Query 007156
Match_columns 615
No_of_seqs 258 out of 1405
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 19:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-202 8E-207 1602.5 46.0 532 82-614 8-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 9E-193 2E-197 1560.6 48.2 512 100-615 13-561 (563)
3 PLN03129 NADP-dependent malic 100.0 2E-192 5E-197 1561.8 50.2 515 101-615 39-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 2E-190 5E-195 1540.9 48.7 511 98-610 13-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 3E-110 7E-115 882.5 30.7 419 137-615 1-432 (432)
6 cd05312 NAD_bind_1_malic_enz N 100.0 3.3E-98 7E-103 764.0 29.0 277 331-609 1-279 (279)
7 PRK12862 malic enzyme; Reviewe 100.0 8.6E-98 2E-102 844.8 31.4 364 184-604 38-424 (763)
8 PRK12861 malic enzyme; Reviewe 100.0 1.5E-97 3E-102 839.1 30.6 364 184-604 34-420 (764)
9 PRK07232 bifunctional malic en 100.0 9.3E-97 2E-101 832.9 31.7 354 184-592 30-406 (752)
10 PF03949 Malic_M: Malic enzyme 100.0 5.1E-95 1.1E-99 732.5 19.3 252 331-584 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 4.5E-92 9.6E-97 710.5 25.2 251 331-583 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 4.6E-72 9.9E-77 540.5 6.6 164 168-331 1-164 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 8.8E-58 1.9E-62 454.0 21.7 222 332-583 2-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 3.5E-08 7.5E-13 84.5 11.7 86 333-470 1-86 (86)
15 TIGR01035 hemA glutamyl-tRNA r 97.5 0.001 2.2E-08 72.7 12.7 147 305-473 131-280 (417)
16 PLN02477 glutamate dehydrogena 97.2 0.0053 1.1E-07 67.6 13.8 130 333-485 184-324 (410)
17 PRK00045 hemA glutamyl-tRNA re 97.2 0.0037 8E-08 68.4 12.5 121 332-473 160-283 (423)
18 PRK09414 glutamate dehydrogena 97.1 0.012 2.6E-07 65.4 16.1 161 305-485 138-357 (445)
19 cd05211 NAD_bind_Glu_Leu_Phe_V 97.0 0.0065 1.4E-07 61.3 11.8 130 334-485 2-140 (217)
20 PTZ00079 NADP-specific glutama 97.0 0.032 6.9E-07 62.3 17.7 153 305-474 143-358 (454)
21 cd05213 NAD_bind_Glutamyl_tRNA 96.9 0.013 2.8E-07 61.6 12.6 119 332-473 156-276 (311)
22 PRK14031 glutamate dehydrogena 96.8 0.022 4.7E-07 63.4 14.8 153 305-473 134-347 (444)
23 PRK05476 S-adenosyl-L-homocyst 96.7 0.02 4.3E-07 63.4 13.2 111 332-473 192-302 (425)
24 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.013 2.8E-07 57.0 10.4 86 344-473 33-119 (168)
25 PF01488 Shikimate_DH: Shikima 96.7 0.0017 3.7E-08 60.2 3.9 102 351-474 8-113 (135)
26 PRK14030 glutamate dehydrogena 96.7 0.041 8.9E-07 61.3 15.1 162 305-485 134-357 (445)
27 TIGR02853 spore_dpaA dipicolin 96.4 0.025 5.5E-07 59.2 11.0 139 331-498 127-265 (287)
28 PRK14192 bifunctional 5,10-met 96.4 0.017 3.8E-07 60.5 9.7 163 262-473 54-235 (283)
29 COG0373 HemA Glutamyl-tRNA red 96.4 0.042 9.1E-07 60.7 12.8 254 263-587 94-361 (414)
30 TIGR00936 ahcY adenosylhomocys 96.3 0.045 9.8E-07 60.3 12.9 118 332-483 175-293 (406)
31 cd01076 NAD_bind_1_Glu_DH NAD( 96.3 0.032 6.9E-07 56.7 10.8 122 333-473 9-140 (227)
32 cd00401 AdoHcyase S-adenosyl-L 96.3 0.018 4E-07 63.5 9.7 120 332-485 182-302 (413)
33 PLN00203 glutamyl-tRNA reducta 96.3 0.036 7.8E-07 62.8 12.3 180 263-473 180-372 (519)
34 PRK08306 dipicolinate synthase 96.1 0.041 8.9E-07 57.8 10.9 128 341-498 138-266 (296)
35 PRK14982 acyl-ACP reductase; P 96.1 0.035 7.5E-07 59.9 10.5 113 334-474 134-250 (340)
36 cd05313 NAD_bind_2_Glu_DH NAD( 96.0 0.14 3.1E-06 53.3 13.8 126 332-474 15-159 (254)
37 PLN02494 adenosylhomocysteinas 96.0 0.076 1.6E-06 59.7 12.4 122 332-486 234-355 (477)
38 PRK13940 glutamyl-tRNA reducta 96.0 0.068 1.5E-06 58.9 12.0 115 332-473 159-276 (414)
39 PLN00106 malate dehydrogenase 95.8 0.056 1.2E-06 57.8 10.4 118 340-473 4-138 (323)
40 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.077 1.7E-06 52.6 10.0 123 333-485 4-129 (200)
41 cd01065 NAD_bind_Shikimate_DH 95.7 0.041 8.8E-07 50.7 7.6 108 340-473 4-120 (155)
42 PRK14175 bifunctional 5,10-met 95.7 0.046 9.9E-07 57.7 8.8 83 335-455 138-221 (286)
43 PRK12549 shikimate 5-dehydroge 95.6 0.037 8E-07 57.8 8.0 90 340-446 112-203 (284)
44 PRK08293 3-hydroxybutyryl-CoA 95.3 0.21 4.6E-06 51.6 12.2 192 356-602 4-221 (287)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.3 0.1 2.2E-06 50.7 9.3 54 334-399 7-61 (194)
46 TIGR00518 alaDH alanine dehydr 95.0 0.094 2E-06 56.8 8.7 95 353-471 165-268 (370)
47 PTZ00075 Adenosylhomocysteinas 94.9 0.35 7.6E-06 54.5 13.1 110 332-472 234-343 (476)
48 TIGR01809 Shik-DH-AROM shikima 94.9 0.069 1.5E-06 55.6 7.1 93 341-453 109-208 (282)
49 PF03807 F420_oxidored: NADP o 94.7 0.061 1.3E-06 46.0 5.2 95 357-472 1-96 (96)
50 PRK00676 hemA glutamyl-tRNA re 94.5 0.24 5.2E-06 53.6 10.2 90 351-474 170-265 (338)
51 PF00670 AdoHcyase_NAD: S-aden 94.4 0.21 4.6E-06 48.9 8.9 120 333-485 4-123 (162)
52 PF00208 ELFV_dehydrog: Glutam 94.3 0.092 2E-06 54.0 6.3 127 333-473 9-151 (244)
53 cd00650 LDH_MDH_like NAD-depen 94.3 0.098 2.1E-06 53.5 6.4 126 358-497 1-145 (263)
54 TIGR02356 adenyl_thiF thiazole 94.1 0.09 2E-06 52.1 5.7 38 351-399 17-54 (202)
55 cd05296 GH4_P_beta_glucosidase 94.0 0.12 2.6E-06 57.2 6.9 125 356-496 1-166 (419)
56 PRK10792 bifunctional 5,10-met 94.0 0.56 1.2E-05 49.7 11.5 91 336-470 140-231 (285)
57 PRK05086 malate dehydrogenase; 93.9 0.32 7E-06 51.6 9.7 105 356-473 1-121 (312)
58 PRK14191 bifunctional 5,10-met 93.3 0.34 7.4E-06 51.3 8.6 82 336-455 138-220 (285)
59 cd05212 NAD_bind_m-THF_DH_Cycl 93.3 0.8 1.7E-05 43.6 10.2 82 337-455 10-91 (140)
60 TIGR02355 moeB molybdopterin s 93.2 1.3 2.8E-05 45.4 12.4 38 351-399 20-57 (240)
61 TIGR02354 thiF_fam2 thiamine b 93.2 0.18 3.9E-06 50.3 6.0 108 351-478 17-127 (200)
62 PRK00066 ldh L-lactate dehydro 93.0 0.24 5.1E-06 52.6 6.9 127 355-498 6-149 (315)
63 PTZ00325 malate dehydrogenase; 92.9 0.65 1.4E-05 49.8 10.1 107 353-473 6-128 (321)
64 cd05291 HicDH_like L-2-hydroxy 92.8 0.38 8.2E-06 50.5 8.1 126 357-498 2-144 (306)
65 PRK07531 bifunctional 3-hydrox 92.8 1.5 3.3E-05 49.3 13.3 123 356-503 5-144 (495)
66 PRK12749 quinate/shikimate deh 92.2 0.31 6.8E-06 51.2 6.6 49 340-399 109-157 (288)
67 COG0334 GdhA Glutamate dehydro 92.2 2.4 5.2E-05 47.2 13.5 151 304-474 111-317 (411)
68 cd01079 NAD_bind_m-THF_DH NAD 92.2 0.99 2.1E-05 45.6 9.7 89 350-455 57-147 (197)
69 cd05197 GH4_glycoside_hydrolas 92.1 0.41 8.9E-06 53.1 7.5 125 356-496 1-166 (425)
70 PRK00257 erythronate-4-phospha 92.0 1.2 2.5E-05 49.0 10.7 161 332-533 93-265 (381)
71 PRK08605 D-lactate dehydrogena 91.9 0.82 1.8E-05 48.8 9.4 111 349-491 140-255 (332)
72 PRK12475 thiamine/molybdopteri 91.8 0.28 6E-06 52.7 5.8 39 351-400 20-58 (338)
73 PRK09424 pntA NAD(P) transhydr 91.8 0.76 1.7E-05 52.3 9.4 108 352-480 162-296 (509)
74 cd00757 ThiF_MoeB_HesA_family 91.7 0.58 1.3E-05 47.1 7.6 104 351-473 17-123 (228)
75 PRK14027 quinate/shikimate deh 91.4 0.42 9.2E-06 50.2 6.5 48 341-399 113-160 (283)
76 PF01210 NAD_Gly3P_dh_N: NAD-d 91.4 0.31 6.8E-06 46.2 5.0 85 357-461 1-93 (157)
77 PF00056 Ldh_1_N: lactate/mala 91.4 0.12 2.6E-06 48.5 2.2 104 357-473 2-121 (141)
78 PRK08762 molybdopterin biosynt 91.4 0.37 8.1E-06 52.1 6.2 38 351-399 131-168 (376)
79 PRK14189 bifunctional 5,10-met 91.1 0.9 2E-05 48.2 8.5 82 336-455 139-221 (285)
80 cd01487 E1_ThiF_like E1_ThiF_l 91.1 0.79 1.7E-05 44.6 7.5 32 357-399 1-32 (174)
81 PTZ00082 L-lactate dehydrogena 91.0 0.91 2E-05 48.4 8.6 125 355-497 6-154 (321)
82 PLN02928 oxidoreductase family 91.0 2.3 5.1E-05 45.8 11.7 121 350-494 154-284 (347)
83 PRK15438 erythronate-4-phospha 90.8 1.9 4.1E-05 47.4 10.9 117 332-484 93-217 (378)
84 PRK07688 thiamine/molybdopteri 90.7 0.39 8.5E-06 51.6 5.5 38 351-399 20-57 (339)
85 PRK12548 shikimate 5-dehydroge 90.6 0.58 1.3E-05 48.9 6.6 49 340-399 111-159 (289)
86 PRK14176 bifunctional 5,10-met 90.6 1.2 2.6E-05 47.4 8.8 82 336-455 145-227 (287)
87 PTZ00117 malate dehydrogenase; 90.6 1.2 2.7E-05 47.2 9.1 126 354-497 4-148 (319)
88 PRK14178 bifunctional 5,10-met 90.6 0.84 1.8E-05 48.3 7.7 82 336-455 133-215 (279)
89 cd00704 MDH Malate dehydrogena 90.3 1.4 3E-05 47.2 9.2 110 357-473 2-129 (323)
90 PRK14194 bifunctional 5,10-met 90.3 1.3 2.8E-05 47.4 8.8 91 336-470 140-231 (301)
91 PRK00258 aroE shikimate 5-dehy 90.2 0.71 1.5E-05 47.8 6.7 87 340-446 107-196 (278)
92 cd05297 GH4_alpha_glucosidase_ 90.1 1 2.2E-05 49.8 8.1 126 357-498 2-170 (423)
93 PRK06130 3-hydroxybutyryl-CoA 90.1 1.1 2.5E-05 46.5 8.2 32 356-399 5-36 (311)
94 PRK08223 hypothetical protein; 90.1 1.2 2.6E-05 47.3 8.4 38 351-399 23-60 (287)
95 PRK06035 3-hydroxyacyl-CoA deh 90.1 5.3 0.00012 41.4 13.0 32 356-399 4-35 (291)
96 PRK06129 3-hydroxyacyl-CoA deh 90.0 0.61 1.3E-05 48.8 6.1 32 356-399 3-34 (308)
97 PRK14619 NAD(P)H-dependent gly 90.0 2.7 5.7E-05 44.1 10.8 33 355-399 4-36 (308)
98 COG0111 SerA Phosphoglycerate 89.9 2.8 6E-05 45.1 11.0 102 332-458 101-224 (324)
99 PF00899 ThiF: ThiF family; I 89.8 0.53 1.2E-05 43.2 4.9 35 354-399 1-35 (135)
100 COG0578 GlpA Glycerol-3-phosph 89.8 2.3 5.1E-05 48.7 10.9 161 354-587 11-178 (532)
101 PRK05600 thiamine biosynthesis 89.8 1 2.2E-05 49.2 7.7 102 351-468 37-162 (370)
102 PRK09260 3-hydroxybutyryl-CoA 89.7 0.76 1.6E-05 47.5 6.5 123 356-503 2-145 (288)
103 PRK15076 alpha-galactosidase; 89.7 0.94 2E-05 50.3 7.5 129 356-500 2-174 (431)
104 PRK14851 hypothetical protein; 89.6 1.4 3E-05 51.9 9.1 122 351-489 39-194 (679)
105 PRK05597 molybdopterin biosynt 89.5 1.1 2.3E-05 48.5 7.6 38 351-399 24-61 (355)
106 cd00755 YgdL_like Family of ac 89.4 0.76 1.6E-05 47.1 6.1 105 352-475 8-116 (231)
107 PRK06223 malate dehydrogenase; 89.1 1 2.2E-05 46.9 6.9 127 356-500 3-148 (307)
108 COG0169 AroE Shikimate 5-dehyd 89.0 0.91 2E-05 48.0 6.5 85 341-446 110-201 (283)
109 PRK07878 molybdopterin biosynt 89.0 1.2 2.6E-05 48.8 7.6 38 351-399 38-75 (392)
110 TIGR02992 ectoine_eutC ectoine 88.9 2.1 4.5E-05 45.6 9.2 104 354-482 128-237 (326)
111 PF02056 Glyco_hydro_4: Family 88.9 0.93 2E-05 45.2 6.1 109 357-479 1-151 (183)
112 PF02826 2-Hacid_dh_C: D-isome 88.9 1.4 3E-05 42.6 7.2 115 346-492 27-147 (178)
113 cd01337 MDH_glyoxysomal_mitoch 88.7 3 6.4E-05 44.6 10.1 102 357-473 2-120 (310)
114 TIGR01758 MDH_euk_cyt malate d 88.6 2.9 6.4E-05 44.8 10.1 135 357-502 1-156 (324)
115 TIGR01915 npdG NADPH-dependent 88.5 1.8 4E-05 43.0 8.0 96 357-475 2-106 (219)
116 PRK07411 hypothetical protein; 88.5 1.3 2.8E-05 48.5 7.5 38 351-399 34-71 (390)
117 cd01336 MDH_cytoplasmic_cytoso 88.2 3.7 8.1E-05 43.9 10.6 135 356-500 3-157 (325)
118 TIGR01763 MalateDH_bact malate 88.0 1.3 2.8E-05 46.8 6.9 124 356-497 2-144 (305)
119 PRK14183 bifunctional 5,10-met 88.0 2.3 5E-05 45.1 8.6 82 336-455 138-220 (281)
120 PRK08328 hypothetical protein; 87.8 0.58 1.3E-05 47.5 4.0 104 351-474 23-131 (231)
121 PLN02306 hydroxypyruvate reduc 87.6 3.6 7.8E-05 45.3 10.2 144 350-524 160-322 (386)
122 PRK14190 bifunctional 5,10-met 87.4 2.5 5.4E-05 44.9 8.5 82 336-455 139-221 (284)
123 cd05298 GH4_GlvA_pagL_like Gly 87.4 1.4 2.9E-05 49.3 6.9 130 356-500 1-171 (437)
124 PRK14184 bifunctional 5,10-met 87.4 2.1 4.5E-05 45.5 8.0 86 336-455 138-224 (286)
125 cd01492 Aos1_SUMO Ubiquitin ac 87.3 0.62 1.3E-05 46.3 3.8 77 351-444 17-97 (197)
126 PF01262 AlaDh_PNT_C: Alanine 87.2 0.25 5.4E-06 47.3 1.0 90 353-458 18-130 (168)
127 TIGR01772 MDH_euk_gproteo mala 87.1 4.5 9.8E-05 43.3 10.3 126 357-497 1-146 (312)
128 cd01338 MDH_choloroplast_like 87.0 3.7 8.1E-05 44.0 9.7 111 356-473 3-131 (322)
129 TIGR00561 pntA NAD(P) transhyd 86.9 1.7 3.7E-05 49.6 7.4 121 332-470 136-284 (511)
130 PRK08374 homoserine dehydrogen 86.9 3.3 7.2E-05 44.5 9.3 105 356-467 3-120 (336)
131 PRK14106 murD UDP-N-acetylmura 86.7 2.7 5.8E-05 45.8 8.6 119 352-509 2-121 (450)
132 PRK12550 shikimate 5-dehydroge 86.6 1.6 3.4E-05 45.8 6.5 47 341-399 109-155 (272)
133 PRK07679 pyrroline-5-carboxyla 86.5 15 0.00032 37.9 13.5 108 355-487 3-111 (279)
134 PRK08644 thiamine biosynthesis 86.1 0.82 1.8E-05 45.9 4.0 38 351-399 24-61 (212)
135 PRK14179 bifunctional 5,10-met 86.1 3.1 6.8E-05 44.2 8.4 83 335-455 138-221 (284)
136 PRK12921 2-dehydropantoate 2-r 86.1 1.9 4E-05 44.3 6.7 101 357-474 2-106 (305)
137 PRK07634 pyrroline-5-carboxyla 86.1 1.9 4.1E-05 43.0 6.5 118 354-496 3-121 (245)
138 PRK11880 pyrroline-5-carboxyla 86.0 3.3 7.1E-05 42.0 8.3 119 356-503 3-122 (267)
139 TIGR00872 gnd_rel 6-phosphoglu 85.6 2.8 6.2E-05 43.8 7.8 99 357-481 2-102 (298)
140 cd05290 LDH_3 A subgroup of L- 85.5 2.7 5.8E-05 44.7 7.7 102 357-473 1-122 (307)
141 PF02882 THF_DHG_CYH_C: Tetrah 85.5 4.1 9E-05 39.8 8.3 82 336-455 17-99 (160)
142 PRK13243 glyoxylate reductase; 85.4 8.7 0.00019 41.2 11.5 140 349-525 144-291 (333)
143 PRK14174 bifunctional 5,10-met 85.3 3.2 7E-05 44.3 8.1 85 337-455 141-226 (295)
144 PRK14177 bifunctional 5,10-met 85.1 4.3 9.3E-05 43.2 8.8 81 337-455 141-222 (284)
145 TIGR01759 MalateDH-SF1 malate 85.0 5.7 0.00012 42.7 9.9 122 356-487 4-143 (323)
146 PRK15116 sulfur acceptor prote 84.8 3.1 6.6E-05 43.8 7.6 108 351-476 26-136 (268)
147 PRK14618 NAD(P)H-dependent gly 84.8 1.6 3.4E-05 46.0 5.5 95 356-473 5-107 (328)
148 PRK14172 bifunctional 5,10-met 84.7 4.6 0.0001 42.8 8.9 83 335-455 138-221 (278)
149 PRK00094 gpsA NAD(P)H-dependen 84.6 1.8 4E-05 44.6 5.9 98 357-474 3-109 (325)
150 COG0686 Ald Alanine dehydrogen 84.5 1.5 3.2E-05 47.6 5.1 106 353-482 166-290 (371)
151 cd01485 E1-1_like Ubiquitin ac 84.3 0.94 2E-05 45.0 3.4 74 351-441 15-94 (198)
152 PRK08291 ectoine utilization p 84.0 5.2 0.00011 42.6 9.1 119 334-482 116-240 (330)
153 PRK01710 murD UDP-N-acetylmura 84.0 5.4 0.00012 44.1 9.4 118 353-509 12-130 (458)
154 PLN02516 methylenetetrahydrofo 83.7 5.1 0.00011 42.9 8.8 82 336-455 148-230 (299)
155 cd01339 LDH-like_MDH L-lactate 83.6 2.6 5.6E-05 44.0 6.5 121 358-497 1-141 (300)
156 PRK05690 molybdopterin biosynt 83.4 1.5 3.3E-05 44.9 4.6 38 351-399 28-65 (245)
157 PRK10886 DnaA initiator-associ 83.1 17 0.00036 36.6 11.6 91 353-458 39-130 (196)
158 PRK14188 bifunctional 5,10-met 83.1 4.4 9.6E-05 43.2 8.0 80 336-453 139-219 (296)
159 PRK14171 bifunctional 5,10-met 83.0 5.8 0.00013 42.3 8.8 83 335-455 139-222 (288)
160 PRK14168 bifunctional 5,10-met 82.7 6.1 0.00013 42.3 8.8 86 336-455 142-228 (297)
161 PRK14187 bifunctional 5,10-met 82.5 6.4 0.00014 42.1 8.9 82 336-455 141-223 (294)
162 PRK14193 bifunctional 5,10-met 82.5 6 0.00013 42.1 8.6 84 336-455 139-223 (284)
163 PRK14166 bifunctional 5,10-met 82.5 6.3 0.00014 41.9 8.8 83 335-455 137-220 (282)
164 PRK02472 murD UDP-N-acetylmura 82.4 5.5 0.00012 43.4 8.6 114 353-497 3-116 (447)
165 PRK05442 malate dehydrogenase; 82.3 8.4 0.00018 41.5 9.8 122 356-487 5-144 (326)
166 COG1486 CelF Alpha-galactosida 82.2 1.2 2.7E-05 49.8 3.6 124 354-492 2-166 (442)
167 cd05293 LDH_1 A subgroup of L- 81.8 4.8 0.0001 42.9 7.7 124 356-497 4-146 (312)
168 cd01483 E1_enzyme_family Super 81.7 2.1 4.6E-05 39.5 4.4 93 357-471 1-98 (143)
169 PRK07066 3-hydroxybutyryl-CoA 81.5 4.6 0.0001 43.4 7.5 32 356-399 8-39 (321)
170 PRK06522 2-dehydropantoate 2-r 81.4 4.8 0.0001 41.1 7.3 96 357-473 2-103 (304)
171 PRK06436 glycerate dehydrogena 81.2 19 0.00042 38.3 11.9 91 350-472 117-211 (303)
172 TIGR01381 E1_like_apg7 E1-like 81.2 1.5 3.2E-05 51.4 3.9 40 351-401 334-373 (664)
173 PTZ00345 glycerol-3-phosphate 81.2 6 0.00013 43.3 8.3 24 353-376 9-32 (365)
174 TIGR00507 aroE shikimate 5-deh 81.0 3.8 8.2E-05 42.2 6.4 48 340-399 102-149 (270)
175 PF07992 Pyr_redox_2: Pyridine 81.0 2.5 5.4E-05 39.9 4.8 32 357-400 1-32 (201)
176 PRK14170 bifunctional 5,10-met 80.8 7.9 0.00017 41.2 8.8 83 335-455 137-220 (284)
177 KOG0029 Amine oxidase [Seconda 80.6 0.96 2.1E-05 51.3 2.1 24 354-377 14-37 (501)
178 PRK14185 bifunctional 5,10-met 80.2 8.9 0.00019 41.1 9.0 86 336-455 138-224 (293)
179 PRK06141 ornithine cyclodeamin 80.2 11 0.00024 40.0 9.7 104 354-482 124-232 (314)
180 PRK09310 aroDE bifunctional 3- 79.8 3.7 8.1E-05 46.2 6.4 48 340-399 317-364 (477)
181 PRK01438 murD UDP-N-acetylmura 79.6 5.6 0.00012 44.0 7.6 40 348-399 9-48 (480)
182 PRK00141 murD UDP-N-acetylmura 79.5 8.6 0.00019 42.9 9.1 119 352-509 12-134 (473)
183 PRK12480 D-lactate dehydrogena 79.1 12 0.00026 40.2 9.7 112 349-494 140-256 (330)
184 KOG0685 Flavin-containing amin 79.0 0.99 2.2E-05 51.0 1.5 26 351-376 17-42 (498)
185 PRK07680 late competence prote 78.9 4.8 0.0001 41.3 6.4 98 357-474 2-100 (273)
186 PRK09599 6-phosphogluconate de 78.8 6 0.00013 41.3 7.2 93 357-473 2-97 (301)
187 COG0345 ProC Pyrroline-5-carbo 78.8 11 0.00024 39.7 9.1 106 356-488 2-108 (266)
188 PRK07530 3-hydroxybutyryl-CoA 78.5 10 0.00022 39.3 8.7 32 356-399 5-36 (292)
189 TIGR03366 HpnZ_proposed putati 78.3 21 0.00045 36.4 10.7 45 342-398 109-153 (280)
190 TIGR03140 AhpF alkyl hydropero 78.2 2.5 5.3E-05 47.5 4.4 74 299-376 148-233 (515)
191 TIGR02279 PaaC-3OHAcCoADH 3-hy 77.8 22 0.00048 40.5 11.7 36 510-545 186-221 (503)
192 PRK07574 formate dehydrogenase 77.8 14 0.0003 40.9 9.8 142 350-524 187-335 (385)
193 PRK15317 alkyl hydroperoxide r 77.5 2.6 5.6E-05 47.3 4.3 84 300-399 148-243 (517)
194 PRK14182 bifunctional 5,10-met 77.4 12 0.00026 39.8 9.0 82 336-455 138-220 (282)
195 PRK02842 light-independent pro 77.3 9.7 0.00021 42.1 8.6 115 314-443 248-368 (427)
196 cd05292 LDH_2 A subgroup of L- 77.3 8.1 0.00018 40.8 7.7 126 357-499 2-144 (308)
197 PRK08410 2-hydroxyacid dehydro 77.2 20 0.00044 38.1 10.7 106 351-492 141-252 (311)
198 PRK14180 bifunctional 5,10-met 76.9 12 0.00026 39.9 8.7 83 335-455 138-221 (282)
199 PRK06476 pyrroline-5-carboxyla 76.9 36 0.00078 34.6 11.9 95 357-473 2-96 (258)
200 PRK14169 bifunctional 5,10-met 76.5 13 0.00029 39.5 9.0 83 335-455 136-219 (282)
201 PRK14167 bifunctional 5,10-met 76.5 13 0.00028 39.9 8.9 86 336-455 138-224 (297)
202 PRK14181 bifunctional 5,10-met 76.2 15 0.00032 39.4 9.1 86 336-455 134-220 (287)
203 PLN03139 formate dehydrogenase 76.2 20 0.00044 39.6 10.6 143 349-524 193-342 (386)
204 PRK05808 3-hydroxybutyryl-CoA 75.8 20 0.00044 36.9 9.9 32 356-399 4-35 (282)
205 PRK15409 bifunctional glyoxyla 75.7 15 0.00032 39.5 9.1 141 350-525 140-288 (323)
206 PRK12439 NAD(P)H-dependent gly 75.4 4.7 0.0001 43.1 5.3 103 355-473 7-114 (341)
207 PRK14173 bifunctional 5,10-met 75.2 14 0.00031 39.4 8.8 82 336-455 136-218 (287)
208 PRK08268 3-hydroxy-acyl-CoA de 75.2 9.5 0.00021 43.4 8.0 97 434-544 112-222 (507)
209 PRK15469 ghrA bifunctional gly 75.1 21 0.00046 38.1 10.1 160 350-551 131-297 (312)
210 PLN02602 lactate dehydrogenase 75.0 12 0.00027 40.7 8.5 123 356-497 38-180 (350)
211 PF00070 Pyr_redox: Pyridine n 74.7 6.1 0.00013 33.0 4.8 35 357-403 1-35 (80)
212 PLN02616 tetrahydrofolate dehy 74.6 14 0.0003 40.8 8.6 81 337-455 213-294 (364)
213 cd01491 Ube1_repeat1 Ubiquitin 74.3 3 6.5E-05 44.2 3.5 38 351-399 15-52 (286)
214 PRK07231 fabG 3-ketoacyl-(acyl 74.3 9 0.0002 37.3 6.6 36 352-399 2-38 (251)
215 cd05294 LDH-like_MDH_nadp A la 74.3 15 0.00033 39.0 8.7 99 357-473 2-124 (309)
216 COG0039 Mdh Malate/lactate deh 74.3 9 0.00019 41.4 7.1 109 356-486 1-126 (313)
217 PRK12490 6-phosphogluconate de 73.7 9.3 0.0002 40.0 6.9 94 357-473 2-97 (299)
218 KOG2337 Ubiquitin activating E 73.7 2.9 6.3E-05 47.9 3.4 165 353-530 338-522 (669)
219 PF01113 DapB_N: Dihydrodipico 73.5 7.3 0.00016 35.7 5.4 95 357-468 2-97 (124)
220 PRK06487 glycerate dehydrogena 73.4 73 0.0016 34.0 13.6 157 351-551 144-308 (317)
221 TIGR02622 CDP_4_6_dhtase CDP-g 73.4 12 0.00025 39.4 7.6 106 353-470 2-127 (349)
222 PRK12861 malic enzyme; Reviewe 73.2 2.6 5.7E-05 50.3 3.0 88 269-389 81-190 (764)
223 PRK14186 bifunctional 5,10-met 73.2 18 0.00039 38.9 8.9 82 336-455 139-221 (297)
224 PRK04690 murD UDP-N-acetylmura 72.9 13 0.00029 41.5 8.3 92 353-466 6-97 (468)
225 PRK13581 D-3-phosphoglycerate 72.9 55 0.0012 37.4 13.3 168 349-554 134-305 (526)
226 PRK07340 ornithine cyclodeamin 72.8 28 0.0006 36.9 10.2 105 353-483 123-231 (304)
227 cd01484 E1-2_like Ubiquitin ac 72.7 4.8 0.0001 41.4 4.5 32 357-399 1-32 (234)
228 TIGR02371 ala_DH_arch alanine 72.5 24 0.00053 37.7 9.8 105 354-483 127-236 (325)
229 cd01486 Apg7 Apg7 is an E1-lik 72.3 4.9 0.00011 43.3 4.5 32 357-399 1-32 (307)
230 PRK06153 hypothetical protein; 71.8 3.5 7.5E-05 45.7 3.4 101 351-473 172-278 (393)
231 PF13738 Pyr_redox_3: Pyridine 71.7 4.4 9.6E-05 38.5 3.7 30 359-399 1-30 (203)
232 PF01494 FAD_binding_3: FAD bi 71.7 5.2 0.00011 40.5 4.4 34 356-401 2-35 (356)
233 PRK00421 murC UDP-N-acetylmura 71.7 11 0.00025 41.6 7.3 113 354-509 6-120 (461)
234 COG0476 ThiF Dinucleotide-util 71.6 5.7 0.00012 40.4 4.7 85 350-454 25-114 (254)
235 PRK06270 homoserine dehydrogen 71.6 29 0.00063 37.3 10.2 106 356-467 3-123 (341)
236 COG0499 SAM1 S-adenosylhomocys 71.5 25 0.00055 39.1 9.7 121 332-487 189-315 (420)
237 TIGR01327 PGDH D-3-phosphoglyc 71.3 1.1E+02 0.0024 35.0 15.3 168 349-553 132-303 (525)
238 PRK08229 2-dehydropantoate 2-r 71.3 8.8 0.00019 40.3 6.2 103 356-475 3-112 (341)
239 PRK07877 hypothetical protein; 71.1 9.2 0.0002 45.6 6.8 101 351-470 103-229 (722)
240 COG0190 FolD 5,10-methylene-te 71.1 18 0.0004 38.6 8.4 84 334-455 135-219 (283)
241 PLN02819 lysine-ketoglutarate 70.8 21 0.00045 44.4 9.8 25 353-377 201-225 (1042)
242 PRK09880 L-idonate 5-dehydroge 70.8 73 0.0016 33.4 12.8 44 343-398 159-202 (343)
243 PRK09754 phenylpropionate diox 70.8 6.2 0.00013 42.5 5.0 36 354-399 2-37 (396)
244 PRK14620 NAD(P)H-dependent gly 70.2 12 0.00026 39.3 6.8 31 357-399 2-32 (326)
245 PLN02520 bifunctional 3-dehydr 70.1 9.4 0.0002 43.6 6.4 48 340-399 354-411 (529)
246 PLN02897 tetrahydrofolate dehy 69.9 20 0.00043 39.4 8.5 82 336-455 195-277 (345)
247 TIGR01771 L-LDH-NAD L-lactate 69.9 11 0.00023 40.0 6.4 123 360-497 1-139 (299)
248 KOG1495 Lactate dehydrogenase 69.8 16 0.00034 39.4 7.5 130 351-503 16-169 (332)
249 cd01488 Uba3_RUB Ubiquitin act 69.8 5.9 0.00013 42.2 4.4 32 357-399 1-32 (291)
250 KOG0069 Glyoxylate/hydroxypyru 69.7 20 0.00044 39.2 8.5 101 332-458 119-244 (336)
251 PF02737 3HCDH_N: 3-hydroxyacy 68.7 7.3 0.00016 38.1 4.5 97 357-468 1-111 (180)
252 PRK06932 glycerate dehydrogena 68.0 23 0.00051 37.7 8.5 138 350-524 142-288 (314)
253 PRK06407 ornithine cyclodeamin 67.7 15 0.00033 38.9 7.0 105 354-483 116-226 (301)
254 PLN00112 malate dehydrogenase 67.4 20 0.00044 40.4 8.2 132 356-497 101-252 (444)
255 cd01489 Uba2_SUMO Ubiquitin ac 67.4 7.6 0.00017 41.7 4.7 32 357-399 1-32 (312)
256 PTZ00142 6-phosphogluconate de 67.3 11 0.00025 42.5 6.3 97 357-473 3-104 (470)
257 TIGR00873 gnd 6-phosphoglucona 67.2 15 0.00033 41.4 7.3 95 357-471 1-99 (467)
258 PRK06928 pyrroline-5-carboxyla 66.8 24 0.00052 36.6 8.1 98 356-473 2-101 (277)
259 PRK11790 D-3-phosphoglycerate 66.6 1.1E+02 0.0023 34.2 13.4 163 350-553 146-318 (409)
260 PRK06823 ornithine cyclodeamin 66.1 42 0.00091 36.0 10.0 106 354-484 127-237 (315)
261 PRK13938 phosphoheptose isomer 66.1 18 0.0004 36.2 6.9 104 354-472 44-150 (196)
262 cd01490 Ube1_repeat2 Ubiquitin 66.0 11 0.00023 42.5 5.7 37 357-399 1-37 (435)
263 TIGR01292 TRX_reduct thioredox 65.9 7.2 0.00016 39.0 4.0 31 357-399 2-32 (300)
264 COG1179 Dinucleotide-utilizing 65.9 5.4 0.00012 42.0 3.1 42 352-404 27-68 (263)
265 PRK07502 cyclohexadienyl dehyd 65.7 32 0.0007 35.9 8.9 94 356-471 7-101 (307)
266 TIGR01214 rmlD dTDP-4-dehydror 65.7 29 0.00062 34.9 8.2 60 357-446 1-61 (287)
267 cd00300 LDH_like L-lactate deh 65.6 19 0.0004 38.0 7.1 123 358-497 1-141 (300)
268 PF13580 SIS_2: SIS domain; PD 65.5 34 0.00073 31.9 8.1 123 310-458 2-124 (138)
269 PRK15181 Vi polysaccharide bio 65.5 28 0.00061 36.7 8.5 105 349-470 9-141 (348)
270 TIGR03376 glycerol3P_DH glycer 65.4 12 0.00026 40.6 5.8 20 357-376 1-20 (342)
271 PRK00536 speE spermidine synth 65.3 11 0.00024 39.6 5.3 101 356-499 74-175 (262)
272 PLN02688 pyrroline-5-carboxyla 64.7 18 0.00039 36.7 6.6 103 357-487 2-107 (266)
273 PF05834 Lycopene_cycl: Lycope 64.4 8.5 0.00019 41.4 4.5 35 358-402 2-36 (374)
274 PRK12409 D-amino acid dehydrog 64.2 8.6 0.00019 41.2 4.4 33 356-400 2-34 (410)
275 PRK06046 alanine dehydrogenase 64.1 45 0.00098 35.6 9.8 104 354-483 128-237 (326)
276 PRK12429 3-hydroxybutyrate deh 63.8 17 0.00037 35.5 6.1 35 353-399 2-37 (258)
277 PF03447 NAD_binding_3: Homose 63.5 13 0.00028 33.2 4.8 88 362-467 1-88 (117)
278 cd01974 Nitrogenase_MoFe_beta 63.5 13 0.00028 41.1 5.8 128 314-473 264-405 (435)
279 PF03446 NAD_binding_2: NAD bi 63.3 4.7 0.0001 38.3 2.0 104 356-486 2-108 (163)
280 cd08237 ribitol-5-phosphate_DH 63.0 1.8E+02 0.0038 30.7 13.8 35 354-398 163-197 (341)
281 PRK08618 ornithine cyclodeamin 63.0 20 0.00044 38.1 6.9 102 354-481 126-233 (325)
282 PRK06719 precorrin-2 dehydroge 62.9 11 0.00024 36.2 4.5 36 352-399 10-45 (157)
283 COG0240 GpsA Glycerol-3-phosph 62.9 14 0.0003 40.3 5.6 95 356-470 2-105 (329)
284 PRK11883 protoporphyrinogen ox 62.7 5 0.00011 43.0 2.4 22 356-377 1-22 (451)
285 PRK06718 precorrin-2 dehydroge 62.6 11 0.00024 37.7 4.6 35 352-398 7-41 (202)
286 TIGR02028 ChlP geranylgeranyl 62.1 8.8 0.00019 41.7 4.1 31 357-399 2-32 (398)
287 PRK03803 murD UDP-N-acetylmura 61.6 38 0.00082 37.2 8.9 115 354-509 5-121 (448)
