Query 007155
Match_columns 615
No_of_seqs 421 out of 536
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 18:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007155.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007155hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9da_ a.207.1.1 (A:) Diaphan 50.7 3.7 0.00027 39.8 2.9 54 412-466 25-78 (332)
2 d1q08a_ a.6.1.3 (A:) Transcrip 43.5 20 0.0014 28.4 5.9 61 446-506 5-65 (94)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 35.6 77 0.0056 26.6 8.8 7 112-118 67-73 (129)
4 d1szia_ a.24.23.1 (A:) Mannose 34.1 1.5E+02 0.011 27.1 11.3 140 367-520 61-216 (226)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 32.3 1.1E+02 0.0081 24.1 10.0 8 105-112 26-33 (107)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 31.0 91 0.0066 22.7 7.6 16 146-161 45-60 (66)
7 d1gqea_ e.38.1.1 (A:) Polypept 29.9 1.7E+02 0.013 28.2 11.7 17 73-89 5-21 (362)
8 d1ou5a1 a.173.1.1 (A:151-354) 26.6 11 0.00083 33.7 1.8 31 560-590 18-48 (204)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 25.8 1.5E+02 0.011 23.4 9.5 12 81-92 22-33 (107)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 24.7 67 0.0048 24.1 5.9 22 95-116 41-62 (79)
11 d1qvra2 c.37.1.20 (A:149-535) 24.2 1.3E+02 0.0092 29.3 9.4 96 62-162 248-362 (387)
12 d1seta1 a.2.7.1 (A:1-110) Sery 22.8 1.7E+02 0.012 23.0 8.9 21 144-164 75-95 (110)
No 1
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.72 E-value=3.7 Score=39.76 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=40.1
Q ss_pred ChhhhhhhhhhhHHHHhHHHhHHHHHhcCCCchHHHHHHHHHHhcccchhhHHHh
Q 007155 412 DIEDVVPFVKWLDDELSYLVDERAVLKHFDWPEQKADALREAAFGYFDLKKVETE 466 (615)
Q Consensus 412 d~eeV~~fv~wvDeeL~~l~de~~VLK~Fp~PekkldaLreaa~~Y~dL~eLese 466 (615)
+.++|...|..+|+.....-..+.+++.+|.++. .+.|++.......|...+.=
T Consensus 25 ~~~~i~~ai~~~D~~~l~~e~l~~L~~~~Pt~eE-~~~l~~~~~~~~~L~~~E~f 78 (332)
T d1v9da_ 25 PYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQ-LKMLSELKEEYDDLAESEQF 78 (332)
T ss_dssp CHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHH-HHHHHTCGGGGGGSCHHHHH
T ss_pred CHHHHHHHHHhCCcccCCHHHHHHHHHhCcCHHH-HHHHHHhcCChhhcChHHHH
Confidence 6788888888888876565667899999998777 77787766556666555533
No 2
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=43.50 E-value=20 Score=28.45 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHH
Q 007155 446 KADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESA 506 (615)
Q Consensus 446 kldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~ 506 (615)
.+..|+.+....-.|.++..=|.-|.+....+|.....-+..-+..|+..|..|.++|+.-
T Consensus 5 RL~fI~~ar~lGFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI~~L~~l~~~L 65 (94)
T d1q08a_ 5 RLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSL 65 (94)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777888887777766543346898877777888888899998888877743
