BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007155
         (615 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
           SV=1
          Length = 1004

 Score =  332 bits (852), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 165/274 (60%), Positives = 206/274 (75%), Gaps = 17/274 (6%)

Query: 333 KVRRIPEVVEFYHSLMRRDSRRD-------SGAGQSEVLPATSNARD-MIGEIENRSAHL 384
           KV R PE+VEFY SLM+R+S+++       SG G S      S AR+ MIGEIENRS  L
Sbjct: 717 KVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNS------SAARNNMIGEIENRSTFL 770

Query: 385 LAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPE 444
           LA+K DVETQGDF++ L  EV +++FTDIED++ FV WLD+ELS+LVDERAVLKHFDWPE
Sbjct: 771 LAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPE 830

Query: 445 QKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRE 504
            KADALREAAF Y DL K+E + +SF DD    C  A KKM  LLEK+E  VY L R R+
Sbjct: 831 GKADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRD 890

Query: 505 SATKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETVGGS---PEEEELI 561
            A  RY+ F IP+DW+ +TG+V +IKL+SV+LA KYMKRV+ EL++V GS   P  E L+
Sbjct: 891 MAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLL 950

Query: 562 VQGVRFAFRVHQFAGGFDVETMRAFQELRDKARS 595
           +QGVRFAFRVHQFAGGFD E+M+AF+ELR +A++
Sbjct: 951 LQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKT 984



 Score = 45.8 bits (107), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 6/92 (6%)

Query: 72  LLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCEN 131
           L +LV+EL ERE  L+ EL+E+  +K   + +  L+ ++  K  E+++    I SLQ E 
Sbjct: 134 LKQLVKELEEREVKLEGELLEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAER 193

Query: 132 ERLKEMLEQN---KRERE---KKMKEMEQEIE 157
           ++L+E L QN   ++E E    K+KE++++I+
Sbjct: 194 KKLQEELSQNGIVRKELEVARNKIKELQRQIQ 225


>sp|Q3TVA9|CC136_MOUSE Coiled-coil domain-containing protein 136 OS=Mus musculus
           GN=Ccdc136 PE=2 SV=2
          Length = 1136

 Score = 38.1 bits (87), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 37/250 (14%)

Query: 70  AELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQC 129
           A++L+LV EL E   L      +H+    S  +  +LE E  A   + E+  K+I+ LQ 
Sbjct: 61  AQVLQLVAELEETRELAG----QHE--DDSLELQGLLEDERLASAQQAEVFTKQIQQLQG 114

Query: 130 ENERLKEMLEQNKREREKKMKEMEQ-------EIEELKKAASERSKVAELSIES------ 176
           E + L+E +   + E+E ++KEMEQ       EI+ L++AA++ +   E  I S      
Sbjct: 115 ELQHLREEISLLEHEKESELKEMEQELHLAQAEIQNLRQAAADSATEHESDIASLQDDLC 174

Query: 177 ---DELSSSQRFQGLVEVSVKSNLIK-NLKRAKSSDGVISSLSSDTPNHNHKLERQDSKR 232
              ++L   +R +G  E+ + S   +  LK ++ S+  IS  S      +H  ER +   
Sbjct: 175 RLQNDLDDMERIRGDYEMEIASLRAEMELKTSEPSNLSISDFSGIQDELHHLRERYNLLN 234

Query: 233 EEPEGERPRHSRCNSE--ELAFSFSFDSTQASLRSRVPRVPNPPPKPSSSSSLPADNKLS 290
           EE +  R  +S    +  EL    +  +T+  L S + R        S+ SS    ++L 
Sbjct: 235 EEYQALRESNSSLTGQLAELESDRTRRATERWLESHLLR--------STMSSESQTSELD 286

Query: 291 AGKQFPPPPP 300
               FP P P
Sbjct: 287 ----FPEPDP 292


>sp|Q93W28|Y4554_ARATH Uncharacterized protein At4g15545 OS=Arabidopsis thaliana
           GN=At4g15545 PE=1 SV=1
          Length = 337

 Score = 35.0 bits (79), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 32/211 (15%)

Query: 104 PVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163
           P  + ++A K T + LS  ++ +L+ E+  L+E+L     E+EK+ +E++  +E L+ + 
Sbjct: 36  PFEQLDVARKITSIALS-TRVSALESESSDLRELLA----EKEKEFEELQSHVESLEASL 90

Query: 164 SERSKVAELSIESDELSSSQRFQGLVEVSVKSNLIKNLKRAKSS-----DGVISSLSSDT 218
           S+     +LS     L+  ++   + E +  SN +K L+R  S        ++ SL  D 
Sbjct: 91  SD--AFHKLS-----LADGEKENLIRENASLSNTVKRLQRDVSKLEGFRKTLMMSLQDD- 142

Query: 219 PNHNHKLERQDSKREEPEGERP----RHSRCNSEELAFSFSFDSTQASLRSRVPRVPNPP 274
            + N    +  +K    + + P    RHS   S++ + +    +T            N  
Sbjct: 143 -DQNAGTTQIIAKPTPNDDDTPFQPSRHSSIQSQQASEAIEPAATDNE---------NDA 192

Query: 275 PKPSSSSSLPADNKLSAGKQFPPPPPPPPSA 305
           PKPS S+SLP  ++ +  +  PP  PP  SA
Sbjct: 193 PKPSLSASLPLVSQTTTPRLTPPGSPPILSA 223


>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1
            SV=2
          Length = 2057

 Score = 33.9 bits (76), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 24/203 (11%)

Query: 69   VAELLRLVEELRERESLLK------TELVEHKLVKASAAIVPV--LESEIAAKNTELELS 120
            +AE+ R   EL+E+ + L+      T  +E   +KASAA+     +ES++      LE  
Sbjct: 1352 LAEIERARSELQEKCTKLQQEAENITNQLEEAELKASAAVKSASNMESQLTEAQQLLEEE 1411

Query: 121  FK-------KIESLQCENERLKEMLEQN---KREREKKMKEMEQEIEELKKAASERSKVA 170
             +       K+  ++ E E L+E LE++   KR  E+K+ E+  +++E+KK A E + +A
Sbjct: 1412 TRQKLGLSSKLRQIESEKEALQEQLEEDDEAKRNYERKLAEVTTQMQEIKKKAEEDADLA 1471

Query: 171  ELSIESDELSSSQRFQGLVEVSVKSNLIKNLKRAKSSDGVISSLSSDTPNHNHKLERQDS 230
            +  +E  +   ++  + L E  VK  + +N +  KS   + S L   T     +LE Q +
Sbjct: 1472 K-ELEEGKKRLNKDIEAL-ERQVKELIAQNDRLDKSKKKIQSELEDATI----ELEAQRT 1525

Query: 231  KREEPEGERPRHSRCNSEELAFS 253
            K  E E ++    +  +EE A S
Sbjct: 1526 KVLELEKKQKNFDKILAEEKAIS 1548


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.129    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,276,378
Number of Sequences: 539616
Number of extensions: 11145432
Number of successful extensions: 221710
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1906
Number of HSP's successfully gapped in prelim test: 3938
Number of HSP's that attempted gapping in prelim test: 100695
Number of HSP's gapped (non-prelim): 61217
length of query: 615
length of database: 191,569,459
effective HSP length: 124
effective length of query: 491
effective length of database: 124,657,075
effective search space: 61206623825
effective search space used: 61206623825
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)