 (140)
61 3ex7_B RNA-binding protein 8A; 96.9 0.0047 1.6E-07 53.4 9.7 38 186-229 19-56 (126)
62 2ki2_A SS-DNA binding protein 96.9 0.0018 6.1E-08 52.4 6.6 34 190-229 2-35 (90)
63 1s79_A Lupus LA protein; RRM, 96.9 0.003 1E-07 52.8 8.1 37 187-229 9-45 (103)
64 2dgt_A RNA-binding protein 30; 96.9 0.0072 2.5E-07 49.0 10.2 36 186-227 7-42 (92)
65 2dgx_A KIAA0430 protein; RRM d 96.9 0.0083 2.8E-07 49.1 10.6 37 186-228 6-46 (96)
66 1uaw_A Mouse-musashi-1; RNP-ty 96.9 0.0023 8E-08 49.9 6.8 34 190-229 1-34 (77)
67 2mss_A Protein (musashi1); RNA 96.9 0.0034 1.2E-07 48.7 7.7 32 191-228 1-32 (75)
68 2dnq_A RNA-binding protein 4B; 96.8 0.0086 3E-07 48.3 10.4 36 186-227 5-40 (90)
69 3ns6_A Eukaryotic translation 96.8 0.0018 6.1E-08 53.8 6.3 77 188-346 5-90 (100)
70 2khc_A Testis-specific RNP-typ 96.8 0.0029 9.8E-08 54.1 7.8 38 186-229 37-74 (118)
71 2kxn_B Transformer-2 protein h 96.8 0.0047 1.6E-07 53.9 9.3 78 187-346 44-123 (129)
72 1iqt_A AUF1, heterogeneous nuc 96.8 0.0024 8.2E-08 49.6 6.6 32 191-228 1-32 (75)
73 2cpe_A RNA-binding protein EWS 96.8 0.0062 2.1E-07 51.5 9.7 36 311-346 63-100 (113)
74 2dha_A FLJ20171 protein; RRM d 96.8 0.0026 9E-08 55.0 7.4 39 187-229 21-61 (123)
75 2dgw_A Probable RNA-binding pr 96.8 0.0047 1.6E-07 50.0 8.6 37 186-229 7-43 (91)
76 1x4c_A Splicing factor, argini 96.8 0.0058 2E-07 51.3 9.3 35 187-227 13-47 (108)
77 2dng_A Eukaryotic translation 96.8 0.0051 1.8E-07 51.1 8.8 37 186-229 12-48 (103)
78 2ek1_A RNA-binding protein 12; 96.8 0.002 7E-08 52.6 6.0 34 187-226 13-46 (95)
79 2cpd_A Apobec-1 stimulating pr 96.8 0.011 3.7E-07 48.6 10.6 36 186-225 12-47 (99)
80 2e44_A Insulin-like growth fac 96.8 0.012 4.1E-07 48.0 10.8 33 187-225 13-45 (96)
81 2do0_A HnRNP M, heterogeneous 96.8 0.0065 2.2E-07 51.4 9.4 38 186-229 12-49 (114)
82 1x4g_A Nucleolysin TIAR; struc 96.8 0.0092 3.2E-07 50.1 10.3 36 187-228 23-58 (109)
83 2cpj_A Non-POU domain-containi 96.8 0.0082 2.8E-07 49.4 9.7 77 186-350 12-90 (99)
84 3md3_A Nuclear and cytoplasmic 96.7 0.008 2.7E-07 54.1 10.5 33 190-228 1-33 (166)
85 3r27_A HnRNP L, heterogeneous 96.7 0.0087 3E-07 49.6 9.6 38 185-228 17-54 (100)
86 1x4e_A RNA binding motif, sing 96.7 0.0035 1.2E-07 50.0 7.1 37 187-229 3-39 (85)
87 2dis_A Unnamed protein product 96.7 0.0097 3.3E-07 49.8 10.1 37 187-228 6-42 (109)
88 2rs2_A Musashi-1, RNA-binding 96.7 0.0057 2E-07 51.5 8.6 37 187-229 23-59 (109)
89 2jvr_A Nucleolar protein 3; RN 96.7 0.0074 2.5E-07 51.1 9.2 35 187-226 26-60 (111)
90 3nmr_A Cugbp ELAV-like family 96.7 0.0073 2.5E-07 54.9 10.0 102 188-369 2-115 (175)
91 1wf1_A RNA-binding protein RAL 96.7 0.0071 2.4E-07 50.9 9.1 35 187-227 25-60 (110)
92 1u6f_A Tcubp1, RNA-binding pro 96.7 0.0063 2.2E-07 53.6 9.1 37 187-229 40-76 (139)
93 2dgu_A Heterogeneous nuclear r 96.7 0.011 3.9E-07 48.9 10.2 34 187-226 9-42 (103)
94 2f3j_A RNA and export factor b 96.7 0.0069 2.4E-07 56.0 9.6 85 187-354 86-172 (177)
95 4f02_A Polyadenylate-binding p 96.7 0.0082 2.8E-07 57.1 10.5 101 187-369 13-123 (213)
96 2dnl_A Cytoplasmic polyadenyla 96.7 0.0042 1.4E-07 52.8 7.4 34 187-227 6-39 (114)
97 2j76_E EIF-4B, EIF4B, eukaryot 96.6 0.0031 1.1E-07 52.2 6.2 37 186-229 16-52 (100)
98 1nu4_A U1A RNA binding domain; 96.6 0.0057 2E-07 50.0 7.8 40 313-352 51-92 (97)
99 1wf0_A TDP-43, TAR DNA-binding 96.6 0.0033 1.1E-07 50.6 6.2 35 187-227 3-37 (88)
100 2dh8_A DAZ-associated protein 96.6 0.0045 1.5E-07 51.6 7.2 39 186-230 13-51 (105)
101 1wex_A Hypothetical protein (r 96.6 0.015 5.3E-07 48.5 10.3 37 186-228 12-48 (104)
102 3d2w_A TAR DNA-binding protein 96.6 0.0047 1.6E-07 50.0 6.9 37 186-228 8-44 (89)
103 1x5o_A RNA binding motif, sing 96.6 0.011 3.7E-07 50.1 9.4 37 187-229 23-59 (114)
104 2kn4_A Immunoglobulin G-bindin 96.6 0.012 4E-07 53.0 10.2 37 187-229 68-104 (158)
105 2qfj_A FBP-interacting repress 96.6 0.015 5.2E-07 54.9 11.5 100 188-369 27-145 (216)
106 2lea_A Serine/arginine-rich sp 96.6 0.0075 2.6E-07 53.0 8.5 37 187-229 45-81 (135)
107 1x4b_A Heterogeneous nuclear r 96.6 0.0086 3E-07 50.9 8.7 37 188-230 26-62 (116)
108 1why_A Hypothetical protein ri 96.5 0.017 5.8E-07 47.3 10.2 36 186-227 14-49 (97)
109 1whx_A Hypothetical protein ri 96.5 0.0072 2.5E-07 51.1 8.1 35 187-227 8-42 (111)
110 2jwn_A Embryonic polyadenylate 96.5 0.0077 2.6E-07 51.8 8.3 36 188-229 35-70 (124)
111 2e5j_A Methenyltetrahydrofolat 96.5 0.024 8.1E-07 46.4 10.8 38 312-349 55-94 (97)
112 2hvz_A Splicing factor, argini 96.4 0.018 6.1E-07 47.5 9.8 33 191-229 2-34 (101)
113 3n9u_C Cleavage and polyadenyl 96.4 0.011 3.8E-07 53.4 9.1 80 187-346 53-134 (156)
114 1wg5_A Heterogeneous nuclear r 96.4 0.0083 2.8E-07 50.0 7.7 36 187-228 13-49 (104)
115 2krb_A Eukaryotic translation 96.4 0.008 2.7E-07 47.4 7.1 37 189-227 1-39 (81)
116 2cq4_A RNA binding motif prote 96.4 0.0056 1.9E-07 51.9 6.6 36 188-229 24-59 (114)
117 2hgl_A HNRPF protein, heteroge 96.4 0.0066 2.3E-07 53.5 7.1 37 187-229 42-81 (136)
118 2lmi_A GRSF-1, G-rich sequence 96.4 0.0092 3.1E-07 50.0 7.7 38 187-228 9-47 (107)
119 3beg_B Splicing factor, argini 96.4 0.01 3.5E-07 50.5 8.0 35 187-227 14-48 (115)
120 2jvo_A Nucleolar protein 3; nu 96.4 0.017 6E-07 48.4 9.4 35 187-227 29-63 (108)
121 1l3k_A Heterogeneous nuclear r 96.3 0.018 6E-07 53.5 10.3 39 186-230 10-48 (196)
122 2cpy_A RNA-binding protein 12; 96.3 0.009 3.1E-07 50.7 7.5 37 187-229 13-50 (114)
123 2cjk_A Nuclear polyadenylated 96.3 0.0058 2E-07 55.3 6.7 100 188-369 2-107 (167)
124 2cpi_A CCR4-NOT transcription 96.3 0.0053 1.8E-07 51.9 5.9 82 187-347 13-99 (111)
125 1x4f_A Matrin 3; structural ge 96.3 0.011 3.7E-07 50.1 7.7 35 187-227 23-58 (112)
126 2la4_A Nuclear and cytoplasmic 96.3 0.017 5.7E-07 47.7 8.8 35 187-227 25-59 (101)
127 2cpx_A Hypothetical protein FL 96.3 0.012 4E-07 49.9 8.0 36 311-346 65-102 (115)
128 2kvi_A Nuclear polyadenylated 96.3 0.014 4.8E-07 47.7 8.2 36 186-227 7-43 (96)
129 2dnn_A RNA-binding protein 12; 96.3 0.0092 3.2E-07 50.3 7.0 35 188-229 15-49 (109)
130 1fj7_A Nucleolin RBD1, protein 96.3 0.011 3.7E-07 48.8 7.4 36 311-347 56-93 (101)
131 2xnq_A Nuclear polyadenylated 96.2 0.029 9.9E-07 46.0 9.9 36 186-227 19-55 (97)
132 1rk8_A CG8781-PA, CG8781-PA pr 96.2 0.017 5.7E-07 52.6 9.2 38 186-229 69-106 (165)
133 1wez_A HnRNP H', FTP-3, hetero 96.2 0.0069 2.4E-07 50.4 6.1 36 187-229 13-48 (102)
134 2i2y_A Fusion protein consists 96.2 0.031 1.1E-06 49.8 10.8 77 186-349 70-148 (150)
135 2fc8_A NCL protein; structure 96.2 0.016 5.4E-07 47.9 8.3 38 312-349 53-92 (102)
136 2nlw_A Eukaryotic translation 96.2 0.015 5E-07 48.5 7.9 82 188-349 14-100 (105)
137 2db1_A Heterogeneous nuclear r 96.1 0.0092 3.2E-07 51.0 6.6 39 187-229 15-54 (118)
138 3sde_A Paraspeckle component 1 96.1 0.042 1.4E-06 53.9 12.0 95 187-369 20-116 (261)
139 2pe8_A Splicing factor 45; RRM 96.1 0.022 7.7E-07 47.6 8.4 84 187-348 6-93 (105)
140 1wg1_A KIAA1579 protein, homol 96.1 0.016 5.6E-07 46.4 7.3 37 314-350 41-79 (88)
141 2m2b_A RNA-binding protein 10; 96.0 0.016 5.4E-07 50.5 7.7 37 187-229 21-59 (131)
142 2fc9_A NCL protein; structure 96.0 0.023 7.9E-07 46.8 8.2 36 312-347 52-89 (101)
143 2qfj_A FBP-interacting repress 96.0 0.022 7.5E-07 53.8 9.1 38 187-230 123-160 (216)
144 2hgn_A Heterogeneous nuclear r 95.9 0.0085 2.9E-07 53.0 5.5 36 187-229 44-79 (139)
145 3md3_A Nuclear and cytoplasmic 95.9 0.027 9.3E-07 50.5 9.1 38 187-230 85-122 (166)
146 3nmr_A Cugbp ELAV-like family 95.9 0.029 1E-06 50.8 9.1 37 187-229 93-129 (175)
147 2cqh_A IGF-II mRNA-binding pro 95.9 0.03 1E-06 45.2 8.2 36 313-348 44-82 (93)
148 2adc_A Polypyrimidine tract-bi 95.8 0.075 2.6E-06 50.9 12.2 36 187-228 32-68 (229)
149 1b7f_A Protein (SXL-lethal pro 95.8 0.029 1E-06 50.5 8.6 37 187-229 87-123 (168)
150 2wbr_A GW182, gawky, LD47780P; 95.8 0.058 2E-06 43.3 9.1 72 187-346 5-78 (89)
151 1wel_A RNA-binding protein 12; 95.7 0.0097 3.3E-07 51.3 5.0 32 187-224 23-54 (124)
152 3q2s_C Cleavage and polyadenyl 95.7 0.019 6.5E-07 55.3 7.5 39 188-230 67-105 (229)
153 3smz_A Protein raver-1, ribonu 95.7 0.04 1.4E-06 54.6 10.1 57 313-369 57-115 (284)
154 2hgm_A HNRPF protein, heteroge 95.7 0.017 5.7E-07 50.1 6.1 35 187-228 40-76 (126)
155 1fxl_A Paraneoplastic encephal 95.6 0.043 1.5E-06 49.2 9.1 37 187-229 86-122 (167)
156 3tyt_A Heterogeneous nuclear r 95.6 0.079 2.7E-06 50.0 11.1 36 187-228 2-38 (205)
157 1qm9_A Polypyrimidine tract-bi 95.6 0.069 2.4E-06 49.6 10.6 35 188-228 2-37 (198)
158 2g4b_A Splicing factor U2AF 65 95.5 0.028 9.5E-07 50.9 7.3 38 187-230 92-129 (172)
159 2e5g_A U6 snRNA-specific termi 95.5 0.058 2E-06 43.7 8.5 33 187-225 6-38 (94)
160 2voo_A Lupus LA protein; RNA-b 95.4 0.024 8.1E-07 53.1 6.8 35 189-229 109-143 (193)
161 2cjk_A Nuclear polyadenylated 95.3 0.056 1.9E-06 48.6 8.8 36 188-229 86-121 (167)
162 2ghp_A U4/U6 snRNA-associated 95.1 0.093 3.2E-06 52.1 10.5 99 187-371 39-139 (292)
163 1fje_B Nucleolin RBD12, protei 95.1 0.0058 2E-07 55.8 1.3 37 311-347 134-172 (175)
164 1l3k_A Heterogeneous nuclear r 95.1 0.047 1.6E-06 50.6 7.6 38 187-230 102-139 (196)
165 3pgw_S U1-70K; protein-RNA com 95.0 0.069 2.4E-06 56.6 9.6 85 188-354 101-187 (437)
166 4f02_A Polyadenylate-binding p 95.0 0.056 1.9E-06 51.2 8.0 36 188-229 102-137 (213)
167 2yh0_A Splicing factor U2AF 65 94.9 0.063 2.1E-06 49.8 8.0 78 187-346 112-191 (198)
168 3egn_A RNA-binding protein 40; 94.9 0.024 8.2E-07 50.1 4.7 33 186-224 42-74 (143)
169 3smz_A Protein raver-1, ribonu 94.8 0.064 2.2E-06 53.1 8.3 82 187-350 182-265 (284)
170 1sjr_A Polypyrimidine tract-bi 94.7 0.2 6.8E-06 45.3 10.3 32 190-227 47-78 (164)
171 2lcw_A RNA-binding protein FUS 93.6 0.0061 2.1E-07 51.9 0.0 27 187-217 5-31 (116)
172 3pgw_A U1-A; protein-RNA compl 94.4 0.26 9E-06 48.5 11.7 35 187-227 7-45 (282)
173 2diu_A KIAA0430 protein; struc 94.3 0.057 2E-06 43.9 5.2 41 314-354 47-89 (96)
174 2cq2_A Hypothetical protein LO 94.2 0.21 7.3E-06 42.2 8.8 35 187-227 23-59 (114)
175 2g4b_A Splicing factor U2AF 65 94.1 0.51 1.7E-05 42.3 12.0 57 313-370 51-115 (172)
176 3tyt_A Heterogeneous nuclear r 93.9 0.16 5.6E-06 47.8 8.4 35 187-227 121-157 (205)
177 1qm9_A Polypyrimidine tract-bi 93.8 0.25 8.4E-06 45.8 9.4 35 187-227 118-153 (198)
178 3sde_A Paraspeckle component 1 93.7 0.17 5.9E-06 49.4 8.5 36 188-229 95-130 (261)
