BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007155
         (615 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NWA|A Chain A, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
           Mutant, Low-Ph
 pdb|3NWA|B Chain B, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
           Mutant, Low-Ph
 pdb|3NWA|C Chain C, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
           Mutant, Low-Ph
 pdb|3NWA|D Chain D, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
           Mutant, Low-Ph
          Length = 703

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 11/57 (19%)

Query: 558 EELIVQGVRFAFRVHQFAGGFDVETMRAFQELRDKARSCHIQCQNQHQQKLVCRSTA 614
           +++ V  VRF  R  QF G F+      F+E+ DK  +           K VCRSTA
Sbjct: 139 KDVTVSQVRFGHRYSQFMGIFEDRAPVPFEEVIDKINA-----------KGVCRSTA 184


>pdb|1WK0|A Chain A, Solution Structure Of Fibronectin Type Iii Domain Derived
           From Human Kiaa0970 Protein
          Length = 137

 Score = 30.0 bits (66), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 527 SQIKLASVKLAMKYMKRVSAELETVGGSPEEEEL 560
           + I L  +K AM Y  +V AE  ++ G+P E E+
Sbjct: 82  TNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEI 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,272,650
Number of Sequences: 62578
Number of extensions: 401629
Number of successful extensions: 810
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 2
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)