288 TIGR03169 Nterm_to_SelD pyridi 61.6 5.6 0.00012 41.9 2.4 36 357-401 1-36 (364)
289 TIGR02023 BchP-ChlP geranylger 61.4 9.5 0.00021 40.9 4.1 31 357-399 2-32 (388)
290 PRK03369 murD UDP-N-acetylmura 61.3 38 0.00082 38.1 8.9 89 353-466 10-98 (488)
291 COG1250 FadB 3-hydroxyacyl-CoA 61.1 2.3E+02 0.0049 30.8 14.3 139 428-585 102-249 (307)
292 PF02645 DegV: Uncharacterised 60.5 31 0.00068 35.8 7.6 128 235-389 1-143 (280)
293 PRK13512 coenzyme A disulfide 60.2 8.4 0.00018 42.3 3.6 33 357-399 3-35 (438)
294 PRK09564 coenzyme A disulfide 60.1 12 0.00026 40.7 4.6 37 356-402 1-37 (444)
295 TIGR01470 cysG_Nterm siroheme 59.9 13 0.00028 37.3 4.5 36 352-399 6-41 (205)
296 PF01266 DAO: FAD dependent ox 59.9 14 0.0003 37.5 4.8 33 357-401 1-33 (358)
297 PF02423 OCD_Mu_crystall: Orni 59.7 23 0.00049 37.7 6.6 103 355-482 128-237 (313)
298 PF13454 NAD_binding_9: FAD-NA 59.7 9.8 0.00021 35.9 3.5 36 359-401 1-36 (156)
299 TIGR00762 DegV EDD domain prot 59.3 30 0.00066 35.9 7.3 110 271-389 20-141 (275)
300 PRK12828 short chain dehydroge 59.2 22 0.00048 34.1 5.9 36 352-399 4-40 (239)
301 PRK06847 hypothetical protein; 58.7 13 0.00027 39.1 4.4 22 355-376 4-25 (375)
302 CHL00076 chlB photochlorophyll 58.7 34 0.00074 39.1 8.1 80 350-443 300-382 (513)
303 PRK06184 hypothetical protein; 58.7 12 0.00027 41.6 4.6 34 354-399 2-35 (502)
304 PRK05866 short chain dehydroge 58.6 39 0.00085 34.9 8.0 38 350-399 35-73 (293)
305 PRK01368 murD UDP-N-acetylmura 58.1 42 0.0009 37.6 8.5 112 354-509 5-117 (454)
306 PRK05749 3-deoxy-D-manno-octul 58.0 33 0.0007 37.0 7.5 37 426-467 312-349 (425)
307 PRK04176 ribulose-1,5-biphosph 57.7 13 0.00028 38.4 4.2 35 354-400 24-58 (257)
308 PRK07233 hypothetical protein; 57.7 11 0.00024 40.0 3.9 31 357-399 1-31 (434)
309 TIGR01181 dTDP_gluc_dehyt dTDP 57.7 49 0.0011 33.2 8.3 78 357-446 1-84 (317)
310 COG1052 LdhA Lactate dehydroge 57.6 64 0.0014 34.9 9.5 91 348-468 139-234 (324)
311 PRK07236 hypothetical protein; 57.5 15 0.00032 39.2 4.8 24 353-376 4-27 (386)
312 PRK14852 hypothetical protein; 57.4 13 0.00028 45.8 4.7 38 351-399 328-365 (989)
313 KOG2250 Glutamate/leucine/phen 57.4 2E+02 0.0044 33.3 13.5 131 334-485 228-379 (514)
314 PRK08163 salicylate hydroxylas 57.1 13 0.00029 39.3 4.3 22 355-376 4-25 (396)
315 PF03435 Saccharop_dh: Sacchar 56.8 6.7 0.00014 42.1 2.0 88 358-467 1-96 (386)
316 PRK05993 short chain dehydroge 56.5 33 0.00071 34.7 6.8 32 356-399 5-37 (277)
317 PRK04965 NADH:flavorubredoxin 56.4 11 0.00024 40.2 3.5 35 356-400 3-37 (377)
318 PLN02240 UDP-glucose 4-epimera 56.4 31 0.00067 35.8 6.8 107 352-470 2-132 (352)
319 PRK07364 2-octaprenyl-6-methox 56.4 13 0.00027 39.8 4.0 33 355-399 18-50 (415)
320 TIGR01082 murC UDP-N-acetylmur 56.0 44 0.00096 36.9 8.2 110 357-509 1-112 (448)
321 PLN02172 flavin-containing mon 55.9 16 0.00036 40.9 5.0 25 352-376 7-31 (461)
322 PRK12829 short chain dehydroge 55.6 50 0.0011 32.5 7.8 36 352-399 8-44 (264)
323 TIGR00465 ilvC ketol-acid redu 55.3 43 0.00093 36.0 7.7 24 353-376 1-24 (314)
324 PRK13394 3-hydroxybutyrate deh 55.2 42 0.00092 32.9 7.2 76 352-446 4-95 (262)
325 PRK09126 hypothetical protein; 55.1 15 0.00032 38.9 4.3 22 355-376 3-24 (392)
326 PRK12771 putative glutamate sy 55.0 23 0.0005 40.3 6.1 36 352-399 134-169 (564)
327 PRK06475 salicylate hydroxylas 54.8 14 0.0003 39.7 4.0 21 356-376 3-23 (400)
328 TIGR01316 gltA glutamate synth 54.8 17 0.00038 40.2 4.9 37 351-399 129-165 (449)
329 TIGR01790 carotene-cycl lycope 54.4 15 0.00032 39.0 4.1 31 358-400 2-32 (388)
330 PRK06249 2-dehydropantoate 2-r 54.3 41 0.00088 35.4 7.3 103 354-474 4-110 (313)
331 KOG2304 3-hydroxyacyl-CoA dehy 54.3 12 0.00025 39.5 3.1 32 356-399 12-43 (298)
332 TIGR01278 DPOR_BchB light-inde 54.1 31 0.00068 39.2 6.9 76 352-443 292-372 (511)
333 COG0644 FixC Dehydrogenases (f 53.9 16 0.00036 39.4 4.5 35 356-402 4-38 (396)
334 PRK11199 tyrA bifunctional cho 53.7 69 0.0015 35.0 9.1 34 354-399 97-131 (374)
335 cd01493 APPBP1_RUB Ubiquitin a 53.7 15 0.00032 41.2 4.1 38 351-399 16-53 (425)
336 PTZ00431 pyrroline carboxylate 53.3 51 0.0011 33.9 7.7 38 354-399 2-39 (260)
337 PF13450 NAD_binding_8: NAD(P) 53.3 20 0.00042 29.7 3.8 31 360-402 1-31 (68)
338 TIGR01285 nifN nitrogenase mol 53.2 38 0.00083 37.7 7.2 109 314-444 272-382 (432)
339 PTZ00245 ubiquitin activating 53.0 13 0.00029 39.5 3.4 73 351-441 22-98 (287)
340 PF06690 DUF1188: Protein of u 52.9 18 0.00039 38.0 4.3 144 350-548 39-187 (252)
341 PRK12810 gltD glutamate syntha 52.9 19 0.0004 40.1 4.8 35 353-399 141-175 (471)
342 PRK06841 short chain dehydroge 52.8 34 0.00074 33.6 6.1 36 352-399 12-48 (255)
343 PTZ00318 NADH dehydrogenase-li 52.7 12 0.00026 41.0 3.2 36 352-399 7-42 (424)
344 cd05007 SIS_Etherase N-acetylm 52.6 30 0.00066 35.9 5.9 37 435-473 118-156 (257)
345 PRK05732 2-octaprenyl-6-methox 52.5 20 0.00044 37.8 4.7 36 355-399 3-38 (395)
346 PRK12769 putative oxidoreducta 52.4 18 0.00039 42.1 4.7 34 354-399 326-359 (654)
347 PRK07251 pyridine nucleotide-d 52.4 18 0.0004 39.4 4.6 34 355-400 3-36 (438)
348 PLN02268 probable polyamine ox 52.2 6.9 0.00015 42.4 1.2 20 357-376 2-21 (435)
349 TIGR02032 GG-red-SF geranylger 51.9 18 0.00039 35.9 4.1 32 357-400 2-33 (295)
350 PRK07067 sorbitol dehydrogenas 51.9 21 0.00045 35.4 4.5 79 352-446 3-91 (257)
351 PLN02695 GDP-D-mannose-3',5'-e 51.8 53 0.0011 35.3 7.8 97 354-470 20-137 (370)
352 PRK04663 murD UDP-N-acetylmura 51.6 70 0.0015 35.3 8.9 117 353-509 4-121 (438)
353 KOG2018 Predicted dinucleotide 51.6 18 0.00038 39.7 4.1 40 351-401 70-109 (430)
354 PRK07045 putative monooxygenas 51.5 18 0.0004 38.4 4.3 21 356-376 6-26 (388)
355 TIGR03026 NDP-sugDHase nucleot 51.4 59 0.0013 35.6 8.3 31 357-399 2-32 (411)
356 PRK06416 dihydrolipoamide dehy 51.4 17 0.00037 39.8 4.2 33 356-400 5-37 (462)
357 COG3288 PntA NAD/NADP transhyd 51.4 53 0.0012 36.0 7.6 51 426-481 237-293 (356)
358 PRK06138 short chain dehydroge 51.4 38 0.00082 33.0 6.2 76 352-446 2-92 (252)
359 PRK07608 ubiquinone biosynthes 51.3 17 0.00038 38.3 4.0 32 356-399 6-37 (388)
360 PLN00093 geranylgeranyl diphos 51.3 17 0.00037 40.5 4.2 21 356-376 40-60 (450)
361 PRK07523 gluconate 5-dehydroge 51.2 50 0.0011 32.6 7.1 36 352-399 7-43 (255)
362 PRK06753 hypothetical protein; 51.2 18 0.00039 38.0 4.2 20 357-376 2-21 (373)
363 PRK11259 solA N-methyltryptoph 51.2 20 0.00043 37.6 4.4 34 355-400 3-36 (376)
364 PRK08219 short chain dehydroge 51.0 68 0.0015 30.7 7.7 71 356-446 4-82 (227)
365 PRK07232 bifunctional malic en 50.9 11 0.00024 45.1 2.8 92 268-396 76-191 (752)
366 PF01408 GFO_IDH_MocA: Oxidore 50.8 29 0.00062 30.4 4.7 90 357-467 2-91 (120)
367 PLN02676 polyamine oxidase 50.7 40 0.00086 38.0 6.9 23 354-376 25-47 (487)
368 PRK07589 ornithine cyclodeamin 50.7 1.7E+02 0.0038 32.0 11.6 105 354-483 128-239 (346)
369 TIGR01377 soxA_mon sarcosine o 50.6 20 0.00042 37.7 4.3 33 357-401 2-34 (380)
370 cd05006 SIS_GmhA Phosphoheptos 50.4 88 0.0019 30.0 8.4 22 435-458 101-122 (177)
371 PRK09987 dTDP-4-dehydrorhamnos 50.4 66 0.0014 33.3 8.0 86 357-470 2-104 (299)
372 COG2072 TrkA Predicted flavopr 50.3 21 0.00046 39.7 4.7 46 489-534 134-187 (443)
373 TIGR01505 tartro_sem_red 2-hyd 50.2 52 0.0011 34.0 7.2 31 357-399 1-31 (291)
374 COG2423 Predicted ornithine cy 50.2 99 0.0021 33.8 9.5 119 340-485 117-241 (330)
375 COG0654 UbiH 2-polyprenyl-6-me 50.1 21 0.00045 38.4 4.5 33 355-399 2-34 (387)
376 TIGR01373 soxB sarcosine oxida 50.1 25 0.00054 37.6 5.1 38 354-401 29-66 (407)
377 PRK12266 glpD glycerol-3-phosp 49.9 19 0.00041 40.6 4.3 33 356-400 7-39 (508)
378 PRK04346 tryptophan synthase s 49.9 2.4E+02 0.0052 31.5 12.7 124 428-567 213-354 (397)
379 PRK12779 putative bifunctional 49.8 23 0.00049 43.5 5.2 40 353-404 304-347 (944)
380 TIGR00031 UDP-GALP_mutase UDP- 49.5 21 0.00046 39.3 4.4 31 357-399 3-33 (377)
381 PF01946 Thi4: Thi4 family; PD 49.3 25 0.00054 36.7 4.6 35 355-401 17-51 (230)
382 PRK08773 2-octaprenyl-3-methyl 49.2 19 0.00042 38.3 4.0 34 355-400 6-39 (392)
383 TIGR03088 stp2 sugar transfera 49.1 1.2E+02 0.0027 31.5 9.9 36 427-467 266-301 (374)
384 TIGR00292 thiazole biosynthesi 49.0 21 0.00045 36.9 4.1 37 354-402 20-56 (254)
385 COG0771 MurD UDP-N-acetylmuram 48.9 1E+02 0.0022 35.1 9.7 117 352-509 4-123 (448)
386 PRK10157 putative oxidoreducta 48.7 20 0.00043 39.4 4.1 21 356-376 6-26 (428)
387 PRK07819 3-hydroxybutyryl-CoA 48.6 23 0.00049 37.1 4.3 32 356-399 6-37 (286)
388 TIGR01179 galE UDP-glucose-4-e 48.6 81 0.0017 31.8 8.2 97 357-468 1-119 (328)
389 PRK05441 murQ N-acetylmuramic 48.5 29 0.00063 36.9 5.2 38 435-474 131-170 (299)
390 TIGR01279 DPOR_bchN light-inde 48.5 59 0.0013 35.8 7.7 85 343-443 262-351 (407)
391 PRK10892 D-arabinose 5-phospha 48.5 3.5E+02 0.0076 28.4 13.5 84 355-473 47-132 (326)
392 PRK00048 dihydrodipicolinate r 48.2 1.1E+02 0.0024 31.5 9.2 88 356-468 2-90 (257)
393 PRK06392 homoserine dehydrogen 48.1 66 0.0014 34.8 7.8 82 357-444 2-90 (326)
394 TIGR01286 nifK nitrogenase mol 48.0 28 0.00062 39.8 5.3 58 314-376 324-384 (515)
395 PRK00683 murD UDP-N-acetylmura 47.9 90 0.002 34.2 9.0 113 355-509 3-115 (418)
396 TIGR01408 Ube1 ubiquitin-activ 47.9 23 0.0005 43.8 4.9 43 351-399 415-457 (1008)
397 PLN02427 UDP-apiose/xylose syn 47.9 64 0.0014 34.4 7.7 83 346-445 5-96 (386)
398 PRK09186 flagellin modificatio 47.9 26 0.00056 34.4 4.4 35 353-399 2-37 (256)
399 TIGR00441 gmhA phosphoheptose 47.8 1.1E+02 0.0024 29.0 8.5 37 435-473 79-117 (154)
400 PRK11728 hydroxyglutarate oxid 47.7 21 0.00046 38.2 4.1 34 356-399 3-36 (393)
401 PLN02463 lycopene beta cyclase 47.7 21 0.00046 39.9 4.2 32 356-399 29-60 (447)
402 TIGR01984 UbiH 2-polyprenyl-6- 47.5 19 0.00042 37.9 3.7 20 358-377 2-21 (382)
403 PRK11749 dihydropyrimidine deh 47.5 25 0.00055 38.7 4.7 35 353-399 138-172 (457)
404 PRK12491 pyrroline-5-carboxyla 47.2 45 0.00097 34.8 6.2 35 356-398 3-37 (272)
405 PRK06182 short chain dehydroge 47.2 56 0.0012 32.7 6.8 74 354-446 2-85 (273)
406 PRK07588 hypothetical protein; 47.2 23 0.0005 37.7 4.2 21 356-376 1-21 (391)
407 PRK08020 ubiF 2-octaprenyl-3-m 47.1 21 0.00046 37.8 4.0 33 355-399 5-37 (391)
408 PRK01747 mnmC bifunctional tRN 47.0 24 0.00052 41.0 4.6 33 356-400 261-293 (662)
409 cd01971 Nitrogenase_VnfN_like 47.0 58 0.0013 36.1 7.4 62 314-378 247-316 (427)
410 PF13241 NAD_binding_7: Putati 46.9 16 0.00035 32.3 2.6 37 352-400 4-40 (103)
411 PRK12770 putative glutamate sy 46.9 30 0.00065 36.7 5.0 35 353-399 16-50 (352)
412 PRK06185 hypothetical protein; 46.8 23 0.0005 37.8 4.2 34 355-400 6-39 (407)
413 TIGR01988 Ubi-OHases Ubiquinon 46.8 22 0.00047 37.2 3.9 31 358-400 2-32 (385)
414 PRK08013 oxidoreductase; Provi 46.8 25 0.00054 37.9 4.4 33 355-399 3-35 (400)
415 PRK08849 2-octaprenyl-3-methyl 46.7 26 0.00056 37.4 4.5 32 356-399 4-35 (384)
416 TIGR03736 PRTRC_ThiF PRTRC sys 46.7 31 0.00066 36.0 4.9 46 354-400 10-55 (244)
417 TIGR03589 PseB UDP-N-acetylglu 46.7 59 0.0013 34.1 7.1 106 353-470 2-125 (324)
418 cd01965 Nitrogenase_MoFe_beta_ 46.6 50 0.0011 36.4 6.8 99 351-473 295-399 (428)
419 PRK13937 phosphoheptose isomer 46.6 70 0.0015 31.4 7.1 22 435-458 106-127 (188)
420 PRK08294 phenol 2-monooxygenas 46.5 22 0.00047 41.5 4.2 35 354-399 31-65 (634)
421 TIGR01789 lycopene_cycl lycope 46.5 29 0.00063 37.5 4.9 35 358-402 2-36 (370)
422 PRK08244 hypothetical protein; 46.4 24 0.00051 39.2 4.3 21 356-376 3-23 (493)
423 cd04951 GT1_WbdM_like This fam 46.3 1.8E+02 0.004 29.3 10.3 36 427-467 256-291 (360)
424 PRK00711 D-amino acid dehydrog 46.2 25 0.00054 37.6 4.3 31 357-399 2-32 (416)
425 PRK12778 putative bifunctional 46.2 29 0.00063 41.1 5.2 36 352-399 428-463 (752)
426 TIGR02053 MerA mercuric reduct 46.0 24 0.00052 38.8 4.3 30 358-399 3-32 (463)
427 PRK08010 pyridine nucleotide-d 45.9 23 0.0005 38.7 4.1 32 356-399 4-35 (441)
428 PRK06912 acoL dihydrolipoamide 45.9 23 0.00051 39.0 4.2 31 357-399 2-32 (458)
429 PRK05714 2-octaprenyl-3-methyl 45.8 21 0.00045 38.3 3.6 32 356-399 3-34 (405)
430 PRK14694 putative mercuric red 45.7 28 0.0006 38.6 4.7 34 354-399 5-38 (468)
431 PRK12831 putative oxidoreducta 45.7 27 0.00059 39.0 4.6 35 353-399 138-172 (464)
432 PLN02527 aspartate carbamoyltr 45.7 2.7E+02 0.0058 30.0 11.8 77 352-445 148-228 (306)
433 COG1252 Ndh NADH dehydrogenase 45.6 21 0.00045 39.9 3.6 35 355-399 3-37 (405)
434 PRK05976 dihydrolipoamide dehy 45.6 27 0.00058 38.7 4.5 33 355-399 4-36 (472)
435 PRK12570 N-acetylmuramic acid- 45.6 79 0.0017 33.7 7.8 37 435-473 127-165 (296)
436 TIGR00274 N-acetylmuramic acid 45.6 36 0.00079 36.2 5.3 38 435-474 126-165 (291)
437 PRK10262 thioredoxin reductase 45.6 20 0.00042 37.3 3.3 24 353-376 4-27 (321)
438 TIGR03364 HpnW_proposed FAD de 45.5 25 0.00055 36.9 4.1 31 357-399 2-32 (365)
439 PRK07478 short chain dehydroge 45.3 66 0.0014 31.7 6.8 36 352-399 3-39 (254)
440 TIGR01350 lipoamide_DH dihydro 45.2 26 0.00056 38.4 4.3 30 357-398 3-32 (461)
441 PRK11101 glpA sn-glycerol-3-ph 45.2 26 0.00056 40.0 4.4 33 355-399 6-38 (546)
442 PF13738 Pyr_redox_3: Pyridine 45.1 23 0.0005 33.6 3.5 36 352-399 164-199 (203)
443 COG4017 Uncharacterized protei 45.1 47 0.001 34.3 5.7 149 350-550 40-190 (254)
444 COG0677 WecC UDP-N-acetyl-D-ma 45.0 2.1E+02 0.0046 32.5 11.1 136 294-471 273-421 (436)
445 PRK14806 bifunctional cyclohex 44.8 52 0.0011 38.7 7.0 93 356-470 4-97 (735)
446 PRK09853 putative selenate red 44.7 27 0.00059 43.3 4.8 35 353-399 537-571 (1019)
447 PRK11445 putative oxidoreducta 44.6 25 0.00055 37.2 4.0 20 357-376 3-22 (351)
448 PRK13369 glycerol-3-phosphate 44.6 26 0.00056 39.4 4.3 32 356-399 7-38 (502)
449 PRK08243 4-hydroxybenzoate 3-m 44.6 28 0.0006 37.3 4.4 22 355-376 2-23 (392)
450 PRK13301 putative L-aspartate 44.5 41 0.00089 35.7 5.4 117 356-496 3-122 (267)
451 PRK12814 putative NADPH-depend 44.4 27 0.00059 40.8 4.6 34 354-399 192-225 (652)
452 PRK07774 short chain dehydroge 44.0 45 0.00097 32.6 5.4 36 352-399 3-39 (250)
453 COG5322 Predicted dehydrogenas 44.0 34 0.00073 37.0 4.7 45 332-376 144-189 (351)
454 PRK07538 hypothetical protein; 43.9 26 0.00057 37.8 4.1 20 357-376 2-21 (413)
455 TIGR02014 BchZ chlorophyllide 43.9 1.1E+02 0.0025 34.7 9.2 122 315-473 237-362 (468)
456 PRK06292 dihydrolipoamide dehy 43.9 31 0.00066 37.9 4.6 33 355-399 3-35 (460)
457 PLN02172 flavin-containing mon 43.8 29 0.00063 38.9 4.5 37 352-400 201-237 (461)
458 PRK07494 2-octaprenyl-6-methox 43.5 27 0.00059 37.0 4.0 34 355-400 7-40 (388)
459 cd00529 RuvC_resolvase Hollida 43.4 21 0.00046 34.1 3.0 61 307-368 41-118 (154)
460 COG1748 LYS9 Saccharopine dehy 43.4 44 0.00096 37.2 5.7 85 356-459 2-90 (389)
461 PLN02653 GDP-mannose 4,6-dehyd 43.4 1.1E+02 0.0023 32.0 8.4 82 352-445 3-93 (340)
462 PRK08850 2-octaprenyl-6-methox 43.3 31 0.00066 37.1 4.5 33 355-399 4-36 (405)
463 PRK11559 garR tartronate semia 43.2 89 0.0019 32.3 7.7 32 356-399 3-34 (296)
464 TIGR01408 Ube1 ubiquitin-activ 43.1 20 0.00044 44.3 3.4 39 351-400 20-58 (1008)
465 PRK06124 gluconate 5-dehydroge 43.1 90 0.002 30.7 7.4 39 350-399 6-44 (256)
466 PRK06171 sorbitol-6-phosphate 43.0 1.2E+02 0.0026 30.1 8.4 76 352-445 6-87 (266)
467 TIGR02918 accessory Sec system 43.0 1.5E+02 0.0032 33.8 9.9 36 427-467 386-421 (500)
468 PRK12862 malic enzyme; Reviewe 43.0 17 0.00036 43.7 2.6 92 268-396 84-199 (763)
469 PLN02545 3-hydroxybutyryl-CoA 42.8 34 0.00073 35.5 4.5 32 356-399 5-36 (295)
470 COG1086 Predicted nucleoside-d 42.8 41 0.0009 39.3 5.5 75 353-445 248-335 (588)
471 PRK07333 2-octaprenyl-6-methox 42.5 25 0.00054 37.3 3.6 20 357-376 3-22 (403)
472 TIGR03143 AhpF_homolog putativ 42.5 27 0.00059 39.8 4.1 32 357-400 6-37 (555)
473 PRK05868 hypothetical protein; 42.3 31 0.00067 37.0 4.3 21 356-376 2-22 (372)
474 COG3380 Predicted NAD/FAD-depe 42.3 28 0.00061 37.6 3.9 32 357-400 3-34 (331)
475 COG3349 Uncharacterized conser 42.3 18 0.0004 41.2 2.7 44 356-404 1-51 (485)
476 PF12831 FAD_oxidored: FAD dep 42.2 31 0.00067 37.9 4.4 33 358-402 2-34 (428)
477 PRK08265 short chain dehydroge 41.9 36 0.00078 34.0 4.5 37 352-399 3-39 (261)
478 PRK07890 short chain dehydroge 41.9 78 0.0017 31.0 6.8 36 353-399 3-38 (258)
479 PRK06834 hypothetical protein; 41.6 34 0.00073 38.5 4.6 35 354-400 2-36 (488)
480 KOG1370 S-adenosylhomocysteine 41.5 82 0.0018 34.7 7.1 119 347-493 206-338 (434)
481 PRK09466 metL bifunctional asp 41.5 74 0.0016 38.6 7.6 107 354-467 457-570 (810)
482 PRK10015 oxidoreductase; Provi 41.5 30 0.00065 38.1 4.1 33 356-400 6-38 (429)
483 PRK05249 soluble pyridine nucl 41.5 33 0.00071 37.6 4.4 34 355-400 5-38 (461)
484 TIGR01317 GOGAT_sm_gam glutama 41.4 35 0.00075 38.4 4.7 34 354-399 142-175 (485)
485 PRK00414 gmhA phosphoheptose i 41.4 1E+02 0.0022 30.5 7.5 104 353-471 42-147 (192)
486 TIGR03325 BphB_TodD cis-2,3-di 41.4 37 0.00081 33.8 4.5 36 352-399 2-38 (262)
487 PRK08220 2,3-dihydroxybenzoate 41.3 1.7E+02 0.0037 28.5 9.0 77 352-446 5-87 (252)
488 PLN02568 polyamine oxidase 41.2 18 0.00039 41.5 2.4 24 354-377 4-27 (539)
489 PRK08132 FAD-dependent oxidore 40.9 32 0.00069 38.9 4.3 22 355-376 23-44 (547)
490 TIGR03315 Se_ygfK putative sel 40.9 32 0.00069 42.7 4.5 34 354-399 536-569 (1012)
491 PF02558 ApbA: Ketopantoate re 40.8 46 0.00099 30.5 4.6 31 358-400 1-31 (151)
492 cd03813 GT1_like_3 This family 40.8 1.5E+02 0.0032 33.0 9.3 87 344-467 313-399 (475)
493 cd01976 Nitrogenase_MoFe_alpha 40.8 98 0.0021 34.4 8.0 87 342-444 287-378 (421)
494 COG0665 DadA Glycine/D-amino a 40.8 40 0.00087 35.3 4.8 37 354-402 3-39 (387)
495 PLN02657 3,8-divinyl protochlo 40.8 1.2E+02 0.0025 33.1 8.4 108 348-467 53-179 (390)
496 PRK06523 short chain dehydroge 40.7 1.1E+02 0.0024 30.2 7.6 37 351-399 5-42 (260)
497 TIGR02360 pbenz_hydroxyl 4-hyd 40.6 35 0.00075 36.8 4.4 32 356-399 3-34 (390)
498 PRK11730 fadB multifunctional 40.3 31 0.00068 40.9 4.3 106 429-543 413-526 (715)
499 COG0673 MviM Predicted dehydro 40.3 79 0.0017 32.7 6.8 94 355-467 3-102 (342)
500 PF03486 HI0933_like: HI0933-l 40.3 30 0.00066 38.4 3.9 31 357-399 2-32 (409)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.7e-202 Score=1602.54 Aligned_cols=532 Identities=62% Similarity=1.039 Sum_probs=518.6
Q ss_pred ccCCCcccCCCCCccc-ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhccCCchhH
Q 007156 82 VYGEDTATEDQPVTPW-SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQK 160 (615)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~K 160 (615)
.++++..+..+...+| ..+.++|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k 87 (582)
T KOG1257|consen 8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK 87 (582)
T ss_pred cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence 3444444434444555 667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHhhccCccccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEe
Q 007156 161 YMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVT 240 (615)
Q Consensus 161 y~~L~~L~~rNe~LFYrll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVT 240 (615)
|+||++||+|||+||||+|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||
T Consensus 88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT 167 (582)
T KOG1257|consen 88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT 167 (582)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccCCCCCCcccccchhhHHHHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCChhhHHHHHHHHHHH
Q 007156 241 DGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTA 320 (615)
Q Consensus 241 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~A 320 (615)
||||||||||||++|||||+||++|||+||||+|++|||||||||||||+||+||||+|+|++|++|++|++|+||||+|
T Consensus 168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A 247 (582)
T KOG1257|consen 168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA 247 (582)
T ss_pred CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCccccc----------------------------ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHH
Q 007156 321 VKQNYGERILI----------------------------QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAE 372 (615)
Q Consensus 321 v~~~~gp~vli----------------------------QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ 372 (615)
|.++|||+++| ||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+
T Consensus 248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~ 327 (582)
T KOG1257|consen 248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN 327 (582)
T ss_pred HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence 99999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHH
Q 007156 373 LIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKE 452 (615)
Q Consensus 373 ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ftee 452 (615)
||+.+|+++ |+|+|||+|||||||++|||+++|+.+++++|++|||++++.++|+|||+.||||||||+|++||+||||
T Consensus 328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee 406 (582)
T KOG1257|consen 328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE 406 (582)
T ss_pred HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence 999999985 9999999999999999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCC
Q 007156 453 VVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGA 532 (615)
Q Consensus 453 vv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a 532 (615)
|||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+||||+|+||||||+|+|||||||+++|++
T Consensus 407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~ 486 (582)
T KOG1257|consen 407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA 486 (582)
T ss_pred HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHccCCccCCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCC
Q 007156 533 IRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYR 612 (615)
Q Consensus 533 ~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~dl~~~i~~~m~~P~Y~ 612 (615)
++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+
T Consensus 487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~ 566 (582)
T KOG1257|consen 487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYR 566 (582)
T ss_pred ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 007156 613 TY 614 (615)
Q Consensus 613 ~~ 614 (615)
++
T Consensus 567 ~~ 568 (582)
T KOG1257|consen 567 NS 568 (582)
T ss_pred cc
Confidence 85
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.8e-193 Score=1560.61 Aligned_cols=512 Identities=50% Similarity=0.858 Sum_probs=501.6
Q ss_pred ccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhccCCchhHHHHHHHHHhhhhhhhHHhh
Q 007156 100 SVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLL 179 (615)
Q Consensus 100 ~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFYrll 179 (615)
+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+|
T Consensus 13 ~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll 92 (563)
T PRK13529 13 TPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLL 92 (563)
T ss_pred ecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCCCcccccc
Q 007156 180 IDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIP 259 (615)
Q Consensus 180 ~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~ 259 (615)
++|+||+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++|||||
T Consensus 93 ~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~ 172 (563)
T PRK13529 93 SDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIP 172 (563)
T ss_pred HhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc--------
Q 007156 260 VGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI-------- 331 (615)
Q Consensus 260 iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli-------- 331 (615)
|||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+++| |+++|
T Consensus 173 ~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~ 251 (563)
T PRK13529 173 IGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK 251 (563)
T ss_pred ccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred --------------------ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007156 332 --------------------QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 391 (615)
Q Consensus 332 --------------------QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk 391 (615)
||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++
T Consensus 252 ~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~ 330 (563)
T PRK13529 252 NARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARK 330 (563)
T ss_pred hHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcC
Confidence 9999999999999999999999999999999999999999999999987 5999999999
Q ss_pred eEEEEccCCccccCCccCccccchhhccccCCC---------CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCC
Q 007156 392 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---------KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNE 462 (615)
Q Consensus 392 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~e 462 (615)
+||+||++|||+++|.+ |+++|++|||+.++. .+|+|||+.+|||||||+|+++|+|||||||+|+++||
