BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007156
(615 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/568 (46%), Positives = 359/568 (63%), Gaps = 45/568 (7%)
Query: 73 SGVSGGVQDVYGEDTATEDQPVTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGL 132
SGV G +++Y + S+ GY L R+PH NK LAF+ +ER + GL
Sbjct: 9 SGVDLGTENLYFQ--------------SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGL 54
Query: 133 LPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYT 192
LPP+ SQE+QV +++ N +Y+ +MDLQ+RN+KLFY++L ++E+ +PIVYT
Sbjct: 55 LPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYT 114
Query: 193 PTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG 252
PTVG ACQ+Y ++ +P+G+FI++ D+G + VL WPE I+ IVVTDGERILGLGDLG
Sbjct: 115 PTVGLACQQYSLVFRKPRGLFITIHDRGHIASVLNAWPEDVIKAIVVTDGERILGLGDLG 174
Query: 253 CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAE 312
C+GMGIPVGKL+LYTA GG+ P CLPV +DVGT NE+LL D YIGLRQ+R G EY +
Sbjct: 175 CNGMGIPVGKLALYTACGGMNPQECLPVILDVGTENEELLKDPLYIGLRQRRVRGSEYDD 234
Query: 313 LLHEFMTAVKQNYGERIL----------------------------IQGTASVVLAGLIS 344
L EFM AV YG L IQGTASV +AGL++
Sbjct: 235 FLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLA 294
Query: 345 AMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 404
A++ L+DQ LF GAGEA GIA LI + + K+ +P E+ KKIWLVDSKGLIV
Sbjct: 295 ALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVK 353
Query: 405 SRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 464
R SL K+ +AHEHE +K L V IKPT LIG + G F++++++ MA+ NE+P
Sbjct: 354 GR-ASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIGVAAIGGAFSEQILKDMAAFNERP 412
Query: 465 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGD-NVFVPGQANNAYIFPGL 523
IIF+LSNPTS++EC+AE+ Y ++GRAIFASGSPFDP + PGQ NN+Y+FPG+
Sbjct: 413 IIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGV 472
Query: 524 GLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKA 583
LG++ G ++ D++ QV+ ++ ++G LYPP IR +S IA ++ A
Sbjct: 473 ALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDA 532
Query: 584 YELGLATRLPPPKDLVKYAESCMYSPAY 611
Y+ AT P P++ + S MYS Y
Sbjct: 533 YQEKTATVYPEPQNKEAFVRSQMYSTDY 560
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/540 (47%), Positives = 338/540 (62%), Gaps = 31/540 (5%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
GY +LRDPH NKG AF+ +ER + GLLPP + Q+ QV +L N + L +Y+
Sbjct: 3 GYEVLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ LQ+RN+KLFYK+L ++E PIVYTPTVG ACQ YG + RP+G+FI++ D+G +
Sbjct: 63 LXSLQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
L++WPE I+ IVVTDGERILGLGDLGC+G GIPVGKL+LYTA GG++P CLPV +D
Sbjct: 123 TXLQSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLD 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL------------- 330
VGT+NE LL D YIGLR KR GQ Y +LL EF AV YG L
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFR 242
Query: 331 ---------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 375
IQGTASV +AGL++A++ L+D LF GAGEA GIA LI
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302
Query: 376 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435
K+ + EE K+IW VDSKGLIV R SL K+ +AHEH K L D V IK
Sbjct: 303 XAXQKE-GVSKEEAIKRIWXVDSKGLIVKGR-ASLTPEKEHFAHEHCEXKNLEDIVKDIK 360
Query: 436 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFAS 495
PT+LIG + G FT+++++ A+ N++PIIF+LSNPTS++ECTAE+ Y +++GR IFAS
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420
Query: 496 GSPFDPFEY-GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQE 554
GSPFDP PGQ NN+Y+FPG+ LG+I G + DD+ +V++E
Sbjct: 421 GSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEE 480
Query: 555 NFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTY 614
N +G LYPP I+++S IA +A +AY A+ P P+DL + S +YS Y +
Sbjct: 481 NLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 540
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 486 bits (1252), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/539 (46%), Positives = 347/539 (64%), Gaps = 32/539 (5%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L+ +P NKG+AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 6 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 65
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+M +QERN+KLFY++L D++E L+PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 66 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 125
