Query 007155
Match_columns 615
No_of_seqs 421 out of 536
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 99.9 4.6E-21 9.9E-26 213.4 26.4 100 364-464 649-765 (1102)
2 KOG1924 RhoA GTPase effector D 98.6 1.1E-07 2.4E-12 108.1 8.0 49 72-124 315-363 (1102)
3 KOG1923 Rac1 GTPase effector F 98.5 1.1E-05 2.4E-10 92.3 21.1 93 69-165 161-253 (830)
4 KOG3671 Actin regulatory prote 97.0 0.0041 8.8E-08 69.1 10.1 13 366-378 491-503 (569)
5 KOG1923 Rac1 GTPase effector F 96.0 0.18 3.9E-06 59.1 15.9 15 148-162 190-204 (830)
6 KOG3671 Actin regulatory prote 95.3 0.12 2.7E-06 57.8 11.0 9 210-218 303-311 (569)
7 KOG1830 Wiskott Aldrich syndro 94.9 0.37 7.9E-06 53.3 12.8 16 364-379 450-465 (518)
8 PF05308 Mito_fiss_reg: Mitoch 94.5 0.49 1.1E-05 49.4 12.2 25 141-165 116-140 (253)
9 PF15290 Syntaphilin: Golgi-lo 94.2 1.3 2.9E-05 46.8 14.6 58 96-157 77-134 (305)
10 PHA03247 large tegument protei 94.0 0.36 7.8E-06 62.8 11.7 26 485-510 3111-3136(3151)
11 PHA01732 proline-rich protein 94.0 0.057 1.2E-06 47.6 3.5 9 337-345 44-52 (94)
12 PHA03247 large tegument protei 93.4 0.42 9.2E-06 62.2 10.9 15 43-57 2320-2334(3151)
13 KOG1925 Rac1 GTPase effector F 93.1 0.32 6.9E-06 54.8 8.2 17 46-62 109-127 (817)
14 PF10226 DUF2216: Uncharacteri 91.5 9 0.0002 38.6 15.3 62 102-163 42-131 (195)
15 COG5178 PRP8 U5 snRNP spliceos 91.5 0.13 2.8E-06 62.2 3.0 14 561-574 267-280 (2365)
16 PRK10884 SH3 domain-containing 91.0 3.2 7E-05 42.1 12.0 64 74-139 93-156 (206)
17 KOG2391 Vacuolar sorting prote 90.7 7.4 0.00016 42.4 14.8 18 413-430 241-258 (365)
18 PF08317 Spc7: Spc7 kinetochor 88.5 5.1 0.00011 43.0 11.9 55 105-163 213-267 (325)
19 PRK09752 adhesin; Provisional 88.0 0.41 8.9E-06 58.7 3.5 7 509-515 1103-1109(1250)
20 PF13851 GAS: Growth-arrest sp 87.2 15 0.00032 37.1 13.6 90 73-165 68-161 (201)
21 KOG1853 LIS1-interacting prote 85.5 11 0.00025 39.6 11.8 82 79-162 25-106 (333)
22 PRK11637 AmiB activator; Provi 84.8 15 0.00032 40.7 13.4 91 72-162 45-136 (428)
23 KOG4590 Signal transduction pr 84.2 2.2 4.7E-05 47.5 6.4 15 369-383 258-272 (409)
24 COG1579 Zn-ribbon protein, pos 81.8 38 0.00082 35.4 13.9 33 107-139 88-120 (239)
25 PF12718 Tropomyosin_1: Tropom 81.8 32 0.0007 33.0 12.6 22 102-123 43-64 (143)
26 KOG0162 Myosin class I heavy c 81.4 8 0.00017 45.9 9.6 11 67-77 681-691 (1106)
27 PF03276 Gag_spuma: Spumavirus 81.2 38 0.00081 39.2 14.6 15 509-527 372-386 (582)
28 COG2433 Uncharacterized conser 80.8 19 0.00042 42.0 12.4 33 128-164 480-512 (652)
29 KOG1830 Wiskott Aldrich syndro 80.7 59 0.0013 36.7 15.5 9 451-459 495-503 (518)
30 KOG3997 Major apurinic/apyrimi 80.6 3.6 7.8E-05 42.5 5.9 86 507-592 96-202 (281)
31 PF07888 CALCOCO1: Calcium bin 80.2 24 0.00053 40.8 13.0 62 102-163 172-236 (546)
32 smart00787 Spc7 Spc7 kinetocho 80.0 24 0.00053 38.0 12.3 14 148-161 247-260 (312)
33 KOG4672 Uncharacterized conser 79.3 6.6 0.00014 43.7 7.8 24 364-387 417-440 (487)
34 PF04156 IncA: IncA protein; 79.1 58 0.0013 31.7 13.8 24 112-135 127-150 (191)
35 KOG1853 LIS1-interacting prote 78.8 30 0.00065 36.6 11.9 62 99-160 89-160 (333)
36 KOG0971 Microtubule-associated 78.6 71 0.0015 39.2 16.2 27 66-92 223-249 (1243)
37 KOG1922 Rho GTPase effector BN 78.0 9.6 0.00021 45.8 9.5 10 337-346 393-402 (833)
38 KOG0963 Transcription factor/C 77.6 28 0.0006 40.8 12.4 92 70-164 245-345 (629)
39 PF12325 TMF_TATA_bd: TATA ele 77.6 63 0.0014 30.3 14.0 100 60-163 8-112 (120)
40 PRK11637 AmiB activator; Provi 77.0 30 0.00065 38.4 12.3 16 77-92 43-58 (428)
41 KOG1925 Rac1 GTPase effector F 76.9 2.4 5.1E-05 48.2 3.6 31 483-513 583-613 (817)
42 PF10267 Tmemb_cc2: Predicted 76.5 1E+02 0.0022 34.6 16.0 18 136-153 301-318 (395)
43 KOG1029 Endocytic adaptor prot 76.1 21 0.00046 42.8 11.0 12 570-581 1058-1069(1118)
44 KOG2675 Adenylate cyclase-asso 75.7 3 6.6E-05 46.6 4.1 11 509-519 453-463 (480)
45 PRK10884 SH3 domain-containing 75.7 32 0.00068 35.1 11.1 15 76-90 102-116 (206)
46 PF00038 Filament: Intermediat 74.9 58 0.0013 34.1 13.3 59 107-165 222-280 (312)
47 PF07889 DUF1664: Protein of u 74.3 56 0.0012 31.0 11.6 78 78-161 47-124 (126)
48 PRK12704 phosphodiesterase; Pr 74.1 61 0.0013 37.4 14.1 15 579-593 481-495 (520)
49 KOG0804 Cytoplasmic Zn-finger 74.1 56 0.0012 37.1 13.2 29 134-162 415-443 (493)
50 TIGR03319 YmdA_YtgF conserved 73.2 67 0.0014 37.0 14.1 15 579-593 475-489 (514)
51 COG1579 Zn-ribbon protein, pos 72.2 70 0.0015 33.5 12.7 10 77-86 55-64 (239)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 72.2 87 0.0019 29.3 14.3 50 114-163 65-114 (132)
53 PF06156 DUF972: Protein of un 72.1 18 0.00039 33.2 7.6 42 98-139 5-46 (107)
54 KOG2675 Adenylate cyclase-asso 71.2 3.8 8.2E-05 45.8 3.5 15 65-79 46-60 (480)
55 KOG0980 Actin-binding protein 71.1 69 0.0015 39.1 13.7 71 69-139 353-448 (980)
56 PF05266 DUF724: Protein of un 71.0 49 0.0011 33.3 11.0 36 102-137 111-146 (190)
57 PF00261 Tropomyosin: Tropomyo 70.1 76 0.0016 32.6 12.5 32 104-135 123-154 (237)
58 PRK00106 hypothetical protein; 69.3 93 0.002 36.2 14.1 15 579-593 496-510 (535)
59 PF04156 IncA: IncA protein; 69.2 1.2E+02 0.0025 29.6 13.6 19 74-92 81-99 (191)
60 PF08317 Spc7: Spc7 kinetochor 68.3 34 0.00073 36.8 9.9 16 150-165 279-294 (325)
61 PF09726 Macoilin: Transmembra 68.0 64 0.0014 38.6 12.8 19 121-139 544-562 (697)
62 KOG4005 Transcription factor X 67.6 1.7E+02 0.0037 30.9 14.1 31 102-132 91-121 (292)
63 PF09738 DUF2051: Double stran 67.4 1.4E+02 0.0029 32.4 14.0 52 97-148 94-145 (302)
64 KOG2196 Nuclear porin [Nuclear 67.2 24 0.00051 37.0 7.9 125 387-513 118-252 (254)
65 TIGR03185 DNA_S_dndD DNA sulfu 66.9 52 0.0011 38.6 11.8 66 99-164 207-279 (650)
66 KOG0250 DNA repair protein RAD 66.9 66 0.0014 40.1 12.7 54 465-519 804-861 (1074)
67 PF07798 DUF1640: Protein of u 66.9 99 0.0022 30.4 12.1 15 149-163 122-136 (177)
68 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.6 1.1E+02 0.0025 28.5 14.0 66 98-163 56-121 (132)
69 PF13851 GAS: Growth-arrest sp 66.5 90 0.0019 31.6 11.9 40 79-120 7-46 (201)
70 PF08581 Tup_N: Tup N-terminal 66.3 89 0.0019 27.4 10.2 36 104-139 28-63 (79)
71 KOG0994 Extracellular matrix g 66.3 2E+02 0.0043 36.6 16.2 131 395-534 1491-1636(1758)
72 PF12325 TMF_TATA_bd: TATA ele 65.5 1.1E+02 0.0023 28.9 11.3 39 101-139 68-106 (120)
73 PF04849 HAP1_N: HAP1 N-termin 65.4 1.2E+02 0.0025 33.0 13.0 28 67-94 160-187 (306)
74 PF10267 Tmemb_cc2: Predicted 65.0 1.3E+02 0.0029 33.7 13.8 69 69-139 214-286 (395)
75 COG1842 PspA Phage shock prote 65.0 82 0.0018 32.6 11.4 45 95-139 86-130 (225)
76 PF11932 DUF3450: Protein of u 64.5 1.7E+02 0.0036 30.2 13.7 55 107-161 62-116 (251)
77 PRK13169 DNA replication intia 64.3 31 0.00068 32.0 7.5 42 98-139 5-46 (110)
78 PF05278 PEARLI-4: Arabidopsis 63.7 1.1E+02 0.0024 32.6 12.3 8 84-91 169-176 (269)
79 KOG0977 Nuclear envelope prote 63.3 1.1E+02 0.0023 35.8 13.0 62 103-164 150-214 (546)
80 PF07106 TBPIP: Tat binding pr 61.8 49 0.0011 32.0 8.8 12 76-87 81-92 (169)
81 PF10473 CENP-F_leu_zip: Leuci 61.8 1.6E+02 0.0034 28.5 12.3 25 114-138 51-75 (140)
82 PF10146 zf-C4H2: Zinc finger- 61.5 2.1E+02 0.0045 29.8 13.8 40 76-118 10-49 (230)
83 KOG0977 Nuclear envelope prote 61.2 1.5E+02 0.0033 34.5 13.7 81 80-166 41-132 (546)
84 KOG0980 Actin-binding protein 61.1 1.3E+02 0.0028 37.0 13.3 28 509-543 827-854 (980)
85 PF00261 Tropomyosin: Tropomyo 60.8 1.6E+02 0.0034 30.2 12.7 62 102-163 142-213 (237)
86 PF00846 Hanta_nucleocap: Hant 59.9 52 0.0011 36.7 9.3 39 143-181 52-91 (428)
87 PF14988 DUF4515: Domain of un 59.8 1.5E+02 0.0033 30.1 12.2 49 77-127 25-73 (206)
88 KOG2264 Exostosin EXT1L [Signa 59.8 61 0.0013 37.9 10.1 67 68-140 73-139 (907)
89 PF12329 TMF_DNA_bd: TATA elem 59.3 90 0.002 26.8 8.9 19 72-90 3-21 (74)
90 PHA02562 46 endonuclease subun 59.3 1.6E+02 0.0034 33.4 13.5 35 102-136 338-372 (562)
91 PRK10361 DNA recombination pro 58.4 1.9E+02 0.0041 33.3 13.7 49 105-153 57-105 (475)
92 PF15290 Syntaphilin: Golgi-lo 58.2 2.6E+02 0.0057 30.2 13.7 37 27-64 17-54 (305)
93 PRK09039 hypothetical protein; 58.2 1.6E+02 0.0036 32.1 12.9 8 335-342 291-298 (343)
94 COG4942 Membrane-bound metallo 58.2 1.8E+02 0.0038 33.0 13.2 84 74-163 38-128 (420)
95 smart00787 Spc7 Spc7 kinetocho 57.8 1.9E+02 0.0041 31.4 13.1 13 87-99 125-137 (312)
96 COG3883 Uncharacterized protei 57.7 73 0.0016 33.9 9.7 56 107-166 51-106 (265)
97 PF10186 Atg14: UV radiation r 57.1 2.2E+02 0.0048 29.1 13.2 37 102-138 71-107 (302)
98 PF15294 Leu_zip: Leucine zipp 56.9 2.8E+02 0.0061 29.8 13.9 70 44-115 101-174 (278)
99 PF10234 Cluap1: Clusterin-ass 56.8 2.1E+02 0.0045 30.6 12.9 59 104-162 193-261 (267)
100 PF10146 zf-C4H2: Zinc finger- 56.7 2.5E+02 0.0054 29.2 16.6 11 152-162 93-103 (230)
101 PF11068 YlqD: YlqD protein; 56.7 1E+02 0.0022 29.5 9.6 63 101-163 27-90 (131)
102 PF12072 DUF3552: Domain of un 56.0 2.3E+02 0.0049 28.5 14.1 13 106-118 69-81 (201)
103 PF05377 FlaC_arch: Flagella a 56.0 33 0.00072 28.2 5.4 30 103-132 2-31 (55)
104 PF10168 Nup88: Nuclear pore c 55.9 1.6E+02 0.0034 35.5 13.2 18 65-82 533-551 (717)
105 PF14662 CCDC155: Coiled-coil 55.7 2.4E+02 0.0053 28.8 13.7 22 71-92 5-26 (193)
106 PF09304 Cortex-I_coil: Cortex 55.5 1.1E+02 0.0024 28.4 9.3 17 76-92 11-27 (107)
107 COG4026 Uncharacterized protei 55.5 89 0.0019 32.7 9.6 29 111-139 159-187 (290)
108 PHA02562 46 endonuclease subun 54.9 1.7E+02 0.0038 33.0 13.0 64 75-141 307-370 (562)
109 PF10186 Atg14: UV radiation r 54.7 2.5E+02 0.0055 28.7 13.7 47 105-151 60-106 (302)
110 PRK09039 hypothetical protein; 54.6 2.5E+02 0.0054 30.7 13.5 16 123-138 145-160 (343)
111 PF11932 DUF3450: Protein of u 54.6 1.6E+02 0.0034 30.4 11.6 28 105-132 53-80 (251)
112 PF10473 CENP-F_leu_zip: Leuci 54.5 2.1E+02 0.0046 27.7 12.6 8 76-83 26-33 (140)
113 PF06785 UPF0242: Uncharacteri 54.2 1.8E+02 0.004 32.1 12.0 30 490-526 351-383 (401)
114 PRK15422 septal ring assembly 53.8 1E+02 0.0022 27.3 8.2 34 104-137 7-40 (79)
115 COG3883 Uncharacterized protei 53.7 1.6E+02 0.0034 31.5 11.3 62 102-163 53-114 (265)
116 PF08006 DUF1700: Protein of u 53.6 17 0.00038 35.4 4.2 59 394-452 3-62 (181)
117 PF09726 Macoilin: Transmembra 53.5 91 0.002 37.4 10.7 82 78-163 422-504 (697)
118 PF15070 GOLGA2L5: Putative go 53.4 1.8E+02 0.0039 34.5 12.9 23 141-163 116-138 (617)
119 PRK15313 autotransport protein 53.3 25 0.00054 43.1 6.1 7 508-514 795-801 (955)
120 KOG2129 Uncharacterized conser 53.0 4E+02 0.0086 30.4 17.2 33 70-104 249-281 (552)
121 PF04880 NUDE_C: NUDE protein, 52.8 19 0.00041 35.7 4.2 39 96-138 9-47 (166)
122 PF08614 ATG16: Autophagy prot 52.6 96 0.0021 30.8 9.3 22 69-90 83-104 (194)
123 KOG0804 Cytoplasmic Zn-finger 52.6 2E+02 0.0043 32.9 12.4 38 102-139 362-399 (493)
124 TIGR02894 DNA_bind_RsfA transc 52.6 87 0.0019 31.0 8.7 42 107-148 103-144 (161)
125 KOG0243 Kinesin-like protein [ 52.5 1.3E+02 0.0029 37.5 11.9 27 99-125 446-472 (1041)
126 PF09730 BicD: Microtubule-ass 52.2 2.1E+02 0.0046 34.5 13.3 99 74-173 69-180 (717)
127 PF15254 CCDC14: Coiled-coil d 52.2 1.6E+02 0.0034 35.8 12.0 100 69-168 395-508 (861)
128 KOG4672 Uncharacterized conser 51.8 1.1E+02 0.0024 34.5 10.2 20 330-349 413-432 (487)
129 TIGR00606 rad50 rad50. This fa 51.5 1.7E+02 0.0038 37.3 13.4 40 100-139 880-919 (1311)
130 PF11559 ADIP: Afadin- and alp 51.5 2.2E+02 0.0047 27.0 11.5 36 102-137 60-95 (151)
131 KOG0250 DNA repair protein RAD 51.3 1.7E+02 0.0037 36.7 12.5 15 6-20 608-622 (1074)
132 KOG4360 Uncharacterized coiled 51.2 2.5E+02 0.0054 32.7 13.0 43 141-183 276-318 (596)
133 CHL00172 cpeB phycoerythrin be 51.1 62 0.0013 32.5 7.5 27 396-422 7-33 (177)
134 PF06992 Phage_lambda_P: Repli 51.0 54 0.0012 34.2 7.4 89 337-426 5-113 (233)
135 PF07888 CALCOCO1: Calcium bin 51.0 2.9E+02 0.0063 32.4 13.8 15 538-552 444-458 (546)
136 PRK02224 chromosome segregatio 50.8 2.5E+02 0.0054 33.9 14.0 11 576-586 822-832 (880)
137 KOG0933 Structural maintenance 50.8 1.9E+02 0.0042 36.1 12.7 17 583-599 1107-1123(1174)
138 PF06632 XRCC4: DNA double-str 50.6 1.9E+02 0.004 31.9 11.7 55 106-163 156-210 (342)
139 PF00038 Filament: Intermediat 50.4 3.2E+02 0.007 28.6 13.9 41 122-162 262-305 (312)
140 PF04859 DUF641: Plant protein 50.4 54 0.0012 31.3 6.7 29 105-133 98-126 (131)
141 PRK02224 chromosome segregatio 50.2 2.7E+02 0.0059 33.6 14.2 13 149-161 574-586 (880)
142 KOG0971 Microtubule-associated 49.9 1.6E+02 0.0034 36.5 11.6 17 414-430 840-856 (1243)
143 COG2433 Uncharacterized conser 49.7 2.5E+02 0.0054 33.4 12.9 34 105-138 433-466 (652)
144 PLN02372 violaxanthin de-epoxi 49.4 2.3E+02 0.0051 32.1 12.2 21 95-115 377-397 (455)
145 KOG2129 Uncharacterized conser 48.9 1.7E+02 0.0037 33.2 11.0 15 413-427 518-532 (552)
146 PF00769 ERM: Ezrin/radixin/mo 48.9 2.9E+02 0.0063 28.8 12.4 67 97-163 29-98 (246)
147 PF04912 Dynamitin: Dynamitin 48.9 1.7E+02 0.0037 32.2 11.4 31 110-140 331-361 (388)
148 PF15397 DUF4618: Domain of un 48.8 2.5E+02 0.0054 29.9 11.9 90 71-165 10-99 (258)
149 PF12128 DUF3584: Protein of u 48.8 2.7E+02 0.0059 35.4 14.4 38 457-494 1045-1085(1201)
150 PF15070 GOLGA2L5: Putative go 48.7 2.1E+02 0.0045 34.0 12.5 28 65-92 78-105 (617)
151 KOG0999 Microtubule-associated 48.6 2.7E+02 0.006 32.8 12.9 29 99-127 105-133 (772)
152 KOG0162 Myosin class I heavy c 48.6 97 0.0021 37.4 9.6 7 59-65 797-803 (1106)
153 PF15066 CAGE1: Cancer-associa 48.4 3E+02 0.0065 31.7 13.0 18 105-122 450-467 (527)
154 PF06810 Phage_GP20: Phage min 48.4 1.5E+02 0.0033 28.8 9.7 58 102-163 28-85 (155)
155 PRK00106 hypothetical protein; 48.1 3.5E+02 0.0076 31.6 14.0 15 534-548 500-514 (535)
156 smart00498 FH2 Formin Homology 47.2 36 0.00078 37.9 5.9 52 412-464 95-147 (432)
157 PF10168 Nup88: Nuclear pore c 47.1 2.5E+02 0.0054 33.9 13.0 68 72-139 534-603 (717)
158 PF05308 Mito_fiss_reg: Mitoch 47.0 29 0.00064 36.4 4.8 12 367-378 237-248 (253)
159 KOG0996 Structural maintenance 46.8 4.8E+02 0.01 33.4 15.3 64 97-160 809-878 (1293)
160 KOG0559 Dihydrolipoamide succi 46.8 78 0.0017 35.2 8.0 9 535-543 421-429 (457)
161 PF08172 CASP_C: CASP C termin 46.6 1.4E+02 0.0031 31.3 9.8 26 114-139 85-110 (248)
162 PRK11546 zraP zinc resistance 45.9 1.2E+02 0.0026 29.4 8.4 24 97-120 57-80 (143)
163 PF07106 TBPIP: Tat binding pr 45.8 98 0.0021 29.9 8.0 12 149-160 118-129 (169)
164 PRK03918 chromosome segregatio 45.8 2.8E+02 0.0061 33.3 13.4 14 576-589 823-836 (880)
165 PF02403 Seryl_tRNA_N: Seryl-t 45.4 2.2E+02 0.0048 25.3 10.0 65 100-164 28-98 (108)
166 TIGR02231 conserved hypothetic 45.0 2E+02 0.0043 32.9 11.4 27 66-92 70-96 (525)
167 KOG2211 Predicted Golgi transp 44.9 1.5E+02 0.0032 35.6 10.2 45 336-384 398-442 (797)
168 PF15397 DUF4618: Domain of un 44.7 4E+02 0.0086 28.4 12.6 18 102-119 82-99 (258)
169 KOG0933 Structural maintenance 44.6 3E+02 0.0065 34.6 13.0 42 95-139 763-804 (1174)
170 PF05278 PEARLI-4: Arabidopsis 44.6 3E+02 0.0066 29.4 11.8 10 97-106 152-161 (269)
171 KOG1850 Myosin-like coiled-coi 44.2 4.8E+02 0.01 28.8 14.9 46 76-127 210-255 (391)
172 PF07544 Med9: RNA polymerase 43.9 82 0.0018 27.5 6.4 44 78-124 25-68 (83)
173 PF15003 HAUS2: HAUS augmin-li 43.8 4.4E+02 0.0095 28.4 12.8 61 447-508 136-199 (277)
174 PF08172 CASP_C: CASP C termin 43.7 64 0.0014 33.8 6.7 38 102-139 94-131 (248)
175 PF03276 Gag_spuma: Spumavirus 43.5 4.8E+02 0.01 30.7 13.8 10 266-275 215-225 (582)
176 PF09755 DUF2046: Uncharacteri 43.4 4.8E+02 0.01 28.6 13.5 14 149-162 180-193 (310)
177 PF03962 Mnd1: Mnd1 family; I 43.2 2.6E+02 0.0057 28.0 10.7 28 65-92 60-87 (188)
178 PRK07764 DNA polymerase III su 43.1 7.3E+02 0.016 30.6 19.2 10 336-345 515-524 (824)
179 PF11221 Med21: Subunit 21 of 43.0 1.4E+02 0.0031 28.5 8.5 10 109-118 77-86 (144)
180 PF06160 EzrA: Septation ring 42.9 3.2E+02 0.0069 31.8 12.8 46 76-123 138-183 (560)
181 cd07596 BAR_SNX The Bin/Amphip 42.9 3.2E+02 0.0069 26.4 11.3 101 413-531 6-107 (218)
182 PF09730 BicD: Microtubule-ass 42.8 3.5E+02 0.0076 32.8 13.2 71 69-139 29-114 (717)
183 PF09278 MerR-DNA-bind: MerR, 42.7 72 0.0016 25.6 5.6 58 447-505 4-61 (65)
184 COG1196 Smc Chromosome segrega 42.5 3.7E+02 0.0081 34.0 14.2 24 576-599 962-985 (1163)
185 PF14662 CCDC155: Coiled-coil 42.5 3.9E+02 0.0085 27.3 13.4 26 114-139 66-91 (193)
186 COG3352 FlaC Putative archaeal 42.4 2.8E+02 0.006 27.4 10.2 57 61-117 37-95 (157)
187 KOG0976 Rho/Rac1-interacting s 42.2 3.1E+02 0.0066 33.8 12.3 61 103-163 94-161 (1265)
188 PF12072 DUF3552: Domain of un 42.0 3.7E+02 0.0081 26.9 12.4 59 102-160 79-137 (201)
189 KOG3850 Predicted membrane pro 41.8 5.7E+02 0.012 29.0 15.5 25 136-160 349-373 (455)
190 TIGR00606 rad50 rad50. This fa 41.6 3.1E+02 0.0067 35.2 13.4 13 576-588 1234-1246(1311)
191 KOG4657 Uncharacterized conser 41.5 4.2E+02 0.0092 27.9 11.9 38 102-139 87-124 (246)
192 PF08657 DASH_Spc34: DASH comp 41.0 1.8E+02 0.004 30.7 9.6 36 79-120 178-213 (259)
193 PF05518 Totivirus_coat: Totiv 41.0 59 0.0013 39.0 6.5 12 59-70 501-513 (759)
194 PF09789 DUF2353: Uncharacteri 41.0 2.5E+02 0.0053 30.8 10.7 29 111-139 129-157 (319)
195 PF04949 Transcrip_act: Transc 40.6 3.7E+02 0.0081 26.5 12.2 33 113-145 82-114 (159)
196 KOG3859 Septins (P-loop GTPase 40.5 3.5E+02 0.0076 29.6 11.5 70 76-164 332-401 (406)
197 PF13870 DUF4201: Domain of un 40.2 3.6E+02 0.0078 26.2 12.3 16 74-89 56-71 (177)
198 PF10211 Ax_dynein_light: Axon 39.9 4E+02 0.0087 26.7 13.0 25 115-139 127-151 (189)
199 PRK05658 RNA polymerase sigma 39.8 3.8E+02 0.0082 31.5 12.9 31 501-531 391-421 (619)
200 KOG1962 B-cell receptor-associ 39.5 2.4E+02 0.0053 29.2 9.9 7 154-160 186-192 (216)
201 KOG0996 Structural maintenance 39.5 4E+02 0.0087 34.0 13.1 6 187-192 603-608 (1293)
202 COG4467 Regulator of replicati 39.1 1E+02 0.0022 28.8 6.4 39 97-135 4-42 (114)
203 KOG2077 JNK/SAPK-associated pr 39.0 2E+02 0.0042 34.0 9.9 18 3-20 192-209 (832)
204 KOG0837 Transcriptional activa 38.7 3.1E+02 0.0066 29.4 10.6 46 64-112 193-238 (279)
205 cd00632 Prefoldin_beta Prefold 38.6 2.9E+02 0.0063 24.7 9.9 9 84-92 23-31 (105)
206 PF10212 TTKRSYEDQ: Predicted 38.5 5E+02 0.011 30.3 13.0 57 109-165 449-505 (518)
207 PF12761 End3: Actin cytoskele 38.3 2.5E+02 0.0054 28.7 9.6 28 64-91 93-120 (195)
208 COG1196 Smc Chromosome segrega 38.3 3.8E+02 0.0082 34.0 13.3 40 368-407 966-1005(1163)
209 PRK10803 tol-pal system protei 38.0 1.4E+02 0.003 31.3 8.2 29 105-133 58-86 (263)
210 PF00804 Syntaxin: Syntaxin; 37.9 2.2E+02 0.0048 24.1 8.2 29 134-162 43-71 (103)
211 KOG0249 LAR-interacting protei 37.7 1.8E+02 0.004 35.1 9.6 45 73-121 111-155 (916)
212 KOG0288 WD40 repeat protein Ti 37.6 4.1E+02 0.0089 30.2 11.9 48 76-123 22-70 (459)
213 PF15619 Lebercilin: Ciliary p 37.5 4.5E+02 0.0098 26.6 13.1 20 143-162 135-154 (194)
214 PRK13729 conjugal transfer pil 37.1 90 0.0019 35.8 7.0 23 521-543 361-383 (475)
215 PF07304 SRA1: Steroid recepto 37.1 60 0.0013 31.6 5.0 131 299-438 3-136 (157)
216 COG3074 Uncharacterized protei 37.0 2.8E+02 0.0061 24.1 8.2 21 115-135 25-45 (79)
217 PRK10698 phage shock protein P 36.6 4.9E+02 0.011 26.7 13.2 34 106-139 97-130 (222)
218 KOG0976 Rho/Rac1-interacting s 36.3 3.5E+02 0.0077 33.3 11.6 33 133-165 277-309 (1265)
219 smart00340 HALZ homeobox assoc 36.3 63 0.0014 25.4 3.9 28 112-139 2-29 (44)
220 PF00170 bZIP_1: bZIP transcri 36.2 2.4E+02 0.0051 23.0 8.1 31 102-132 27-57 (64)
221 PF06810 Phage_GP20: Phage min 35.9 1.9E+02 0.0042 28.1 8.2 17 116-132 52-68 (155)
222 KOG0992 Uncharacterized conser 35.8 4.3E+02 0.0093 30.9 11.8 13 367-379 473-485 (613)
223 KOG0993 Rab5 GTPase effector R 35.7 2.4E+02 0.0051 32.1 9.6 10 144-153 173-182 (542)
224 PRK13729 conjugal transfer pil 35.4 1.4E+02 0.003 34.3 8.1 37 480-525 371-407 (475)
225 KOG1922 Rho GTPase effector BN 35.2 34 0.00074 41.2 3.6 37 461-497 666-702 (833)
226 PF09755 DUF2046: Uncharacteri 35.2 6.4E+02 0.014 27.6 14.7 23 70-92 23-45 (310)
227 KOG0999 Microtubule-associated 35.0 4.5E+02 0.0098 31.1 11.9 27 394-420 440-466 (772)
228 PRK12705 hypothetical protein; 35.0 6.7E+02 0.014 29.2 13.5 15 579-593 469-483 (508)
229 KOG0243 Kinesin-like protein [ 34.9 6.1E+02 0.013 32.1 13.7 24 105-128 487-510 (1041)
230 PF10498 IFT57: Intra-flagella 34.9 4.6E+02 0.01 29.0 11.9 20 71-90 217-236 (359)
231 KOG4809 Rab6 GTPase-interactin 34.8 4E+02 0.0086 31.4 11.5 23 480-502 584-606 (654)
232 KOG0995 Centromere-associated 34.8 7.1E+02 0.015 29.4 13.6 65 99-163 458-533 (581)
233 COG1340 Uncharacterized archae 34.3 6E+02 0.013 27.6 12.2 96 61-165 103-211 (294)
234 PF07083 DUF1351: Protein of u 34.1 3.7E+02 0.0081 27.4 10.4 49 476-524 144-195 (215)
235 PF05761 5_nucleotid: 5' nucle 33.9 97 0.0021 35.2 6.6 65 99-164 320-386 (448)
236 KOG4466 Component of histone d 33.8 5.3E+02 0.012 27.9 11.5 15 149-163 118-132 (291)
237 PF03962 Mnd1: Mnd1 family; I 33.6 2.4E+02 0.0051 28.3 8.7 13 149-161 112-124 (188)
238 PF07439 DUF1515: Protein of u 33.6 2.6E+02 0.0056 26.2 8.1 59 104-162 4-62 (112)
239 smart00338 BRLZ basic region l 33.5 2.6E+02 0.0057 22.7 7.6 35 102-136 27-61 (65)
240 KOG4403 Cell surface glycoprot 33.5 1.9E+02 0.0041 33.0 8.5 87 97-192 245-342 (575)
241 PRK04778 septation ring format 33.4 3.6E+02 0.0077 31.4 11.3 20 478-497 535-554 (569)
242 PF04012 PspA_IM30: PspA/IM30 33.2 5.1E+02 0.011 25.9 13.8 31 104-134 94-124 (221)
243 PF09325 Vps5: Vps5 C terminal 33.1 2.7E+02 0.006 27.6 9.2 63 449-519 53-115 (236)
244 KOG1962 B-cell receptor-associ 33.1 5.2E+02 0.011 26.9 11.1 20 129-148 151-170 (216)
245 KOG1850 Myosin-like coiled-coi 33.0 6.5E+02 0.014 27.9 12.1 53 106-158 114-166 (391)
246 COG1392 Phosphate transport re 33.0 5.6E+02 0.012 26.3 11.5 112 411-529 77-196 (217)
247 KOG0995 Centromere-associated 32.9 6.4E+02 0.014 29.8 12.8 57 67-123 258-316 (581)
248 TIGR01338 phycocy_alpha phycoc 32.8 2.7E+02 0.0058 27.6 8.7 26 397-422 7-32 (161)
249 KOG0559 Dihydrolipoamide succi 32.8 1.3E+02 0.0028 33.6 7.0 15 372-386 261-275 (457)
250 PF12777 MT: Microtubule-bindi 32.7 4E+02 0.0087 28.9 10.9 13 572-584 321-333 (344)
251 KOG4460 Nuclear pore complex, 32.7 6.8E+02 0.015 29.7 12.8 20 63-82 554-574 (741)
252 KOG2077 JNK/SAPK-associated pr 32.7 2.4E+02 0.0051 33.4 9.3 40 147-187 357-396 (832)
253 TIGR02449 conserved hypothetic 32.5 3.2E+02 0.0068 23.3 8.7 6 154-159 53-58 (65)
254 PF11500 Cut12: Spindle pole b 32.5 3.7E+02 0.008 26.5 9.4 34 128-165 104-137 (152)
255 TIGR03752 conj_TIGR03752 integ 32.5 2.2E+02 0.0047 32.8 9.0 14 149-162 125-138 (472)
256 PF10083 DUF2321: Uncharacteri 32.3 1.7E+02 0.0038 28.9 7.2 64 435-500 73-142 (158)
257 KOG4337 Microsomal triglycerid 32.3 2.8E+02 0.006 33.4 9.9 104 399-507 335-439 (896)
258 PF05816 TelA: Toxic anion res 32.2 2.7E+02 0.0059 30.1 9.5 34 390-423 43-78 (333)
259 PF03670 UPF0184: Uncharacteri 32.2 2.1E+02 0.0046 25.5 7.0 37 110-146 28-64 (83)
260 TIGR01069 mutS2 MutS2 family p 32.0 3E+02 0.0065 33.5 10.7 6 66-71 495-500 (771)
261 PF10174 Cast: RIM-binding pro 32.0 4.5E+02 0.0097 32.2 12.0 52 105-156 312-363 (775)
262 KOG0964 Structural maintenance 31.8 5.1E+02 0.011 32.6 12.2 122 43-164 127-289 (1200)
263 KOG0241 Kinesin-like protein [ 31.7 1.6E+02 0.0035 36.7 8.1 65 97-161 360-425 (1714)
264 PRK15178 Vi polysaccharide exp 31.5 1.8E+02 0.004 33.0 8.2 41 122-162 286-336 (434)
265 PF08826 DMPK_coil: DMPK coile 31.5 3.1E+02 0.0068 23.0 8.8 21 144-164 36-56 (61)
266 PF05701 WEMBL: Weak chloropla 31.3 7.2E+02 0.016 28.7 13.2 17 103-119 339-355 (522)