T Consensus 331 ~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~e 409 (563)
T PRK13529 331 RFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCE 409 (563)
T ss_pred eEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCC
Confidence 99999999999999965 999999999976543 68999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHH
Q 007156 463 KPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLA 542 (615)
Q Consensus 463 rPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~la 542 (615)
|||||||||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++
T Consensus 410 rPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~a 489 (563)
T PRK13529 410 RPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMA 489 (563)
T ss_pred CCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCccCCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007156 543 AAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 615 (615)
Q Consensus 543 AA~aLA~~v~~~~~~~g~l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~dl~~~i~~~m~~P~Y~~~~ 615 (615)
||++||++++++++.++.|||++++||+||.+||+||+++|+++|+|+. +.|+|+.+||+++||+|+|+||+
T Consensus 490 AA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 490 AAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 9999999999999999999999999999999999999999999999984 67889999999999999999974
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.2e-192 Score=1561.84 Aligned_cols=515 Identities=73% Similarity=1.188 Sum_probs=506.9
Q ss_pred cccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhccCCchhHHHHHHHHHhhhhhhhHHhhc
Q 007156 101 VASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYKLLI 180 (615)
Q Consensus 101 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFYrll~ 180 (615)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||+|||+||||+++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCCCcccccch
Q 007156 181 DNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMGIPV 260 (615)
Q Consensus 181 ~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 260 (615)
+|++||||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc---------
Q 007156 261 GKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI--------- 331 (615)
Q Consensus 261 GKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli--------- 331 (615)
||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+++|||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -------------------ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007156 332 -------------------QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 392 (615)
Q Consensus 332 -------------------QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~ 392 (615)
||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 9999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007156 393 IWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 472 (615)
Q Consensus 393 i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 472 (615)
||+||++|||+++|.++|+++|++||++.++.++|+|||+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCC
Q 007156 473 TSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVT 552 (615)
Q Consensus 473 ts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~ 552 (615)
|++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007156 553 QENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSPAYRTYR 615 (615)
Q Consensus 553 ~~~~~~g~l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~dl~~~i~~~m~~P~Y~~~~ 615 (615)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+|++++||+|+|++|+
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987777889999999999999999985
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.2e-190 Score=1540.87 Aligned_cols=511 Identities=49% Similarity=0.836 Sum_probs=497.4
Q ss_pred ccccccccccccCcCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHhhccCCchhHHHHHHHHHhhhhhhhHH
Q 007156 98 SVSVASGYSLLRDPHHNKGLAFSEKERNSHYLRGLLPPTVISQELQVKKMLHNIRQYQVPLQKYMAMMDLQERNQKLFYK 177 (615)
Q Consensus 98 ~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~rNe~LFYr 177 (615)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||+++++||+||+||++||+|||+||||
T Consensus 13 ~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 92 (559)
T PTZ00317 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYA 92 (559)
T ss_pred cccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCCCcccc
Q 007156 178 LLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHGMG 257 (615)
Q Consensus 178 ll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~Gmg 257 (615)
++++|+|||||||||||||+||++||++||+|||||+|++|||+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 93 ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 172 (559)
T PTZ00317 93 LLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMG 172 (559)
T ss_pred HHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc------
Q 007156 258 IPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI------ 331 (615)
Q Consensus 258 I~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli------ 331 (615)
|||||++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++|+||||+||+++| |+++|
T Consensus 173 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~ 251 (559)
T PTZ00317 173 ISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251 (559)
T ss_pred ccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 88887
Q ss_pred ----------------------ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007156 332 ----------------------QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 389 (615)
Q Consensus 332 ----------------------QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeA 389 (615)
||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 252 ~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA 330 (559)
T PTZ00317 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEA 330 (559)
T ss_pred CccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 9999999999999999999999999999999999999999999999987 59999999
Q ss_pred cCeEEEEccCCccccCCccCccccchhhcccc--CC---CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCc
Q 007156 390 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EP---VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKP 464 (615)
Q Consensus 390 rk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erP 464 (615)
++|||+||++|||+++|.++|+++|++|||+. .+ ..+|+|||+.+|||||||+|+++|+||||||++|+++|+||
T Consensus 331 ~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rP 410 (559)
T PTZ00317 331 LKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERP 410 (559)
T ss_pred cCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCC
Confidence 99999999999999999766999999999974 33 56999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHH
Q 007156 465 IIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 544 (615)
Q Consensus 465 IIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 544 (615)
|||||||||++|||||||||+||+|||||||||||+||+||||+++||||||+|||||||||+++++|++|||+||++||
T Consensus 411 IIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA 490 (559)
T PTZ00317 411 IIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490 (559)
T ss_pred EEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCccCCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCcccC
Q 007156 545 EALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATR--LPP-PKDLVKYAESCMYSPA 610 (615)
Q Consensus 545 ~aLA~~v~~~~~~~g~l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~--~~~-~~dl~~~i~~~m~~P~ 610 (615)
++||++++++++..|.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 491 ~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 99999999999999999999999999999999999999999999985 344 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.2e-110 Score=882.52 Aligned_cols=419 Identities=35% Similarity=0.519 Sum_probs=376.3
Q ss_pred cccHHHHHHHHHHHhhccCC-chhHHHHHHHHHhhhhhhhHHhhccCccccCCcccccchHHHHHHHhhhhcCCCccccc
Q 007156 137 VISQELQVKKMLHNIRQYQV-PLQKYMAMMDLQERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFIS 215 (615)
Q Consensus 137 v~t~e~Q~~R~~~~~~~~~~-~l~Ky~~L~~L~~rNe~LFYrll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis 215 (615)
++|+| |.+|.+.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++|++.+++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57889 99999999999877 99999999 899999999999999999999999999999999998888774
Q ss_pred cCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCC-CcccccchhhHHHHhhhcCCCCCceeeeeecCCCCcccccc-
Q 007156 216 LKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLG-CHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLD- 293 (615)
Q Consensus 216 ~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~- 293 (615)
.++.++++|||||||||||||||+| ..||||||||++|||+||||| +|||+||+||+|| +.+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e-i~~~ 134 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE-IIEF 134 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-HHHH
Confidence 3455666999999999999999999 569999999999999999999 9999999997766 432
Q ss_pred ----CcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc---ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChH
Q 007156 294 ----DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI---QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEA 366 (615)
Q Consensus 294 ----Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli---QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsA 366 (615)
-|.|.|++++++..++|+++. ..++++...+|++ ||||+|+||||+||||++|++|+|+||||+|||+|
T Consensus 135 Vkal~p~FgginLedi~ap~cf~ie----~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAA 210 (432)
T COG0281 135 VKALEPTFGGINLEDIDAPRCFAIE----ERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAA 210 (432)
T ss_pred HHHhhhcCCCcceeecccchhhHHH----HHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHH
Confidence 466699999999999999875 4477788777887 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCcc-Cccccchhhcc-ccCCCCCHHHHHhccCCcEEEEccC
Q 007156 367 GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLE-SLQHFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSG 444 (615)
Q Consensus 367 G~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~-~L~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~ 444 (615)
|+|||+||..+|++ .+|||+||++|+|+++|.+ .++++|..+|. +.....+ .+++ .+||||||+|+
T Consensus 211 giaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~--~~adv~iG~S~ 278 (432)
T COG0281 211 GIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLAL--AGADVLIGVSG 278 (432)
T ss_pred HHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccc--cCCCEEEEcCC
Confidence 99999999987543 3899999999999999965 36777777775 4444442 4444 46999999999
Q ss_pred CCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhh
Q 007156 445 QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLG 524 (615)
Q Consensus 445 ~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGig 524 (615)
+ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+|||| +++|||+||+|+|||||
T Consensus 279 ~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----------sd~PnQvNNvL~FPgIf 342 (432)
T COG0281 279 V-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----------SDYPNQVNNVLIFPGIF 342 (432)
T ss_pred C-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC----------CCCcccccceeEcchhh
Confidence 8 899999999997 459999999999 9999999999999999999997 56777999999999999
Q ss_pred HHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCc-hhHHHHHH
Q 007156 525 LGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPP-KDLVKYAE 603 (615)
Q Consensus 525 lG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~-~dl~~~i~ 603 (615)
+|+|++||++|||+|++|||+|||+++.++.. .+.|+|++++.|.++. ||.||+++|+++|+|+..+.. +++.++++
T Consensus 343 rGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~~~~~~~~~~~~~~ 420 (432)
T COG0281 343 RGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPIDDEEAYEQALE 420 (432)
T ss_pred hhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccCCCCCHHHHHHHHH
Confidence 99999999999999999999999999987665 7899999999999998 999999999999999975554 46999999
Q ss_pred hCCcccCCCCCC
Q 007156 604 SCMYSPAYRTYR 615 (615)
Q Consensus 604 ~~m~~P~Y~~~~ 615 (615)
..+|.|.|.+++
T Consensus 421 ~~~~~~~~~~~~ 432 (432)
T COG0281 421 ARLWKPEYRMKR 432 (432)
T ss_pred HHhcCcccccCC
Confidence 999999998864
No 6
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=3.3e-98 Score=763.96 Aligned_cols=277 Identities=61% Similarity=1.007 Sum_probs=269.6
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCc
Q 007156 331 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 410 (615)
Q Consensus 331 iQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L 410 (615)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 49999999999999999999999999999999999999999999999987 599999999999999999999999965 9
Q ss_pred cccchhhccccC--CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC
Q 007156 411 QHFKKPWAHEHE--PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 488 (615)
Q Consensus 411 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~ 488 (615)
+++|++||++.+ +.++|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCCh
Q 007156 489 GRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNI 568 (615)
Q Consensus 489 GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~i 568 (615)
|+|||||||||+||+||||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++.++.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 007156 569 RKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAESCMYSP 609 (615)
Q Consensus 569 r~vs~~VA~aVa~~A~~~GlA~~~~~~~dl~~~i~~~m~~P 609 (615)
|+||..||.||+++|+++|+|+..++++|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=8.6e-98 Score=844.82 Aligned_cols=364 Identities=28% Similarity=0.496 Sum_probs=330.9
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCCCcc-cccchhh
Q 007156 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (615)
Q Consensus 184 ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (615)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|||||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 345999999999999999 899999998 4666777999999999999999999996 9999999
Q ss_pred HHHHhhhcCCCCCceeeeeecCCCCcccccc-----CcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc---ccc
Q 007156 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLD-----DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI---QGT 334 (615)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~-----Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli---QGT 334 (615)
++|||+||||| ++|||+|.. |.+++++ -|-|.|++.|+++.++||+++++ +++++..+|++ |||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~~~-d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~----~~~~~~ip~f~DD~~GT 172 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELDES-DPDKLVEIVAALEPTFGGINLEDIKAPECFYIERE----LRERMKIPVFHDDQHGT 172 (763)
T ss_pred HHHHHhhcCCC---ccccccCCC-CHHHHHHHHHHhCCCcceeeeecccCchHHHHHHH----HHhcCCCceEecCcccH
Confidence 99999999999 999999976 7777754 47779999999999999998866 57776667777 999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
|+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|+++ +||||||++|||+++|.+.|+++|
T Consensus 173 a~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~ 243 (763)
T PRK12862 173 AIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----ENIWVTDIKGVVYEGRTELMDPWK 243 (763)
T ss_pred HHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----ccEEEEcCCCeeeCCCCccccHHH
Confidence 999999999999999999999999999999999999999986 48874 899999999999999976699999
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEe
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 494 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifA 494 (615)
++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||| |||||||||+||+| +|||
T Consensus 244 ~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a~~~~~~-~i~a 313 (763)
T PRK12862 244 ARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALANPT--PEILPEEARAVRPD-AIIA 313 (763)
T ss_pred HHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCCCc--ccCCHHHHHHhcCC-EEEE
Confidence 9999986 45799999998 999999999 8999999999997 999999999999 99999999999999 9999
Q ss_pred eCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccC--------------CCCCC
Q 007156 495 SGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQEN--------------FDKGL 560 (615)
Q Consensus 495 SGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~--------------~~~g~ 560 (615)
|| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||+++++++ +..++
T Consensus 314 tG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (763)
T PRK12862 314 TG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDY 383 (763)
T ss_pred EC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCc
Confidence 98 6999999999999999999999999999999999999999999999873 44566
Q ss_pred ccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007156 561 LYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 604 (615)
Q Consensus 561 l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~dl~~~i~~ 604 (615)
|||+..+ ++|+..||.||+++|+++|+|+. + .+++.+|+++
T Consensus 384 i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 384 LIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred ccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9996555 78999999999999999999985 3 3466666654
No 8
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.5e-97 Score=839.10 Aligned_cols=364 Identities=30% Similarity=0.503 Sum_probs=324.8
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCCCcc-cccchhh
Q 007156 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCHG-MGIPVGK 262 (615)
Q Consensus 184 ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 262 (615)
.+.|.++|||||+++|++ |+++|+++| + |+.|.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~-~-------------~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF-R-------------FTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh-h-------------hhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 345999999999999999 899999996 4 445555799999999999999999996 9999999
Q ss_pred HHHHhhhcCCCCCceeeeeecCCCCcccccc-----CcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc---ccc
Q 007156 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLD-----DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI---QGT 334 (615)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~-----Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli---QGT 334 (615)
++|||+||||| +||||+|. .|.+++++ -|-|.|++.|+++.++||+++++ .++++..+|++ |||
T Consensus 97 ~~L~~~~agid---~~di~~~~-~dpd~~v~~v~a~~~~fg~i~lED~~~p~~f~il~~----~~~~~~ipvf~DD~qGT 168 (764)
T PRK12861 97 AVLFKKFAGID---VFDIEINE-TDPDKLVDIIAGLEPTFGGINLEDIKAPECFTVERK----LRERMKIPVFHDDQHGT 168 (764)
T ss_pred HHHHhhccCCC---ccccccCC-CCHHHHHHHHHHHHhhcCCceeeeccCchHHHHHHH----HHhcCCCCeeccccchH
Confidence 99999999999 88888887 57777764 36669999999999999998866 46665567777 999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
|+|+||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| |||+||++|||+++|.+.|+++|
T Consensus 169 a~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k 239 (764)
T PRK12861 169 AITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----NIWVTDIEGVVYRGRTTLMDPDK 239 (764)
T ss_pred HHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----hEEEEcCCCeeeCCCcccCCHHH
Confidence 999999999999999999999999999999999999999975 498754 99999999999999976699999
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEe
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 494 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifA 494 (615)
++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+||||++ |+|++|||
T Consensus 240 ~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNPt--pE~~pe~a~~-~~g~aiva 309 (764)
T PRK12861 240 ERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANPT--PEIFPELAHA-TRDDVVIA 309 (764)
T ss_pred HHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCCC--ccCCHHHHHh-cCCCEEEE
Confidence 9999986 45799999998 899999998 8899999999997 599999999999 8999999987 99999999
Q ss_pred eCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCC------------CC--C
Q 007156 495 SGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFD------------KG--L 560 (615)
Q Consensus 495 SGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~------------~g--~ 560 (615)
|| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++++++. .| +
T Consensus 310 TG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (764)
T PRK12861 310 TG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQY 379 (764)
T ss_pred eC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCC
Confidence 97 799999999999999999999999999999999999999999999987533 34 4
Q ss_pred ccCCCCChhhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007156 561 LYPPFKNIRKISAHIAAEVAAKAYELGLATRLPPPKDLVKYAES 604 (615)
Q Consensus 561 l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~~~~~dl~~~i~~ 604 (615)
|+|+..+ ++|+.+||.||+++|+++|+|+. +. +++.+|+++
T Consensus 380 iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 380 LIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred CCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 5595555 78999999999999999999985 32 456666543
No 9
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=9.3e-97 Score=832.95 Aligned_cols=354 Identities=28% Similarity=0.493 Sum_probs=326.1
Q ss_pred cccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCcccccCCCCCCc-ccccchhh
Q 007156 184 EELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILGLGDLGCH-GMGIPVGK 262 (615)
Q Consensus 184 ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 262 (615)
.+.|+++||||||++|++ |+++|+++| ++++|| +.|+|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 346999999999999996 899999999 666665 469999999999999999999 89999999
Q ss_pred HHHHhhhcCCCCCceeeeeecCCCCcccccc-----CcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc---ccc
Q 007156 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLD-----DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI---QGT 334 (615)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~-----Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli---QGT 334 (615)
++|||+||||| ++|||+|.. |.+++++ -|-|.|++.|+++.++||+++++ +++++..+|++ |||
T Consensus 93 ~~l~~~~~gid---~~~i~~~~~-d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~----~~~~~~ip~f~DD~~GT 164 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVDEE-DPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEK----LRERMDIPVFHDDQHGT 164 (752)
T ss_pred HHHHHhhcCCC---ccccccCCC-CHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHH----HHHhcCCCeeccccchH
Confidence 99999999999 888888875 6676654 36779999999999999998866 56776667777 999
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
|+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++|||+||++|||+++|.++|+++|
T Consensus 165 a~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k 235 (752)
T PRK07232 165 AIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KENIIVCDSKGVIYKGRTEGMDEWK 235 (752)
T ss_pred HHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cccEEEEcCCCeecCCCcccccHHH
Confidence 999999999999999999999999999999999999999986 4887 6899999999999999966699999
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEe
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 494 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifA 494 (615)
++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+|||||+||+| +|||
T Consensus 236 ~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a~~~~~~-~i~a 305 (752)
T PRK07232 236 AAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEAKAVRPD-AIIA 305 (752)
T ss_pred HHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCCCC--ccCCHHHHHHhcCC-EEEE
Confidence 999998 445799999998 999999999 8899999999997 799999999999 89999999999999 9999
Q ss_pred eCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCcc--------------CCCCCC
Q 007156 495 SGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQE--------------NFDKGL 560 (615)
Q Consensus 495 SGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~--------------~~~~g~ 560 (615)
|| |+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++++ ++.+.+
T Consensus 306 tG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (752)
T PRK07232 306 TG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEY 375 (752)
T ss_pred EC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCc
Confidence 98 799999999999999999999999999999999999999999999886 688899
Q ss_pred ccCCCCChhhhHHHHHHHHHHHHHHcCCCCCC
Q 007156 561 LYPPFKNIRKISAHIAAEVAAKAYELGLATRL 592 (615)
Q Consensus 561 l~P~i~~ir~vs~~VA~aVa~~A~~~GlA~~~ 592 (615)
|+|+.++ ++|+..||.||+++|+++|+|+..