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +GMGIPVGKL LYTA GIRP CLPV ID
Sbjct: 126 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCID 185
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL------------- 330
VGT+N LL D FY+GL QKR Q+Y +L+ EFM A+ YG L
Sbjct: 186 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFR 245
Query: 331 ---------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 375
IQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 246 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 305
Query: 376 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 433
+ + + + +E +KKIW+ D GL+V R + +++P+ H E + + DAVN
Sbjct: 306 MSMV-ENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 364
Query: 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493
+KP+ +IG +G GR FT +V+ AMAS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 365 LKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 424
Query: 494 ASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVT 552
ASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+T
Sbjct: 425 ASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLT 484
Query: 553 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 611
E +G LYPP NI+++S +IA +V Y +A P P+D KY + + Y
Sbjct: 485 DEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFVYPEPEDKAKYVKEQTWRSEY 543
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 336/539 (62%), Gaps = 32/539 (5%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL------------- 330
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG L
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 331 ---------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 375
IQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 376 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 433
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 325 XS-XVENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 383
Query: 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 384 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 443
Query: 494 ASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVT 552
ASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+T
Sbjct: 444 ASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLT 503
Query: 553 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 611
E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 504 DEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 562
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 336/539 (62%), Gaps = 32/539 (5%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 25 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 84
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 85 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 144
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 145 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 204
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL------------- 330
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG L
Sbjct: 205 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 264
Query: 331 ---------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 375
IQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 265 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 324
Query: 376 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 433
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 325 XS-XVENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 383
Query: 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 384 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 443
Query: 494 ASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVT 552
ASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+T
Sbjct: 444 ASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLT 503
Query: 553 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 611
E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 504 DEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 562
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 336/539 (62%), Gaps = 32/539 (5%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 5 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 64