267 PF05911 DUF869: Plant protein 31.3 6.2E+02 0.013 31.0 13.0 19 144-162 187-205 (769)
268 TIGR03752 conj_TIGR03752 integ 31.2 2.8E+02 0.0061 31.9 9.6 14 146-159 115-128 (472)
269 PF10458 Val_tRNA-synt_C: Valy 30.8 3E+02 0.0064 22.8 7.5 11 149-159 48-58 (66)
270 PRK04863 mukB cell division pr 30.8 7.8E+02 0.017 32.5 14.4 24 504-528 739-762 (1486)
271 PF03961 DUF342: Protein of un 30.6 2.9E+02 0.0062 31.0 9.7 14 77-90 337-350 (451)
272 TIGR02680 conserved hypothetic 30.5 7.5E+02 0.016 32.1 14.3 14 576-589 1288-1301(1353)
273 PF06785 UPF0242: Uncharacteri 30.5 5.5E+02 0.012 28.6 11.1 23 367-389 282-304 (401)
274 PF06156 DUF972: Protein of un 30.5 2.5E+02 0.0054 25.9 7.6 22 71-92 5-26 (107)
275 KOG4403 Cell surface glycoprot 30.3 6.8E+02 0.015 28.8 12.1 23 107-131 303-325 (575)
276 PRK10361 DNA recombination pro 30.2 8.6E+02 0.019 28.2 13.3 16 442-457 344-359 (475)
277 PF10147 CR6_interact: Growth 30.2 6.2E+02 0.014 26.3 11.1 41 125-165 131-171 (217)
278 PF05701 WEMBL: Weak chloropla 30.1 8.1E+02 0.018 28.3 13.3 18 74-91 172-189 (522)
279 KOG4460 Nuclear pore complex, 29.9 6.3E+02 0.014 29.9 12.0 16 70-85 584-599 (741)
280 PF03915 AIP3: Actin interacti 29.3 8.9E+02 0.019 27.6 13.4 21 72-92 218-238 (424)
281 KOG1656 Protein involved in gl 29.0 6.2E+02 0.013 26.3 10.6 30 44-78 2-31 (221)
282 PF07798 DUF1640: Protein of u 28.9 5.6E+02 0.012 25.1 12.7 12 143-154 123-134 (177)
283 PF05667 DUF812: Protein of un 28.8 3.9E+02 0.0085 31.6 10.6 18 391-408 463-480 (594)
284 PF07307 HEPPP_synt_1: Heptapr 28.6 3E+02 0.0066 28.4 8.6 65 411-485 119-183 (212)
285 PF05667 DUF812: Protein of un 28.6 5E+02 0.011 30.7 11.4 18 391-408 507-524 (594)
286 KOG3119 Basic region leucine z 28.6 3.8E+02 0.0083 28.3 9.6 10 127-136 227-236 (269)
287 PRK01156 chromosome segregatio 28.6 8.8E+02 0.019 29.5 14.0 15 575-589 835-849 (895)
288 PF15619 Lebercilin: Ciliary p 28.6 6.3E+02 0.014 25.6 13.0 25 76-100 14-38 (194)
289 PHA03211 serine/threonine kina 28.5 74 0.0016 35.7 4.6 15 334-348 65-79 (461)
290 PF05529 Bap31: B-cell recepto 28.5 3.6E+02 0.0079 26.5 9.0 11 109-119 126-136 (192)
291 PF02994 Transposase_22: L1 tr 28.4 1.6E+02 0.0034 32.6 7.0 12 410-421 332-343 (370)
292 PF00901 Orbi_VP5: Orbivirus o 28.2 9.3E+02 0.02 28.1 12.9 18 65-82 82-99 (508)
293 PF05700 BCAS2: Breast carcino 28.1 6.6E+02 0.014 25.6 13.2 59 69-127 99-162 (221)
294 PRK10803 tol-pal system protei 27.8 3.1E+02 0.0067 28.8 8.8 20 120-139 59-78 (263)
295 PRK05431 seryl-tRNA synthetase 27.8 3.6E+02 0.0079 30.3 9.8 66 100-165 27-98 (425)
296 PF04625 DEC-1_N: DEC-1 protei 27.8 74 0.0016 34.8 4.1 13 560-572 386-398 (407)
297 KOG0132 RNA polymerase II C-te 27.7 4.3E+02 0.0093 32.4 10.5 6 107-112 435-440 (894)
298 KOG1029 Endocytic adaptor prot 27.5 6.8E+02 0.015 30.9 12.0 27 412-438 487-513 (1118)
299 PF05300 DUF737: Protein of un 27.4 6.7E+02 0.014 25.5 13.8 17 149-165 157-173 (187)
300 PRK00846 hypothetical protein; 27.4 3.8E+02 0.0082 23.5 7.7 17 102-118 14-30 (77)
301 PF04965 GPW_gp25: Gene 25-lik 27.3 62 0.0013 28.2 3.0 58 485-543 3-63 (99)
302 PF10392 COG5: Golgi transport 27.3 5.2E+02 0.011 24.1 12.2 42 114-155 71-112 (132)
303 PF13093 FTA4: Kinetochore com 27.2 5E+02 0.011 26.7 9.9 19 476-494 194-212 (213)
304 TIGR00414 serS seryl-tRNA synt 27.1 5E+02 0.011 29.1 10.7 65 101-165 30-101 (418)
305 KOG0161 Myosin class II heavy 27.0 7E+02 0.015 33.8 13.1 14 560-573 1576-1589(1930)
306 COG1382 GimC Prefoldin, chaper 26.9 5.5E+02 0.012 24.3 12.3 21 66-86 5-25 (119)
307 PF04977 DivIC: Septum formati 26.9 1.9E+02 0.0042 23.8 5.8 28 106-133 22-49 (80)
308 PF13935 Ead_Ea22: Ead/Ea22-li 26.8 4.6E+02 0.0099 24.9 9.0 22 66-87 66-87 (139)
309 PHA03161 hypothetical protein; 26.7 4.7E+02 0.01 25.8 9.0 23 100-122 60-82 (150)
310 KOG2010 Double stranded RNA bi 26.7 5.2E+02 0.011 28.6 10.1 34 105-138 137-170 (405)
311 PF07851 TMPIT: TMPIT-like pro 26.5 6.2E+02 0.013 27.9 10.9 79 73-160 3-81 (330)
312 PF13094 CENP-Q: CENP-Q, a CEN 26.5 3.6E+02 0.0078 25.8 8.4 18 107-124 33-50 (160)
313 KOG0161 Myosin class II heavy 26.4 7.2E+02 0.016 33.7 13.1 16 481-496 1471-1486(1930)
314 PF02183 HALZ: Homeobox associ 26.4 1.6E+02 0.0034 23.2 4.7 32 107-138 4-35 (45)
315 PF05384 DegS: Sensor protein 26.3 6.4E+02 0.014 24.9 14.0 26 140-165 98-123 (159)
316 KOG4673 Transcription factor T 26.2 5.5E+02 0.012 31.2 10.9 38 101-138 725-762 (961)
317 COG4985 ABC-type phosphate tra 26.0 6.6E+02 0.014 26.7 10.4 58 108-165 186-246 (289)
318 PF10481 CENP-F_N: Cenp-F N-te 26.0 2.8E+02 0.0061 29.9 7.9 74 86-162 1-79 (307)
319 PF14197 Cep57_CLD_2: Centroso 25.9 4.2E+02 0.009 22.6 8.8 33 107-139 25-57 (69)
320 KOG4234 TPR repeat-containing 25.8 2.5E+02 0.0054 29.5 7.3 67 442-514 164-234 (271)
321 TIGR02680 conserved hypothetic 25.8 1E+03 0.022 31.0 14.2 34 105-138 886-919 (1353)
322 PRK00736 hypothetical protein; 25.7 3.2E+02 0.0068 23.1 6.8 9 103-111 7-15 (68)
323 PF07989 Microtub_assoc: Micro 25.7 4.4E+02 0.0095 22.8 8.7 29 78-112 4-32 (75)
324 PF09787 Golgin_A5: Golgin sub 25.4 8E+02 0.017 28.2 12.2 13 336-348 367-379 (511)
325 PRK04406 hypothetical protein; 25.3 3.1E+02 0.0068 23.7 6.8 7 104-110 14-20 (75)
326 PF15450 DUF4631: Domain of un 25.3 5.7E+02 0.012 29.9 10.7 81 77-162 379-463 (531)
327 PF04912 Dynamitin: Dynamitin 25.3 9E+02 0.019 26.6 12.2 8 75-82 269-276 (388)
328 PLN02281 chlorophyllide a oxyg 25.2 9.6E+02 0.021 28.2 12.6 68 114-185 120-187 (536)
329 KOG0982 Centrosomal protein Nu 25.2 1.1E+03 0.024 27.2 13.5 16 67-82 250-265 (502)
330 KOG2264 Exostosin EXT1L [Signa 25.0 3.7E+02 0.0079 31.9 9.1 35 105-139 97-131 (907)
331 PF12128 DUF3584: Protein of u 24.9 1E+03 0.022 30.4 14.0 32 480-512 771-802 (1201)
332 PRK00409 recombination and DNA 24.9 1.1E+03 0.023 28.9 13.6 6 66-71 500-505 (782)
333 PF11544 Spc42p: Spindle pole 24.8 4.8E+02 0.011 23.0 8.1 32 102-133 6-37 (76)
334 COG5185 HEC1 Protein involved 24.8 9.5E+02 0.021 28.1 12.1 58 69-127 297-356 (622)
335 COG3879 Uncharacterized protei 24.7 3.4E+02 0.0073 28.8 8.2 57 108-164 50-106 (247)
336 PF09728 Taxilin: Myosin-like 24.3 9.2E+02 0.02 26.0 12.0 43 97-139 219-268 (309)
337 PF14282 FlxA: FlxA-like prote 24.3 2.4E+02 0.0052 25.7 6.3 19 147-165 58-76 (106)
338 cd07622 BAR_SNX4 The Bin/Amphi 24.2 6.8E+02 0.015 25.3 10.2 74 413-500 16-90 (201)
339 TIGR01010 BexC_CtrB_KpsE polys 24.1 5.4E+02 0.012 27.8 10.1 23 101-123 177-199 (362)
340 TIGR00019 prfA peptide chain r 24.1 6.5E+02 0.014 28.0 10.7 25 72-96 5-29 (360)
341 COG4477 EzrA Negative regulato 24.1 7.9E+02 0.017 29.0 11.5 20 102-121 165-184 (570)
342 PHA01750 hypothetical protein 24.1 3E+02 0.0064 23.7 6.2 15 148-162 57-71 (75)
343 PF01093 Clusterin: Clusterin; 24.0 3.3E+02 0.0072 31.0 8.6 14 369-382 267-280 (436)
344 PF03154 Atrophin-1: Atrophin- 23.8 5.4E+02 0.012 32.2 10.7 18 188-205 133-150 (982)
345 PRK12705 hypothetical protein; 23.8 7.7E+02 0.017 28.7 11.6 15 534-548 473-487 (508)
346 KOG4674 Uncharacterized conser 23.7 1E+03 0.022 32.1 13.5 28 100-127 797-824 (1822)
347 PF14257 DUF4349: Domain of un 23.6 2.5E+02 0.0053 29.0 7.1 58 103-164 134-193 (262)
348 PF04108 APG17: Autophagy prot 23.6 5.8E+02 0.013 28.5 10.4 36 483-519 363-402 (412)
349 TIGR02231 conserved hypothetic 23.5 6.8E+02 0.015 28.6 11.2 18 75-92 72-89 (525)
350 PLN03188 kinesin-12 family pro 23.5 7.9E+02 0.017 31.9 12.1 78 76-156 1175-1252(1320)
351 COG4985 ABC-type phosphate tra 23.5 7.4E+02 0.016 26.3 10.2 28 58-86 153-183 (289)
352 PRK04406 hypothetical protein; 23.5 3.4E+02 0.0073 23.5 6.7 13 106-118 9-21 (75)
353 KOG3859 Septins (P-loop GTPase 23.5 1E+03 0.022 26.3 11.6 7 76-82 283-289 (406)
354 KOG1937 Uncharacterized conser 23.4 4E+02 0.0087 30.6 8.9 11 144-154 386-396 (521)
355 PF12777 MT: Microtubule-bindi 23.3 5.2E+02 0.011 28.0 9.8 26 97-122 11-36 (344)
356 KOG4593 Mitotic checkpoint pro 23.2 5.9E+02 0.013 30.8 10.6 90 67-163 251-342 (716)
357 PF15066 CAGE1: Cancer-associa 23.1 9.5E+02 0.021 27.9 11.7 8 100-107 361-368 (527)
358 KOG4674 Uncharacterized conser 23.1 8.8E+02 0.019 32.7 12.8 14 77-90 808-821 (1822)
359 PRK11020 hypothetical protein; 23.0 4.1E+02 0.0089 25.1 7.5 44 79-123 10-53 (118)
360 PF14643 DUF4455: Domain of un 22.9 1.1E+03 0.023 26.9 12.5 150 363-550 295-451 (473)
361 PF06160 EzrA: Septation ring 22.8 1.1E+03 0.024 27.5 12.8 9 563-571 500-508 (560)
362 PRK13182 racA polar chromosome 22.7 4.4E+02 0.0095 26.3 8.3 17 144-160 129-145 (175)
363 PF14282 FlxA: FlxA-like prote 22.6 2.5E+02 0.0054 25.6 6.1 18 146-163 50-67 (106)
364 KOG1785 Tyrosine kinase negati 22.6 1.2E+02 0.0027 34.1 4.8 44 270-323 469-543 (563)
365 PF11172 DUF2959: Protein of u 22.6 6.4E+02 0.014 26.0 9.5 54 72-127 26-83 (201)
366 TIGR01339 phycocy_beta phycocy 22.6 97 0.0021 30.9 3.7 26 397-422 6-31 (170)
367 PF09727 CortBP2: Cortactin-bi 22.2 8.5E+02 0.019 24.9 12.9 62 102-163 114-175 (192)
368 COG0216 PrfA Protein chain rel 22.2 7.9E+02 0.017 27.4 10.6 23 387-409 256-278 (363)
369 PF13864 Enkurin: Calmodulin-b 22.1 1.7E+02 0.0036 26.1 4.8 12 148-159 82-93 (98)
370 PF15605 Toxin_52: Putative to 21.9 1.7E+02 0.0037 27.0 4.7 48 447-494 46-99 (103)
371 PRK13169 DNA replication intia 21.9 4.3E+02 0.0093 24.6 7.5 22 71-92 5-26 (110)
372 PF06548 Kinesin-related: Kine 21.8 1.2E+03 0.026 26.9 12.2 78 76-156 405-482 (488)
373 KOG4673 Transcription factor T 21.7 7.5E+02 0.016 30.1 10.9 69 63-139 850-921 (961)
374 PF13874 Nup54: Nucleoporin co 21.4 3.9E+02 0.0085 25.3 7.4 64 70-139 33-96 (141)
375 TIGR03007 pepcterm_ChnLen poly 21.3 9.3E+02 0.02 27.0 11.6 13 76-88 256-268 (498)
376 TIGR02338 gimC_beta prefoldin, 21.3 6.1E+02 0.013 22.9 10.8 25 66-90 2-26 (110)
377 KOG4360 Uncharacterized coiled 21.3 1.3E+03 0.028 27.2 12.3 36 104-139 215-250 (596)
378 PF05873 Mt_ATP-synt_D: ATP sy 21.3 1.1E+02 0.0024 30.0 3.8 94 68-163 26-126 (161)
379 PF06005 DUF904: Protein of un 21.1 5.4E+02 0.012 22.1 9.2 7 106-112 9-15 (72)
380 COG4942 Membrane-bound metallo 21.0 1.3E+03 0.027 26.4 13.7 14 365-378 393-406 (420)
381 KOG0963 Transcription factor/C 21.0 1.1E+03 0.025 28.1 12.2 30 132-161 181-210 (629)
382 PF05852 DUF848: Gammaherpesvi 21.0 7.4E+02 0.016 24.3 9.2 23 100-122 60-82 (146)
383 PF02994 Transposase_22: L1 tr 20.9 83 0.0018 34.7 3.1 11 10-20 1-11 (370)
384 PF10805 DUF2730: Protein of u 20.9 6.4E+02 0.014 22.9 9.5 74 72-151 26-101 (106)
385 KOG0018 Structural maintenance 20.9 1.2E+03 0.026 29.7 12.8 64 102-165 684-750 (1141)
386 KOG4466 Component of histone d 20.8 8E+02 0.017 26.6 10.1 44 79-122 40-85 (291)
387 PF05879 RHD3: Root hair defec 20.8 1.6E+03 0.034 27.4 14.3 77 460-537 469-558 (742)
388 PF06657 Cep57_MT_bd: Centroso 20.8 4.7E+02 0.01 22.7 7.1 17 76-92 19-35 (79)
389 CHL00173 cpeA phycoerythrin al 20.8 4.5E+02 0.0098 26.1 7.9 29 397-425 8-36 (164)
390 KOG0972 Huntingtin interacting 20.7 7.5E+02 0.016 27.2 9.8 23 114-136 272-294 (384)
391 KOG0978 E3 ubiquitin ligase in 20.7 7.1E+02 0.015 30.2 10.7 35 105-139 584-618 (698)
392 PLN03229 acetyl-coenzyme A car 20.7 5.4E+02 0.012 31.4 9.7 45 67-112 429-477 (762)
393 COG3524 KpsE Capsule polysacch 20.6 3.9E+02 0.0085 29.4 7.8 8 46-53 108-115 (372)
394 PF02388 FemAB: FemAB family; 20.5 4E+02 0.0087 29.6 8.3 54 107-161 241-294 (406)
395 KOG2991 Splicing regulator [RN 20.5 1E+03 0.022 25.7 10.6 33 102-134 237-269 (330)
396 PF13863 DUF4200: Domain of un 20.4 6.4E+02 0.014 22.8 13.9 20 72-91 5-24 (126)
397 KOG4196 bZIP transcription fac 20.4 7.9E+02 0.017 23.8 9.2 22 126-147 78-99 (135)
398 CHL00171 cpcB phycocyanin beta 20.4 83 0.0018 31.3 2.7 26 509-536 116-141 (172)
399 PRK04778 septation ring format 20.3 9.2E+02 0.02 28.1 11.5 11 461-471 540-550 (569)
400 KOG4590 Signal transduction pr 20.3 2.1E+02 0.0044 32.4 6.0 17 367-383 260-276 (409)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.88 E-value=4.6e-21 Score=213.41 Aligned_cols=100 Identities=17% Similarity=0.164 Sum_probs=88.4
Q ss_pred CCcchhhHhHHHHHHhhhhhhhhhhccccc---chhhHHHHHHHHhhccccC--------------hhhhhhhhhhhHHH
Q 007155 364 LPATSNARDMIGEIENRSAHLLAIKTDVET---QGDFIRYLIKEVESAAFTD--------------IEDVVPFVKWLDDE 426 (615)
Q Consensus 364 ~~~k~~~~DL~~ELenrSs~l~aiK~DVEd---~~k~IkkL~kELrvld~kd--------------~eeV~~fv~wvDee 426 (615)
--+++++.|||++|+.+|+++.+++++.++ .++..+|+++||+++|.|+ |++|+.+|++||+.
T Consensus 649 ~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~ 728 (1102)
T KOG1924|consen 649 NEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNED 728 (1102)
T ss_pred chhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecchHHHHHHHHHHhhccCCHHHHHHHHhhccHH
Confidence 346899999999999999999999988777 3334599999999999984 68899999999999
Q ss_pred HhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHH
Q 007155 427 LSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVE 464 (615)
Q Consensus 427 L~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLe 464 (615)
+.+...+++++||+|.+++ ++.|++.+.+|.+|.+.+
T Consensus 729 vLse~~iqnLik~lPe~E~-l~~L~e~Kaeye~l~e~E 765 (1102)
T KOG1924|consen 729 VLSESMIQNLIKHLPEQEQ-LNKLSELKAEYEDLPEPE 765 (1102)
T ss_pred HHHHHHHHHHHHhCCCHHH-HHHHHHHHHhccCCCCHH
Confidence 8888889999999997666 999999999999998876
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.1e-07 Score=108.07 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhH
Q 007155 72 LLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKI 124 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~ 124 (615)
+.+-..+|+.+ -|+|++++..++ ++.+..+.+.+++ .+..++.+|.|+.
T Consensus 315 l~t~p~dldfR-lhlR~E~mr~gL-~~~l~~l~~i~n~--~ldvqlkvfdE~~ 363 (1102)
T KOG1924|consen 315 LVTSPSDLDFR-LHLRSEFMRDGL-HKYLPDLTEINND--ILDVQLKVFDEHK 363 (1102)
T ss_pred hcCCHHHhhHH-HHHHHHHHHHhH-HHHHHHhhhhccH--HHHHHHHHHhhhh
Confidence 33344667888 789999988775 4433344433444 4456777777766
No 3
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=1.1e-05 Score=92.34 Aligned_cols=93 Identities=20% Similarity=0.166 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007155 69 VAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKK 148 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeR 148 (615)
.+.+|++++.+.++++| .++++ ++++++.....|+..+.++++|.+........+.+++..|..-..+.+++....
T Consensus 161 k~~~le~v~~~~~~ish--er~~~--v~~~~~s~~A~l~~~s~sl~~er~~~~~~~~~~~dels~m~k~~~~~e~~lk~~ 236 (830)
T KOG1923|consen 161 KTFVLEFVETPADQISH--ERLQA--VEMAQASAPAPLPGASSSLNKEREPQSYQRKALLDELSCMQKLSIEKERSLKAI 236 (830)
T ss_pred hhHHHHhhcchhhhhhH--HHHHH--HHHHHhcCcccCchhhhhhhhhhhHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 36788888999999999 66677 789999999999999999999999988888888999999988888888888777
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007155 149 MKEMEQEIEELKKAASE 165 (615)
Q Consensus 149 isELEkqL~ELeKe~~~ 165 (615)
...|+.++.+++..+..
T Consensus 237 ~~~l~~ki~emq~~ss~ 253 (830)
T KOG1923|consen 237 ARLLETKIGEMQLASSA 253 (830)
T ss_pred HHhccCCcccccccccc
Confidence 78888888888766544
No 4
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.96 E-value=0.0041 Score=69.15 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=8.0
Q ss_pred cchhhHhHHHHHH
Q 007155 366 ATSNARDMIGEIE 378 (615)
Q Consensus 366 ~k~~~~DL~~ELe 378 (615)
++++-.+|++.|.
T Consensus 491 ~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 491 SGDGRDALMAQIR 503 (569)
T ss_pred CcccHHHHHHHHH
Confidence 4556666666665
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.02 E-value=0.18 Score=59.05 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 007155 148 KMKEMEQEIEELKKA 162 (615)
Q Consensus 148 RisELEkqL~ELeKe 162 (615)
....|+...-.|+++
T Consensus 190 ~~A~l~~~s~sl~~e 204 (830)
T KOG1923|consen 190 APAPLPGASSSLNKE 204 (830)
T ss_pred CcccCchhhhhhhhh
Confidence 333344433333333
No 6
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.33 E-value=0.12 Score=57.82 Aligned_cols=9 Identities=22% Similarity=-0.045 Sum_probs=3.9
Q ss_pred ccCCCCCCC
Q 007155 210 VISSLSSDT 218 (615)
Q Consensus 210 ~~~~~~~~~ 218 (615)
..|...++.
T Consensus 303 ~~Sv~~~~~ 311 (569)
T KOG3671|consen 303 LPSVGQSAA 311 (569)
T ss_pred Ccccccchh
Confidence 344444433
No 7
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=94.88 E-value=0.37 Score=53.27 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=12.0
Q ss_pred CCcchhhHhHHHHHHh
Q 007155 364 LPATSNARDMIGEIEN 379 (615)
Q Consensus 364 ~~~k~~~~DL~~ELen 379 (615)
....+.-.||++-|..
T Consensus 450 P~~sDaRsdLL~aIr~ 465 (518)
T KOG1830|consen 450 PPISDARSDLLAAIRS 465 (518)
T ss_pred CCCCchHHHHHHHHHh
Confidence 4556777899988876
No 8
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=94.50 E-value=0.49 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 141 NKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 141 eEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
...++.+||++||.++..|..+-..
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999887654
No 9
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=94.24 E-value=1.3 Score=46.77 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=28.3
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 007155 96 VKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIE 157 (615)
Q Consensus 96 ekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ 157 (615)
+||+..+|-+-|+|+..+..+|-.++|.- .|+|..+....|. .+|+...|++|.+-|.
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLA--LKEARkEIkQLkQvie 134 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLA--LKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45555666666666666666666544321 2334444444443 2334444444444333
No 10
>PHA03247 large tegument protein UL36; Provisional
Probab=94.03 E-value=0.36 Score=62.82 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhhhchHHHhhhh
Q 007155 485 MQALLEKLEHGVYNLSRMRESATKRY 510 (615)
Q Consensus 485 m~~~l~K~e~~v~~l~r~r~~~~~~~ 510 (615)
|.=|++-+++.+++|-+||+-.+.+-
T Consensus 3111 lAlLi~ACr~i~r~lr~TR~~L~~~~ 3136 (3151)
T PHA03247 3111 LAVLIEACRRIRRQLRRTRHALLDRS 3136 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44456666666777777776544443
No 11
>PHA01732 proline-rich protein
Probab=93.99 E-value=0.057 Score=47.61 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.8
Q ss_pred hhhHHHHHH
Q 007155 337 IPEVVEFYH 345 (615)
Q Consensus 337 ~p~lv~~y~ 345 (615)
++.|.+.-.
T Consensus 44 apki~~~~s 52 (94)
T PHA01732 44 APKIREAQS 52 (94)
T ss_pred hhHHHHHHH
Confidence 344444433
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=93.44 E-value=0.42 Score=62.22 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=9.3
Q ss_pred ccccccccccCCCCC
Q 007155 43 KTAFSRSFGVYFPRS 57 (615)
Q Consensus 43 ~~~~~~~~g~~~prs 57 (615)
..+|++-=|.+||--
T Consensus 2320 ~~~fS~~SgL~Lc~~ 2334 (3151)
T PHA03247 2320 DPAFSRGSELELCVT 2334 (3151)
T ss_pred ccccCCCCcceehhh
Confidence 446777666666643
No 13
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=93.09 E-value=0.32 Score=54.79 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=10.1
Q ss_pred cccccccCCCCCC--CCCC
Q 007155 46 FSRSFGVYFPRSS--AQVQ 62 (615)
Q Consensus 46 ~~~~~g~~~prs~--~qv~ 62 (615)
=+-+||..++-.. ..|.
T Consensus 109 ~T~~~~~~~~~~P~~~~V~ 127 (817)
T KOG1925|consen 109 PTSSTGPALLTGPASSPVG 127 (817)
T ss_pred CcccCCccccCCCCCCCCC
Confidence 3456777777654 4454
No 14
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=91.54 E-value=9 Score=38.62 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh----------------------------hhhHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEML----------------------------EQNKREREKKMKEME 153 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL----------------------------deeEqEaeeRisELE 153 (615)
.+.+....|...-.||..+++....++++|.+|+..+ .++...+.+|+.+||
T Consensus 42 lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eLE 121 (195)
T PF10226_consen 42 LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKELE 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777777777777777776665422 234556677788888
Q ss_pred HHHHHHHHHh
Q 007155 154 QEIEELKKAA 163 (615)
Q Consensus 154 kqL~ELeKe~ 163 (615)
.+..+|.++-
T Consensus 122 ~kq~~L~rEN 131 (195)
T PF10226_consen 122 DKQEELIREN 131 (195)
T ss_pred HHHHHHHHhH
Confidence 8887777665
No 15
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.53 E-value=0.13 Score=62.18 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=5.3
Q ss_pred Hhhhhhcceeeccc
Q 007155 561 IVQGVRFAFRVHQF 574 (615)
Q Consensus 561 l~q~~~fafrvhqf 574 (615)
||..+|.-==||-|
T Consensus 267 l~~~ird~ny~Ylf 280 (2365)
T COG5178 267 LWESIRDVNYVYLF 280 (2365)
T ss_pred cHHHhccccEEEEe
Confidence 34444433333333
No 16
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.99 E-value=3.2 Score=42.14 Aligned_cols=64 Identities=9% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 74 RLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.++..++.++..++.++.+ +..++-....+|+..+.+.+.++..++++..++.+++..++.+++
T Consensus 93 ~rlp~le~el~~l~~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNN--IDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666655 444444566666666666666655555555555555555444444
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=7.4 Score=42.36 Aligned_cols=18 Identities=17% Similarity=-0.169 Sum_probs=9.4
Q ss_pred hhhhhhhhhhhHHHHhHH
Q 007155 413 IEDVVPFVKWLDDELSYL 430 (615)
Q Consensus 413 ~eeV~~fv~wvDeeL~~l 430 (615)
.++|..-+..++.++.+|
T Consensus 241 ~EeL~~G~~kL~~~~etL 258 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETL 258 (365)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 455555555555555444
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.51 E-value=5.1 Score=42.98 Aligned_cols=55 Identities=36% Similarity=0.456 Sum_probs=25.2
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
.|..+|.+...+++.+++.+.+++.++..+...++ +...++.++..+|.++++..
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~----~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIE----ELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443 33333444555555555444
No 19
>PRK09752 adhesin; Provisional
Probab=87.95 E-value=0.41 Score=58.71 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=3.5
Q ss_pred hhhccCC
Q 007155 509 RYRGFQI 515 (615)
Q Consensus 509 ~~~~~~i 515 (615)
+|+.+|+
T Consensus 1103 ~Y~S~G~ 1109 (1250)
T PRK09752 1103 HYHSSGI 1109 (1250)
T ss_pred ceeeeeE
Confidence 4555543
No 20
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.21 E-value=15 Score=37.11 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh----HHHHHHH
Q 007155 73 LRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQN----KREREKK 148 (615)
Q Consensus 73 LRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdee----EqEaeeR 148 (615)
+..+++|+.++......... +...-.++..++.++..+.-+-+++...+..++.+...|..++... .+.+.-+
T Consensus 68 ~~e~~eL~k~L~~y~kdK~~---L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~k 144 (201)
T PF13851_consen 68 EEEVEELRKQLKNYEKDKQS---LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLK 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566665554444443 3334467778888999988898988888888888888888777644 4444445
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007155 149 MKEMEQEIEELKKAASE 165 (615)
Q Consensus 149 isELEkqL~ELeKe~~~ 165 (615)
..-||+++..|....+.