T Consensus 376 iip~~~~-~~~~~~va~av~~~a~~~g~a~~~ 406 (752)
T PRK07232 376 IIPKPFD-PRLIVKIAPAVAKAAMDSGVATRP 406 (752)
T ss_pred cCCCCCC-hhHHHHHHHHHHHHHHhhCcccCC
Confidence 9998888 679999999999999999999853
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=5.1e-95 Score=732.55 Aligned_cols=252 Identities=56% Similarity=0.931 Sum_probs=229.3
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCc
Q 007156 331 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 410 (615)
Q Consensus 331 iQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L 410 (615)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|++||++||||+|++|||+++| ++|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r-~~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDR-EDL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTT-SSH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccC-ccC
Confidence 399999999999999999999999999999999999999999999999985 999999999999999999999999 469
Q ss_pred cccchhhccccCCC---CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007156 411 QHFKKPWAHEHEPV---KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 487 (615)
Q Consensus 411 ~~~k~~fA~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT 487 (615)
+++|++|||+.++. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987765 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCC
Q 007156 488 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 567 (615)
Q Consensus 488 ~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ 567 (615)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 007156 568 IRKISAHIAAEVAAKAY 584 (615)
Q Consensus 568 ir~vs~~VA~aVa~~A~ 584 (615)
+|+||.+||.||+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=4.5e-92 Score=710.50 Aligned_cols=251 Identities=50% Similarity=0.780 Sum_probs=244.7
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCc
Q 007156 331 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 410 (615)
Q Consensus 331 iQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L 410 (615)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 39999999999999999999999999999999999999999999999987 599999999999999999999999965 8
Q ss_pred cccchh---hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007156 411 QHFKKP---WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS 487 (615)
Q Consensus 411 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT 487 (615)
+++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCC
Q 007156 488 QGRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 567 (615)
Q Consensus 488 ~GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ 567 (615)
+|||||||||||+||+||||+++|+||||+|||||||||+++++|++|||+||++||++||++++++++.++.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 007156 568 IRKISAHIAAEVAAKA 583 (615)
Q Consensus 568 ir~vs~~VA~aVa~~A 583 (615)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=4.6e-72 Score=540.53 Aligned_cols=164 Identities=63% Similarity=1.190 Sum_probs=149.1
Q ss_pred HhhhhhhhHHhhccCccccCCcccccchHHHHHHHhhhhcCCCccccccCCcchHHHHhccCCCCCeeEEEEeeCccccc
Q 007156 168 QERNQKLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIYSRPQGVFISLKDKGKVLEVLRNWPEKNIQVIVVTDGERILG 247 (615)
Q Consensus 168 ~~rNe~LFYrll~~~~ee~lPivYTPtVg~aC~~~s~i~r~p~Glyis~~d~g~i~~il~nwp~~~v~viVVTDG~rILG 247 (615)
|++||+|||+++.+|+||+||||||||||+||++||++|++|+|+|+|++|+|+|.++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHHHhhhcCCCCCceeeeeecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCc
Q 007156 248 LGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGE 327 (615)
Q Consensus 248 LGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp 327 (615)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 007156 328 RILI 331 (615)
Q Consensus 328 ~vli 331 (615)
+++|
T Consensus 161 ~~~I 164 (182)
T PF00390_consen 161 NALI 164 (182)
T ss_dssp TSEE
T ss_pred CeEE
Confidence 9998
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=8.8e-58 Score=453.96 Aligned_cols=222 Identities=35% Similarity=0.514 Sum_probs=206.6
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|.
T Consensus 2 qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L~ 72 (226)
T cd05311 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDLN 72 (226)
T ss_pred CchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhhh
Confidence 999999999999999999999999999999999999999999975 3876 6799999999999999976699
Q ss_pred ccchhhcccc--CCC-CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC
Q 007156 412 HFKKPWAHEH--EPV-KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 488 (615)
Q Consensus 412 ~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~ 488 (615)
++|++|+++. .+. .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 73 ~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~-- 142 (226)
T cd05311 73 PDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA-- 142 (226)
T ss_pred HHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc--
Confidence 9999999764 222 378899986 999999999 8899999999996 899999999999 89999999999
Q ss_pred CcEEEeeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCCh
Q 007156 489 GRAIFASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNI 568 (615)
Q Consensus 489 GraifASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~i 568 (615)
|..||+|| +++.|+|+||+|||||||||+++++|++|||+||++||++||++++++++..|.|||++++
T Consensus 143 ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~- 211 (226)
T cd05311 143 GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD- 211 (226)
T ss_pred CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc-
Confidence 55599998 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHH
Q 007156 569 RKISAHIAAEVAAKA 583 (615)
Q Consensus 569 r~vs~~VA~aVa~~A 583 (615)
|+||..||.+|+++|
T Consensus 212 ~~~~~~va~~v~~~a 226 (226)
T cd05311 212 PRVVPRVATAVAKAA 226 (226)
T ss_pred hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.85 E-value=3.5e-08 Score=84.48 Aligned_cols=86 Identities=38% Similarity=0.499 Sum_probs=76.0
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc
Q 007156 333 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 412 (615)
Q Consensus 333 GTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~ 412 (615)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | -++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999763 2 267999988
Q ss_pred cchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007156 413 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 413 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 470 (615)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999988888 455557999999875
No 15
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.50 E-value=0.001 Score=72.69 Aligned_cols=147 Identities=23% Similarity=0.354 Sum_probs=97.5
Q ss_pred CChhhHHHHHHHHHHHHHHHhCccccc-ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcC
Q 007156 305 AIGQEYAELLHEFMTAVKQNYGERILI-QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTN 383 (615)
Q Consensus 305 i~g~ey~~~vdeFv~Av~~~~gp~vli-QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~G 383 (615)
..|..-..++.+.+..-++.. ..+-| .|.-+|..+++--|.+..| ++.+.+++|+|+|..|..++..|.. .|
T Consensus 131 ~~g~~l~~lf~~a~~~~k~vr-~~t~i~~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G 203 (417)
T TIGR01035 131 TVGKVLERLFQKAFSVGKRVR-TETDISAGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KG 203 (417)
T ss_pred CchHHHHHHHHHHHHHhhhhh-hhcCCCCCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CC
Confidence 345556666667666655433 34445 7777788888766666655 4889999999999999999988864 25
Q ss_pred CChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccCC
Q 007156 384 MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNE 462 (615)
Q Consensus 384 ls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~e 462 (615)
+ .+|+++|+.. +| .....+.+....-+..++.+++.. .|++|-+++.+ .++++++++.+.....
T Consensus 204 ~------~~V~v~~rs~----~r---a~~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~ 268 (417)
T TIGR01035 204 V------GKILIANRTY----ER---AEDLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERT 268 (417)
T ss_pred C------CEEEEEeCCH----HH---HHHHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCC
Confidence 3 5799988841 11 111111111111112467788875 99999987544 4789999998754333
Q ss_pred Cc-EEEecCCCC
Q 007156 463 KP-IIFSLSNPT 473 (615)
Q Consensus 463 rP-IIFaLSNPt 473 (615)
+| +|+-+++|-
T Consensus 269 ~~~~viDla~Pr 280 (417)
T TIGR01035 269 RPLFIIDIAVPR 280 (417)
T ss_pred CCeEEEEeCCCC
Confidence 56 889999997
No 16
>PLN02477 glutamate dehydrogenase
Probab=97.20 E-value=0.0053 Score=67.57 Aligned_cols=130 Identities=25% Similarity=0.233 Sum_probs=92.3
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCccccCCccCcc
Q 007156 333 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 333 GTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~-lvD~~GLi~~~R~~~L~ 411 (615)
-||-=+..++-.+++..|.+|++.||+|.|.|..|.+.|++|.+ .|. +|+ +.|++|-|++... |+
T Consensus 184 aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~G--LD 249 (410)
T PLN02477 184 ATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNENG--LD 249 (410)
T ss_pred cchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCCC--CC
Confidence 48888888889999999999999999999999999999999865 352 566 8999999998753 43
Q ss_pred ccch-hhccccC--------CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCcCCCCHH
Q 007156 412 HFKK-PWAHEHE--------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAE 481 (615)
Q Consensus 412 ~~k~-~fA~~~~--------~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEctpe 481 (615)
.... .+.+... ..-+-.+.+. .+.||||=+.- ++.+|++.+..+ .-.||.--+| |+ -+| ++
T Consensus 250 ~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~ 320 (410)
T PLN02477 250 IPALRKHVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--AD 320 (410)
T ss_pred HHHHHHHHHhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HH
Confidence 2111 1111100 0012233333 48999996654 779999999987 6889999999 65 344 44
Q ss_pred HHhc
Q 007156 482 EAYT 485 (615)
Q Consensus 482 dA~~ 485 (615)
+.++
T Consensus 321 ~~L~ 324 (410)
T PLN02477 321 EILR 324 (410)
T ss_pred HHHH
Confidence 5554
No 17
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.18 E-value=0.0037 Score=68.38 Aligned_cols=121 Identities=26% Similarity=0.413 Sum_probs=80.6
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+. ..| ..
T Consensus 160 ~~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~ 220 (423)
T PRK00045 160 AGAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AE 220 (423)
T ss_pred CCCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HH
Confidence 6677777777655544444 6889999999999999999888853 253 689988874 122 11
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccC--CCcEEEecCCCC
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN--EKPIIFSLSNPT 473 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~--erPIIFaLSNPt 473 (615)
...+.+.....+..++.+++.. .|++|-+++.+ .+++++.++.+.+.. ...+|+=||+|-
T Consensus 221 ~la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 221 ELAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 1222221111112356677764 89999988755 478999999875322 335888899997
No 18
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.15 E-value=0.012 Score=65.44 Aligned_cols=161 Identities=18% Similarity=0.188 Sum_probs=111.3
Q ss_pred CChhhHHHHHHHHHHHHHHHhCccccc--------------------------------------------ccchHHHHH
Q 007156 305 AIGQEYAELLHEFMTAVKQNYGERILI--------------------------------------------QGTASVVLA 340 (615)
Q Consensus 305 i~g~ey~~~vdeFv~Av~~~~gp~vli--------------------------------------------QGTAaVvLA 340 (615)
.+..|-..|...|+.++.+.+||.+-| ..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 344566777777777777777765554 457777788
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCccccCCccCcccc-----c
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHF-----K 414 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lv-D~~GLi~~~R~~~L~~~-----k 414 (615)
++..+++..+.+|++.||+|.|-|..|...|++|.+ .|. +|+.+ |++|-|+.... |+.. +
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~G--LD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEEG--IDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCCC--CCHHHHHHHH
Confidence 888889999999999999999999999999999964 353 55655 99999998753 3322 1
Q ss_pred h-------hhccc-cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007156 415 K-------PWAHE-HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 485 (615)
Q Consensus 415 ~-------~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEctpedA~~ 485 (615)
. .|... ....-+- +.+-.++.||||=+.. .+..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0000112 2234568999997665 77999999999853 45789999998 66 233 445554
No 19
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.05 E-value=0.0065 Score=61.28 Aligned_cols=130 Identities=22% Similarity=0.237 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 334 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 334 TAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. . |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 66667788888999999999999999999999999999999763 43 678899999988876 4 3321
Q ss_pred -chhhccccCCCCC-------HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCcCCCCHHHHh
Q 007156 414 -KKPWAHEHEPVKE-------LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAY 484 (615)
Q Consensus 414 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEctpedA~ 484 (615)
...+.++...... =.+.+-.++.||||=++. .+..|++..+.+ .-++|.--+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1122211110000 013344568999997777 569999999988 4789998888 7742 355665
Q ss_pred c
Q 007156 485 T 485 (615)
Q Consensus 485 ~ 485 (615)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 20
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.01 E-value=0.032 Score=62.29 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=110.4
Q ss_pred CChhhHHHHHHHHHHHHHHHhCccccc--------------------------------------------ccchHHHHH
Q 007156 305 AIGQEYAELLHEFMTAVKQNYGERILI--------------------------------------------QGTASVVLA 340 (615)
Q Consensus 305 i~g~ey~~~vdeFv~Av~~~~gp~vli--------------------------------------------QGTAaVvLA 340 (615)
.+..|-..|...||..+.+..||...| .-||-=+..
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~ 222 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVY 222 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHH
Confidence 455667888889999998888877666 347777888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCccccCCccCccccch----
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESLQHFKK---- 415 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~-lvD~~GLi~~~R~~~L~~~k~---- 415 (615)
++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .|+..+.
T Consensus 223 ~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l~ 288 (454)
T PTZ00079 223 FVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYLM 288 (454)
T ss_pred HHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHHH
Confidence 8889999999999999999999999999999999753 53 455 999999999875 3543222
Q ss_pred -----------hhccccCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCC
Q 007156 416 -----------PWAHEHEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 474 (615)
Q Consensus 416 -----------~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts 474 (615)
.|+...... -+-.+ +-.++.|||+=+.. .+.+|++-++.+-+ +.-.+|.=-+| |++
T Consensus 289 ~~k~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 289 DLKNVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHhhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 221100000 01111 22367999997776 56999999998853 35668888888 663
No 21
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.86 E-value=0.013 Score=61.62 Aligned_cols=119 Identities=24% Similarity=0.398 Sum_probs=77.4
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.|-.+|+.+++-.|....|. +.+.+|+|+|+|..|..+++.+... | .++|+++|+. .+| ..
T Consensus 156 ~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~~~V~v~~r~----~~r---a~ 216 (311)
T cd05213 156 RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------VAEITIANRT----YER---AE 216 (311)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------CCEEEEEeCC----HHH---HH
Confidence 66667777776666665554 8999999999999999998888642 3 2689999873 222 11
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccC--CCcEEEecCCCC
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN--EKPIIFSLSNPT 473 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~--erPIIFaLSNPt 473 (615)
...+.|-....+..++.+++.. .|++|-+++.+.. +++++.+.+.. ..-+|+=||||-
T Consensus 217 ~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 217 ELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred HHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 2222221111112357777775 8999999887753 66666654322 234777899986
No 22
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.85 E-value=0.022 Score=63.43 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=106.8
Q ss_pred CChhhHHHHHHHHHHHHHHHhCccccc--------------------------------------------ccchHHHHH
Q 007156 305 AIGQEYAELLHEFMTAVKQNYGERILI--------------------------------------------QGTASVVLA 340 (615)
Q Consensus 305 i~g~ey~~~vdeFv~Av~~~~gp~vli--------------------------------------------QGTAaVvLA 340 (615)
.+..|...|.-.||.++...+||...| +-||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 466778888889999999888887776 457777888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 420 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~ 420 (615)
++-.+++..|.+|+++||+|-|.|..|...|++|.+. |. +=+-+-|++|-|++.. .|+..+..|-.+
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999999763 53 3355699999988764 354433222111
Q ss_pred c-----C-----------CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CC
Q 007156 421 H-----E-----------PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 473 (615)
Q Consensus 421 ~-----~-----------~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 473 (615)
. . ..-+-.+ +-.++.|+||=+.. .+.+|++.++.+... -.-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCCCCC
Confidence 0 0 0001111 11246888886655 568999999988531 1137777777 54
No 23
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.72 E-value=0.02 Score=63.44 Aligned_cols=111 Identities=20% Similarity=0.264 Sum_probs=75.0
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .| .+++++|.+- .|. +.
T Consensus 192 ~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~G-------a~ViV~d~dp----~ra--~~ 250 (425)
T PRK05476 192 YGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LG-------ARVIVTEVDP----ICA--LQ 250 (425)
T ss_pred HHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEcCCc----hhh--HH
Confidence 7787766666553 34677899999999999999999988864 25 2688888641 111 11
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
..+ ..-...++.++++. .|++|-+++..++|+.+.++.|. ..-|++-.+-+.
T Consensus 251 A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 251 AAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred HHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 111 11112368888875 99999988877788888888885 334555555444
No 24
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.70 E-value=0.013 Score=57.03 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=66.5
Q ss_pred HHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccC
Q 007156 344 SAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE 422 (615)
Q Consensus 344 ~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~ 422 (615)
-.++-...+|.+.+++++|+|. .|..+|+.|.. .| .++++++++
T Consensus 33 ~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g-------~~V~v~~r~----------------------- 77 (168)
T cd01080 33 ELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RN-------ATVTVCHSK----------------------- 77 (168)
T ss_pred HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CC-------CEEEEEECC-----------------------
Confidence 3445556789999999999998 59889988864 24 258888864
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 423 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 423 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
..+|.+.++. .|++|.+++.+.+|+++.++ +.-+|+=++.|-
T Consensus 78 -~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999988899999764 346788888876
No 25
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.67 E-value=0.0017 Score=60.20 Aligned_cols=102 Identities=24% Similarity=0.425 Sum_probs=67.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc---cCCCCCH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKEL 427 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L 427 (615)
.++++.|++++|||.+|-+++..|... |. ++|+++++. .+| .....+.|... ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 389999999999999999988888653 54 789999983 222 33333333110 1123456
Q ss_pred HHHHhccCCcEEEEccCCCC-CCCHHHHHHHHccCCCcEEEecCCCCC
Q 007156 428 VDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPIIFaLSNPts 474 (615)
.+.++. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 677775 999999987663 7888888653211 249999999964
No 26
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.65 E-value=0.041 Score=61.33 Aligned_cols=162 Identities=15% Similarity=0.112 Sum_probs=113.2
Q ss_pred CChhhHHHHHHHHHHHHHHHhCccccc--------------------------------------------ccchHHHHH
Q 007156 305 AIGQEYAELLHEFMTAVKQNYGERILI--------------------------------------------QGTASVVLA 340 (615)
Q Consensus 305 i~g~ey~~~vdeFv~Av~~~~gp~vli--------------------------------------------QGTAaVvLA 340 (615)
.+..|-..|.-.||.++.+-.||..-| +-||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 355577888888888888666766555 348888888
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchh----
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP---- 416 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~---- 416 (615)
++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|++.. .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~~ 280 (445)
T PRK14030 214 FVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYMLE 280 (445)
T ss_pred HHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHHH
Confidence 8999999999999999999999999999999999653 63 5577789999998864 34433211
Q ss_pred -----------hccccCCC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCcCCCCHHH
Q 007156 417 -----------WAHEHEPV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEE 482 (615)
Q Consensus 417 -----------fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEctped 482 (615)
+....+.. -+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| +++
T Consensus 281 ~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~~ 354 (445)
T PRK14030 281 LRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AID 354 (445)
T ss_pred HHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HHH
Confidence 11010000 01112 22357999997665 56999999999854 35778998898 542 33 445
Q ss_pred Hhc
Q 007156 483 AYT 485 (615)
Q Consensus 483 A~~ 485 (615)
++.
T Consensus 355 iL~ 357 (445)
T PRK14030 355 KFI 357 (445)
T ss_pred HHH
Confidence 554
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.41 E-value=0.025 Score=59.19 Aligned_cols=139 Identities=18% Similarity=0.280 Sum_probs=92.6
Q ss_pred cccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCc
Q 007156 331 IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 410 (615)
Q Consensus 331 iQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L 410 (615)
+..+-.++=.++.-+++..+..|.+.+++|+|+|..|..+|+.+.. .|. +++++|++. . .+
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~-----~G~-------~V~v~~R~~----~---~~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSA-----LGA-------RVFVGARSS----A---DL 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHH-----CCC-------EEEEEeCCH----H---HH
Confidence 3666677766777888888899999999999999999999999964 252 688888741 1 11
Q ss_pred cccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCc
Q 007156 411 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR 490 (615)
Q Consensus 411 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~Gr 490 (615)
...+ .+....-...+|.+.+++ .|++|=+. +.+.++++.++.|. +.-+|+=+|..- -++..+.|.+ -.-+
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~ 257 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIK 257 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCE
Confidence 1111 000001112357777775 89999754 44588999998884 456888776422 4556655544 3447
Q ss_pred EEEeeCCC
Q 007156 491 AIFASGSP 498 (615)
Q Consensus 491 aifASGSP 498 (615)
++.+-|-|
T Consensus 258 a~~~~glP 265 (287)
T TIGR02853 258 ALLAPGLP 265 (287)
T ss_pred EEEeCCCC
Confidence 77787754
No 28
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.38 E-value=0.017 Score=60.53 Aligned_cols=163 Identities=18% Similarity=0.278 Sum_probs=102.8
Q ss_pred hHHHHhhhcCCCCCceeeeeecCCCCcccc-------ccCcccccccccCCChhhHHH--HHHHHHHHHHHHhCcccccc
Q 007156 262 KLSLYTALGGIRPSACLPVTIDVGTNNEKL-------LDDEFYIGLRQKRAIGQEYAE--LLHEFMTAVKQNYGERILIQ 332 (615)
Q Consensus 262 Kl~LYta~gGI~P~~~LPI~LDvGTnne~L-------L~Dp~YlGlr~~Ri~g~ey~~--~vdeFv~Av~~~~gp~vliQ 332 (615)
|-..+..+ ||+ +-=+.|+-.+..++| -+|+-+-|+..-.--.+..++ ++|+. ...+..=|-+.+..
T Consensus 54 ~~~~~~~~-Gi~---~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~n~ 128 (283)
T PRK14192 54 KGNACRRV-GMD---SLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCLGF 128 (283)
T ss_pred HHHHHHHc-CCe---EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCcccc
Confidence 33333333 588 766777433344443 346655676544332233333 44443 22222222222222
Q ss_pred --------cchHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 007156 333 --------GTASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 403 (615)
Q Consensus 333 --------GTAaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~ 403 (615)
+.+-.|-.|++..++..+.+++.+++|++|+|- +|..+|.+|.. .| | .+.+++++
T Consensus 129 G~l~~~~~~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~---- 192 (283)
T PRK14192 129 GRMAMGEAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR---- 192 (283)
T ss_pred CccccCCCcccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC----
Confidence 336667799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred cCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEec-CCCC
Q 007156 404 SSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSL-SNPT 473 (615)
Q Consensus 404 ~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaL-SNPt 473 (615)
..+|.+.+++ .|++|-+.+.++.|+.++++ +.-+|+=. .||.
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~ 235 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPR 235 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeec
Confidence 1246676764 99999999988888888764 44455544 3553
No 29
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.37 E-value=0.042 Score=60.73 Aligned_cols=254 Identities=21% Similarity=0.339 Sum_probs=143.6
Q ss_pred HHHHhhhcCCCCCceeeeeecCCCCccccc---cCcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc-ccchHHH
Q 007156 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLL---DDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI-QGTASVV 338 (615)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL---~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli-QGTAaVv 338 (615)
-.||..++|+| .| =+| . .++| .+-|-.+. ...-.|..-..++.+=++.- +++--..-| .|--+|.
T Consensus 94 ~HLfrVAsGLD---Sm----VlG-E-~QILGQVK~Ay~~a~-~~g~~g~~L~~lFqkAi~~g-KrvRseT~I~~~~VSi~ 162 (414)
T COG0373 94 RHLFRVASGLD---SL----VLG-E-TQILGQVKDAYAKAQ-ENGTLGKVLNRLFQKAISVG-KRVRSETGIGKGAVSIS 162 (414)
T ss_pred HHHHHHhccch---hh----hcC-c-HHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHH-HHhhcccCCCCCccchH
Confidence 57899999999 33 345 2 2333 13332222 22223333333322211111 222223333 6666666
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc
Q 007156 339 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 418 (615)
Q Consensus 339 LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA 418 (615)
-|++--|-++.|. |++.+++|+|||..|..+|+.|... |+ ++|+++.+ |..|. +.+|
T Consensus 163 saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------~~i~IaNR----T~erA-------~~La 219 (414)
T COG0373 163 SAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------KKITIANR----TLERA-------EELA 219 (414)
T ss_pred HHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------CEEEEEcC----CHHHH-------HHHH
Confidence 6666666666655 9999999999999999999988763 54 78998877 33332 2333
Q ss_pred ccc----CCCCCHHHHHhccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEE
Q 007156 419 HEH----EPVKELVDAVNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493 (615)
Q Consensus 419 ~~~----~~~~~L~e~V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~Graif 493 (615)
+.. -....|.+.+.. .||+|-.+ ++.-+++.+.++.-.+..++=+||=|+||-.- ++
T Consensus 220 ~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdi---------e~------- 281 (414)
T COG0373 220 KKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDV---------EP------- 281 (414)
T ss_pred HHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCC---------Cc-------
Confidence 321 123456677766 89888654 44468899988876544444499999999831 11
Q ss_pred eeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHH-----HccCCccCCCCCCccCCCCCh
Q 007156 494 ASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEAL-----AGQVTQENFDKGLLYPPFKNI 568 (615)
Q Consensus 494 ASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aL-----A~~v~~~~~~~g~l~P~i~~i 568 (615)
..+.-+|+++|===-|-.+.-.-..-..+.. ++|+++ +.+.. .+..-.+-|.+.++
T Consensus 282 ----------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae~iIeee~~~~~~--~l~~~~~~~~i~~l 342 (414)
T COG0373 282 ----------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAEAIIEEELAEFME--WLKKLEVVPTIRAL 342 (414)
T ss_pred ----------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH--HHHHhhchHHHHHH
Confidence 1123445555543333333222111122211 222222 11111 23455678999999
Q ss_pred hhhHHHHHHHHHHHHHHcC
Q 007156 569 RKISAHIAAEVAAKAYELG 587 (615)
Q Consensus 569 r~vs~~VA~aVa~~A~~~G 587 (615)
|+-+..|...-.+.|.+.-
T Consensus 343 r~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 343 REQAEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9888888888888887543
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.33 E-value=0.045 Score=60.31 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=80.2
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .| -+++++|.+- .|
T Consensus 175 yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~G-------a~ViV~d~dp----~r----- 230 (406)
T TIGR00936 175 YGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MG-------ARVIVTEVDP----IR----- 230 (406)
T ss_pred cccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----Cc-------CEEEEEeCCh----hh-----
Confidence 788877666655 556778999999999999999999998753 25 2588887642 11
Q ss_pred ccchhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHH
Q 007156 412 HFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEA 483 (615)
Q Consensus 412 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA 483 (615)
...|+ +.-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+-.. .|+.-++.