179 3u1l_A PRE-mRNA-splicing facto 93.6 0.17 5.7E-06 48.9 8.0 40 187-228 132-176 (240)
180 2adc_A Polypyrimidine tract-bi 93.2 0.39 1.3E-05 45.8 9.9 36 187-228 149-185 (229)
181 2yh0_A Splicing factor U2AF 65 93.0 0.61 2.1E-05 42.9 10.8 26 188-217 3-28 (198)
182 3pgw_A U1-A; protein-RNA compl 93.0 0.34 1.2E-05 47.6 9.5 36 187-228 205-240 (282)
183 2e5i_A Heterogeneous nuclear r 93.0 0.61 2.1E-05 40.0 9.8 38 314-351 62-104 (124)
184 1jmt_A Splicing factor U2AF 35 93.0 0.27 9.1E-06 40.8 7.3 57 291-347 34-104 (104)
185 1sjq_A Polypyrimidine tract-bi 92.9 0.15 5E-06 42.5 5.6 39 186-230 13-51 (105)
186 2dit_A HIV TAT specific factor 92.6 0.39 1.3E-05 40.1 8.0 65 292-356 35-109 (112)
187 2ghp_A U4/U6 snRNA-associated 92.6 0.39 1.3E-05 47.5 9.3 36 187-228 115-151 (292)
188 2ytc_A PRE-mRNA-splicing facto 92.1 0.22 7.5E-06 39.1 5.5 38 186-229 9-46 (85)
189 2ad9_A Polypyrimidine tract-bi 91.4 0.23 7.8E-06 42.4 5.1 39 186-230 28-66 (119)
190 2xs2_A Deleted in azoospermia- 91.2 0.22 7.4E-06 40.8 4.7 39 186-230 6-44 (102)
191 3zzy_A Polypyrimidine tract-bi 91.2 0.84 2.9E-05 39.4 8.5 35 315-349 68-106 (130)
192 2cq1_A PTB-like protein L; RRM 90.9 0.25 8.7E-06 40.7 4.7 38 186-229 12-49 (101)
193 3s6e_A RNA-binding protein 39; 90.2 0.38 1.3E-05 40.6 5.3 56 292-347 26-91 (114)
194 1x4d_A Matrin 3; structural ge 89.5 0.27 9.4E-06 40.6 3.8 37 187-229 13-50 (102)
195 3v4m_A Splicing factor U2AF 65 89.3 0.75 2.6E-05 38.1 6.4 36 312-347 58-95 (105)
196 2d9o_A DNAJ (HSP40) homolog, s 88.4 0.7 2.4E-05 37.9 5.5 37 311-347 52-88 (100)
197 2hzc_A Splicing factor U2AF 65 84.6 1.6 5.6E-05 34.0 5.7 40 187-230 4-52 (87)
198 1x5p_A Negative elongation fac 83.9 1.3 4.3E-05 35.7 4.9 37 312-348 48-86 (97)
199 1fjc_A Nucleolin RBD2, protein 82.9 1.1 3.9E-05 35.8 4.2 37 312-348 52-90 (96)
200 2bz2_A Negative elongation fac 78.8 2.8 9.5E-05 35.4 5.4 37 312-348 72-110 (121)
201 2dhx_A Poly (ADP-ribose) polym 78.5 2.3 7.8E-05 34.8 4.4 38 187-228 6-46 (104)
202 2j8a_A Histone-lysine N-methyl 78.5 2.5 8.4E-05 36.4 4.8 36 190-231 3-42 (136)
203 2ytc_A PRE-mRNA-splicing facto 76.6 2.1 7.3E-05 33.2 3.7 22 312-333 47-68 (85)
204 2cq1_A PTB-like protein L; RRM 73.6 2.9 9.8E-05 34.2 3.9 35 313-347 51-89 (101)
205 2diu_A KIAA0430 protein; struc 72.9 2.2 7.5E-05 34.5 2.8 38 187-225 6-44 (96)
206 1x4d_A Matrin 3; structural ge 72.4 3.2 0.00011 34.0 3.9 36 313-348 52-91 (102)
207 3ue2_A Poly(U)-binding-splicin 72.4 2.3 7.9E-05 35.9 3.1 37 312-348 70-108 (118)
208 1fje_B Nucleolin RBD12, protei 71.3 6.1 0.00021 35.1 6.0 59 311-370 52-120 (175)
209 1sjq_A Polypyrimidine tract-bi 69.7 4.1 0.00014 33.6 4.0 35 313-347 52-90 (105)
210 2ad9_A Polypyrimidine tract-bi 69.1 4.3 0.00015 34.3 4.1 35 313-347 67-105 (119)
211 1fjc_A Nucleolin RBD2, protein 68.0 3.2 0.00011 33.0 3.0 28 186-217 13-40 (96)
212 3ue2_A Poly(U)-binding-splicin 67.8 3.5 0.00012 34.8 3.2 43 187-232 18-62 (118)
213 2hzc_A Splicing factor U2AF 65 63.3 4.6 0.00016 31.3 2.9 23 312-335 52-74 (87)
214 1l8d_A DNA double-strand break 55.5 45 0.0015 27.3 8.0 31 275-305 49-85 (112)
215 3v4m_A Splicing factor U2AF 65 54.9 9.6 0.00033 31.1 3.6 44 187-232 3-52 (105)
216 2dnr_A Synaptojanin-1; RRM dom 54.8 9.2 0.00031 30.5 3.2 32 314-346 50-83 (91)
217 1x5p_A Negative elongation fac 46.0 26 0.00088 27.6 4.8 34 187-228 13-46 (97)
218 1owx_A Lupus LA protein, SS-B, 44.1 17 0.00059 30.7 3.5 42 186-232 15-56 (121)
219 3dxb_A Thioredoxin N-terminall 43.0 19 0.00064 33.5 4.1 37 312-348 174-212 (222)
220 2kn4_A Immunoglobulin G-bindin 42.3 39 0.0013 29.2 5.9 61 311-371 11-92 (158)
221 2xs2_A Deleted in azoospermia- 40.5 5.9 0.0002 31.8 0.0 20 312-331 49-68 (102)
222 3tht_A Alkylated DNA repair pr 36.9 21 0.00073 36.0 3.5 23 314-336 57-79 (345)
223 2dit_A HIV TAT specific factor 36.3 18 0.00061 29.6 2.4 39 187-227 13-58 (112)
224 1wey_A Calcipressin 1; structu 34.0 53 0.0018 26.8 4.7 45 189-233 5-57 (104)
225 1ufw_A Synaptojanin 2; RNP dom 33.5 23 0.00079 28.4 2.5 21 314-335 59-79 (95)
226 2rdd_B UPF0092 membrane protei 33.0 23 0.00078 23.0 2.0 17 576-592 4-20 (37)
227 3he5_A Synzip1; heterodimeric 32.9 1E+02 0.0035 20.1 5.1 20 282-301 29-48 (49)
228 2dhx_A Poly (ADP-ribose) polym 30.9 54 0.0019 26.7 4.3 33 314-346 48-81 (104)
229 2dnr_A Synaptojanin-1; RRM dom 29.5 55 0.0019 26.0 4.0 44 186-231 4-51 (91)
230 2l9w_A U4/U6 snRNA-associated- 29.1 1.4E+02 0.0047 24.7 6.3 50 180-233 12-64 (117)
231 2bz2_A Negative elongation fac 28.7 52 0.0018 27.3 4.1 34 187-228 37-70 (121)
232 3twe_A Alpha4H; unknown functi 27.8 78 0.0027 18.1 3.2 19 289-307 6-24 (27)
233 1go4_E MAD1 (mitotic arrest de 26.3 2.5E+02 0.0085 22.6 7.4 70 233-307 20-91 (100)
234 2lf0_A Uncharacterized protein 23.5 1.5E+02 0.0052 24.5 5.6 23 284-306 36-58 (123)
235 3nmd_A CGMP dependent protein 22.4 2.5E+02 0.0086 21.1 6.4 23 286-308 42-64 (72)
236 1ufw_A Synaptojanin 2; RNP dom 21.7 65 0.0022 25.8 3.1 45 185-231 11-60 (95)
237 2d9o_A DNAJ (HSP40) homolog, s 20.7 1.9E+02 0.0066 22.9 5.9 41 187-229 8-51 (100)
238 1whv_A Poly(A)-specific ribonu 20.5 1E+02 0.0035 24.8 4.0 22 313-334 49-70 (100)
239 1z0k_B FYVE-finger-containing 20.3 2.2E+02 0.0075 21.2 5.5 44 235-304 23-66 (69)
No 1
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.59 E-value=0.00019 Score=58.75 Aligned_cols=36 Identities=11% Similarity=0.153 Sum_probs=28.5
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+.+|+|+|||.+.+ +++|+++|+++. ..|.+|.+++
T Consensus 1 S~~i~v~nLp~~~t----e~~l~~~F~~~G-~~v~~v~i~~ 36 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT----EDDIRGQLQSHG-VQAREVRLMR 36 (91)
T ss_dssp CCEEEEETCCSSCC----HHHHHHHHHHHT-CCCSBCCSSS
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHhC-CEeEEEEEEe
Confidence 46899999999987 899999999983 2576665543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.58 E-value=0.00023 Score=59.19 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=60.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
.+..+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 17 ~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 56 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRDKV---------------------------------- 56 (99)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECSS----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeecCC----------------------------------
Confidence 4567899999999986 79999999987 6898888765310
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
...+.|.|||+|++.++|..|.+.++.. ....++|+
T Consensus 57 ------------------------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 57 ------------------------------------------AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp ------------------------------------------SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0123579999999999999999877543 23456777
Q ss_pred cC
Q 007153 345 DA 346 (615)
Q Consensus 345 ~A 346 (615)
.|
T Consensus 95 ~A 96 (99)
T 4fxv_A 95 YA 96 (99)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 3
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00053 Score=56.18 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=62.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD---------------------------------- 42 (95)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC----------------------------------
Confidence 5678999999999886 79999999987 6788877653210
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
..+..+.|||+|++.++|..|.+.++.. +...++|+
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 43 ------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp ------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 1134689999999999999999976654 34557777
Q ss_pred cCCCCC
Q 007153 345 DAPESR 350 (615)
Q Consensus 345 ~AP~P~ 350 (615)
.|.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 775544
No 4
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.44 E-value=0.001 Score=55.28 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVK 46 (102)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35689999999999886 79999999998 6788887754
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.42 E-value=0.00047 Score=58.55 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=62.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 4 ~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~---------------------------------- 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPR---------------------------------- 43 (110)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCC----------------------------------
Confidence 5678999999999886 89999999987 7899998876421
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
..++.|.|||+|++.++|+.|.+.++.. ....++|+
T Consensus 44 ------------------------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 44 ------------------------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 0124589999999999999999987654 34456777
Q ss_pred cCC
Q 007153 345 DAP 347 (615)
Q Consensus 345 ~AP 347 (615)
.|+
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 775
No 6
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.40 E-value=0.00069 Score=57.26 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=64.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 23 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSE--------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCC---------------------------------
Confidence 35679999999999876 79999999987 6788887764310
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (615)
...+.|.|||+|++.++|..|.+.+... +...++|
T Consensus 64 -------------------------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 64 -------------------------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp -------------------------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 0123589999999999999999877654 3456788
Q ss_pred ecCCCCCC
Q 007153 344 SDAPESRE 351 (615)
Q Consensus 344 ~~AP~P~D 351 (615)
+.|-+.+|
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 88876655
No 7
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.40 E-value=0.00045 Score=55.67 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=59.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+..|...
