Query 007155
Match_columns 615
No_of_seqs 421 out of 536
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 93.2 0.97 3.3E-05 44.0 12.4 106 76-183 19-125 (189)
2 2dfs_A Myosin-5A; myosin-V, in 87.9 4.5 0.00015 48.5 14.0 19 69-87 930-948 (1080)
3 3obv_E Protein diaphanous homo 86.8 0.42 1.4E-05 52.0 4.1 100 364-464 33-152 (457)
4 2dfs_A Myosin-5A; myosin-V, in 86.0 2.9 9.8E-05 50.2 11.0 31 105-135 988-1018(1080)
5 3mq9_A Bone marrow stromal ant 85.5 8.5 0.00029 40.9 13.4 70 96-165 392-461 (471)
6 2v66_B Nuclear distribution pr 85.0 20 0.00068 32.1 13.3 86 71-158 7-102 (111)
7 3o0z_A RHO-associated protein 84.4 27 0.00093 33.3 14.7 49 101-149 90-138 (168)
8 3ghg_A Fibrinogen alpha chain; 83.5 10 0.00035 42.0 12.9 69 71-141 61-129 (562)
9 3na7_A HP0958; flagellar bioge 80.9 13 0.00044 36.9 11.8 34 127-160 130-163 (256)
10 3hnw_A Uncharacterized protein 79.8 29 0.00098 31.9 12.7 67 71-139 29-99 (138)
11 2v71_A Nuclear distribution pr 77.4 37 0.0013 32.9 13.3 56 103-158 90-155 (189)
12 4h22_A Leucine-rich repeat fli 76.2 23 0.00078 31.3 10.3 66 97-162 12-80 (103)
13 3tnu_B Keratin, type II cytosk 74.6 19 0.00063 32.4 9.8 16 124-139 84-99 (129)
14 3oja_B Anopheles plasmodium-re 73.1 18 0.0006 39.4 11.1 13 127-139 542-554 (597)
15 3tnu_A Keratin, type I cytoske 72.4 20 0.00067 32.4 9.4 17 123-139 85-101 (131)
16 2ic9_A Nucleocapsid protein; h 72.4 8.9 0.0003 33.5 6.7 80 100-179 4-92 (96)
17 3hnw_A Uncharacterized protein 70.5 26 0.00088 32.2 9.9 54 110-163 77-133 (138)
18 3i00_A HIP-I, huntingtin-inter 70.4 28 0.00095 31.4 9.8 62 76-139 17-78 (120)
19 4gkw_A Spindle assembly abnorm 70.3 68 0.0023 29.6 13.9 60 69-128 13-73 (167)
20 2k48_A Nucleoprotein; viral pr 68.6 19 0.00064 32.0 7.9 70 97-166 31-101 (107)
21 3s4r_A Vimentin; alpha-helix, 67.3 59 0.002 27.8 11.4 43 99-141 21-68 (93)
22 4fi5_A Nucleoprotein; structur 64.2 15 0.0005 33.0 6.5 29 102-130 23-51 (113)
23 2no2_A HIP-I, huntingtin-inter 61.4 85 0.0029 27.6 11.4 20 70-89 4-23 (107)
24 3u1c_A Tropomyosin alpha-1 cha 60.7 82 0.0028 27.2 11.9 28 111-138 40-67 (101)
25 1deq_A Fibrinogen (alpha chain 59.3 95 0.0033 33.2 12.7 17 123-139 114-130 (390)
26 2ic6_A Nucleocapsid protein; h 59.3 32 0.0011 29.0 7.3 68 100-167 4-72 (78)
27 3mq9_A Bone marrow stromal ant 59.3 1.6E+02 0.0053 31.1 14.8 19 103-121 406-424 (471)
28 1deb_A APC protein, adenomatou 58.6 32 0.0011 26.8 6.6 36 72-113 8-43 (54)
29 2ocy_A RAB guanine nucleotide 57.5 1.3E+02 0.0043 28.3 12.8 22 71-92 10-31 (154)
30 1ic2_A Tropomyosin alpha chain 56.0 85 0.0029 25.9 10.6 39 101-146 20-58 (81)
31 3cve_A Homer protein homolog 1 55.8 87 0.003 25.9 9.9 6 147-152 53-58 (72)
32 1v9d_A Diaphanous protein homo 55.6 5.9 0.0002 41.1 2.9 53 412-465 30-82 (340)
33 3vkg_A Dynein heavy chain, cyt 53.3 95 0.0033 41.7 13.8 32 95-126 1928-1959(3245)
34 3ol1_A Vimentin; structural ge 52.6 1.2E+02 0.0043 26.8 11.3 14 150-163 86-99 (119)
35 3nmd_A CGMP dependent protein 52.1 40 0.0014 28.0 6.7 22 98-119 16-37 (72)
36 3q8t_A Beclin-1; autophagy, AT 51.8 1.2E+02 0.0039 26.1 14.0 28 65-92 2-29 (96)
37 3u1c_A Tropomyosin alpha-1 cha 51.6 1.2E+02 0.004 26.2 12.1 18 101-118 23-40 (101)
38 4dci_A Uncharacterized protein 51.4 92 0.0031 29.1 9.9 62 101-162 36-106 (150)
39 2oqq_A Transcription factor HY 51.0 35 0.0012 25.6 5.5 17 121-137 23-39 (42)
40 3iv1_A Tumor susceptibility ge 50.8 1E+02 0.0035 26.0 9.1 30 110-139 20-49 (78)
41 3a7p_A Autophagy protein 16; c 50.4 1.7E+02 0.0057 27.5 12.4 14 109-122 90-103 (152)
42 3s4r_A Vimentin; alpha-helix, 49.2 1.2E+02 0.0043 25.8 10.5 21 72-92 21-41 (93)
43 3cvf_A Homer-3, homer protein 49.2 1E+02 0.0035 25.9 8.9 6 147-152 59-64 (79)
44 3u59_A Tropomyosin beta chain; 48.7 1.3E+02 0.0044 25.8 11.5 21 113-133 42-62 (101)
45 4etp_A Kinesin-like protein KA 48.6 43 0.0015 35.7 8.2 55 102-160 4-58 (403)
46 1x79_B RAB GTPase binding effe 47.5 1.1E+02 0.0039 27.2 9.5 35 112-146 42-76 (112)
47 3oja_A Leucine-rich immune mol 46.6 1.1E+02 0.0037 32.5 11.0 13 78-90 371-383 (487)
48 2w83_C C-JUN-amino-terminal ki 45.1 1E+02 0.0035 25.9 8.1 18 74-91 9-26 (77)
49 3u59_A Tropomyosin beta chain; 44.4 1.5E+02 0.0051 25.3 11.6 20 101-120 23-42 (101)
50 1t2k_D Cyclic-AMP-dependent tr 44.3 1.1E+02 0.0037 23.9 8.0 8 105-112 26-33 (61)
51 1m1j_A Fibrinogen alpha subuni 44.1 3.2E+02 0.011 29.9 13.9 18 122-139 111-128 (491)
52 3i00_A HIP-I, huntingtin-inter 42.8 1.5E+02 0.0052 26.5 9.7 61 72-134 20-80 (120)
53 2q6q_A Spindle POLE BODY compo 42.8 1.1E+02 0.0037 25.3 7.7 27 105-131 7-33 (74)
54 2j1d_G DAAM1, disheveled-assoc 42.3 17 0.00057 39.6 4.0 52 412-464 111-163 (483)
55 2v66_B Nuclear distribution pr 42.3 1.9E+02 0.0064 25.8 13.6 72 75-149 4-76 (111)
56 3cvf_A Homer-3, homer protein 42.2 73 0.0025 26.8 7.0 10 151-160 56-65 (79)
57 3a7p_A Autophagy protein 16; c 41.6 1.5E+02 0.0051 27.9 9.6 21 70-90 31-51 (152)
58 2wt7_A Proto-oncogene protein 41.2 1.3E+02 0.0044 23.7 8.1 33 102-134 24-56 (63)
59 1i84_S Smooth muscle myosin he 41.1 59 0.002 39.1 8.7 10 76-85 866-875 (1184)
60 1ik9_A DNA repair protein XRCC 41.0 2.6E+02 0.009 27.2 12.3 50 105-157 150-199 (213)
61 3vkg_A Dynein heavy chain, cyt 40.6 1.6E+02 0.0056 39.5 13.1 16 364-379 2357-2372(3245)
62 3mq7_A Bone marrow stromal ant 40.0 2.1E+02 0.0072 25.8 12.8 16 124-139 73-88 (121)
63 4eah_A Formin-like protein 3, 38.7 27 0.00092 37.2 4.7 45 412-457 105-149 (402)
64 1jnm_A Proto-oncogene C-JUN; B 37.2 66 0.0023 25.2 5.7 32 102-133 23-54 (62)
65 2fcw_A Alpha-2-macroglobulin r 37.0 2.3E+02 0.0077 25.3 10.4 31 95-127 12-43 (109)
66 2fxo_A Myosin heavy chain, car 36.5 2.3E+02 0.0079 25.2 13.3 12 128-139 82-93 (129)
67 3s9g_A Protein hexim1; cyclin 36.2 2.1E+02 0.0073 25.1 9.1 40 121-164 43-82 (104)