T Consensus 145 n~lLEkKl~~l~~~lE~ 161 (201)
T PF13851_consen 145 NLLLEKKLQALSEQLEK 161 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66788888888877654
No 21
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.46 E-value=11 Score=39.58 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 007155 79 LRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEE 158 (615)
Q Consensus 79 Leerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~E 158 (615)
+.++-.+++.+|.+ ...-+.++-.+||.+|.|++.....+......|..+..+++.+++...-+.-+.+..||..+.+
T Consensus 25 ykq~f~~~reEl~E--FQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsq 102 (333)
T KOG1853|consen 25 YKQHFLQMREELNE--FQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQ 102 (333)
T ss_pred HHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555544 1112234555677777777666666666666666666666666665555555555566655555
Q ss_pred HHHH
Q 007155 159 LKKA 162 (615)
Q Consensus 159 LeKe 162 (615)
+...
T Consensus 103 t~ai 106 (333)
T KOG1853|consen 103 THAI 106 (333)
T ss_pred HHHH
Confidence 5433
No 22
>PRK11637 AmiB activator; Provisional
Probab=84.82 E-value=15 Score=40.72 Aligned_cols=91 Identities=7% Similarity=0.118 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHH-HHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007155 72 LLRLVEELRERESLLKTELVEHK-LVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMK 150 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~k-lekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRis 150 (615)
.+...++++.++..+..++...+ -.++....+..|+.++...+.+++.....+..++.++..+..++.+.+.+......
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555444444443211 11222233444455555555555555555555555555555555544444444444
Q ss_pred HHHHHHHHHHHH
Q 007155 151 EMEQEIEELKKA 162 (615)
Q Consensus 151 ELEkqL~ELeKe 162 (615)
.|..++..+-+.
T Consensus 125 ~l~~rlra~Y~~ 136 (428)
T PRK11637 125 LLAAQLDAAFRQ 136 (428)
T ss_pred HHHHHHHHHHHc
Confidence 444444444443
No 23
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=84.18 E-value=2.2 Score=47.51 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=7.9
Q ss_pred hhHhHHHHHHhhhhh
Q 007155 369 NARDMIGEIENRSAH 383 (615)
Q Consensus 369 ~~~DL~~ELenrSs~ 383 (615)
.+..|++++..+-.+
T Consensus 258 ~~~~l~a~~~~~~~~ 272 (409)
T KOG4590|consen 258 GMASLMAEMAKRLAR 272 (409)
T ss_pred hhhhhhhhhhhccce
Confidence 444566666554443
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=81.77 E-value=38 Score=35.44 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+.++.+++.|+..+++....+++++..+..++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666655554444
No 25
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.77 E-value=32 Score=32.97 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=10.3
Q ss_pred hhhhHHHHHHHhHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk 123 (615)
++..||.++...+..+...+..
T Consensus 43 K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 43 KNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555544444433
No 26
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=81.36 E-value=8 Score=45.91 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=6.6
Q ss_pred chHHHHHHHHH
Q 007155 67 PDVAELLRLVE 77 (615)
Q Consensus 67 pevlElLRrVe 77 (615)
||-+=+|+.|.
T Consensus 681 PEsLF~LEemR 691 (1106)
T KOG0162|consen 681 PESLFLLEEMR 691 (1106)
T ss_pred hHHHHHHHHHH
Confidence 66666666643
No 27
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=81.21 E-value=38 Score=39.23 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=9.0
Q ss_pred hhhccCCCchhhhhhhhHH
Q 007155 509 RYRGFQIPMDWMLETGIVS 527 (615)
Q Consensus 509 ~~~~~~ip~~wm~d~gi~~ 527 (615)
.|-..+.+.-| |||.
T Consensus 372 mft~~n~~Lvw----GIiR 386 (582)
T PF03276_consen 372 MFTNQNFDLVW----GIIR 386 (582)
T ss_pred eeecCCcchhh----hhhh
Confidence 45555556666 7773
No 28
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=19 Score=41.99 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 128 QCENERLKEMLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 128 EeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
+.++..|+.+|. +...++.+|+.++.+|.+...
T Consensus 480 ~~~I~~L~~~L~----e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 480 DRRIERLEKELE----EKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444 445556677777777776654
No 29
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=80.67 E-value=59 Score=36.72 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=4.4
Q ss_pred HHHHhcccc
Q 007155 451 REAAFGYFD 459 (615)
Q Consensus 451 reaa~~Y~d 459 (615)
|..+.+|.+
T Consensus 495 RRiaveysd 503 (518)
T KOG1830|consen 495 RRIAVEYSD 503 (518)
T ss_pred HHHHHHhcc
Confidence 444555554
No 30
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=80.56 E-value=3.6 Score=42.53 Aligned_cols=86 Identities=23% Similarity=0.328 Sum_probs=53.2
Q ss_pred hhhhhccCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-------CC------Cchhh-hHHhhhhhccee--
Q 007155 507 TKRYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKRVSAELETV-------GG------SPEEE-ELIVQGVRFAFR-- 570 (615)
Q Consensus 507 ~~~~~~~~ip~~wm~d~gi~~~ik~~sv~lA~~~~krv~~e~~~~-------~~------~~~~~-~ll~q~~~fafr-- 570 (615)
..|....||-.+=|---.-+++-|+-+++---.|..++..|.+.. .+ +.-++ .-+.-.+.--=|
T Consensus 96 l~Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~Rig 175 (281)
T KOG3997|consen 96 LQRCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRIG 175 (281)
T ss_pred HHHHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhhe
Confidence 345666666655443334467888888875556777777776551 11 11122 233344433333
Q ss_pred -----eccccCCCchhHhHHHHHHHHH
Q 007155 571 -----VHQFAGGFDVETMRAFQELRDK 592 (615)
Q Consensus 571 -----vhqfAGG~d~~~~~af~el~~~ 592 (615)
-|+||+|+|=+|-++|+|+-+.
T Consensus 176 VClDTCH~FaaGyDI~Tee~y~evmke 202 (281)
T KOG3997|consen 176 VCLDTCHTFAAGYDIRTEEAYEEVMKE 202 (281)
T ss_pred eeHhhhhhhccccccchHHHHHHHHHH
Confidence 3999999999999999998553
No 31
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=80.22 E-value=24 Score=40.81 Aligned_cols=62 Identities=27% Similarity=0.400 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE---QNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd---eeEqEaeeRisELEkqL~ELeKe~ 163 (615)
.+..|+.+|.....+++.++...+++......+..+.+ ....+...++.+||..+..+....
T Consensus 172 ~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 172 EVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655555544444444333 344556667777777777776555
No 32
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.98 E-value=24 Score=38.03 Aligned_cols=14 Identities=43% Similarity=0.563 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 007155 148 KMKEMEQEIEELKK 161 (615)
Q Consensus 148 RisELEkqL~ELeK 161 (615)
++.+++.+|.++++
T Consensus 247 ~k~e~~~~I~~ae~ 260 (312)
T smart00787 247 KKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 33
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=79.31 E-value=6.6 Score=43.69 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=12.6
Q ss_pred CCcchhhHhHHHHHHhhhhhhhhh
Q 007155 364 LPATSNARDMIGEIENRSAHLLAI 387 (615)
Q Consensus 364 ~~~k~~~~DL~~ELenrSs~l~ai 387 (615)
...+-.++++=+||+.---..+.+
T Consensus 417 isakPqi~N~kaElT~~VPa~lRV 440 (487)
T KOG4672|consen 417 ISAKPQIRNLKAELTRLVPAQLRV 440 (487)
T ss_pred eecchhccccchHHHhhcchheee
Confidence 344555666677776533333333
No 34
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.11 E-value=58 Score=31.75 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHH
Q 007155 112 AKNTELELSFKKIESLQCENERLK 135 (615)
Q Consensus 112 qkekELE~LrEk~EELEeE~~rLk 135 (615)
.....++.+++...++.++...+.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 35
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=78.77 E-value=30 Score=36.59 Aligned_cols=62 Identities=23% Similarity=0.218 Sum_probs=36.8
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH----------HHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 99 SAAIVPVLESEIAAKNTELELSFKKIESLQCENERLK----------EMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk----------~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
.+..+..||.++.+.....+.+++-+-+|+.-+..|. ..++.....+.+++..||.++.+-+
T Consensus 89 ~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke 160 (333)
T KOG1853|consen 89 FYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE 160 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3345557777777777777777766666654443332 1233445667777777776665543
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.59 E-value=71 Score=39.25 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=17.7
Q ss_pred CchHHHHHHHHHHHHHHHhHhHhHHHH
Q 007155 66 VPDVAELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 66 spevlElLRrVeeLeerls~Lr~Efle 92 (615)
+-.+.++...+.+|.+.+..+|-...+
T Consensus 223 skte~eLr~QvrdLtEkLetlR~kR~E 249 (1243)
T KOG0971|consen 223 SKTEEELRAQVRDLTEKLETLRLKRAE 249 (1243)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445666666677787777777665544
No 37
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=78.04 E-value=9.6 Score=45.77 Aligned_cols=10 Identities=0% Similarity=-0.087 Sum_probs=6.0
Q ss_pred hhhHHHHHHh
Q 007155 337 IPEVVEFYHS 346 (615)
Q Consensus 337 ~p~lv~~y~s 346 (615)
.+.|.-+||.
T Consensus 393 ~~~lk~l~wd 402 (833)
T KOG1922|consen 393 KNKLKPLHWD 402 (833)
T ss_pred CCCCCCcccc
Confidence 4556666664
No 38
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=77.65 E-value=28 Score=40.79 Aligned_cols=92 Identities=22% Similarity=0.241 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHH--h-------hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 007155 70 AELLRLVEELRERESLLKTELVEHKLVKASA--A-------IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQ 140 (615)
Q Consensus 70 lElLRrVeeLeerls~Lr~Efle~klekEa~--~-------kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLde 140 (615)
-..+.++..++.+..+|+..+..+..-...- . .+...|.++.++..+++.++.. +.++...++..|..
T Consensus 245 e~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S---~~~e~e~~~~qI~~ 321 (629)
T KOG0963|consen 245 EDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS---LVEEREKHKAQISA 321 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3456677788888888888887655443321 1 1222355555555555544332 35556677778888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 141 NKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 141 eEqEaeeRisELEkqL~ELeKe~~ 164 (615)
.+++...++.+||.....|+...+
T Consensus 322 le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 322 LEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888888888887776654
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.60 E-value=63 Score=30.34 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=48.0
Q ss_pred CCCCCCCchHHH-HHHHHHHHHHHHhHhHhHHHHHHHHHHH-HhhhhhH---HHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 60 QVQPRPVPDVAE-LLRLVEELRERESLLKTELVEHKLVKAS-AAIVPVL---ESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 60 qv~~~~spevlE-lLRrVeeLeerls~Lr~Efle~klekEa-~~kl~eL---E~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
.+..|++...++ +...+..++.++..+++++....-.++. .+-|-.| -.++.....++..++..+.+++.....+
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTL 87 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444 3444777888888888887552222221 1111111 1222333444444555555555555555
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 135 KEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 135 k~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
-..+.++ .+...+|...+..++..-
T Consensus 88 LellGEK----~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 88 LELLGEK----SEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHhcch----HHHHHHHHHHHHHHHHHH
Confidence 5555433 333445555555555443
No 40
>PRK11637 AmiB activator; Provisional
Probab=76.98 E-value=30 Score=38.36 Aligned_cols=16 Identities=6% Similarity=0.291 Sum_probs=8.1
Q ss_pred HHHHHHHhHhHhHHHH
Q 007155 77 EELRERESLLKTELVE 92 (615)
Q Consensus 77 eeLeerls~Lr~Efle 92 (615)
+.+++++..++.++..
T Consensus 43 ~~~~~~l~~l~~qi~~ 58 (428)
T PRK11637 43 SDNRDQLKSIQQDIAA 58 (428)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3455555555555433
No 41
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=76.86 E-value=2.4 Score=48.17 Aligned_cols=31 Identities=13% Similarity=0.363 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhhhhhchHHHhhhhhcc
Q 007155 483 KKMQALLEKLEHGVYNLSRMRESATKRYRGF 513 (615)
Q Consensus 483 kKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~ 513 (615)
.+|..+|+.+.++|--|--.-.-...||-.|
T Consensus 583 ~r~~~fl~~cA~RI~~LKivhrr~~NRfHSF 613 (817)
T KOG1925|consen 583 ARLTHFLDQCARRIAMLKIVHRRVCNRFHSF 613 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666544432222244455544
No 42
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.48 E-value=1e+02 Score=34.57 Aligned_cols=18 Identities=6% Similarity=0.134 Sum_probs=8.6
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 007155 136 EMLEQNKREREKKMKEME 153 (615)
Q Consensus 136 ~eLdeeEqEaeeRisELE 153 (615)
+.+.+.-..+..|+..||
T Consensus 301 Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 301 RDIWEVMESCQTRISKLE 318 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333344444555555555
No 43
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.06 E-value=21 Score=42.77 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=6.8
Q ss_pred eeccccCCCchh
Q 007155 570 RVHQFAGGFDVE 581 (615)
Q Consensus 570 rvhqfAGG~d~~ 581 (615)
=+|.++.-.|||
T Consensus 1058 amYdY~AqndDE 1069 (1118)
T KOG1029|consen 1058 AMYDYEAQNDDE 1069 (1118)
T ss_pred EeeccccCCccc
Confidence 346666666654
No 44
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=75.75 E-value=3 Score=46.55 Aligned_cols=11 Identities=27% Similarity=0.748 Sum_probs=7.1
Q ss_pred hhhccCCCchh
Q 007155 509 RYRGFQIPMDW 519 (615)
Q Consensus 509 ~~~~~~ip~~w 519 (615)
.|.+|-||=.|
T Consensus 453 Dy~EfpvPEQf 463 (480)
T KOG2675|consen 453 DYVEFPVPEQF 463 (480)
T ss_pred CcccccChHHH
Confidence 57777776554
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.73 E-value=32 Score=35.09 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.4
Q ss_pred HHHHHHHHhHhHhHH
Q 007155 76 VEELRERESLLKTEL 90 (615)
Q Consensus 76 VeeLeerls~Lr~Ef 90 (615)
+.+++.++..+..+.
T Consensus 102 l~~l~~~l~~~~~~~ 116 (206)
T PRK10884 102 VKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHhHH
Confidence 444444444444443
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=74.92 E-value=58 Score=34.12 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
...+..++.+++.++.....|+..+..+...++.........+..||.++..+......
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~ 280 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMAR 280 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 33333444444444444444444444444455544555555566666666666555433
No 47
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.31 E-value=56 Score=31.01 Aligned_cols=78 Identities=8% Similarity=0.197 Sum_probs=38.9
Q ss_pred HHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 007155 78 ELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIE 157 (615)
Q Consensus 78 eLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ 157 (615)
.+-+++.++...+...| ++-..+|..|+..+.+...-.+.+++.+.++.+++..+...++ ........||.+|.
T Consensus 47 ~v~kql~~vs~~l~~tK--khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~----~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 47 SVSKQLEQVSESLSSTK--KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVD----SVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34444444444443322 2222355555555554444444444555555555555555554 44455667777777
Q ss_pred HHHH
Q 007155 158 ELKK 161 (615)
Q Consensus 158 ELeK 161 (615)
+++.
T Consensus 121 ~ie~ 124 (126)
T PF07889_consen 121 EIEE 124 (126)
T ss_pred HHhc
Confidence 6653
No 48
>PRK12704 phosphodiesterase; Provisional
Probab=74.14 E-value=61 Score=37.36 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=7.2
Q ss_pred chhHhHHHHHHHHHh
Q 007155 579 DVETMRAFQELRDKA 593 (615)
Q Consensus 579 d~~~~~af~el~~~~ 593 (615)
|.++..+-.++++++
T Consensus 481 d~~~~~la~~i~~~i 495 (520)
T PRK12704 481 DLQAVRLARDIAKKI 495 (520)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444555555443
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.14 E-value=56 Score=37.11 Aligned_cols=29 Identities=10% Similarity=0.315 Sum_probs=12.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007155 134 LKEMLEQNKREREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 134 Lk~eLdeeEqEaeeRisELEkqL~ELeKe 162 (615)
+...+++.++....-+..++.+|..|+.+
T Consensus 415 w~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 415 WRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333334445555555443
No 50
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.15 E-value=67 Score=37.03 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=7.7
Q ss_pred chhHhHHHHHHHHHh
Q 007155 579 DVETMRAFQELRDKA 593 (615)
Q Consensus 579 d~~~~~af~el~~~~ 593 (615)
|.++..+-.++++++
T Consensus 475 d~~~~~la~~i~~~i 489 (514)
T TIGR03319 475 DDQAVVLARDIAKKI 489 (514)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444555555555543
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.24 E-value=70 Score=33.49 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=3.7
Q ss_pred HHHHHHHhHh
Q 007155 77 EELRERESLL 86 (615)
Q Consensus 77 eeLeerls~L 86 (615)
+.++.+..++
T Consensus 55 e~le~qv~~~ 64 (239)
T COG1579 55 EDLENQVSQL 64 (239)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=72.17 E-value=87 Score=29.34 Aligned_cols=50 Identities=28% Similarity=0.422 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 114 NTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
+.++..++..+..+..+.......++..+..+..+...|+..+.+++...
T Consensus 65 r~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 65 REELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555555555555555555555555443
No 53
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.07 E-value=18 Score=33.24 Aligned_cols=42 Identities=29% Similarity=0.211 Sum_probs=33.0
Q ss_pred HHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 98 ASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 98 Ea~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+-.+.+..||.++.+...++..++..+.++.++|..|+-+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~ 46 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENE 46 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888888888888888888888888888877765555
No 54
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=71.23 E-value=3.8 Score=45.83 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=6.5
Q ss_pred CCchHHHHHHHHHHH
Q 007155 65 PVPDVAELLRLVEEL 79 (615)
Q Consensus 65 ~spevlElLRrVeeL 79 (615)
.+|.+..-...+.+.
T Consensus 46 ~p~~i~Ayd~~i~~~ 60 (480)
T KOG2675|consen 46 VPPSIRAYDDLISEP 60 (480)
T ss_pred CchHHHHHHHHHHhH
Confidence 344454444443333
No 55
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=71.11 E-value=69 Score=39.13 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhHhHhHHHHHHHHHH-------------------------HHhhhhhHHHHHHHhHHHHHHHHHh
Q 007155 69 VAELLRLVEELRERESLLKTELVEHKLVKA-------------------------SAAIVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Efle~klekE-------------------------a~~kl~eLE~ELeqkekELE~LrEk 123 (615)
..++.++..+++.++..+.+++.+.+.+++ +.-.+.++|++..++....+.+++.
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek 432 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEK 432 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555567777777777777665554332 1122345566666666667777777
Q ss_pred HHHHHHHHHHHHHHhh
Q 007155 124 IESLQCENERLKEMLE 139 (615)
Q Consensus 124 ~EELEeE~~rLk~eLd 139 (615)
+.++..+...|.++.+
T Consensus 433 ~t~l~~~h~~lL~K~~ 448 (980)
T KOG0980|consen 433 YTELRQEHADLLRKYD 448 (980)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666666555555444
No 56
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=71.05 E-value=49 Score=33.35 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEM 137 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~e 137 (615)
....+|.++.+.+.+...+.+.+.+++..+..+++.
T Consensus 111 ~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 111 ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344556666666555555555555666655555554
No 57
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.12 E-value=76 Score=32.56 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=13.4
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 007155 104 PVLESEIAAKNTELELSFKKIESLQCENERLK 135 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EELEeE~~rLk 135 (615)
..+|.+|...+.-++.+..++.+|+.++..+.
T Consensus 123 ~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~ 154 (237)
T PF00261_consen 123 KVLEQELERAEERAEAAESKIKELEEELKSVG 154 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 58
>PRK00106 hypothetical protein; Provisional
Probab=69.34 E-value=93 Score=36.18 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.5
Q ss_pred chhHhHHHHHHHHHh
Q 007155 579 DVETMRAFQELRDKA 593 (615)
Q Consensus 579 d~~~~~af~el~~~~ 593 (615)
|.++..+-.++.+++
T Consensus 496 D~~~~~la~~ia~~I 510 (535)
T PRK00106 496 DDQVTILAHKVREKI 510 (535)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344445555555543
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.23 E-value=1.2e+02 Score=29.65 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHhHhHHHH
Q 007155 74 RLVEELRERESLLKTELVE 92 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efle 92 (615)
..+.+.+.++..+.+++.+
T Consensus 81 ~e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hhHHhHHHHHHHHHHHHHH
Confidence 3444455555555555544
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.27 E-value=34 Score=36.79 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhh
Q 007155 150 KEMEQEIEELKKAASE 165 (615)
Q Consensus 150 sELEkqL~ELeKe~~~ 165 (615)
..|...+..|+...+.
T Consensus 279 ~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 279 KRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHCc
Confidence 3444444444444443
No 61
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=67.99 E-value=64 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=8.1
Q ss_pred HHhHHHHHHHHHHHHHHhh
Q 007155 121 FKKIESLQCENERLKEMLE 139 (615)
Q Consensus 121 rEk~EELEeE~~rLk~eLd 139 (615)
+.+..+||.|+.+|+.+|.
T Consensus 544 r~r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 62
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=67.63 E-value=1.7e+02 Score=30.91 Aligned_cols=31 Identities=29% Similarity=0.255 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENE 132 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~ 132 (615)
+..++|.++.++..|-++|+-+.+.|...+.
T Consensus 91 Rm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 91 RMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666555555544444444333
No 63
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.37 E-value=1.4e+02 Score=32.42 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=41.9
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKK 148 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeR 148 (615)
+.+|---+.|+|+=..+.=+++.|++.++++++.+.+++++++++-.+.+..
T Consensus 94 rkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~ 145 (302)
T PF09738_consen 94 RKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQ 145 (302)
T ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677789898888889999999999999999999998887555554433
No 64
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=67.16 E-value=24 Score=37.01 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=75.2
Q ss_pred hhcccccchhhHHHHHHHHhhccccChhhhhhhhhhhHHHHhHHHhHHHHHhcCC-CchHH----HHHHHHHHhcccchh
Q 007155 387 IKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFD-WPEQK----ADALREAAFGYFDLK 461 (615)
Q Consensus 387 iK~DVEd~~k~IkkL~kELrvld~kd~eeV~~fv~wvDeeL~~l~de~~VLK~Fp-~Pekk----ldaLreaa~~Y~dL~ 461 (615)
++.++.+.+...++|+.||.+.... -.||..|+..+|..+....- ..++.+.. .=++. .+.....+..-.||+
T Consensus 118 Ly~e~~~vk~~qkrLdq~L~~I~sq-Q~ELE~~L~~lE~k~~~~~g-~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~ 195 (254)
T KOG2196|consen 118 LYNEVVKVKLDQKRLDQELEFILSQ-QQELEDLLDPLETKLELQSG-HTYLSRADVEREQTYKMAENIDSQLKRLSEDLK 195 (254)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccc-chhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4445555666677788888775222 46777777777777644210 01111111 00111 111223345556778
Q ss_pred hHHHhhcccc-----CCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhcc
Q 007155 462 KVETEASSFH-----DDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGF 513 (615)
Q Consensus 462 eLeseLssfk-----ddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~ 513 (615)
.+...|..+. .||.+++...|.-+-.-|.+|+.....+++.+|..-|-.-++
T Consensus 196 ~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~st~~e~k~d~i~K~~~~~ 252 (254)
T KOG2196|consen 196 QIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNSTQLEKKLDKIKKLKDDH 252 (254)
T ss_pred HHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccc
Confidence 8888887664 345567788888888889999999999999998765544333
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=66.95 E-value=52 Score=38.58 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=30.7
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHhh
Q 007155 99 SAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKR-------EREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEq-------EaeeRisELEkqL~ELeKe~~ 164 (615)
....+.+||.++.+...+++.+.+....++.+...+..++++.+. ...+...+|+.++.+++....
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555544444444444444443332221 222223355555555555543
No 66
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.88 E-value=66 Score=40.06 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=27.3
Q ss_pred HhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhh----hhhccCCCchh
Q 007155 465 TEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATK----RYRGFQIPMDW 519 (615)
Q Consensus 465 seLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~----~~~~~~ip~~w 519 (615)
.++.+.+|+ ..-..+.++--...+.++|..++++++.+.+.+. .|-+-+|.+.=
T Consensus 804 dk~~s~e~~-~~HyE~~~K~~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~ 861 (1074)
T KOG0250|consen 804 DKLRSAEDE-KRHYEDKLKSRLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEA 861 (1074)
T ss_pred HHHhhhhhh-hhhHHHHHHHhhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhc
Confidence 444454443 1333344443334455666667777776665544 44444444443
No 67
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.87 E-value=99 Score=30.36 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q 007155 149 MKEMEQEIEELKKAA 163 (615)
Q Consensus 149 isELEkqL~ELeKe~ 163 (615)
...++.++.+++..-
T Consensus 122 ~~~~~~ki~e~~~ki 136 (177)
T PF07798_consen 122 QAKQELKIQELNNKI 136 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 68
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.61 E-value=1.1e+02 Score=28.54 Aligned_cols=66 Identities=26% Similarity=0.316 Sum_probs=40.3
Q ss_pred HHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 98 ASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 98 Ea~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
+.+..|..|..++.....++..++...+.....+..........+...+..+.+++.++.+|..+-
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777777777777666666666655555555555555555555555555555443
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=66.50 E-value=90 Score=31.56 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=17.7
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Q 007155 79 LRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELS 120 (615)
Q Consensus 79 Leerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~L 120 (615)
++.-...+++.+.+ |-...++.+..|..++.+..+..+..
T Consensus 7 He~af~~iK~YYnd--IT~~NL~lIksLKeei~emkk~e~~~ 46 (201)
T PF13851_consen 7 HEKAFQEIKNYYND--ITLNNLELIKSLKEEIAEMKKKEERN 46 (201)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444 44444445554444444444433333
No 70
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=66.28 E-value=89 Score=27.38 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.3
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 104 PVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.++|..+.+...|+..++..+.+|+.....++...+
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888999999999999999999988887776665
No 71
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.26 E-value=2e+02 Score=36.63 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHhhcccc-ChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchh--------hHHH
Q 007155 395 GDFIRYLIKEVESAAFT-DIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLK--------KVET 465 (615)
Q Consensus 395 ~k~IkkL~kELrvld~k-d~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~--------eLes 465 (615)
.+.|..+..|+-.++.+ +.++|...-..+.+.+..|.+...+|.+-.-.-.+.+-|-..+..-+.-. .+..
T Consensus 1491 p~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~e 1570 (1758)
T KOG0994|consen 1491 PDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVE 1570 (1758)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45566777777666643 55667666666666666666666666655422222222222211111110 0000
Q ss_pred hhcc----c--cCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhccCCCchhhhhhhhHHHHHHHHH
Q 007155 466 EASS----F--HDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKLASV 534 (615)
Q Consensus 466 eLss----f--kddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ip~~wm~d~gi~~~ik~~sv 534 (615)
.|.. . -.+.-.-.+.-+.-++.+|+||+.++++.|++=..+..+-.++ | +.|..+|...+
T Consensus 1571 aL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL-----~----~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1571 ALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL-----E----TRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H----HHHHHHHHHHH
Confidence 0000 0 0000001122344567788999999999998888888887776 3 55555555444
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=65.55 E-value=1.1e+02 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
..+..|+.++.+++...+.+-+-+-+-.+++..|+..+.
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~ 106 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQ 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 455566666666665555544333333444444444444
No 73
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.39 E-value=1.2e+02 Score=33.04 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHhHhHhHHHHHH
Q 007155 67 PDVAELLRLVEELRERESLLKTELVEHK 94 (615)
Q Consensus 67 pevlElLRrVeeLeerls~Lr~Efle~k 94 (615)
...-.+++++..|++.+.+||.+....+
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~ 187 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLK 187 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456688889999999999999886643
No 74
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.00 E-value=1.3e+02 Score=33.69 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHH----HHHHHHHHHHhh
Q 007155 69 VAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESL----QCENERLKEMLE 139 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EEL----EeE~~rLk~eLd 139 (615)
...++..+.++++...+|...+...+ ......+..+...|.....-.+.+++.++++ +.|+..|+.+|.
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk--~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa 286 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLK--EQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELA 286 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666666666655554422 1122222333333333333344444444443 445556666664
No 75
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.95 E-value=82 Score=32.58 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 95 LVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 95 lekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+-++++..+..||+.+.....++..+.+..+.+...+..|..++.
T Consensus 86 LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 86 LAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444444444443333
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=64.51 E-value=1.7e+02 Score=30.20 Aligned_cols=55 Identities=29% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKK 161 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeK 161 (615)
+.++..++...+.+.+.+...+.++..|.++++..+.-..+-...|..++..|+.
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555543333333333445555555544
No 77
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=64.35 E-value=31 Score=31.97 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=31.2
Q ss_pred HHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 98 ASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 98 Ea~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+-.+.+..||.++.+...++..++..+.++.++|..|+-+-+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677788888888888888888888888777777665544
No 78
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.70 E-value=1.1e+02 Score=32.57 Aligned_cols=8 Identities=25% Similarity=0.472 Sum_probs=3.1
Q ss_pred hHhHhHHH
Q 007155 84 SLLKTELV 91 (615)
Q Consensus 84 s~Lr~Efl 91 (615)
.+||..|.
T Consensus 169 ~WLR~~L~ 176 (269)
T PF05278_consen 169 DWLRSKLE 176 (269)
T ss_pred HHHHHHHH
Confidence 33444333
No 79
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=63.26 E-value=1.1e+02 Score=35.80 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=25.0
Q ss_pred hhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHhh
Q 007155 103 VPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKM---KEMEQEIEELKKAAS 164 (615)
Q Consensus 103 l~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRi---sELEkqL~ELeKe~~ 164 (615)
+..||.++......+..+.+....+..++.+|...|.....+.++.+ .+++..++.|.....
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33334444333333333344444444444444444443332222222 344455555544443
No 80
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.83 E-value=49 Score=31.99 Aligned_cols=12 Identities=50% Similarity=0.648 Sum_probs=4.8
Q ss_pred HHHHHHHHhHhH
Q 007155 76 VEELRERESLLK 87 (615)
Q Consensus 76 VeeLeerls~Lr 87 (615)
+.+|..++..++
T Consensus 81 i~~L~~el~~l~ 92 (169)
T PF07106_consen 81 IKELREELAELK 92 (169)
T ss_pred HHHHHHHHHHHH
Confidence 444444433333
No 81
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=61.75 E-value=1.6e+02 Score=28.52 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=9.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 114 NTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~eL 138 (615)
..+++.++..++.+..++..+..+|
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333333
No 82
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.50 E-value=2.1e+02 Score=29.80 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=17.1
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELE 118 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE 118 (615)
..+++.-..++..++-. +.+|. ..|.+++++...+..|..
T Consensus 10 ~~~lek~k~~i~~e~~~--~e~ee-~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 10 TLELEKLKNEILQEVES--LENEE-KCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444444444444433 22232 344455444444444433
No 83
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=61.17 E-value=1.5e+02 Score=34.55 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=55.8
Q ss_pred HHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHH--------HHHHHHHHHHHHhhh---hHHHHHHH
Q 007155 80 RERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIE--------SLQCENERLKEMLEQ---NKREREKK 148 (615)
Q Consensus 80 eerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~E--------ELEeE~~rLk~eLde---eEqEaeeR 148 (615)
++.+..|..+|-. ++++|..||.|...+..++..++.... -.+.++...+..+++ ...+++..
T Consensus 41 K~El~~LNDRLA~------YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 41 KKELQELNDRLAV------YIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555433 578999999999999999998876432 246677777766663 44566666
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 007155 149 MKEMEQEIEELKKAASER 166 (615)
Q Consensus 149 isELEkqL~ELeKe~~~~ 166 (615)
+..|+.++.+|.+.....
T Consensus 115 i~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 777777777777777653
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=61.11 E-value=1.3e+02 Score=37.01 Aligned_cols=28 Identities=21% Similarity=0.246 Sum_probs=15.9
Q ss_pred hhhccCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 007155 509 RYRGFQIPMDWMLETGIVSQIKLASVKLAMKYMKR 543 (615)
Q Consensus 509 ~~~~~~ip~~wm~d~gi~~~ik~~sv~lA~~~~kr 543 (615)
-|+.++==++ |+|+.-| +|--|-.|+=.
T Consensus 827 FY~kNsrWTE-----GLISAaK--AVa~aatvLVe 854 (980)
T KOG0980|consen 827 FYKKNSRWTE-----GLISAAK--AVAWAATVLVE 854 (980)
T ss_pred HHHhcCchhH-----HHHHHHH--HHHHHHHHHHH
Confidence 4666543333 8888877 45445555544
No 85
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=60.80 E-value=1.6e+02 Score=30.24 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHhHHHHHHHHH-------hHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFK-------KIESLQCENERLKEMLEQNK---REREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrE-------k~EELEeE~~rLk~eLdeeE---qEaeeRisELEkqL~ELeKe~ 163 (615)
++.+||.+|......|..+.. ..+.++..+..|..+|.+.+ ..++.++..|+..+..|+...