T Consensus 2 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~~~~--------------------------------- 42 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMPVERMH--------------------------------- 42 (88)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETTE---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEeCCCC---------------------------------
Confidence 4578999999999986 79999999987 67877766532210
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
..+..|.|||+|++.++|..|.+.++.. +...+.++
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 43 ------------------------------------------PHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp ------------------------------------------EEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEE
Confidence 1124689999999999999999977654 23455666
Q ss_pred cCCCC
Q 007153 345 DAPES 349 (615)
Q Consensus 345 ~AP~P 349 (615)
.|-+|
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 65443
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.39 E-value=0.00036 Score=56.80 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=56.1
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCc
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~rP 269 (615)
+||.|.|||.+.+ +++|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 6899999999886 79999999988432788887765321
Q ss_pred ccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 007153 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (615)
Q Consensus 270 ~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (615)
..+..|.|||+|++.++|..|.+.+.... ...++|+.|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 01235899999999999999998876543 4456777665
Q ss_pred CCC
Q 007153 348 ESR 350 (615)
Q Consensus 348 ~P~ 350 (615)
+|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 9
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.0011 Score=54.80 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=61.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 45 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL---------------------------------- 45 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEecCC----------------------------------
Confidence 5678999999999886 78999999987 6787776643210
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
.....+.|||+|++.++|..|.+.++.. +...+.|+
T Consensus 46 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 46 ------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp ------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred ------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 1134689999999999999999876643 34456777
Q ss_pred cCCCCC
Q 007153 345 DAPESR 350 (615)
Q Consensus 345 ~AP~P~ 350 (615)
.|-++.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 664443
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.36 E-value=0.00059 Score=56.26 Aligned_cols=40 Identities=3% Similarity=0.060 Sum_probs=31.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.....||+|+|||.+.+ +++|+++|+++.+-.+.+|.+++
T Consensus 6 ~~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIRLIK 45 (95)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEECCC
T ss_pred CCccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEEEEe
Confidence 35678999999999987 79999999988544566776654
No 11
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.34 E-value=0.001 Score=54.52 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=58.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE-EEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v-~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++ .+.+|..
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~~i~~~~~--------------------------------- 43 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEID----EKLLYDTFSAF--GVILQTPKIMRDPD--------------------------------- 43 (96)
T ss_dssp SCCCEEEEECCCTTCC----HHHHHHHHHTT--SCBSSCCEECCCTT---------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEEcCC---------------------------------
Confidence 4578999999999976 79999999987 567766 5543210
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (615)
.....+.|||+|++.++|..|.+.++.. +...+.|
T Consensus 44 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (96)
T 1x5t_A 44 -------------------------------------------TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITV 80 (96)
T ss_dssp -------------------------------------------TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEE
T ss_pred -------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 1134689999999999999999976654 3345667
Q ss_pred ecCC
Q 007153 344 SDAP 347 (615)
Q Consensus 344 ~~AP 347 (615)
+.|-
T Consensus 81 ~~a~ 84 (96)
T 1x5t_A 81 SYAF 84 (96)
T ss_dssp EESC
T ss_pred EEec
Confidence 6663
No 12
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.34 E-value=0.002 Score=53.86 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=61.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 10 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVLKDRF--------------------------------- 50 (106)
T ss_dssp CTTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECCCCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEecCC---------------------------------
Confidence 35689999999999886 79999999998 6788877653210
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC-----CCCc
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ-----LVDT 340 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~-----~~~~ 340 (615)
..+..+.|||+|++.++|..|.+.++.. ....
T Consensus 51 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 51 -------------------------------------------TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp -------------------------------------------SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred -------------------------------------------CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 0134689999999999999999877654 3355
Q ss_pred eeeecCCCC
Q 007153 341 WTVSDAPES 349 (615)
Q Consensus 341 ~~v~~AP~P 349 (615)
+.|+.|-.+
T Consensus 88 l~v~~a~~~ 96 (106)
T 2dgp_A 88 IQVKPADSE 96 (106)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCcc
Confidence 677776433
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.33 E-value=0.0015 Score=54.65 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=61.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV--------------------------------- 52 (105)
T ss_dssp CCTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 35679999999999886 79999999987 6788776653210
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (615)
.....+.|||+|++.++|..|.+.++.. ....+.|
T Consensus 53 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 53 -------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp -------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred -------------------------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 1134579999999999999999987654 3345677
Q ss_pred ecCCCC
Q 007153 344 SDAPES 349 (615)
Q Consensus 344 ~~AP~P 349 (615)
+.|-.+
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 776443
No 14
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.33 E-value=0.0017 Score=53.60 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 7 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp CSSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999999886 79999999987 6788887754
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.32 E-value=0.00075 Score=53.93 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=31.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEEE
Confidence 5689999999999876 79999999987 6788777643
No 16
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.31 E-value=0.0011 Score=54.55 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=59.8
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~r 268 (615)
+++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|-.
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMMFDPQ------------------------------------ 39 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCBCTT------------------------------------
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEeCCC------------------------------------
Confidence 57999999999886 79999999987 6788776643210
Q ss_pred cccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 007153 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (615)
Q Consensus 269 P~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (615)
.....|.|||+|++.++|..|.+.+... +...+.|+.|
T Consensus 40 ----------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 40 ----------------------------------------TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp ----------------------------------------TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 0134589999999999999999877654 3455677777
Q ss_pred CCCC
Q 007153 347 PESR 350 (615)
Q Consensus 347 P~P~ 350 (615)
-+++
T Consensus 80 ~~~~ 83 (96)
T 2x1f_A 80 SNSD 83 (96)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 4443
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.30 E-value=0.00074 Score=54.27 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 5688999999999876 79999999987 67888877643
No 18
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.27 E-value=0.0014 Score=55.86 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+..++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5678999999999886 79999999987 6788887764
No 19
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.26 E-value=0.0012 Score=53.55 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=31.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~ 41 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIK 41 (92)
T ss_dssp SSSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 35689999999999886 79999999987 678777665
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.24 E-value=0.0012 Score=52.39 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=58.4
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~r 268 (615)
.+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 1 t~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~~~------------------------------------ 38 (83)
T 3md1_A 1 TFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWDMQ------------------------------------ 38 (83)
T ss_dssp CEEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEECTT------------------------------------
T ss_pred CeEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEcCC------------------------------------
Confidence 37999999999986 79999999887 6788887765320
Q ss_pred cccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 007153 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (615)
Q Consensus 269 P~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (615)
.....|.|||+|++.++|..|.+.++.. ....++++.|
T Consensus 39 ----------------------------------------~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 39 ----------------------------------------TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 78 (83)
T ss_dssp ----------------------------------------TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEec
Confidence 0123579999999999999999977644 2345667766
Q ss_pred C
Q 007153 347 P 347 (615)
Q Consensus 347 P 347 (615)
-
T Consensus 79 ~ 79 (83)
T 3md1_A 79 A 79 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 21
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.0012 Score=53.79 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 46789999999999886 78999999987 6688877653
No 22
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.23 E-value=0.0018 Score=58.54 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=71.6
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
+++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~~----------------------------------- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKI----------------------------------- 39 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC-----------------------------------
Confidence 468999999999986 89999999987 6788887754221
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 345 (615)
...+.|.|||+|.+.++|..|.+.++.. ....+.+..
T Consensus 40 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 40 -----------------------------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 1124589999999999999999876543 233455655
Q ss_pred CCCC------CCeeecCcCCchHHHHHHHH
Q 007153 346 APES------RELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 346 AP~P------~DIiW~NL~~~~~~r~~R~~ 369 (615)
|.++ ..+.-.||..+..+.-++..
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 108 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQL 108 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHH
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHH
Confidence 5433 34777888876666555553
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.22 E-value=0.0024 Score=54.65 Aligned_cols=37 Identities=5% Similarity=0.138 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 41 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLIK 41 (116)
T ss_dssp CSCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 4578999999999876 79999999987 6788887754
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.0016 Score=53.92 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=60.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+..|.
T Consensus 15 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~----------------------------------- 53 (100)
T 2do4_A 15 LEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVTNR----------------------------------- 53 (100)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEECC-----------------------------------
Confidence 5678999999999886 79999999987 678888775421
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
..+..+.|||+|++.++|..|.+.++.. +...+.|+
T Consensus 54 ------------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 54 ------------------------------------------AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp ------------------------------------------TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ------------------------------------------CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0123579999999999999999876543 34556777
Q ss_pred cCCCC
Q 007153 345 DAPES 349 (615)
Q Consensus 345 ~AP~P 349 (615)
.|-++
T Consensus 92 ~a~~~ 96 (100)
T 2do4_A 92 ISNSG 96 (100)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 76443
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0027 Score=53.11 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=61.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPKKMT--------------------------------- 52 (107)
T ss_dssp SSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCCCCS---------------------------------
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEecCCC---------------------------------
Confidence 35679999999999886 79999999987 6788877654310
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHh-ccC--CCCcee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSL-HAQ--LVDTWT 342 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~-~~~--~~~~~~ 342 (615)
......+.|||+|++.++|..|.+.+ +.. ....+.
T Consensus 53 ------------------------------------------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 53 ------------------------------------------GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp ------------------------------------------SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred ------------------------------------------CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 01235689999999999999999987 433 334567
Q ss_pred eecCCCC
Q 007153 343 VSDAPES 349 (615)
Q Consensus 343 v~~AP~P 349 (615)
|+.|-..
T Consensus 91 v~~a~~~ 97 (107)
T 2cph_A 91 LEWADSE 97 (107)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 7776443
No 26
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.0034 Score=52.16 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMIT 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 35679999999999886 79999999998 6788887764
No 27
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.0035 Score=52.11 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIF 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999999886 79999999987 6788877754
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.0016 Score=53.27 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CCGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 35689999999999876 78999999987 6788887764
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.17 E-value=0.0013 Score=56.18 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+..+|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 4 ~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 456899999999986 89999999998 6788888764
No 30
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.16 E-value=0.0025 Score=53.18 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=31.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5689999999999886 79999999987 5688877654
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.14 E-value=0.0026 Score=54.12 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVK 49 (115)
T ss_dssp STTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 35689999999999886 79999999988 6788887764
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=0.0028 Score=52.22 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcc-eEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~-~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ |.|. ++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~ 44 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIR 44 (99)
T ss_dssp CSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEE
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEee
Confidence 45689999999999976 89999999997 6777 887764
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.11 E-value=0.0017 Score=53.86 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=31.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 46 (102)
T ss_dssp CCCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECCC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEEEe
Confidence 35689999999999876 79999999987 6777776643
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.10 E-value=0.0018 Score=52.12 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=31.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 468999999999986 79999999987 67888877653
No 35
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.09 E-value=0.0019 Score=52.75 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=32.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 50 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICK 50 (95)
T ss_dssp TTGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 35789999999999886 79999999987 6788887764
No 36
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0033 Score=52.98 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999886 79999999987 6788877654
No 37
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.0028 Score=52.94 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=31.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 21 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 57 (106)
T 1p27_B 21 VEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 57 (106)
T ss_dssp TTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEe
Confidence 4578999999999886 79999999988 6788887764
No 38
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.07 E-value=0.0023 Score=53.20 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=31.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKK 49 (103)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999886 79999999987 6788887764
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.07 E-value=0.0023 Score=53.21 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 11 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 47 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIPR 47 (103)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCB
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 5579999999999986 79999999987 6787776643
No 40
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.05 E-value=0.0026 Score=57.63 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=71.4
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
+++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 40 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeCC-----------------------------------
Confidence 578999999999886 79999999987 6687777643210
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~ 345 (615)
.....|.|||+|.+.++|..|.+.++.. ....+.++.
T Consensus 41 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 41 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 0124589999999999999999876543 233445554
Q ss_pred CC------CCCCeeecCcCCchHHHHHHHH
Q 007153 346 AP------ESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 346 AP------~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
|. ++.-|.-.||.....+.-++..
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 109 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTI 109 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHH
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHh
Confidence 42 3455788888877666655554
No 41
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0017 Score=54.13 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=61.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 6 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~~~---------------------------------- 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRE---------------------------------- 45 (104)
T ss_dssp HHHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETT----------------------------------
T ss_pred CCccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEeCCC----------------------------------
Confidence 3568999999999886 79999999987 6788887764320
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
.....|.|||+|++..+|..|.+.++.. ....++|+
T Consensus 46 ------------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 46 ------------------------------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp ------------------------------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 0123579999999999999999877654 34456777
Q ss_pred cCCCC
Q 007153 345 DAPES 349 (615)
Q Consensus 345 ~AP~P 349 (615)
.|-.+
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 76544
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.0039 Score=51.87 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|++.+ |.|.++.+.+
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~ 44 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVL 44 (104)
T ss_dssp SSCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEE
Confidence 35679999999999886 799999999833 6788887764
No 43
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.0024 Score=53.06 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMM 49 (103)
T ss_dssp CSSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 35689999999999986 79999999987 5788877754
No 44
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.0032 Score=52.48 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ | |.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp SSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 45679999999999986 79999999987 5 88877654
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=97.01 E-value=0.0032 Score=53.04 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 23 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 60 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNL 60 (110)
T ss_dssp BTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 45678999999999886 79999999988 6787776643
No 46
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.00 E-value=0.0035 Score=53.42 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=31.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVIT 51 (116)
T ss_dssp SCSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEEE
Confidence 35679999999999886 79999999987 6788877653
No 47
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=97.00 E-value=0.0018 Score=52.03 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=33.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 8 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CSCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeec
Confidence 36789999999999886 89999999887 67888887654
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0023 Score=53.28 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 35689999999999876 79999999987 6788887764
No 49
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.99 E-value=0.0023 Score=52.68 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=32.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 40 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKK 40 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4578999999999976 79999999987 67888887654
No 50
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0059 Score=49.32 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=30.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~ 41 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDV 41 (90)
T ss_dssp SCCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEE
Confidence 46789999999999876 79999999998 56777655
No 51
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.97 E-value=0.0012 Score=54.30 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=30.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (615)
+.+.|||+|++.++|..|.+.++.. ....++|+.|-.|.
T Consensus 56 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 56 PTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 4589999999999999999877644 34557788776654
No 52
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.96 E-value=0.0056 Score=52.82 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 33 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 4578999999999886 79999999987 6788887653
No 53
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.96 E-value=0.0043 Score=51.14 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~ 224 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 46789999999999886 79999999987 56665
No 54
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.94 E-value=0.0029 Score=55.11 Aligned_cols=44 Identities=9% Similarity=0.181 Sum_probs=34.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCeeec
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWN 355 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~ 355 (615)
..|.|||+|++.++|..|.+.+.... ...++|..|-.++|...+
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 35789999999999999998876543 446788888877776654
No 55
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.007 Score=50.80 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=29.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 4678999999999886 79999999997 56777655
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.93 E-value=0.0033 Score=52.60 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=32.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 26 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 63 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHY 63 (107)
T ss_dssp CCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 45689999999999886 79999999987 6788887764
No 57
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.92 E-value=0.0037 Score=52.71 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 26 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~ 63 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIF 63 (109)
T ss_dssp TTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEECC
T ss_pred CCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 45679999999999886 79999999987 6788777643
No 58
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=96.92 E-value=0.0036 Score=56.48 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=60.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+++ +++|+++|+++ |.|.+|.+.+|..