T Consensus 231 ---~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~~~--~eId~~aL 293 (406)
T TIGR00936 231 ---ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGHFD--VEIDVKAL 293 (406)
T ss_pred ---HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECCCC--ceeCHHHH
Confidence 11111 11112357788875 89999888777788888888874 445666666654 55555544
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.31 E-value=0.032 Score=56.69 Aligned_cols=122 Identities=25% Similarity=0.272 Sum_probs=88.2
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc
Q 007156 333 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 412 (615)
Q Consensus 333 GTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~ 412 (615)
-||-=+..++-.+++..+.+|.+.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++.... |+.
T Consensus 9 ~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld~ 75 (227)
T cd01076 9 ATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LDV 75 (227)
T ss_pred cchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CCH
Confidence 477778888889999999999999999999999999999998653 53 34559999999988653 332
Q ss_pred cch-hhccccCC------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CC
Q 007156 413 FKK-PWAHEHEP------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PT 473 (615)
Q Consensus 413 ~k~-~fA~~~~~------~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pt 473 (615)
... .+.+.... . -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 76 ~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 76 PALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 111 11111000 0 11223 3345889999877 4779999999998 4889999999 55
No 32
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.31 E-value=0.018 Score=63.46 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=86.4
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.|||--++-+++ |.++..+.+.+++|+|+|..|.++|..+.. .|. +++++|.+ .
T Consensus 182 ~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ViV~d~d----~------- 235 (413)
T cd00401 182 YGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------RVIVTEVD----P------- 235 (413)
T ss_pred chhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECC----h-------
Confidence 899988887776 466778999999999999999999988754 352 57777763 1
Q ss_pred ccchhhcccc-CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc
Q 007156 412 HFKKPWAHEH-EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 485 (615)
Q Consensus 412 ~~k~~fA~~~-~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~ 485 (615)
.+..+|+.. -...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.+. .|+.+.+...
T Consensus 236 -~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 236 -ICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred -hhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCCCC--CccCHHHHHh
Confidence 122233221 111246788875 89999999888888888888885 455666667664 7888887654
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=96.31 E-value=0.036 Score=62.79 Aligned_cols=180 Identities=22% Similarity=0.355 Sum_probs=106.5
Q ss_pred HHHHhhhcCCCCCceeeeeecCCCCcccccc---CcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc-ccchHHH
Q 007156 263 LSLYTALGGIRPSACLPVTIDVGTNNEKLLD---DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI-QGTASVV 338 (615)
Q Consensus 263 l~LYta~gGI~P~~~LPI~LDvGTnne~LL~---Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli-QGTAaVv 338 (615)
-+||..++|+| .+ =+| . .++|. +-|-.+... .-.|+.-..++..=+.+-|+.= -.+-| .|--+|.
T Consensus 180 ~HLfrVasGLD---Sm----VlG-E-~QIlgQVK~A~~~A~~~-g~~g~~L~~LF~~Ai~~~KrVR-teT~I~~~~vSv~ 248 (519)
T PLN00203 180 QHLFEVSGGLD---SL----VLG-E-GQILAQVKQVVKVGQGV-DGFGRNLSGLFKHAITAGKRVR-TETNIASGAVSVS 248 (519)
T ss_pred HHHHHHHhhhh---hh----hhC-C-hHHHHHHHHHHHHHHHc-CCccHHHHHHHHHHHHHHHHHh-hccCCCCCCcCHH
Confidence 47888888888 22 234 2 23321 223222222 2234444444433222222221 23334 6666677
Q ss_pred HHHHHHHHHHhCC-CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhh
Q 007156 339 LAGLISAMKFLGG-SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW 417 (615)
Q Consensus 339 LAgll~Alr~~g~-~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~f 417 (615)
-+++--|.+..|. +|.+.+|+|+|||..|..+++.|.. .|. ++|+++++. .++ .......|
T Consensus 249 s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~~La~~~ 310 (519)
T PLN00203 249 SAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VAALREEF 310 (519)
T ss_pred HHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HHHHHHHh
Confidence 6777777777764 6999999999999999998887753 353 679998874 222 22222222
Q ss_pred cc---ccCCCCCHHHHHhccCCcEEEEccCCC-CCCCHHHHHHHHccC---CCc-EEEecCCCC
Q 007156 418 AH---EHEPVKELVDAVNAIKPTILIGTSGQG-RTFTKEVVEAMASLN---EKP-IIFSLSNPT 473 (615)
Q Consensus 418 A~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~---erP-IIFaLSNPt 473 (615)
-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-
T Consensus 311 ~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 311 PDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred CCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 10 01123467788875 99999886543 489999999985321 244 566799996
No 34
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.14 E-value=0.041 Score=57.77 Aligned_cols=128 Identities=22% Similarity=0.308 Sum_probs=80.4
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE 420 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~ 420 (615)
++..+++..+.++...|++|+|+|.+|..++..+.. .| -+++++|++- . + +...+..-++
T Consensus 138 av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~---~-~---~~~~~~~G~~- 197 (296)
T PRK08306 138 AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS---A-H---LARITEMGLS- 197 (296)
T ss_pred HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH---H-H---HHHHHHcCCe-
Confidence 445567777889999999999999999999888864 25 3799998851 1 1 1111000000
Q ss_pred cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCC-cEEEeeCCC
Q 007156 421 HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG-RAIFASGSP 498 (615)
Q Consensus 421 ~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~G-raifASGSP 498 (615)
.-...+|.+.++. .|++|-++. ...++++.++.|. +.-+|+=++... -.|..+.|.+ .| +++.++|-|
T Consensus 198 ~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~~~~~lp 266 (296)
T PRK08306 198 PFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKALLAPGLP 266 (296)
T ss_pred eecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEEEECCCC
Confidence 0112357777775 999998754 5578999998885 566777665433 2354544433 34 445556643
No 35
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.13 E-value=0.035 Score=59.90 Aligned_cols=113 Identities=20% Similarity=0.324 Sum_probs=78.7
Q ss_pred chHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc
Q 007156 334 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 412 (615)
Q Consensus 334 TAaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~ 412 (615)
|+++...++--|.+..|..|++.++++.|| |+.|--++++|... .| .+++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~g------v~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TG------VAELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CC------CCEEEEEcCC----HHH---HHH
Confidence 666777888888888999999999999999 89999999998642 23 2689988874 112 333
Q ss_pred cchhhccccCCCCCHHHHHhccCCcEEEEccCCC-C-CCCHHHHHHHHccCCCc-EEEecCCCCC
Q 007156 413 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQG-R-TFTKEVVEAMASLNEKP-IIFSLSNPTS 474 (615)
Q Consensus 413 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g-~Fteevv~~Ma~~~erP-IIFaLSNPts 474 (615)
.+.++.. ....+|.+++.. +|+++=+++.+ . .++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333321 123467788876 99999887764 3 2677655 344 5556888863
No 36
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.99 E-value=0.14 Score=53.26 Aligned_cols=126 Identities=17% Similarity=0.117 Sum_probs=89.8
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEccCCccccCCccCc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIW-LVDSKGLIVSSRLESL 410 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~-lvD~~GLi~~~R~~~L 410 (615)
+-||-=+.-++-.+++..+.+|++.||+|-|-|..|.+.|++|.+ .|. +++ +.|++|-|+.... |
T Consensus 15 ~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~G--l 80 (254)
T cd05313 15 EATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPDG--F 80 (254)
T ss_pred chhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCCC--C
Confidence 567777888888899999999999999999999999999999965 253 455 9999999998753 4
Q ss_pred cccch---------------hhcccc--CCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-C
Q 007156 411 QHFKK---------------PWAHEH--EPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-P 472 (615)
Q Consensus 411 ~~~k~---------------~fA~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-P 472 (615)
+..+. .|.... ...-+-.|.. ..+.||||=+.. ++.+|++.++.+.+ +.-.+|.--+| |
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p 157 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMP 157 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCC
Confidence 32111 111000 0001122222 457999997655 67999999999843 45789999998 7
Q ss_pred CC
Q 007156 473 TS 474 (615)
Q Consensus 473 ts 474 (615)
++
T Consensus 158 ~t 159 (254)
T cd05313 158 CT 159 (254)
T ss_pred CC
Confidence 63
No 37
>PLN02494 adenosylhomocysteinase
Probab=95.96 E-value=0.076 Score=59.71 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=88.4
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +++++|.+.. +. +.
T Consensus 234 yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~VIV~e~dp~----r~--~e 292 (477)
T PLN02494 234 YGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------RVIVTEIDPI----CA--LQ 292 (477)
T ss_pred ccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCch----hh--HH
Confidence 799888888887 567788999999999999999999999853 253 5888876421 10 11
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 486 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~w 486 (615)
....-| ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+. .|+.-++..++
T Consensus 293 A~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~~--~eID~~aL~~~ 355 (477)
T PLN02494 293 ALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHFD--NEIDMLGLETY 355 (477)
T ss_pred HHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCCC--CccCHHHHhhc
Confidence 111111 11358888875 89999877777788999999985 566888788765 78887776654
No 38
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.95 E-value=0.068 Score=58.92 Aligned_cols=115 Identities=19% Similarity=0.307 Sum_probs=74.1
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.|--+|+-+|+=-|.+.. .++++.|++++|||.+|-.+|..|.. .|. ++|+++++. .+|..
T Consensus 159 ~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~--- 219 (414)
T PRK13940 159 HCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQ--- 219 (414)
T ss_pred CCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHH---
Confidence 555556656655555544 35889999999999999888888754 354 689998884 22222
Q ss_pred ccchhhc-cccCCCCCHHHHHhccCCcEEEEccCCCC-CCCHHHHHHHHccCCCcE-EEecCCCC
Q 007156 412 HFKKPWA-HEHEPVKELVDAVNAIKPTILIGTSGQGR-TFTKEVVEAMASLNEKPI-IFSLSNPT 473 (615)
Q Consensus 412 ~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Fteevv~~Ma~~~erPI-IFaLSNPt 473 (615)
.....|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=|++|-
T Consensus 220 ~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 220 KITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 1222221 111123456777775 999999887653 67876642 4565 46799997
No 39
>PLN00106 malate dehydrogenase
Probab=95.83 E-value=0.056 Score=57.77 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 418 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA 418 (615)
|.-|.|||..|..-. .||+|+|| |..|..+|..|+. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 445778888887665 59999999 9999999998864 244 35899999865 1111112433221 11
Q ss_pred ccc--CCCCCHHHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCC
Q 007156 419 HEH--EPVKELVDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 419 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
+-. ....++.+++++ .|+.|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 123467888987 8888877665421 2457888889999999999999999
No 40
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.67 E-value=0.077 Score=52.64 Aligned_cols=123 Identities=17% Similarity=0.224 Sum_probs=83.7
Q ss_pred cchHHHHHHHHHHHHHh--CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCc
Q 007156 333 GTASVVLAGLISAMKFL--GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESL 410 (615)
Q Consensus 333 GTAaVvLAgll~Alr~~--g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L 410 (615)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 36666777788888885 8899999999999999999999988653 5 3688888751 123
Q ss_pred cccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007156 411 QHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTSQSECTAEEAYT 485 (615)
Q Consensus 411 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts~aEctpedA~~ 485 (615)
..++..|.. . .-+..+... .+.|+++=++. ++++|++.++.| .-++|..-+| |++. ..+++.++
T Consensus 65 ~~~~~~~g~--~-~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--T-VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--E-EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 1 112233333 36999995555 679999999999 4678888888 6632 33445544
No 41
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.67 E-value=0.041 Score=50.69 Aligned_cols=108 Identities=20% Similarity=0.338 Sum_probs=68.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 419 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~ 419 (615)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. | -.+++++|++ .+ ......+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~---~~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LE---KAKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HH---HHHHHHHHHhh
Confidence 58999999988889999999999999888888887542 3 2578888874 11 12222222221
Q ss_pred c--cCCCCCHHHHHhccCCcEEEEccCCCC------CCCHHHHHHHHccCCCcEEEecC-CCC
Q 007156 420 E--HEPVKELVDAVNAIKPTILIGTSGQGR------TFTKEVVEAMASLNEKPIIFSLS-NPT 473 (615)
Q Consensus 420 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Fteevv~~Ma~~~erPIIFaLS-NPt 473 (615)
. .....++.++++. +|++|-+...+- .|.+.. .....+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 1 0123456666664 999998776442 122221 24566777775 444
No 42
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.65 E-value=0.046 Score=57.74 Aligned_cols=83 Identities=17% Similarity=0.369 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 138 ~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t------------- 192 (286)
T PRK14175 138 VPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS------------- 192 (286)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-------------
Confidence 3456778888889999999999999999988 99999999964 24 4677777641
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.+|.+.+++ +|++|...+.++.|++++++
T Consensus 193 -----------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk 221 (286)
T PRK14175 193 -----------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK 221 (286)
T ss_pred -----------hhHHHHHhh--CCEEEECCCCCcccCHHHcC
Confidence 257788887 99999999999999998764
No 43
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.64 E-value=0.037 Score=57.76 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc-cchhhc
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWA 418 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~-~k~~fA 418 (615)
.|++.+++..+..++.++++++|||.||.+++..|.. .|+ ++|+++|+. ..|.+.+.+ ++..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4566666655556788999999999999999988875 364 679999985 233222221 111111
Q ss_pred c-ccCCCCCHHHHHhccCCcEEEEccCCC
Q 007156 419 H-EHEPVKELVDAVNAIKPTILIGTSGQG 446 (615)
Q Consensus 419 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 446 (615)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 01112345555654 89999988655
No 44
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.32 E-value=0.21 Score=51.57 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=100.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc-------hhhccc--------
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK-------KPWAHE-------- 420 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k-------~~fA~~-------- 420 (615)
.||.|+|+|..|.+||..+... | .+++++|.+- + .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888642 5 3689998741 1 111111 011000
Q ss_pred -------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEE
Q 007156 421 -------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIF 493 (615)
Q Consensus 421 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~Graif 493 (615)
.....++.++++. .|++|=+-.-.-.+.+++++...+......|++ ||.+++ .+.++.+..+-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 0113578888876 888885432222356777777777666556663 565544 444544433211113
Q ss_pred eeCCCCCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCcc-CCCCChhhhH
Q 007156 494 ASGSPFDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLY-PPFKNIRKIS 572 (615)
Q Consensus 494 ASGSPF~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~-P~i~~ir~vs 572 (615)
....||.|+.... ..-| .....-+++.+ +.+..+...+... -.++ |..- -.|.
T Consensus 139 vg~Hf~~p~~~~~---------lvev----------v~~~~t~~~~~-~~~~~~~~~~Gk~----pv~v~~d~p--gfi~ 192 (287)
T PRK08293 139 LALHFANEIWKNN---------TAEI----------MGHPGTDPEVF-DTVVAFAKAIGMV----PIVLKKEQP--GYIL 192 (287)
T ss_pred EEEcCCCCCCcCC---------eEEE----------eCCCCCCHHHH-HHHHHHHHHcCCe----EEEecCCCC--CHhH
Confidence 3346777754221 1222 22233355544 4555555444311 1122 2222 2455
Q ss_pred HHHHHHHHHHH---HHcCCCCCCCCchhHHHHH
Q 007156 573 AHIAAEVAAKA---YELGLATRLPPPKDLVKYA 602 (615)
Q Consensus 573 ~~VA~aVa~~A---~~~GlA~~~~~~~dl~~~i 602 (615)
.+|-.++...| +++|+|+ ++|+....
T Consensus 193 nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 193 NSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 55666665555 4589885 45555443
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.31 E-value=0.1 Score=50.66 Aligned_cols=54 Identities=30% Similarity=0.441 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 334 TASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 334 TAaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+.+++.+..+++..|.++++.+++++|+ |..|..++..+... | .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 677777888888888899999999999997 99998888887642 3 478888775
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.96 E-value=0.094 Score=56.81 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=63.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc----ccCCCCCHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EHEPVKELV 428 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~----~~~~~~~L~ 428 (615)
+...+++|+|+|.+|.++++.+.. .|. ++.++|++ ..| +......|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999998864 252 58889874 111 2222222221 111123578
Q ss_pred HHHhccCCcEEEEccCC-----CCCCCHHHHHHHHccCCCcEEEecCC
Q 007156 429 DAVNAIKPTILIGTSGQ-----GRTFTKEVVEAMASLNEKPIIFSLSN 471 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~-----~g~Fteevv~~Ma~~~erPIIFaLSN 471 (615)
+.++. .|++|.+... +.++|++.++.|. .+.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 9999988632 4468999999984 5678887774
No 47
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.90 E-value=0.35 Score=54.55 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=75.1
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
-||+--++ -+.+|.++..|.+.+++|+|.|..|.++|+.+.. .|. +++++|++-. +. +.
T Consensus 234 ~G~~~s~~---d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV~e~dp~----~a--~~ 292 (476)
T PTZ00075 234 YGCRHSLI---DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVVTEIDPI----CA--LQ 292 (476)
T ss_pred HHHHHHHH---HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCch----hH--HH
Confidence 45544444 4445777899999999999999999999999864 253 5777766411 10 11
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 472 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 472 (615)
... +.-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+..
T Consensus 293 A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~ 343 (476)
T PTZ00075 293 AAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHF 343 (476)
T ss_pred HHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCC
Confidence 000 11112468888886 99999988888899999999995 44566555554
No 48
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.87 E-value=0.069 Score=55.62 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=55.7
Q ss_pred HHHHHHHHhCC--CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc
Q 007156 341 GLISAMKFLGG--SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 418 (615)
Q Consensus 341 gll~Alr~~g~--~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA 418 (615)
|++.+++..+. ++++.+++++|||.||-+|+..|.+ .|. ++|+++++. .+|...|.+ .|.
T Consensus 109 G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt----~~ka~~La~---~~~ 170 (282)
T TIGR01809 109 GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN----PDKLSRLVD---LGV 170 (282)
T ss_pred HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHHHHHHHH---Hhh
Confidence 45555555453 5788999999999999888877754 364 789999884 233222321 121
Q ss_pred ccc--CCCC---CHHHHHhccCCcEEEEccCCCCCCCHHH
Q 007156 419 HEH--EPVK---ELVDAVNAIKPTILIGTSGQGRTFTKEV 453 (615)
Q Consensus 419 ~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Fteev 453 (615)
... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 171 QVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred hcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 100 0111 2333343 4899999988775444443
No 49
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.68 E-value=0.061 Score=45.98 Aligned_cols=95 Identities=15% Similarity=0.275 Sum_probs=63.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lv-D~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+.+++.++.|..... ..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQAT-ADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEEE-SEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccccc-cCChHHhhcc--
Confidence 789999999999999988763 54 34678865 553 2234444434321100 1268899996
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNP 472 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNP 472 (615)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 66655 4566788888667788999988886
No 50
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.47 E-value=0.24 Score=53.59 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH-H
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV-D 429 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~-e 429 (615)
.+|++.+++++|||..|--+|+.|.. .|. ++|+++.+.-. + .+|.. +. +
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~--------~~~~~-------~~~~ 219 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T--------LPYRT-------VVRE 219 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c--------cchhh-------hhhh
Confidence 56999999999999998877777765 354 68999888631 1 22221 10 1
Q ss_pred HHh-ccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCC
Q 007156 430 AVN-AIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 430 ~V~-~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts 474 (615)
++. ..+.||+|-. +++.-.++.+.++.. -+| ++|=||+|-.
T Consensus 220 ~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~r-~~iDLAvPRd 265 (338)
T PRK00676 220 ELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PDR-IVFDFNVPRT 265 (338)
T ss_pred hhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cCc-EEEEecCCCC
Confidence 121 1368999964 344446777766542 224 9999999984
No 51
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.44 E-value=0.21 Score=48.87 Aligned_cols=120 Identities=20% Similarity=0.310 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc
Q 007156 333 GTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 412 (615)
Q Consensus 333 GTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~ 412 (615)
||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+=+ .-++.
T Consensus 4 G~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~DPi------~alqA 62 (162)
T PF00670_consen 4 GTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEIDPI------RALQA 62 (162)
T ss_dssp HHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSHH------HHHHH
T ss_pred ccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECChH------HHHHh
Confidence 77777777776 5688999999999999999999999998653 5 46777776310 01211
Q ss_pred cchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc
Q 007156 413 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT 485 (615)
Q Consensus 413 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~ 485 (615)
+- +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+...+
T Consensus 63 ~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 63 AM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 11 22223579999986 99999999988899999999995 4555554442 236777766444
No 52
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.26 E-value=0.092 Score=54.03 Aligned_cols=127 Identities=21% Similarity=0.282 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHHHHHhCCC-CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 333 GTASVVLAGLISAMKFLGGS-LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 333 GTAaVvLAgll~Alr~~g~~-L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
-||-=|..++-.+++..+.. +++.|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|++...-+.+
T Consensus 9 aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gld~~ 77 (244)
T PF00208_consen 9 ATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGLDVE 77 (244)
T ss_dssp HHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEEHHH
T ss_pred chHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCchHH
Confidence 46777788888889986766 9999999999999999999999763 52 445667999988875421122
Q ss_pred ccchhhccccCCCCCH-----------HH--HHhccCCcEEEEccCCCCCCCHHHHH-HHHccCCCcEEEecCC-CC
Q 007156 412 HFKKPWAHEHEPVKEL-----------VD--AVNAIKPTILIGTSGQGRTFTKEVVE-AMASLNEKPIIFSLSN-PT 473 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L-----------~e--~V~~vkPtvLIG~S~~~g~Fteevv~-~Ma~~~erPIIFaLSN-Pt 473 (615)
...+...+.......+ .+ .+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+| |+
T Consensus 78 ~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~p~ 151 (244)
T PF00208_consen 78 ELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSSSB
T ss_pred HHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcchhc
Confidence 2111111111101111 11 4555799999988 557899999998 774 34789999999 54
No 53
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.25 E-value=0.098 Score=53.46 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=79.8
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc--cCCCCCHHHHHhcc
Q 007156 358 FLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 434 (615)
Q Consensus 358 iv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~v 434 (615)
|.|+|| |..|.++|..|+.. |. .....++|+|.+.-..+....+|.+....+ .. -.-..++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 579999 99999999887652 41 123689999986411111111243333332 11 1113567888987
Q ss_pred CCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc--CCcEEEeeCC
Q 007156 435 KPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 497 (615)
Q Consensus 435 kPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT--~GraifASGS 497 (615)
.|++|=+.+.++. .-+++.+.|.++|..-+++-.|||. .....-+++++ .-.-+|++|.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9988866555432 3568889999999999999999998 34444555553 2344667664
No 54
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.13 E-value=0.09 Score=52.12 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++|.+.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478999999999999999999999764 65 799999997
No 55
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.99 E-value=0.12 Score=57.17 Aligned_cols=125 Identities=16% Similarity=0.302 Sum_probs=75.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHH-hcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccC-C-----CCCHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-P-----VKELV 428 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~-~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~-~-----~~~L~ 428 (615)
.||+|+||||. -..+++ ..+.+ ...+ ....|||+|.+- ..|-+.+...-+.+.+... + ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 344444 44433 2333 247899999862 2221111111122222211 1 25799
Q ss_pred HHHhccCCcEEEEccCCCCC----C------------------------------CHHHHHHHHccCCCcEEEecCCCCC
Q 007156 429 DAVNAIKPTILIGTSGQGRT----F------------------------------TKEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~----F------------------------------teevv~~Ma~~~erPIIFaLSNPts 474 (615)
||++. +|.+|=.-.+||. . =.++++.|.++|..-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99987 7877755555541 1 1378888999999999999999983
Q ss_pred cCCCCHHHHhcccCCcEEEeeC
Q 007156 475 QSECTAEEAYTWSQGRAIFASG 496 (615)
Q Consensus 475 ~aEctpedA~~wT~GraifASG 496 (615)
+..+-+++++ ..-+|.+|
T Consensus 149 ---ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 149 ---IVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred ---HHHHHHHHhc-cCCEEeeC
Confidence 4455566677 44466554
No 56
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.97 E-value=0.56 Score=49.71 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++..++..+.+|+..+++++|-|. .|.-+|.||.. .| ..+.+|+++
T Consensus 140 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~--------------- 192 (285)
T PRK10792 140 PCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF--------------- 192 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC---------------
Confidence 456778888899999999999999999998 99999999864 24 357777664
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 470 (615)
.++|.+.+++ +|++|-..+.++.|+.++|+ +.-+|+=..
T Consensus 193 ---------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ---------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ---------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888887 99999999999999999886 566776555
No 57
>PRK05086 malate dehydrogenase; Provisional
Probab=93.93 E-value=0.32 Score=51.55 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=67.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc-cCCCCCHHHHHhc
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNA 433 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~ 433 (615)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+.. ....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~~-~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHIP-TAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcCC-CCceEEEeCCCCHHHHcCC
Confidence 38999999 99999999887432 122 257899997522 111100122210 00000 0012467788876
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCC
Q 007156 434 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 434 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
.|++|=+.+.. |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888666653 21 4568999999999999999999998
No 58
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.33 E-value=0.34 Score=51.30 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++.=++..+.+++..++|++|.| ..|.-+|.+|.. .| ..+.+++++
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~g-------AtVtv~hs~--------------- 190 (285)
T PRK14191 138 PATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AG-------ASVSVCHIL--------------- 190 (285)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CEEEEEeCC---------------
Confidence 45667788888889999999999999999 999999999964 24 345666442
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 ---------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 ---------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred ---------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 0246788887 99999999999999999985
No 59
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.25 E-value=0.8 Score=43.62 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchh
Q 007156 337 VVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP 416 (615)
Q Consensus 337 VvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~ 416 (615)
.+..|++..++..|.+++.++|+++|.+.. +++-|...+.+ +| ..+..+|++.
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~g-------atV~~~~~~t---------------- 62 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DG-------ATVYSCDWKT---------------- 62 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CC-------CEEEEeCCCC----------------
Confidence 567888899999999999999999998754 44444444433 34 3577777631
Q ss_pred hccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 417 WAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 417 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
++|.+++++ +|++|-..+.++.|+.|+|+
T Consensus 63 --------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 --------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred --------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 257888987 99999999999999999987
No 60
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.24 E-value=1.3 Score=45.43 Aligned_cols=38 Identities=24% Similarity=0.415 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468889999999999999999999764 75 799999997
No 61
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.19 E-value=0.18 Score=50.25 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=67.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCC--CCCHH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELV 428 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~ 428 (615)
.+|++.||+++|+|..|..||..|+.+ |+ +++.++|.+=+ .. .+|+.. ..+..+... ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 467899999999999999999999764 65 78999999722 22 235542 222211111 12467
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE-ecCCCCCcCCC
Q 007156 429 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTSQSEC 478 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPts~aEc 478 (615)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77888888865443 233567776665432 234555 55677655443
No 62
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.97 E-value=0.24 Score=52.62 Aligned_cols=127 Identities=15% Similarity=0.277 Sum_probs=78.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccC-CCCCHHHHHhc
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNA 433 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~e~V~~ 433 (615)
..||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+... ..++. +.+++
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~ 73 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD 73 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC
Confidence 3599999999999999998764 365 3679999974211111111233322 2211100 11344 45665
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc--CCcEEEeeCC
Q 007156 434 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 497 (615)
Q Consensus 434 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT--~GraifASGS 497 (615)
.|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++....+++++ +-+-+|++|.