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444433321 12223334444444444211 233333445555555554443
No 86
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=59.92 E-value=52 Score=36.69 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hhhhhcccccccccch
Q 007155 143 REREKKMKEMEQEIEELKKAASE-RSKVAELSIESDELSS 181 (615)
Q Consensus 143 qEaeeRisELEkqL~ELeKe~~~-~~~~~~~~~~~~~~~s 181 (615)
...+.|+.+|..++.++...+.. .....-+..|.||+=+
T Consensus 52 ~~~~~Ki~elkr~lAd~v~~~k~~~~~~dptG~epdDhl~ 91 (428)
T PF00846_consen 52 SALQDKIAELKRQLADRVAAGKQSAKPVDPTGVEPDDHLK 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCCCCCCchhhh
Confidence 44555666777777766655522 2222334556677633
No 87
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=59.82 E-value=1.5e+02 Score=30.15 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=29.3
Q ss_pred HHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHH
Q 007155 77 EELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 77 eeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EEL 127 (615)
+++......+.++-.. +...+-..+.+|+.++.+..+++..++..+..+
T Consensus 25 ~q~~~~~~~i~~~r~~--l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 25 KQYIQQLEEIQRERQE--LVSRYAKQTSELQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444443 455555677788888888887777766555444
No 88
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.82 E-value=61 Score=37.93 Aligned_cols=67 Identities=30% Similarity=0.228 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 007155 68 DVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQ 140 (615)
Q Consensus 68 evlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLde 140 (615)
+....-|.++++..=.+..+.++.+ ++ .+-.+|..++++.+..+|.+++.+..-+.++..|+.++++
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~e--le----~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTE--LE----VKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 3455666666666555666666655 22 3556777778887777777777777667777777777663
No 89
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=59.33 E-value=90 Score=26.78 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHhHhHH
Q 007155 72 LLRLVEELRERESLLKTEL 90 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Ef 90 (615)
+.+.+.+.++++..|..+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEG 21 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEG 21 (74)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3445556666666655443
No 90
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.31 E-value=1.6e+02 Score=33.40 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=15.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKE 136 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~ 136 (615)
++.++++.+...+..++.+.+....++.++..|..
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444433
No 91
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=58.37 E-value=1.9e+02 Score=33.33 Aligned_cols=49 Identities=16% Similarity=0.199 Sum_probs=20.5
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEME 153 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELE 153 (615)
+++.++.+.+.++..++.....++.++..+..+++.......++...|+
T Consensus 57 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~ 105 (475)
T PRK10361 57 HWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMI 105 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333333333333
No 92
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.24 E-value=2.6e+02 Score=30.20 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=15.0
Q ss_pred CCCCCCCCCCccccccccccccccccCC-CCCCCCCCCC
Q 007155 27 AKPPSPSPSSAKASSQKTAFSRSFGVYF-PRSSAQVQPR 64 (615)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-prs~~qv~~~ 64 (615)
.+|+|+.++|-++|......-|+ |-|- +=.+--|.++
T Consensus 17 s~~SSsnSgS~KgSd~Sp~~rr~-~rY~~C~dNHGikPP 54 (305)
T PF15290_consen 17 STPSSSNSGSCKGSDSSPTMRRS-GRYMSCGDNHGIKPP 54 (305)
T ss_pred CCcccCCCccccCCCCCCCCCCC-CceeecccCCCCCCC
Confidence 33444444444444433333333 3333 4344445444
No 93
>PRK09039 hypothetical protein; Validated
Probab=58.21 E-value=1.6e+02 Score=32.06 Aligned_cols=8 Identities=38% Similarity=0.372 Sum_probs=3.2
Q ss_pred cchhhHHH
Q 007155 335 RRIPEVVE 342 (615)
Q Consensus 335 ~r~p~lv~ 342 (615)
.|+-.|++
T Consensus 291 ~RA~aV~~ 298 (343)
T PRK09039 291 ARAISVVK 298 (343)
T ss_pred HHHHHHHH
Confidence 34444433
No 94
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=58.20 E-value=1.8e+02 Score=33.02 Aligned_cols=84 Identities=10% Similarity=0.224 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh-------hhhHHHHH
Q 007155 74 RLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEML-------EQNKRERE 146 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL-------deeEqEae 146 (615)
.+.++.+.++..+..++.. .+ .....||.+|.+.+.++..++..+-+...++..+...| ...+.+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~--~~----~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r 111 (420)
T COG4942 38 KQLKQIQKEIAALEKKIRE--QQ----DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQER 111 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4455566666666555544 22 34455556666555555555544444444433333333 33332223
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007155 147 KKMKEMEQEIEELKKAA 163 (615)
Q Consensus 147 eRisELEkqL~ELeKe~ 163 (615)
++..-|...+..+...+
T Consensus 112 ~qr~~La~~L~A~~r~g 128 (420)
T COG4942 112 EQRRRLAEQLAALQRSG 128 (420)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33444555555555544
No 95
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=57.76 E-value=1.9e+02 Score=31.35 Aligned_cols=13 Identities=15% Similarity=-0.038 Sum_probs=5.0
Q ss_pred HhHHHHHHHHHHH
Q 007155 87 KTELVEHKLVKAS 99 (615)
Q Consensus 87 r~Efle~klekEa 99 (615)
..+++.-+.|-||
T Consensus 125 ~aRl~ak~~WYeW 137 (312)
T smart00787 125 FARLEAKKMWYEW 137 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344443
No 96
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.70 E-value=73 Score=33.90 Aligned_cols=56 Identities=25% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASER 166 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~~ 166 (615)
+++|..+..+++.+..+..++.+++.+++.++. +...+|.+++..|.+.+.....+
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik----~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIK----KLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333 34444555555555555554443
No 97
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=57.14 E-value=2.2e+02 Score=29.14 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
++..|...+.....+++..++.+.++...+...+..+
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554444433
No 98
>PF15294 Leu_zip: Leucine zipper
Probab=56.88 E-value=2.8e+02 Score=29.83 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=36.5
Q ss_pred cccccccccCCCCCCCCCCCCCCchHHHHH-HHHHHHHHHHhHhHhHHHHHHHHHHHHhhhh---hHHHHHHHhHH
Q 007155 44 TAFSRSFGVYFPRSSAQVQPRPVPDVAELL-RLVEELRERESLLKTELVEHKLVKASAAIVP---VLESEIAAKNT 115 (615)
Q Consensus 44 ~~~~~~~g~~~prs~~qv~~~~spevlElL-RrVeeLeerls~Lr~Efle~klekEa~~kl~---eLE~ELeqkek 115 (615)
..|++++.+.+..+..+-.+=...+..+++ ..+..|+.++..+++++.. +++.+..-+. .|+.+|..+..
T Consensus 101 ~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~--le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 101 QEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKS--LEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred hhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666644444443221111112233444 3377788888888888877 5555443332 44555555444
No 99
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=56.85 E-value=2.1e+02 Score=30.56 Aligned_cols=59 Identities=32% Similarity=0.424 Sum_probs=36.7
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHH-------HHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHH
Q 007155 104 PVLESEIAAKNTELELSFKKIESL-------QCENERLKEMLEQNKREREKKMK---EMEQEIEELKKA 162 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EEL-------EeE~~rLk~eLdeeEqEaeeRis---ELEkqL~ELeKe 162 (615)
..||..++.+..|+|..++.+..| .+|.+++..+|++.-.....+.. -||.++....+.
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456777777777777777766655 55666777777766666666654 344444444433
No 100
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.69 E-value=2.5e+02 Score=29.21 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 007155 152 MEQEIEELKKA 162 (615)
Q Consensus 152 LEkqL~ELeKe 162 (615)
|..++.++.++
T Consensus 93 Lk~~in~~R~e 103 (230)
T PF10146_consen 93 LKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 101
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=56.67 E-value=1e+02 Score=29.48 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=38.0
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQ-CENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELE-eE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
..+..+|.++.+++.+...+......-. ..+..++..++.+..+..+++..|..++.++....
T Consensus 27 ~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L~ 90 (131)
T PF11068_consen 27 EQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKLE 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555555555544332221111 45667778888777888888888888888777654
No 102
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=56.03 E-value=2.3e+02 Score=28.49 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=5.1
Q ss_pred HHHHHHHhHHHHH
Q 007155 106 LESEIAAKNTELE 118 (615)
Q Consensus 106 LE~ELeqkekELE 118 (615)
+|.++.....++.
T Consensus 69 ~E~E~~~~~~el~ 81 (201)
T PF12072_consen 69 LERELKERRKELQ 81 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334433333333
No 103
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=56.02 E-value=33 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=13.1
Q ss_pred hhhHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007155 103 VPVLESEIAAKNTELELSFKKIESLQCENE 132 (615)
Q Consensus 103 l~eLE~ELeqkekELE~LrEk~EELEeE~~ 132 (615)
+.+||+++-.+...++.++.+.+++.+.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve 31 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVE 31 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444444444333333333
No 104
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.86 E-value=1.6e+02 Score=35.54 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=9.4
Q ss_pred CCchHHHHHHHH-HHHHHH
Q 007155 65 PVPDVAELLRLV-EELRER 82 (615)
Q Consensus 65 ~spevlElLRrV-eeLeer 82 (615)
.+.|.++++-+. +.+.++
T Consensus 533 ~~~E~l~lL~~a~~vlree 551 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREE 551 (717)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 456666666552 334433
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.72 E-value=2.4e+02 Score=28.77 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHhHhHHHH
Q 007155 71 ELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle 92 (615)
+++.-+++|+....+|..+..-
T Consensus 5 dL~~~v~dL~~~n~~L~~en~k 26 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAK 26 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHH
Confidence 4444455555555555544433
No 106
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.55 E-value=1.1e+02 Score=28.43 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=6.9
Q ss_pred HHHHHHHHhHhHhHHHH
Q 007155 76 VEELRERESLLKTELVE 92 (615)
Q Consensus 76 VeeLeerls~Lr~Efle 92 (615)
..++..++..|...+-+
T Consensus 11 ~~el~n~La~Le~slE~ 27 (107)
T PF09304_consen 11 QNELQNRLASLERSLED 27 (107)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555444433
No 107
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.52 E-value=89 Score=32.69 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=13.2
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 111 AAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 111 eqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
..++.+++..++.+..++.++.+|..+++
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~ 187 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLK 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 108
>PHA02562 46 endonuclease subunit; Provisional
Probab=54.92 E-value=1.7e+02 Score=33.03 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 007155 75 LVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQN 141 (615)
Q Consensus 75 rVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdee 141 (615)
....++.++..+.....+ ..+....+.++...+...+.++...++.++++..+...++.+++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~---~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDE---LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554444444433 1223334445555555556666655666656556666666666543
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.73 E-value=2.5e+02 Score=28.70 Aligned_cols=47 Identities=28% Similarity=0.306 Sum_probs=23.5
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKE 151 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisE 151 (615)
.+..++......++.+++.++.+..++...++++++.......+...
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444444444333
No 110
>PRK09039 hypothetical protein; Validated
Probab=54.61 E-value=2.5e+02 Score=30.71 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHHh
Q 007155 123 KIESLQCENERLKEML 138 (615)
Q Consensus 123 k~EELEeE~~rLk~eL 138 (615)
+++.|..++..+...|
T Consensus 145 qI~aLr~Qla~le~~L 160 (343)
T PRK09039 145 QIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 111
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.58 E-value=1.6e+02 Score=30.36 Aligned_cols=28 Identities=21% Similarity=0.030 Sum_probs=11.3
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENE 132 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~ 132 (615)
.|..++.+.+.|++.++...+.++..+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333
No 112
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.46 E-value=2.1e+02 Score=27.68 Aligned_cols=8 Identities=38% Similarity=0.401 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007155 76 VEELRERE 83 (615)
Q Consensus 76 VeeLeerl 83 (615)
+..++..+
T Consensus 26 v~~LEreL 33 (140)
T PF10473_consen 26 VESLEREL 33 (140)
T ss_pred HHHHHHHH
Confidence 33343333
No 113
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=54.20 E-value=1.8e+02 Score=32.09 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHHhhhhhhhhchHHHhhhhhccCCCchhh---hhhhhH
Q 007155 490 EKLEHGVYNLSRMRESATKRYRGFQIPMDWM---LETGIV 526 (615)
Q Consensus 490 ~K~e~~v~~l~r~r~~~~~~~~~~~ip~~wm---~d~gi~ 526 (615)
+..|.++.-+.+|+. .-+|||+.- +++|+.
T Consensus 351 s~~E~~grlviKTK~-------~g~ipf~ycL~ii~kGpf 383 (401)
T PF06785_consen 351 SRQERSGRLVIKTKN-------GGNIPFYYCLGIIPKGPF 383 (401)
T ss_pred hhhhhhceEEEEecC-------CCceeeEEEEeecCCcch
Confidence 455555555555553 345666653 455553
No 114
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.76 E-value=1e+02 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=14.0
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 007155 104 PVLESEIAAKNTELELSFKKIESLQCENERLKEM 137 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~e 137 (615)
..||..+.+.-..+..++-.++++.+++..+..+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333444444444444444444433
No 115
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.71 E-value=1.6e+02 Score=31.50 Aligned_cols=62 Identities=11% Similarity=0.235 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
.|..|..++.....+++..++++.+...++..++.+|++.+..-.+|..-|+.++..+..-|
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444555555555555555666666666666666666444444444445555555554444
No 116
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=53.61 E-value=17 Score=35.41 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHhhccccChhhhhhhh-hhhHHHHhHHHhHHHHHhcCCCchHHHHHHHH
Q 007155 394 QGDFIRYLIKEVESAAFTDIEDVVPFV-KWLDDELSYLVDERAVLKHFDWPEQKADALRE 452 (615)
Q Consensus 394 ~~k~IkkL~kELrvld~kd~eeV~~fv-~wvDeeL~~l~de~~VLK~Fp~PekkldaLre 452 (615)
+.+|++.|.+.|+.+...+.+|+..+. .+.|+....-.+|.++++.|..|.+....+..
T Consensus 3 k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 3 KNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999998777777777665 44555554445699999999999997766554
No 117
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=53.53 E-value=91 Score=37.36 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHHHHhHhHhHHHHH-HHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007155 78 ELRERESLLKTELVEH-KLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEI 156 (615)
Q Consensus 78 eLeerls~Lr~Efle~-klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL 156 (615)
.|+..+.+|+.++... .++.|-...+..|++.-.....||..++...++|+..+..|....+ .-.+-+..||+++
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq----~DKq~l~~LEkrL 497 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ----QDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3555666677766332 2345555555555444344455666666666666655555444333 2222345566666
Q ss_pred HHHHHHh
Q 007155 157 EELKKAA 163 (615)
Q Consensus 157 ~ELeKe~ 163 (615)
.+..+..
T Consensus 498 ~eE~~~R 504 (697)
T PF09726_consen 498 AEERRQR 504 (697)
T ss_pred HHHHHHH
Confidence 5555444
No 118
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.43 E-value=1.8e+02 Score=34.51 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 007155 141 NKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 141 eEqEaeeRisELEkqL~ELeKe~ 163 (615)
...+.+.++.+||..+..+....
T Consensus 116 L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 116 LNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666665544
No 119
>PRK15313 autotransport protein MisL; Provisional
Probab=53.29 E-value=25 Score=43.05 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.2
Q ss_pred hhhhccC
Q 007155 508 KRYRGFQ 514 (615)
Q Consensus 508 ~~~~~~~ 514 (615)
.+|+.+|
T Consensus 795 ~~Y~s~G 801 (955)
T PRK15313 795 EKYKSKG 801 (955)
T ss_pred cceeeeE
Confidence 3444444
No 120
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.99 E-value=4e+02 Score=30.43 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhh
Q 007155 70 AELLRLVEELRERESLLKTELVEHKLVKASAAIVP 104 (615)
Q Consensus 70 lElLRrVeeLeerls~Lr~Efle~klekEa~~kl~ 104 (615)
...-++++.|+.++.++|..+.. ..|++-+++.
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~--Aqk~~~ek~~ 281 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSR--AQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34556677788888888887766 3344433433
No 121
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=52.76 E-value=19 Score=35.69 Aligned_cols=39 Identities=28% Similarity=0.293 Sum_probs=16.1
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 96 VKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 96 ekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
++.+|++-..||.|| .|-|.|++..+.|.+|+..|+.++
T Consensus 9 lN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 9 LNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888 333444444444444444444443
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=52.62 E-value=96 Score=30.81 Aligned_cols=22 Identities=41% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhHhHH
Q 007155 69 VAELLRLVEELRERESLLKTEL 90 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Ef 90 (615)
.+++++.-.++..++..+..++
T Consensus 83 Lael~r~~~el~~~L~~~~~~l 104 (194)
T PF08614_consen 83 LAELYRSKGELAQQLVELNDEL 104 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3333344444444444444443
No 123
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.59 E-value=2e+02 Score=32.91 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.+..|++++.+.+.+-.....++.+++..+.++..++.
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555544
No 124
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=52.58 E-value=87 Score=31.01 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=22.8
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKK 148 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeR 148 (615)
+++...+..++..++++++.|+.++..|..++...+.+....
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555566666666666666655555444444433
No 125
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.54 E-value=1.3e+02 Score=37.52 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=15.2
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHhHH
Q 007155 99 SAAIVPVLESEIAAKNTELELSFKKIE 125 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~LrEk~E 125 (615)
....+.+||.++..+.+++..+.+.+.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666666665555444
No 126
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=52.20 E-value=2.1e+02 Score=34.54 Aligned_cols=99 Identities=25% Similarity=0.337 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHH--hhhhhHHHHHHHhHHHHHHHHHh---HHHHHHHHHHHHHHhh-------hh
Q 007155 74 RLVEELRERESLLKTELVEHKLVKASA--AIVPVLESEIAAKNTELELSFKK---IESLQCENERLKEMLE-------QN 141 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efle~klekEa~--~kl~eLE~ELeqkekELE~LrEk---~EELEeE~~rLk~eLd-------ee 141 (615)
...+.++.+-.+|+.++-+.|. +|.. .-..+||.+...+.+++..++.. ++.+..++.+|.++++ +.
T Consensus 69 ~~~~~~e~~~~~lr~e~ke~K~-rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 69 KECEDLELERKRLREEIKEYKF-REARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666777777766663 4432 23447888887777877777653 3333444444444443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccc
Q 007155 142 KREREKKMKEMEQEIEELKKAASER-SKVAELS 173 (615)
Q Consensus 142 EqEaeeRisELEkqL~ELeKe~~~~-~~~~~~~ 173 (615)
.+=.+.--.+||.-+..|+.+.+-+ .-.++++
T Consensus 148 ~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 148 ARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111246777777777776433 3344443
No 127
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.18 E-value=1.6e+02 Score=35.82 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHhHhHhHH-----HHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHhHHHH-------HHHHHHH
Q 007155 69 VAELLRL-VEELRERESLLKTEL-----VEHKLVKASAAIVP-VLESEIAAKNTELELSFKKIESL-------QCENERL 134 (615)
Q Consensus 69 vlElLRr-VeeLeerls~Lr~Ef-----le~klekEa~~kl~-eLE~ELeqkekELE~LrEk~EEL-------EeE~~rL 134 (615)
++.+||| +.-|.+++-.-.+.- .++.++-.++.-+. -|+++|....+.+|.++.+.++| .+|+.++
T Consensus 395 ENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~ 474 (861)
T PF15254_consen 395 ENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRL 474 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007155 135 KEMLEQNKREREKKMKEMEQEIEELKKAASERSK 168 (615)
Q Consensus 135 k~eLdeeEqEaeeRisELEkqL~ELeKe~~~~~~ 168 (615)
...+.+++.+..+.....+.++.-++.+...+..
T Consensus 475 ~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~ 508 (861)
T PF15254_consen 475 RKMFQEKDQELLENKQQFDIETTRIKIEVEEALV 508 (861)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 128
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=51.80 E-value=1.1e+02 Score=34.51 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=10.4
Q ss_pred CcccccchhhHHHHHHhhhh
Q 007155 330 GPAKVRRIPEVVEFYHSLMR 349 (615)
Q Consensus 330 ~~~~v~r~p~lv~~y~sL~~ 349 (615)
|+..+-..|++.++-..|++
T Consensus 413 AtaTisakPqi~N~kaElT~ 432 (487)
T KOG4672|consen 413 ATATISAKPQIRNLKAELTR 432 (487)
T ss_pred cccceecchhccccchHHHh
Confidence 33345556666655554443
No 129
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=51.55 E-value=1.7e+02 Score=37.32 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=20.7
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 100 AAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+.+...|+.+|..+..+++.+++.+.++..++..+..+++
T Consensus 880 l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~ 919 (1311)
T TIGR00606 880 LQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3344455555555555555555555555544444444444
No 130
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.47 E-value=2.2e+02 Score=26.96 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEM 137 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~e 137 (615)
.+..++.++..++..++.+++.+++++.++..+..+
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555554444444444433333
No 131
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=51.30 E-value=1.7e+02 Score=36.71 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=10.8
Q ss_pred hhhhcccCCCCCCCC
Q 007155 6 VRMAMGLQKSPANPK 20 (615)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (615)
+...||+.+-|++-+
T Consensus 608 a~~~m~s~~~p~n~~ 622 (1074)
T KOG0250|consen 608 AREFMQSDKPPANVT 622 (1074)
T ss_pred HHHHHhcCCCCccce
Confidence 456788888777665
No 132
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.22 E-value=2.5e+02 Score=32.70 Aligned_cols=43 Identities=21% Similarity=0.098 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccchhh
Q 007155 141 NKREREKKMKEMEQEIEELKKAASERSKVAELSIESDELSSSQ 183 (615)
Q Consensus 141 eEqEaeeRisELEkqL~ELeKe~~~~~~~~~~~~~~~~~~ss~ 183 (615)
+..|.+.+-.++..++.+.+.+..+--.|..+-..++..-++.
T Consensus 276 E~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~~~ 318 (596)
T KOG4360|consen 276 ELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALSHG 318 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHHhh
Confidence 4445555555555555555555544334444544445444444
No 133
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=51.07 E-value=62 Score=32.47 Aligned_cols=27 Identities=7% Similarity=0.072 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhhccccChhhhhhhhhh
Q 007155 396 DFIRYLIKEVESAAFTDIEDVVPFVKW 422 (615)
Q Consensus 396 k~IkkL~kELrvld~kd~eeV~~fv~w 422 (615)
+.|..=|.+.+.++..+.+.|..|+..
T Consensus 7 ~~I~~AD~qgRYLs~~eL~~L~~~~~~ 33 (177)
T CHL00172 7 RVVTNSDAKAAYVGGSDLQALKKFISE 33 (177)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 345556677777777777888887743
No 134
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=51.02 E-value=54 Score=34.22 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=47.5
Q ss_pred hhhHHHHHHhhhhccccCCC--CCCCCCCCCcchhhHhHHHHHHhhhhhhhhhhcccccchhhHHHHHHHHhhccccChh
Q 007155 337 IPEVVEFYHSLMRRDSRRDS--GAGQSEVLPATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIE 414 (615)
Q Consensus 337 ~p~lv~~y~sL~~r~~~~~~--~~~~s~~~~~k~~~~DL~~ELenrSs~l~aiK~DVEd~~k~IkkL~kELrvld~kd~e 414 (615)
+.++.+|++.-++|.+..-. ...++.+.....-++.||.+|...|.--.+. .+.++...+-...++++-.-...+++
T Consensus 5 ~~~~~n~d~~~~~r~a~~~p~q~~~~~~~~~~~~~vd~lF~~L~aifPa~~a~-~~~~~~~~aKr~Wi~~f~engI~t~e 83 (233)
T PF06992_consen 5 AEQMQNRDREQLRRMANNMPEQYDEKAQVEQAAKLVDRLFRQLKAIFPAWRAN-PDQEELNEAKRQWIKAFAENGITTME 83 (233)
T ss_pred HHHHHhccHHHHHHHHccCCccccccchHHHHHHHHHHHHHHHHHhCchhccC-CCHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 45777888877777653211 1112222222234567777777766654344 33333333333445666655555555
Q ss_pred hhh------------------hhhhhhHHH
Q 007155 415 DVV------------------PFVKWLDDE 426 (615)
Q Consensus 415 eV~------------------~fv~wvDee 426 (615)
+|. .||.||-..
T Consensus 84 Qv~~Gm~~aR~~~spF~PS~GqFI~WCk~~ 113 (233)
T PF06992_consen 84 QVRAGMRRARASESPFWPSPGQFIAWCKPG 113 (233)
T ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHhcc
Confidence 543 588998754
No 135
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=51.02 E-value=2.9e+02 Score=32.40 Aligned_cols=15 Identities=27% Similarity=0.736 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhcC
Q 007155 538 MKYMKRVSAELETVG 552 (615)
Q Consensus 538 ~~~~krv~~e~~~~~ 552 (615)
+.||+|.-..|+.+.
T Consensus 444 ~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 444 LEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHhh
Confidence 356666555565543
No 136
>PRK02224 chromosome segregation protein; Provisional
Probab=50.83 E-value=2.5e+02 Score=33.92 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=5.1
Q ss_pred CCCchhHhHHH
Q 007155 576 GGFDVETMRAF 586 (615)
Q Consensus 576 GG~d~~~~~af 586 (615)
+|+|......|
T Consensus 822 ~~lD~~~~~~~ 832 (880)
T PRK02224 822 VFLDSGHVSQL 832 (880)
T ss_pred ccCCHHHHHHH
Confidence 45555444333
No 137
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.82 E-value=1.9e+02 Score=36.13 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhhhhhhh
Q 007155 583 MRAFQELRDKARSCHIQ 599 (615)
Q Consensus 583 ~~af~el~~~~~~~~~~ 599 (615)
|=.|+|+=.-...+|.|
T Consensus 1107 lYILDEVDAALDLSHTQ 1123 (1174)
T KOG0933|consen 1107 LYILDEVDAALDLSHTQ 1123 (1174)
T ss_pred eeehhhhHHhhcchhhh
Confidence 33456666666666666
No 138
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=50.57 E-value=1.9e+02 Score=31.90 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=38.9
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 106 LESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 106 LE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
|+.+..+...+++.|-...+++|.++ ..++-...+|...||.+|...+..+....
T Consensus 156 L~~e~~~~~~qlE~~v~~K~~~E~~L---~~KF~~vLNeKK~KIR~lq~~L~~~~~~~ 210 (342)
T PF06632_consen 156 LESEANKLLKQLEKFVNAKEEHEEDL---YAKFVLVLNEKKAKIRELQRLLASAKEEE 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 45666677777877777766666554 33444566788889999999988887643
No 139
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.43 E-value=3.2e+02 Score=28.60 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHH
Q 007155 122 KKIESLQCENERLKEMLEQNKREREKK---MKEMEQEIEELKKA 162 (615)
Q Consensus 122 Ek~EELEeE~~rLk~eLdeeEqEaeeR---isELEkqL~ELeKe 162 (615)
..+..++.++..++..+.....+.... ...|+.+|....+.
T Consensus 262 ~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 262 AEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444444444444444333333322 23455555554443
No 140
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=50.42 E-value=54 Score=31.33 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=13.0
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
.|+.++..+..|+..+++++.++...|..
T Consensus 98 kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~ 126 (131)
T PF04859_consen 98 KLEAELRAKDSEIDRLREKLDELNRANKS 126 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333
No 141
>PRK02224 chromosome segregation protein; Provisional
Probab=50.22 E-value=2.7e+02 Score=33.62 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 007155 149 MKEMEQEIEELKK 161 (615)
Q Consensus 149 isELEkqL~ELeK 161 (615)
+.+++.++.++..
T Consensus 574 ~~~~~~~~~~l~~ 586 (880)
T PRK02224 574 VAELNSKLAELKE 586 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 142
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.87 E-value=1.6e+02 Score=36.51 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=9.9
Q ss_pred hhhhhhhhhhHHHHhHH
Q 007155 414 EDVVPFVKWLDDELSYL 430 (615)
Q Consensus 414 eeV~~fv~wvDeeL~~l 430 (615)
+++.+.|-|++..+..+
T Consensus 840 edl~~~i~~l~~~~~ea 856 (1243)
T KOG0971|consen 840 EDLRKHITWLVAVLQEA 856 (1243)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666655443
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.70 E-value=2.5e+02 Score=33.36 Aligned_cols=34 Identities=35% Similarity=0.397 Sum_probs=14.5
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
.|+.++..+..+++.++..++.|+.++..+.+++
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 144
>PLN02372 violaxanthin de-epoxidase
Probab=49.37 E-value=2.3e+02 Score=32.11 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=9.2
Q ss_pred HHHHHHhhhhhHHHHHHHhHH
Q 007155 95 LVKASAAIVPVLESEIAAKNT 115 (615)
Q Consensus 95 lekEa~~kl~eLE~ELeqkek 115 (615)
|.+|...+..++|.+.....+
T Consensus 377 i~~e~~~~~~e~~~~v~~~~~ 397 (455)
T PLN02372 377 IVKEARQIEEELEKEVEKLGK 397 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 145
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=48.92 E-value=1.7e+02 Score=33.21 Aligned_cols=15 Identities=7% Similarity=-0.135 Sum_probs=8.8
Q ss_pred hhhhhhhhhhhHHHH
Q 007155 413 IEDVVPFVKWLDDEL 427 (615)
Q Consensus 413 ~eeV~~fv~wvDeeL 427 (615)
..-...|+-|+.=-|
T Consensus 518 ~~s~~t~~p~~~Psl 532 (552)
T KOG2129|consen 518 HPSSCTSHPQVAPSL 532 (552)
T ss_pred CccccccCcccCchh
Confidence 345566677766544
No 146
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.91 E-value=2.9e+02 Score=28.78 Aligned_cols=67 Identities=27% Similarity=0.351 Sum_probs=33.3
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE---QNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd---eeEqEaeeRisELEkqL~ELeKe~ 163 (615)
.++-.++-.|+.++.....+...|.....+++..+.+|..... +.......++.+++..+..|....
T Consensus 29 ~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~ 98 (246)
T PF00769_consen 29 EESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEES 98 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777666666666666666666655554332 222333334444444444444433
No 147
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=48.90 E-value=1.7e+02 Score=32.19 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 007155 110 IAAKNTELELSFKKIESLQCENERLKEMLEQ 140 (615)
Q Consensus 110 LeqkekELE~LrEk~EELEeE~~rLk~eLde 140 (615)
..+...-+..+.....++..++..+..-|..
T Consensus 331 a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ 361 (388)
T PF04912_consen 331 AAEFSQTLSELESQQSDLQSQLKKWEELLNK 361 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444443
No 148
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=48.81 E-value=2.5e+02 Score=29.90 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007155 71 ELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMK 150 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRis 150 (615)
++-.|.+.|...+.++....++ .+.-++.++..|=.+-.....-++.+.- ....++..++.+|++-+.....++.
T Consensus 10 el~~h~~~L~~~N~~L~~~Iqd--tE~st~~~Vr~lLqqy~~~~~~i~~le~---~~~~~l~~ak~eLqe~eek~e~~l~ 84 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQD--TEDSTALKVRKLLQQYDIYRTAIDILEY---SNHKQLQQAKAELQEWEEKEESKLS 84 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHh--HHhhHHHHHHHHHHHHHHHHHHHHHHHc---cChHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444556666666666666665 5555656666541111111222222211 1133345555566655555556667
Q ss_pred HHHHHHHHHHHHhhh
Q 007155 151 EMEQEIEELKKAASE 165 (615)
Q Consensus 151 ELEkqL~ELeKe~~~ 165 (615)
.|+.++.+|+..-..
T Consensus 85 ~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 85 KLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766544
No 149
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=48.78 E-value=2.7e+02 Score=35.37 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=20.8
Q ss_pred ccchhhHHHhhcccc--CCC-CCchHHHHHHHHHHHHHHHh
Q 007155 457 YFDLKKVETEASSFH--DDA-RQPCGLAFKKMQALLEKLEH 494 (615)
Q Consensus 457 Y~dL~eLeseLssfk--ddp-~~P~~~aLkKm~~~l~K~e~ 494 (615)
|..|..+......|+ ++. .+|-+..+..|..+++-|..
T Consensus 1045 w~~Lk~F~~~~~~w~~~~~~~~lP~e~~~~~l~~l~~~l~~ 1085 (1201)
T PF12128_consen 1045 WKPLKQFSDEYELWRSSDGSRELPSEEYVNALRELLDILPS 1085 (1201)
T ss_pred HHHHHHHHHHHHHHhcccCcccCCCHHHHHHHHHHHHHHhh
Confidence 455566666666673 222 36766566655555554433
No 150
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.67 E-value=2.1e+02 Score=34.01 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCchHHHHHHHHHHHHHHHhHhHhHHHH
Q 007155 65 PVPDVAELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 65 ~spevlElLRrVeeLeerls~Lr~Efle 92 (615)
|+..+..++..++.|++++..+..++..
T Consensus 78 pse~E~~Lq~E~~~L~kElE~L~~qlqa 105 (617)
T PF15070_consen 78 PSEVEQQLQAEAEHLRKELESLEEQLQA 105 (617)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445566666666666666655543
No 151
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.64 E-value=2.7e+02 Score=32.75 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=17.4
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHhHHHH
Q 007155 99 SAAIVPVLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~LrEk~EEL 127 (615)
++-+|-+||++|.+++.++..-++..+.+
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777777777666655444443
No 152
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=48.60 E-value=97 Score=37.43 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 007155 59 AQVQPRP 65 (615)
Q Consensus 59 ~qv~~~~ 65 (615)
-.|+|||
T Consensus 797 ~kvk~gp 803 (1106)
T KOG0162|consen 797 EKVKNGP 803 (1106)
T ss_pred hhhhcCc
Confidence 4566663
No 153
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=48.44 E-value=3e+02 Score=31.71 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=9.0
Q ss_pred hHHHHHHHhHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFK 122 (615)
Q Consensus 105 eLE~ELeqkekELE~LrE 122 (615)
+++.-|.+++.|++.+..