T Consensus 37 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 76 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLDKM---------------------------------- 76 (156)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC----------------------------------
Confidence 4679999999999876 79999999988 6788888765321
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
.....+.|||+|++.++|..|.+.++.. ....+.|+
T Consensus 77 ------------------------------------------~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 77 ------------------------------------------KKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 0123579999999999999999976644 33456676
Q ss_pred cCCC
Q 007153 345 DAPE 348 (615)
Q Consensus 345 ~AP~ 348 (615)
.|.+
T Consensus 115 ~a~~ 118 (156)
T 1h2v_Z 115 WDAG 118 (156)
T ss_dssp EESC
T ss_pred ECCC
Confidence 6643
No 59
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.91 E-value=0.0047 Score=52.44 Aligned_cols=95 Identities=17% Similarity=0.165 Sum_probs=67.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~~----------------------------------- 44 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNTP----------------------------------- 44 (115)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECST-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeCC-----------------------------------
Confidence 4678999999999886 78999999987 678887765310
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
...|.|||+|.+..+|..|.+.++.. ....+.++
T Consensus 45 --------------------------------------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 45 --------------------------------------------ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp --------------------------------------------TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred --------------------------------------------CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 12478999999999999999977654 34456777
Q ss_pred cCCCCCCeeecCcCCchHHHHHHH
Q 007153 345 DAPESRELIWNNLNIKFFQRQIRQ 368 (615)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~ 368 (615)
.|-++.+- +|+.....+.-++.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EecCChhh--hhhhHhHhHHHHHH
Confidence 76543322 45554444443333
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.91 E-value=0.004 Score=54.80 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 61 ~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~ 97 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 97 (140)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCC
T ss_pred CCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEee
Confidence 4678999999999876 79999999987 6787776643
No 61
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.89 E-value=0.0047 Score=53.42 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 19 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35678999999999876 79999999987 6788777654
No 62
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.89 E-value=0.0018 Score=52.38 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.9
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEECC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 6899999999886 78999999998 6788887654
No 63
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.89 E-value=0.003 Score=52.83 Aligned_cols=37 Identities=5% Similarity=0.190 Sum_probs=32.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp SGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEEE
Confidence 5689999999999986 79999999987 6788888764
No 64
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.88 E-value=0.0072 Score=49.01 Aligned_cols=36 Identities=6% Similarity=0.103 Sum_probs=29.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~~ 42 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECDI 42 (92)
T ss_dssp CCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 46689999999999886 79999999987 56777654
No 65
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.88 E-value=0.0083 Score=49.15 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=30.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHH----HHHHHhCCCCcceEEEe
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~----~~f~~~~p~~V~~v~i~ 228 (615)
....++|.|.|||.+.+ +++|+ ++|+++ |.|.++.+.
T Consensus 6 ~~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~ 46 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELS 46 (96)
T ss_dssp CSSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEE
Confidence 45678999999999887 67888 999888 678887764
No 66
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0023 Score=49.89 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=28.0
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.||.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 1 ~~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 34 (77)
T 1uaw_A 1 CKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 34 (77)
T ss_dssp CCEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEEC
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEec
Confidence 4799999999987 68899999987 6677777654
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.86 E-value=0.0034 Score=48.74 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.0
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
+|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~ 32 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAMLM 32 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECCC
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 478999999886 79999999987 567776543
No 68
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.85 E-value=0.0086 Score=48.29 Aligned_cols=36 Identities=11% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 40 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECDI 40 (90)
T ss_dssp SSCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEEE
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEE
Confidence 35689999999999886 78999999987 56766654
No 69
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.84 E-value=0.0018 Score=53.75 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=57.9
Q ss_pred ccceEEEecCCC------CCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 007153 188 QQFAVLVRDLPD------LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSA 261 (615)
Q Consensus 188 ~~~TVlV~~iP~------~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~ 261 (615)
.++||.|.|||. +.. +++|+++|+++ |.|.++.+.+|..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~----~~~L~~~F~~~--G~i~~v~i~~d~~----------------------------- 49 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVL----KKALTSLFSKA--GKVVNMEFPIDEA----------------------------- 49 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHH----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------
T ss_pred cCcEEEEeCCCcCChHHHHHH----HHHHHHHHHhc--CCEeEEEEEEcCC-----------------------------
Confidence 478999999998 554 78999999987 6788887765321
Q ss_pred CCCCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--C-
Q 007153 262 GKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--V- 338 (615)
Q Consensus 262 ~~~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~- 338 (615)
..++.|.|||+|++..+|..|.+.++... .
T Consensus 50 -----------------------------------------------tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 50 -----------------------------------------------TGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp -----------------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred -----------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 01245899999999999999998876542 3
Q ss_pred CceeeecC
Q 007153 339 DTWTVSDA 346 (615)
Q Consensus 339 ~~~~v~~A 346 (615)
..+.|..|
T Consensus 83 r~l~V~~a 90 (100)
T 3ns6_A 83 HRLFLYTM 90 (100)
T ss_dssp CBCEEEES
T ss_pred eEEEEEEC
Confidence 45667665
No 70
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.84 E-value=0.0029 Score=54.08 Aligned_cols=38 Identities=16% Similarity=0.259 Sum_probs=31.2
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 37 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 74 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVFI 74 (118)
T ss_dssp CCCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 35679999999999986 79999999987 6788877653
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.84 E-value=0.0047 Score=53.87 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=59.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+.+|-.
T Consensus 44 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 83 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVYDQQ---------------------------------- 83 (129)
T ss_dssp CCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC----------------------------------
Confidence 5678999999999986 78999999987 6788887764310
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~ 344 (615)
..+..|.|||+|++.++|..|.+.+.... ...+.|+
T Consensus 84 ------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 84 ------------------------------------------SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp ------------------------------------------SSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 11346899999999999999999776542 3456666
Q ss_pred cC
Q 007153 345 DA 346 (615)
Q Consensus 345 ~A 346 (615)
.|
T Consensus 122 ~a 123 (129)
T 2kxn_B 122 FS 123 (129)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 72
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.83 E-value=0.0024 Score=49.57 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=26.4
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~ 32 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIELP 32 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECCC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 689999999986 79999999998 567776553
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.82 E-value=0.0062 Score=51.51 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (615)
+..+.|||+|++.++|..|.+.++.. ....++|+.|
T Consensus 63 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 63 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 35689999999999999999876644 2344566665
No 74
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0026 Score=55.04 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=31.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC--CCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p--~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++.+ |.|.+|.+++
T Consensus 21 ~~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~ 61 (123)
T 2dha_A 21 ENQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVT 61 (123)
T ss_dssp CSCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEE
Confidence 4578999999999986 8999999999854 4467787765
No 75
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0047 Score=49.97 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+.+ +++|+++|+++ .|.++.+.+
T Consensus 7 ~~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~ 43 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVR 43 (91)
T ss_dssp CCCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEE
T ss_pred CCCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEE
Confidence 35679999999999886 79999999876 477777764
No 76
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.80 E-value=0.0058 Score=51.31 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=29.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~i 47 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 47 (108)
T ss_dssp SCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEE
Confidence 4579999999999886 89999999987 56776654
No 77
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.79 E-value=0.0051 Score=51.07 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....++|.|.|||.+++ +++|+++|+++ | |.++.+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~ 48 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVR 48 (103)
T ss_dssp SSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEE
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEee
Confidence 45679999999999986 79999999987 4 88887765
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.77 E-value=0.002 Score=52.59 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=25.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~ 226 (615)
+..++|.|.|||.+.+ +++|+++|+++ |.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~ 46 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS----IDEILDFFYGY--QVIPGSV 46 (95)
T ss_dssp --CEEEEEECCCTTCC----HHHHHHHTTTS--CBCTTCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCccceE
Confidence 5679999999999886 79999999876 4454443
No 79
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.011 Score=48.64 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=29.9
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v 225 (615)
....++|.|.|||.+.+ +++|+++|+++.+|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~ 47 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERV 47 (99)
T ss_dssp SSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEE
T ss_pred cCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEE
Confidence 35679999999999876 7999999999876666554
No 80
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.012 Score=47.98 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=28.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v 225 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~ 45 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESC 45 (96)
T ss_dssp CSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEE
T ss_pred CCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4578999999999886 79999999988 567776
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.76 E-value=0.0065 Score=51.41 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~ 49 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADILE 49 (114)
T ss_dssp CCCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 35678999999999886 79999999987 6788877654
No 82
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.0092 Score=50.09 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
+..+||.|.|||.+++ +++|+++|+++ |.|.++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 58 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVF 58 (109)
T ss_dssp SSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 5689999999999886 79999999988 577777664
No 83
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.0082 Score=49.40 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=58.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~~~------------------------------------ 49 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDIT----EEEMRKLFEKY--GKAGEVFIHK------------------------------------ 49 (99)
T ss_dssp CCCTTEEEEESCCTTCC----HHHHHHHTSTT--CCCSEEEEET------------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhhc--CCeEEEEEec------------------------------------
Confidence 35678999999999886 78999999887 5676665421
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTV 343 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v 343 (615)
..+.|||+|++.++|..|.+.++.. +...++|
T Consensus 50 ----------------------------------------------~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 50 ----------------------------------------------DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp ----------------------------------------------TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred ----------------------------------------------CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 0268999999999999999887654 3456777
Q ss_pred ecCCCCC
Q 007153 344 SDAPESR 350 (615)
Q Consensus 344 ~~AP~P~ 350 (615)
+.|-++.
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpj_A 84 RFACHSA 90 (99)
T ss_dssp EESSCCS
T ss_pred EEcCCCC
Confidence 7775443
No 84
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.008 Score=54.08 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=28.8
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
|||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~ 33 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIM 33 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEE
Confidence 6899999999886 79999999988 678888776
No 85
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=96.74 E-value=0.0087 Score=49.57 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=31.7
Q ss_pred CCCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 185 VRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 185 ~~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
..+.+++|.|+|+|.+.+ +++|++.|+++ |+|.++.+.
T Consensus 17 ~~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 346789999999999886 89999999987 678887653
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.74 E-value=0.0035 Score=49.96 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=30.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~ 39 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAIL 39 (85)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999887 78999999987 6788887654
No 87
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.72 E-value=0.0097 Score=49.84 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=29.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
...+||.|.|||.+.+ +++|+++|+++.+ .|.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~G~-~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK----REEILEEIAKVTE-GVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCCTTSC----HHHHHHHHHHHST-TEEEEECC
T ss_pred cCCCEEEEeCCCCcCC----HHHHHHHHHHhcC-CceEEEEE
Confidence 5679999999999886 7999999999842 27776554
No 88
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.71 E-value=0.0057 Score=51.54 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=29.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 59 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 59 (109)
T ss_dssp ---CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEE
Confidence 4678999999999886 79999999987 6788887754
No 89
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.71 E-value=0.0074 Score=51.13 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=28.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~ 226 (615)
+..++|.|.|||.+.+ +++|+++|+++.+ .|..+.
T Consensus 26 ~~~~~l~VgnLp~~~t----e~dL~~~F~~~G~-~v~~v~ 60 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCS----WQDLKDLARENSL-ETTFSS 60 (111)
T ss_dssp CCCEEEEEECSSCCCC----HHHHHHHHHHHTC-CCSEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHhCC-eeEEEE
Confidence 5678999999999886 7999999999831 565544
No 90
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.70 E-value=0.0073 Score=54.94 Aligned_cols=102 Identities=21% Similarity=0.305 Sum_probs=72.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
.++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~---------------------------------- 41 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRSQ---------------------------------- 41 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECSS----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCCC----------------------------------
Confidence 468999999999986 79999999987 67888887653210
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC-----CCcee
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 342 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~-----~~~~~ 342 (615)
| ..+..|.|||+|.+.++|..|.+.++... ...+.
T Consensus 42 ------------~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 42 ------------N----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp ------------S----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ------------C----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 0 01346899999999999999998765432 22333
Q ss_pred eecC-------CCCCCeeecCcCCchHHHHHHHH
Q 007153 343 VSDA-------PESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 343 v~~A-------P~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
+..+ ++..-|.=.||..+..+.-++..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 115 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVM 115 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHH
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHH
Confidence 3332 23455777888877666666664
No 91
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.69 E-value=0.0071 Score=50.90 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=28.0
Q ss_pred CccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~-~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...++|.|.|||.+ .+ +++|+++|+++ |.|.++.+
T Consensus 25 ~~~~~l~V~nl~~~~~t----~~~l~~~F~~~--G~v~~v~i 60 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVK----KSDVETIFSKY--GRVAGCSV 60 (110)
T ss_dssp TCSSEEEECSCCCSSCC----HHHHHHHHGGG--SCCSEEEE
T ss_pred CCCcEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEE
Confidence 34589999999998 65 89999999987 56666544
No 92
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.69 E-value=0.0063 Score=53.58 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 40 ~~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4568999999999886 79999999998 6788887764
No 93
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.68 E-value=0.011 Score=48.94 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=28.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~ 226 (615)
...++|.|.|||.+++ +++|+++|+++ |.|.++.
T Consensus 9 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 4578999999999876 79999999988 5676654
No 94
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.68 E-value=0.0069 Score=55.96 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=63.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
....||.|.|||.++. +++|+++|+++ |.|.++.+.+|.
T Consensus 86 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~----------------------------------- 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDR----------------------------------- 124 (177)
T ss_dssp TTCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 4578999999999886 79999999987 678887775421
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
.....+.|||+|++.++|..|.+.+... +...+.|+
T Consensus 125 ------------------------------------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 125 ------------------------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp ------------------------------------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred ------------------------------------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 0134689999999999999999976654 33456777
Q ss_pred cCCCCCCeee
Q 007153 345 DAPESRELIW 354 (615)
Q Consensus 345 ~AP~P~DIiW 354 (615)
.|..+....|
T Consensus 163 ~a~~~~~~~~ 172 (177)
T 2f3j_A 163 LVASQIDLEH 172 (177)
T ss_dssp EESSGGGGCC
T ss_pred EecCCCCCCC
Confidence 7755444333
No 95
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.67 E-value=0.0082 Score=57.10 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=70.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+++|..