T Consensus 74 --adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt 148 (315)
T PRK00066 74 --ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGT 148 (315)
T ss_pred --CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCc
Confidence 9999877665421 1146788888899999999999998 34445566654 2233666664
Q ss_pred C
Q 007156 498 P 498 (615)
Q Consensus 498 P 498 (615)
-
T Consensus 149 ~ 149 (315)
T PRK00066 149 S 149 (315)
T ss_pred h
Confidence 3
No 63
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.93 E-value=0.65 Score=49.77 Aligned_cols=107 Identities=22% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhh-ccccCCCCCHHHH
Q 007156 353 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKELVDA 430 (615)
Q Consensus 353 L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~f-A~~~~~~~~L~e~ 430 (615)
++-.||+|.|| |..|..+|..|+. .|+ ...+.|+|.+ .. .+-.-+|.+....+ -+...+..+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 44569999999 9999999987752 243 3689999993 21 11111233322110 0011111334788
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCC
Q 007156 431 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 887 8988755555322 4468899999999999999999999
No 64
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.83 E-value=0.38 Score=50.50 Aligned_cols=126 Identities=15% Similarity=0.209 Sum_probs=76.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc-CCCCCHHHHHhccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~e~V~~vk 435 (615)
||.|+|+|.+|..+|..|+. .|+ ..+|+++|++-=..++-..+|++......... -...+.+ .++ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~-~l~--~ 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS-DCK--D 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH-HhC--C
Confidence 89999999999999998764 254 25799999852221111112322111000000 0113343 455 4
Q ss_pred CcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC--CcEEEeeCCC
Q 007156 436 PTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSP 498 (615)
Q Consensus 436 PtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~--GraifASGSP 498 (615)
.|++|=+.+.+.. +=+++.+.|.+++..-+|+-.|||.. +...-++++++ -+-+|++|.-
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999988876521 11577788888999999999999983 44555555431 1346777654
No 65
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.81 E-value=1.5 Score=49.26 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=68.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc------------chhhccc--c
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF------------KKPWAHE--H 421 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~------------k~~fA~~--~ 421 (615)
.||-|+|+|..|.+||..++.+ |. +++++|..- +..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPHP----EAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCCH----HHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999999753 54 688888731 110111100 0001110 1
Q ss_pred CCCCCHHHHHhccCCcEEEEccCCCCC-CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcc--cCCcEEEeeCCC
Q 007156 422 EPVKELVDAVNAIKPTILIGTSGQGRT-FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAIFASGSP 498 (615)
Q Consensus 422 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~w--T~GraifASGSP 498 (615)
....++.|+++. .|++| .+.+... +.+++.+.+.+..+.-.|+..| |+-.+ +++.-+. ..|+++++ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~Ss--Tsgi~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSS--TSGFL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEc--CCCCC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899987 88888 5554432 4555666666555555666554 32222 3333222 24555554 58
Q ss_pred CCCcc
Q 007156 499 FDPFE 503 (615)
Q Consensus 499 F~pV~ 503 (615)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88774
No 66
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.24 E-value=0.31 Score=51.17 Aligned_cols=49 Identities=33% Similarity=0.459 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|++.+++..+.++++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4667777777888899999999999998887766653 364 789999984
No 67
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=92.23 E-value=2.4 Score=47.18 Aligned_cols=151 Identities=24% Similarity=0.239 Sum_probs=104.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHhCccccc---------------------------------------------ccchHHH
Q 007156 304 RAIGQEYAELLHEFMTAVKQNYGERILI---------------------------------------------QGTASVV 338 (615)
Q Consensus 304 Ri~g~ey~~~vdeFv~Av~~~~gp~vli---------------------------------------------QGTAaVv 338 (615)
..+..|-.+|...|++++.+.-||...| --||==+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 3567788889999999999999988777 1222222
Q ss_pred HHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchh--
Q 007156 339 LAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-- 416 (615)
Q Consensus 339 LAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~-- 416 (615)
.-+.-.|++..|.+|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|.|++.. .|+..+..
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 233337888888889999999999999999999888653 52 5677789999888763 34422221
Q ss_pred ---hccc-----cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC-CCC
Q 007156 417 ---WAHE-----HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN-PTS 474 (615)
Q Consensus 417 ---fA~~-----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN-Pts 474 (615)
+.+- .+...+ |.+-.+..||||=+.. ++.+|++-.+.+.+ + +|.=-+| |++
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t 317 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT 317 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC
Confidence 1110 111112 3344467899997666 66999999988853 2 8888888 763
No 68
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.20 E-value=0.99 Score=45.63 Aligned_cols=89 Identities=21% Similarity=0.326 Sum_probs=63.1
Q ss_pred CCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 350 GGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 350 g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
|.+++.++++++|-+. .|.-+|.||.. .| ..+++||++|.....+...+.+.+.+. .+...+|.
T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~~~~~~~hs~t~~---~~~~~~l~ 121 (197)
T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFTRGESIRHEKHHV---TDEEAMTL 121 (197)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccccccccccccccc---cchhhHHH
Confidence 4489999999999875 56777777754 24 468999999988866643332111100 01112488
Q ss_pred HHHhccCCcEEEEccCCCCC-CCHHHHH
Q 007156 429 DAVNAIKPTILIGTSGQGRT-FTKEVVE 455 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~-Fteevv~ 455 (615)
|.+++ +|++|-.-+.++. ++.|+|+
T Consensus 122 ~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 122 DCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred HHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 98987 9999999999997 8999997
No 69
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=92.07 E-value=0.41 Score=53.11 Aligned_cols=125 Identities=18% Similarity=0.326 Sum_probs=75.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcCeEEEEccCCccccCCccCccccchhhcccc-CC-----CCCHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQT-NMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELV 428 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~-Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~~-----~~~L~ 428 (615)
.||+|+||||+ -.-.|+..+.+.. .++ ...|||+|-+ .+|-+.+...-+.+++.. .+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4444444444322 342 4789999975 444222222223333221 12 25788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCCC--------HHHHHHHHccCCCcEEEecCCCCC
Q 007156 429 DAVNAIKPTILIGTS--------------------------GQGRTFT--------KEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 429 e~V~~vkPtvLIG~S--------------------------~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPts 474 (615)
||++. +|..|-.- |+||.|. .++++.|.++|..-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99887 77766332 3334443 38899999999999999999998
Q ss_pred cCCCCHHHHhcccCCcEEEeeC
Q 007156 475 QSECTAEEAYTWSQGRAIFASG 496 (615)
Q Consensus 475 ~aEctpedA~~wT~GraifASG 496 (615)
.-+ -+-+++++...-+|.+|
T Consensus 147 -di~-t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEV-TEAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHH-HHHHHHhCCCCcEEEEC
Confidence 222 23344556444456554
No 70
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=91.97 E-value=1.2 Score=49.05 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
+..|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|... .. .
T Consensus 93 ~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a-----~G~-------~V~~~Dp~~------~~-~- 152 (381)
T PRK00257 93 RGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRG-----LGW-------KVLVCDPPR------QE-A- 152 (381)
T ss_pred HHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECCcc------cc-c-
Confidence 344555788899999999999999999999999999999999864 364 678888631 00 0
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEE-cc-------CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHH
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIG-TS-------GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEA 483 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG-~S-------~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA 483 (615)
+ ......+|.|+++. .|+++= +. ...++|+++.+..|. +..++.=.|. -++--++|
T Consensus 153 ~-------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~A 216 (381)
T PRK00257 153 E-------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQA 216 (381)
T ss_pred c-------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHH
Confidence 0 01123579999886 887761 11 124799999999995 5677776554 45555554
Q ss_pred hcc--cCCcEEEeeCCCC--CCcccCCeeeCcCCCccccccchhhHHHHHcCCc
Q 007156 484 YTW--SQGRAIFASGSPF--DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAI 533 (615)
Q Consensus 484 ~~w--T~GraifASGSPF--~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~ 533 (615)
+.. ..|+...|-=-=| +|. .+.. =...|+.+-|=|+-....++.+
T Consensus 217 L~~aL~~g~i~~a~LDV~e~EP~-~~~~----L~~~nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 217 LREALLSGEDLDAVLDVWEGEPQ-IDLE----LADLCTIATPHIAGYSLDGKAR 265 (381)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCC-CChh----hhhCCEEEcCccccCCHHHHHH
Confidence 421 2454333211111 121 1111 1123788888887555555433
No 71
>PRK08605 D-lactate dehydrogenase; Validated
Probab=91.92 E-value=0.82 Score=48.83 Aligned_cols=111 Identities=14% Similarity=0.194 Sum_probs=70.7
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 349 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 349 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
.|..|.+.+|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . ... ..++ ....+|.
T Consensus 140 ~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~ 195 (332)
T PRK08605 140 LSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIE 195 (332)
T ss_pred ccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHH
Confidence 35679999999999999999999999533 243 688888742 1 101 1111 1235799
Q ss_pred HHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcc-cCCcE
Q 007156 429 DAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW-SQGRA 491 (615)
Q Consensus 429 e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~w-T~Gra 491 (615)
|+++. .|+++=.- ...++|+++.++.|. +..++.=+|. -.+..-++.+++ ..|+.
T Consensus 196 ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR---G~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 196 EAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR---GSLVDTKALLDALDNGLI 255 (332)
T ss_pred HHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC---CcccCHHHHHHHHHhCCe
Confidence 99987 89888542 123577888888884 5667776664 334444433333 24553
No 72
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.84 E-value=0.28 Score=52.72 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 478899999999999999999999875 65 7999999973
No 73
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.80 E-value=0.76 Score=52.27 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc---------------ccchh
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ---------------HFKKP 416 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~---------------~~k~~ 416 (615)
.....|++|+|||.+|++.+..... .| | +++.+|.. ..|.+... .....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccc
Confidence 4458999999999999888766643 35 3 48888874 11111000 01112
Q ss_pred hccccCCCCCHHHHH-----hcc-CCcEEEEccCCCC-----CCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCH
Q 007156 417 WAHEHEPVKELVDAV-----NAI-KPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTA 480 (615)
Q Consensus 417 fA~~~~~~~~L~e~V-----~~v-kPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctp 480 (615)
|++... .++.+.. +.+ +.|++|.+++.+| +++++.++.|. ..-+|.=++.+. ..+|++.
T Consensus 226 ya~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 232211 1222221 111 4999999999866 67999999996 455666677653 3345553
No 74
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=91.73 E-value=0.58 Score=47.08 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=61.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc-ccC--CCCCH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHE--PVKEL 427 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~--~~~~L 427 (615)
.+|.+.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+- -|.. +.. ....+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDV-VELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCE-EcCc---cccccc-ccChhhCCChHHHHH
Confidence 468899999999999999999999764 75 7999999972 2222 354221 1221 111 11346
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
.+.++...|++=|=... .-++++-+...-+. -.=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~~--~~i~~~~~~~~~~~-~DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAYN--ERLDAENAEELIAG-YDLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEec--ceeCHHHHHHHHhC-CCEEEEcCCCHH
Confidence 77777778876443222 23455544443221 122444666665
No 75
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.44 E-value=0.42 Score=50.15 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 555666544446778899999999999999887764 364 789999984
No 76
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.41 E-value=0.31 Score=46.18 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=51.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch--hhccc---cCC---CCCHH
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK--PWAHE---HEP---VKELV 428 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~--~fA~~---~~~---~~~L~ 428 (615)
||.|+|||+.|+++|..+... | .++.|.+++.-.. +.++..+. .|... ... ..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999999763 4 5777777763111 11222111 11110 111 25799
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccC
Q 007156 429 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLN 461 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~ 461 (615)
+++++ +|++| +..+. -+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhcc
Confidence 99986 77766 33322 45789999998744
No 77
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.37 E-value=0.12 Score=48.53 Aligned_cols=104 Identities=22% Similarity=0.361 Sum_probs=65.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~-GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
||.|+|| |..|..+|-+|+.. |+ -++|.|+|.+ ... ++..-+|.+..-+.-++..-..+..+.++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~-~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKA-EGEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHH-HHHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccc-eeeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 55 3569999997 211 111112332221111111111245566775
Q ss_pred CCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCC
Q 007156 435 KPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
.|++|=+.+.+ |- +-+++.+.+++++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998665543 21 2246777888899999999999997
No 78
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.37 E-value=0.37 Score=52.09 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=33.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999764 75 789999986
No 79
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.13 E-value=0.9 Score=48.18 Aligned_cols=82 Identities=17% Similarity=0.345 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGEA-GTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGsA-G~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.-++..+.++++.+++++|.|.- |.-+|.+|.. .| ..+.+|+++
T Consensus 139 PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVt~~hs~--------------- 191 (285)
T PRK14189 139 PCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AG-------ATVTICHSK--------------- 191 (285)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEecCC---------------
Confidence 4566788888899999999999999999998 9999999864 24 356665442
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ---------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ---------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ---------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999998775
No 80
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.06 E-value=0.79 Score=44.60 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 65 789999997
No 81
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.04 E-value=0.91 Score=48.43 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=74.8
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc---CCCCCHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAV 431 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~V 431 (615)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+.... ...+++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999998754 365 24999997532222111112211 1111111 112466 567
Q ss_pred hccCCcEEEEccCCCCCC-------------------CHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC--Cc
Q 007156 432 NAIKPTILIGTSGQGRTF-------------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GR 490 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~F-------------------teevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~--Gr 490 (615)
+. .|++|=+.+.++.- -.++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 65 89998666554321 2478888888997778999999982 22334444442 13
Q ss_pred EEEeeCC
Q 007156 491 AIFASGS 497 (615)
Q Consensus 491 aifASGS 497 (615)
-+|++|.
T Consensus 148 rviGlgt 154 (321)
T PTZ00082 148 KVCGMAG 154 (321)
T ss_pred hEEEecC
Confidence 4677663
No 82
>PLN02928 oxidoreductase family protein
Probab=91.00 E-value=2.3 Score=45.83 Aligned_cols=121 Identities=13% Similarity=0.172 Sum_probs=75.8
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc----hhhccccCCCC
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAHEHEPVK 425 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k----~~fA~~~~~~~ 425 (615)
+..|.++++.|+|.|..|..+|+.+.. .|+ +++.+|+.. .......+. ++ ..+........
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~a-----fG~-------~V~~~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 218 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRP-----FGV-------KLLATRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHE 218 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhh-----CCC-------EEEEECCCC--Chhhhhhhc-cccccccccccccCccc
Confidence 567999999999999999999999864 264 688888742 010000000 00 01111111346
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc-c-cCCcEEEe
Q 007156 426 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAIFA 494 (615)
Q Consensus 426 ~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~-w-T~GraifA 494 (615)
+|.|+++. .|+++-.- ...++|+++.+..|. +..+|.=.|. .++--|+|+- + ..|+.-.|
T Consensus 219 ~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lINvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 219 DIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVNIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred CHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 89999997 89998652 234799999999995 5667776554 5555555432 1 35665444
No 83
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.80 E-value=1.9 Score=47.44 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=82.7
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
+..|=-+++.+++..|..|..|.+.++.|+|.|..|-.+|+.+.. .|+ ++..+|.. +.+ .
T Consensus 93 ~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a-----~G~-------~V~~~dp~------~~~--~ 152 (378)
T PRK15438 93 IAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEA-----LGI-------KTLLCDPP------RAD--R 152 (378)
T ss_pred hHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEECCc------ccc--c
Confidence 555556788888888888999999999999999999999999964 264 67788852 111 0
Q ss_pred ccchhhccccCCCCCHHHHHhccCCcEEEE---ccC-----CCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHH
Q 007156 412 HFKKPWAHEHEPVKELVDAVNAIKPTILIG---TSG-----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEA 483 (615)
Q Consensus 412 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S~-----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA 483 (615)
. ......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|++=.|. -+.-=|+|
T Consensus 153 ~-------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~A 216 (378)
T PRK15438 153 G-------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTA 216 (378)
T ss_pred c-------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHH
Confidence 0 00123579999976 898871 121 34689999999995 6677775553 55555555
Q ss_pred h
Q 007156 484 Y 484 (615)
Q Consensus 484 ~ 484 (615)
+
T Consensus 217 L 217 (378)
T PRK15438 217 L 217 (378)
T ss_pred H
Confidence 4
No 84
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.71 E-value=0.39 Score=51.64 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 568899999999999999999999764 65 799999996
No 85
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.65 E-value=0.58 Score=48.93 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|++.+++..+..++++++||+|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 111 ~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 111 LGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4566677766667888999999999777777666543 364 679999884
No 86
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.63 E-value=1.2 Score=47.40 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++..++-.+.+|+..++|++|.+. -|.-+|.+|.. .| ..+.+|+++
T Consensus 145 PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~--------------- 197 (287)
T PRK14176 145 PCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF--------------- 197 (287)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc---------------
Confidence 456778888889999999999999999998 89999999864 24 356777652
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 198 ---------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ---------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257788886 99999999999999999875
No 87
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.60 E-value=1.2 Score=47.23 Aligned_cols=126 Identities=19% Similarity=0.316 Sum_probs=76.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc---CCCCCHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 430 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 430 (615)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+--...+..-++.+.. .+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~~-~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHFS-TLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhhc-cccCCCeEEEeCCCHH-H
Confidence 34699999999999999988764 354 259999985211111111122221 111111 1124565 6
Q ss_pred HhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC--CcEEEe
Q 007156 431 VNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFA 494 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~--GraifA 494 (615)
+++ .|++|=+.+.+.. +-+++.+.|.++|..-+++=.|||. ......++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~---di~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL---DCMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH---HHHHHHHHHhhCCCcccEEE
Confidence 666 8998866655431 2348899999999999788789998 233445555542 134777
Q ss_pred eCC
Q 007156 495 SGS 497 (615)
Q Consensus 495 SGS 497 (615)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 764
No 88
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.59 E-value=0.84 Score=48.29 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..+.+++..+++++|-+ .-|.-+|.++... | ..+..++++
T Consensus 133 PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~--------------- 185 (279)
T PRK14178 133 PCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK--------------- 185 (279)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC---------------
Confidence 45667788888889999999999999999 8888888887542 3 356666653
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ---------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ---------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ---------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0358899987 99999999988999999973
No 89
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.32 E-value=1.4 Score=47.16 Aligned_cols=110 Identities=19% Similarity=0.183 Sum_probs=69.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--cccCCccCccccchhhccccCCCCCHHHHHhc
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 433 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL--i~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 433 (615)
||.|.|| |..|..+|..|+. .|+-.|+-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 8999999 9999999987764 35532223347999998741 11111112443332332221111456788887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccC-CCcEEEecCCCC
Q 007156 434 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLN-EKPIIFSLSNPT 473 (615)
Q Consensus 434 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~-erPIIFaLSNPt 473 (615)
.|+.|=+.+.+ |- +-+++++.|++++ ..-||+-.|||.
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555543 31 1257788888894 999999999998
No 90
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.28 E-value=1.3 Score=47.43 Aligned_cols=91 Identities=13% Similarity=0.276 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++.=++..|.+++.++|+|+|.| ..|..+|.+|... | ..+++++++ .
T Consensus 140 PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t------ 193 (301)
T PRK14194 140 PCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S------ 193 (301)
T ss_pred CCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C------
Confidence 45667788888899999999999999996 9999999999752 5 467777653 0
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 470 (615)
.++.|++++ .|++|=.-+.++.+++++++ +.-||.=+|
T Consensus 194 ----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999988888888888743 445666555
No 91
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.20 E-value=0.71 Score=47.84 Aligned_cols=87 Identities=23% Similarity=0.367 Sum_probs=53.8
Q ss_pred HHHHHHHHH-hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc
Q 007156 340 AGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 418 (615)
Q Consensus 340 Agll~Alr~-~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA 418 (615)
.|++++++. .+..+.+.+++++|||.+|-+++..|.. .|+ ++|+++++. .++ .......+.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~~ 168 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLFG 168 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 456667664 5678999999999999888888887764 354 689999885 122 222222221
Q ss_pred ccc-CCC-CCHHHHHhccCCcEEEEccCCC
Q 007156 419 HEH-EPV-KELVDAVNAIKPTILIGTSGQG 446 (615)
Q Consensus 419 ~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 446 (615)
... -+. .++.+.+. +.|++|-++..+
T Consensus 169 ~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 169 ALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hccceeecccchhccc--cCCEEEECCcCC
Confidence 110 011 12334444 489999887755
No 92
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.11 E-value=1 Score=49.79 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=72.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc------CCCCCHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH------EPVKELVDA 430 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~------~~~~~L~e~ 430 (615)
||.|+|||+.|.+.+- +..+..... .+..+++|+|.+- ++.+.+...-+.+.... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 111111111 1235899999752 22111111111111111 113578899
Q ss_pred HhccCCcEEEEccCCC---------------CCCC---------------------HHHHHHHHccCCCcEEEecCCCCC
Q 007156 431 VNAIKPTILIGTSGQG---------------RTFT---------------------KEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~---------------g~Ft---------------------eevv~~Ma~~~erPIIFaLSNPts 474 (615)
++. +|++|=.-..+ |+|. .++.+.|.++|.+.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 88777544322 1121 27777777888999999999998
Q ss_pred cCCCCHHHHhcccCCcEEEeeC-CC
Q 007156 475 QSECTAEEAYTWSQGRAIFASG-SP 498 (615)
Q Consensus 475 ~aEctpedA~~wT~GraifASG-SP 498 (615)
..+ .+-+++.++ .-++.+| +|
T Consensus 149 -~i~-t~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AEL-TWALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHH-HHHHHHhCC-CCEEEECCcH
Confidence 332 233446665 5578877 44
No 93
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.10 E-value=1.1 Score=46.48 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999998653 53 68888863
No 94
>PRK08223 hypothetical protein; Validated
Probab=90.08 E-value=1.2 Score=47.31 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=33.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i~lvD~D 60 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKFTIADFD 60 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeEEEEeCC
Confidence 468899999999999999999999875 75 789999987
No 95
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.06 E-value=5.3 Score=41.36 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998653 53 68999975
No 96
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.04 E-value=0.61 Score=48.81 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 53 68888875
No 97
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.96 E-value=2.7 Score=44.08 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..||.|+|+|..|.++|..+... | .++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 45899999999999999999764 4 357777764
No 98
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.89 E-value=2.8 Score=45.10 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHHHH------------------HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 007156 332 QGTASVVLAGLISAMK------------------FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKI 393 (615)
Q Consensus 332 QGTAaVvLAgll~Alr------------------~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i 393 (615)
+..|=-+++.+|+..| ..|..|.++++-|+|.|..|..+|+.+... |+ ++
T Consensus 101 ~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v 168 (324)
T COG0111 101 ISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KV 168 (324)
T ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eE
Confidence 4445556677777766 567789999999999999999999998653 65 68
Q ss_pred EEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHH
Q 007156 394 WLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMA 458 (615)
Q Consensus 394 ~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma 458 (615)
..+|+. ..+. ... ........+|.+.++. .|++.-.- ...|.++++-+..|.
T Consensus 169 ~~~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 169 IGYDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred EEECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 888883 1110 000 0111234679999987 99988542 224789999999994
No 99
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.84 E-value=0.53 Score=43.21 Aligned_cols=35 Identities=37% Similarity=0.596 Sum_probs=30.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 378999999999999999999875 65 899999997
No 100
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=89.82 E-value=2.3 Score=48.73 Aligned_cols=161 Identities=22% Similarity=0.201 Sum_probs=104.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--ccCCccCccccchhhccccCCCCCHHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 431 (615)
.+-.++|+|.|..|+|||.-++. .|+ ++.||+++-+- |++|..+|=+--..|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 56689999999999999998865 487 58899988776 556655566666666643 1222133555
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCC--CcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMASLNE--KPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~ 509 (615)
.. .+++..+|-|+- -|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 43 377788876653 44556554310
Q ss_pred CcCCCccccccchhhHHHHHcCC-ccc--CHHHHHHHHHHHHccCCccCCCCCCccCCCCChhhhHHHHHHHHHHHHHHc
Q 007156 510 VPGQANNAYIFPGLGLGLIMSGA-IRV--HDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAEVAAKAYEL 586 (615)
Q Consensus 510 ~p~Q~NN~yiFPGiglG~l~s~a-~~I--td~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ir~vs~~VA~aVa~~A~~~ 586 (615)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+..||.-.. . -+ +...++++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-d-da-RLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-D-DA-RLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-c-hH-HHHHHHHHHHHhc
Confidence 0124678899999999993 222 22233335666666676666666888996553 2 22 5566888888888
Q ss_pred C
Q 007156 587 G 587 (615)
Q Consensus 587 G 587 (615)
|
T Consensus 178 G 178 (532)
T COG0578 178 G 178 (532)
T ss_pred c
Confidence 7
No 101
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=89.78 E-value=1 Score=49.17 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=63.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCC--------ccCccccchhhcc---
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--------LESLQHFKKPWAH--- 419 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R--------~~~L~~~k~~fA~--- 419 (615)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. .+++-..|..-+.
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999764 65 78999999732 2111 0011111111111
Q ss_pred -cc-C---------CC--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007156 420 -EH-E---------PV--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 468 (615)
Q Consensus 420 -~~-~---------~~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 468 (615)
.. + .. .++.+.+++ .|++|.++.-. =+.-.|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 00 0 01 245556655 78888766532 25556667776677888886
No 102
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.71 E-value=0.76 Score=47.49 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=64.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch-------hhccc--------
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-------PWAHE-------- 420 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~-------~fA~~-------- 420 (615)
+||.|+|+|..|.+||..+... | -+++++|.+- . .++..+. ..++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIKQ----E---QLESAQQEIASIFEQGVARGKLTEAAR 62 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 4799999999999999998753 5 3688888741 1 1211110 00000
Q ss_pred ------cCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEe
Q 007156 421 ------HEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFA 494 (615)
Q Consensus 421 ------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifA 494 (615)
.....++.++++. .|++|=+-...-...+++++.+.++.....|++ ||.++ ..+++.-++.+-..=|.
T Consensus 63 ~~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 63 QAALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEE
Confidence 0112467778876 788874432221124455555555554444443 33322 44444444433222234
Q ss_pred eCCCCCCcc
Q 007156 495 SGSPFDPFE 503 (615)
Q Consensus 495 SGSPF~pV~ 503 (615)
...+|.||.