68 3a7o_A Autophagy protein 16; c 35.6 1.7E+02 0.0057 24.3 7.8 52 82-139 19-70 (75)
69 1yke_B RNA polymerase II holoe 35.1 1.4E+02 0.0048 27.7 8.5 27 135-161 98-124 (151)
70 1ykh_B RNA polymerase II holoe 34.8 1.9E+02 0.0065 26.1 9.1 11 109-119 65-75 (132)
71 3swf_A CGMP-gated cation chann 33.7 1.5E+02 0.0051 24.7 7.4 34 127-160 19-52 (74)
72 1gk4_A Vimentin; intermediate 33.5 1.7E+02 0.0057 24.3 7.9 48 116-163 27-77 (84)
73 2wt7_B Transcription factor MA 33.4 2.3E+02 0.0079 24.3 9.9 45 95-139 42-86 (90)
74 1ci6_A Transcription factor AT 33.4 86 0.003 24.9 5.8 30 105-134 27-56 (63)
75 3ghg_A Fibrinogen alpha chain; 33.0 3.1E+02 0.011 30.6 11.8 23 136-158 120-142 (562)
76 3vp9_A General transcriptional 32.0 94 0.0032 26.9 6.2 55 83-139 16-74 (92)
77 1wt6_A Myotonin-protein kinase 31.8 2.4E+02 0.0081 23.9 8.6 17 144-160 49-65 (81)
78 3lay_A Zinc resistance-associa 31.6 1.5E+02 0.0053 28.1 8.3 19 102-120 86-104 (175)
79 3swy_A Cyclic nucleotide-gated 31.0 1.4E+02 0.0049 22.6 6.3 24 132-155 22-45 (46)
80 1go4_E MAD1 (mitotic arrest de 30.6 1.7E+02 0.0059 25.6 7.7 22 69-90 14-35 (100)
81 1m1j_B Fibrinogen beta chain; 29.9 5.8E+02 0.02 27.8 13.8 17 371-387 300-316 (464)
82 3jsv_C NF-kappa-B essential mo 29.6 2.6E+02 0.009 24.2 8.5 10 152-161 73-82 (94)
83 1nkp_A C-MYC, MYC proto-oncoge 29.1 1.2E+02 0.0039 25.6 6.2 10 150-159 76-85 (88)
84 1nlw_A MAD protein, MAX dimeri 29.0 84 0.0029 26.1 5.3 11 96-106 42-52 (80)
85 3nmd_A CGMP dependent protein 28.7 1.3E+02 0.0045 24.9 6.2 21 102-122 41-61 (72)
86 1ic2_A Tropomyosin alpha chain 28.5 2.4E+02 0.0084 23.1 9.4 38 102-139 28-65 (81)
87 1c1g_A Tropomyosin; contractIl 28.1 3.5E+02 0.012 24.7 13.5 15 76-90 22-36 (284)
88 2lw1_A ABC transporter ATP-bin 27.4 2.5E+02 0.0086 23.3 8.1 14 108-121 29-42 (89)
89 2v4h_A NF-kappa-B essential mo 26.8 3.4E+02 0.012 24.2 11.1 13 150-162 93-105 (110)
90 1zxa_A CGMP-dependent protein 26.5 79 0.0027 25.9 4.5 28 101-128 25-52 (67)
91 3u06_A Protein claret segregat 26.4 1.4E+02 0.0047 31.9 7.7 51 106-160 8-58 (412)
92 2e7s_A RAB guanine nucleotide 26.2 97 0.0033 28.5 5.6 12 151-162 100-111 (135)
93 1g6u_A Domain swapped dimer; d 26.0 90 0.0031 23.2 4.3 9 105-113 24-32 (48)
94 2lw1_A ABC transporter ATP-bin 26.0 1.2E+02 0.004 25.4 5.7 7 76-82 24-30 (89)
95 1gd2_E Transcription factor PA 25.9 1.1E+02 0.0037 25.1 5.3 17 102-118 30-46 (70)
96 1deq_A Fibrinogen (alpha chain 25.9 5.5E+02 0.019 27.4 11.9 11 146-156 147-157 (390)
97 2zqm_A Prefoldin beta subunit 25.8 3E+02 0.01 23.2 11.4 19 67-85 6-24 (117)
98 1x8y_A Lamin A/C; structural p 25.7 1.2E+02 0.004 25.4 5.7 49 115-163 28-79 (86)
99 2yy0_A C-MYC-binding protein; 25.7 1E+02 0.0035 23.9 4.8 23 115-137 26-48 (53)
100 3txn_A 26S proteasome regulato 25.5 3.2E+02 0.011 28.9 10.3 142 366-533 34-186 (394)
101 3trt_A Vimentin; cytoskeleton, 25.5 2.6E+02 0.0089 22.4 10.0 10 66-75 4-13 (77)
102 1j1d_B Troponin T, TNT; THIN f 25.5 1.9E+02 0.0064 25.5 7.1 8 49-56 1-8 (106)
103 3c9i_A Tail needle protein GP2 25.4 4.7E+02 0.016 25.8 10.4 58 102-163 78-135 (242)
104 3qne_A Seryl-tRNA synthetase, 24.1 2.9E+02 0.01 30.2 9.9 63 102-164 34-102 (485)
105 2xv5_A Lamin-A/C; structural p 24.1 3E+02 0.01 22.6 7.7 15 150-164 43-57 (74)
106 2dq0_A Seryl-tRNA synthetase; 24.0 3.6E+02 0.012 29.0 10.5 65 101-165 31-101 (455)
107 1wle_A Seryl-tRNA synthetase; 23.8 3.4E+02 0.012 29.8 10.4 32 102-133 71-102 (501)
108 1m1j_B Fibrinogen beta chain; 23.7 7.4E+02 0.025 27.0 14.3 12 79-90 98-109 (464)
109 2b9c_A Striated-muscle alpha t 23.5 4.3E+02 0.015 24.2 10.0 58 101-158 52-112 (147)
110 1uix_A RHO-associated kinase; 23.0 3.2E+02 0.011 22.5 7.8 19 113-131 9-27 (71)
111 2akf_A Coronin-1A; coiled coil 22.4 87 0.003 21.8 3.3 25 478-502 4-28 (32)
112 3okq_A BUD site selection prot 22.4 4.7E+02 0.016 24.2 11.0 20 72-91 26-45 (141)
113 2xdj_A Uncharacterized protein 22.1 3.5E+02 0.012 22.7 9.2 29 106-134 25-53 (83)
114 2ve7_A Kinetochore protein HEC 21.8 73 0.0025 32.8 4.3 49 116-164 186-234 (315)
115 1go4_E MAD1 (mitotic arrest de 21.6 1.8E+02 0.0061 25.5 6.1 29 105-133 16-44 (100)
116 2f31_A Diaphanous protein homo 21.6 40 0.0014 32.8 2.2 50 77-130 183-232 (233)
117 2pnv_A Small conductance calci 21.5 1.9E+02 0.0066 21.6 5.4 22 141-162 17-38 (43)
118 1wt6_A Myotonin-protein kinase 21.2 3.8E+02 0.013 22.7 8.6 16 149-164 61-76 (81)
119 2w6a_A ARF GTPase-activating p 20.7 3.3E+02 0.011 21.8 7.1 21 114-134 40-60 (63)
120 1ik9_A DNA repair protein XRCC 20.4 5.8E+02 0.02 24.8 10.3 12 78-89 136-147 (213)
121 1x79_B RAB GTPase binding effe 20.3 4.6E+02 0.016 23.3 12.7 14 150-163 73-86 (112)
122 2oqq_A Transcription factor HY 20.1 1.5E+02 0.005 22.3 4.4 13 148-160 18-30 (42)
123 2efr_A General control protein 20.1 5.4E+02 0.018 24.0 12.5 84 74-161 70-154 (155)
124 3uul_A Utrophin; spectrin repe 20.1 3.6E+02 0.012 22.1 10.3 20 103-122 45-64 (118)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.16 E-value=0.97 Score=44.00 Aligned_cols=106 Identities=21% Similarity=0.252 Sum_probs=73.6
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQE 155 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkq 155 (615)
..++..++..++.+|.+ .--.+-+.=.+||.+|.+.++.+..++..+..+..++..++.+++....+....+..|+..
T Consensus 19 ~~~~~q~~~~le~El~E--FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~e 96 (189)
T 2v71_A 19 SMKYKQSFQEARDELVE--FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDD 96 (189)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666777777766 2233444555888899999998888888888999999999999888888888888888888
Q ss_pred HHHHHHHhh-hhhhhhcccccccccchhh
Q 007155 156 IEELKKAAS-ERSKVAELSIESDELSSSQ 183 (615)
Q Consensus 156 L~ELeKe~~-~~~~~~~~~~~~~~~~ss~ 183 (615)
+..|..... ....+.++-..+||.-...