T Consensus 13 ~p~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 52 (213)
T 4f02_A 13 YPMASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI---------------------------------- 52 (213)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC----------------------------------
Confidence 3468999999999987 89999999998 6899988865321
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~ 344 (615)
..+..|.|||+|++..+|..|.+.++... ...+++.
T Consensus 53 ------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 53 ------------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 01245899999999999999998765432 2233444
Q ss_pred cCCC--------CCCeeecCcCCchHHHHHHHH
Q 007153 345 DAPE--------SRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 345 ~AP~--------P~DIiW~NL~~~~~~r~~R~~ 369 (615)
.+.. ..-|.=.||..+..+.-++.+
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 123 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 123 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHH
T ss_pred cccccccccccccccceECCcccccHHHHHHHH
Confidence 4322 234677788776666665554
No 96
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0042 Score=52.82 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|. +.+
T Consensus 6 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~-~~~ 39 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID----EDEITASFRRF--GPLV-VDW 39 (114)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC-EEC
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE-EEE
Confidence 4578999999999886 79999999987 5565 443
No 97
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.63 E-value=0.0031 Score=52.25 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=28.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ | |.++.+.+
T Consensus 16 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 52 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 52 (100)
T ss_dssp ----CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSC
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEe
Confidence 35689999999999987 68899999887 6 88887654
No 98
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.62 E-value=0.0057 Score=50.05 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=30.6
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCCCe
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESREL 352 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DI 352 (615)
.|.|||+|++..+|..|.+.++.. ....++++.|-++.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 378999999999999999877654 3456778877666553
No 99
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.62 E-value=0.0033 Score=50.56 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=28.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i 37 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFI 37 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEE
Confidence 4579999999999986 79999999887 56777654
No 100
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.61 E-value=0.0045 Score=51.61 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=32.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 35679999999999986 79999999987 67888877653
No 101
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.015 Score=48.48 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~ 48 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMM 48 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEE
Confidence 35679999999999886 79999999987 678777653
No 102
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=96.59 E-value=0.0047 Score=50.01 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
.++.+|+.|.|+|.+.+ +++|+++|+++ |.|.++.+.
T Consensus 8 ~~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~ 44 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIP 44 (89)
T ss_dssp ---CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEe
Confidence 46789999999999987 79999999987 678777654
No 103
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.56 E-value=0.011 Score=50.07 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 59 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILR 59 (114)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 5678999999999886 78999999987 6788877754
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.56 E-value=0.012 Score=53.05 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 68 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~~ 104 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 104 (158)
T ss_dssp CBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 4578999999999986 79999999988 6788877653
No 105
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.56 E-value=0.015 Score=54.90 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=69.7
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
..+||.|.|||.+++ +++|+++|+++ |.|.++.+.+|..
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 65 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSWDSV----------------------------------- 65 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECCC-C-----------------------------------
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEeecCC-----------------------------------
Confidence 468999999999986 89999999988 6788887754210
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (615)
.....|.|||+|.+.++|..|.+.++... ...+.+..
T Consensus 66 -----------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 66 -----------------------------------------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp -----------------------------------------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred -----------------------------------------CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 11356899999999999999999765432 23344544
Q ss_pred CC-----------------CCCCeeecCcCCchHHHHHHHH
Q 007153 346 AP-----------------ESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 346 AP-----------------~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
+. ...-|.-.||.....+.-++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 145 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV 145 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHH
Confidence 32 2245677777766555555543
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.55 E-value=0.0075 Score=53.02 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 81 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 81 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 4568999999999875 89999999987 5788876643
No 107
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.55 E-value=0.0086 Score=50.87 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 26 QFRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 358999999999886 79999999887 67888877653
No 108
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.017 Score=47.25 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=29.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
.+..++|.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~~ 49 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTIDH 49 (97)
T ss_dssp CCCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEE
Confidence 35678999999999876 79999999987 56766643
No 109
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0072 Score=51.10 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
.+++||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 8 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i 42 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVLL 42 (111)
T ss_dssp EEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 3578999999999886 79999999987 66766654
No 110
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.52 E-value=0.0077 Score=51.83 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=31.0
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 70 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILC 70 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 468999999999886 79999999987 6788888765
No 111
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.49 E-value=0.024 Score=46.38 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=29.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (615)
..+.|||+|++..+|..|.+.++.. ....+.|+.|-++
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3578999999999999999887654 3456777777444
No 112
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.45 E-value=0.018 Score=47.47 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=27.7
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 191 TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
||.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 2 ~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 34 (101)
T 2hvz_A 2 KVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIAR 34 (101)
T ss_dssp EEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEES
T ss_pred EEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 799999999876 79999999998 5787777654
No 113
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.43 E-value=0.011 Score=53.37 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=59.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...++|.|.|||.+.+ +++|+++|+++.+..|.++.+++|-.
T Consensus 53 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d~~---------------------------------- 94 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAENRA---------------------------------- 94 (156)
T ss_dssp ---CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEecCC----------------------------------
Confidence 3568999999999986 79999999988433788888775421
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
..+..|.|||+|++..+|..|.+.+... ....+.|+
T Consensus 95 ------------------------------------------tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 95 ------------------------------------------NGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ------------------------------------------TCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 0124589999999999999999987654 23456676
Q ss_pred cC
Q 007153 345 DA 346 (615)
Q Consensus 345 ~A 346 (615)
.|
T Consensus 133 ~a 134 (156)
T 3n9u_C 133 PA 134 (156)
T ss_dssp EC
T ss_pred Ec
Confidence 66
No 114
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.43 E-value=0.0083 Score=50.00 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce-EEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR-SMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~-v~i~ 228 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.+ +.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~~v~i~ 49 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPNGMTLP 49 (104)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcceeEEEE
Confidence 5679999999999886 79999999876 55654 5443
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.41 E-value=0.008 Score=47.43 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=27.1
Q ss_pred cceEEEecCCCCCCCCC--hHHHHHHHHHHhCCCCcceEEE
Q 007153 189 QFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~--~~~~l~~~f~~~~p~~V~~v~i 227 (615)
++||.|.|||.+..+.. .+++|+++|+++ |.|.++.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i 39 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY 39 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEe
Confidence 46899999998774210 268899999887 56777654
No 116
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.40 E-value=0.0056 Score=51.89 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=30.3
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 24 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (114)
T 2cq4_A 24 DARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIIS 59 (114)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEe
Confidence 358999999999886 79999999987 6788887754
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.39 E-value=0.0066 Score=53.48 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=30.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCC---cceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDT---FYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~---V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ |. |.++.+++
T Consensus 42 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS----VEDVQNFLSDC--TIHDGAAGVHFIY 81 (136)
T ss_dssp CTTCEEEEESCCTTCC----HHHHHHHTTTC--CCSSSSTTEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcCceeEEEEEE
Confidence 4578999999999987 79999999987 44 67777764
No 118
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.38 E-value=0.0092 Score=50.01 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=29.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC-CCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p-~~V~~v~i~ 228 (615)
...++|.|.|||.+.+ +++|+++|+++.+ |.|.++.+.
T Consensus 9 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i~ 47 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHFL 47 (107)
T ss_dssp SSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEECC
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEEE
Confidence 5679999999999987 6899999997632 236666654
No 119
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.37 E-value=0.01 Score=50.51 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=26.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...++|.|.|||.+++ +++|+++|+++ |.|.++.+
T Consensus 14 r~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 48 (115)
T 3beg_B 14 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 48 (115)
T ss_dssp ---CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 3578999999999886 68899999987 56766654
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.37 E-value=0.017 Score=48.44 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=28.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 29 ~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i 63 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQ----ESELNEIFGPF--GPMKEVKI 63 (108)
T ss_dssp CSCSEEEECSSCTTCC----HHHHHHHHTTT--SCCCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 5679999999999886 78999999887 56666544
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.34 E-value=0.018 Score=53.52 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 10 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 48 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRD 48 (196)
T ss_dssp CGGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEc
Confidence 35689999999999886 89999999988 67888877653
No 122
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.34 E-value=0.009 Score=50.71 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=30.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCc-ceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V-~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++ |.| .++.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~~ 50 (114)
T 2cpy_A 13 SAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVLV 50 (114)
T ss_dssp SCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEECC
T ss_pred CCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEEE
Confidence 5679999999999987 79999999987 666 6666643
No 123
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.33 E-value=0.0058 Score=55.29 Aligned_cols=100 Identities=8% Similarity=0.148 Sum_probs=67.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
.++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~----------------------------------- 40 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDPA----------------------------------- 40 (167)
T ss_dssp GGGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCTT-----------------------------------
T ss_pred CCcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECCC-----------------------------------
Confidence 368999999999986 79999999987 6788877653210
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCCCCceeeecCC
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 347 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 347 (615)
...+.|.|||+|.+.++|..|.+..+.-+...+.+..+.
T Consensus 41 -----------------------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 41 -----------------------------------------TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAI 79 (167)
T ss_dssp -----------------------------------------TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECC
T ss_pred -----------------------------------------CCCccceEEEEEccHHHHHHHHhcccccCCeEccccccc
Confidence 113568999999999999999885322222233344332
Q ss_pred ------CCCCeeecCcCCchHHHHHHHH
Q 007153 348 ------ESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 348 ------~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
.+..|.=.||..+..+.-++.+
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~ 107 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEF 107 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHH
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHH
Confidence 2234666777766666555554
No 124
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.32 E-value=0.0053 Score=51.87 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=60.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHH---HHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGK 263 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~---~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~ 263 (615)
....+|.|.|||.+.+ +++|+ ++|+++ |.|.++.+..|...
T Consensus 13 ~~~~~l~V~nLp~~~~----~~~l~~~~~~F~~~--G~i~~v~i~~~~~~------------------------------ 56 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLA----DPEVLKRPEYFGKF--GKIHKVVINNSTSY------------------------------ 56 (111)
T ss_dssp CCSSCEEEEEECTTTC----CHHHHHSTTTTTTT--SCEEEEEEECCSSC------------------------------
T ss_pred cCCCEEEEECCCCCCC----HHHHHHHHHHhhcc--CCEEEEEEecCCCc------------------------------
Confidence 5678999999999987 57788 999887 67888887643210
Q ss_pred CCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCce
Q 007153 264 PEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW 341 (615)
Q Consensus 264 ~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~ 341 (615)
|+ ...+.|.|||+|++.++|..|.+.++.. ....+
T Consensus 57 ----------------~~---------------------------~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 57 ----------------AG---------------------------SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp ----------------CS---------------------------SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ----------------Cc---------------------------cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 00 1135689999999999999999986643 34456
Q ss_pred eeecCC
Q 007153 342 TVSDAP 347 (615)
Q Consensus 342 ~v~~AP 347 (615)
+|+.|-
T Consensus 94 ~V~~a~ 99 (111)
T 2cpi_A 94 KASLGT 99 (111)
T ss_dssp EEESCC
T ss_pred EEEecc
Confidence 677663
No 125
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.31 E-value=0.011 Score=50.15 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=29.6
Q ss_pred CccceEEEecCCCC-CCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~-~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...++|.|.|||.+ .+ +++|+++|+++ |.|.++.+
T Consensus 23 ~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i 58 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYIL 58 (112)
T ss_dssp CCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEE
T ss_pred CCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 46889999999997 76 68899999987 67888876
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.017 Score=47.67 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~~ 59 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDFKH 59 (101)
T ss_dssp SSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEEEE
T ss_pred CCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEEEE
Confidence 5678999999999886 79999999987 56666544
No 127
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.30 E-value=0.012 Score=49.90 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (615)
+..|.|||+|++..+|..|.+.++.. ....+.|+.|
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35689999999999999999877654 2345666665
No 128
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.014 Score=47.68 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=27.8
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 186 ~~~~~TVlV~~iP~-~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
.+..+||.|.|||. +.+ +++|+++|+++ |.|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i 43 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 43 (96)
T ss_dssp --CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 36688999999997 776 79999999987 56666544
No 129
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.26 E-value=0.0092 Score=50.35 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=29.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
..++|.|.|||.+.+ +++|+++|+++ .|.+|.+++
T Consensus 15 ~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~~ 49 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLLK 49 (109)
T ss_dssp HHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEEE
Confidence 468999999999987 79999999976 477777754
No 130
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.26 E-value=0.011 Score=48.83 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=27.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (615)
+..|.|||+|++..+|..|.+ ++.. ....+.|+.|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 457899999999999999998 6544 23456676663
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=96.25 E-value=0.029 Score=45.98 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=29.1
Q ss_pred CCccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 186 ~~~~~TVlV~~iP~-~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
.+..++|.|.|||. +.+ +++|+++|+++ |.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~i 55 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 55 (97)
T ss_dssp CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 46789999999997 776 79999999987 56766544
No 132
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.24 E-value=0.017 Score=52.60 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=31.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+++ ++.|+++|+++ |.|.++.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEe
Confidence 35578999999999886 79999999998 6788888764
No 133
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.23 E-value=0.0069 Score=50.38 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ | +.++.+++
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G-~~~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRAT----ENDIYNFFSPL--N-PMRVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCC----HHHHHHSSCSC--C-CSEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--C-ceEEEEEE
Confidence 4678999999999986 79999999876 3 34777654
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.23 E-value=0.031 Score=49.80 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
....++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 70 ~~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~----------------------------------- 108 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWVARN----------------------------------- 108 (150)
T ss_dssp STTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEECSS-----------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEeeC-----------------------------------
Confidence 35679999999999986 68899999998 67877766432
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTV 343 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v 343 (615)
+.|.|||+|.+..+|..|.+.++... ...++|
T Consensus 109 ----------------------------------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 109 ----------------------------------------------PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp ----------------------------------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred ----------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 13689999999999999998776543 445677
Q ss_pred ecCCCC
Q 007153 344 SDAPES 349 (615)
Q Consensus 344 ~~AP~P 349 (615)
+.|-++
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 776443
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.016 Score=47.88 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPES 349 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P 349 (615)
..+.|||+|++.++|..|.+.++.. ....+.|+.|-.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 4579999999999999999876654 2345667766443
No 136
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.18 E-value=0.015 Score=48.52 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=59.4
Q ss_pred ccceEEEecCCCCCCCCC--hHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~--~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~ 265 (615)
.++||.|.|||.+..++. .+++|+++|+++ |.|.++.+.++
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~~~----------------------------------- 56 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPEE----------------------------------- 56 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECCCB-----------------------------------
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEeeCC-----------------------------------
Confidence 468999999998774311 378999999987 66777654310
Q ss_pred CCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCC-cee
Q 007153 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVD-TWT 342 (615)
Q Consensus 266 ~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~-~~~ 342 (615)
..++.|.|||+|++..+|..|.+.+... ... .++
T Consensus 57 -------------------------------------------~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 57 -------------------------------------------DGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp -------------------------------------------TTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred -------------------------------------------CCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 0134589999999999999999987653 333 678
Q ss_pred eecCCCC
Q 007153 343 VSDAPES 349 (615)
Q Consensus 343 v~~AP~P 349 (615)
|+.|-+-
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 8877543
No 137
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.14 E-value=0.0092 Score=51.04 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCC-CCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p-~~V~~v~i~~ 229 (615)
...+||.|.|||.+.+ +++|+++|+++.+ +.|.++.+++
T Consensus 15 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~~ 54 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFIY 54 (118)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEEE
Confidence 4578999999999987 7899999998732 1267777654
No 138
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.09 E-value=0.042 Score=53.90 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=74.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+++ +++|+++|+++ |.|.++.+.+
T Consensus 20 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~------------------------------------- 56 (261)
T 3sde_A 20 TQRCRLFVGNLPTDIT----EEDFKRLFERY--GEPSEVFINR------------------------------------- 56 (261)
T ss_dssp CGGGEEEEESCCTTCC----HHHHHHHTGGG--CCCSEEEEET-------------------------------------
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEeC-------------------------------------
Confidence 5578999999999986 89999999987 5677765510
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
..|.|||+|.+..+|..|.+.+... ....+.+.