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 65 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL------------- 330
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG L
Sbjct: 185 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 244
Query: 331 ---------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 375
IQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 245 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 304
Query: 376 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 433
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 305 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 363
Query: 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 364 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 423
Query: 494 ASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVT 552
ASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+T
Sbjct: 424 ASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLT 483
Query: 553 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 611
E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 484 DEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 542
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/539 (45%), Positives = 336/539 (62%), Gaps = 32/539 (5%)
Query: 104 GYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMA 163
G L +P NKG AF+ +ER L+GLLPP + +Q++Q + N+++ PL+KY+
Sbjct: 3 GKPLXLNPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIY 62
Query: 164 MMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVL 223
+ +QERN+KLFY++L D++E L PIVYTPTVG AC +YG I+ RP+G+FIS+ D+G V
Sbjct: 63 IXGIQERNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 122
Query: 224 EVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTID 283
++ NWPE +++ +VVTDGERILGLGDLG +G GIPVGKL LYTA GIRP CLPV ID
Sbjct: 123 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCID 182
Query: 284 VGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL------------- 330
VGT+N LL D FY GL QKR Q+Y +L+ EF A+ YG L
Sbjct: 183 VGTDNIALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFR 242
Query: 331 ---------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIA 375
IQGTA+V LAGL++A K + +++ + LFLGAGEA GIA LI
Sbjct: 243 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIV 302
Query: 376 LEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELV-DAVNA 433
+ + +E +KKIW D GL+V R + +++P+ H E + + DAVN
Sbjct: 303 XSXV-ENGLSEQEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI 361
Query: 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493
+KP+ +IG +G GR FT +V+ A AS+NE+P+IF+LSNPT+Q+ECTAEEAYT ++GR +F
Sbjct: 362 LKPSTIIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLF 421
Query: 494 ASGSPFDPFEYGD-NVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVT 552
ASGSPF P + D VF PGQ NN YIFPG+ L +I+ + D + Q+T
Sbjct: 422 ASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLT 481
Query: 553 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAY 611
E +G LYPP NI+++S +IA +V Y A R P P+D KY + + Y
Sbjct: 482 DEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAKYVKERTWRSEY 540
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 464 bits (1194), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/549 (43%), Positives = 346/549 (63%), Gaps = 38/549 (6%)
Query: 94 VTPWSVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQ 153
VTP S LL++P NKG+ FS ER L GLLPP ++QE Q +++ +R+
Sbjct: 33 VTPKKRSA----ELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE 88
Query: 154 YQVPLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVF 213
L +Y+ + LQ+RN+KLFY+++ D+V+EL+PIVYTPTVG ACQ +G IY +P+G++
Sbjct: 89 QPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLY 148
Query: 214 ISLKDKG--KVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGG 271
I++ D K+ ++L NW E++++ IVVTDGERILGLGDLG +G+GIPVGKL+LY ALGG
Sbjct: 149 ITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGG 208
Query: 272 IRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERIL- 330
++P CLPV +DVGTNN LL+D FYIGLR KR G++Y LL FM A + YG++ L
Sbjct: 209 VQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLI 268
Query: 331 ---------------------------IQGTASVVLAGLISAMKFLGGSLADQRFLFLGA 363
IQGTASV++AGL++ + ++ +++LF GA
Sbjct: 269 QFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGA 328
Query: 364 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAHEHE 422