T Consensus 97 l~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 97 LSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888876653 2223333333445554333
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.88 E-value=4.5 Score=48.54 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHhH
Q 007155 69 VAELLRLVEELRERESLLK 87 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr 87 (615)
+.+++.++++++++...+.
T Consensus 930 l~eLq~rL~~~e~~n~~L~ 948 (1080)
T 2dfs_A 930 IMQLQRKIDEQNKEYKSLL 948 (1080)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555544444433333
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=86.76 E-value=0.42 Score=52.01 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCcchhhHhHHHHHHhhhhhhhhhhc---cccc--chh-hHHHHHHHHhhcccc--------------Chhhhhhhhhhh
Q 007155 364 LPATSNARDMIGEIENRSAHLLAIKT---DVET--QGD-FIRYLIKEVESAAFT--------------DIEDVVPFVKWL 423 (615)
Q Consensus 364 ~~~k~~~~DL~~ELenrSs~l~aiK~---DVEd--~~k-~IkkL~kELrvld~k--------------d~eeV~~fv~wv 423 (615)
...+..+.++|.+|+..|+....... ..++ .++ ..+++.++|.+||.+ ++++|...|..+
T Consensus 33 ~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~lLD~kraqNi~I~L~~lk~~~~ei~~aI~~~ 112 (457)
T 3obv_E 33 KEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEV 112 (457)
T ss_dssp CGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHT
T ss_pred ccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeEecCHHHHhHHHHHHhccCCCHHHHHHHHHhC
Confidence 34466668899999999998754221 1111 122 235667788888876 456777777777
Q ss_pred HHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHH
Q 007155 424 DDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVE 464 (615)
Q Consensus 424 DeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLe 464 (615)
|+.....-...++++.+|.++. ...|+++...+.+|...+
T Consensus 113 D~~~L~~e~l~~L~~~~Pt~eE-~~~l~~~~~d~~~L~~~E 152 (457)
T 3obv_E 113 NEAVLTESMIQNLIKQMPEPEQ-LKMLSELKEEYDDLAESE 152 (457)
T ss_dssp CTTTCCHHHHHHHHHHCCCHHH-HHHHHTTTTSGGGSCHHH
T ss_pred CcccCCHHHHHHHHHhCCCHHH-HHHHHHhccChhhcCHHH
Confidence 7764445557899999998877 778888766666665544
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.98 E-value=2.9 Score=50.16 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=11.7
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLK 135 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk 135 (615)
.|+.++...+.+++.+.++.+.+++.+..++
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.49 E-value=8.5 Score=40.88 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=48.7
Q ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 96 VKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 96 ekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
+.|+......|+.+|...++-+-.++.+...-...+-.|..-|+++..+.+.|+.|||.+|.+|+.+...
T Consensus 392 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 392 VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445455555666666666666666665555555666777888877777888899999999998877644
No 6
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=84.99 E-value=20 Score=32.10 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh----------h
Q 007155 71 ELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE----------Q 140 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd----------e 140 (615)
++......|...+..++..+.. ..+|+..-+..|+.++.++..+-+.+...+-+++..|..|.+.-. .
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~--~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEH--QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 4445555566665666666655 345555566677777777777666666666556555544443222 2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 007155 141 NKREREKKMKEMEQEIEE 158 (615)
Q Consensus 141 eEqEaeeRisELEkqL~E 158 (615)
.-..+.++..-||..+.+
T Consensus 85 k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 85 RLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555566666666653
No 7
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.44 E-value=27 Score=33.34 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKM 149 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRi 149 (615)
+.+.+|+..+..+..|++.++.....+..++..|.+++...+.+.-...
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555566666666666666555566666666655554444444333
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.48 E-value=10 Score=41.96 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 007155 71 ELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQN 141 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdee 141 (615)
++..++++|+.++..+..-..+ +..-.-.+..+|..++.+.+..-..+.+-.++|+..+..|+.+|+..
T Consensus 61 DltkrINELKnqLEdlsKnsKd--seqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKD--SHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHH--HHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchh--HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444433 22222234445555555544222223333346666667777766633
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.92 E-value=13 Score=36.95 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 127 LQCENERLKEMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 127 LEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
++..+..+...+.....+....+.+++..+..|.
T Consensus 130 ~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 130 LKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444443
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.77 E-value=29 Score=31.92 Aligned_cols=67 Identities=15% Similarity=0.030 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHhHhH--HHHHHHHHHHHhhhhhH--HHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 71 ELLRLVEELRERESLLKTE--LVEHKLVKASAAIVPVL--ESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~E--fle~klekEa~~kl~eL--E~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
-++.....++.++..++.. +-.... +-++++..| -.++.+...+.+.++..++++..++..|+.++.
T Consensus 29 ~L~~vA~~vd~km~ei~~~~~~~~l~~--~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKEESYRRMSA--ELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777744 422112 223344433 555555566666666666655555555555544
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.36 E-value=37 Score=32.92 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=25.4
Q ss_pred hhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHHHH
Q 007155 103 VPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE----------QNKREREKKMKEMEQEIEE 158 (615)
Q Consensus 103 l~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd----------eeEqEaeeRisELEkqL~E 158 (615)
+..|+.++.++....+.++..+-+++..|..+.+... ..-..+.+++.-||..+.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333332221 2334555556666666654
No 12
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=76.24 E-value=23 Score=31.33 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=49.4
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHH
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKM---KEMEQEIEELKKA 162 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRi---sELEkqL~ELeKe 162 (615)
+.+|-..+.|+|+=..+.=|++.++..++++++.+..++++++++-++.+... ..|..++..|..+
T Consensus 12 rKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 12 KKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888888888889999999999999999999999987766665553 3444444444433
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.61 E-value=19 Score=32.40 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 007155 124 IESLQCENERLKEMLE 139 (615)
Q Consensus 124 ~EELEeE~~rLk~eLd 139 (615)
+..++.++..++..+.
T Consensus 84 i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 84 LAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH
Confidence 3334444444443333
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.13 E-value=18 Score=39.35 Aligned_cols=13 Identities=38% Similarity=0.501 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhh
Q 007155 127 LQCENERLKEMLE 139 (615)
Q Consensus 127 LEeE~~rLk~eLd 139 (615)
++.++.+++++++
T Consensus 542 ~~~~~~~le~~~~ 554 (597)
T 3oja_B 542 LEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHh
Confidence 3344444444444
No 15
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.42 E-value=20 Score=32.38 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHhh
Q 007155 123 KIESLQCENERLKEMLE 139 (615)
Q Consensus 123 k~EELEeE~~rLk~eLd 139 (615)
.+..++.++..++..+.
T Consensus 85 ~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 85 MIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 16
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=72.36 E-value=8.9 Score=33.52 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=35.0
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh
Q 007155 100 AAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE--------QNKREREKKMKEMEQEIEELKKAASERSK-VA 170 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd--------eeEqEaeeRisELEkqL~ELeKe~~~~~~-~~ 170 (615)
|.-|.+|+.++.+.+.+|...+.++.+.+.....--.+++ ..-.-.+.++.+|..++..+...+..... .-
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k~~~k~~D 83 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQKLASKPVD 83 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 3455666677777777776665555444333322111111 13345556666777777666655432221 11
Q ss_pred ccccccccc
Q 007155 171 ELSIESDEL 179 (615)
Q Consensus 171 ~~~~~~~~~ 179 (615)
-+..|.||+
T Consensus 84 pTG~EpdDh 92 (96)
T 2ic9_A 84 PTGIEPDDH 92 (96)
T ss_dssp ---------
T ss_pred CCCCCCccc
Confidence 134455655
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.52 E-value=26 Score=32.21 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=24.9
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHh
Q 007155 110 IAAKNTELELSFKKIESLQCENERLKEMLEQ---NKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 110 LeqkekELE~LrEk~EELEeE~~rLk~eLde---eEqEaeeRisELEkqL~ELeKe~ 163 (615)
...+..+++.+.+.+.++..++..+..+++. ...+...++.+|+.++..|+...
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333332 22244445566777777766554
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.43 E-value=28 Score=31.41 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=35.4
Q ss_pred HHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 76 VEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 76 VeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
++.|...+..++.++-. +..|+-..+..|+..+.+++.|++.-+........++..|+.+++
T Consensus 17 Ie~Lkreie~lk~ele~--l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 17 IERLYREISGLKAQLEN--MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555 344555577777777777777777655444444445555554444
No 19
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=70.32 E-value=68 Score=29.63 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhHhHhHH-HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHH
Q 007155 69 VAELLRLVEELRERESLLKTEL-VEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQ 128 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Ef-le~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELE 128 (615)
+.++..-++.++.++.....++ +-++.+.|...++..|........+|+..++-.+..++
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 5666777788888877777777 66778888888888776666666666666655444443
No 20
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=68.56 E-value=19 Score=31.98 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 007155 97 KASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNK-REREKKMKEMEQEIEELKKAASER 166 (615)
Q Consensus 97 kEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeE-qEaeeRisELEkqL~ELeKe~~~~ 166 (615)
+-.|.-+.+|+.++.+.+.+|...+.++.+.+.....--.++++.- ..-..-...|+.++.+|+++...+
T Consensus 31 ~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777877777777777666655554443222222111 111112345666666666655443
No 21
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.31 E-value=59 Score=27.82 Aligned_cols=43 Identities=23% Similarity=0.103 Sum_probs=25.2
Q ss_pred HHhhhhhHHHHHHHhHHHHHHHHHhHHH-----HHHHHHHHHHHhhhh
Q 007155 99 SAAIVPVLESEIAAKNTELELSFKKIES-----LQCENERLKEMLEQN 141 (615)
Q Consensus 99 a~~kl~eLE~ELeqkekELE~LrEk~EE-----LEeE~~rLk~eLdee 141 (615)
++++|..||.+...++.+++.++..... .+.++..|+..++..