T Consensus 57 ---------------------------------------------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 57 ---------------------------------------------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp ---------------------------------------------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 1279999999999999999876544 34567888
Q ss_pred cCCCCCCeeecCcCCchHHHHHHHH
Q 007153 345 DAPESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
.|.+..-|.=.||.....+.-++.+
T Consensus 92 ~a~~~~~l~v~nl~~~~t~~~l~~~ 116 (261)
T 3sde_A 92 FATHGAALTVKNLSPVVSNELLEQA 116 (261)
T ss_dssp ECCCSSEEEEESCCTTCCHHHHHHH
T ss_pred ecccCCcccccCCCCCCCHHHHHHH
Confidence 8888888899999877666665554
No 139
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.06 E-value=0.022 Score=47.57 Aligned_cols=84 Identities=8% Similarity=-0.024 Sum_probs=60.1
Q ss_pred CccceEEEecCC--CCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 007153 187 PQQFAVLVRDLP--DLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 264 (615)
Q Consensus 187 ~~~~TVlV~~iP--~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~ 264 (615)
..+++|.+.|+. .++.+ +.+++|++.|+++ |+|.++.+.+|...
T Consensus 6 ~~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~~~------------------------------- 51 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIPGA------------------------------- 51 (105)
T ss_dssp SCCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECSSC-------------------------------
T ss_pred CCCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCCCC-------------------------------
Confidence 457899999986 23332 3488999999987 78999988754210
Q ss_pred CCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCcee
Q 007153 265 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWT 342 (615)
Q Consensus 265 ~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~ 342 (615)
..+..|.|||+|++..+|..|.+.++.. ....+.
T Consensus 52 --------------------------------------------~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 52 --------------------------------------------PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp --------------------------------------------CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred --------------------------------------------CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 0124689999999999999999988765 344566
Q ss_pred eecCCC
Q 007153 343 VSDAPE 348 (615)
Q Consensus 343 v~~AP~ 348 (615)
+..|++
T Consensus 88 v~~a~~ 93 (105)
T 2pe8_A 88 ACFYNL 93 (105)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 777753
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=96.05 E-value=0.016 Score=46.43 Aligned_cols=37 Identities=22% Similarity=0.149 Sum_probs=29.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCC
Q 007153 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESR 350 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~ 350 (615)
|.|||+|++.++|..|.+.++.. ....++++.||...
T Consensus 41 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 41 RTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 68999999999999999977654 34567788887644
No 141
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.04 E-value=0.016 Score=50.50 Aligned_cols=37 Identities=8% Similarity=0.135 Sum_probs=29.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce--EEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~--v~i~~ 229 (615)
....||.|.|||.+.+ +++|+++|+++ |.|.. |.+++
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~~ 59 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVIK 59 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECCB
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEEE
Confidence 4578999999999987 68999999988 56644 66554
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.99 E-value=0.023 Score=46.77 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=27.2
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (615)
..+.|||+|++.++|..|.+.++.. +...++|+.|-
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4589999999999999999976643 33456666653
No 143
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=95.98 E-value=0.022 Score=53.80 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 123 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TTSCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 4568999999999876 89999999987 67888887653
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=95.95 E-value=0.0085 Score=52.99 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=28.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||.+.+ +++|+++|+++ | +.+|.+++
T Consensus 44 ~~~~~lfV~nLp~~~t----e~dL~~~F~~~--G-i~~v~i~~ 79 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT----ENDIYNFFSPL--N-PVRVHIEI 79 (139)
T ss_dssp -CCCCEECCSCCTTCC----HHHHHHHHCSC--C-CSEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEE
Confidence 4578999999999987 79999999986 4 55666543
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.027 Score=50.48 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.8
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 85 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 5678999999999886 79999999876 67888877653
No 146
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=95.87 E-value=0.029 Score=50.80 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=31.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 93 ~~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 4678999999999876 79999999987 6688887764
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.85 E-value=0.03 Score=45.25 Aligned_cols=36 Identities=19% Similarity=0.097 Sum_probs=27.2
Q ss_pred CceEEEEeCCHHHHHHHHHHhcc-C--CCCceeeecCCC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHA-Q--LVDTWTVSDAPE 348 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~-~--~~~~~~v~~AP~ 348 (615)
.+.|||+|++.++|..|.+.++. . +...++|+.|-.
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 47899999999999999987765 3 344566766633
No 148
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=95.82 E-value=0.075 Score=50.91 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=30.2
Q ss_pred CccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~-~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
+..+||.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 32 ~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~ 68 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 68 (229)
T ss_dssp CCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEE
Confidence 5679999999999 775 89999999998 668777664
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.78 E-value=0.029 Score=50.49 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 87 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 123 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILR 123 (168)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEE
T ss_pred CCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEE
Confidence 4678999999999876 79999999887 6788887765
No 150
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.77 E-value=0.058 Score=43.28 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=58.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
..+..++|+||+.+.+ ++.|++.|.++ |+|.++++..
T Consensus 5 ~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l~~------------------------------------- 41 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHPYL------------------------------------- 41 (89)
T ss_dssp CCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEEET-------------------------------------
T ss_pred CccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEEcC-------------------------------------
Confidence 5688999999999987 69999999999 6788766521
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
+.|.|||+|.++++|..|.+.++.. ....++|+
T Consensus 42 ---------------------------------------------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 42 ---------------------------------------------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp ---------------------------------------------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ---------------------------------------------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 2489999999999999999987654 34457787
Q ss_pred cC
Q 007153 345 DA 346 (615)
Q Consensus 345 ~A 346 (615)
.|
T Consensus 77 ~A 78 (89)
T 2wbr_A 77 SP 78 (89)
T ss_dssp CC
T ss_pred EC
Confidence 77
No 151
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.75 E-value=0.0097 Score=51.32 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=25.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~ 224 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~ 54 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAE----NKHVIDFFKKL--DIVED 54 (124)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS--CBCTT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCccc
Confidence 3568999999999886 79999999876 45544
No 152
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.73 E-value=0.019 Score=55.35 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
..++|.|.|||.+++ +++|+++|+++....|.+|.+.+|
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEec
Confidence 567999999999986 799999999873227888888754
No 153
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.71 E-value=0.04 Score=54.61 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=45.3
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCCCeeecCcCCchHHHHHHHH
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
.|.|||+|.+.++|..|.+.++.. ....+.++.+|...-|.=.||..+..+.-++.+
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~ 115 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEEL 115 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHH
Confidence 468999999999999999876644 345677888888888999999887777666654
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=95.66 E-value=0.017 Score=50.13 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=27.9
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcc--eEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY--RSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~--~v~i~ 228 (615)
..+++|.|.|||.+.+ +++|+++|+++ + |. +|.++
T Consensus 40 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--~-i~~~~v~i~ 76 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT----KEEIVQFFSGL--E-IVPNGITLP 76 (126)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHTTTS--C-EEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC--C-ceeeEEEEE
Confidence 4578999999999987 79999999976 3 44 55554
No 155
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.62 E-value=0.043 Score=49.16 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4568999999999886 79999999987 6788887764
No 156
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.59 E-value=0.079 Score=49.98 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=29.3
Q ss_pred CccceEEEecCC-CCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP-~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
+...||+|.||| .+++ +++|++.|+++ |.|.++.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~ 38 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFM 38 (205)
T ss_dssp CCCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 457899999999 6665 78999999987 678887653
No 157
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.57 E-value=0.069 Score=49.64 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.5
Q ss_pred ccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 188 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 188 ~~~TVlV~~iP~-~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
+++||.|.|||. +.+ +++|+++|+++ |.|.++.+.
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~ 37 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 37 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECS
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 468999999999 775 89999999987 567776553
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.49 E-value=0.028 Score=50.92 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=31.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 92 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 4478999999999886 79999999987 67888877653
No 159
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.058 Score=43.70 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v 225 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4578999999999886 79999999987 566654
No 160
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.43 E-value=0.024 Score=53.11 Aligned_cols=35 Identities=6% Similarity=0.204 Sum_probs=30.4
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 189 ~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.+||.|.|+|.+.+ .++|+++|+++ |.|.+|.+.+
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEE
Confidence 58999999999876 79999999987 6788888765
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=95.34 E-value=0.056 Score=48.56 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=29.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 121 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLML 121 (167)
T ss_dssp HCEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECCC
T ss_pred CCCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEEE
Confidence 467999999999886 79999999987 6788877654
No 162
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.12 E-value=0.093 Score=52.14 Aligned_cols=99 Identities=24% Similarity=0.245 Sum_probs=70.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 39 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 78 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSLK---------------------------------- 78 (292)
T ss_dssp ---CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 5689999999999886 79999999987 6788887754210
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
...|.|||+|.+.++|..|.+ +... +...+.+.
T Consensus 79 --------------------------------------------~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 79 --------------------------------------------KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp --------------------------------------------SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred --------------------------------------------CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 124899999999999999995 3322 22345566
Q ss_pred cCCCCCCeeecCcCCchHHHHHHHHHH
Q 007153 345 DAPESRELIWNNLNIKFFQRQIRQYVV 371 (615)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (615)
.+ ++.-|.=.||.....+.-++.++.
T Consensus 114 ~~-~~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 114 HL-TECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp EC-CSCEEEEECCCTTCCHHHHHHHHH
T ss_pred EC-CCCEEEEECCCCCCCHHHHHHHHH
Confidence 66 356677788887776666666543
No 163
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.07 E-value=0.0058 Score=55.84 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=28.8
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (615)
++.|.|||+|++.++|..|.+.++.. ....+.++.|.
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 134 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56789999999999999999987653 33456777763
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.06 E-value=0.047 Score=50.58 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 4568999999999876 79999999977 67888887653
No 165
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.02 E-value=0.069 Score=56.64 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=62.1
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~ 267 (615)
...||+|.|||.+++ ++.|+++|+++ |.|.+|.++.|..
T Consensus 101 ~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 139 (437)
T 3pgw_S 101 AFKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVYSKR----------------------------------- 139 (437)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeeccCC-----------------------------------
Confidence 357999999999886 79999999987 6788887764310
Q ss_pred CcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeeec
Q 007153 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSD 345 (615)
Q Consensus 268 rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~ 345 (615)
..+..|.|||+|.+..+|..|++.++... ...+.|..
T Consensus 140 -----------------------------------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 140 -----------------------------------------SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred -----------------------------------------CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 11346899999999999999998876543 34566766
Q ss_pred CCCCCCeee
Q 007153 346 APESRELIW 354 (615)
Q Consensus 346 AP~P~DIiW 354 (615)
|-....=-|
T Consensus 179 a~~~~~~~~ 187 (437)
T 3pgw_S 179 ERGRTVKGW 187 (437)
T ss_pred eCCCCCCCC
Confidence 644333334
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.99 E-value=0.056 Score=51.21 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.6
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred ccccceECCcccccH----HHHHHHHHhhc--CCeEEEEeec
Confidence 457899999999886 79999999988 6788887764
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=94.90 E-value=0.063 Score=49.76 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=59.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
...++|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+|..
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~~~---------------------------------- 151 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKDSA---------------------------------- 151 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeecCC----------------------------------
Confidence 4579999999999886 79999999987 6788887764310
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~ 344 (615)
...+.|.|||+|++..+|..|.+.++.. +...+.++
T Consensus 152 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 152 ------------------------------------------TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp ------------------------------------------TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 0124689999999999999999977654 23456676
Q ss_pred cC
Q 007153 345 DA 346 (615)
Q Consensus 345 ~A 346 (615)
.|
T Consensus 190 ~a 191 (198)
T 2yh0_A 190 RA 191 (198)
T ss_dssp ES
T ss_pred EC
Confidence 66
No 168
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=94.87 E-value=0.024 Score=50.09 Aligned_cols=33 Identities=12% Similarity=0.216 Sum_probs=27.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcce
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~ 224 (615)
.....+|.|.|||.+++ +++|+++|+++ |.|.+
T Consensus 42 ~~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~ 74 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQ----EKDLKYIFGRY--VDFSS 74 (143)
T ss_dssp CSCCSEEEEEEECTTCC----HHHHHHHHGGG--CCTTC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCccc
Confidence 35678999999999886 79999999987 55554
No 169
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=94.83 E-value=0.064 Score=53.11 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=62.3
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~ 266 (615)
....+|.|.|+|.++.+ +++|+++|+++ |.|.++.+.+|.
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 45789999999999755 89999999987 678888775321
Q ss_pred CCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhhhccCCCceEEEEeCCHHHHHHHHHHhccCC--CCceeee
Q 007153 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (615)
Q Consensus 267 ~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~~~~~~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~ 344 (615)
+.++.|.|||+|++..+|..|.+.++... ...+.+.