G A TGIAE+I ++ + + EE +I+L+D GL+ +R E + +H + +A +
Sbjct: 329 GAASTGIAEMIVHQMQNE-GISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDMP 385
Query: 423 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE 482
+++ + A +P LIG S F +EV+ AMA +NE+PIIF+LSNPTS++ECTAEE
Sbjct: 386 ETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEE 445
Query: 483 AYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMXXX 542
AYT++ G A++ASGSPF FE + + PGQ NNAYIFPG+ LG I+ V +D+
Sbjct: 446 AYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLL 505
Query: 543 XXXXXXGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYA 602
VT+++ G +YP K IR+IS IA E+A Y+ G A P P+DL KY
Sbjct: 506 AAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYV 565
Query: 603 ESCMYSPAY 611
+ +Y+ Y
Sbjct: 566 RAQVYNTEY 574
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 138/329 (41%), Gaps = 68/329 (20%)
Query: 238 VVTDGERILGLGDLGC-HGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEF 296
VV+D R+LG GD+ G+G+ GK L LGGI +P+ ID N E D +
Sbjct: 95 VVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGIDA---VPICID-SKNKEGKNDPDA 150
Query: 297 YIGLRQKRAIGQEYAELLHEF----MTAVKQNYGERILI---------------QGTASV 337
I Q+ + H F + + Q +IL QGTASV
Sbjct: 151 VIEFVQR---------IQHTFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTASV 201
Query: 338 VLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVD 397
LAGL++A+K + + + R +F+GAG + T LI + KKI + D
Sbjct: 202 TLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP---------KKIVMFD 252
Query: 398 SKGLIVSSR--LESLQHFKKPW--AHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEV 453
SKG + + R ++ F + W P K A + +LI S G K
Sbjct: 253 SKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVK-- 310
Query: 454 VEAMASLNEKPIIFSLSNPTSQ---SECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFV 510
E + S+ EKPI+F +NP + E AY + GR F
Sbjct: 311 AEWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF----------------- 353
Query: 511 PGQANNAYIFPGLGLGLIMSGAIRVHDDM 539
P Q NN+ FPG+ G ++ A ++ D+M
Sbjct: 354 PNQVNNSVGFPGILKGALIVRARKITDNM 382
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 187/436 (42%), Gaps = 85/436 (19%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDD 294
VV+DG RILGLG++G G+PV GK L+ GG+ P+ I N K +D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGVD---AFPIMIKEQEPN-KFID- 120
Query: 295 EFYIGLRQKRAIGQEYAELLHEFMTAVKQNY-----GERILI-------QGTASVVLAGL 342
+AI + + E + + K Y E + I QGTA+VVLAGL
Sbjct: 121 -------IVKAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGL 173
Query: 343 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402
++A+K +G +++ GAG AG L I + + E R + LV+ K I
Sbjct: 174 LNALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGVKPENVR-VVELVNGKPRI 227
Query: 403 VSSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEV 453
++S L+ + F + W E P + L DA +LI + G K
Sbjct: 228 LTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA------DVLISFTRPGPGVIKP- 280
Query: 454 VEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQ 513
+ + +NE I+F L+NP E EEA G I A+G +Y P Q
Sbjct: 281 -QWIEKMNEDAIVFPLANPV--PEILPEEAK--KAGARIVATGRS----DY------PNQ 325
Query: 514 ANNAYIFPGLGLGLIMSGAIRVHDDMXXXXXXXXXGQVTQENFDKGLLYPPFKNIRKISA 573
NN FPG+ G + A + D M V +E ++ ++ P I + A
Sbjct: 326 INNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIV-EEPSEENIIPSPLNPI--VYA 382
Query: 574 HIAAEVAAKAYELGLA 589
A VA +A + G+A
Sbjct: 383 REARAVAEEAMKEGVA 398
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 164/383 (42%), Gaps = 80/383 (20%)
Query: 177 KLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQV 236
K+ +++ EEL + YTP V E C++ +D GKV E + K V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKEIA-------------RDPGKVYE----YTSKGNLV 66
Query: 237 IVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDE 295
VV+DG RILGLG++G G+ + GK L+ GG+ P+ I N K +D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGVD---AFPIXIKEQEPN-KFID-- 120
Query: 296 FYIGLRQKRAIGQEYAELLHEFMTAVKQNY-----GERILI-------QGTASVVLAGLI 343
+AI + + E + + K Y E + I QGTA+VVLAGL+
Sbjct: 121 ------IVKAIAPTFGGINLEDIASPKCFYILERLREELDIPVFHDDQQGTAAVVLAGLL 174
Query: 344 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 403
+A+K +G +++ GAG AG L I + + E R + LV+ K I+
Sbjct: 175 NALKVVGKKISEITLALFGAGAAG-----FATLRILTEAGVKPENVR-VVELVNGKPRIL 228