T Consensus 450 Emdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 450 EMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHhhhhHHHHHHHHH
Confidence 445555555555554443
No 154
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=48.43 E-value=1.5e+02 Score=28.78 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=29.2
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
.+..|+.+|.+.+++|+.|++. ...+..|+.++++...+..+...+.+.++.++....
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ 85 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDS 85 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777666652 113344444444444444444444555555444443
No 155
>PRK00106 hypothetical protein; Provisional
Probab=48.12 E-value=3.5e+02 Score=31.63 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 007155 534 VKLAMKYMKRVSAEL 548 (615)
Q Consensus 534 v~lA~~~~krv~~e~ 548 (615)
+.||+.-.+++-.||
T Consensus 500 ~~la~~ia~~Ie~~~ 514 (535)
T PRK00106 500 TILAHKVREKIENNL 514 (535)
T ss_pred HHHHHHHHHHHHHhC
Confidence 344444444443333
No 156
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=47.18 E-value=36 Score=37.94 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=35.6
Q ss_pred ChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhc-ccchhhHH
Q 007155 412 DIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFG-YFDLKKVE 464 (615)
Q Consensus 412 d~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~-Y~dL~eLe 464 (615)
++++|..-|..+|+.....-....+++.+|.++. ...|+++... ...|...+
T Consensus 95 ~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE-~~~l~~~~~~~~~~L~~~E 147 (432)
T smart00498 95 SYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEE-LKKLREYKEEDPEELARAE 147 (432)
T ss_pred CHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHH-HHHHHHhcccchhhcchHH
Confidence 5678888888888765555557889999997777 6777776433 34444333
No 157
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.13 E-value=2.5e+02 Score=33.90 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhHhHhHHHH-HHHHHHHH-hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 72 LLRLVEELRERESLLKTELVE-HKLVKASA-AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle-~klekEa~-~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
..+-.+.|-+-...++++++. +..-++.+ .++..|..+..+.-.++..+++..+.+++...+|.++++
T Consensus 534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e 603 (717)
T PF10168_consen 534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYE 603 (717)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666667777533 22222222 233344444444444555554444444444334443333
No 158
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=47.02 E-value=29 Score=36.44 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=6.3
Q ss_pred chhhHhHHHHHH
Q 007155 367 TSNARDMIGEIE 378 (615)
Q Consensus 367 k~~~~DL~~ELe 378 (615)
--.|.|+|..|.
T Consensus 237 ~PnMldVLKDmn 248 (253)
T PF05308_consen 237 VPNMLDVLKDMN 248 (253)
T ss_pred CccHHHHHHhhh
Confidence 344556665554
No 159
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.83 E-value=4.8e+02 Score=33.38 Aligned_cols=64 Identities=22% Similarity=0.359 Sum_probs=35.4
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE------QNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd------eeEqEaeeRisELEkqL~ELe 160 (615)
.+...++++|++++.....++..+....+.++.++..+...+. +..++.+..+.+|++++.+++
T Consensus 809 ~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~q 878 (1293)
T KOG0996|consen 809 RKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQ 878 (1293)
T ss_pred HHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777776666666665555555555555554433 122344444555555555554
No 160
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=46.79 E-value=78 Score=35.23 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 007155 535 KLAMKYMKR 543 (615)
Q Consensus 535 ~lA~~~~kr 543 (615)
-+|+-|--|
T Consensus 421 YvALTYDHR 429 (457)
T KOG0559|consen 421 YVALTYDHR 429 (457)
T ss_pred EEEeecccc
Confidence 455555555
No 161
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.59 E-value=1.4e+02 Score=31.26 Aligned_cols=26 Identities=8% Similarity=0.105 Sum_probs=13.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 114 NTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
..|.|.||.+..+||+++......+.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~ 110 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTIS 110 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444333
No 162
>PRK11546 zraP zinc resistance protein; Provisional
Probab=45.93 E-value=1.2e+02 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=16.1
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELS 120 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~L 120 (615)
+++......|-.+|..++.||..+
T Consensus 57 ~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 57 NDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666777778878887765
No 163
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.76 E-value=98 Score=29.95 Aligned_cols=12 Identities=58% Similarity=0.983 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 007155 149 MKEMEQEIEELK 160 (615)
Q Consensus 149 isELEkqL~ELe 160 (615)
+.+|+.++.+|.
T Consensus 118 i~~l~~e~~~l~ 129 (169)
T PF07106_consen 118 IEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 164
>PRK03918 chromosome segregation protein; Provisional
Probab=45.75 E-value=2.8e+02 Score=33.34 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=9.2
Q ss_pred CCCchhHhHHHHHH
Q 007155 576 GGFDVETMRAFQEL 589 (615)
Q Consensus 576 GG~d~~~~~af~el 589 (615)
+|+|....+.+.++
T Consensus 823 ~~lD~~~~~~l~~~ 836 (880)
T PRK03918 823 PFLDEERRRKLVDI 836 (880)
T ss_pred cccCHHHHHHHHHH
Confidence 78888776555443
No 165
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.42 E-value=2.2e+02 Score=25.29 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=35.1
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 100 AAIVPVLESEIAAKNTELELSFKKIESLQCENERLKE------MLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~------eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
++.+-+|..+..+...+++.++.+...+..++..+.. .+...-.+....+.++|.++.+++....
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666555544443 1222333444455556666555555443
No 166
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.02 E-value=2e+02 Score=32.88 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=18.1
Q ss_pred CchHHHHHHHHHHHHHHHhHhHhHHHH
Q 007155 66 VPDVAELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 66 spevlElLRrVeeLeerls~Lr~Efle 92 (615)
++++.++..++++++.++..+..+...
T Consensus 70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 70 PERLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777666544
No 167
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.94 E-value=1.5e+02 Score=35.59 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=28.0
Q ss_pred chhhHHHHHHhhhhccccCCCCCCCCCCCCcchhhHhHHHHHHhhhhhh
Q 007155 336 RIPEVVEFYHSLMRRDSRRDSGAGQSEVLPATSNARDMIGEIENRSAHL 384 (615)
Q Consensus 336 r~p~lv~~y~sL~~r~~~~~~~~~~s~~~~~k~~~~DL~~ELenrSs~l 384 (615)
-||.|+..|.-|.+|...-. .+-..-.+.+.+++|+.+++.+-.+
T Consensus 398 gypKLl~~a~gL~kRl~~~~----p~~~~~~ke~l~a~~ap~e~aylSk 442 (797)
T KOG2211|consen 398 GYPKLLQTADGLTKRLPAES----PSVTAIQKETLDAIVAPVENAYLSK 442 (797)
T ss_pred chHHHHHHHHhHHHHhhccc----CCccccHHHHHHHHHHHHHHHHHHH
Confidence 46667777777766654311 1122446788899999998854443
No 168
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=44.72 E-value=4e+02 Score=28.40 Aligned_cols=18 Identities=6% Similarity=0.241 Sum_probs=7.7
Q ss_pred hhhhHHHHHHHhHHHHHH
Q 007155 102 IVPVLESEIAAKNTELEL 119 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~ 119 (615)
.+..|+.++.+.+..+..
T Consensus 82 ~l~~Lq~ql~~l~akI~k 99 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQK 99 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 169
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.62 E-value=3e+02 Score=34.56 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 95 LVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 95 lekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
..+...+.+..||+...+...+.+. ++.+++.++..+..+++
T Consensus 763 ~~k~~~~~i~~lE~~~~d~~~~re~---rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 763 ALKKCEDKISTLEKKMKDAKANRER---RLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhHh---HHHHHHHHHHHHHHHHH
Confidence 3455556666666555554333331 33334444444444444
No 170
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.59 E-value=3e+02 Score=29.44 Aligned_cols=10 Identities=30% Similarity=0.172 Sum_probs=4.2
Q ss_pred HHHHhhhhhH
Q 007155 97 KASAAIVPVL 106 (615)
Q Consensus 97 kEa~~kl~eL 106 (615)
++.+..|.+|
T Consensus 152 ~e~~~~l~DL 161 (269)
T PF05278_consen 152 KEMIATLKDL 161 (269)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 171
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=44.18 E-value=4.8e+02 Score=28.84 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=28.3
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EEL 127 (615)
++++.+...+++.++. .++++..++.+-+...|.-+..|+..++.+
T Consensus 210 ~e~~~~~e~qlK~ql~------lY~aKyeefq~tl~KSNE~F~~fK~E~ekm 255 (391)
T KOG1850|consen 210 LEEMKQVEGQLKEQLA------LYMAKYEEFQTTLAKSNELFTKFKQEMEKM 255 (391)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5666666666665543 466777777777666665555555555444
No 172
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=43.88 E-value=82 Score=27.46 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=22.6
Q ss_pred HHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhH
Q 007155 78 ELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKI 124 (615)
Q Consensus 78 eLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~ 124 (615)
++....+.++.+++. .+..+.-++.++..++++..+++.+++.+
T Consensus 25 d~~~~~~~lk~Klq~---ar~~i~~lpgi~~s~eeq~~~i~~Le~~i 68 (83)
T PF07544_consen 25 DLDTATGSLKHKLQK---ARAAIRELPGIDRSVEEQEEEIEELEEQI 68 (83)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHhCCCccCCHHHHHHHHHHHHHHH
Confidence 344455555555554 33445555555555555555555444433
No 173
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=43.80 E-value=4.4e+02 Score=28.40 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=44.5
Q ss_pred HHHHHHHHhcccchhhHHHhh---ccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhh
Q 007155 447 ADALREAAFGYFDLKKVETEA---SSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATK 508 (615)
Q Consensus 447 ldaLreaa~~Y~dL~eLeseL---ssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~ 508 (615)
.+.|..+...|..|.+-...| ..|+..+ .-.+.+|.+|..++.+++.-..++...|+.-..
T Consensus 136 VeLL~laa~fi~~Le~~LetIrwip~~~~~~-~~m~~aL~ki~~lvae~E~l~e~ilkwRe~~ke 199 (277)
T PF15003_consen 136 VELLELAASFIEKLEEHLETIRWIPNFDENP-SNMDKALAKIDALVAECEELAEQILKWREQQKE 199 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777776555443 4555443 567899999999999999999999988875443
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=43.66 E-value=64 Score=33.81 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+..+||.++.+...++..++.+++.+..+|.+|-+++.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888888888888888888888888887777
No 175
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=43.45 E-value=4.8e+02 Score=30.71 Aligned_cols=10 Identities=60% Similarity=0.820 Sum_probs=6.2
Q ss_pred CCCCCC-CCCC
Q 007155 266 RVPRVP-NPPP 275 (615)
Q Consensus 266 r~~r~~-~pp~ 275 (615)
+.+||. +|..
T Consensus 215 ~~~~~~~~p~~ 225 (582)
T PF03276_consen 215 RQPRVSYNPFL 225 (582)
T ss_pred cCCccccCCCC
Confidence 667776 4544
No 176
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=43.43 E-value=4.8e+02 Score=28.57 Aligned_cols=14 Identities=7% Similarity=0.375 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 007155 149 MKEMEQEIEELKKA 162 (615)
Q Consensus 149 isELEkqL~ELeKe 162 (615)
+.-|-+++..|...
T Consensus 180 vN~L~Kqm~~l~~e 193 (310)
T PF09755_consen 180 VNRLWKQMDKLEAE 193 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 177
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.21 E-value=2.6e+02 Score=27.98 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=14.8
Q ss_pred CCchHHHHHHHHHHHHHHHhHhHhHHHH
Q 007155 65 PVPDVAELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 65 ~spevlElLRrVeeLeerls~Lr~Efle 92 (615)
|+.+...++...+.|...+..++.+..+
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~ 87 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEE 87 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666665555555433
No 178
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=43.06 E-value=7.3e+02 Score=30.59 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=4.1
Q ss_pred chhhHHHHHH
Q 007155 336 RIPEVVEFYH 345 (615)
Q Consensus 336 r~p~lv~~y~ 345 (615)
+-++|++.=+
T Consensus 515 ~W~~Il~~V~ 524 (824)
T PRK07764 515 RWPEILAAVP 524 (824)
T ss_pred HHHHHHHHHh
Confidence 3344444333
No 179
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=43.04 E-value=1.4e+02 Score=28.45 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=3.8
Q ss_pred HHHHhHHHHH
Q 007155 109 EIAAKNTELE 118 (615)
Q Consensus 109 ELeqkekELE 118 (615)
+|..+.++++
T Consensus 77 dIi~kakqIe 86 (144)
T PF11221_consen 77 DIIRKAKQIE 86 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 180
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=42.94 E-value=3.2e+02 Score=31.80 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=24.5
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHh
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk 123 (615)
++.+.++...++..+++... ..=.-+..||.+|...+.++..|.+.
T Consensus 138 i~~l~~~y~~lrk~ll~~~~--~~G~a~~~Le~~L~~ie~~F~~f~~l 183 (560)
T PF06160_consen 138 IEELKEKYRELRKELLAHSF--SYGPAIEELEKQLENIEEEFSEFEEL 183 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544221 11123446677777777777766543
No 181
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.88 E-value=3.2e+02 Score=26.39 Aligned_cols=101 Identities=16% Similarity=0.188 Sum_probs=51.5
Q ss_pred hhhhhhhhhhhHHHHhHHHhH-HHHHhcCCCchHHHHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHH
Q 007155 413 IEDVVPFVKWLDDELSYLVDE-RAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEK 491 (615)
Q Consensus 413 ~eeV~~fv~wvDeeL~~l~de-~~VLK~Fp~PekkldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K 491 (615)
..++..+++-++..|..+..- ..+++ .-+..+..|.+|......|..........+..++.++...+++
T Consensus 6 f~~~~~~v~~le~~l~~l~~~~~~~~k----------~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~ 75 (218)
T cd07596 6 FEEAKDYILKLEEQLKKLSKQAQRLVK----------RRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEE 75 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 345566666666666554311 12222 2223333444444444444444332112477888888888888
Q ss_pred HHhhhhhhhhchHHHhhhhhccCCCchhhhhhhhHHHHHH
Q 007155 492 LEHGVYNLSRMRESATKRYRGFQIPMDWMLETGIVSQIKL 531 (615)
Q Consensus 492 ~e~~v~~l~r~r~~~~~~~~~~~ip~~wm~d~gi~~~ik~ 531 (615)
+-...+.+. ..-.-.|+-|.+.++ |++.-+|.
T Consensus 76 ~~~~~~~~~------~~~~~~~~e~L~~y~--~~~~s~k~ 107 (218)
T cd07596 76 LSSLSEAQA------NQELVKLLEPLKEYL--RYCQAVKE 107 (218)
T ss_pred HHHHHHHHH------HHHHHHHHhHHHHHH--HHHHHHHH
Confidence 777666553 233445555655543 44444444
No 182
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=42.80 E-value=3.5e+02 Score=32.80 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhh-hH-------HHHHHHhHHHHHHHHH-------hHHHHHHHHHH
Q 007155 69 VAELLRLVEELRERESLLKTELVEHKLVKASAAIVP-VL-------ESEIAAKNTELELSFK-------KIESLQCENER 133 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~-eL-------E~ELeqkekELE~LrE-------k~EELEeE~~r 133 (615)
+..+..++.+|+..+.+++..+...+-+++-+..+. +| |.+...+..|+..++. .+.+|+++|..
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENis 108 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENIS 108 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445666677777777777777766555554333222 22 3333333444433321 13345777766
Q ss_pred HHHHhh
Q 007155 134 LKEMLE 139 (615)
Q Consensus 134 Lk~eLd 139 (615)
|...+-
T Consensus 109 lQKqvs 114 (717)
T PF09730_consen 109 LQKQVS 114 (717)
T ss_pred HHHHHH
Confidence 665543
No 183
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=42.71 E-value=72 Score=25.56 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHH
Q 007155 447 ADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRES 505 (615)
Q Consensus 447 ldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~ 505 (615)
+..|+.+....-.|.++..-+.-|.+ +..+|.....-+..-++.|+..+..|.++++.
T Consensus 4 L~~I~~~r~lGfsL~eI~~~l~l~~~-~~~~~~~~~~~l~~~~~~i~~~i~~L~~~~~~ 61 (65)
T PF09278_consen 4 LQFIRRLRELGFSLEEIRELLELYDQ-GDPPCADRRALLEEKLEEIEEQIAELQALRAQ 61 (65)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHCCS-HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666555544443 66799999999999999999999999888764
No 184
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=42.55 E-value=3.7e+02 Score=34.01 Aligned_cols=24 Identities=13% Similarity=0.410 Sum_probs=13.9
Q ss_pred CCCchhHhHHHHHHHHHhhhhhhh
Q 007155 576 GGFDVETMRAFQELRDKARSCHIQ 599 (615)
Q Consensus 576 GG~d~~~~~af~el~~~~~~~~~~ 599 (615)
|-.+-.++.-|+++.++...-..|
T Consensus 962 g~VN~~Aiee~e~~~~r~~~l~~~ 985 (1163)
T COG1196 962 GPVNLRAIEEYEEVEERYEELKSQ 985 (1163)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHH
Confidence 555556666666666665554444
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=42.53 E-value=3.9e+02 Score=27.33 Aligned_cols=26 Identities=31% Similarity=0.176 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 114 NTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+.|++.++.....+++++..|.....
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~r 91 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQAR 91 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544444444443
No 186
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=42.42 E-value=2.8e+02 Score=27.45 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=28.4
Q ss_pred CCCCCCchHHHH-HHHHHHHHHHHhHhHhHHHHHH-HHHHHHhhhhhHHHHHHHhHHHH
Q 007155 61 VQPRPVPDVAEL-LRLVEELRERESLLKTELVEHK-LVKASAAIVPVLESEIAAKNTEL 117 (615)
Q Consensus 61 v~~~~spevlEl-LRrVeeLeerls~Lr~Efle~k-lekEa~~kl~eLE~ELeqkekEL 117 (615)
|-+|-.++++++ -.|++..+.++.++.-.+.+++ ...+....|-.||++++++.+..
T Consensus 37 ve~g~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~ly 95 (157)
T COG3352 37 VENGIDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLY 95 (157)
T ss_pred cccCCChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666653 4556667777776666664422 22333333334444444433333
No 187
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.18 E-value=3.1e+02 Score=33.78 Aligned_cols=61 Identities=21% Similarity=0.360 Sum_probs=38.9
Q ss_pred hhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 103 VPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE-------QNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 103 l~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd-------eeEqEaeeRisELEkqL~ELeKe~ 163 (615)
+..||.++..++.++..+.....+++.+...|+.-+. +.+.|.+.....|++.+++|-...
T Consensus 94 v~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 94 VNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKA 161 (1265)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 4467888888888888888777777777766665443 333444444455555555555444
No 188
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=42.03 E-value=3.7e+02 Score=26.94 Aligned_cols=59 Identities=31% Similarity=0.422 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
.+..+|..|.+.+..|+.-.+.++..+..+......|+........+..+++..+.+..
T Consensus 79 el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~ 137 (201)
T PF12072_consen 79 ELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQ 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666665555544444444444444444544444444444444444443333
No 189
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.76 E-value=5.7e+02 Score=28.96 Aligned_cols=25 Identities=4% Similarity=0.213 Sum_probs=15.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 136 EMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 136 ~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
+.+++....+..++.-||.+.++.+
T Consensus 349 RdIqEalEscqtrisKlEl~qq~qq 373 (455)
T KOG3850|consen 349 RDIQEALESCQTRISKLELQQQQQQ 373 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777877776665433
No 190
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.64 E-value=3.1e+02 Score=35.16 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=8.3
Q ss_pred CCCchhHhHHHHH
Q 007155 576 GGFDVETMRAFQE 588 (615)
Q Consensus 576 GG~d~~~~~af~e 588 (615)
.|+|..+...|.+
T Consensus 1234 ~~lD~~~~~~l~~ 1246 (1311)
T TIGR00606 1234 TNLDRENIESLAH 1246 (1311)
T ss_pred ccCCHHHHHHHHH
Confidence 6777777665543
No 191
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.55 E-value=4.2e+02 Score=27.86 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=25.4
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
....+|.++..+..++|+++...+.+.++...+++-|.
T Consensus 87 ~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44556777777777777777766666666666666555
No 192
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.03 E-value=1.8e+02 Score=30.72 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=20.9
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Q 007155 79 LRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELS 120 (615)
Q Consensus 79 Leerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~L 120 (615)
..+++..|+.++.. +. +.+.+||.++.....+|+..
T Consensus 178 a~eki~~Lr~~y~~--l~----~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 178 AREKIAALRQRYNQ--LS----NSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHH--HH----HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544 21 35666777777766676654
No 193
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=41.02 E-value=59 Score=39.05 Aligned_cols=12 Identities=42% Similarity=0.603 Sum_probs=5.4
Q ss_pred CCCCCC-CCchHH
Q 007155 59 AQVQPR-PVPDVA 70 (615)
Q Consensus 59 ~qv~~~-~spevl 70 (615)
.=|++| +-+...
T Consensus 501 ~vvlpG~~g~~~~ 513 (759)
T PF05518_consen 501 AVVLPGDPGPTTG 513 (759)
T ss_pred ceeecCCCCCCCc
Confidence 445555 334433
No 194
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=40.96 E-value=2.5e+02 Score=30.78 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 111 AAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 111 eqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+++-.++|.++++.+.++.++..+..+.+
T Consensus 129 e~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 129 EDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666555555544444333
No 195
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=40.60 E-value=3.7e+02 Score=26.54 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHH
Q 007155 113 KNTELELSFKKIESLQCENERLKEMLEQNKRER 145 (615)
Q Consensus 113 kekELE~LrEk~EELEeE~~rLk~eLdeeEqEa 145 (615)
..+|++.+++.++....++..|..-+++.+.|.
T Consensus 82 ~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEy 114 (159)
T PF04949_consen 82 MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEY 114 (159)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466667777777666666666665555444433
No 196
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=40.54 E-value=3.5e+02 Score=29.63 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=35.0
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQE 155 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkq 155 (615)
..+++.+...++..| +.++.+-|.++...++++.. ...+|++.-+++....+.++.+||..
T Consensus 332 ~~e~qrkEee~rqmF---------vqrvkekE~elke~Ekel~~----------kf~~lkr~h~eEk~kle~~rr~Leee 392 (406)
T KOG3859|consen 332 LGELQRKEEEMRQMF---------VQRVKEKEAELKEAEKELHE----------KFDRLKRLHQEEKKKLEEKRKQLEEE 392 (406)
T ss_pred HHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444444 33455445555554444432 22233333344445555666677777
Q ss_pred HHHHHHHhh
Q 007155 156 IEELKKAAS 164 (615)
Q Consensus 156 L~ELeKe~~ 164 (615)
+..+.+...
T Consensus 393 ~~~f~~rk~ 401 (406)
T KOG3859|consen 393 VNAFQRRKT 401 (406)
T ss_pred HHHHHHHHH
Confidence 776665543
No 197
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=40.15 E-value=3.6e+02 Score=26.23 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhHhHhH
Q 007155 74 RLVEELRERESLLKTE 89 (615)
Q Consensus 74 RrVeeLeerls~Lr~E 89 (615)
..+++....+..++..
T Consensus 56 ~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 56 EKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 198
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.87 E-value=4e+02 Score=26.68 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 115 TELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 115 kELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.++..+++..++++.++..++..++
T Consensus 127 ~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 127 EEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443
No 199
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=39.82 E-value=3.8e+02 Score=31.51 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.8
Q ss_pred hchHHHhhhhhccCCCchhhhhhhhHHHHHH
Q 007155 501 RMRESATKRYRGFQIPMDWMLETGIVSQIKL 531 (615)
Q Consensus 501 r~r~~~~~~~~~~~ip~~wm~d~gi~~~ik~ 531 (615)
|+=-+..++|...|++++=|..-|.||=||.
T Consensus 391 rlV~~iA~ky~~~gl~~~DLiQeG~iGL~~A 421 (619)
T PRK05658 391 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 421 (619)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 4445567899999999988888888876654
No 200
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.49 E-value=2.4e+02 Score=29.23 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 007155 154 QEIEELK 160 (615)
Q Consensus 154 kqL~ELe 160 (615)
++.+.+.
T Consensus 186 Kq~e~~~ 192 (216)
T KOG1962|consen 186 KQSEGLQ 192 (216)
T ss_pred HHHHHcc
Confidence 3333333
No 201
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=39.48 E-value=4e+02 Score=34.05 Aligned_cols=6 Identities=0% Similarity=-0.535 Sum_probs=2.3
Q ss_pred ccchhh
Q 007155 187 GLVEVS 192 (615)
Q Consensus 187 ~~~~~~ 192 (615)
++.++.
T Consensus 603 l~al~r 608 (1293)
T KOG0996|consen 603 LDALMR 608 (1293)
T ss_pred HHHHHH
Confidence 333343
No 202
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=39.13 E-value=1e+02 Score=28.75 Aligned_cols=39 Identities=28% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLK 135 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk 135 (615)
||-.+.+..||.++..+-.|+..+++.+.++-+++..|+
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344467778888888888888888888887777766554
No 203
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=38.98 E-value=2e+02 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=13.6
Q ss_pred ccchhhhcccCCCCCCCC
Q 007155 3 AGKVRMAMGLQKSPANPK 20 (615)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (615)
+|-||+..|.-+++.+..
T Consensus 192 ~g~vr~~~~~~~~~~~~h 209 (832)
T KOG2077|consen 192 EGFVRVTDAPNKSEISKH 209 (832)
T ss_pred cCeeEeeccccccccccc
Confidence 577888888877777665
No 204
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=38.67 E-value=3.1e+02 Score=29.40 Aligned_cols=46 Identities=17% Similarity=0.087 Sum_probs=26.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 007155 64 RPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAA 112 (615)
Q Consensus 64 ~~spevlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeq 112 (615)
+-+|-+.+.|.+..-.++ |+|++.---|+.+-.++++..||...+.
T Consensus 193 pispid~e~qe~~kleRk---rlrnreaa~Kcr~rkLdrisrLEdkv~~ 238 (279)
T KOG0837|consen 193 PISPIDMEDQEKIKLERK---RLRNREAASKCRKRKLDRISRLEDKVKT 238 (279)
T ss_pred CCCcccchhHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334556677766544443 3666654445666666666666555444
No 205
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.58 E-value=2.9e+02 Score=24.70 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=3.2
Q ss_pred hHhHhHHHH
Q 007155 84 SLLKTELVE 92 (615)
Q Consensus 84 s~Lr~Efle 92 (615)
..+...+.+
T Consensus 23 ~~l~~~~~E 31 (105)
T cd00632 23 QKVEAQLNE 31 (105)
T ss_pred HHHHHHHHH
Confidence 333333333
No 206
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=38.50 E-value=5e+02 Score=30.35 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=34.8
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 109 EIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 109 ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
.|...+.+.+.+.+.+.+....+.+|+++|...+.-.+..+..|-.++..|+.....
T Consensus 449 rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~ 505 (518)
T PF10212_consen 449 RLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555566666677777766677777777777777777665543
No 207
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.28 E-value=2.5e+02 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=18.3
Q ss_pred CCCchHHHHHHHHHHHHHHHhHhHhHHH
Q 007155 64 RPVPDVAELLRLVEELRERESLLKTELV 91 (615)
Q Consensus 64 ~~spevlElLRrVeeLeerls~Lr~Efl 91 (615)
|..=|+.-+.|...+|+..+..+.....
T Consensus 93 ~~dwEevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 93 GTDWEEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666667788887777665543
No 208
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.26 E-value=3.8e+02 Score=33.96 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred hhhHhHHHHHHhhhhhhhhhhcccccchhhHHHHHHHHhh
Q 007155 368 SNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVES 407 (615)
Q Consensus 368 ~~~~DL~~ELenrSs~l~aiK~DVEd~~k~IkkL~kELrv 407 (615)
..+-+-+.++..++.++..-+.|++...+.+...+.++..
T Consensus 966 ~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 966 LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667777777777766666655544444444444433
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.97 E-value=1.4e+02 Score=31.31 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=14.5
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
+|.++|.++..|+..||-.+|++..++..
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455555555555555444444444433
No 210
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=37.89 E-value=2.2e+02 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=12.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007155 134 LKEMLEQNKREREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 134 Lk~eLdeeEqEaeeRisELEkqL~ELeKe 162 (615)
++.+++..-.+.......+...|..+.+.
T Consensus 43 ~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 43 LKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433334444444444444444444
No 211
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=37.67 E-value=1.8e+02 Score=35.09 Aligned_cols=45 Identities=27% Similarity=0.353 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Q 007155 73 LRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSF 121 (615)
Q Consensus 73 LRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~Lr 121 (615)
..+...|+.++..+..++.. -.+ .+.++++|.+|.+.++++-..+
T Consensus 111 eekn~slqerLelaE~~l~q--s~r--ae~lpeveael~qr~~al~~ae 155 (916)
T KOG0249|consen 111 EEKNRSLQERLELAEPKLQQ--SLR--AETLPEVEAELAQRNAALTKAE 155 (916)
T ss_pred HHhhhhhhHHHHHhhHhhHh--HHh--hhhhhhhHHHHHHHHHHHHHHH
Confidence 33445566666666555533 223 3567777777777666655443
No 212
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.64 E-value=4.1e+02 Score=30.23 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=24.0
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHH-HHhhhhhHHHHHHHhHHHHHHHHHh
Q 007155 76 VEELRERESLLKTELVEHKLVKA-SAAIVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekE-a~~kl~eLE~ELeqkekELE~LrEk 123 (615)
..+-.++.+.+..+..-...+-+ ..+++.++|.+|..+.+|...+.+.
T Consensus 22 laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 22 LAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555433222222 1234445577777766666665543
No 213
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.53 E-value=4.5e+02 Score=26.59 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007155 143 REREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 143 qEaeeRisELEkqL~ELeKe 162 (615)
.+.+.++..|+.++.-..+.
T Consensus 135 ~~~~~ki~~Lek~leL~~k~ 154 (194)
T PF15619_consen 135 QEKEKKIQELEKQLELENKS 154 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 34555555555555544443
No 214
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.08 E-value=90 Score=35.78 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 007155 521 LETGIVSQIKLASVKLAMKYMKR 543 (615)
Q Consensus 521 ~d~gi~~~ik~~sv~lA~~~~kr 543 (615)
+-.|+.+=+-.+.=+||.=|+||
T Consensus 361 ~~~g~g~G~s~aa~~LadyYik~ 383 (475)
T PRK13729 361 LKMGIGGGASKAAQTLSDYYIKR 383 (475)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHH
Confidence 33455555555566777777777
No 215
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=37.07 E-value=60 Score=31.59 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhHHHHHHhhhhccccCCCCCCCCCCCCcchhhHhHHHHHH
Q 007155 299 PPPPPSAPKPLPAPAKSAPPPPPPPPKGLRAGPAKVRRIPEVVEFYHSLMRRDSRRDSGAGQSEVLPATSNARDMIGEIE 378 (615)
Q Consensus 299 ~p~pp~~p~~~~~~~~~~ppppppP~~~~~~~~~~v~r~p~lv~~y~sL~~r~~~~~~~~~~s~~~~~k~~~~DL~~ELe 378 (615)
|||+..||....++++.+..+.||.+..........+-...+...+..|.+-.... .....+....|+=..|.
T Consensus 3 Ppp~~~P~s~~~~~Pp~~~~~~PP~~~~~~~~~~~p~~~~~i~~~~~~L~~v~~~~-------~~~~~kr~~~D~~KRL~ 75 (157)
T PF07304_consen 3 PPPPSLPPSQAPPPPPQPSGPVPPASPPVDPSSIPPEDEQPIEEVLRELQRVLEAC-------PPSIKKRVVDDIEKRLN 75 (157)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHHH-------HTTS-HHHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHc-------ccccchhHHHHHHHHHH
Q ss_pred hhhhhhhhhhccccc-chhhHHHHHHHHhhccccChhhh--hhhhhhhHHHHhHHHhHHHHHh
Q 007155 379 NRSAHLLAIKTDVET-QGDFIRYLIKEVESAAFTDIEDV--VPFVKWLDDELSYLVDERAVLK 438 (615)
Q Consensus 379 nrSs~l~aiK~DVEd-~~k~IkkL~kELrvld~kd~eeV--~~fv~wvDeeL~~l~de~~VLK 438 (615)
-=|.++.. .++.. ..+-+..|..+|..=|+..+.+| ...++++|+.=.=++-...||.
T Consensus 76 iLfd~ln~--g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~h~~E~~~WmvGVKRLI~ 136 (157)
T PF07304_consen 76 ILFDHLNN--GKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTDHVDECGNWMVGVKRLIA 136 (157)
T ss_dssp HHHHHHHH--T-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHSSHHHHTTTHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccHHHhhhHHHHHHHHHH
No 216
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.00 E-value=2.8e+02 Score=24.13 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 007155 115 TELELSFKKIESLQCENERLK 135 (615)
Q Consensus 115 kELE~LrEk~EELEeE~~rLk 135 (615)
.|++.++++...+..+...+.
T Consensus 25 mEieELKEknn~l~~e~q~~q 45 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQ 45 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHH
Confidence 344455555544444444333
No 217
>PRK10698 phage shock protein PspA; Provisional
Probab=36.62 E-value=4.9e+02 Score=26.72 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=14.6
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 106 LESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 106 LE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.+..+..+..+++......+.|...+..|+.++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443
No 218
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.34 E-value=3.5e+02 Score=33.28 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=20.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 133 RLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 133 rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
-++..|..+..+.+++..++..++++|+.....