T Consensus 222 ------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 222 ------------------------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp ------------------------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 01245899999999999999999876543 3456777
Q ss_pred cCCCCC
Q 007153 345 DAPESR 350 (615)
Q Consensus 345 ~AP~P~ 350 (615)
.|.+..
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 775444
No 170
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=94.71 E-value=0.2 Score=45.28 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=27.4
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 190 ~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
.+|.|.|+|.+.+ +++|++.|+++ |+|.++.+
T Consensus 47 l~l~VgNL~~~vt----ed~L~~~Fs~f--G~V~~V~i 78 (164)
T 1sjr_A 47 LRIIVENLFYPVT----LDVLHQIFSKF--GTVLKIIT 78 (164)
T ss_dssp EEEEECSCCSCCC----HHHHHHHHHHH--SCEEEEEE
T ss_pred EEEEEeCcCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 5678999998876 78999999998 78888876
No 171
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=93.60 E-value=0.0061 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.4
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~ 217 (615)
...++|.|.|||.+.+ +++|+++|+++
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~ 31 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVT----IESVADYFKQI 31 (116)
Confidence 5678999999999886 68899999877
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=94.43 E-value=0.26 Score=48.49 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=26.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHH----HHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~----~~f~~~~p~~V~~v~i 227 (615)
...+||.|.|||.+.+ +++|+ ++|+++ |.|.++.+
T Consensus 7 ~~~~~l~V~nlp~~~~----~~~l~~~L~~~F~~~--G~i~~v~~ 45 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIK----KDELKKSLYAIFSQF--GQILDILV 45 (282)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHHhcc--CCeEEEEE
Confidence 5689999999999887 56655 677665 56777654
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.32 E-value=0.057 Score=43.87 Aligned_cols=41 Identities=24% Similarity=0.252 Sum_probs=35.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCCCCCeee
Q 007153 314 GAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIW 354 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~P~DIiW 354 (615)
|.|||+|+++++|+.|.+.++... ...+++..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 899999999999999998887654 45789999999999863
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.18 E-value=0.21 Score=42.17 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=28.1
Q ss_pred CccceEEE--ecCCCCCCCCChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV--~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
...+++.| -|+|.+.+ +++|+++|+++ |.|.++.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~i 59 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALLM 59 (114)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEEC
T ss_pred CCCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 45688999 55999886 79999999998 57777654
No 175
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.10 E-value=0.51 Score=42.26 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=37.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC------CCCCeeecCcCCchHHHHHHHHH
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP------ESRELIWNNLNIKFFQRQIRQYV 370 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 370 (615)
.|.|||+|.+.++|..|. .++.. ....+.++.+. .+.-|.=.||..+..+.-++..+
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 589999999999999998 44332 22334444432 23557777887766666666543
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=93.87 E-value=0.16 Score=47.76 Aligned_cols=35 Identities=9% Similarity=-0.077 Sum_probs=28.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCc--ceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V--~~v~i 227 (615)
+..+||.|.|||.+.. +++|+++|+++ |.| .++.+
T Consensus 121 ~p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~ 157 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKV 157 (205)
T ss_dssp CCCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEE
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEE
Confidence 5678999999999876 79999999998 555 56654
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=93.78 E-value=0.25 Score=45.79 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=29.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEE
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~-~V~~v~i 227 (615)
+..++|.|.|+|.+.+ +++|+++|+++ | .|.++.+
T Consensus 118 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i 153 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKF 153 (198)
T ss_dssp CCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEE
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEE
Confidence 5589999999999876 79999999988 6 6777765
No 178
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.70 E-value=0.17 Score=49.44 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+|.|.|+|.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~ 130 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVV 130 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeee
Confidence 467999999999886 79999999987 6788888765
No 179
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=93.65 E-value=0.17 Score=48.87 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=31.0
Q ss_pred CccceEEEecCCCCCCC-----CChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKG-----QSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~-----~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
...+||.|.|||.+..+ ...+++|+++|+++ |.|++|.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~ 176 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYV 176 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEE
Confidence 46789999999988631 01289999999988 788888764
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=93.19 E-value=0.39 Score=45.81 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=29.6
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~-~V~~v~i~ 228 (615)
+..+||.|.|+|.+.+ +++|+++|+++ | .|.++.+.
T Consensus 149 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 185 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFF 185 (229)
T ss_dssp CSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEEC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEE
Confidence 4579999999999876 79999999987 6 67776653
No 181
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=93.00 E-value=0.61 Score=42.85 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.9
Q ss_pred ccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 007153 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (615)
Q Consensus 188 ~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~ 217 (615)
.++||.|.|||.+.+ +++|+++|+++
T Consensus 3 ~~~~l~V~nLp~~~t----e~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGIT----EEAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCC----HHHHHHHHHHH
Confidence 579999999999986 79999999987
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=92.99 E-value=0.34 Score=47.62 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=29.7
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
+..+||.|.|||.+.+ +++|+++|+++ |.|.++.+.
T Consensus 205 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 4678999999999876 79999999987 677776653
No 183
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.97 E-value=0.61 Score=39.96 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=29.7
Q ss_pred c-eEEEEeCCHHHHHHHHHHhccCCC----CceeeecCCCCCC
Q 007153 314 G-AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESRE 351 (615)
Q Consensus 314 ~-~AFVtF~s~~~a~~a~q~~~~~~~----~~~~v~~AP~P~D 351 (615)
| .|||+|++..+|..|.+.++...- ..++|+.|-.++.
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 5 599999999999999998876542 3678888855543
No 184
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=92.96 E-value=0.27 Score=40.77 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHH-hhhh-----------ccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 007153 291 EKIKEIIPKLEAEQ-KITL-----------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (615)
Q Consensus 291 ~~l~~l~~~I~~~~-~~~~-----------~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (615)
+..+++.+++.++= ++.+ ..++.|.|||+|++..+|..|.+.++.. ....+.++.+|
T Consensus 34 ~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 34 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 34445566666655 4321 1234789999999999999999987654 23345566665
No 185
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.95 E-value=0.15 Score=42.53 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=34.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
.+...+|.|.|||.+.+ +++|++.|+++ |+|.++.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 36789999999999986 79999999998 78999998764
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.65 E-value=0.39 Score=40.15 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhh--------ccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCCCCCeeecC
Q 007153 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPESRELIWNN 356 (615)
Q Consensus 292 ~l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~P~DIiW~N 356 (615)
..+++++++.++=++.. +..+.|.|||+|++..+|..|.+.++.. +...+.++.|.+..|..+..
T Consensus 35 ~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 35 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 34556666665433321 1235799999999999999999887654 34567788887766665544
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=92.58 E-value=0.39 Score=47.52 Aligned_cols=36 Identities=6% Similarity=0.159 Sum_probs=30.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCC-CcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~-~V~~v~i~ 228 (615)
...++|.|.|+|.+.+ +++|+++|+++ | .|.++.+.
T Consensus 115 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 151 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYT----QRNIRDLLQDI--NVVALSIRLP 151 (292)
T ss_dssp CCSCEEEEECCCTTCC----HHHHHHHHHHT--TCCCCEEECC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHh--CCCeEEEEEE
Confidence 3578999999999986 79999999987 5 77777654
No 188
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.10 E-value=0.22 Score=39.10 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
....+||.|.|||.+.+ +++|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 35678999999999876 79999999987 6788888874
No 189
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.41 E-value=0.23 Score=42.37 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 28 ~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 35689999999999976 79999999987 78999988753
No 190
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=91.21 E-value=0.22 Score=40.78 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=33.1
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecC
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d 230 (615)
...++||.|.|||.+.+ +++|+++|+++ |.|.++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 35679999999999886 79999999988 68888888753
No 191
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=91.16 E-value=0.84 Score=39.45 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=27.4
Q ss_pred eEEEEeCCHHHHHHHHHHhccCC----CCceeeecCCCC
Q 007153 315 AALVFFTSRVAAASAAQSLHAQL----VDTWTVSDAPES 349 (615)
Q Consensus 315 ~AFVtF~s~~~a~~a~q~~~~~~----~~~~~v~~AP~P 349 (615)
.|||+|++..+|..|.+.+.... ...++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 59999999999999999887653 245677777544
No 192
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.89 E-value=0.25 Score=40.69 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=32.5
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
.+..++|.|.|||.+.+ +++|+++|+++ |.|.++.+..
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~ 49 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLK 49 (101)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEC
Confidence 35678999999999876 79999999987 7898988765
No 193
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=90.15 E-value=0.38 Score=40.61 Aligned_cols=56 Identities=25% Similarity=0.146 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhhh--------ccCCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCC
Q 007153 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAP 347 (615)
Q Consensus 292 ~l~~l~~~I~~~~~~~~--------~~~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP 347 (615)
..+++++++.++=++.+ .....|.|||+|++..+|..|.+.++.. ....+.++.+|
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 34567777776654432 1224699999999999999999988754 23344555443
No 194
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.46 E-value=0.27 Score=40.59 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=32.3
Q ss_pred CccceEEEecCCC-CCCCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~-~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...++|.|.|||. +.+ +++|++.|+++ |.|.++.+.+
T Consensus 13 ~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~~ 50 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLILN 50 (102)
T ss_dssp CCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 4678999999999 775 79999999988 7899998875
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.35 E-value=0.75 Score=38.06 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=27.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP 347 (615)
..|.|||+|++..+|..|.+.++... ...+++..+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 46899999999999999999887652 3345555544
No 196
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.42 E-value=0.7 Score=37.94 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccCCCCceeeecCC
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP 347 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~~~~~~~v~~AP 347 (615)
+..|.|||+|++..+|..|.+.........++|+.|-
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 3568999999999999999987544444456666663
No 197
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=84.64 E-value=1.6 Score=33.98 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=31.5
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHh----C----CC-CcceEEEecC
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----PD-TFYRSMVVTN 230 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~----~----p~-~V~~v~i~~d 230 (615)
...+||.|.|||.+.+ +++|+++|+++ . |+ .|.++.+.++
T Consensus 4 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 4579999999999886 79999999987 3 11 6778777643
No 198
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.90 E-value=1.3 Score=35.68 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (615)
..+.|||+|++..+|..|.+.++.. ....+.|+.|-.
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 4689999999999999999876543 334566766643
No 199
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=82.91 E-value=1.1 Score=35.77 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=28.4
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (615)
..|.|||+|++..+|..|.+.++.. ....+.++.|.+
T Consensus 52 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 52 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4589999999999999999976643 344577777743
No 200
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=78.80 E-value=2.8 Score=35.44 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=27.9
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (615)
..|.|||+|++.++|..|.+.+... ....+.|+.|-.
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 4689999999999999999876654 234566666643
No 201
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.55 E-value=2.3 Score=34.84 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=30.2
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHH---hCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~---~~p~~V~~v~i~ 228 (615)
....+|.|+|+|++.. ++.|+-|||+ -.+|.|+++..-
T Consensus 6 ~~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred cCccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEEc
Confidence 3467999999999875 7899999998 356788877653
No 202
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=78.50 E-value=2.5 Score=36.45 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=30.7
Q ss_pred ceEEEecC----CCCCCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 190 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 190 ~TVlV~~i----P~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
..|.|.|+ |.+.. ++.|++||+++ |+|.++.+..|-
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp 42 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDP 42 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 46899999 98876 89999999987 689888888764
No 203
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.57 E-value=2.1 Score=33.16 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHh
Q 007153 312 QLGAALVFFTSRVAAASAAQSL 333 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~ 333 (615)
..+.|||+|++.++|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3589999999999999999876
No 204
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.64 E-value=2.9 Score=34.17 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.9
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (615)
.|.|||+|++.++|..|.+.++.. ....+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 689999999999999999865422 23455666664
No 205
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.92 E-value=2.2 Score=34.54 Aligned_cols=38 Identities=13% Similarity=0.146 Sum_probs=26.1
Q ss_pred Cccce-EEEecCCCCCCCCChHHHHHHHHHHhCCCCcceE
Q 007153 187 PQQFA-VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (615)
Q Consensus 187 ~~~~T-VlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v 225 (615)
+...| +.|.|||.+.+.++.++.|++.|+++ +|+|.+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 34455 88999999987433344577888877 2477665
No 206
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.39 E-value=3.2 Score=34.02 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=26.9
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCCC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAPE 348 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP~ 348 (615)
.+.|||+|++.++|..|.+.++.. ....+.|..|-.
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 478999999999999999876643 234566666643
No 207
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=72.36 E-value=2.3 Score=35.92 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=28.3
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccCC--CCceeeecCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPE 348 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~~--~~~~~v~~AP~ 348 (615)
..|.|||+|++..+|..|.+.++... ...+++..+|+
T Consensus 70 ~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 70 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred ceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 35899999999999999999987652 34456666553
No 208
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=71.33 E-value=6.1 Score=35.08 Aligned_cols=59 Identities=15% Similarity=0.195 Sum_probs=40.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC--------CCCeeecCcCCchHHHHHHHHH
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE--------SRELIWNNLNIKFFQRQIRQYV 370 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~ 370 (615)
+..|.|||+|.+.++|..|.+ +... ....+.+..|.+ ..-|.=.||..+..+.-++..+
T Consensus 52 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 52 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 120 (175)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHC
T ss_pred ccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHH
Confidence 467899999999999999996 4332 234456665542 2347777887766666666544
No 209
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.69 E-value=4.1 Score=33.57 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CceEEEEeCCHHHHHHHHHHhccC----CCCceeeecCC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~~----~~~~~~v~~AP 347 (615)
.|.|||+|++.++|..|.+.+... ....+.|..|.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999999866432 23345566553
No 210
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.12 E-value=4.3 Score=34.27 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=26.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhcc----CCCCceeeecCC
Q 007153 313 LGAALVFFTSRVAAASAAQSLHA----QLVDTWTVSDAP 347 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~~----~~~~~~~v~~AP 347 (615)
.|.|||+|++.++|..|.+.+.. -....+.|..|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 58999999999999999886642 133456666663
No 211
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=67.98 E-value=3.2 Score=32.99 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.4
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHh
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~ 217 (615)
....+||.|.|||.+.+ +++|+++|+++
T Consensus 13 ~~~~~~l~V~nL~~~~t----~~~l~~~F~~~ 40 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNIT----EDELKEVFEDA 40 (96)
T ss_dssp TTGGGEEEEESCCSSCC----HHHHHHHHCSE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhhC
Confidence 35679999999999886 79999999886
No 212
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=67.84 E-value=3.5 Score=34.77 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=33.9
Q ss_pred CccceEEEecC--CCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 007153 187 PQQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (615)
Q Consensus 187 ~~~~TVlV~~i--P~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~ 232 (615)
+.+++|.++|+ |.++.+ +.+++|++.|+++ |.|.+|.+++|..