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 4567888877777777777766543211 244455555555533
No 22
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=64.21 E-value=15 Score=32.96 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCE 130 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE 130 (615)
-+.+|+.++...+.+|...+.++.+.+..
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655555444433
No 23
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=61.43 E-value=85 Score=27.60 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHhHhH
Q 007155 70 AELLRLVEELRERESLLKTE 89 (615)
Q Consensus 70 lElLRrVeeLeerls~Lr~E 89 (615)
.++||...+..++++-.+..
T Consensus 4 i~LLRK~aE~~KqL~~~~q~ 23 (107)
T 2no2_A 4 ADLLRKNAEVTKQVSMARQA 23 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 34555555555554444333
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.72 E-value=82 Score=27.18 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=10.9
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 007155 111 AAKNTELELSFKKIESLQCENERLKEML 138 (615)
Q Consensus 111 eqkekELE~LrEk~EELEeE~~rLk~eL 138 (615)
.+.+.++..+..++..++.++......|
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444333333
No 25
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.33 E-value=95 Score=33.17 Aligned_cols=17 Identities=24% Similarity=0.167 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHhh
Q 007155 123 KIESLQCENERLKEMLE 139 (615)
Q Consensus 123 k~EELEeE~~rLk~eLd 139 (615)
-.++|+....-|++.++
T Consensus 114 ~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 114 INEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 26
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=59.30 E-value=32 Score=29.01 Aligned_cols=68 Identities=13% Similarity=0.221 Sum_probs=34.9
Q ss_pred HhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHhhhhh
Q 007155 100 AAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNK-REREKKMKEMEQEIEELKKAASERS 167 (615)
Q Consensus 100 ~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeE-qEaeeRisELEkqL~ELeKe~~~~~ 167 (615)
|.-+.+|+.++...+.+|...+.++.+.+.....--.++++.- ..-..-...|+.++.+|+++....+
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777766666555444433222222110 1111113456666666666554433
No 27
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.27 E-value=1.6e+02 Score=31.07 Aligned_cols=19 Identities=0% Similarity=-0.045 Sum_probs=8.4
Q ss_pred hhhHHHHHHHhHHHHHHHH
Q 007155 103 VPVLESEIAAKNTELELSF 121 (615)
Q Consensus 103 l~eLE~ELeqkekELE~Lr 121 (615)
|.+++..+.+.+++...+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 406 LTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcc
Confidence 3344444444444444443
No 28
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.59 E-value=32 Score=26.77 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHh
Q 007155 72 LLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAK 113 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqk 113 (615)
+++.|+.|+.++++||+++.+-. .-+..||++..+.
T Consensus 8 L~~QVe~Lk~ENshLrrEL~dNS------~~lskLE~ets~m 43 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQELEDNS------NHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHhhH------HHHHHHHhhhhhH
Confidence 55668999999999999976522 3566666665553
No 29
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.48 E-value=1.3e+02 Score=28.33 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhHhHhHHHH
Q 007155 71 ELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 71 ElLRrVeeLeerls~Lr~Efle 92 (615)
....++..|++.+.+++.++..
T Consensus 10 ~Ain~qs~LeD~L~~~R~el~~ 31 (154)
T 2ocy_A 10 ESVDKQSHLEEQLNKSLKTIAS 31 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHH
Confidence 4556677788888888888743
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=56.05 E-value=85 Score=25.89 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKRERE 146 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEae 146 (615)
+++..++.++...+.... ..+.++..|.+++...+.+.+
T Consensus 20 ~~~~~~e~~l~~~e~~~~-------~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK-------QLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333 334444444444443333333
No 31
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=55.80 E-value=87 Score=25.94 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.4
Q ss_pred HHHHHH
Q 007155 147 KKMKEM 152 (615)
Q Consensus 147 eRisEL 152 (615)
.||.+|
T Consensus 53 ~KI~eL 58 (72)
T 3cve_A 53 GKIFEL 58 (72)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 344333
No 32
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=55.58 E-value=5.9 Score=41.05 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=40.0
Q ss_pred ChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHHH
Q 007155 412 DIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVET 465 (615)
Q Consensus 412 d~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLes 465 (615)
++++|..-|..+|+.....-....+++.+|.++. ...|++....+.+|...+.
T Consensus 30 ~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE-~~~l~~~~~~~~~L~~~Eq 82 (340)
T 1v9d_A 30 PYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ-LKMLSELKEEYDDLAESEQ 82 (340)
T ss_dssp CHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHH-HHHHHTCGGGGGGSCHHHH
T ss_pred CHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHH-HHHHHHhhCChhhcCHHHH
Confidence 6788888888888865455557899999998877 6778877666777755553
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.26 E-value=95 Score=41.65 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHH
Q 007155 95 LVKASAAIVPVLESEIAAKNTELELSFKKIES 126 (615)
Q Consensus 95 lekEa~~kl~eLE~ELeqkekELE~LrEk~EE 126 (615)
=++|+.+.|.+|..+|..++.+|+...+..++
T Consensus 1928 KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~ 1959 (3245)
T 3vkg_A 1928 KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ 1959 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777877777777776666655444433
No 34
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=52.61 E-value=1.2e+02 Score=26.76 Aligned_cols=14 Identities=21% Similarity=0.537 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 007155 150 KEMEQEIEELKKAA 163 (615)
Q Consensus 150 sELEkqL~ELeKe~ 163 (615)
.+||.++..|..+.
T Consensus 86 ~dLE~~iesL~eEl 99 (119)
T 3ol1_A 86 LDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 35
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.07 E-value=40 Score=28.03 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=10.9
Q ss_pred HHHhhhhhHHHHHHHhHHHHHH
Q 007155 98 ASAAIVPVLESEIAAKNTELEL 119 (615)
Q Consensus 98 Ea~~kl~eLE~ELeqkekELE~ 119 (615)
|.|--+.+|+..|..+..||..
T Consensus 16 ~~mgti~eLq~~L~~K~eELr~ 37 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKIEELRQ 37 (72)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH
Confidence 3445566666666555555543
No 36
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=51.80 E-value=1.2e+02 Score=26.15 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHHHHHHhHhHhHHHH
Q 007155 65 PVPDVAELLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 65 ~spevlElLRrVeeLeerls~Lr~Efle 92 (615)
|.-++-.+......+......+..++..
T Consensus 2 ~~~~~~~l~~eL~~l~~eE~~L~~eL~~ 29 (96)
T 3q8t_A 2 PGSDSEQLQRELKELALEEERLIQELED 29 (96)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555566666666666666655
No 37
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.59 E-value=1.2e+02 Score=26.19 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=7.4
Q ss_pred hhhhhHHHHHHHhHHHHH
Q 007155 101 AIVPVLESEIAAKNTELE 118 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE 118 (615)
+++-.++.++.+.+...+
T Consensus 23 drae~~e~~~k~~e~~~~ 40 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSK 40 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 38
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=51.42 E-value=92 Score=29.13 Aligned_cols=62 Identities=10% Similarity=0.199 Sum_probs=35.3
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHH---------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIES---------LQCENERLKEMLEQNKREREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EE---------LEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe 162 (615)
+.+..+|.++.+++.+...+-..... ...++..++..++.+..+..+++..|..++.++...
T Consensus 36 ~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 36 NGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555566666665555443222211 112334566777777777777777777777776654
No 39
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=51.00 E-value=35 Score=25.58 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=8.0
Q ss_pred HHhHHHHHHHHHHHHHH
Q 007155 121 FKKIESLQCENERLKEM 137 (615)
Q Consensus 121 rEk~EELEeE~~rLk~e 137 (615)
.+++..++.|+..|++.
T Consensus 23 EervstLq~EN~mLRqv 39 (42)
T 2oqq_A 23 EERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 34444445555544443
No 40
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.77 E-value=1e+02 Score=25.95 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 110 IAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 110 LeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+.+...|++.++...++|..--.+|...+.
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~ 49 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVT 49 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344456666666666666555554444444
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.36 E-value=1.7e+02 Score=27.54 Aligned_cols=14 Identities=36% Similarity=0.140 Sum_probs=5.0
Q ss_pred HHHHhHHHHHHHHH
Q 007155 109 EIAAKNTELELSFK 122 (615)
Q Consensus 109 ELeqkekELE~LrE 122 (615)
++..+++.++.++.