T Consensus 137 g~h~~~Pv~ 145 (288)
T PRK09260 137 AMHFFNPVH 145 (288)
T ss_pred EEecCCCcc
Confidence 445666663
No 103
>PRK15076 alpha-galactosidase; Provisional
Probab=89.69 E-value=0.94 Score=50.34 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=73.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc-cchhhccccC-----CCCCHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAHEHE-----PVKELVD 429 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~-~k~~fA~~~~-----~~~~L~e 429 (615)
.||.|+|||+.|.. ..++..+....++ +...++|+|.+- +|.+.... .+.-++.... -..++.+
T Consensus 2 ~KIaIIGaGsvg~~--~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFT--KNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhH--HHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 58999999998543 3333333221233 235899999752 22110000 0111111111 1257888
Q ss_pred HHhccCCcEEEEccCCCCCC-------------------------------------CHHHHHHHHccCCCcEEEecCCC
Q 007156 430 AVNAIKPTILIGTSGQGRTF-------------------------------------TKEVVEAMASLNEKPIIFSLSNP 472 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~g~F-------------------------------------teevv~~Ma~~~erPIIFaLSNP 472 (615)
+++. +|++|=..+++|.- =.|+++.|.++|..-+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8886 78777555554311 14778888899999999999999
Q ss_pred CCcCCCCHHHHhcccCCcEEEeeC-CCCC
Q 007156 473 TSQSECTAEEAYTWSQGRAIFASG-SPFD 500 (615)
Q Consensus 473 ts~aEctpedA~~wT~GraifASG-SPF~ 500 (615)
.. +..+-++.++ ..-+|.+| +|++
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 2222333553 34578887 6644
No 104
>PRK14851 hypothetical protein; Provisional
Probab=89.59 E-value=1.4 Score=51.92 Aligned_cols=122 Identities=12% Similarity=0.121 Sum_probs=78.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCc-------cCccccchhhccc---
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-------ESLQHFKKPWAHE--- 420 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~-------~~L~~~k~~fA~~--- 420 (615)
++|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|-+=+-.++-. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999999875 75 79999998733221110 0111122222211
Q ss_pred -cC----------CC--CCHHHHHhccCCcEEEEccCCCCCC-CHHHHHHHHccCCCcEEEecC----------CCCCcC
Q 007156 421 -HE----------PV--KELVDAVNAIKPTILIGTSGQGRTF-TKEVVEAMASLNEKPIIFSLS----------NPTSQS 476 (615)
Q Consensus 421 -~~----------~~--~~L~e~V~~vkPtvLIG~S~~~g~F-teevv~~Ma~~~erPIIFaLS----------NPts~a 476 (615)
.+ .+ .++.+.+++ .|++|-...-. .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 11 11 246666765 89988554321 12 344677778888999998754 665
Q ss_pred CCCHHHHhcccCC
Q 007156 477 ECTAEEAYTWSQG 489 (615)
Q Consensus 477 EctpedA~~wT~G 489 (615)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5778888888776
No 105
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.47 E-value=1.1 Score=48.54 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 568899999999999999999999764 75 799999997
No 106
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.42 E-value=0.76 Score=47.07 Aligned_cols=105 Identities=17% Similarity=0.222 Sum_probs=62.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc--ccC--CCCCH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHE--PVKEL 427 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~--~~~--~~~~L 427 (615)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+= |..+ +|+.+ .++. +.. ...-+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~-V~~s---NlnRq--~~~~~~diG~~Kae~~ 70 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDV-VCVS---NLNRQ--IHALLSTVGKPKVEVM 70 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCE-ECch---hhcch--hCcChhhCCCcHHHHH
Confidence 57889999999999999999999764 75 7999999872 2221 34322 2231 111 11245
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCc
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 475 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~ 475 (615)
.+-++.+.|++=|-... .-++++-+...-...-.=||-+.-|+..+
T Consensus 71 ~~~l~~inP~~~V~~~~--~~i~~~~~~~l~~~~~D~VvdaiD~~~~k 116 (231)
T cd00755 71 AERIRDINPECEVDAVE--EFLTPDNSEDLLGGDPDFVVDAIDSIRAK 116 (231)
T ss_pred HHHHHHHCCCcEEEEee--eecCHhHHHHHhcCCCCEEEEcCCCHHHH
Confidence 66677777776655433 24565544444321122355556666644
No 107
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.06 E-value=1 Score=46.88 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=72.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc--cCCCCCHHHHHhc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNA 433 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~ 433 (615)
.||.|+|||..|.++|..++. .|+ . .++++|.+-=..++...++.+........ .....+. ++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~ 70 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAG 70 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCC
Confidence 489999999999999998764 244 2 79999983111111000011110000000 0012356 45665
Q ss_pred cCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCC---cEEEeeC
Q 007156 434 IKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG---RAIFASG 496 (615)
Q Consensus 434 vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~G---raifASG 496 (615)
.|++|=+.+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ | +-+|++|
T Consensus 71 --aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~~~viG~g 144 (307)
T PRK06223 71 --SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPKNRVIGMA 144 (307)
T ss_pred --CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCcccEEEeC
Confidence 89888333322 2 12356777888899999888889998 22333444544 4 5688888
Q ss_pred CCCC
Q 007156 497 SPFD 500 (615)
Q Consensus 497 SPF~ 500 (615)
.-.+
T Consensus 145 t~ld 148 (307)
T PRK06223 145 GVLD 148 (307)
T ss_pred CCcH
Confidence 5443
No 108
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=89.03 E-value=0.91 Score=48.04 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=54.5
Q ss_pred HHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc
Q 007156 341 GLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA 418 (615)
Q Consensus 341 gll~Alr~~g--~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA 418 (615)
|++.+++-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++ +.+|.. +..+.|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR----t~~ra~---~La~~~~ 171 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR----TRERAE---ELADLFG 171 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC----CHHHHH---HHHHHhh
Confidence 5677777655 456689999999999999998888763 64 78999998 344432 2223333
Q ss_pred ccc-----CCCCCHHHHHhccCCcEEEEccCCC
Q 007156 419 HEH-----EPVKELVDAVNAIKPTILIGTSGQG 446 (615)
Q Consensus 419 ~~~-----~~~~~L~e~V~~vkPtvLIG~S~~~ 446 (615)
+.. ....++.+ .+ ..|++|=++..|
T Consensus 172 ~~~~~~~~~~~~~~~~-~~--~~dliINaTp~G 201 (283)
T COG0169 172 ELGAAVEAAALADLEG-LE--EADLLINATPVG 201 (283)
T ss_pred hccccccccccccccc-cc--ccCEEEECCCCC
Confidence 211 11122222 21 489999777655
No 109
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.00 E-value=1.2 Score=48.77 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 568899999999999999999999864 75 789999986
No 110
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=88.93 E-value=2.1 Score=45.58 Aligned_cols=104 Identities=12% Similarity=0.152 Sum_probs=62.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc----cCCCCCHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 429 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 429 (615)
...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+. .....++++
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~~g~~v~~~~~~~~ 190 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSLLGIDVTAATDPRA 190 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 346899999999998888877543 243 689988873 222 22232222211 112367899
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHHH
Q 007156 430 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 482 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctped 482 (615)
+++. .|++|-++... .+|+.++++. .-.|.++..-+ .+-|+.++-
T Consensus 191 av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 191 AMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred Hhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 9975 99999776432 3567666642 22444444322 246777655
No 111
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.87 E-value=0.93 Score=45.19 Aligned_cols=109 Identities=17% Similarity=0.319 Sum_probs=68.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc-CC-----CCCHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELVDA 430 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~~-----~~~L~e~ 430 (615)
||+|+||||+- ...++...+.....++ ...|+|+|.+ ..|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~--~~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTY--FPLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCC--HHHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHh--hHHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 79999999985 4556665555444453 4689999986 233221222333344322 12 2589999
Q ss_pred HhccCCcEEEEccCCC----------------------------CCCC--------HHHHHHHHccCCCcEEEecCCCCC
Q 007156 431 VNAIKPTILIGTSGQG----------------------------RTFT--------KEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~----------------------------g~Ft--------eevv~~Ma~~~erPIIFaLSNPts 474 (615)
++. +|.+|=.-.+| |.|. .|+.+.|.++|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 88887443333 2222 48889999999999999999998
Q ss_pred cCCCC
Q 007156 475 QSECT 479 (615)
Q Consensus 475 ~aEct 479 (615)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5555
No 112
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.86 E-value=1.4 Score=42.63 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=73.4
Q ss_pred HHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCC
Q 007156 346 MKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK 425 (615)
Q Consensus 346 lr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~ 425 (615)
....+..|.+++|.|+|.|..|..+|+++... |+ +++.+|+..-- - + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~-------~-~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKP-------E-E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHH-------H-H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCCh-------h-h---hcccccceee
Confidence 45667889999999999999999999999642 53 78888885220 0 0 1111111235
Q ss_pred CHHHHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc-c-cCCcEE
Q 007156 426 ELVDAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAI 492 (615)
Q Consensus 426 ~L~e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~-w-T~Grai 492 (615)
+|.|+++. .|+++=.- ...+.|+++.++.|. +.-++.-.| +.++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~a----RG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVA----RGELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESS----SGGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEecc----chhhhhhhHHHHHHhhccCc
Confidence 79999987 89887432 124799999999995 555666554 45555555432 2 356554
No 113
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.66 E-value=3 Score=44.64 Aligned_cols=102 Identities=23% Similarity=0.322 Sum_probs=68.2
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccC--CCCCHHHHHhc
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVNA 433 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~--~~~~L~e~V~~ 433 (615)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+ + ..+-.-+|++.. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987743 355 3689999998 3 222222355443 1111111 11346677887
Q ss_pred cCCcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCC
Q 007156 434 IKPTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 434 vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
.|++|=+.+.+ |- .-+++++.+.+++...+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666553 21 2246777888899999999999998
No 114
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=88.58 E-value=2.9 Score=44.76 Aligned_cols=135 Identities=19% Similarity=0.216 Sum_probs=80.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcC-eEEEEccCCcc--ccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRK-KIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk-~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
||.|+|| |..|..+|..|+.. |+--.+ .+ .+.|+|.+.-. .+...-+|.+...++........+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~-~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKD-QPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCC-CccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999888642 441000 11 69999984221 111111244443233211111125567787
Q ss_pred ccCCcEEEEccCCCCC--C------------CHHHHHHHHcc-CCCcEEEecCCCCCcCCCCHHHHhcccCC--cEEEee
Q 007156 433 AIKPTILIGTSGQGRT--F------------TKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 495 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~--F------------teevv~~Ma~~-~erPIIFaLSNPts~aEctpedA~~wT~G--raifAS 495 (615)
+ .|++|=+.+.+.- - =+++++.|+++ +..-||+-.|||. .+..--+++++.+ +-+|.|
T Consensus 75 ~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~ 149 (324)
T TIGR01758 75 D--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSA 149 (324)
T ss_pred C--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEE
Confidence 6 8888866665421 1 14677888888 4899999999998 4444455555532 227888
Q ss_pred CCCCCCc
Q 007156 496 GSPFDPF 502 (615)
Q Consensus 496 GSPF~pV 502 (615)
|.=.+..
T Consensus 150 gt~LDs~ 156 (324)
T TIGR01758 150 LTRLDHN 156 (324)
T ss_pred eeehHHH
Confidence 8655433
No 115
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.52 E-value=1.8 Score=43.05 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=59.4
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc---cc-c----CCCCCH
Q 007156 357 RFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---HE-H----EPVKEL 427 (615)
Q Consensus 357 riv~~G-AGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA---~~-~----~~~~~L 427 (615)
||.|+| +|.-|..+|..+.+. | .+++++|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999999652 4 467777763 111 211111111 00 0 011356
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCc
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQ 475 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~ 475 (615)
.++++. +|++| ++... ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788875 78776 44433 3457888888654344799999999854
No 116
>PRK07411 hypothetical protein; Validated
Probab=88.49 E-value=1.3 Score=48.50 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=34.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 578899999999999999999999875 75 799999987
No 117
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.24 E-value=3.7 Score=43.92 Aligned_cols=135 Identities=18% Similarity=0.216 Sum_probs=78.0
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--ccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
-||+|.|| |.-|..+|..|+.. |+--.+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 99999999988652 43100111379999985421 111111122211122111111257888898
Q ss_pred ccCCcEEEEccCCCCC--CC------------HHHHHHHHccC-CCcEEEecCCCCCcCCCCHHHHhcccCC--cEEEee
Q 007156 433 AIKPTILIGTSGQGRT--FT------------KEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFAS 495 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~--Ft------------eevv~~Ma~~~-erPIIFaLSNPts~aEctpedA~~wT~G--raifAS 495 (615)
+ +|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 6 9998866665421 23 56778888885 688999999997 3444455555422 112556
Q ss_pred CCCCC
Q 007156 496 GSPFD 500 (615)
Q Consensus 496 GSPF~ 500 (615)
|.=.+
T Consensus 153 gt~LD 157 (325)
T cd01336 153 LTRLD 157 (325)
T ss_pred eehHH
Confidence 64333
No 118
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.97 E-value=1.3 Score=46.82 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=73.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc-c--cCCCCCHHHHHh
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-E--HEPVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~--~~~~~~L~e~V~ 432 (615)
.||.|+|+|..|.++|-.++. .|+ + +++++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 489999999999999998864 254 2 599999832222211100111 001100 0 011246766 55
Q ss_pred ccCCcEEEEccCCC---C-C------CC----HHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC--CcEEEeeC
Q 007156 433 AIKPTILIGTSGQG---R-T------FT----KEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASG 496 (615)
Q Consensus 433 ~vkPtvLIG~S~~~---g-~------Ft----eevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~--GraifASG 496 (615)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 88887555432 1 1 22 35667788899999999999998 445555666631 23377777
Q ss_pred C
Q 007156 497 S 497 (615)
Q Consensus 497 S 497 (615)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
No 119
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.95 E-value=2.3 Score=45.13 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++.=++..+.+++.+++|++|-+ ..|.-+|.||.. .| ..+.+++++ .
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~-------AtVti~hs~-------T------- 191 (281)
T PRK14183 138 PCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----AN-------ATVDICHIF-------T------- 191 (281)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C-------
Confidence 45667778888999999999999999998 889999998864 24 245555542 1
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 192 ----------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 ----------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ----------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246778886 99999999999999999997
No 120
>PRK08328 hypothetical protein; Provisional
Probab=87.79 E-value=0.58 Score=47.47 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCC----CC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV----KE 426 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~----~~ 426 (615)
.+|++.||+++|+|..|..||+.|+.+ |+ ++|.++|.+ .+.. .+|+.+ --|-.+.-.. ..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lvD~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~ 86 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLIDEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLS 86 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-ccCh---hhhccc-cccChhhcCchHHHHH
Confidence 467889999999999999999999864 75 799999986 1221 234421 1111111110 12
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE-ecCCCCC
Q 007156 427 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPTS 474 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPts 474 (615)
..+.++...|++-|=... +.++++-+...-+ +.-+|| +.-|+.+
T Consensus 87 a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~~~~ 131 (231)
T PRK08328 87 AKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDNFET 131 (231)
T ss_pred HHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCCHHH
Confidence 345567788998876533 3467766554432 455666 5567653
No 121
>PLN02306 hydroxypyruvate reductase
Probab=87.62 E-value=3.6 Score=45.29 Aligned_cols=144 Identities=17% Similarity=0.276 Sum_probs=84.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc--------c-
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--------E- 420 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~--------~- 420 (615)
|..|.++++.|+|.|..|..+|+++..+| |+ +++.+|+..- . .+..+...+.. +
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~ 222 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPV 222 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccc
Confidence 56799999999999999999999986443 53 6888887421 0 01110001100 0
Q ss_pred -cCCCCCHHHHHhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc-c-cCCcEEE
Q 007156 421 -HEPVKELVDAVNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT-W-SQGRAIF 493 (615)
Q Consensus 421 -~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~-w-T~Graif 493 (615)
.....+|.|+++. .|+++-. ....|.|+++.++.|. +.-++.=.| +-++-=|+|+. + ..|+.-.
T Consensus 223 ~~~~~~~L~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~g 293 (386)
T PLN02306 223 TWKRASSMEEVLRE--ADVISLHPVLDKTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFR 293 (386)
T ss_pred cccccCCHHHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeE
Confidence 0112479999987 9998873 2334799999999995 445555444 45555555442 2 2455332
Q ss_pred eeCC-CC--CCcccCCeeeCcCCCccccccchhh
Q 007156 494 ASGS-PF--DPFEYGDNVFVPGQANNAYIFPGLG 524 (615)
Q Consensus 494 ASGS-PF--~pV~~~G~~~~p~Q~NN~yiFPGig 524 (615)
| |- =| +|. .+. .--+..|+.+-|=++
T Consensus 294 A-aLDVf~~EP~-~~~---~L~~~pNVilTPHia 322 (386)
T PLN02306 294 V-GLDVFEDEPY-MKP---GLADMKNAVVVPHIA 322 (386)
T ss_pred E-EEeCCCCCCC-Ccc---hHhhCCCEEECCccc
Confidence 2 21 01 111 010 112456888888876
No 122
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.43 E-value=2.5 Score=44.90 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.-++..|.+++..+++++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 139 PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~--------------- 191 (284)
T PRK14190 139 PCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK--------------- 191 (284)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC---------------
Confidence 456677888889999999999999999764 67778887754 23 356666542
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
..+|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 ---------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ---------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ---------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888987 99999999999999999995
No 123
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.43 E-value=1.4 Score=49.32 Aligned_cols=130 Identities=15% Similarity=0.251 Sum_probs=75.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc-CC-----CCCHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQ-TNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP-----VKELV 428 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~-~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~~-----~~~L~ 428 (615)
.||+|+||||+ -.-.|+..+.+. ..++ ...|+|+|.+. +|-+.+...-+.+++.. .+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 554555555432 2342 47899999863 33221222222333221 11 25788
Q ss_pred HHHhccCCcEEEEcc--------------------------CCCCCC--------CHHHHHHHHccCCCcEEEecCCCCC
Q 007156 429 DAVNAIKPTILIGTS--------------------------GQGRTF--------TKEVVEAMASLNEKPIIFSLSNPTS 474 (615)
Q Consensus 429 e~V~~vkPtvLIG~S--------------------------~~~g~F--------teevv~~Ma~~~erPIIFaLSNPts 474 (615)
||+++ +|.+|=.- |.||.| -.++++.|.++|..-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88887 77665222 333332 257888899999999999999999
Q ss_pred cCCCCHHHHhcccCCcEEEeeCCCCC
Q 007156 475 QSECTAEEAYTWSQGRAIFASGSPFD 500 (615)
Q Consensus 475 ~aEctpedA~~wT~GraifASGSPF~ 500 (615)
..+|-.--..++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322112334455544445543
No 124
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.40 E-value=2.1 Score=45.53 Aligned_cols=86 Identities=17% Similarity=0.313 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++.=++..+.+++.+++|++|.+. .|.-+|.||... |. . ....+..++++.
T Consensus 138 PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~--~~AtVt~~hs~t-------------- 195 (286)
T PRK14184 138 PCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-F--ANATVTVCHSRT-------------- 195 (286)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-c--CCCEEEEEeCCc--------------
Confidence 455668888888999999999999999764 577777777531 10 0 013456665431
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.+|.+.++. +|++|+..+.++.|++++|+
T Consensus 196 ----------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 196 ----------PDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ----------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 358889987 99999999999999999994
No 125
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=87.33 E-value=0.62 Score=46.26 Aligned_cols=77 Identities=16% Similarity=0.326 Sum_probs=53.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc---C-CCCC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---E-PVKE 426 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~-~~~~ 426 (615)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|+. +.|.... . ....
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999874 75 8999999973 2221 2432 1222211 1 1235
Q ss_pred HHHHHhccCCcEEEEccC
Q 007156 427 LVDAVNAIKPTILIGTSG 444 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~ 444 (615)
+.+.++...|++-|=...
T Consensus 80 ~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 80 SLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHHHHHHHCCCCEEEEEe
Confidence 778899999998775443
No 126
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.21 E-value=0.25 Score=47.33 Aligned_cols=90 Identities=21% Similarity=0.360 Sum_probs=49.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-Cccc-----------cCCccCccccchhhccc
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIV-----------SSRLESLQHFKKPWAHE 420 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~-GLi~-----------~~R~~~L~~~k~~fA~~ 420 (615)
+.-.||||.|+|.+|.|.++++... |. ++...|.. ..+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5568999999999999999998653 53 34445542 0000 000000000 002221
Q ss_pred ----cCC--CCCHHHHHhccCCcEEEEcc-----CCCCCCCHHHHHHHH
Q 007156 421 ----HEP--VKELVDAVNAIKPTILIGTS-----GQGRTFTKEVVEAMA 458 (615)
Q Consensus 421 ----~~~--~~~L~e~V~~vkPtvLIG~S-----~~~g~Fteevv~~Ma 458 (615)
+.. ...|.+.++. .|++|+.. ..+-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 111 1368888886 79999743 334589999999995
No 127
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=87.07 E-value=4.5 Score=43.26 Aligned_cols=126 Identities=22% Similarity=0.312 Sum_probs=76.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc--CCCCCHHHHHhc
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 433 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~ 433 (615)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+... ..+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 7899999 9999999998754 254 26899999876 2222123544331 11101 011246778887
Q ss_pred cCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCC-cCCCCHHHHhcccC--CcEEEeeC
Q 007156 434 IKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTS-QSECTAEEAYTWSQ--GRAIFASG 496 (615)
Q Consensus 434 vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts-~aEctpedA~~wT~--GraifASG 496 (615)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+..+-+++++. =+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988755555421 11467777888999999999999982 22234445555431 11255555
Q ss_pred C
Q 007156 497 S 497 (615)
Q Consensus 497 S 497 (615)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 4
No 128
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.00 E-value=3.7 Score=43.96 Aligned_cols=111 Identities=15% Similarity=0.125 Sum_probs=67.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--ccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. ..+..-+|.+...++.+...-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999998887764 244100011379999985422 111111244433233221111134567777
Q ss_pred ccCCcEEEEccCCCC--CCC------------HHHHHHHHccC-CCcEEEecCCCC
Q 007156 433 AIKPTILIGTSGQGR--TFT------------KEVVEAMASLN-EKPIIFSLSNPT 473 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g--~Ft------------eevv~~Ma~~~-erPIIFaLSNPt 473 (615)
+ .|++|=+.+.+. -.| +++.+.+.+++ ..-||+-.|||.
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 6 899886655531 123 45677788888 488999999998
No 129
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.88 E-value=1.7 Score=49.59 Aligned_cols=121 Identities=19% Similarity=0.246 Sum_probs=65.4
Q ss_pred ccchHHHHHHHHHHHHHhC-----CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCC
Q 007156 332 QGTASVVLAGLISAMKFLG-----GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR 406 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g-----~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R 406 (615)
.|-.+|..|+-.-.-...| ......|++++|+|.+|+..+..+.. .|. +++++|.+.-.- .+
T Consensus 136 AGy~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rl-e~ 202 (511)
T TIGR00561 136 AGYRAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVK-EQ 202 (511)
T ss_pred HHHHHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHH-HH
Confidence 5555555554332222222 23456899999999999988777654 252 477778764311 00
Q ss_pred ccCccc------------cchhhccccCCC------CCHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHccCCC
Q 007156 407 LESLQH------------FKKPWAHEHEPV------KELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEK 463 (615)
Q Consensus 407 ~~~L~~------------~k~~fA~~~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~er 463 (615)
...+.. ...-||+...+. .-+.+.++. .|++|++.-.+| +.|+|+++.|.. .
T Consensus 203 a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp---G 277 (511)
T TIGR00561 203 VQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA---G 277 (511)
T ss_pred HHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC---C
Confidence 000100 001122211100 114455554 999999983333 589999999973 3
Q ss_pred cEEEecC
Q 007156 464 PIIFSLS 470 (615)
Q Consensus 464 PIIFaLS 470 (615)
-+|.=||
T Consensus 278 svIVDlA 284 (511)
T TIGR00561 278 SVIVDLA 284 (511)
T ss_pred CEEEEee
Confidence 3444344
No 130
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.87 E-value=3.3 Score=44.50 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=63.8
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEccCCccccCCccCcc---ccchhhcccc------C-
Q 007156 356 QRFLFLGAGEAGTGIAELIAL---EISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ---HFKKPWAHEH------E- 422 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~---~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~---~~k~~fA~~~------~- 422 (615)
.+|.++|.|..|.+++++|.+ .+.++.|+.. +=+-+.|++|-+...+.-++. ++++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999976 3333345321 224466999988765531121 2222222100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 423 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 423 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
..-++.|.++...+||+|-+++.. . ..++++..-+ +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~-a~~~~~~al~-~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-N-AHEWHLEALK-EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-H-HHHHHHHHHh-hCCcEEE
Confidence 012688888877899999999643 3 3444444322 5678885
No 131
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.73 E-value=2.7 Score=45.85 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=64.8
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC-ccccCCccCccccchhhccccCCCCCHHHH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG-LIVSSRLESLQHFKKPWAHEHEPVKELVDA 430 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G-Li~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 430 (615)
.+++.+++|+|+|.+|.++|+.|+.. | .+++++|++. .....+.+.|......+... ....+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEKEEDQLKEALEELGELGIELVLG----EYPEEF 65 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeC----CcchhH
Confidence 36788999999999999999998753 5 4799999863 00000000011100011100 001122
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 007156 431 VNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~ 509 (615)
+. ++|++|-.++.. .-++++..+= ...-||+ +..|+...+ ...+.|.-||| +|||-
T Consensus 66 ~~--~~d~vv~~~g~~-~~~~~~~~a~--~~~i~~~-------~~~~~~~~~----~~~~vI~ITGS-------~GKTT 121 (450)
T PRK14106 66 LE--GVDLVVVSPGVP-LDSPPVVQAH--KKGIEVI-------GEVELAYRF----SKAPIVAITGT-------NGKTT 121 (450)
T ss_pred hh--cCCEEEECCCCC-CCCHHHHHHH--HCCCcEE-------eHHHHHHhh----cCCCEEEEeCC-------CchHH
Confidence 33 489888766643 4456555542 2345665 223332222 23678889998 67654
No 132
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.63 E-value=1.6 Score=45.77 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
|++.+++..+.+. +.+++++|||-|+.+|+-.|.+ .|. ++|+++++.
T Consensus 109 Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 109 AIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4555555545543 4589999999999999887754 364 689999984
No 133
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.47 E-value=15 Score=37.93 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=61.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
..||.|+|+|.-|.++|+.|+.. |.- ...+|+++|+. . .+.+...+..|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 46899999999999999988653 410 12457776652 1 011222222221 1122467777764
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCCcCCCCHHHHhccc
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWS 487 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEctpedA~~wT 487 (615)
.|++| ++-.+ -..+++++.+... .+..+|..+++-+ ++++..+|.
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi-----~~~~l~~~~ 111 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV-----STHSIRNLL 111 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC-----CHHHHHHHc
Confidence 67655 44333 2456677777643 3567888776655 355555554
No 134
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.11 E-value=0.82 Score=45.93 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|..|..||+.|+.. |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 567899999999999999999999763 75 789999997
No 135
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.09 E-value=3.1 Score=44.17 Aligned_cols=83 Identities=23% Similarity=0.372 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-+|++.=++..|.+++..+++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 138 ~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------------- 191 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------------- 191 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC--------------
Confidence 34556677788888999999999999999 99999999999753 53 34444321
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
..+|.+.+++ +|++|-.-+.++.+++++++
T Consensus 192 ----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 ----------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1258888987 99999999999999988743
No 136
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.08 E-value=1.9 Score=44.30 Aligned_cols=101 Identities=13% Similarity=0.129 Sum_probs=56.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccC-CccCcc--ccchhhccccCCCCCHHHHHhc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSS-RLESLQ--HFKKPWAHEHEPVKELVDAVNA 433 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~-R~~~L~--~~k~~fA~~~~~~~~L~e~V~~ 433 (615)
||.|+|+|+.|..+|..|... | .+++++++ +--.+. +...+. ......-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999998653 4 46888887 210000 000010 0000000000112355565543
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007156 434 IKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 474 (615)
Q Consensus 434 vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 474 (615)
+|++|=+.-. ...+++++.++.+ .++.+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 6765533222 2478999988763 35567888999863
No 137
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.06 E-value=1.9 Score=42.97 Aligned_cols=118 Identities=12% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhc
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 433 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 433 (615)
++.||.|+|+|..|..+|..+... |.. -.++++++++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999888642 310 12346666542 0 112333332221 1122567888875
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC-CcEEEeeC
Q 007156 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASG 496 (615)
Q Consensus 434 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~-GraifASG 496 (615)
.|++| ++.++. .-+++++.++.+-...+|+.++.-. +.++.-+|.+ +..++-+|
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78776 445443 4588999888653445777777655 3444444443 34455555
No 138
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.00 E-value=3.3 Score=41.99 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=69.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
.||.|+|+|.-|..+|..+... |. ...+++++|++. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999988653 42 125688888641 1122222222 01112466777764
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC-CcEEEeeCCCCCCcc
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASGSPFDPFE 503 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~-GraifASGSPF~pV~ 503 (615)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|.. |.-+ ...-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~i-v~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPV-VRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcE-EEecCCchHH
Confidence 77766 44433 45778888887654 458889999773 344445543 3222 2345544443
No 139
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.60 E-value=2.8 Score=43.78 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc-C
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI-K 435 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v-k 435 (615)
||-|+|.|..|..+|..|... | -++.+.|+. .+ .....++. ......++.|+++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~---g~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKED---RTTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHc---CCcccCCHHHHHhhcCC
Confidence 689999999999999998652 4 356777763 11 12222211 112234666666543 5
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCCcCCCCHH
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAE 481 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEctpe 481 (615)
+|++|= +.+.+ ..+++++.++.+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44454 789999888765 3568999999865 555554
No 140
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.53 E-value=2.7 Score=44.72 Aligned_cols=102 Identities=17% Similarity=0.346 Sum_probs=65.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc--ccC-CCCCHHHHHhc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--EHE-PVKELVDAVNA 433 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~--~~~-~~~~L~e~V~~ 433 (615)
||.|+|||..|..+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+.. .|.. ... ..++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 78999999999999998864 255 3689999974111111111243322 2221 100 0134 456776
Q ss_pred cCCcEEEEccCCC---CCCC--------------HHHHHHHHccCCCcEEEecCCCC
Q 007156 434 IKPTILIGTSGQG---RTFT--------------KEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 434 vkPtvLIG~S~~~---g~Ft--------------eevv~~Ma~~~erPIIFaLSNPt 473 (615)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 89888666653 3 23 47888888999999999999997
No 141
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=85.47 E-value=4.1 Score=39.75 Aligned_cols=82 Identities=16% Similarity=0.334 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.-++..+.+++..+++++|.+. -|.-+|.||.. .| ..+.+++++
T Consensus 17 PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~-------atVt~~h~~--------------- 69 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KG-------ATVTICHSK--------------- 69 (160)
T ss_dssp -HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT---------------
T ss_pred CCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CC-------CeEEeccCC---------------
Confidence 356678888888899999999999999985 88888888865 23 235555553
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 70 ---------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ---------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ---------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ---------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777876 99999999999999999886
No 142
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.42 E-value=8.7 Score=41.20 Aligned_cols=140 Identities=15% Similarity=0.174 Sum_probs=83.4
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 349 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 349 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
.|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. -...+|.