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.65 E-value=77 Score=26.56 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=2.6
Q ss_pred HhHHHHH
Q 007155 112 AKNTELE 118 (615)
Q Consensus 112 qkekELE 118 (615)
.+.++++
T Consensus 67 ~kakqId 73 (129)
T d1ykhb1 67 LKTRQIN 73 (129)
T ss_dssp HHHHHHH
T ss_pred HHHhhHH
Confidence 3333333
No 4
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.13 E-value=1.5e+02 Score=27.13 Aligned_cols=140 Identities=15% Similarity=0.241 Sum_probs=75.6
Q ss_pred chhhHhHHHHHHhhhhhhhhhhccccc-----chh----hHHHHHHHHhhccc--cChhhh----hhhhhhhHHHHhHHH
Q 007155 367 TSNARDMIGEIENRSAHLLAIKTDVET-----QGD----FIRYLIKEVESAAF--TDIEDV----VPFVKWLDDELSYLV 431 (615)
Q Consensus 367 k~~~~DL~~ELenrSs~l~aiK~DVEd-----~~k----~IkkL~kELrvld~--kd~eeV----~~fv~wvDeeL~~l~ 431 (615)
+.-..+.|..|..+......+|+.+.. ..+ ...|..+.....+. ...+.| +....-+=..|.+.+
T Consensus 61 k~~~qEaLsqL~~tl~Lie~ak~~v~~~l~~~qekL~q~W~~W~~~~~~~~~~~~~~~e~vEsrtL~~ar~LtqQLqstc 140 (226)
T d1szia_ 61 RQKAQETLQQLTSVLGLMESVKQGVDQRLGEGQEKLHQMWLSWNQKTPQDAEKDPAKPEQVEARALSMFRDITQQLQSMC 140 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHhhhccCCccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777777666665556665532 111 12333332222110 011222 333344444555544
Q ss_pred hHHHHHhcC-CCchHHHHHHHHHHhcccchhhHHHhhccccCCCCCchHHHHHHHHHHHHHHHhhhhhhhhchHHHhhhh
Q 007155 432 DERAVLKHF-DWPEQKADALREAAFGYFDLKKVETEASSFHDDARQPCGLAFKKMQALLEKLEHGVYNLSRMRESATKRY 510 (615)
Q Consensus 432 de~~VLK~F-p~PekkldaLreaa~~Y~dL~eLeseLssfkddp~~P~~~aLkKm~~~l~K~e~~v~~l~r~r~~~~~~~ 510 (615)
..|+-.. .-|..+-+.+..+...-.+|-.......+|.|-+ ...|..-..=+.|+..+++.|. .|
T Consensus 141 --~~L~ssiqGLP~~iQdq~~~~r~~~~~L~~~f~~a~Sf~dLs----~~~L~~sr~ql~~~~~~ld~ll--------dy 206 (226)
T d1szia_ 141 --VALGASIQGLPSHVREQAQQARSQVNDLQATFSGIHSFQDLS----AGVLAQTRERIARAREALDNTV--------EY 206 (226)
T ss_dssp --HHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHGGGCCSGGGCC----HHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred --HHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcccHhhcC----HHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 2333333 3556666666666666667777778889999875 4556666677788888888664 79
Q ss_pred hccCCCchhh
Q 007155 511 RGFQIPMDWM 520 (615)
Q Consensus 511 ~~~~ip~~wm 520 (615)
-..|.|..|+
T Consensus 207 l~~ntPL~WL 216 (226)
T d1szia_ 207 VAQNTPAMWL 216 (226)
T ss_dssp HHTCCCTTCE
T ss_pred HhcCCCcccc
Confidence 9999999995
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.30 E-value=1.1e+02 Score=24.11 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 007155 105 VLESEIAA 112 (615)
Q Consensus 105 eLE~ELeq 112 (615)
.|+.++..
T Consensus 26 ~le~q~~E 33 (107)
T d1fxka_ 26 TVEMQINE 33 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=30.98 E-value=91 Score=22.67 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 007155 146 EKKMKEMEQEIEELKK 161 (615)
Q Consensus 146 eeRisELEkqL~ELeK 161 (615)
..+..+++.++..+..