T Consensus 90 el~eK~K~~e~l~D 103 (152)
T 3a7p_A 90 VIALKNKNTERLNA 103 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 42
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.22 E-value=1.2e+02 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHhHhHHHH
Q 007155 72 LLRLVEELRERESLLKTELVE 92 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle 92 (615)
-+.+|..|++++..|..+...
T Consensus 21 yIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 21 LIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356678888887777666543
No 43
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.19 E-value=1e+02 Score=25.92 Aligned_cols=6 Identities=17% Similarity=0.241 Sum_probs=2.3
Q ss_pred HHHHHH
Q 007155 147 KKMKEM 152 (615)
Q Consensus 147 eRisEL 152 (615)
.||.+|
T Consensus 59 ~KI~eL 64 (79)
T 3cvf_A 59 VSLFEL 64 (79)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 44
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=48.73 E-value=1.3e+02 Score=25.79 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=8.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHH
Q 007155 113 KNTELELSFKKIESLQCENER 133 (615)
Q Consensus 113 kekELE~LrEk~EELEeE~~r 133 (615)
.+.++..+.+++..++.++..
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333344344444334444333
No 45
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.64 E-value=43 Score=35.69 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
++..|+.++..++.+++.+++.+++++.++..+.+++.+++ .....|-.++++|+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~rr~l~n~~~elk 58 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE----TVRRTLHNELQELR 58 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC
Confidence 45566667777777777677777777777766666665332 23344555555553
No 46
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=47.51 E-value=1.1e+02 Score=27.23 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHH
Q 007155 112 AKNTELELSFKKIESLQCENERLKEMLEQNKRERE 146 (615)
Q Consensus 112 qkekELE~LrEk~EELEeE~~rLk~eLdeeEqEae 146 (615)
+..+++..+...+...+..+..|+..+.....+..
T Consensus 42 ~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 42 DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555443333333
No 47
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.56 E-value=1.1e+02 Score=32.47 Aligned_cols=13 Identities=23% Similarity=0.061 Sum_probs=5.6
Q ss_pred HHHHHHhHhHhHH
Q 007155 78 ELRERESLLKTEL 90 (615)
Q Consensus 78 eLeerls~Lr~Ef 90 (615)
++++.+...++.+
T Consensus 371 ~le~~~~~~~~~~ 383 (487)
T 3oja_A 371 ALDEQVSNGRRAH 383 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 48
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.11 E-value=1e+02 Score=25.88 Aligned_cols=18 Identities=28% Similarity=0.135 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhHhHhHHH
Q 007155 74 RLVEELRERESLLKTELV 91 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efl 91 (615)
+.++.|-.++.+|...-.
T Consensus 9 kevEnLi~EN~eLl~TKN 26 (77)
T 2w83_C 9 REVENLILENTQLLETKN 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544433
No 49
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=44.39 E-value=1.5e+02 Score=25.35 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=8.6
Q ss_pred hhhhhHHHHHHHhHHHHHHH
Q 007155 101 AIVPVLESEIAAKNTELELS 120 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~L 120 (615)
+++-.++.++.+.+...+.+
T Consensus 23 d~ae~~e~~~k~~e~~~~~~ 42 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQL 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444433
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.25 E-value=1.1e+02 Score=23.88 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 007155 105 VLESEIAA 112 (615)
Q Consensus 105 eLE~ELeq 112 (615)
+||.+...
T Consensus 26 ~Le~~~~~ 33 (61)
T 1t2k_D 26 SLEKKAED 33 (61)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 51
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.06 E-value=3.2e+02 Score=29.91 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=9.3
Q ss_pred HhHHHHHHHHHHHHHHhh
Q 007155 122 KKIESLQCENERLKEMLE 139 (615)
Q Consensus 122 Ek~EELEeE~~rLk~eLd 139 (615)
+-.++|+....-|++.++
T Consensus 111 e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555555
No 52
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=42.85 E-value=1.5e+02 Score=26.55 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 72 LLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
+.+-++.|..++..+..+.+. +--.-...|..||.+|.....+........+.+..++..+
T Consensus 20 Lkreie~lk~ele~l~~E~q~--~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQR--VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334488888888888877765 4445556888888888887766555555555555555544
No 53
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=42.76 E-value=1.1e+02 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=13.8
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCEN 131 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~ 131 (615)
+|...+..+..|++.+...+..+...+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KL 33 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKL 33 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556655555555444443
No 54
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=42.33 E-value=17 Score=39.57 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=35.8
Q ss_pred ChhhhhhhhhhhHH-HHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHH
Q 007155 412 DIEDVVPFVKWLDD-ELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVE 464 (615)
Q Consensus 412 d~eeV~~fv~wvDe-eL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLe 464 (615)
++++|...|..+|+ .....-...+|++.+|.++. +..|++....+..|...+
T Consensus 111 ~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE-~~~l~~~~~d~~~L~~aE 163 (483)
T 2j1d_G 111 SNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSD-IDLLEEHKHELDRMAKAD 163 (483)
T ss_dssp CHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHH-HHHHHTTTTCGGGBCHHH
T ss_pred CHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHH-HHHHHHhccChhhcCHHH
Confidence 56788888888887 53344447899999998777 677777655555554443
No 55
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=42.29 E-value=1.9e+02 Score=25.81 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHhHhHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007155 75 LVEELRERESLLKTELVEHKLVKASAAIVP-VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKM 149 (615)
Q Consensus 75 rVeeLeerls~Lr~Efle~klekEa~~kl~-eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRi 149 (615)
+..+|...+.+|..+.-+ ||+.+.... +.-+.+..+.+|+..++...+.+...+..|...-+..++......
T Consensus 4 ~~rdL~~~~~~L~~E~e~---~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~ 76 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEA---LKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 345666666777666555 443222211 223344445555555555555555555444444444444333333
No 56
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=42.22 E-value=73 Score=26.81 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 007155 151 EMEQEIEELK 160 (615)
Q Consensus 151 ELEkqL~ELe 160 (615)
.|..+|.+|.
T Consensus 56 ~Ld~KI~eL~ 65 (79)
T 3cvf_A 56 LLDVSLFELS 65 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHhhHHHHHH
Confidence 4444444444
No 57
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.63 E-value=1.5e+02 Score=27.86 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhHhHH
Q 007155 70 AELLRLVEELRERESLLKTEL 90 (615)
Q Consensus 70 lElLRrVeeLeerls~Lr~Ef 90 (615)
++.|+..+.++.+++.+..+.
T Consensus 31 ~~rL~~Rd~~E~~~~~l~~e~ 51 (152)
T 3a7p_A 31 IRRLTDRNDKEAHLNELFQDN 51 (152)
T ss_dssp ---------------------
T ss_pred HHHHHHhhhHHHHHHHHHHhh
Confidence 333444444555554444443
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.19 E-value=1.3e+02 Score=23.69 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
.+.+|+.+...+..+-..++..+..|..++..|
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333333333333
No 59
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=41.14 E-value=59 Score=39.14 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=3.9
Q ss_pred HHHHHHHHhH
Q 007155 76 VEELRERESL 85 (615)
Q Consensus 76 VeeLeerls~ 85 (615)
+++++.++..
T Consensus 866 L~el~~~L~~ 875 (1184)
T 1i84_S 866 LQRTKERQQK 875 (1184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 60
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.00 E-value=2.6e+02 Score=27.21 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=31.7
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIE 157 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ 157 (615)
.|+.+..+...++|.|-...+++|.++ -.++-...+|...||.+|+.++.