Query: 404 SSRLESLQHFK-KPWAH--------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVV 454
+S L+ + F + W E P + L DA +LI + G K
Sbjct: 229 TSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA------DVLISFTRPGPGVIKP-- 280
Query: 455 EAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQA 514
+ + NE I+F L+NP E EEA G I A+G +Y P Q
Sbjct: 281 QWIEKXNEDAIVFPLANPV--PEILPEEAK--KAGARIVATGRS----DY------PNQI 326
Query: 515 NNAYIFPGLGLGLIMSGAIRVHD 537
NN FPG+ G + A + D
Sbjct: 327 NNLLGFPGIFRGALDVRARTITD 349
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 135/356 (37%), Gaps = 82/356 (23%)
Query: 187 LPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERIL 246
L I YTP V KDK + + K V V++DG +L
Sbjct: 36 LSIAYTPGVASVSSAIA-------------KDK----TLAYDLTTKKNTVAVISDGTAVL 78
Query: 247 GLGDLGCHG-MGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRA 305
GLGD+G M + GK +L+ A G+ +P+ +D D E I + +A
Sbjct: 79 GLGDIGPEAAMPVMEGKAALFKAFAGVD---AIPIVLDTK-------DTEEIISIV--KA 126
Query: 306 IGQEYAELLHEFMTAVKQNYGERILIQ------------GTASVVLAGLISAMKFLGGSL 353
+ + + E ++A + E+ LI+ GTA VVLA + +++K L SL
Sbjct: 127 LAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSL 186
Query: 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL--Q 411
+ + G G AG I T L K+ +VD G+I L
Sbjct: 187 DEVSIVVNGGGSAGLSI-----------TRKLLAAGATKVTVVDKFGIINEQEAAQLAPH 235
Query: 412 HFKKPWAHEHE-PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 470
H E L DA+ I IG S G E + MA+ +P+IF+++
Sbjct: 236 HLDIAKVTNREFKSGTLEDALEG--ADIFIGVSAPG-VLKAEWISKMAA---RPVIFAMA 289
Query: 471 NPTSQ---SECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGL 523
NP + E AY GR+ F P Q NN FPG+
Sbjct: 290 NPIPEIYPDEALEAGAYIVGTGRSDF-----------------PNQINNVLAFPGI 328
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 146/361 (40%), Gaps = 72/361 (19%)
Query: 185 ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGER 244
E L ++YTP V + + +D K W V VV+DG
Sbjct: 28 ETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN----TVAVVSDGSA 70
Query: 245 ILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQ 302
+LGLG++G +G +PV GK L+ A I P+ + + EK++ + +
Sbjct: 71 VLGLGNIGPYG-ALPVMEGKAFLFKAFADID---AFPICLS-ESEEEKIIS---IVKSLE 122
Query: 303 KRAIGQEYAELLHEFMTAVKQNYGERILI-------QGTASVVLAGLISAMKFLGGSLAD 355
G ++ + Q E + I QGTA VV A ++A+K + +
Sbjct: 123 PSFGGINLEDIGAPKCFRILQRLSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEE 182
Query: 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFK 414
+ + G G AG I + + L+ K + VD KG++ + E+ L +
Sbjct: 183 VKVVVNGIGAAGYNIVKFL-----------LDLGVKNVVAVDRKGILNENDPETCLNEYH 231
Query: 415 KPWAHEHEPVKELVDAVNAIK-PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
A P + D A++ IG S +G E ++ M+ KP+IF+L+NP
Sbjct: 232 LEIARITNPERLSGDLETALEGADFFIGVS-RGNILKPEWIKKMS---RKPVIFALANPV 287
Query: 474 SQSECT-AEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 532
+ + A EA G I A+G D+ P Q NN FPG IM GA
Sbjct: 288 PEIDPELAREA-----GAFIVATGR-------SDH---PNQVNNLLAFPG-----IMKGA 327
Query: 533 I 533
+
Sbjct: 328 V 328
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/356 (24%), Positives = 142/356 (39%), Gaps = 67/356 (18%)
Query: 185 ELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGER 244
E L ++YTP V + + +D K W V VV+DG
Sbjct: 38 ETLSLLYTPGVADVARACA-------------EDPEKTYVYTSRWN----TVAVVSDGSA 80
Query: 245 ILGLGDLGCHGMGIPV--GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQ 302
+LGLG++G +G +PV GK L+ A I P+ + + EK++ + +
Sbjct: 81 VLGLGNIGPYG-ALPVXEGKAFLFKAFADID---AFPICLS-ESEEEKIIS---IVKSLE 132
Query: 303 KRAIGQEYAELLHEFMTAVKQNYGERILI-------QGTASVVLAGLISAMKFLGGSLAD 355
G ++ + Q E I QGTA VV A ++A+K + +
Sbjct: 133 PSFGGINLEDIGAPKCFRILQRLSEEXNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEE 192
Query: 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLES-LQHFK 414
+ + G G AG I + + L+ K + VD KG++ + E+ L +
Sbjct: 193 VKVVVNGIGAAGYNIVKFL-----------LDLGVKNVVAVDRKGILNENDPETCLNEYH 241
Query: 415 KPWAHEHEPVKELVDAVNAIK-PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
A P + D A++ IG S +G E ++ + KP+IF+L+NP
Sbjct: 242 LEIARITNPERLSGDLETALEGADFFIGVS-RGNILKPEWIKKXS---RKPVIFALANPV 297
Query: 474 SQSECT-AEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLI 528
+ + A EA G I A+G D+ P Q NN FPG+ G +
Sbjct: 298 PEIDPELAREA-----GAFIVATGR-------SDH---PNQVNNLLAFPGIXKGAV 338