T Consensus 277 ~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~ 309 (1265)
T KOG0976|consen 277 AKNSVLGDELSQKEELVKELQEELDTLKQTRTR 309 (1265)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666677777777777666554
No 219
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.29 E-value=63 Score=25.38 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 112 AKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 112 qkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
|.+.+++.+++-.+.|.++|.+|+.+++
T Consensus 2 QTEvdCe~LKrcce~LteeNrRL~ke~~ 29 (44)
T smart00340 2 QTEVDCELLKRCCESLTEENRRLQKEVQ 29 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888889888887776
No 220
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.24 E-value=2.4e+02 Score=22.99 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENE 132 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~ 132 (615)
.+.+||..+..+..+.+.+++.+..+..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333
No 221
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=35.88 E-value=1.9e+02 Score=28.10 Aligned_cols=17 Identities=41% Similarity=0.413 Sum_probs=6.8
Q ss_pred HHHHHHHhHHHHHHHHH
Q 007155 116 ELELSFKKIESLQCENE 132 (615)
Q Consensus 116 ELE~LrEk~EELEeE~~ 132 (615)
..+.++.++++++..+.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 222
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.75 E-value=4.3e+02 Score=30.86 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=7.4
Q ss_pred chhhHhHHHHHHh
Q 007155 367 TSNARDMIGEIEN 379 (615)
Q Consensus 367 k~~~~DL~~ELen 379 (615)
.....+||.+|..
T Consensus 473 qqDka~lierivr 485 (613)
T KOG0992|consen 473 QQDKADLIERIVR 485 (613)
T ss_pred hhhhHHHHHHHHH
Confidence 3336677777643
No 223
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.74 E-value=2.4e+02 Score=32.07 Aligned_cols=10 Identities=20% Similarity=0.601 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 007155 144 EREKKMKEME 153 (615)
Q Consensus 144 EaeeRisELE 153 (615)
+++++|.+|+
T Consensus 173 ~aE~~i~El~ 182 (542)
T KOG0993|consen 173 KAEQRIDELS 182 (542)
T ss_pred hHHHHHHHHH
Confidence 4444444444
No 224
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.36 E-value=1.4e+02 Score=34.34 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhccCCCchhhhhhhh
Q 007155 480 LAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWMLETGI 525 (615)
Q Consensus 480 ~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ip~~wm~d~gi 525 (615)
.+++|+..|.-|+-+.+.-++.+ .-|+.++++.-.|+
T Consensus 371 ~aa~~LadyYik~Aeq~~PVIEi---------~aGr~V~iVf~kGf 407 (475)
T PRK13729 371 KAAQTLSDYYIKRAEQYHPVIPI---------GAGNEVTVVFQDGF 407 (475)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEe---------CCCCEEEEEEeCCe
Confidence 45667777776666666555432 23555666555554
No 225
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=35.22 E-value=34 Score=41.20 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=17.8
Q ss_pred hhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhh
Q 007155 461 KKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVY 497 (615)
Q Consensus 461 ~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~ 497 (615)
..+..++.++....++-.+.....|..+..+++.-..
T Consensus 666 ~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~ 702 (833)
T KOG1922|consen 666 LKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKR 702 (833)
T ss_pred hcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555554445555555555555444444333
No 226
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=35.17 E-value=6.4e+02 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHhHhHHHH
Q 007155 70 AELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 70 lElLRrVeeLeerls~Lr~Efle 92 (615)
..+..++..|++++..++.++-.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ 45 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELET 45 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 45566677777776666666543
No 227
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.97 E-value=4.5e+02 Score=31.08 Aligned_cols=27 Identities=7% Similarity=0.082 Sum_probs=14.6
Q ss_pred chhhHHHHHHHHhhccccChhhhhhhh
Q 007155 394 QGDFIRYLIKEVESAAFTDIEDVVPFV 420 (615)
Q Consensus 394 ~~k~IkkL~kELrvld~kd~eeV~~fv 420 (615)
+.+.|..+++.|+.+.-+++.++.+-|
T Consensus 440 ~e~evq~l~~kl~llekasla~l~~ev 466 (772)
T KOG0999|consen 440 YEKEVQELVEKLRLLEKASLAELEKEV 466 (772)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhHHHH
Confidence 344466666777766555544443333
No 228
>PRK12705 hypothetical protein; Provisional
Probab=34.96 E-value=6.7e+02 Score=29.20 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.6
Q ss_pred chhHhHHHHHHHHHh
Q 007155 579 DVETMRAFQELRDKA 593 (615)
Q Consensus 579 d~~~~~af~el~~~~ 593 (615)
|.++..+-.++++++
T Consensus 469 D~~~~~la~~Ia~~I 483 (508)
T PRK12705 469 DAQATLLARDIAKKI 483 (508)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444455555555543
No 229
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.92 E-value=6.1e+02 Score=32.09 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=11.7
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQ 128 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELE 128 (615)
.|+.+|...+.+|+.+++++.++.
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444443
No 230
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.90 E-value=4.6e+02 Score=29.03 Aligned_cols=20 Identities=10% Similarity=0.356 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhHhHhHH
Q 007155 71 ELLRLVEELRERESLLKTEL 90 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Ef 90 (615)
+---|+++.+.....+...+
T Consensus 217 DWR~hleqm~~~~~~I~~~~ 236 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESAL 236 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 33334444444333333333
No 231
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.82 E-value=4e+02 Score=31.40 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhc
Q 007155 480 LAFKKMQALLEKLEHGVYNLSRM 502 (615)
Q Consensus 480 ~aLkKm~~~l~K~e~~v~~l~r~ 502 (615)
.+++.-.++..|....|..+++.
T Consensus 584 ~~~~~~~~~~~k~~~ev~~~~~~ 606 (654)
T KOG4809|consen 584 ETHKPSNETVTKGSTEVTLAECL 606 (654)
T ss_pred HHhhhhhhHHHhhHHHHHHHHHH
Confidence 34444445555555555555443
No 232
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.81 E-value=7.1e+02 Score=29.44 Aligned_cols=65 Identities=28% Similarity=0.367 Sum_probs=31.5
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHH-----------HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 99 SAAIVPVLESEIAAKNTELELSF-----------KKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~Lr-----------Ek~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
...++..++.++...+..++..+ .+++.|++++..++-.+.....+++++...-|..++++...+
T Consensus 458 ~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~~~ 533 (581)
T KOG0995|consen 458 KIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVATG 533 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554444433 334444555444444444445555555554444444444443
No 233
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.32 E-value=6e+02 Score=27.63 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhH-------------HHHHHHHHhHHHH
Q 007155 61 VQPRPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKN-------------TELELSFKKIESL 127 (615)
Q Consensus 61 v~~~~spevlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqke-------------kELE~LrEk~EEL 127 (615)
+.+| ...-.+.+.++.|..- +.+..++.-.+++-+..+.+|+.++..+. .+++.++....++
T Consensus 103 ~~~~--~~~~~ler~i~~Le~~---~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~ 177 (294)
T COG1340 103 NLGG--RSIKSLEREIERLEKK---QQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREI 177 (294)
T ss_pred hccC--CCHHHHHHHHHHHHHH---HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 128 QCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 128 EeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
-..+..|..+.+ +.-..+..+-....++.+..+.
T Consensus 178 ~eki~~la~eaq----e~he~m~k~~~~~De~Rkeade 211 (294)
T COG1340 178 HEKIQELANEAQ----EYHEEMIKLFEEADELRKEADE 211 (294)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
No 234
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=34.13 E-value=3.7e+02 Score=27.37 Aligned_cols=49 Identities=12% Similarity=0.323 Sum_probs=37.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhccCCCch---hhhhhh
Q 007155 476 QPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMD---WMLETG 524 (615)
Q Consensus 476 ~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ip~~---wm~d~g 524 (615)
...-..+..|...+.++......+..........-.++|++.+ -|||.|
T Consensus 144 ~s~kk~~eei~~~i~~~~~~~~~~~~~~~~i~~~A~~~~l~~~~yi~~l~~g 195 (215)
T PF07083_consen 144 YSLKKIEEEIDDQIDKIKQDLEEIKAAKQAIEEKAEEYGLPADPYIRMLDYG 195 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcC
Confidence 4566688889999999999888888877777777788999843 345553
No 235
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=33.91 E-value=97 Score=35.20 Aligned_cols=65 Identities=29% Similarity=0.378 Sum_probs=34.3
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 99 SAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQ--NKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLde--eEqEaeeRisELEkqL~ELeKe~~ 164 (615)
++.+|+|||.|+..++.......+ +..|+.....+...++. ...+....+.++..++.++.....
T Consensus 320 T~~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (448)
T PF05761_consen 320 TAAIIPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMK 386 (448)
T ss_dssp EEEE-TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 467999999998887766554333 44444444444433331 223333344555555555555543
No 236
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=33.83 E-value=5.3e+02 Score=27.87 Aligned_cols=15 Identities=13% Similarity=0.437 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHh
Q 007155 149 MKEMEQEIEELKKAA 163 (615)
Q Consensus 149 isELEkqL~ELeKe~ 163 (615)
+.+||.++..|+...
T Consensus 118 ~seleeKkrkieeeR 132 (291)
T KOG4466|consen 118 ISELEEKKRKIEEER 132 (291)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 237
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.58 E-value=2.4e+02 Score=28.31 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 007155 149 MKEMEQEIEELKK 161 (615)
Q Consensus 149 isELEkqL~ELeK 161 (615)
..+|+.++.+|.+
T Consensus 112 l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 112 LEELKKELKELKK 124 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 238
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=33.55 E-value=2.6e+02 Score=26.21 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=29.0
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007155 104 PVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe 162 (615)
..|-.++..++.+++.+++.+.+.|+....-+......-.|...++..||.-+..++..
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566666666666665554444433222222222225555566666555555433
No 239
>smart00338 BRLZ basic region leucin zipper.
Probab=33.55 E-value=2.6e+02 Score=22.74 Aligned_cols=35 Identities=34% Similarity=0.334 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKE 136 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~ 136 (615)
.+.+||.++..+..+.+.|...+..++.++..|+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555455544444443
No 240
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.48 E-value=1.9e+02 Score=33.01 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHhhhhhH---HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 97 KASAAIVPVL---ESEIAAKNTELELSFKKIESLQCENERLKEMLEQ--------NKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 97 kEa~~kl~eL---E~ELeqkekELE~LrEk~EELEeE~~rLk~eLde--------eEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
++-+..+..| |+.|.+..++|+..+++.....-+...|.+++++ +--|++...++||..-.+|++..-+
T Consensus 245 ~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L~kAEke 324 (575)
T KOG4403|consen 245 NKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444 8888888888887777665555555555555541 1123333334666555555543322
Q ss_pred hhhhhcccccccccchhhhccccchhh
Q 007155 166 RSKVAELSIESDELSSSQRFQGLVEVS 192 (615)
Q Consensus 166 ~~~~~~~~~~~~~~~ss~~~~~~~~~~ 192 (615)
+|+.. |.|+--++|-.+.
T Consensus 325 --------le~nS-~wsaP~aLQ~wLq 342 (575)
T KOG4403|consen 325 --------LEANS-SWSAPLALQKWLQ 342 (575)
T ss_pred --------HHhcc-CCCCcHHHHHHHH
Confidence 12233 5566555665543
No 241
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.41 E-value=3.6e+02 Score=31.38 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 007155 478 CGLAFKKMQALLEKLEHGVY 497 (615)
Q Consensus 478 ~~~aLkKm~~~l~K~e~~v~ 497 (615)
...||+.+...|++++-+++
T Consensus 535 Y~~al~~~~~alE~vePG~~ 554 (569)
T PRK04778 535 YKAALEIIATALEKVEPGVT 554 (569)
T ss_pred hHHHHHHHHHHHHhhCCcHH
Confidence 56788888888888887755
No 242
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.16 E-value=5.1e+02 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=11.6
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 104 PVLESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
..++.++.....+++.+....+.+...+..+
T Consensus 94 ~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 94 ADLEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 243
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=33.09 E-value=2.7e+02 Score=27.63 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhccCCCchh
Q 007155 449 ALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDW 519 (615)
Q Consensus 449 aLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ip~~w 519 (615)
..++....|.++......+.....+ .++..+|.++...++++......+ +..-+..|+.++++
T Consensus 53 ~~~~l~~~~~e~~~~~~~la~~E~~--~~l~~~l~~l~~~~~~~~~~~~~~------a~~~~~~l~~~L~e 115 (236)
T PF09325_consen 53 RRQELASALAEFGSSFSQLAKSEEE--KSLSEALSQLAEAFEKISELLEEQ------ANQEEETLGEPLRE 115 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCC--chhHHHHHHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHH
Confidence 3444555556666555666655544 578899999999999988765443 44455566666665
No 244
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.08 E-value=5.2e+02 Score=26.89 Aligned_cols=20 Identities=50% Similarity=0.542 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 007155 129 CENERLKEMLEQNKREREKK 148 (615)
Q Consensus 129 eE~~rLk~eLdeeEqEaeeR 148 (615)
+++..+..+++..+.+.+.+
T Consensus 151 ~~~~~~~~~~~kL~~el~~~ 170 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKK 170 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHH
Confidence 33333333333333333333
No 245
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=32.99 E-value=6.5e+02 Score=27.87 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=34.8
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 007155 106 LESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEE 158 (615)
Q Consensus 106 LE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~E 158 (615)
+...|.+..+.+..-+.+...+.++|..|..++.+.-.....++..+++++..
T Consensus 114 fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ 166 (391)
T KOG1850|consen 114 FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQK 166 (391)
T ss_pred HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666677777778888877776666666666666555543
No 246
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=32.99 E-value=5.6e+02 Score=26.34 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=59.4
Q ss_pred cChhhhhhhhhhhHHHHhHHHhHHHHHhcCC--CchHHHHHHHHHHh----cccchhhHHHhhccccCCCCCchHHHHHH
Q 007155 411 TDIEDVVPFVKWLDDELSYLVDERAVLKHFD--WPEQKADALREAAF----GYFDLKKVETEASSFHDDARQPCGLAFKK 484 (615)
Q Consensus 411 kd~eeV~~fv~wvDeeL~~l~de~~VLK~Fp--~PekkldaLreaa~----~Y~dL~eLeseLssfkddp~~P~~~aLkK 484 (615)
-+=+|++.++.-.|+.+...-|....+-.+. -|+..-+.+.+... .+..+.+....|...... ...+.+
T Consensus 77 ~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~-----~~~~~~ 151 (217)
T COG1392 77 FDREDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLES-----ADRLLE 151 (217)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHH
Confidence 3558899999888888766655554444444 44332222222211 111112222222211111 335566
Q ss_pred HHHHHHHHHhhhhhhhhchHHHhhhhhccCCC--chhhhhhhhHHHH
Q 007155 485 MQALLEKLEHGVYNLSRMRESATKRYRGFQIP--MDWMLETGIVSQI 529 (615)
Q Consensus 485 m~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ip--~~wm~d~gi~~~i 529 (615)
|...++++|+..+.+.| ...-+=|...+.+ ++||.=..|+.+|
T Consensus 152 i~~eI~~~E~e~D~i~~--~l~k~Lf~~e~~~~~~~~~~~~~i~~~i 196 (217)
T COG1392 152 IIKEIEALEHECDDIQR--ELLKKLFSLETEINPIDVIILKEIIEKI 196 (217)
T ss_pred HHHHHHHHHHHhhHHHH--HHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 77778888888888876 3333355555555 7776555555444
No 247
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.88 E-value=6.4e+02 Score=29.84 Aligned_cols=57 Identities=26% Similarity=0.285 Sum_probs=27.1
Q ss_pred chHHHHHHH-HHHHHHHHhHhHhHHHHHHHHHHHHh-hhhhHHHHHHHhHHHHHHHHHh
Q 007155 67 PDVAELLRL-VEELRERESLLKTELVEHKLVKASAA-IVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 67 pevlElLRr-VeeLeerls~Lr~Efle~klekEa~~-kl~eLE~ELeqkekELE~LrEk 123 (615)
+...+.+|. +..|+..+..++.-....+.-++.+. .+..|..+++.++.|++.++..
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKE 316 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 45577777776666544322222221 2233344444444444444433
No 248
>TIGR01338 phycocy_alpha phycocyanin, alpha subunit. This model excludes the closely related phycoerythrocyanin alpha subunit.
Probab=32.84 E-value=2.7e+02 Score=27.55 Aligned_cols=26 Identities=4% Similarity=-0.102 Sum_probs=17.0
Q ss_pred hHHHHHHHHhhccccChhhhhhhhhh
Q 007155 397 FIRYLIKEVESAAFTDIEDVVPFVKW 422 (615)
Q Consensus 397 ~IkkL~kELrvld~kd~eeV~~fv~w 422 (615)
.|..=|.+.+.++..+.+.|..|+..
T Consensus 7 ~I~~AD~qgRyls~~eL~~l~~~~~~ 32 (161)
T TIGR01338 7 AIAAADSQGRFLSNGELQSIFGRFQR 32 (161)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHc
Confidence 34555667777776777777777733
No 249
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=32.81 E-value=1.3e+02 Score=33.61 Aligned_cols=15 Identities=33% Similarity=0.167 Sum_probs=6.5
Q ss_pred hHHHHHHhhhhhhhh
Q 007155 372 DMIGEIENRSAHLLA 386 (615)
Q Consensus 372 DL~~ELenrSs~l~a 386 (615)
||-.=++.|.-|+.+
T Consensus 261 DMS~lm~mRk~ykda 275 (457)
T KOG0559|consen 261 DMSNLMEMRKQYKDA 275 (457)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444433
No 250
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.74 E-value=4e+02 Score=28.87 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=9.8
Q ss_pred ccccCCCchhHhH
Q 007155 572 HQFAGGFDVETMR 584 (615)
Q Consensus 572 hqfAGG~d~~~~~ 584 (615)
-.|+|.|+.+-..
T Consensus 321 isY~G~f~~~~R~ 333 (344)
T PF12777_consen 321 ISYLGPFTPEYRQ 333 (344)
T ss_dssp HHCCCCTSHHHHH
T ss_pred HHHcCCCCHHHHH
Confidence 3578999987664
No 251
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.71 E-value=6.8e+02 Score=29.71 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=9.6
Q ss_pred CCCCchHHHHHHH-HHHHHHH
Q 007155 63 PRPVPDVAELLRL-VEELRER 82 (615)
Q Consensus 63 ~~~spevlElLRr-VeeLeer 82 (615)
.+++.|-.++|-+ ++-++++
T Consensus 554 sP~~~E~~~lL~~a~~vfrEq 574 (741)
T KOG4460|consen 554 APPPEECLQLLSRATQVFREQ 574 (741)
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 3344555565555 3334444
No 252
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=32.65 E-value=2.4e+02 Score=33.39 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhccc
Q 007155 147 KKMKEMEQEIEELKKAASERSKVAELSIESDELSSSQRFQG 187 (615)
Q Consensus 147 eRisELEkqL~ELeKe~~~~~~~~~~~~~~~~~~ss~~~~~ 187 (615)
++|.+||.++..++.+..++- .+..+.|+||.---++-+|
T Consensus 357 e~i~elEEElk~~k~ea~~ar-~~~~~~e~ddiPmAqRkRF 396 (832)
T KOG2077|consen 357 EKIRELEEELKKAKAEAEDAR-QKAKDDEDDDIPMAQRKRF 396 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhcccccccccHHHHhhh
Confidence 344455555554444443321 1233445666654444444
No 253
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=32.52 E-value=3.2e+02 Score=23.31 Aligned_cols=6 Identities=33% Similarity=0.340 Sum_probs=2.3
Q ss_pred HHHHHH
Q 007155 154 QEIEEL 159 (615)
Q Consensus 154 kqL~EL 159 (615)
.+|..|
T Consensus 53 amI~RL 58 (65)
T TIGR02449 53 AMITRL 58 (65)
T ss_pred HHHHhh
Confidence 334333
No 254
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=32.48 E-value=3.7e+02 Score=26.51 Aligned_cols=34 Identities=35% Similarity=0.528 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 128 QCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 128 EeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
..+...|..+|. +-+.+..+||.+|.+|......
T Consensus 104 D~Ea~~L~~KLk----eEq~kv~~ME~~v~elas~m~~ 137 (152)
T PF11500_consen 104 DAEAMRLAEKLK----EEQEKVAEMERHVTELASQMAS 137 (152)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666 4446888899999998876644
No 255
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.46 E-value=2.2e+02 Score=32.79 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 007155 149 MKEMEQEIEELKKA 162 (615)
Q Consensus 149 isELEkqL~ELeKe 162 (615)
+..+..++.+|..+
T Consensus 125 ~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 125 RQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444455555443
No 256
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.35 E-value=1.7e+02 Score=28.90 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHhcCCCchHHHHHHHHHHhcccchhhHHHh-----hc-cccCCCCCchHHHHHHHHHHHHHHHhhhhhhh
Q 007155 435 AVLKHFDWPEQKADALREAAFGYFDLKKVETE-----AS-SFHDDARQPCGLAFKKMQALLEKLEHGVYNLS 500 (615)
Q Consensus 435 ~VLK~Fp~PekkldaLreaa~~Y~dL~eLese-----Ls-sfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~ 500 (615)
+=-+-|||-+..+++.++...+..+|+.-+.+ |. -.+|.|+.+ .|.-|...++.|+-..|....
T Consensus 73 ~CGkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d~PkT~--vA~~rfKk~~~K~g~~v~~~~ 142 (158)
T PF10083_consen 73 NCGKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTKDTPKTK--VAATRFKKILSKAGSIVGDAI 142 (158)
T ss_pred hCCCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhcCCccH--HHHHHHHHHHHHHhHHHHHHH
Confidence 44678999999999999988877777544432 22 224555444 455677777778777766553
No 257
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.34 E-value=2.8e+02 Score=33.42 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=57.4
Q ss_pred HHHHHHHhhccccChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHHHhhccccCCCCCch
Q 007155 399 RYLIKEVESAAFTDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPC 478 (615)
Q Consensus 399 kkL~kELrvld~kd~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLeseLssfkddp~~P~ 478 (615)
..++.++|.+.--+.++++.+ +-|++|..|+|.---++-|+.=+...|.|......-++--.+...+--|..-..-|-
T Consensus 335 ~~~iq~aR~ak~qe~~~~l~~--En~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e~~ly~lg~a~hp~ 412 (896)
T KOG4337|consen 335 SQIIQEARLAKRQEWEAALQY--ENDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHEQLLYWLGSADHPS 412 (896)
T ss_pred HHHHHHHHhhhHHHHHHHHHh--hhhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHHHHHHHhhccCCCc
Confidence 456777777533344444444 777778888877655555554333333333322222121233344445554444455
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhhhchHHHh
Q 007155 479 GLAFKKMQALLEKLEH-GVYNLSRMRESAT 507 (615)
Q Consensus 479 ~~aLkKm~~~l~K~e~-~v~~l~r~r~~~~ 507 (615)
++ -|+.+|+|.+. +|..+...|+..+
T Consensus 413 ee---~i~~l~~k~~~~Si~s~~~~re~v~ 439 (896)
T KOG4337|consen 413 EE---TIATLLNKRCEASISSLNSCREGVE 439 (896)
T ss_pred HH---HHHHHHHHHhhhhhhhhHHHhhhHH
Confidence 54 46788888887 7777766666543
No 258
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=32.25 E-value=2.7e+02 Score=30.08 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=23.9
Q ss_pred ccccchhhHHHHHHHHhhccccChh--hhhhhhhhh
Q 007155 390 DVETQGDFIRYLIKEVESAAFTDIE--DVVPFVKWL 423 (615)
Q Consensus 390 DVEd~~k~IkkL~kELrvld~kd~e--eV~~fv~wv 423 (615)
|....++.+..|..+++.+|+.+.. .-..|+.|+
T Consensus 43 d~~~vg~~L~~L~~~~~~~dp~~~~~~~~~~~l~kl 78 (333)
T PF05816_consen 43 DSGEVGELLNELRKEMDELDPSELKDEKKKGFLGKL 78 (333)
T ss_pred ccchHhHHHHHHHHHHHhCChhhhhhhhhhhHHHHh
Confidence 6666788889999999998877552 234555553
No 259
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=32.15 E-value=2.1e+02 Score=25.48 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 007155 110 IAAKNTELELSFKKIESLQCENERLKEMLEQNKRERE 146 (615)
Q Consensus 110 LeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEae 146 (615)
....+..|+.+.-.+..+++.+..|..+|++..+...
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555554443333
No 260
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.02 E-value=3e+02 Score=33.45 Aligned_cols=6 Identities=17% Similarity=-0.081 Sum_probs=2.5
Q ss_pred CchHHH
Q 007155 66 VPDVAE 71 (615)
Q Consensus 66 spevlE 71 (615)
|+++++
T Consensus 495 p~~ii~ 500 (771)
T TIGR01069 495 PHFIIE 500 (771)
T ss_pred CHHHHH
Confidence 344443
No 261
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.02 E-value=4.5e+02 Score=32.20 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=22.6
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEI 156 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL 156 (615)
.++++..+....++++++.+...+.+...|...++....+.+.+...++++-
T Consensus 312 ~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 312 TLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555544444444444444444433333333333333333
No 262
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=31.80 E-value=5.1e+02 Score=32.62 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=0.0
Q ss_pred ccccccccccCCCCCC--CCCCCCCCchHHHHHHHH------------------------HHHHHHHhHhHhHHHHHHHH
Q 007155 43 KTAFSRSFGVYFPRSS--AQVQPRPVPDVAELLRLV------------------------EELRERESLLKTELVEHKLV 96 (615)
Q Consensus 43 ~~~~~~~~g~~~prs~--~qv~~~~spevlElLRrV------------------------eeLeerls~Lr~Efle~kle 96 (615)
+.+|+||=--|+=.++ .+.-+.+..+.+++|+.| +..+.-+..+..++.+.--+
T Consensus 127 SAGFSrsNPYyIV~QGkI~~La~akD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeE 206 (1200)
T KOG0964|consen 127 SAGFSRSNPYYIVPQGKINELANAKDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEE 206 (1200)
T ss_pred hcCcccCCCceEeechhhHHhhcCCcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhhhhHHHHHHHh-----HHHHHHHHHhHHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAK-----NTELELSFKKIESLQCENERLKEM----------LEQNKREREKKMKEMEQEIEELKK 161 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqk-----ekELE~LrEk~EELEeE~~rLk~e----------LdeeEqEaeeRisELEkqL~ELeK 161 (615)
|+-++...+|+++-..+ +.|+......++.++........+ ..+.-......+.+|+..+..|..
T Consensus 207 KeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 207 KEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE 286 (1200)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred Hhh
Q 007155 162 AAS 164 (615)
Q Consensus 162 e~~ 164 (615)
..+
T Consensus 287 eke 289 (1200)
T KOG0964|consen 287 EKE 289 (1200)
T ss_pred HHH
No 263
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.70 E-value=1.6e+02 Score=36.68 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=30.1
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHH-HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELS-FKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKK 161 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~L-rEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeK 161 (615)
+++.-++.+|-.+++++..+|+.. ..+..++++.+.++..-+++.....++|+..+|..-+++++
T Consensus 360 dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~ 425 (1714)
T KOG0241|consen 360 DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQA 425 (1714)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455566655555555555541 12333344444444444444444444454444444444433
No 264
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=31.52 E-value=1.8e+02 Score=33.01 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHHHHHHHHH
Q 007155 122 KKIESLQCENERLKEMLEQNK----------REREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 122 Ek~EELEeE~~rLk~eLdeeE----------qEaeeRisELEkqL~ELeKe 162 (615)
..+..|+.++..++.++.... .....+|..|+.+|.+....
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~k 336 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNR 336 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555321 23344455555555554443
No 265
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=31.52 E-value=3.1e+02 Score=22.98 Aligned_cols=21 Identities=57% Similarity=0.749 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007155 144 EREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 144 EaeeRisELEkqL~ELeKe~~ 164 (615)
+++.++.+|+.+|..|.+..+
T Consensus 36 eaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 36 EAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777776666553
No 266
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=31.31 E-value=7.2e+02 Score=28.73 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=7.8
Q ss_pred hhhHHHHHHHhHHHHHH
Q 007155 103 VPVLESEIAAKNTELEL 119 (615)
Q Consensus 103 l~eLE~ELeqkekELE~ 119 (615)
+..|+.+|.....+|+.
T Consensus 339 v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 339 VSSLEAELNKTRSELEA 355 (522)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 33444444444444443
No 267
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=31.30 E-value=6.2e+02 Score=31.00 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007155 144 EREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 144 EaeeRisELEkqL~ELeKe 162 (615)
|...+|..||.+++-|...
T Consensus 187 e~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 187 ESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455565555555443
No 268
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=31.22 E-value=2.8e+02 Score=31.93 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 007155 146 EKKMKEMEQEIEEL 159 (615)
Q Consensus 146 eeRisELEkqL~EL 159 (615)
.+.+.+|..+++++
T Consensus 115 ~~~~~ql~~~~~~~ 128 (472)
T TIGR03752 115 TKEIEQLKSERQQL 128 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 269
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.80 E-value=3e+02 Score=22.78 Aligned_cols=11 Identities=45% Similarity=0.936 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 007155 149 MKEMEQEIEEL 159 (615)
Q Consensus 149 isELEkqL~EL 159 (615)
..+++.++..|
T Consensus 48 l~~~~~~~~~l 58 (66)
T PF10458_consen 48 LEELEEELEKL 58 (66)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 270
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.76 E-value=7.8e+02 Score=32.47 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=11.0
Q ss_pred HHHhhhhhccCCCchhhhhhhhHHH
Q 007155 504 ESATKRYRGFQIPMDWMLETGIVSQ 528 (615)
Q Consensus 504 ~~~~~~~~~~~ip~~wm~d~gi~~~ 528 (615)
+.....|.+-....+ +|+.+|+++
T Consensus 739 ~~~~~~~~~~~~~~~-~~~~~v~~~ 762 (1486)
T PRK04863 739 EGDPDSFDDSVFSVE-ELEKAVVVK 762 (1486)
T ss_pred cCChhHHhccCccHH-HhcCCeeee
Confidence 334445555554444 344444433
No 271
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.56 E-value=2.9e+02 Score=31.03 Aligned_cols=14 Identities=57% Similarity=0.593 Sum_probs=5.8
Q ss_pred HHHHHHHhHhHhHH
Q 007155 77 EELRERESLLKTEL 90 (615)
Q Consensus 77 eeLeerls~Lr~Ef 90 (615)
..|..++..+..++
T Consensus 337 ~~l~~~~~~~~~~l 350 (451)
T PF03961_consen 337 EELEEELEELKEEL 350 (451)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 272
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=30.49 E-value=7.5e+02 Score=32.13 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=8.2
Q ss_pred CCCchhHhHHHHHH
Q 007155 576 GGFDVETMRAFQEL 589 (615)
Q Consensus 576 GG~d~~~~~af~el 589 (615)
.|.|......+-+|
T Consensus 1288 a~lD~~~~~~~~~l 1301 (1353)
T TIGR02680 1288 AGVDDNARAHLFGL 1301 (1353)
T ss_pred ccCCHHHHHHHHHH
Confidence 56777665554443
No 273
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.48 E-value=5.5e+02 Score=28.59 Aligned_cols=23 Identities=9% Similarity=0.297 Sum_probs=12.1
Q ss_pred chhhHhHHHHHHhhhhhhhhhhc
Q 007155 367 TSNARDMIGEIENRSAHLLAIKT 389 (615)
Q Consensus 367 k~~~~DL~~ELenrSs~l~aiK~ 389 (615)
..+-+.||..|.+-......++.
T Consensus 282 sLdcRrLfDsLreEnlgmlfVYs 304 (401)
T PF06785_consen 282 SLDCRRLFDSLREENLGMLFVYS 304 (401)
T ss_pred hHHHHHHHhhhcccccceEEEec
Confidence 44456777777444444334444
No 274
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.47 E-value=2.5e+02 Score=25.90 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHhHhHHHH
Q 007155 71 ELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle 92 (615)
++-.++.++++++..+..++.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~ 26 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEE 26 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566665555555444
No 275
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=30.25 E-value=6.8e+02 Score=28.81 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHH
Q 007155 107 ESEIAAKNTELELSFKKIESLQCEN 131 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~ 131 (615)
|++... +|||.+|..+++.|.++
T Consensus 303 e~e~~r--kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 303 ENETSR--KELEQLRVALEKAEKEL 325 (575)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444443 67777777766665554
No 276
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=30.21 E-value=8.6e+02 Score=28.16 Aligned_cols=16 Identities=31% Similarity=0.152 Sum_probs=7.8
Q ss_pred CchHHHHHHHHHHhcc
Q 007155 442 WPEQKADALREAAFGY 457 (615)
Q Consensus 442 ~PekkldaLreaa~~Y 457 (615)
.|...+-.||.....+
T Consensus 344 sPTTLla~LrtI~~~W 359 (475)
T PRK10361 344 SPTTLLVALRTIANLW 359 (475)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 4455555555554444
No 277
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=30.18 E-value=6.2e+02 Score=26.30 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 125 ESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 125 EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
..+...+..++.++.+...+........+..+.+.....+-
T Consensus 131 ~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy 171 (217)
T PF10147_consen 131 AKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGY 171 (217)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33344444444444444444444444444555444444443
No 278
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=30.06 E-value=8.1e+02 Score=28.28 Aligned_cols=18 Identities=39% Similarity=0.335 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhHhHhHHH
Q 007155 74 RLVEELRERESLLKTELV 91 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efl 91 (615)
+++++|...+..++..+.