T Consensus 45 k~kl~~~~~~~~~l~~ 60 (66)
T d1ivsa1 45 EARLKENLEQAERIRE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 7
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=29.94 E-value=1.7e+02 Score=28.15 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHhHhH
Q 007155 73 LRLVEELRERESLLKTE 89 (615)
Q Consensus 73 LRrVeeLeerls~Lr~E 89 (615)
...+.+|..++..|+.-
T Consensus 5 ~~~i~eL~~rl~~Lr~~ 21 (362)
T d1gqea_ 5 NNRIQDLTERSDVLRGY 21 (362)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455554444443
No 8
>d1ou5a1 a.173.1.1 (A:151-354) tRNA CCA-adding enzyme, C-terminal domains {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=26.61 E-value=11 Score=33.71 Aligned_cols=31 Identities=32% Similarity=0.337 Sum_probs=26.2
Q ss_pred HHhhhhhcceeeccccCCCchhHhHHHHHHH
Q 007155 560 LIVQGVRFAFRVHQFAGGFDVETMRAFQELR 590 (615)
Q Consensus 560 ll~q~~~fafrvhqfAGG~d~~~~~af~el~ 590 (615)
-++++||||-|.......+|.+|++|+.+..
T Consensus 18 RILR~~RF~~~~~~~~f~id~~t~~ai~~~~ 48 (204)
T d1ou5a1 18 RILRYFRFYGRIVDKPGDHDPETLEAIAENA 48 (204)
T ss_dssp HHHHHHHHHHHSCSSSSCCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 7899999998887666789999999987654
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=25.80 E-value=1.5e+02 Score=23.36 Aligned_cols=12 Identities=8% Similarity=0.224 Sum_probs=4.4
Q ss_pred HHHhHhHhHHHH
Q 007155 81 ERESLLKTELVE 92 (615)
Q Consensus 81 erls~Lr~Efle 92 (615)
.+...+...+.+
T Consensus 22 ~q~~~le~q~~E 33 (107)
T d1fxka_ 22 VQKQTVEMQINE 33 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.73 E-value=67 Score=24.14 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=9.9
Q ss_pred HHHHHHhhhhhHHHHHHHhHHH
Q 007155 95 LVKASAAIVPVLESEIAAKNTE 116 (615)
Q Consensus 95 lekEa~~kl~eLE~ELeqkekE 116 (615)
++..+++-|..|+.++.....+
T Consensus 41 iL~~A~~yI~~L~~~~~~l~~~ 62 (79)
T d1nlwa_ 41 LLTKAKLHIKKLEDSDRKAVHQ 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444444433333
No 11
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=24.22 E-value=1.3e+02 Score=29.31 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHhHHHH---HHHHHHHHHHh
Q 007155 62 QPRPVPDVAELLRLVEELRERESLLKTELVEHKLVKASAAIVPVLESEIAAKNTELELSFKKIESL---QCENERLKEML 138 (615)
Q Consensus 62 ~~~~spevlElLRrVeeLeerls~Lr~Efle~klekEa~~kl~eLE~ELeqkekELE~LrEk~EEL---EeE~~rLk~eL 138 (615)
+...|.+.-++.+++.+++.+...+..+ .-.+..+++.+++.++..++.+++.+.++.+.. -++...++.++
T Consensus 248 ~~s~P~el~~ler~I~qLe~E~~aL~ke-----~d~~s~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~L 322 (387)
T d1qvra2 248 LESAPEEIDALERKKLQLEIEREALKKE-----KDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRL 322 (387)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHSSC-----SSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHhc-----cchHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHH----------------HHHHHHHHHHHHHHHH
Q 007155 139 EQNKRERE----------------KKMKEMEQEIEELKKA 162 (615)
Q Consensus 139 deeEqEae----------------eRisELEkqL~ELeKe 162 (615)
+....+.+ ..+.+++.++..+...
T Consensus 323 e~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 323 DEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHH
No 12
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=22.81 E-value=1.7e+02 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 007155 144 EREKKMKEMEQEIEELKKAAS 164 (615)
Q Consensus 144 EaeeRisELEkqL~ELeKe~~ 164 (615)
+...++.+||.++.+++....
T Consensus 75 ~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 75 ALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555554443
Done!