T Consensus 150 ~l~~~~~~l~~qlE~~v~~K~~~E~~L---~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 150 RLLRDWNDVQGRFEKAVSAKEALETDL---YKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666666777777766666666554 33344456688888888884443
No 61
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=40.65 E-value=1.6e+02 Score=39.54 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=11.0
Q ss_pred CCcchhhHhHHHHHHh
Q 007155 364 LPATSNARDMIGEIEN 379 (615)
Q Consensus 364 ~~~k~~~~DL~~ELen 379 (615)
+|+=.++.+||..|++
T Consensus 2357 ~GniLdd~~LI~~L~~ 2372 (3245)
T 3vkg_A 2357 SGNILDDDSVISTLET 2372 (3245)
T ss_dssp SSCGGGCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHH
Confidence 4566777788877754
No 62
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.04 E-value=2.1e+02 Score=25.81 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 007155 124 IESLQCENERLKEMLE 139 (615)
Q Consensus 124 ~EELEeE~~rLk~eLd 139 (615)
+++++.++..|+.+|+
T Consensus 73 vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555555
No 63
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=38.70 E-value=27 Score=37.17 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=32.9
Q ss_pred ChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcc
Q 007155 412 DIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGY 457 (615)
Q Consensus 412 d~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y 457 (615)
++++|...|..+|+.....-....+++.+|.++. ...|++....+
T Consensus 105 ~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE-~~~l~~~~~~~ 149 (402)
T 4eah_A 105 SAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAE-VKLLRQYERER 149 (402)
T ss_dssp CHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHH-HHHHHHHHHSS
T ss_pred CHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHH-HHHHHHhhccC
Confidence 5677777788888664444456789999998777 77888876554
No 64
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.17 E-value=66 Score=25.25 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=13.4
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
.+.+||.+...++.+-+.|...+..|..++..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444344433333
No 65
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=37.04 E-value=2.3e+02 Score=25.27 Aligned_cols=31 Identities=29% Similarity=0.239 Sum_probs=21.0
Q ss_pred HHHHHHhhhhhH-HHHHHHhHHHHHHHHHhHHHH
Q 007155 95 LVKASAAIVPVL-ESEIAAKNTELELSFKKIESL 127 (615)
Q Consensus 95 lekEa~~kl~eL-E~ELeqkekELE~LrEk~EEL 127 (615)
+|+-|+. +.+ +.+|+.+..||..|..+++.+
T Consensus 12 LW~lA~~--~NFT~~ELeSlK~EL~HfE~rl~K~ 43 (109)
T 2fcw_A 12 LWDLAQS--ANLTDKELEAFREELKHFEAKIEKH 43 (109)
T ss_dssp HHHHHHT--SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6765543 555 777777888888777666554
No 66
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=36.53 E-value=2.3e+02 Score=25.21 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=4.4
Q ss_pred HHHHHHHHHHhh
Q 007155 128 QCENERLKEMLE 139 (615)
Q Consensus 128 EeE~~rLk~eLd 139 (615)
+..+..+..+++
T Consensus 82 e~~l~el~~rle 93 (129)
T 2fxo_A 82 EAKVKEMNKRLE 93 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 67
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.20 E-value=2.1e+02 Score=25.08 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=24.4
Q ss_pred HHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 121 FKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 121 rEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
.+.++.+++++.+++.. ..+...++.+|+.++..|..+..
T Consensus 43 E~~~s~le~e~~rlr~~----~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLE----SKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----hccchhhHHHHHHHHHHHHHHHH
Confidence 34555666666655544 23445677777777777776654
No 68
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.62 E-value=1.7e+02 Score=24.32 Aligned_cols=52 Identities=29% Similarity=0.255 Sum_probs=28.9
Q ss_pred HHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 82 RESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 82 rls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.+..|+.++-+ || ..+..|+..+.-+++..|.+...+-.+.-++.-|..++.
T Consensus 19 ~l~~Lr~eL~~----Ke--~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~ 70 (75)
T 3a7o_A 19 TLAILQKELKS----KE--QEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----HH--HHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHH
Confidence 44555555444 11 245566666666666666666655555555555555554
No 69
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=35.14 E-value=1.4e+02 Score=27.75 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=11.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 007155 135 KEMLEQNKREREKKMKEMEQEIEELKK 161 (615)
Q Consensus 135 k~eLdeeEqEaeeRisELEkqL~ELeK 161 (615)
..++++...+..+.+.+.|..+..++.
T Consensus 98 e~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 98 QKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 70
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.80 E-value=1.9e+02 Score=26.11 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=4.2
Q ss_pred HHHHhHHHHHH
Q 007155 109 EIAAKNTELEL 119 (615)
Q Consensus 109 ELeqkekELE~ 119 (615)
++..+.++++.
T Consensus 65 dli~k~kqIe~ 75 (132)
T 1ykh_B 65 DIILKTRQINK 75 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 71
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.72 E-value=1.5e+02 Score=24.73 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 127 LQCENERLKEMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 127 LEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
|+..+.+|-.+.........+|+..||.++..+.
T Consensus 19 LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 19 LQTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3334444444444444455577777887776644
No 72
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=33.51 E-value=1.7e+02 Score=24.32 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=27.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHh
Q 007155 116 ELELSFKKIESLQCENERLKEMLEQNKREREKK---MKEMEQEIEELKKAA 163 (615)
Q Consensus 116 ELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeR---isELEkqL~ELeKe~ 163 (615)
++..+...+..++.++..++..+....++.... ...|+.+|....+..
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445555666666666666666444444333 246777777766654
No 73
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.42 E-value=2.3e+02 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.057 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 95 LVKASAAIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 95 lekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+-+--+....+||.+..++..+++.++++...+..+...++.+++
T Consensus 42 CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 42 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455566666666666666665555555555544444443
No 74
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.40 E-value=86 Score=24.86 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=11.1
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
+|+.++.++..+-..|+..+..++.++..|
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 75
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.96 E-value=3.1e+02 Score=30.56 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=9.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q 007155 136 EMLEQNKREREKKMKEMEQEIEE 158 (615)
Q Consensus 136 ~eLdeeEqEaeeRisELEkqL~E 158 (615)
..|+++......++..|+.-|..
T Consensus 120 qyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 120 EVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445444444433
No 76
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.01 E-value=94 Score=26.91 Aligned_cols=55 Identities=7% Similarity=0.143 Sum_probs=38.0
Q ss_pred HhHhHhHHHHHHHHHHH--H--hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 83 ESLLKTELVEHKLVKAS--A--AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 83 ls~Lr~Efle~klekEa--~--~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
+..+|.+|.. +..|+ . ..-.++|..+.+-..|+..++..+.+|+....+++...+
T Consensus 16 LD~ir~Efe~--~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YE 74 (92)
T 3vp9_A 16 LDAIRQEFLQ--VSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYE 74 (92)
T ss_dssp -CCTTTTTTT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677754 22332 1 122378889999999999999999999888877776655
No 77
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.76 E-value=2.4e+02 Score=23.91 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007155 144 EREKKMKEMEQEIEELK 160 (615)
Q Consensus 144 EaeeRisELEkqL~ELe 160 (615)
+++.+..+|..++..|+
T Consensus 49 eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444333333
No 78
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.63 E-value=1.5e+02 Score=28.11 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHhHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELS 120 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~L 120 (615)
....|-.++.++..|+..+
T Consensus 86 ~~~~Lr~ql~akr~EL~aL 104 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNAL 104 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555543
No 79
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.03 E-value=1.4e+02 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.327 Sum_probs=10.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 007155 132 ERLKEMLEQNKREREKKMKEMEQE 155 (615)
Q Consensus 132 ~rLk~eLdeeEqEaeeRisELEkq 155 (615)
.+|-.+.........+|+..||.+
T Consensus 22 ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 22 ARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333333344555555543
No 80
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.60 E-value=1.7e+02 Score=25.57 Aligned_cols=22 Identities=36% Similarity=0.286 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHhHhHH
Q 007155 69 VAELLRLVEELRERESLLKTEL 90 (615)
Q Consensus 69 vlElLRrVeeLeerls~Lr~Ef 90 (615)
+..+.+.++.|+....+|+.+.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445888888888887776
No 81
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.88 E-value=5.8e+02 Score=27.83 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=9.9
Q ss_pred HhHHHHHHhhhhhhhhh
Q 007155 371 RDMIGEIENRSAHLLAI 387 (615)
Q Consensus 371 ~DL~~ELenrSs~l~ai 387 (615)
.+-|..|++.-.|.+.|
T Consensus 300 le~ih~LT~~~~~eL~I 316 (464)
T 1m1j_B 300 NDKISQLTKIGPTKVLI 316 (464)
T ss_dssp HHHHHHHHTTSCEEEEE
T ss_pred ccceeeccCCCCEEEEE
Confidence 46677777754554333
No 82
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=29.59 E-value=2.6e+02 Score=24.23 Aligned_cols=10 Identities=20% Similarity=0.807 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 007155 152 MEQEIEELKK 161 (615)
Q Consensus 152 LEkqL~ELeK 161 (615)
|..++..|.+
T Consensus 73 L~~ql~~lq~ 82 (94)
T 3jsv_C 73 LQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 83
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.08 E-value=1.2e+02 Score=25.64 Aligned_cols=10 Identities=20% Similarity=0.714 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 007155 150 KEMEQEIEEL 159 (615)
Q Consensus 150 sELEkqL~EL 159 (615)
..|..++.+|
T Consensus 76 ~~L~~rl~~L 85 (88)
T 1nkp_A 76 EQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 84
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.99 E-value=84 Score=26.08 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.1
Q ss_pred HHHHHhhhhhH
Q 007155 96 VKASAAIVPVL 106 (615)
Q Consensus 96 ekEa~~kl~eL 106 (615)
++.+++-|..|
T Consensus 42 L~kA~~yI~~L 52 (80)
T 1nlw_A 42 LTKAKLHIKKL 52 (80)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.65 E-value=1.3e+02 Score=24.90 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=10.5
Q ss_pred hhhhHHHHHHHhHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFK 122 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrE 122 (615)
++.+||.+|..++.++..|+.
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444333
No 86
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.48 E-value=2.4e+02 Score=23.06 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE 139 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd 139 (615)
.+.+.+....+.+.++..+..++..++.++.+...++.