T Consensus 172 ~kve~L~~Ei~~lke~l~ 189 (522)
T PF05701_consen 172 EKVEELSKEIIALKESLE 189 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555554443
No 279
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.89 E-value=6.3e+02 Score=29.95 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhH
Q 007155 70 AELLRLVEELRERESL 85 (615)
Q Consensus 70 lElLRrVeeLeerls~ 85 (615)
.+.|||+..++....+
T Consensus 584 ~e~qrH~~~l~~~k~~ 599 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKK 599 (741)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555333
No 280
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=29.31 E-value=8.9e+02 Score=27.56 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHhHhHHHH
Q 007155 72 LLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle 92 (615)
++.+|++|+.-...||.....
T Consensus 218 Ll~kVdDLQD~VE~LRkDV~~ 238 (424)
T PF03915_consen 218 LLTKVDDLQDLVEDLRKDVVQ 238 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554433
No 281
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.01 E-value=6.2e+02 Score=26.31 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=18.5
Q ss_pred cccccccccCCCCCCCCCCCCCCchHHHHHHHHHH
Q 007155 44 TAFSRSFGVYFPRSSAQVQPRPVPDVAELLRLVEE 78 (615)
Q Consensus 44 ~~~~~~~g~~~prs~~qv~~~~spevlElLRrVee 78 (615)
+.|.|-||.. -|..+..+.+-+..||..++
T Consensus 2 s~~~~~FG~~-----k~~~~~t~~eaI~kLrEtee 31 (221)
T KOG1656|consen 2 SMFSRLFGGM-----KQEAKPTPQEAIQKLRETEE 31 (221)
T ss_pred cHHHHHhCcc-----cccCCCChHHHHHHHHHHHH
Confidence 5688999987 44444445566666665433
No 282
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.87 E-value=5.6e+02 Score=25.09 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 007155 143 REREKKMKEMEQ 154 (615)
Q Consensus 143 qEaeeRisELEk 154 (615)
...+.++.+++.
T Consensus 123 ~~~~~ki~e~~~ 134 (177)
T PF07798_consen 123 AKQELKIQELNN 134 (177)
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 283
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.79 E-value=3.9e+02 Score=31.59 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=8.6
Q ss_pred cccchhhHHHHHHHHhhc
Q 007155 391 VETQGDFIRYLIKEVESA 408 (615)
Q Consensus 391 VEd~~k~IkkL~kELrvl 408 (615)
+......++.|.+|+..+
T Consensus 463 ~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 463 IRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 333344445555555554
No 284
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=28.65 E-value=3e+02 Score=28.35 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=41.0
Q ss_pred cChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHH
Q 007155 411 TDIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKM 485 (615)
Q Consensus 411 kd~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm 485 (615)
.+.+++..-+..++..| .+.+..+|..++ + ......|.-+..|..|.+.|...-..++.++++++
T Consensus 119 ~~~e~~~~~~~~ies~l-----~~~~~~~f~~~~--w---~~l~~~~l~~~rL~~E~~~~~~~~~s~l~~~~~~~ 183 (212)
T PF07307_consen 119 ETAEEYLESVVTIESAL-----FQSFAEHFGKPE--W---KELIEEFLLLKRLLKERELYQEGGNSPLFEALKHI 183 (212)
T ss_pred CCHHHHHHHHHHHHHHH-----HHHHHHHHhHHH--H---HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35666666666666665 556677776433 2 22334455567778888888866556666666666
No 285
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.62 E-value=5e+02 Score=30.73 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=7.8
Q ss_pred cccchhhHHHHHHHHhhc
Q 007155 391 VETQGDFIRYLIKEVESA 408 (615)
Q Consensus 391 VEd~~k~IkkL~kELrvl 408 (615)
|.+.-.-++.+-+||..+
T Consensus 507 I~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 507 IEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444555543
No 286
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=28.61 E-value=3.8e+02 Score=28.31 Aligned_cols=10 Identities=50% Similarity=0.664 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 007155 127 LQCENERLKE 136 (615)
Q Consensus 127 LEeE~~rLk~ 136 (615)
|+.|+..|+.
T Consensus 227 leken~~lr~ 236 (269)
T KOG3119|consen 227 LEKENEALRT 236 (269)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 287
>PRK01156 chromosome segregation protein; Provisional
Probab=28.57 E-value=8.8e+02 Score=29.50 Aligned_cols=15 Identities=7% Similarity=0.224 Sum_probs=10.0
Q ss_pred cCCCchhHhHHHHHH
Q 007155 575 AGGFDVETMRAFQEL 589 (615)
Q Consensus 575 AGG~d~~~~~af~el 589 (615)
..|+|++..+.+-++
T Consensus 835 t~~lD~~~~~~l~~~ 849 (895)
T PRK01156 835 TAFLDEDRRTNLKDI 849 (895)
T ss_pred CCcCCHHHHHHHHHH
Confidence 468888877665443
No 288
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.57 E-value=6.3e+02 Score=25.55 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=12.6
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASA 100 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~ 100 (615)
+.+|...+..++..+.++..++..+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~L 38 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTL 38 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444433
No 289
>PHA03211 serine/threonine kinase US3; Provisional
Probab=28.52 E-value=74 Score=35.74 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=7.3
Q ss_pred ccchhhHHHHHHhhh
Q 007155 334 VRRIPEVVEFYHSLM 348 (615)
Q Consensus 334 v~r~p~lv~~y~sL~ 348 (615)
..|-..+-|.-..+.
T Consensus 65 ~~~~~~~~~~~~~~~ 79 (461)
T PHA03211 65 AARLCQIQELLAEMR 79 (461)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445555555444
No 290
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.50 E-value=3.6e+02 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=4.0
Q ss_pred HHHHhHHHHHH
Q 007155 109 EIAAKNTELEL 119 (615)
Q Consensus 109 ELeqkekELE~ 119 (615)
++...+.+++.
T Consensus 126 ~l~~~~~~~~~ 136 (192)
T PF05529_consen 126 ELIKLEEKLEA 136 (192)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 291
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.40 E-value=1.6e+02 Score=32.58 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=8.4
Q ss_pred ccChhhhhhhhh
Q 007155 410 FTDIEDVVPFVK 421 (615)
Q Consensus 410 ~kd~eeV~~fv~ 421 (615)
|.|.+++..|+.
T Consensus 332 F~~~~~~~~fl~ 343 (370)
T PF02994_consen 332 FTDPEEAKEFLK 343 (370)
T ss_dssp ESSHHHHHHHHC
T ss_pred CCCHHHHHHHHH
Confidence 467777777764
No 292
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=28.21 E-value=9.3e+02 Score=28.09 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.6
Q ss_pred CCchHHHHHHHHHHHHHH
Q 007155 65 PVPDVAELLRLVEELRER 82 (615)
Q Consensus 65 ~spevlElLRrVeeLeer 82 (615)
-+|.+..++.++.+|++.
T Consensus 82 LsPgE~~l~~Kl~eLE~e 99 (508)
T PF00901_consen 82 LSPGEQGLQRKLKELEDE 99 (508)
T ss_pred CCHhHHHHHHHHHHHHHH
Confidence 468899999998887766
No 293
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.05 E-value=6.6e+02 Score=25.61 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHhHhHHHHHHHHHH-----HHhhhhhHHHHHHHhHHHHHHHHHhHHHH
Q 007155 69 VAELLRLVEELRERESLLKTELVEHKLVKA-----SAAIVPVLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Efle~klekE-----a~~kl~eLE~ELeqkekELE~LrEk~EEL 127 (615)
+.+....++.....+.|+..++.-+.|+.. |..-...||..+...++++..+++.++++
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~v 162 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEV 162 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555444432223222 22223345555555555555555555444
No 294
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.82 E-value=3.1e+02 Score=28.78 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=11.7
Q ss_pred HHHhHHHHHHHHHHHHHHhh
Q 007155 120 SFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 120 LrEk~EELEeE~~rLk~eLd 139 (615)
+..+++.++.++.+|++.++
T Consensus 59 l~~ql~~lq~ev~~LrG~~E 78 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQ 78 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 44455556666666666665
No 295
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=27.80 E-value=3.6e+02 Score=30.27 Aligned_cols=66 Identities=26% Similarity=0.264 Sum_probs=33.3
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 100 AAIVPVLESEIAAKNTELELSFKKIESLQCENERLKE------MLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~------eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
++.+-+|+.+..+...+++.++.+...+..++..+.. .+.++-++..+++.+||.++.+++.....
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666665555555543211 12222234444455555555555555443
No 296
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=27.77 E-value=74 Score=34.79 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=9.2
Q ss_pred HHhhhhhcceeec
Q 007155 560 LIVQGVRFAFRVH 572 (615)
Q Consensus 560 ll~q~~~fafrvh 572 (615)
-+++-.-||||+-
T Consensus 386 dIvkiMAYayRmA 398 (407)
T PF04625_consen 386 DIVKIMAYAYRMA 398 (407)
T ss_pred HHHHHHHHHHHHH
Confidence 4667777888864
No 297
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=27.68 E-value=4.3e+02 Score=32.39 Aligned_cols=6 Identities=33% Similarity=0.634 Sum_probs=2.7
Q ss_pred HHHHHH
Q 007155 107 ESEIAA 112 (615)
Q Consensus 107 E~ELeq 112 (615)
|.+|.+
T Consensus 435 e~dL~~ 440 (894)
T KOG0132|consen 435 EQDLAN 440 (894)
T ss_pred HHHHHH
Confidence 444444
No 298
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.47 E-value=6.8e+02 Score=30.91 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=18.8
Q ss_pred ChhhhhhhhhhhHHHHhHHHhHHHHHh
Q 007155 412 DIEDVVPFVKWLDDELSYLVDERAVLK 438 (615)
Q Consensus 412 d~eeV~~fv~wvDeeL~~l~de~~VLK 438 (615)
.+.++..-|++..+.|..|+-|++.|-
T Consensus 487 ei~qlqarikE~q~kl~~l~~Ekq~l~ 513 (1118)
T KOG1029|consen 487 EIDQLQARIKELQEKLQKLAPEKQELN 513 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 456667777777777777777766554
No 299
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=27.39 E-value=6.7e+02 Score=25.45 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 007155 149 MKEMEQEIEELKKAASE 165 (615)
Q Consensus 149 isELEkqL~ELeKe~~~ 165 (615)
...||.+..++=+....
T Consensus 157 l~~le~k~~e~yk~t~e 173 (187)
T PF05300_consen 157 LARLEEKNAEFYKVTSE 173 (187)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 300
>PRK00846 hypothetical protein; Provisional
Probab=27.36 E-value=3.8e+02 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=7.6
Q ss_pred hhhhHHHHHHHhHHHHH
Q 007155 102 IVPVLESEIAAKNTELE 118 (615)
Q Consensus 102 kl~eLE~ELeqkekELE 118 (615)
+|.+||..+.-.+.-++
T Consensus 14 Ri~~LE~rlAfQe~tIe 30 (77)
T PRK00846 14 RLVELETRLSFQEQALT 30 (77)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455544444333333
No 301
>PF04965 GPW_gp25: Gene 25-like lysozyme; InterPro: IPR007048 The family of sequences represented by this entry include proteins from Bacteriophage T4 and related phage, which may be structural components of the outer wedge of the baseplate that has acidic lysozyme activity [, ]. They also include anti-adapter protein IraD, from bacteria, that inhibit RpoS proteolysis by regulating RssB activity [].; PDB: 2IA7_A.
Probab=27.31 E-value=62 Score=28.16 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhhhhhhhchHHHhhhhhccCCCchhhh---hhhhHHHHHHHHHHHHHHHHHH
Q 007155 485 MQALLEKLEHGVYNLSRMRESATKRYRGFQIPMDWML---ETGIVSQIKLASVKLAMKYMKR 543 (615)
Q Consensus 485 m~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ip~~wm~---d~gi~~~ik~~sv~lA~~~~kr 543 (615)
+..+.+-|.+.|..|+.||-.....--+||+| ||.- +.....+|+..-.+.-.+|-.|
T Consensus 3 ~~~~~~~I~q~l~~lL~Tr~g~~~~~~~yGl~-d~~~~~~~~~~~~~i~~~I~~aI~~~EPR 63 (99)
T PF04965_consen 3 RVSLRESIRQSLEMLLNTRPGERPSRPDYGLP-DLIFEPISPDTRQAIRREIREAIQRFEPR 63 (99)
T ss_dssp ---HHHHHHHHHHHHHT--TTSSTT-TT-SGG-G---S---HHHHHHHHHHHHHHHHHH-TT
T ss_pred chhHHHHHHHHHHHHHCCCCCccccCcccCCh-hHcCCCCCHHHHHHHHHHHHHHHHHhCCc
Confidence 34567889999999999999999999999966 5542 2233444444434444445444
No 302
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=27.27 E-value=5.2e+02 Score=24.15 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007155 114 NTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQE 155 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkq 155 (615)
+..++.++..++.+..-..+|+.++-+--.........|++.
T Consensus 71 ~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl 112 (132)
T PF10392_consen 71 ESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERL 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334445555555666666666666664444444444444443
No 303
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=27.21 E-value=5e+02 Score=26.67 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=15.7
Q ss_pred CchHHHHHHHHHHHHHHHh
Q 007155 476 QPCGLAFKKMQALLEKLEH 494 (615)
Q Consensus 476 ~P~~~aLkKm~~~l~K~e~ 494 (615)
.++...|.||.-|+.||..
T Consensus 194 g~l~~El~rmR~LlarV~~ 212 (213)
T PF13093_consen 194 GELEAELERMRMLLARVAG 212 (213)
T ss_pred chHHHHHHHHHHHHHHHcc
Confidence 4888899999999988753
No 304
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=27.13 E-value=5e+02 Score=29.14 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKE-------MLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~-------eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
+.+-.|+.+..+...+++.++.+.+....++..+.. .+.+.-++..+++.+||.++.+++.....
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555556666665555555544433221 12122233444455555555555544433
No 305
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=27.01 E-value=7e+02 Score=33.78 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=5.5
Q ss_pred HHhhhhhcceeecc
Q 007155 560 LIVQGVRFAFRVHQ 573 (615)
Q Consensus 560 ll~q~~~fafrvhq 573 (615)
-.|+..+..++-+|
T Consensus 1576 ~~rk~~~~~i~~~q 1589 (1930)
T KOG0161|consen 1576 ELRKNLQRQLESLQ 1589 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 306
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.92 E-value=5.5e+02 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=14.6
Q ss_pred CchHHHHHHHHHHHHHHHhHh
Q 007155 66 VPDVAELLRLVEELRERESLL 86 (615)
Q Consensus 66 spevlElLRrVeeLeerls~L 86 (615)
||++-.++....+|+.++..+
T Consensus 5 pp~~q~~l~q~QqLq~ql~~~ 25 (119)
T COG1382 5 PPEVQAQLAQLQQLQQQLQKV 25 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777775553
No 307
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=26.87 E-value=1.9e+02 Score=23.78 Aligned_cols=28 Identities=43% Similarity=0.389 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 106 LESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 106 LE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
+..++.+++.+++.+++..++++.++..
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333
No 308
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=26.80 E-value=4.6e+02 Score=24.89 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=13.9
Q ss_pred CchHHHHHHHHHHHHHHHhHhH
Q 007155 66 VPDVAELLRLVEELRERESLLK 87 (615)
Q Consensus 66 spevlElLRrVeeLeerls~Lr 87 (615)
|+-++.+|...+.++++...+.
T Consensus 66 P~tvLALLDElE~~~~~i~~~~ 87 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELE 87 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777666666655544
No 309
>PHA03161 hypothetical protein; Provisional
Probab=26.73 E-value=4.7e+02 Score=25.77 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.8
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHH
Q 007155 100 AAIVPVLESEIAAKNTELELSFK 122 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrE 122 (615)
-.+|..|++++.++++|++.|..
T Consensus 60 ~~~v~~l~~~I~~k~kE~~~L~~ 82 (150)
T PHA03161 60 EGMLQAVDLSIQEKKKELSLLKA 82 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788889999999999988754
No 310
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=26.69 E-value=5.2e+02 Score=28.64 Aligned_cols=34 Identities=9% Similarity=-0.071 Sum_probs=13.6
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
.|+++-..+-=|++.|+..+++.++++..-.+++
T Consensus 137 QLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~ 170 (405)
T KOG2010|consen 137 QLDNEKNNLIYQVDTLKDVLEEQEEQLAESYREN 170 (405)
T ss_pred hhcccccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433333333344444444444444443333333
No 311
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.52 E-value=6.2e+02 Score=27.90 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007155 73 LRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEM 152 (615)
Q Consensus 73 LRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisEL 152 (615)
++.+++++++...+.+.+.. ...++.++..-..+-.+.++.-++++.++...+.+++.... .+..+.+.+|
T Consensus 3 ~eEW~eL~~efq~Lqethr~------Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~---~e~~~~i~~L 73 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRS------YKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLS---AEERELIEKL 73 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---hhHHHHHHHH
Confidence 45566666666555554432 22355555444444444555444444444444444332222 2333444555
Q ss_pred HHHHHHHH
Q 007155 153 EQEIEELK 160 (615)
Q Consensus 153 EkqL~ELe 160 (615)
+..+.+..
T Consensus 74 ~~~Ik~r~ 81 (330)
T PF07851_consen 74 EEDIKERR 81 (330)
T ss_pred HHHHHHHH
Confidence 55554443
No 312
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.50 E-value=3.6e+02 Score=25.83 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHHHhH
Q 007155 107 ESEIAAKNTELELSFKKI 124 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~ 124 (615)
|.+|......++.+++.+
T Consensus 33 E~qL~~~~~~l~lLq~e~ 50 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEI 50 (160)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 313
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=26.45 E-value=7.2e+02 Score=33.65 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 007155 481 AFKKMQALLEKLEHGV 496 (615)
Q Consensus 481 aLkKm~~~l~K~e~~v 496 (615)
-+.++...++.+...+
T Consensus 1471 el~kl~~~lee~~e~~ 1486 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLEQL 1486 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444443333333
No 314
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.38 E-value=1.6e+02 Score=23.16 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
|.+...+....+.++...+.+..++..|+.++
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444433333
No 315
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.33 E-value=6.4e+02 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.403 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 140 QNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 140 eeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
+.+.....+..+||..+..|....+.
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666555443
No 316
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=26.21 E-value=5.5e+02 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=17.7
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
.+..+++.++.....|++.++..+..++.+..+++++.
T Consensus 725 nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 725 NRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444545555445555555444444444444443333
No 317
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=25.96 E-value=6.6e+02 Score=26.67 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=29.3
Q ss_pred HHHHHhHHHHHHHH--HhHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 108 SEIAAKNTELELSF--KKIESLQCEN-ERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 108 ~ELeqkekELE~Lr--Ek~EELEeE~-~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
.++.-.|.++|.++ ++.-++..++ ......+..+..|.+.+.+.|+.++..|..+...
T Consensus 186 ~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 186 QQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34444455555543 2222222222 2233444455566666667777777777666544
No 318
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.96 E-value=2.8e+02 Score=29.91 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHH-----HHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 86 LKTELVEHKLVKA-----SAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 86 Lr~Efle~klekE-----a~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
+.|-.-+ ||+ ++.+|.+||.++..+.+|-..-.-+++.++.-+.+-+.+.+.+..+.-....+....+..++
T Consensus 1 MSWa~eE---WKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~ 77 (307)
T PF10481_consen 1 MSWAVEE---WKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCE 77 (307)
T ss_pred CcchHhH---HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Q ss_pred HH
Q 007155 161 KA 162 (615)
Q Consensus 161 Ke 162 (615)
..
T Consensus 78 ~l 79 (307)
T PF10481_consen 78 NL 79 (307)
T ss_pred HH
No 319
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.86 E-value=4.2e+02 Score=22.58 Aligned_cols=33 Identities=27% Similarity=0.204 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+..+..+..|-+.+...+.....++.+|+.+++
T Consensus 25 ~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 25 EIENKRLRRERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333334444443333
No 320
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.80 E-value=2.5e+02 Score=29.45 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=45.5
Q ss_pred CchHHHHHHHHHHhcccchhhHHHhhcccc----CCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhccC
Q 007155 442 WPEQKADALREAAFGYFDLKKVETEASSFH----DDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQ 514 (615)
Q Consensus 442 ~PekkldaLreaa~~Y~dL~eLeseLssfk----ddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~~ 514 (615)
||.- ..+|-..++.|..+.+++..|..|+ .|| ...++-++|.+|-.++..+- ++++.++|.+.|++|
T Consensus 164 ~pty-~kAl~RRAeayek~ek~eealeDyKki~E~dP--s~~ear~~i~rl~~~i~ern---EkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 164 NPTY-EKALERRAEAYEKMEKYEEALEDYKKILESDP--SRREAREAIARLPPKINERN---EKMKEEMMEKLKDLG 234 (271)
T ss_pred Cchh-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc--chHHHHHHHHhcCHHHHHHH---HHHHHHHHHHHHHhh
Confidence 4433 3455566888999999998888776 454 34577777777766666543 466777777777664
No 321
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.76 E-value=1e+03 Score=31.04 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=13.9
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
+++.++.....++..+.++......++..+...+
T Consensus 886 ~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l 919 (1353)
T TIGR02680 886 RAESDAREAAEDAAEARAEAEEASLRLRTLEESV 919 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433433333333
No 322
>PRK00736 hypothetical protein; Provisional
Probab=25.69 E-value=3.2e+02 Score=23.12 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 007155 103 VPVLESEIA 111 (615)
Q Consensus 103 l~eLE~ELe 111 (615)
+.+||..+.
T Consensus 7 i~~LE~kla 15 (68)
T PRK00736 7 LTELEIRVA 15 (68)
T ss_pred HHHHHHHHH
Confidence 333433333
No 323
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=25.69 E-value=4.4e+02 Score=22.78 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHH
Q 007155 78 ELRERESLLKTELVEHKLVKASAAIVPVLESEIAA 112 (615)
Q Consensus 78 eLeerls~Lr~Efle~klekEa~~kl~eLE~ELeq 112 (615)
+.+.++..|+.+-=+.|+ ++-.||..+.+
T Consensus 4 Eqe~~i~~L~KENF~LKL------rI~fLee~l~~ 32 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKL------RIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHHHhhhhHHH------HHHHHHHHHHh
Confidence 445555556666555443 45555555553
No 324
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.39 E-value=8e+02 Score=28.19 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=5.2
Q ss_pred chhhHHHHHHhhh
Q 007155 336 RIPEVVEFYHSLM 348 (615)
Q Consensus 336 r~p~lv~~y~sL~ 348 (615)
+-.++-.+-..|+
T Consensus 367 ke~E~q~lr~~l~ 379 (511)
T PF09787_consen 367 KESEIQKLRNQLS 379 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 325
>PRK04406 hypothetical protein; Provisional
Probab=25.33 E-value=3.1e+02 Score=23.69 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=2.5
Q ss_pred hhHHHHH
Q 007155 104 PVLESEI 110 (615)
Q Consensus 104 ~eLE~EL 110 (615)
.+||..+
T Consensus 14 ~~LE~~l 20 (75)
T PRK04406 14 NDLECQL 20 (75)
T ss_pred HHHHHHH
Confidence 3333333
No 326
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=25.32 E-value=5.7e+02 Score=29.90 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH----HHH
Q 007155 77 EELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKM----KEM 152 (615)
Q Consensus 77 eeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRi----sEL 152 (615)
..|..+++.++++.-+ .++.+++++..|.+++.. .+..++++++.+-.++..+..++.-...+...+| ...
T Consensus 379 qtL~~rL~e~~~e~~~--~~r~~lekl~~~q~e~~~---~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R 453 (531)
T PF15450_consen 379 QTLNLRLSEAKNEWES--DERKSLEKLDQWQNEMEK---HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAR 453 (531)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHH
Q ss_pred HHHHHHHHHH
Q 007155 153 EQEIEELKKA 162 (615)
Q Consensus 153 EkqL~ELeKe 162 (615)
+..|..+...
T Consensus 454 ~~eV~~vRqE 463 (531)
T PF15450_consen 454 EREVGAVRQE 463 (531)
T ss_pred HHHHHHHHHH
No 327
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.26 E-value=9e+02 Score=26.64 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007155 75 LVEELRER 82 (615)
Q Consensus 75 rVeeLeer 82 (615)
|+..|..+
T Consensus 269 rl~~L~~~ 276 (388)
T PF04912_consen 269 RLKSLLSE 276 (388)
T ss_pred HHHHHHHH
Confidence 34333333
No 328
>PLN02281 chlorophyllide a oxygenase
Probab=25.22 E-value=9.6e+02 Score=28.22 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhc
Q 007155 114 NTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASERSKVAELSIESDELSSSQRF 185 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~~~~~~~~~~~~~~~~ss~~~ 185 (615)
-+-++.+++++..|++++.+...++.-. +.+....-.++.+.+.....+.-.-..+++-++|||++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (536)
T PLN02281 120 YKSIGTVKKELAGLQEELSKAHQQVHIS----EARVSTALDKLAHMEELVNDRLLPGRVVTELDKPSSSTTA 187 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHHHHHhhhhccCCCccccccccccCCcC
Confidence 3445556666666676666655555411 1222211122233333222222222334556888888776
No 329
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.15 E-value=1.1e+03 Score=27.19 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHHHHH
Q 007155 67 PDVAELLRLVEELRER 82 (615)
Q Consensus 67 pevlElLRrVeeLeer 82 (615)
.|.+.++-|+..|+++
T Consensus 250 qEnlqLvhR~h~LEEq 265 (502)
T KOG0982|consen 250 QENLQLVHRYHMLEEQ 265 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666665444433
No 330
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.96 E-value=3.7e+02 Score=31.93 Aligned_cols=35 Identities=29% Similarity=0.168 Sum_probs=17.6
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+||..-..++.|++.++.++|++...+.+.+.+|.
T Consensus 97 ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~ 131 (907)
T KOG2264|consen 97 ELEVKRQELNSEIEEINTKIEELKRLIPQKQLELS 131 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444444555555555555555555444444444
No 331
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.93 E-value=1e+03 Score=30.44 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhc
Q 007155 480 LAFKKMQALLEKLEHGVYNLSRMRESATKRYRG 512 (615)
Q Consensus 480 ~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~ 512 (615)
..|.++..-+..++..|..++..|. .+..|+.
T Consensus 771 ~~I~~l~~~i~~L~~~l~~ie~~r~-~V~eY~~ 802 (1201)
T PF12128_consen 771 ERIQQLKQEIEQLEKELKRIEERRA-EVIEYED 802 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence 3555555555666666666655554 3334444
No 332
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.88 E-value=1.1e+03 Score=28.89 Aligned_cols=6 Identities=17% Similarity=0.324 Sum_probs=2.5
Q ss_pred CchHHH
Q 007155 66 VPDVAE 71 (615)
Q Consensus 66 spevlE 71 (615)
|+++++
T Consensus 500 p~~ii~ 505 (782)
T PRK00409 500 PENIIE 505 (782)
T ss_pred CHHHHH
Confidence 344443
No 333
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.77 E-value=4.8e+02 Score=22.96 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
.-.+|...|.+++.|++.+.-.+..+...+.+
T Consensus 6 qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 6 QNKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777666655555555443
No 334
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.76 E-value=9.5e+02 Score=28.06 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHhHhHHH--HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHH
Q 007155 69 VAELLRLVEELRERESLLKTELV--EHKLVKASAAIVPVLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Efl--e~klekEa~~kl~eLE~ELeqkekELE~LrEk~EEL 127 (615)
.-.+-+++..|......+..-.. ..| ..++...+..|..++..++.|++.++....+|
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K-~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L 356 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQK-SQEWPGKLEKLKSEIELKEEEIKALQSNIDEL 356 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455667777776666655552 222 23344455556666666666666665544443
No 335
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.70 E-value=3.4e+02 Score=28.76 Aligned_cols=57 Identities=25% Similarity=0.269 Sum_probs=40.2
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 108 SEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 108 ~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
.+...+.+++..++++.++|..++..+...++...++-...-.++|.++..|....+
T Consensus 50 ~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 50 ARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhc
Confidence 333455667777777777888888888888876555555666788888888887654
No 336
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.32 E-value=9.2e+02 Score=26.04 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=25.7
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHH-------HHHHHHHHHHHHhh
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIE-------SLQCENERLKEMLE 139 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~E-------ELEeE~~rLk~eLd 139 (615)
+-+.++..+++.-|..-|.-+..|+..++ .++.++..|+.+.+
T Consensus 219 ~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e 268 (309)
T PF09728_consen 219 NLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWE 268 (309)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777666666655555555444 45666666666555
No 337
>PF14282 FlxA: FlxA-like protein
Probab=24.26 E-value=2.4e+02 Score=25.66 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 007155 147 KKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 147 eRisELEkqL~ELeKe~~~ 165 (615)
..|..|+.+|.+|......
T Consensus 58 ~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 58 AQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666666555433
No 338
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=24.22 E-value=6.8e+02 Score=25.30 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhHHHHhHHHhH-HHHHhcCCCchHHHHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHH
Q 007155 413 IEDVVPFVKWLDDELSYLVDE-RAVLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEK 491 (615)
Q Consensus 413 ~eeV~~fv~wvDeeL~~l~de-~~VLK~Fp~PekkldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K 491 (615)
+.+|..+++.+++.|..+.-. +-|+++. ......+++.+..|+.+..++ ..++.+|.+|-..+|.
T Consensus 16 F~~ikey~~~L~~~l~~iekv~~Rl~~r~---~~l~~~~~e~g~~f~~ls~~E-----------~~l~~~le~~g~~~d~ 81 (201)
T cd07622 16 FEDLKNYSDELQTNLNNLLKVRARLAERL---YGVYKIHANYGRVFSEWSAIE-----------KEMGDGLQKAGHYMDS 81 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHH
Confidence 456777777777777553211 1112211 111222333333333333222 3788899999999999
Q ss_pred HHhhhhhhh
Q 007155 492 LEHGVYNLS 500 (615)
Q Consensus 492 ~e~~v~~l~ 500 (615)
+-.++..+.
T Consensus 82 ~~~~~~~~~ 90 (201)
T cd07622 82 YAASIDNGL 90 (201)
T ss_pred HHHHHHHHH
Confidence 888887654
No 339
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.14 E-value=5.4e+02 Score=27.76 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=13.9
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHh
Q 007155 101 AIVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk 123 (615)
..+.+++.++.+.+.++..|+++
T Consensus 177 ~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 177 NEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666666666666666553
No 340
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=24.11 E-value=6.5e+02 Score=28.04 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHHHH
Q 007155 72 LLRLVEELRERESLLKTELVEHKLV 96 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~kle 96 (615)
++.+++.+..++..+...+....+|
T Consensus 5 ~~~~~~~~~~~~~~le~~~~~p~~w 29 (360)
T TIGR00019 5 LLEKLESLLERYEELEALLSDPEVI 29 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3455555666655555555444444
No 341
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=24.10 E-value=7.9e+02 Score=28.96 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=14.3
Q ss_pred hhhhHHHHHHHhHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSF 121 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~Lr 121 (615)
-+++||++|...+.++..|.
T Consensus 165 ~~~~lEk~Le~i~~~l~qf~ 184 (570)
T COG4477 165 AAPELEKKLENIEEELSQFV 184 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 35577888888877777763
No 342
>PHA01750 hypothetical protein
Probab=24.06 E-value=3e+02 Score=23.74 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 007155 148 KMKEMEQEIEELKKA 162 (615)
Q Consensus 148 RisELEkqL~ELeKe 162 (615)
++-+|+.++.++.+.
T Consensus 57 kqDnl~~qv~eik~k 71 (75)
T PHA01750 57 KQDELSRQVEEIKRK 71 (75)
T ss_pred hHHHHHHHHHHHHHh
Confidence 333455555555544
No 343
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=24.00 E-value=3.3e+02 Score=31.04 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=7.8
Q ss_pred hhHhHHHHHHhhhh
Q 007155 369 NARDMIGEIENRSA 382 (615)
Q Consensus 369 ~~~DL~~ELenrSs 382 (615)
.++-+=.||...++
T Consensus 267 ~dR~lCrElRrNSS 280 (436)
T PF01093_consen 267 QDRMLCRELRRNSS 280 (436)
T ss_pred CCccchHHHhhcch
Confidence 34455577855555
No 344
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=23.83 E-value=5.4e+02 Score=32.20 Aligned_cols=18 Identities=17% Similarity=0.008 Sum_probs=7.6
Q ss_pred cchhhhhhhhhhhhcccC
Q 007155 188 LVEVSVKSNLIKNLKRAK 205 (615)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~ 205 (615)
+-..+-.+++|.-.|+..
T Consensus 133 nd~gssdpkdidqdnrst 150 (982)
T PF03154_consen 133 NDDGSSDPKDIDQDNRST 150 (982)
T ss_pred cccCCCCccccccccccC
Confidence 333333444444444433
No 345
>PRK12705 hypothetical protein; Provisional
Probab=23.81 E-value=7.7e+02 Score=28.74 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 007155 534 VKLAMKYMKRVSAEL 548 (615)
Q Consensus 534 v~lA~~~~krv~~e~ 548 (615)
+.||+.-.+++-.||
T Consensus 473 ~~la~~Ia~~Ie~el 487 (508)
T PRK12705 473 TLLARDIAKKIENDL 487 (508)
T ss_pred HHHHHHHHHHHHhhC
Confidence 344444444443333
No 346
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=23.69 E-value=1e+03 Score=32.10 Aligned_cols=28 Identities=29% Similarity=0.177 Sum_probs=14.5
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHHhHHHH
Q 007155 100 AAIVPVLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrEk~EEL 127 (615)
++....++.++.++..++..++++.++.