T Consensus 18 ~ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEKQ 62 (118)
T ss_dssp HSCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecCC
Confidence 46899999997 444443 5789999999987 7899999988753
No 213
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=63.29 E-value=4.6 Score=31.28 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.5
Q ss_pred CCceEEEEeCCHHHHHHHHHHhcc
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
..|.|||+|++.++|..|. .++.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcCC
Confidence 3799999999999999998 5543
No 214
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.53 E-value=45 Score=27.30 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=19.3
Q ss_pred ccCCCCcccc------HHHHHHHHHHHHHHHHHHHHh
Q 007153 275 FLGLLGKRVD------AIEYYNEKIKEIIPKLEAEQK 305 (615)
Q Consensus 275 ~~~~~g~kvd------ai~~~~~~l~~l~~~I~~~~~ 305 (615)
.|+.||..++ .++.+++++++++.++.+.++
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~ 85 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLID 85 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887655 355666666666666665443
No 215
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=54.94 E-value=9.6 Score=31.15 Aligned_cols=44 Identities=7% Similarity=-0.032 Sum_probs=32.7
Q ss_pred CccceEEEecC--CCCCCCC----ChHHHHHHHHHHhCCCCcceEEEecCch
Q 007153 187 PQQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (615)
Q Consensus 187 ~~~~TVlV~~i--P~~~~~~----~~~~~l~~~f~~~~p~~V~~v~i~~d~~ 232 (615)
..++.|.++|+ |.++.++ +..++|++.|+++ |.|.++.+.+|..
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 35788999997 6666541 2347888889877 7899999988753
No 216
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.80 E-value=9.2 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=23.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC--CCCceeeecC
Q 007153 314 GAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDA 346 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~A 346 (615)
+.+||||++.++|..|.+ +... ....++|+.|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 449999999999999988 4433 2345666665
No 217
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.01 E-value=26 Score=27.59 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=27.1
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
...+||.|.|+ +.+ +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t----~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMT----PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCC----HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CCC----HHHHHHHHhhC--CCEEEEEec
Confidence 45789999995 443 89999999987 678888774
No 218
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.14 E-value=17 Score=30.66 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=34.0
Q ss_pred CCccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEecCch
Q 007153 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~~ 232 (615)
.+.-.-|.|.|+|.+..+ .++|++.|+++ |+|..|.+.+|-.
T Consensus 15 ~~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGAK 56 (121)
T ss_dssp CCCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTCS
T ss_pred ccCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCCC
Confidence 366788999999999445 89999999986 6788888877653
No 219
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=43.04 E-value=19 Score=33.53 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=28.8
Q ss_pred CCceEEEEeCCHHHHHHHHHHhccC--CCCceeeecCCC
Q 007153 312 QLGAALVFFTSRVAAASAAQSLHAQ--LVDTWTVSDAPE 348 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~~~v~~AP~ 348 (615)
..|.+||.|++..+|..|.+.+... ....+.+..+|+
T Consensus 174 ~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 174 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred ceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3589999999999999999998765 344566666653
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=42.27 E-value=39 Score=29.21 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=40.0
Q ss_pred CCCceEEEEeCCHHHHHHHHHHhccC--CCCc-------------------eeeecCCCCCCeeecCcCCchHHHHHHHH
Q 007153 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDT-------------------WTVSDAPESRELIWNNLNIKFFQRQIRQY 369 (615)
Q Consensus 311 ~~~~~AFVtF~s~~~a~~a~q~~~~~--~~~~-------------------~~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 369 (615)
+..|.|||+|.+..+|..|.+..... .... ......+.+.-|.-.||...-.+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 45799999999999999998764321 0000 11122344567888899887777777765
Q ss_pred HH
Q 007153 370 VV 371 (615)
Q Consensus 370 ~~ 371 (615)
+.
T Consensus 91 F~ 92 (158)
T 2kn4_A 91 FE 92 (158)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 221
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=40.51 E-value=5.9 Score=31.84 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.2
Q ss_pred CCceEEEEeCCHHHHHHHHH
Q 007153 312 QLGAALVFFTSRVAAASAAQ 331 (615)
Q Consensus 312 ~~~~AFVtF~s~~~a~~a~q 331 (615)
..|.|||+|++.++|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 46899999999999999988
No 222
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=36.87 E-value=21 Score=35.99 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhccC
Q 007153 314 GAALVFFTSRVAAASAAQSLHAQ 336 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~~ 336 (615)
|.|||+|++.++|+.|.+.+...
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 79999999999999999987643
No 223
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.27 E-value=18 Score=29.60 Aligned_cols=39 Identities=5% Similarity=0.094 Sum_probs=27.4
Q ss_pred CccceEEEecCC--CCCCCC-----ChHHHHHHHHHHhCCCCcceEEE
Q 007153 187 PQQFAVLVRDLP--DLPKGQ-----SRKEQVDSYFKAIYPDTFYRSMV 227 (615)
Q Consensus 187 ~~~~TVlV~~iP--~~~~~~-----~~~~~l~~~f~~~~p~~V~~v~i 227 (615)
..++||+++|+. .++.++ +.+++|+++|+++ |.|.++.+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i 58 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLL 58 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEE
Confidence 458999999994 332110 1257899999887 68989866
No 224
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.00 E-value=53 Score=26.78 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=32.8
Q ss_pred cceEEEecCCCCC-CCCChHHHHHHHHHHhCCC-------CcceEEEecCchH
Q 007153 189 QFAVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNKE 233 (615)
Q Consensus 189 ~~TVlV~~iP~~~-~~~~~~~~l~~~f~~~~p~-------~V~~v~i~~d~~~ 233 (615)
-.|+.++|+|.++ .+++.++++++.|+++.|. +..++.+.++..+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
Confidence 4589999999877 4445568888888887653 4568878776643
No 225
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.51 E-value=23 Score=28.41 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.7
Q ss_pred ceEEEEeCCHHHHHHHHHHhcc
Q 007153 314 GAALVFFTSRVAAASAAQSLHA 335 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~~~~ 335 (615)
..+||||++.++|..|.+ +..
T Consensus 59 d~~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 59 GQMLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp TEEEEECSCSHHHHHHHH-GGG
T ss_pred CcEEEEEcChHHHHHHHh-cCC
Confidence 349999999999999998 543
No 226
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=33.04 E-value=23 Score=22.97 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHHH
Q 007153 576 SCIAPLIIPFGVVYFAL 592 (615)
Q Consensus 576 s~i~Plil~~~~~yf~~ 592 (615)
+.+.|+++.++.+||++
T Consensus 4 ~~~l~~v~~~~ifYFl~ 20 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMI 20 (37)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678888888888875
No 227
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.86 E-value=1e+02 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 007153 282 RVDAIEYYNEKIKEIIPKLE 301 (615)
Q Consensus 282 kvdai~~~~~~l~~l~~~I~ 301 (615)
|.|-|.|+++++..+..+|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888877775
No 228
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.95 E-value=54 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=23.3
Q ss_pred ceEEEEeCCHHHHHHHHHH-hccCCCCceeeecC
Q 007153 314 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDA 346 (615)
Q Consensus 314 ~~AFVtF~s~~~a~~a~q~-~~~~~~~~~~v~~A 346 (615)
+.|.|||.+...|+..++. -|.-+...+.|.+.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 8999999999999888775 33334455555543
No 229
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.54 E-value=55 Score=25.98 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=31.1
Q ss_pred CCccceEEEecCCCCC----CCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 186 RPQQFAVLVRDLPDLP----KGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 186 ~~~~~TVlV~~iP~~~----~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
.|.+=||+|.-.|..- -+++.-.+|.+.|.++ |.|..+.++.|.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 5789999999887422 2222336788888886 678888877765
No 230
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=29.10 E-value=1.4e+02 Score=24.71 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=38.4
Q ss_pred hcCCCCCCccceEEEecCCCCCCCCChHHHHHHHHHHh---CCCCcceEEEecCchH
Q 007153 180 LMSPEVRPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI---YPDTFYRSMVVTNNKE 233 (615)
Q Consensus 180 l~~~~~~~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~---~p~~V~~v~i~~d~~~ 233 (615)
+.|......++|+-+-+||..+. ++.++.+.+.. -+|.+.++.+.-|.+.
T Consensus 12 l~s~~~~~~~rtiaL~~ipDtvn----darIr~lve~~~~i~~g~i~KI~L~pDH~G 64 (117)
T 2l9w_A 12 LASRNSKELETLICLFPLSDKVS----PSLICQFLQEEIHINEKDIRKILLVSDFNG 64 (117)
T ss_dssp HHCCCTTTTTSCEEEECCCTTCC----HHHHHHHHHHHTCCCTTTCSEEEEETTTTE
T ss_pred HhccCCccCCcEEEEecCCCCCC----HHHHHHHHhhhhccCccceeEEEEecCCCc
Confidence 44554456799999999998876 79999999887 2467888888877654
No 231
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=28.65 E-value=52 Score=27.28 Aligned_cols=34 Identities=6% Similarity=-0.077 Sum_probs=27.0
Q ss_pred CccceEEEecCCCCCCCCChHHHHHHHHHHhCCCCcceEEEe
Q 007153 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~~~~~~~~~l~~~f~~~~p~~V~~v~i~ 228 (615)
...+||.|.|+ +. + +++|+++|+++ |.|.++.+.
T Consensus 37 ~~~~~lfVgnl--~~-t---e~~L~~~F~~~--G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DM-T---PTLLRGAFSPF--GNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SC-C---HHHHHHHHSTT--CCCSCEEEE
T ss_pred CCCCEEEEcCC--CC-C---HHHHHHHHHcc--CCEEEEEEe
Confidence 45789999995 33 3 89999999987 678887775
No 232
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.80 E-value=78 Score=18.10 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007153 289 YNEKIKEIIPKLEAEQKIT 307 (615)
Q Consensus 289 ~~~~l~~l~~~I~~~~~~~ 307 (615)
+-++++.+++.+.+.|++.
T Consensus 6 lykeledlqerlrklrkkl 24 (27)
T 3twe_A 6 LYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3467888888888888764
No 233
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.28 E-value=2.5e+02 Score=22.59 Aligned_cols=70 Identities=11% Similarity=0.028 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCCCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHHhhh
Q 007153 233 EANKIYEELEGYKKKLARAEAVYAESKSA--GKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKIT 307 (615)
Q Consensus 233 ~l~~l~~~r~~~~~~Le~~~~~~~~~~~~--~~~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~~~~ 307 (615)
+++.|..+++++.++.+....+....--. ..+.+.+-.|=. -..-..+.+-.++++++|+++++++|...
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~-----~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMS-----LNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEES-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeec-----CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777766665532111 111111111100 01223344456678888888888888765
No 234
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=23.52 E-value=1.5e+02 Score=24.48 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 007153 284 DAIEYYNEKIKEIIPKLEAEQKI 306 (615)
Q Consensus 284 dai~~~~~~l~~l~~~I~~~~~~ 306 (615)
+.|.-+++|++.++.+|...+..
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999887644
No 235
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.35 E-value=2.5e+02 Score=21.09 Aligned_cols=23 Identities=9% Similarity=-0.051 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 007153 286 IEYYNEKIKEIIPKLEAEQKITL 308 (615)
Q Consensus 286 i~~~~~~l~~l~~~I~~~~~~~~ 308 (615)
|+-++++|.+.+++|.++|.+.+
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666665543
No 236
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.71 E-value=65 Score=25.80 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=31.5
Q ss_pred CCCccceEEEecCCCC-----CCCCChHHHHHHHHHHhCCCCcceEEEecCc
Q 007153 185 VRPQQFAVLVRDLPDL-----PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (615)
Q Consensus 185 ~~~~~~TVlV~~iP~~-----~~~~~~~~~l~~~f~~~~p~~V~~v~i~~d~ 231 (615)
..|.|=||+|.-.|.+ .-+++.-.+|.+.|.++ |+|..+.++.|.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~ 60 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ 60 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc
Confidence 4588999999988743 22222336688889887 578777776654
No 237
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.69 E-value=1.9e+02 Score=22.92 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=28.8
Q ss_pred CccceEEEecCCCCC---CCCChHHHHHHHHHHhCCCCcceEEEec
Q 007153 187 PQQFAVLVRDLPDLP---KGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (615)
Q Consensus 187 ~~~~TVlV~~iP~~~---~~~~~~~~l~~~f~~~~p~~V~~v~i~~ 229 (615)
...+.+.|+-.++.- .....+++|+++|+++ |.|.++.++.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~ 51 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSS 51 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEES
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEcc
Confidence 457788888655421 1112389999999998 6799988873
No 238
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=20.50 E-value=1e+02 Score=24.84 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.0
Q ss_pred CceEEEEeCCHHHHHHHHHHhc
Q 007153 313 LGAALVFFTSRVAAASAAQSLH 334 (615)
Q Consensus 313 ~~~AFVtF~s~~~a~~a~q~~~ 334 (615)
-.+|||+|+++..|+.|..+..
T Consensus 49 DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 49 DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEecCHHHHHHHHHhcc
Confidence 3689999999999999888654
No 239
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.33 E-value=2.2e+02 Score=21.22 Aligned_cols=44 Identities=14% Similarity=0.379 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccccCccCCCCccccHHHHHHHHHHHHHHHHHHHH
Q 007153 235 NKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQ 304 (615)
Q Consensus 235 ~~l~~~r~~~~~~Le~~~~~~~~~~~~~~~~~~rP~~~~~~~~~~g~kvdai~~~~~~l~~l~~~I~~~~ 304 (615)
+-|.+++..+..-++.|.. ..|.|.++-+++.+++|++++.+.+
T Consensus 23 dPL~EQ~~~I~~yI~qAk~--------------------------~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKA--------------------------AGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHH--------------------------TTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHH--------------------------hcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777766666666542 1356778888899999999988765
Done!