>pdb|1SI7|A Chain A, Structure Of E. Coli Trna Psi 13 Pseudouridine Synthase
Trud
Length = 369
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 360 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 414
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 179 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 235
Query: 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 471
V ++VD +A++ +G+G F T+E+ E +N+K ++ + +
Sbjct: 236 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELMITAAL 279
Query: 472 PTSQSECTAEEAYTWSQG 489
P S T EA + Q
Sbjct: 280 PGSGEWGTQREALAFEQA 297
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 551 VTQENFDKGLLYPPFKNIR 569
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 551 VTQENFDKGLLYPPFKNIR 569
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNVK 233
>pdb|1SB7|A Chain A, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
pdb|1SB7|B Chain B, Crystal Structure Of The E.Coli Pseudouridine Synthase
Trud
Length = 368
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 360 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 414
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 178 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 234
Query: 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 471
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 235 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 278
Query: 472 PTSQSECTAEEAYTWSQG 489
P S T EA + Q
Sbjct: 279 PGSGEWGTQREALAFEQA 296
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 551 VTQENFDKGLLYPPFKNIR 569
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 551 VTQENFDKGLLYPPFKNIR 569
V QE +D GL YPPF N++
Sbjct: 215 VNQEAWDHGLAYPPFNNMK 233
>pdb|1SZW|A Chain A, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
pdb|1SZW|B Chain B, Crystal Structure Of E. Coli Trna Pseudouridine Synthase
Trud
Length = 379
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 27/138 (19%)
Query: 360 FLGAGEAGTGIAELIALEISKQTNMPLEETRKK-IWLVDSKGL----IVSSRLESLQHFK 414
+ GA G G + L + QTN P+ + K+ WL ++ IV+ RL+
Sbjct: 181 YFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKAD--- 237
Query: 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTF---TKEVVEAMASLNEKPIIFSLSN 471
V ++VD +A++ +G+G F T+E+ E +N+K + + +
Sbjct: 238 ---------VNQVVDG-DALQ------LAGRGSWFVATTEELAELQRRVNDKELXITAAL 281
Query: 472 PTSQSECTAEEAYTWSQG 489
P S T EA + Q
Sbjct: 282 PGSGEWGTQREALAFEQA 299
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 415 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 474 SQSECTAE 481
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 210 QGVFISLKDKGKVLEVLRNWP---EKNIQVIVVTDGERILGLG 249
G+ I + G++L+ ++N P KN+Q +V+ + +RIL +G
Sbjct: 175 NGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 368 AVVDLQDRNTELSYQLLLDSI 388
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 415 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 474 SQSECTAE 481
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 415 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 474 SQSECTAE 481
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 415 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 474 SQSECTAE 481
+ +E
Sbjct: 69 LAGQLYSE 76
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 357 AVVDLQDRNTELSYQLLLDSI 377
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 19/21 (90%)
Query: 163 AMMDLQERNQKLFYKLLIDNV 183
A++DLQ+RN +L Y+LL+D++
Sbjct: 356 AVVDLQDRNTELSYQLLLDSI 376
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 415 KPWAHEHEPVKELVDAVN-AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473
+P + + + +LVD + +K L+G +G G+TFT + +A +N KP + N T
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 68
Query: 474 SQSECTAE 481
+ +E
Sbjct: 69 LAGQLYSE 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,240,527
Number of Sequences: 62578
Number of extensions: 783886
Number of successful extensions: 1939
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1866
Number of HSP's gapped (non-prelim): 44
length of query: 615
length of database: 14,973,337
effective HSP length: 105
effective length of query: 510
effective length of database: 8,402,647
effective search space: 4285349970
effective search space used: 4285349970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)