T Consensus 797 ~~~k~~~e~~i~eL~~el~~lk~klq~~ 824 (1822)
T KOG4674|consen 797 MATKDKCESRIKELERELQKLKKKLQEK 824 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 347
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.59 E-value=2.5e+02 Score=29.03 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhHHHHHHHHHhHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 103 VPVLESEIAAKNTELELSFKKIESL--QCENERLKEMLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 103 l~eLE~ELeqkekELE~LrEk~EEL--EeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
+-+++.+|+.++.+.+.+.+.+++- -+++..+.++|. +....+..++.++..|.....
T Consensus 134 y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~----~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELS----RVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhc
Confidence 3466777777777777666655432 233444555554 333344455566666665543
No 348
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=23.57 E-value=5.8e+02 Score=28.53 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhhhhhh----hchHHHhhhhhccCCCchh
Q 007155 483 KKMQALLEKLEHGVYNLS----RMRESATKRYRGFQIPMDW 519 (615)
Q Consensus 483 kKm~~~l~K~e~~v~~l~----r~r~~~~~~~~~~~ip~~w 519 (615)
+||.+...++...++.|. +.|..-.+.|=+| ||-|+
T Consensus 363 ~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~Gdy-LP~di 402 (412)
T PF04108_consen 363 DKMKKIIREANEELDKLREEEQRRREAFLKEYGDY-LPEDI 402 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-CChhh
Confidence 567777777776666552 3344344445444 66654
No 349
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.54 E-value=6.8e+02 Score=28.59 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHhHhHHHH
Q 007155 75 LVEELRERESLLKTELVE 92 (615)
Q Consensus 75 rVeeLeerls~Lr~Efle 92 (615)
++.+|++++..++.++..
T Consensus 72 ~~~~l~~~l~~l~~~~~~ 89 (525)
T TIGR02231 72 RLAELRKQIRELEAELRD 89 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666544
No 350
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.53 E-value=7.9e+02 Score=31.88 Aligned_cols=78 Identities=15% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQE 155 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkq 155 (615)
.+.|++++..|+-++-+ -.|++.-..+|=..|...+.-+...+++....+.++.++..++++..+.-+..|..|.+.
T Consensus 1175 r~~~~~enk~l~~qlrd---taeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~ 1251 (1320)
T PLN03188 1175 RRYLRDENKSLQAQLRD---TAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQL 1251 (1320)
T ss_pred HHHHHHhhHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555533 356666666765666655555555667777888888888888886666655555555554
Q ss_pred H
Q 007155 156 I 156 (615)
Q Consensus 156 L 156 (615)
+
T Consensus 1252 ~ 1252 (1320)
T PLN03188 1252 V 1252 (1320)
T ss_pred H
Confidence 4
No 351
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=23.51 E-value=7.4e+02 Score=26.34 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=13.4
Q ss_pred CCCCCCCCCchHHHHHHH---HHHHHHHHhHh
Q 007155 58 SAQVQPRPVPDVAELLRL---VEELRERESLL 86 (615)
Q Consensus 58 ~~qv~~~~spevlElLRr---VeeLeerls~L 86 (615)
+-|+--| .+-+-+++.| ++.|..+...+
T Consensus 153 ngq~l~G-d~l~~eLqkr~~~v~~l~~q~~k~ 183 (289)
T COG4985 153 NGQELDG-DPLERELQKRLLEVETLRDQVDKM 183 (289)
T ss_pred CCCcccC-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555554 3445565555 34444443333
No 352
>PRK04406 hypothetical protein; Provisional
Probab=23.50 E-value=3.4e+02 Score=23.48 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=5.2
Q ss_pred HHHHHHHhHHHHH
Q 007155 106 LESEIAAKNTELE 118 (615)
Q Consensus 106 LE~ELeqkekELE 118 (615)
+|..+.+++..+-
T Consensus 9 le~Ri~~LE~~lA 21 (75)
T PRK04406 9 LEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 353
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.48 E-value=1e+03 Score=26.25 Aligned_cols=7 Identities=57% Similarity=1.032 Sum_probs=4.5
Q ss_pred HHHHHHH
Q 007155 76 VEELRER 82 (615)
Q Consensus 76 VeeLeer 82 (615)
+++++++
T Consensus 283 medlReq 289 (406)
T KOG3859|consen 283 MEDLREQ 289 (406)
T ss_pred HHHHhhh
Confidence 5666665
No 354
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.35 E-value=4e+02 Score=30.65 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 007155 144 EREKKMKEMEQ 154 (615)
Q Consensus 144 EaeeRisELEk 154 (615)
+..++|.++..
T Consensus 386 ~ytqrikEi~g 396 (521)
T KOG1937|consen 386 VYTQRIKEIDG 396 (521)
T ss_pred HHHHHHHHHHh
Confidence 34444444433
No 355
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.32 E-value=5.2e+02 Score=28.01 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=12.6
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFK 122 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrE 122 (615)
+++-..|..|+.+|.....+++...+
T Consensus 11 ~et~~~V~~m~~~L~~~~~~L~~k~~ 36 (344)
T PF12777_consen 11 KETEEQVEEMQEELEEKQPELEEKQK 36 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544333
No 356
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.21 E-value=5.9e+02 Score=30.77 Aligned_cols=90 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 007155 67 PDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKRERE 146 (615)
Q Consensus 67 pevlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEae 146 (615)
++-.++.+...++...+.+++...-.+++|+|.. ..+..+..+++.++..+..++.++.++..++..-+.--.
T Consensus 251 qel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~-------e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~ 323 (716)
T KOG4593|consen 251 QELEELERALSQLREELATLRENRETVGLLQEEL-------EGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQ 323 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q ss_pred H--HHHHHHHHHHHHHHHh
Q 007155 147 K--KMKEMEQEIEELKKAA 163 (615)
Q Consensus 147 e--RisELEkqL~ELeKe~ 163 (615)
. .+...+..+..+...+
T Consensus 324 ~~~~~~~~~~~~~~~~~e~ 342 (716)
T KOG4593|consen 324 EMGSLRTPEDLMEKLVNEQ 342 (716)
T ss_pred hhhccCCHHHHHHHHHHHH
No 357
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=23.09 E-value=9.5e+02 Score=27.90 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.2
Q ss_pred HhhhhhHH
Q 007155 100 AAIVPVLE 107 (615)
Q Consensus 100 ~~kl~eLE 107 (615)
++++.+|+
T Consensus 361 vDiinkLk 368 (527)
T PF15066_consen 361 VDIINKLK 368 (527)
T ss_pred HHHHHHHH
Confidence 33444443
No 358
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=23.07 E-value=8.8e+02 Score=32.66 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=5.6
Q ss_pred HHHHHHHhHhHhHH
Q 007155 77 EELRERESLLKTEL 90 (615)
Q Consensus 77 eeLeerls~Lr~Ef 90 (615)
++|...+.+++..+
T Consensus 808 ~eL~~el~~lk~kl 821 (1822)
T KOG4674|consen 808 KELERELQKLKKKL 821 (1822)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 359
>PRK11020 hypothetical protein; Provisional
Probab=23.05 E-value=4.1e+02 Score=25.12 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=27.0
Q ss_pred HHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHh
Q 007155 79 LRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKK 123 (615)
Q Consensus 79 Leerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk 123 (615)
|..++..++..+-... ...-.+++..++.|+..++++++.++..
T Consensus 10 L~drLD~~~~Klaaa~-~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 10 LSDRLDAIRHKLAAAS-LRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554433 2233467788888888888888877643
No 360
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=22.92 E-value=1.1e+03 Score=26.88 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCCcchhhHhHHHH--HHhhhhhhhhhhcccccchhhHHHHHHHHhhccccChhhhhhhh-----hhhHHHHhHHHhHHH
Q 007155 363 VLPATSNARDMIGE--IENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTDIEDVVPFV-----KWLDDELSYLVDERA 435 (615)
Q Consensus 363 ~~~~k~~~~DL~~E--LenrSs~l~aiK~DVEd~~k~IkkL~kELrvld~kd~eeV~~fv-----~wvDeeL~~l~de~~ 435 (615)
+.....+...++.. +......+.....+++.-.++...+.+..... ...|.+|+ +|=.-.......+..
T Consensus 295 ~~~~~eea~~lv~~~~~plv~~~q~~~e~~le~l~~~~E~~a~~~~~~----~~~L~~f~~~~~~lwd~h~~~l~~~e~~ 370 (473)
T PF14643_consen 295 KACTEEEAEELVNPEFLPLVGELQSEFEEELEKLDKSFEELAKQTEAQ----SEDLFKFFQEAAQLWDEHRKKLSKQEEE 370 (473)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCCCchHHHHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhhhccCC
Q 007155 436 VLKHFDWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRYRGFQI 515 (615)
Q Consensus 436 VLK~Fp~PekkldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~~~~~i 515 (615)
|.+.+.---.+++....... ..|+.+...|..-..++ -+...|.+...+|+.||. .|..|
T Consensus 371 l~~~l~~~r~~~~~~~q~~E--~~Ld~~~d~lRq~s~ee--~L~~~l~~~~~~Ld~Ie~--------------~Y~~f-- 430 (473)
T PF14643_consen 371 LEKRLEQCREKHDQENQEKE--AKLDIALDRLRQASSEE--KLKEHLEKALDLLDQIEE--------------EYEDF-- 430 (473)
T ss_pred HHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHH--------------HHHHH--
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 516 PMDWMLETGIVSQIKLASVKLAMKYMKRVSAELET 550 (615)
Q Consensus 516 p~~wm~d~gi~~~ik~~sv~lA~~~~krv~~e~~~ 550 (615)
-...+..++.|=.-|..|+++
T Consensus 431 --------------h~~~~~~~~~yP~~i~~e~~~ 451 (473)
T PF14643_consen 431 --------------HKKQTAIVMEYPEMILKELES 451 (473)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHH
No 361
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.83 E-value=1.1e+03 Score=27.49 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=6.2
Q ss_pred hhhhcceee
Q 007155 563 QGVRFAFRV 571 (615)
Q Consensus 563 q~~~fafrv 571 (615)
+.++||=|-
T Consensus 500 ~~iQYaNRY 508 (560)
T PF06160_consen 500 QLIQYANRY 508 (560)
T ss_pred HHHHHHhcc
Confidence 667777665
No 362
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.74 E-value=4.4e+02 Score=26.30 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007155 144 EREKKMKEMEQEIEELK 160 (615)
Q Consensus 144 EaeeRisELEkqL~ELe 160 (615)
|...++..||..+..++
T Consensus 129 e~~~~l~~le~~~~~~e 145 (175)
T PRK13182 129 EMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445556666665544
No 363
>PF14282 FlxA: FlxA-like protein
Probab=22.64 E-value=2.5e+02 Score=25.57 Aligned_cols=18 Identities=11% Similarity=0.434 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007155 146 EKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 146 eeRisELEkqL~ELeKe~ 163 (615)
..++..|..+|..|+...
T Consensus 50 ~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 50 QQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444
No 364
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=22.60 E-value=1.2e+02 Score=34.07 Aligned_cols=44 Identities=30% Similarity=0.586 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC-------------------------------CCCCCCCCCCCCCCCCC
Q 007155 270 VPNPPPKPSSSSSLPADNKLSAGKQFPPPPPP-------------------------------PPSAPKPLPAPAKSAPP 318 (615)
Q Consensus 270 ~~~pp~~~s~~~~~~~~~~~~~~~~~pp~~p~-------------------------------pp~~p~~~~~~~~~~pp 318 (615)
..+|+++++..+..+ +||.||. |+|.||.|...++||+|
T Consensus 469 ~~~p~~p~~~~~pls----------~PPlPPr~dl~~~~l~~~~~s~~~~~~k~l~~v~~~g~~lp~~~~~qr~PpppaP 538 (563)
T KOG1785|consen 469 DASPSIPSVDEPPLS----------LPPLPPRLDLTLDTLNSSQTSSSGVNIKELENVETSGKPLPAPPNPQRDPPPPAP 538 (563)
T ss_pred hccCCCCccccCCCC----------CCCCCCCccccccccCCCCCCCCCcchhhhhcccccCCCCCCCCCcccCCCCCCC
Q ss_pred CCCCC
Q 007155 319 PPPPP 323 (615)
Q Consensus 319 ppppP 323 (615)
+-||+
T Consensus 539 ~rpp~ 543 (563)
T KOG1785|consen 539 PRPPR 543 (563)
T ss_pred CCCCC
No 365
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.58 E-value=6.4e+02 Score=25.97 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhh----hHHHHHHHhHHHHHHHHHhHHHH
Q 007155 72 LLRLVEELRERESLLKTELVEHKLVKASAAIVP----VLESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~klekEa~~kl~----eLE~ELeqkekELE~LrEk~EEL 127 (615)
+..||+.-++-+...+.+|.. -+-..-..+. +||..-..++.+.+..++..+++
T Consensus 26 lvdrVe~Ardsq~eaqeQF~s--ALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V 83 (201)
T PF11172_consen 26 LVDRVEDARDSQQEAQEQFKS--ALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEV 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655555556666644 1111111121 66777777777777665554443
No 366
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=22.57 E-value=97 Score=30.88 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=18.5
Q ss_pred hHHHHHHHHhhccccChhhhhhhhhh
Q 007155 397 FIRYLIKEVESAAFTDIEDVVPFVKW 422 (615)
Q Consensus 397 ~IkkL~kELrvld~kd~eeV~~fv~w 422 (615)
.|..=|.+.+.++..+.+.|..|+..
T Consensus 6 ~I~~AD~~gRyl~~~eL~~l~~~~~~ 31 (170)
T TIGR01339 6 VVSQADARGEFISSSQIDALSKLVAD 31 (170)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 35556777777777777888777755
No 367
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=22.19 E-value=8.5e+02 Score=24.88 Aligned_cols=62 Identities=27% Similarity=0.327 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
.+.+||.+--........-.+...-++.+-.+|+..|+.+.......-.++++.+..|..+.
T Consensus 114 ~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~ 175 (192)
T PF09727_consen 114 TIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEER 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556554333322222222333345666666666666444444444445555555555443
No 368
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=22.17 E-value=7.9e+02 Score=27.41 Aligned_cols=23 Identities=9% Similarity=0.071 Sum_probs=15.2
Q ss_pred hhcccccchhhHHHHHHHHhhcc
Q 007155 387 IKTDVETQGDFIRYLIKEVESAA 409 (615)
Q Consensus 387 iK~DVEd~~k~IkkL~kELrvld 409 (615)
|.-..++.+-.++.+.|.+++|-
T Consensus 256 IvV~cQderSQ~kNk~kAmkvL~ 278 (363)
T COG0216 256 IVVECQDERSQHKNKAKAMKVLR 278 (363)
T ss_pred eEEEecchhhhhhhHHHHHHHHH
Confidence 44445666666777888887764
No 369
>PF13864 Enkurin: Calmodulin-binding
Probab=22.06 E-value=1.7e+02 Score=26.11 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 007155 148 KMKEMEQEIEEL 159 (615)
Q Consensus 148 RisELEkqL~EL 159 (615)
++.++|..|..+
T Consensus 82 ~L~qlE~dI~~l 93 (98)
T PF13864_consen 82 ELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 370
>PF15605 Toxin_52: Putative toxin 52
Probab=21.89 E-value=1.7e+02 Score=27.04 Aligned_cols=48 Identities=17% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHHHHHhcccchhhHHHhhccccCCCCCc------hHHHHHHHHHHHHHHHh
Q 007155 447 ADALREAAFGYFDLKKVETEASSFHDDARQP------CGLAFKKMQALLEKLEH 494 (615)
Q Consensus 447 ldaLreaa~~Y~dL~eLeseLssfkddp~~P------~~~aLkKm~~~l~K~e~ 494 (615)
++.+.+....|.-|.+....|+....||+.+ +...|.+.-.+++|||.
T Consensus 46 wdHlqEm~da~~GL~n~~~~le~~L~np~l~~~~r~~lq~~l~ea~~~l~kiE~ 99 (103)
T PF15605_consen 46 WDHLQEMQDAYRGLVNRKRTLEGSLKNPNLSGRTRELLQSKLNEANNYLDKIED 99 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999998877788744 45666777777777765
No 371
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.85 E-value=4.3e+02 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHhHhHHHH
Q 007155 71 ELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle 92 (615)
++-.++.++++++..+..++.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~ 26 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGA 26 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665555544
No 372
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=21.75 E-value=1.2e+03 Score=26.95 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQE 155 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkq 155 (615)
.+.|.+++..|+-.+-+ -.|++.-..+|=..|...+.-....++.....+.++.++..++++..+.-+..+..|.+.
T Consensus 405 r~~l~~eNk~L~~QLrD---TAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq~ 481 (488)
T PF06548_consen 405 RRFLKDENKGLQIQLRD---TAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQY 481 (488)
T ss_pred HHHHHHHhHHHHHHHHh---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555533 245555555665555554444455566677778888888888886666555555555444
Q ss_pred H
Q 007155 156 I 156 (615)
Q Consensus 156 L 156 (615)
+
T Consensus 482 l 482 (488)
T PF06548_consen 482 L 482 (488)
T ss_pred H
Confidence 4
No 373
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=21.71 E-value=7.5e+02 Score=30.15 Aligned_cols=69 Identities=23% Similarity=0.221 Sum_probs=41.3
Q ss_pred CCCCchHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHH---HHHHHHHHHHHHhh
Q 007155 63 PRPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIE---SLQCENERLKEMLE 139 (615)
Q Consensus 63 ~~~spevlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~E---ELEeE~~rLk~eLd 139 (615)
|+..-+-.+.+-+ +.+..+.|+.|++.. +++ +-.-|..+|-.+..|++.++++.. .+..++..|..+.+
T Consensus 850 nttt~eh~eall~--QreGElthlq~e~~~--le~----~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~ 921 (961)
T KOG4673|consen 850 NTTTSEHYEALLR--QREGELTHLQTELAS--LES----IRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYA 921 (961)
T ss_pred CCchHHHHHHHHH--hhcchHHHHHHHHHH--HHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4433444444443 578889999999866 432 233455677777777777766543 34555555555554
No 374
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.43 E-value=3.9e+02 Score=25.33 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 70 AELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 70 lElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
-++..|++..++.....+..+.+ -..++.+|.....+....++.++.+..++...+.++-..++
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~------i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKE------INDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp -------------HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444443433333333 22344555444455556666666666666555554444443
No 375
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.35 E-value=9.3e+02 Score=26.99 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.0
Q ss_pred HHHHHHHHhHhHh
Q 007155 76 VEELRERESLLKT 88 (615)
Q Consensus 76 VeeLeerls~Lr~ 88 (615)
+.+++.++..+..
T Consensus 256 l~~l~~~l~~l~~ 268 (498)
T TIGR03007 256 IEALEKQLDALRL 268 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 376
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.31 E-value=6.1e+02 Score=22.89 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=12.7
Q ss_pred CchHHHHHHHHHHHHHHHhHhHhHH
Q 007155 66 VPDVAELLRLVEELRERESLLKTEL 90 (615)
Q Consensus 66 spevlElLRrVeeLeerls~Lr~Ef 90 (615)
||++-+++..+..+++++..+....
T Consensus 2 ~~~~q~~~~~~q~~q~~~~~l~~q~ 26 (110)
T TIGR02338 2 PPQVQNQLAQLQQLQQQLQAVATQK 26 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544444433
No 377
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=21.30 E-value=1.3e+03 Score=27.24 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=17.9
Q ss_pred hhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 104 PVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 104 ~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.-+..+|..+.+|+.+..|....|..++..+..++.
T Consensus 215 ~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 215 RSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333445555555555555555555555544444443
No 378
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=21.28 E-value=1.1e+02 Score=29.97 Aligned_cols=94 Identities=14% Similarity=0.210 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHh-------hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 007155 68 DVAELLRLVEELRERESLLKTELVEHKLVKASAA-------IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQ 140 (615)
Q Consensus 68 evlElLRrVeeLeerls~Lr~Efle~klekEa~~-------kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLde 140 (615)
+......+.+++..++..+....-..+ |..+-. .|..+|++.......... .+.....+.+...+...+++
T Consensus 26 ~~~afk~r~d~~~~~v~~~pe~pp~ID-wa~Yk~~l~~~~~lVD~feK~y~s~kip~p~-d~~~~~i~~~e~~~~~~~~~ 103 (161)
T PF05873_consen 26 QFQAFKKRSDEYKRRVSKLPEQPPKID-WAHYKSVLKENPGLVDEFEKQYESFKIPYPV-DKQTKEIDAQEKEAIKEAKE 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SS------HHHHHHC-S-STTHHHHHHHHHCC---------TTTTHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHhhhhHHHHHHHHHHHhccCCCCCh-HHHHHHHHHHHHHHHHHHHH
Confidence 344455556777777776666663322 222222 233445555554433322 22333445555556666667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 007155 141 NKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 141 eEqEaeeRisELEkqL~ELeKe~ 163 (615)
...+...++.+|++++..++...
T Consensus 104 ~~~~s~~~i~~l~keL~~i~~~~ 126 (161)
T PF05873_consen 104 FEAESKKRIAELEKELANIESAR 126 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 77788888888888888777654
No 379
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.12 E-value=5.4e+02 Score=22.14 Aligned_cols=7 Identities=43% Similarity=0.601 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 007155 106 LESEIAA 112 (615)
Q Consensus 106 LE~ELeq 112 (615)
||..+.+
T Consensus 9 LE~ki~~ 15 (72)
T PF06005_consen 9 LEEKIQQ 15 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 380
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.03 E-value=1.3e+03 Score=26.44 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=7.2
Q ss_pred CcchhhHhHHHHHH
Q 007155 365 PATSNARDMIGEIE 378 (615)
Q Consensus 365 ~~k~~~~DL~~ELe 378 (615)
.++..-..|.-||.
T Consensus 393 sgg~~~p~LYfEiR 406 (420)
T COG4942 393 SGGQGRPALYFEIR 406 (420)
T ss_pred CCCCCCcchhhhhh
Confidence 34455555555553
No 381
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=21.02 E-value=1.1e+03 Score=28.09 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=16.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007155 132 ERLKEMLEQNKREREKKMKEMEQEIEELKK 161 (615)
Q Consensus 132 ~rLk~eLdeeEqEaeeRisELEkqL~ELeK 161 (615)
......|.+.+.....++..+|..|..|.+
T Consensus 181 ~e~e~~L~~~~~~~~~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 181 AEREAGLKDEEQNLQEQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555556666666666643
No 382
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=20.97 E-value=7.4e+02 Score=24.30 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=18.0
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHH
Q 007155 100 AAIVPVLESEIAAKNTELELSFK 122 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrE 122 (615)
..++..++..|.++.+|+..|+.
T Consensus 60 ~~~v~~~~~~i~~k~~El~~L~~ 82 (146)
T PF05852_consen 60 KNKVSSLETEISEKKKELSHLKK 82 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888899999888887654
No 383
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.93 E-value=83 Score=34.66 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=0.0
Q ss_pred cccCCCCCCCC
Q 007155 10 MGLQKSPANPK 20 (615)
Q Consensus 10 ~~~~~~~~~~~ 20 (615)
||=++.+.+-.
T Consensus 1 ~g~~~~~~~~n 11 (370)
T PF02994_consen 1 MGKRKNRSNRN 11 (370)
T ss_dssp -----------
T ss_pred CCcccCCcccc
Confidence 55566655433
No 384
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.92 E-value=6.4e+02 Score=22.91 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHh--HHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007155 72 LLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAK--NTELELSFKKIESLQCENERLKEMLEQNKREREKKM 149 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqk--ekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRi 149 (615)
.+++.--.......+..++.... .++..+|+++... ..++..++-.+.+++.++..+..+++.......-.+
T Consensus 26 ~l~~~~a~~~~~~~l~~~~~~~~------~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 26 WLRRTYAKREDIEKLEERLDEHD------RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHhhccHHHHHHHHHHHHHHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 007155 150 KE 151 (615)
Q Consensus 150 sE 151 (615)
..
T Consensus 100 E~ 101 (106)
T PF10805_consen 100 EN 101 (106)
T ss_pred HH
No 385
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.85 E-value=1.2e+03 Score=29.72 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE---QNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd---eeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
.+..||..+.-...+++.++..++..+.++.....+++ ..-.+...++...|..+.+|++....
T Consensus 684 ~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 684 KIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577888888888888888777777666666666555 33456666677777777777766544
No 386
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.85 E-value=8e+02 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=25.1
Q ss_pred HHHHHhHhHhHHHHH--HHHHHHHhhhhhHHHHHHHhHHHHHHHHH
Q 007155 79 LRERESLLKTELVEH--KLVKASAAIVPVLESEIAAKNTELELSFK 122 (615)
Q Consensus 79 Leerls~Lr~Efle~--klekEa~~kl~eLE~ELeqkekELE~LrE 122 (615)
.+.+++.|..++.++ +...|....+..|+.++.....-.+.+++
T Consensus 40 yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e 85 (291)
T KOG4466|consen 40 YKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYRE 85 (291)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666665332 23567777888887666654444444443
No 387
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=20.84 E-value=1.6e+03 Score=27.39 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=45.1
Q ss_pred hhhHHHhhccccCCCCCchHHHHHHHHHH-----HHHHHhhh---hhhhhchHH--HhhhhhccCCCchhhhhh---hhH
Q 007155 460 LKKVETEASSFHDDARQPCGLAFKKMQAL-----LEKLEHGV---YNLSRMRES--ATKRYRGFQIPMDWMLET---GIV 526 (615)
Q Consensus 460 L~eLeseLssfkddp~~P~~~aLkKm~~~-----l~K~e~~v---~~l~r~r~~--~~~~~~~~~ip~~wm~d~---gi~ 526 (615)
+.++...+..|.-+. ...+.++.++... -.|++..+ .-+.++||- ..=||-+.|+|--|=-.- +|.
T Consensus 469 ~~~~~~~~~~f~~s~-~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe~g~PRvW~~eddI~~if 547 (742)
T PF05879_consen 469 VSKFSDRLKGFGLSE-EENEKALKKLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIF 547 (742)
T ss_pred HHHHHHHhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHH
Confidence 355666777775432 3566666666544 34454444 334455554 444899999999995221 334
Q ss_pred HHHHHHHHHHH
Q 007155 527 SQIKLASVKLA 537 (615)
Q Consensus 527 ~~ik~~sv~lA 537 (615)
.+=|+++++|=
T Consensus 548 ~~ARe~AL~LL 558 (742)
T PF05879_consen 548 RKAREHALKLL 558 (742)
T ss_pred HHHHHHHHHHH
Confidence 55567777653
No 388
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=20.84 E-value=4.7e+02 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=8.8
Q ss_pred HHHHHHHHhHhHhHHHH
Q 007155 76 VEELRERESLLKTELVE 92 (615)
Q Consensus 76 VeeLeerls~Lr~Efle 92 (615)
+..|++.+.|++-++.+
T Consensus 19 l~~LqDE~~hm~~e~~~ 35 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQE 35 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 389
>CHL00173 cpeA phycoerythrin alpha subunit; Provisional
Probab=20.82 E-value=4.5e+02 Score=26.05 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=19.5
Q ss_pred hHHHHHHHHhhccccChhhhhhhhhhhHH
Q 007155 397 FIRYLIKEVESAAFTDIEDVVPFVKWLDD 425 (615)
Q Consensus 397 ~IkkL~kELrvld~kd~eeV~~fv~wvDe 425 (615)
.|..=|.+.|.++..+.+.|..|+.+-+.
T Consensus 8 ~i~~AD~~gRyls~~eL~~l~~~~~~a~~ 36 (164)
T CHL00173 8 TISAADAAGRFPSSSDLESVQGNIQRAAA 36 (164)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 35556777777777777777777755333
No 390
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.74 E-value=7.5e+02 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=8.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 007155 114 NTELELSFKKIESLQCENERLKE 136 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rLk~ 136 (615)
|.||+-+-.+...+..++..++.
T Consensus 272 NnqL~~l~q~fr~a~~~lse~~e 294 (384)
T KOG0972|consen 272 NNQLASLMQKFRRATDTLSELRE 294 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444333333333333433333
No 391
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.69 E-value=7.1e+02 Score=30.21 Aligned_cols=35 Identities=37% Similarity=0.372 Sum_probs=14.3
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.++.++.+...+++.++.....+++++.+|+.++.
T Consensus 584 ~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 584 QIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444333444444444444443
No 392
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=20.68 E-value=5.4e+02 Score=31.39 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHHHHHHhHhH---hHHHHHHHHHHHHhhhh-hHHHHHHH
Q 007155 67 PDVAELLRLVEELRERESLLK---TELVEHKLVKASAAIVP-VLESEIAA 112 (615)
Q Consensus 67 pevlElLRrVeeLeerls~Lr---~Efle~klekEa~~kl~-eLE~ELeq 112 (615)
....+++.+++.|++++...+ +.... -+++|.+++|. +++.++..
T Consensus 429 ~~~~~Le~elekLk~eilKAk~s~~~~~~-~~L~e~IeKLk~E~d~e~S~ 477 (762)
T PLN03229 429 TPVRELEGEVEKLKEQILKAKESSSKPSE-LALNEMIEKLKKEIDLEYTE 477 (762)
T ss_pred CCCccHHHHHHHHHHHHHhcccccCCCCC-hHHHHHHHHHHHHHHHHHHH
Confidence 336677777777777777664 11111 24566666655 34444433
No 393
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=20.61 E-value=3.9e+02 Score=29.38 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=4.3
Q ss_pred cccccccC
Q 007155 46 FSRSFGVY 53 (615)
Q Consensus 46 ~~~~~g~~ 53 (615)
|.|-||.-
T Consensus 108 ~d~f~gig 115 (372)
T COG3524 108 FDRFNGIG 115 (372)
T ss_pred ccccccCC
Confidence 56655543
No 394
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.49 E-value=4e+02 Score=29.59 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007155 107 ESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKK 161 (615)
Q Consensus 107 E~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeK 161 (615)
+.-+..++.+++.+.++++++++.+.... ..+....+..+.+..+++++.+++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443322211 1122223344444445555555444
No 395
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=20.49 E-value=1e+03 Score=25.74 Aligned_cols=33 Identities=27% Similarity=0.153 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
+|.+||.+|.-....-+.++...++|-+.+..|
T Consensus 237 ria~Le~eLAmQKs~seElkssq~eL~dfm~eL 269 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQEELYDFMEEL 269 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Confidence 566777776654444444444444443333333
No 396
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.42 E-value=6.4e+02 Score=22.76 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHhHhHHH
Q 007155 72 LLRLVEELRERESLLKTELV 91 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efl 91 (615)
..|.+...+..+...+.++.
T Consensus 5 kkre~~~~~~~l~~kr~e~~ 24 (126)
T PF13863_consen 5 KKREMFLVQLALDTKREEIE 24 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444443
No 397
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=20.42 E-value=7.9e+02 Score=23.81 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHH
Q 007155 126 SLQCENERLKEMLEQNKREREK 147 (615)
Q Consensus 126 ELEeE~~rLk~eLdeeEqEaee 147 (615)
+||.+...|..+++....|...
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~ 99 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSR 99 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444333
No 398
>CHL00171 cpcB phycocyanin beta subunit; Reviewed
Probab=20.38 E-value=83 Score=31.33 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=18.0
Q ss_pred hhhccCCCchhhhhhhhHHHHHHHHHHH
Q 007155 509 RYRGFQIPMDWMLETGIVSQIKLASVKL 536 (615)
Q Consensus 509 ~~~~~~ip~~wm~d~gi~~~ik~~sv~l 536 (615)
-|+..|+|..||.. =+..||.+++++
T Consensus 116 ~Y~~lgvP~~~~i~--al~~mk~~al~~ 141 (172)
T CHL00171 116 TYQALGVPGSSVAV--AVQKMKEAAVSL 141 (172)
T ss_pred HHHHhCCCchHHHH--HHHHHHHHHHHH
Confidence 79999999999765 344455555444
No 399
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=20.32 E-value=9.2e+02 Score=28.06 Aligned_cols=11 Identities=9% Similarity=0.132 Sum_probs=5.6
Q ss_pred hhHHHhhcccc
Q 007155 461 KKVETEASSFH 471 (615)
Q Consensus 461 ~eLeseLssfk 471 (615)
+.+.+-|..+.
T Consensus 540 ~~~~~alE~ve 550 (569)
T PRK04778 540 EIIATALEKVE 550 (569)
T ss_pred HHHHHHHHhhC
Confidence 33445555555
No 400
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=20.31 E-value=2.1e+02 Score=32.41 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=8.3
Q ss_pred chhhHhHHHHHHhhhhh
Q 007155 367 TSNARDMIGEIENRSAH 383 (615)
Q Consensus 367 k~~~~DL~~ELenrSs~ 383 (615)
.--+.+|.+.+..+...
T Consensus 260 ~~l~a~~~~~~~~~~k~ 276 (409)
T KOG4590|consen 260 ASLMAEMAKRLARRRKT 276 (409)
T ss_pred hhhhhhhhhccceeccc
Confidence 33344555555444443
Done!