T Consensus 28 ~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 28 DKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555544444443
No 87
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=28.12 E-value=3.5e+02 Score=24.73 Aligned_cols=15 Identities=7% Similarity=0.085 Sum_probs=6.4
Q ss_pred HHHHHHHHhHhHhHH
Q 007155 76 VEELRERESLLKTEL 90 (615)
Q Consensus 76 VeeLeerls~Lr~Ef 90 (615)
++.+...+..+...+
T Consensus 22 ~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 22 ADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 88
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.45 E-value=2.5e+02 Score=23.30 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHHHH
Q 007155 108 SEIAAKNTELELSF 121 (615)
Q Consensus 108 ~ELeqkekELE~Lr 121 (615)
.+|..++.++..+.
T Consensus 29 ~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 29 QLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 89
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.85 E-value=3.4e+02 Score=24.17 Aligned_cols=13 Identities=15% Similarity=0.583 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 007155 150 KEMEQEIEELKKA 162 (615)
Q Consensus 150 sELEkqL~ELeKe 162 (615)
.+|+.++..|.++
T Consensus 93 e~L~~ql~~Lq~q 105 (110)
T 2v4h_A 93 EYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 90
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.54 E-value=79 Score=25.88 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=19.1
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHH
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQ 128 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELE 128 (615)
+++.+||.+|..+..++..+++++..++
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788887777777776666554443
No 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.44 E-value=1.4e+02 Score=31.93 Aligned_cols=51 Identities=25% Similarity=0.265 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 007155 106 LESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELK 160 (615)
Q Consensus 106 LE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELe 160 (615)
|+.++..+..+++.+++..+++..++..+.+++.+ .+.....|..++++|.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~----~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ----SNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC
Confidence 34444444444444444444444444444444432 2223334555555553
No 92
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.22 E-value=97 Score=28.55 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 007155 151 EMEQEIEELKKA 162 (615)
Q Consensus 151 ELEkqL~ELeKe 162 (615)
.+|.+...|..+
T Consensus 100 ~~e~r~~~L~~q 111 (135)
T 2e7s_A 100 AIEILNKRLTEQ 111 (135)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 93
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.03 E-value=90 Score=23.22 Aligned_cols=9 Identities=56% Similarity=0.608 Sum_probs=3.5
Q ss_pred hHHHHHHHh
Q 007155 105 VLESEIAAK 113 (615)
Q Consensus 105 eLE~ELeqk 113 (615)
.||.++..+
T Consensus 24 aleselqal 32 (48)
T 1g6u_A 24 ALESELQAL 32 (48)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334443333
No 94
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=25.96 E-value=1.2e+02 Score=25.40 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 007155 76 VEELRER 82 (615)
Q Consensus 76 VeeLeer 82 (615)
++.|..+
T Consensus 24 le~le~~ 30 (89)
T 2lw1_A 24 LEQLPQL 30 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.87 E-value=1.1e+02 Score=25.09 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHhHHHHH
Q 007155 102 IVPVLESEIAAKNTELE 118 (615)
Q Consensus 102 kl~eLE~ELeqkekELE 118 (615)
.+.+||.++.+++...+
T Consensus 30 ~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 30 HLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555444333
No 96
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.86 E-value=5.5e+02 Score=27.43 Aligned_cols=11 Identities=36% Similarity=0.471 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 007155 146 EKKMKEMEQEI 156 (615)
Q Consensus 146 eeRisELEkqL 156 (615)
..+|+.||..|
T Consensus 147 ~~kiqRLE~~I 157 (390)
T 1deq_A 147 LVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHH
Confidence 33444555555
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.85 E-value=3e+02 Score=23.24 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=7.7
Q ss_pred chHHHHHHHHHHHHHHHhH
Q 007155 67 PDVAELLRLVEELRERESL 85 (615)
Q Consensus 67 pevlElLRrVeeLeerls~ 85 (615)
++.-+++..+..++.++..
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~ 24 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQL 24 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 98
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.70 E-value=1.2e+02 Score=25.45 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHh
Q 007155 115 TELELSFKKIESLQCENERLKEMLEQNKREREKK---MKEMEQEIEELKKAA 163 (615)
Q Consensus 115 kELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeR---isELEkqL~ELeKe~ 163 (615)
.+++.+...+..++.++..++..+....++.... ...|+.+|....+..
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3555566666677777777777776554444433 246777777776654
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.68 E-value=1e+02 Score=23.88 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 007155 115 TELELSFKKIESLQCENERLKEM 137 (615)
Q Consensus 115 kELE~LrEk~EELEeE~~rLk~e 137 (615)
.|.+.++.+++.|..++..++.+
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333
No 100
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=25.52 E-value=3.2e+02 Score=28.91 Aligned_cols=142 Identities=19% Similarity=0.181 Sum_probs=73.0
Q ss_pred cchhhHhHHHHHHhhhhhhhhhhcccccchhhHHHHHHHHhhccccC---hhhhhhhhhhhHHH-HhHHH--hHHHHHhc
Q 007155 366 ATSNARDMIGEIENRSAHLLAIKTDVETQGDFIRYLIKEVESAAFTD---IEDVVPFVKWLDDE-LSYLV--DERAVLKH 439 (615)
Q Consensus 366 ~k~~~~DL~~ELenrSs~l~aiK~DVEd~~k~IkkL~kELrvld~kd---~eeV~~fv~wvDee-L~~l~--de~~VLK~ 439 (615)
+..+..++|..+..-++.+.+.|. .+.|+.++.-+...+... ++=.+.++.|...+ +..|- -|.-
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~kak~-----~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~k---- 104 (394)
T 3txn_A 34 KAKELADLIKVTRPFLSSISKAKA-----AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEAR---- 104 (394)
T ss_dssp CHHHHHHHHHHTTTGGGGSCHHHH-----HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHhchHHH-----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 355566666666665555555554 456666666665543221 23346778888876 22221 1222
Q ss_pred CCCchHHHHHHHHHHhcccch----hhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhh-hhhccC
Q 007155 440 FDWPEQKADALREAAFGYFDL----KKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATK-RYRGFQ 514 (615)
Q Consensus 440 Fp~PekkldaLreaa~~Y~dL----~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~-~~~~~~ 514 (615)
+-.|.-..-.|.+. ..+..+++.. || ...|=.|..+--++-..+.++-+.|..-.+ +--...
T Consensus 105 -------L~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd-----~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 105 -------LIALYFDTALYTEALALGAQLLRELKKL-DD-----KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp -------HHHHHHHTTCHHHHHHHHHHHHHHHTTS-SC-----THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhhhHHHHHHHHHHHHHHHhcc-cc-----chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 22333333344443 3334444443 23 234444555555555556666666654333 112234
Q ss_pred CCchhhhhhhhHHHHHHHH
Q 007155 515 IPMDWMLETGIVSQIKLAS 533 (615)
Q Consensus 515 ip~~wm~d~gi~~~ik~~s 533 (615)
|+.+| -|.++|++++
T Consensus 172 i~~~p----~i~a~i~~~~ 186 (394)
T 3txn_A 172 IYCPP----KVQGALDLQS 186 (394)
T ss_dssp SCCCH----HHHHHHHHHH
T ss_pred CCCCH----HHHHHHHHHh
Confidence 66677 6777788776
No 101
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.47 E-value=2.6e+02 Score=22.36 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=4.1
Q ss_pred CchHHHHHHH
Q 007155 66 VPDVAELLRL 75 (615)
Q Consensus 66 spevlElLRr 75 (615)
+++-...++.
T Consensus 4 ~~DL~~il~e 13 (77)
T 3trt_A 4 KPDCTAAMRD 13 (77)
T ss_dssp CCCCHHHHHH
T ss_pred cccHHHHHHH
Confidence 3444444433
No 102
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.45 E-value=1.9e+02 Score=25.51 Aligned_cols=8 Identities=38% Similarity=0.891 Sum_probs=0.0
Q ss_pred ccccCCCC
Q 007155 49 SFGVYFPR 56 (615)
Q Consensus 49 ~~g~~~pr 56 (615)
.||.|+.+
T Consensus 1 ~~~g~l~~ 8 (106)
T 1j1d_B 1 HFGGYIQK 8 (106)
T ss_dssp --------
T ss_pred Ccchhhhh
Confidence 47888855
No 103
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=25.40 E-value=4.7e+02 Score=25.80 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAA 163 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~ 163 (615)
+|...|.++.+.+.+++.-++++...+..+..+.-++- .++.++..|+.+++.|+...
T Consensus 78 iL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit----~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 78 ELADHEARIKQLRIDVDDHESRITANTKAITALNVRVT----TAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred eeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheee----cccccchhhhhhhhhhcccc
Confidence 45566777777777776655555555555555554443 44555556666666555444
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=24.09 E-value=2.9e+02 Score=30.22 Aligned_cols=63 Identities=21% Similarity=0.104 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENERLKE------MLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~------eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
.+-+|+.+..+...+++.++.+.+.+..++..++. .+.++-.+...++.+||.++.+++.+..
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555444444444433322 1112223444445555555555555543
No 105
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=24.09 E-value=3e+02 Score=22.61 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhh
Q 007155 150 KEMEQEIEELKKAAS 164 (615)
Q Consensus 150 sELEkqL~ELeKe~~ 164 (615)
..|+.+|....+..+
T Consensus 43 l~Le~EIatYRkLLE 57 (74)
T 2xv5_A 43 LALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 467788887776654
No 106
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.04 E-value=3.6e+02 Score=29.05 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKE------MLEQNKREREKKMKEMEQEIEELKKAASE 165 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~------eLdeeEqEaeeRisELEkqL~ELeKe~~~ 165 (615)
+.+-+|+.+-.+...+++.++.+.+.+..++..++. .+.++-++...++.+||.++.+++.+...
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666665555555555544321 12222334444455555555555555433
No 107
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.83 E-value=3.4e+02 Score=29.77 Aligned_cols=32 Identities=6% Similarity=-0.086 Sum_probs=17.2
Q ss_pred hhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 102 IVPVLESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 102 kl~eLE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
.+-+|+.+..+...+++.++.+.+.+..++..
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566555555555555544
No 108
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.69 E-value=7.4e+02 Score=26.99 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=4.9
Q ss_pred HHHHHhHhHhHH
Q 007155 79 LRERESLLKTEL 90 (615)
Q Consensus 79 Leerls~Lr~Ef 90 (615)
.+..+..|+..+
T Consensus 98 V~~~LqeLe~~l 109 (464)
T 1m1j_B 98 VKPVLRDLKDRV 109 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHhHHHHHHHHH
Confidence 333444444444
No 109
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.49 E-value=4.3e+02 Score=24.24 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHH
Q 007155 101 AIVPVLESEIAAKNTELELSFKKIESLQCENERLKEMLE---QNKREREKKMKEMEQEIEE 158 (615)
Q Consensus 101 ~kl~eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLd---eeEqEaeeRisELEkqL~E 158 (615)
+++..||.+|.......+....++++....+.-+...|+ +.-..++.++.+|+..+..
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~ 112 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKT 112 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677666555555444555554444444444443 1223344445555555443
No 110
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.95 E-value=3.2e+02 Score=22.53 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=7.1
Q ss_pred hHHHHHHHHHhHHHHHHHH
Q 007155 113 KNTELELSFKKIESLQCEN 131 (615)
Q Consensus 113 kekELE~LrEk~EELEeE~ 131 (615)
+..|.+.+.+++...+++.
T Consensus 9 l~~E~eel~~klk~~~ee~ 27 (71)
T 1uix_A 9 LANEKEELNNKLKEAQEQL 27 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 111
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.41 E-value=87 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhc
Q 007155 478 CGLAFKKMQALLEKLEHGVYNLSRM 502 (615)
Q Consensus 478 ~~~aLkKm~~~l~K~e~~v~~l~r~ 502 (615)
+++-|+++....+++..++++|+.|
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777654
No 112
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=22.40 E-value=4.7e+02 Score=24.22 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHhHhHHH
Q 007155 72 LLRLVEELRERESLLKTELV 91 (615)
Q Consensus 72 lLRrVeeLeerls~Lr~Efl 91 (615)
++.+|+.|+.-..-||....
T Consensus 26 LvtkVDDLQD~VE~LRkDV~ 45 (141)
T 3okq_A 26 LLSKVDDLQDVIEIMRKDVA 45 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 56667777766666655543
No 113
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.08 E-value=3.5e+02 Score=22.67 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 007155 106 LESEIAAKNTELELSFKKIESLQCENERL 134 (615)
Q Consensus 106 LE~ELeqkekELE~LrEk~EELEeE~~rL 134 (615)
|-++|.++..|+..++-.+|++..++..+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 114
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.81 E-value=73 Score=32.80 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 007155 116 ELELSFKKIESLQCENERLKEMLEQNKREREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 116 ELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisELEkqL~ELeKe~~ 164 (615)
+++.+.++.+.+++++.+|.++.+.......++..+|++.+.-.++..+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LG 234 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLG 234 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcc
Confidence 4555555555555555555544443333334444455555555544444
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.62 E-value=1.8e+02 Score=25.51 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=16.3
Q ss_pred hHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 007155 105 VLESEIAAKNTELELSFKKIESLQCENER 133 (615)
Q Consensus 105 eLE~ELeqkekELE~LrEk~EELEeE~~r 133 (615)
.|..++..++.|.+.|++..+.|+-++..
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666555544
No 116
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=21.56 E-value=40 Score=32.78 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHHHHH
Q 007155 77 EELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESLQCE 130 (615)
Q Consensus 77 eeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EELEeE 130 (615)
++++.+ .++|.+|...++. +.+.++..++ -.++..|++.|++..++.++|
T Consensus 183 ~dl~~R-~~lR~ef~~~Gl~-~il~~l~~~~--~~~L~~Qi~~fe~~~~eD~~e 232 (233)
T 2f31_A 183 EELDFR-VHIRSELMRLGLH-QVLQELREIE--NEDMKVQLCVFDEQGDEDFFD 232 (233)
T ss_dssp CCHHHH-HHHHHHHHHTTHH-HHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHHCChH-HHHHHHhccC--CHHHHHHHHHHHHHHHhCHhh
Confidence 456777 7899999888864 4444444443 345667788777766555443
No 117
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.49 E-value=1.9e+02 Score=21.60 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007155 141 NKREREKKMKEMEQEIEELKKA 162 (615)
Q Consensus 141 eEqEaeeRisELEkqL~ELeKe 162 (615)
...+.+.|+..||.++..|...
T Consensus 17 r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 17 RSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666544
No 118
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.20 E-value=3.8e+02 Score=22.68 Aligned_cols=16 Identities=13% Similarity=0.472 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 007155 149 MKEMEQEIEELKKAAS 164 (615)
Q Consensus 149 isELEkqL~ELeKe~~ 164 (615)
+..|++++.+|...+.
T Consensus 61 ~~~l~~~~eelq~~~~ 76 (81)
T 1wt6_A 61 VRQLQERMELLQAEGA 76 (81)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHccch
Confidence 3345555555544443
No 119
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.66 E-value=3.3e+02 Score=21.83 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=9.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 007155 114 NTELELSFKKIESLQCENERL 134 (615)
Q Consensus 114 ekELE~LrEk~EELEeE~~rL 134 (615)
..|+..+.+.+..++.++..|
T Consensus 40 s~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 40 SDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhh
Confidence 334444444444444444443
No 120
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.44 E-value=5.8e+02 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=5.1
Q ss_pred HHHHHHhHhHhH
Q 007155 78 ELRERESLLKTE 89 (615)
Q Consensus 78 eLeerls~Lr~E 89 (615)
.++.++.++..+
T Consensus 136 ~~~~~~~~L~~e 147 (213)
T 1ik9_A 136 ENQAKNEHLQKE 147 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 121
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.34 E-value=4.6e+02 Score=23.33 Aligned_cols=14 Identities=7% Similarity=0.413 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHh
Q 007155 150 KEMEQEIEELKKAA 163 (615)
Q Consensus 150 sELEkqL~ELeKe~ 163 (615)
.+...++..|....
T Consensus 73 ~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 73 RDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555554443
No 122
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.14 E-value=1.5e+02 Score=22.26 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 007155 148 KMKEMEQEIEELK 160 (615)
Q Consensus 148 RisELEkqL~ELe 160 (615)
+..+||.++..|+
T Consensus 18 ~naeLEervstLq 30 (42)
T 2oqq_A 18 KNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444443333
No 123
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.08 E-value=5.4e+02 Score=24.01 Aligned_cols=84 Identities=25% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhHhHHHHHHHHHHHHhhhh-hHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007155 74 RLVEELRERESLLKTELVEHKLVKASAAIVP-VLESEIAAKNTELELSFKKIESLQCENERLKEMLEQNKREREKKMKEM 152 (615)
Q Consensus 74 RrVeeLeerls~Lr~Efle~klekEa~~kl~-eLE~ELeqkekELE~LrEk~EELEeE~~rLk~eLdeeEqEaeeRisEL 152 (615)
.+.+.+..++..|...+-+.-.--+..++-- .||.++.+++.++...++.+..+..++...-..|. ......-+|
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~----~~~~~~~~~ 145 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVE----ELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccchHHH
Q ss_pred HHHHHHHHH
Q 007155 153 EQEIEELKK 161 (615)
Q Consensus 153 EkqL~ELeK 161 (615)
+..+..|.+
T Consensus 146 ~~~~~~~~~ 154 (155)
T 2efr_A 146 ENEVARLKK 154 (155)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
No 124
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=20.07 E-value=3.6e+02 Score=22.05 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=8.8
Q ss_pred hhhHHHHHHHhHHHHHHHHH
Q 007155 103 VPVLESEIAAKNTELELSFK 122 (615)
Q Consensus 103 l~eLE~ELeqkekELE~LrE 122 (615)
...|+.++......++.+.+
T Consensus 45 h~~l~~ei~~~~~~v~~v~~ 64 (118)
T 3uul_A 45 HETFMMELSAHQSSVGSVLQ 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
Done!