T Consensus 144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~ 199 (333)
T PRK13243 144 LGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLE 199 (333)
T ss_pred cccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHH
Confidence 35679999999999999999999998642 54 588888741 1 1 10 01111 1124799
Q ss_pred HHHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHh-cc-cCCcEEEeeCCCC--C
Q 007156 429 DAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPF--D 500 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~-~w-T~GraifASGSPF--~ 500 (615)
|+++. .|+++=.-- ..++|+++.+..|. +..++.=.|. .++--|+|+ ++ ..|+.-.|.=-=| +
T Consensus 200 ell~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~E 270 (333)
T PRK13243 200 ELLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEE 270 (333)
T ss_pred HHHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCC
Confidence 99986 898874421 13689999999995 5667776554 333333333 22 3565544321111 1
Q ss_pred CcccCCeeeCcCCCccccccchhhH
Q 007156 501 PFEYGDNVFVPGQANNAYIFPGLGL 525 (615)
Q Consensus 501 pV~~~G~~~~p~Q~NN~yiFPGigl 525 (615)
|.. +.. --+..|+++-|=+|-
T Consensus 271 P~~--~~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 271 PYY--NEE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred CCC--Cch--hhcCCCEEECCcCCc
Confidence 111 111 124568889998863
No 143
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.30 E-value=3.2 Score=44.28 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch
Q 007156 337 VVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 415 (615)
Q Consensus 337 VvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~ 415 (615)
+|-.|++.=++..+.+++.+++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 141 cTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~---------------- 196 (295)
T PRK14174 141 CTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA---------------- 196 (295)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC----------------
Confidence 34456788888899999999999999865 677888888643211 12 245555442
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 416 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 416 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 --------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 --------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred --------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1358888987 99999999999999999994
No 144
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.07 E-value=4.3 Score=43.22 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch
Q 007156 337 VVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 415 (615)
Q Consensus 337 VvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~ 415 (615)
+|-.|++.=++-.+.+++.+++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 141 cTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~---------------- 192 (284)
T PRK14177 141 CTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK---------------- 192 (284)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC----------------
Confidence 34466666778889999999999999764 67778887753 24 356777653
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 416 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 416 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|...|.++.++.|+|+
T Consensus 193 --------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 --------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred --------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357788887 99999999999999999996
No 145
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=85.03 E-value=5.7 Score=42.70 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=72.4
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--ccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 9999999988764 254100111279999985311 111111244333233221111135567777
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHccCC-CcEEEecCCCCCcCCCCHHHHhccc
Q 007156 433 AIKPTILIGTSGQG---RT-----------FTKEVVEAMASLNE-KPIIFSLSNPTSQSECTAEEAYTWS 487 (615)
Q Consensus 433 ~vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~~~e-rPIIFaLSNPts~aEctpedA~~wT 487 (615)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||. ..+.--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 6 89888555553 31 12457778888987 99999999998 33444445544
No 146
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.84 E-value=3.1 Score=43.78 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc-C--CCCCH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-E--PVKEL 427 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~--~~~~L 427 (615)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-.. +++. |..+..+. . ...-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999999874 65 78999998744322 2542 21111110 0 11246
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcC
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQS 476 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~a 476 (615)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 6777777888766433 2345665554443212234666777766433
No 147
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.75 E-value=1.6 Score=45.95 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=51.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchh--h--ccc----cCCCCCH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--W--AHE----HEPVKEL 427 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~--f--A~~----~~~~~~L 427 (615)
.||.|+|+|+-|.++|..|... | .++.++|+..= +.+.++...+. + -.. .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999999763 4 35777777311 10111111000 0 000 0112467
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
.|+++. .|++|=+ ... ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~-v~~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVA-VPS-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEE-Cch-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 777765 6665522 222 13467766654 333566667753
No 148
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.75 E-value=4.6 Score=42.82 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-+|++.=++..+.+|+.++++++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 3456677888888899999999999999764 68888888854 24 356777653
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.|++|+|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999999996
No 149
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.62 E-value=1.8 Score=44.65 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=57.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc--hhhcc------ccCCCCCHH
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK--KPWAH------EHEPVKELV 428 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k--~~fA~------~~~~~~~L~ 428 (615)
||.|+|+|..|..+|..|... | .+++++|+..-.. +.+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQA----AEINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHH----HHHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999998752 4 3577888742111 0011100 00000 001124677
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007156 429 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 474 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 474 (615)
++++. +|++| ++... ...+++++.+..+ .+.-+|+.++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77765 77776 33323 3578888887754 34568888887543
No 150
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.51 E-value=1.5 Score=47.63 Aligned_cols=106 Identities=23% Similarity=0.409 Sum_probs=72.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc----cCCCCCHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELV 428 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~ 428 (615)
...-||+++|.|-+|+--|++.+ |+. .++.++|.+ .+| |....-.|..+ .....+++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999998875 442 577888874 233 44444455533 12234699
Q ss_pred HHHhccCCcEEEEc-----cCCCCCCCHHHHHHHHccCCCcEE----------EecCCCCCcCCCCHHH
Q 007156 429 DAVNAIKPTILIGT-----SGQGRTFTKEVVEAMASLNEKPII----------FSLSNPTSQSECTAEE 482 (615)
Q Consensus 429 e~V~~vkPtvLIG~-----S~~~g~Fteevv~~Ma~~~erPII----------FaLSNPts~aEctped 482 (615)
|++++ .|.+||. +..+.+.|+|+++.|.. --+| |-=|-||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mkp---GsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKP---GSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCC---CcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9998887 44456899999999963 3333 4555677666665543
No 151
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.28 E-value=0.94 Score=44.95 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=48.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc-cCC-----C
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----V 424 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~ 424 (615)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.+. ... .
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 468899999999999999999999875 75 7999999973 2221 24321 12211 011 1
Q ss_pred CCHHHHHhccCCcEEEE
Q 007156 425 KELVDAVNAIKPTILIG 441 (615)
Q Consensus 425 ~~L~e~V~~vkPtvLIG 441 (615)
..+.+.++...|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24566677777877553
No 152
>PRK08291 ectoine utilization protein EutC; Validated
Probab=84.04 E-value=5.2 Score=42.60 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 334 TASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 334 TAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
||++ |++++..... -..++++|+|+|..|..++..+... .++ +++.++|+. .+ +...+
T Consensus 116 T~a~---~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~---~a~~l 173 (330)
T PRK08291 116 TAAA---GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA---KAEAY 173 (330)
T ss_pred HHHH---HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH---HHHHH
Confidence 5554 3444444332 2347999999999988877766542 233 678888773 22 23333
Q ss_pred chhhccc----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCcEEEec-CCCCCcCCCCHHH
Q 007156 414 KKPWAHE----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 482 (615)
Q Consensus 414 k~~fA~~----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEctped 482 (615)
...+.+. .....++.++++. .|++|-++.. .-+|+.++++. .--|.++ |+--.+-|+.|+-
T Consensus 174 ~~~~~~~~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 174 AADLRAELGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred HHHHhhccCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 3333211 1123678999985 8999876543 33667766642 1123333 4433456888765
No 153
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.96 E-value=5.4 Score=44.15 Aligned_cols=118 Identities=14% Similarity=0.182 Sum_probs=63.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc-cCCccCccccchhhccccCCCCCHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV-SSRLESLQHFKKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~-~~R~~~L~~~k~~fA~~~~~~~~L~e~V 431 (615)
+..+||+|+|.|-.|+++|++|.. .|. .+.++|.+---. ......|......+. .. ....+-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~~~~~~~~~~l~~~gi~~~---~~-~~~~~~~ 75 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSEEELGEVSNELKELGVKLV---LG-ENYLDKL 75 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCCccchHHHHHHHhCCCEEE---eC-CCChHHh
Confidence 456799999999999999999865 363 578888642100 000000111000110 01 1122334
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~ 509 (615)
+ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++++.+.+.|--||| ||||-
T Consensus 76 ~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 76 D--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred c--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 4 478766444433 23455555543 446775 2233 3445445678888998 78754
No 154
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=83.69 E-value=5.1 Score=42.91 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++.=++..|.+++.+++|++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 148 PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~--------------- 200 (299)
T PLN02516 148 PCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR--------------- 200 (299)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 455667788888899999999999999864 57777777754 24 357777663
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 201 ---------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ---------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ---------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888887 99999999999999999997
No 155
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=83.58 E-value=2.6 Score=44.05 Aligned_cols=121 Identities=20% Similarity=0.348 Sum_probs=70.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc---CCCCCHHHHHhcc
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDAVNAI 434 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~V~~v 434 (615)
|.|+|||..|.++|..++. .|+ + .++|+|.+==..++..-++.+.. .+.... ....+. ++++.
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~l~d- 66 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIVEGLPQGKALDISQAA-PILGSDTKVTGTNDY-EDIAG- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HHhCC-
Confidence 5799999999999988764 254 2 79999986100010000111111 010000 011355 45665
Q ss_pred CCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCc---EEEeeCC
Q 007156 435 KPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGR---AIFASGS 497 (615)
Q Consensus 435 kPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~Gr---aifASGS 497 (615)
.|++|=+.+.+ | -+-+++++.|.+++...+|+-.|||. ......+++++ |. -+|++|.
T Consensus 67 -ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rviGlgt 141 (300)
T cd01339 67 -SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVIGMAG 141 (300)
T ss_pred -CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEEEecc
Confidence 89888433322 1 12347888899999999999999998 33344455554 32 4777774
No 156
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.36 E-value=1.5 Score=44.93 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999874 65 799999997
No 157
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=83.12 E-value=17 Score=36.55 Aligned_cols=91 Identities=16% Similarity=0.250 Sum_probs=50.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~ee-Ark~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 431 (615)
..++||.|+|.|..+. +|..+...+.. ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4578999999998874 78777766642 110000 112222333322222211 112233444432 32222
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHH
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMA 458 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma 458 (615)
-+-|++|+.|..|. |+++++.+.
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~ 130 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE 130 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH
Confidence 25799999999887 899998874
No 158
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.11 E-value=4.4 Score=43.23 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~G-AGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..+.+++.++|+|+| .|..|..+|.+|... | -.+++++++ .
T Consensus 139 PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g-------~tVtv~~~r-------T------- 192 (296)
T PRK14188 139 PCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----N-------ATVTIAHSR-------T------- 192 (296)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----C-------CEEEEECCC-------C-------
Confidence 345567777778889999999999999 999999999999752 5 356666532 1
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEV 453 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteev 453 (615)
.+|.|+++. .|++|-.-+.++.+++++
T Consensus 193 ----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ 219 (296)
T PRK14188 193 ----------RDLPAVCRR--ADILVAAVGRPEMVKGDW 219 (296)
T ss_pred ----------CCHHHHHhc--CCEEEEecCChhhcchhe
Confidence 137788886 899998888777776665
No 159
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.01 E-value=5.8 Score=42.31 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-+|++.=++..+.+++..++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 139 ~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~-------ATVtichs~-------------- 192 (288)
T PRK14171 139 IPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----EN-------CSVTICHSK-------------- 192 (288)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 4556677888889999999999999999764 67888888754 24 245666653
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.+++++|+
T Consensus 193 ----------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 ----------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1357888887 99999999999999999997
No 160
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.68 E-value=6.1 Score=42.32 Aligned_cols=86 Identities=17% Similarity=0.260 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-+|++.=++..|.+++.++++++|.+. .|.-+|.||.. .|+. ....+.++.++
T Consensus 142 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~--------------- 198 (297)
T PRK14168 142 PCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR--------------- 198 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC---------------
Confidence 345667777788889999999999999764 57777777753 2221 01345665543
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 199 ---------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ---------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ---------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 161
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.52 E-value=6.4 Score=42.13 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.-++..+.+++.+++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 141 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~--------------- 193 (294)
T PRK14187 141 PCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA--------------- 193 (294)
T ss_pred CcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC---------------
Confidence 446677788889999999999999999864 67777777753 23 356666663
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.++.++|+
T Consensus 194 ---------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ---------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 0357788887 99999999999999999996
No 162
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.52 E-value=6 Score=42.12 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.-++..|.+++.+++|++|.+ ..|.-+|.||... ..| ..+.+|.++
T Consensus 139 PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~--------------- 193 (284)
T PRK14193 139 PCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG--------------- 193 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC---------------
Confidence 45667888888899999999999999976 4677888887531 012 245666552
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 194 ---------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ---------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ---------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1368888987 99999999999999999996
No 163
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.47 E-value=6.3 Score=41.90 Aligned_cols=83 Identities=16% Similarity=0.239 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-+|++.=++..|.+++.+++|++|-+. .|--+|.||.. .| ..+.+|+++ .
T Consensus 137 ~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------T------ 191 (282)
T PRK14166 137 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK-------T------ 191 (282)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-------C------
Confidence 3456677888888899999999999999764 67778888753 23 346666653 1
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
++|.+.+++ +|++|-..|.++.|++++|+
T Consensus 192 -----------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -----------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -----------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 358888887 99999999999999999996
No 164
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.37 E-value=5.5 Score=43.41 Aligned_cols=114 Identities=19% Similarity=0.240 Sum_probs=59.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
+++.+++|+|+|..|.++|+.|.+ .| .++++.|.+-.-.....+.|.+.-..+... ..-.++..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G-------~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~----~~~~~~~~ 66 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LG-------ANVTVNDGKPFSENPEAQELLEEGIKVICG----SHPLELLD 66 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CC-------CEEEEEcCCCccchhHHHHHHhcCCEEEeC----CCCHHHhc
Confidence 567899999999999999888865 36 368888864110000000011110011000 11122222
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCC
Q 007156 433 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGS 497 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGS 497 (615)
. .+|++|=.++.+ .-.+++.++.. ..-||+ +.+|. ++.+.+.+.|--|||
T Consensus 67 ~-~~d~vV~s~gi~-~~~~~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~I~VTGT 116 (447)
T PRK02472 67 E-DFDLMVKNPGIP-YTNPMVEKALE--KGIPII-------TEVEL----AYLISEAPIIGITGS 116 (447)
T ss_pred C-cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHH----HHHhcCCCEEEEeCC
Confidence 1 378887655554 23455544443 345665 33342 334445678888998
No 165
>PRK05442 malate dehydrogenase; Provisional
Probab=82.25 E-value=8.4 Score=41.46 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=70.3
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc--ccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI--VSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi--~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
.||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.-. .++-.-+|.+...++-+...-..+..+.++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~ 79 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK 79 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC
Confidence 38999998 99999998877653 33100001289999985321 111111244433233222111135567787
Q ss_pred ccCCcEEEEccCC---CCC-----------CCHHHHHHHHccC-CCcEEEecCCCCCcCCCCHHHHhccc
Q 007156 433 AIKPTILIGTSGQ---GRT-----------FTKEVVEAMASLN-EKPIIFSLSNPTSQSECTAEEAYTWS 487 (615)
Q Consensus 433 ~vkPtvLIG~S~~---~g~-----------Fteevv~~Ma~~~-erPIIFaLSNPts~aEctpedA~~wT 487 (615)
+ .|++|=+.+. +|- .=+++++.+.+++ ...||+-.|||. .+..--+++++
T Consensus 80 d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 144 (326)
T PRK05442 80 D--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA---NTNALIAMKNA 144 (326)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch---HHHHHHHHHHc
Confidence 6 8988855543 331 1245667777766 699999999998 33333444443
No 166
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=82.19 E-value=1.2 Score=49.82 Aligned_cols=124 Identities=16% Similarity=0.343 Sum_probs=81.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc-cCC-----CCCH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEP-----VKEL 427 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~-----~~~L 427 (615)
+..||+|+||||.. ..++|...+.+...++ ...|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999984 6788887777766676 3789999974 44422111122233332 112 2578
Q ss_pred HHHHhccCCcEEEEc--------------------------cCCCCCCC--------HHHHHHHHccCCCcEEEecCCCC
Q 007156 428 VDAVNAIKPTILIGT--------------------------SGQGRTFT--------KEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~erPIIFaLSNPt 473 (615)
.+|+++ +|-.|=. .++||.|. -|+++.|-+.|..--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999987 6555421 33444443 38899999999999999999999
Q ss_pred CcCCCCHHHHhcccCC-cEE
Q 007156 474 SQSECTAEEAYTWSQG-RAI 492 (615)
Q Consensus 474 s~aEctpedA~~wT~G-rai 492 (615)
+++|- -.++|+.+ +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77774 34555544 443
No 167
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.81 E-value=4.8 Score=42.93 Aligned_cols=124 Identities=19% Similarity=0.286 Sum_probs=76.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc--CCCCCHHHHHhc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVDAVNA 433 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e~V~~ 433 (615)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|.... ...++.++ ++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887754 254 4789999974211111111243332 332211 11245554 665
Q ss_pred cCCcEEEEccCCC---CCCCH------------HHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc--CCcEEEeeC
Q 007156 434 IKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASG 496 (615)
Q Consensus 434 vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT--~GraifASG 496 (615)
.|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||.. ....-+++++ .-+-+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecC
Confidence 89987555542 3 233 67788889999999999999983 4555555553 123467776
Q ss_pred C
Q 007156 497 S 497 (615)
Q Consensus 497 S 497 (615)
.
T Consensus 146 t 146 (312)
T cd05293 146 C 146 (312)
T ss_pred c
Confidence 4
No 168
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.66 E-value=2.1 Score=39.52 Aligned_cols=93 Identities=17% Similarity=0.256 Sum_probs=53.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc--c-c-CCCCCHHHHHh
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH--E-H-EPVKELVDAVN 432 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~--~-~-~~~~~L~e~V~ 432 (615)
||+++|+|.-|..+|+.|+.. |+ ++|+++|.+-+ .. .+|..+ .|.. + . +....+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~---~nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL---SNLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc---chhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999764 65 79999998733 22 124322 1221 1 1 11134667777
Q ss_pred ccCCcEEEEccCCCCCCCHHH-HHHHHccCCCcEEEecCC
Q 007156 433 AIKPTILIGTSGQGRTFTKEV-VEAMASLNEKPIIFSLSN 471 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteev-v~~Ma~~~erPIIFaLSN 471 (615)
...|.+=|-.-.. .++++. .+.+ .+--||+.-+.
T Consensus 64 ~~~p~v~i~~~~~--~~~~~~~~~~~---~~~diVi~~~d 98 (143)
T cd01483 64 ELNPGVNVTAVPE--GISEDNLDDFL---DGVDLVIDAID 98 (143)
T ss_pred HHCCCcEEEEEee--ecChhhHHHHh---cCCCEEEECCC
Confidence 7777665543322 233332 2222 24456665444
No 169
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.54 E-value=4.6 Score=43.39 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=26.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.||.|+|||..|.|||.+++.+ |. ++.++|..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 5899999999999999998753 54 57777763
No 170
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.39 E-value=4.8 Score=41.13 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=55.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchh-----hccccCCCCCHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP-----WAHEHEPVKELVDAV 431 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~-----fA~~~~~~~~L~e~V 431 (615)
||.|+|+|+.|..+|..|.+. | .+++++|+++=-. +.+...... +........++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHL----DALNENGLRLEDGEITVPVLAADDPAEL- 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHH----HHHHHcCCcccCCceeecccCCCChhHc-
Confidence 799999999999999988653 4 4688888742110 111110000 00000112345543
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccC-CCcEEEecCCCC
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLSNPT 473 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLSNPt 473 (615)
+ ++|++| ++... .-++++++.++.+- ++-+|+.+.|.-
T Consensus 65 ~--~~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 65 G--PQDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred C--CCCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 3 478777 44433 34789999998643 344677799975
No 171
>PRK06436 glycerate dehydrogenase; Provisional
Probab=81.21 E-value=19 Score=38.32 Aligned_cols=91 Identities=13% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
+..|.++++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + . ...+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-~------~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-S------IYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-c------ccCCHHH
Confidence 45799999999999999999998664 3 254 6888887521 0101 0 0 1247899
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCC
Q 007156 430 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNP 472 (615)
Q Consensus 430 ~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNP 472 (615)
+++. .|+++=.- ..-++|+++.++.|. +..++.=.|.=
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG 211 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARA 211 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCc
Confidence 8876 88887432 123688999999995 56788877653
No 172
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.17 E-value=1.5 Score=51.35 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=35.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
.+|++.||+++|||.-|+-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 578899999999999999999999875 75 79999998633
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.16 E-value=6 Score=43.28 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=21.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
-...||.|+|||+-|+++|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999975
No 174
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.99 E-value=3.8 Score=42.20 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=33.4
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|++.+++..+......+++|+|+|.+|.+++..+.+ .| .+++++|+.
T Consensus 102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3555555544455667899999999888888877754 24 368888873
No 175
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=80.95 E-value=2.5 Score=39.90 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
+|||+|+|.||+..|..|.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999973 23 5788887643
No 176
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.83 E-value=7.9 Score=41.25 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-+|++.=++..|.+|+.+++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~-------------- 190 (284)
T PRK14170 137 VPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR-------------- 190 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 3455677777788899999999999999864 67777777753 23 356666552
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 191 ----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
No 177
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.64 E-value=0.96 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALE 377 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~ 377 (615)
+.-+|+|+|||-||+..|++|.+.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc
Confidence 445899999999999999999886
No 178
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.22 E-value=8.9 Score=41.05 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..+.+|+.+++|++|.+. .|.-+|.||.. .|.+. ...+.+|.++
T Consensus 138 PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~--------------- 194 (293)
T PRK14185 138 SATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR--------------- 194 (293)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC---------------
Confidence 456677778888889999999999999865 57777777753 23210 1234444443
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 195 ---------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ---------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999996
No 179
>PRK06141 ornithine cyclodeaminase; Validated
Probab=80.18 E-value=11 Score=39.98 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc---cCCCCCHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 430 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 430 (615)
...+++|+|+|..|..++..+... .+ .++|+++|+. .++ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876543 23 3688888873 222 23333333221 1123678899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEec-CCCCCcCCCCHHH
Q 007156 431 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEE 482 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEctped 482 (615)
++. .|++|-++... .+|+.+.++ +.-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 976 99998766543 246665553 22244444 4455677888753
No 180
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.79 E-value=3.7 Score=46.17 Aligned_cols=48 Identities=27% Similarity=0.390 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|++.+++..+.++++.+++|+|+|.+|.+++..+.. .|. +++++|++
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4788888888889999999999999888877777754 352 67877763
No 181
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.61 E-value=5.6 Score=43.99 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=31.1
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 348 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 348 ~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..+..++.++++|+|+|-+|+.+|+.|.+ .|. ++.++|..
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~-----~G~-------~V~~~d~~ 48 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLE-----LGA-------RVTVVDDG 48 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 34556778899999999999999988854 363 58888864
No 182
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.52 E-value=8.6 Score=42.92 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 431 (615)
.+...||+|+|+|-+|.++|+.|.. .|. ++++.|++= . ...+.+.....++... ..-.+-+
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~--~-~~~~~l~~~gi~~~~~----~~~~~~~ 72 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDNE--T-ARHKLIEVTGVADIST----AEASDQL 72 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCCh--H-HHHHHHHhcCcEEEeC----CCchhHh
Confidence 3566789999999999999999864 352 688888641 1 0000011111111111 1111223
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHH---Hhccc-CCcEEEeeCCCCCCcccCCe
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEE---AYTWS-QGRAIFASGSPFDPFEYGDN 507 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctped---A~~wT-~GraifASGSPF~pV~~~G~ 507 (615)
+ ++|.+|=.++.+ --.+++.++.. ...||+ +..|. +.. +-.|+ ..+.|--||| |||
T Consensus 73 ~--~~d~vV~Spgi~-~~~p~~~~a~~--~gi~v~-------~~~el-~~~~~~~~~~~~~~~vIaVTGT-------nGK 132 (473)
T PRK00141 73 D--SFSLVVTSPGWR-PDSPLLVDAQS--QGLEVI-------GDVEL-AWRLDQAGVFGEPRTWLAVTGT-------NGK 132 (473)
T ss_pred c--CCCEEEeCCCCC-CCCHHHHHHHH--CCCcee-------eHHHH-HHHhhhhhccCCCCCEEEEeCC-------CcH
Confidence 3 378888666666 34566665543 445654 22332 111 00121 2367778998 887
Q ss_pred ee
Q 007156 508 VF 509 (615)
Q Consensus 508 ~~ 509 (615)
|-
T Consensus 133 TT 134 (473)
T PRK00141 133 TT 134 (473)
T ss_pred HH
Confidence 64
No 183
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.08 E-value=12 Score=40.16 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=67.4
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 349 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 349 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
.+..|.+.+|.|+|.|..|..+|+.+.. .|. +++.+|+.. +. .. .+.+ ...+|.
T Consensus 140 ~~~~l~g~~VgIIG~G~IG~~vA~~L~~-----~G~-------~V~~~d~~~----~~---~~----~~~~---~~~~l~ 193 (330)
T PRK12480 140 MSKPVKNMTVAIIGTGRIGAATAKIYAG-----FGA-------TITAYDAYP----NK---DL----DFLT---YKDSVK 193 (330)
T ss_pred CccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCCh----hH---hh----hhhh---ccCCHH
Confidence 3567899999999999999999998864 253 688888641 10 10 1111 124788
Q ss_pred HHHhccCCcEEEEcc-CC---CCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcc-cCCcEEEe
Q 007156 429 DAVNAIKPTILIGTS-GQ---GRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW-SQGRAIFA 494 (615)
Q Consensus 429 e~V~~vkPtvLIG~S-~~---~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~w-T~GraifA 494 (615)
|+++. .|+++=.- .. -+.|.++++..|. +..++.-.|. -.-+.-++.+++ ..|+.-.|
T Consensus 194 ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk---~gavlIN~aR---G~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 194 EAIKD--ADIISLHVPANKESYHLFDKAMFDHVK---KGAILVNAAR---GAVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred HHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC---CCcEEEEcCC---ccccCHHHHHHHHHcCCeeEE
Confidence 99886 88766322 11 1467777887774 4556664443 233333333333 24554434
No 184
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=79.00 E-value=0.99 Score=50.97 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
+...+-||||+|||.||++.|..|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 34556699999999999999999984
No 185
>PRK07680 late competence protein ComER; Validated
Probab=78.90 E-value=4.8 Score=41.31 Aligned_cols=98 Identities=13% Similarity=0.250 Sum_probs=59.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 436 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 436 (615)
+|.|+|+|..|..+|..|... |.- ...+++++|++ . +........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999988653 420 12468888774 1 11211111110 00112467777765 7
Q ss_pred cEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007156 437 TILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 474 (615)
Q Consensus 437 tvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 474 (615)
|++| ++..+ ...+++++.++.+ .+..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8775 33333 3467888887754 34568889998763
No 186
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.82 E-value=6 Score=41.33 Aligned_cols=93 Identities=16% Similarity=0.243 Sum_probs=56.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc-cCCCCCHHHHHhcc-
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI- 434 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v- 434 (615)
||.|+|.|..|..+|..|... | .+++++|+.. .+ .++ ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~~----~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---VEA----LAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---HHH----HHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999753 4 3577777741 11 211 2111 11235677887765
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 473 (615)
++|++|=+- ......+++++.+.. ..+..+|+-+|+-.
T Consensus 59 ~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 367655332 233356667665543 34567888887633
No 187
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=78.77 E-value=11 Score=39.74 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=61.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~G-ls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
.||.|+|+|..|-.|+.-|+.. | ++ ..+|++.|+. .+......+.|--.. ..+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~~--~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVVT--TTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCcc--cCcHHHHHhh-
Confidence 5899999999999888888764 4 32 3688887773 122223344442111 3455566665
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ 488 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~ 488 (615)
.|+++ ++-.| ..=+++++.+....+..+|..+.= =.+.++..+|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISiaA-----Gv~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIAA-----GVSIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEeC-----CCCHHHHHHHcC
Confidence 66666 44444 233566666654455666666553 335555555543
No 188
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.53 E-value=10 Score=39.25 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----G-------YDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 6899999999999999998653 5 368888874
No 189
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.31 E-value=21 Score=36.35 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 007156 342 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 398 (615)
Q Consensus 342 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~ 398 (615)
.+.|++..+. ..+.+++|+|+|..|...+.+. .+ .|. ++++.+|+
T Consensus 109 a~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~a-k~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 109 VMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAA-AA----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHhccC-CCCCEEEEECCCHHHHHHHHHH-HH----cCC------CEEEEECC
Confidence 3445555443 3788999999987776554443 22 363 56887765
No 190
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=78.19 E-value=2.5 Score=47.55 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=48.9
Q ss_pred cccccCCChhhHHHHHHHHHHHHHHHhCccccc----ccchHHHHHHHHHHHHHh--------CCCCCCceEEEeCcChH
Q 007156 299 GLRQKRAIGQEYAELLHEFMTAVKQNYGERILI----QGTASVVLAGLISAMKFL--------GGSLADQRFLFLGAGEA 366 (615)
Q Consensus 299 Glr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli----QGTAaVvLAgll~Alr~~--------g~~L~d~riv~~GAGsA 366 (615)
.+..+-+.+.+|.++.+++= +. .. |.++| .+.|....+-+++.++.. ...-.+.++||+|||.|
T Consensus 148 ~i~~~~id~~~~~~~~~~~~--v~-~V-P~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVvIIGgGpA 223 (515)
T TIGR03140 148 NISHTMIDGALFQDEVEALG--IQ-GV-PAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPA 223 (515)
T ss_pred CceEEEEEchhCHHHHHhcC--Cc-cc-CEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEEEECCCHH
Confidence 35566677777777765541 11 22 67776 455666667777766543 12244578999999999
Q ss_pred HHHHHHHHHH
Q 007156 367 GTGIAELIAL 376 (615)
Q Consensus 367 G~GIA~ll~~ 376 (615)
|+..|..+..
T Consensus 224 Gl~AA~~la~ 233 (515)
T TIGR03140 224 GAAAAIYAAR 233 (515)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 191
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=77.76 E-value=22 Score=40.52 Aligned_cols=36 Identities=22% Similarity=0.063 Sum_probs=28.4
Q ss_pred CcCCCccccccchhhHHHHHcCCcccCHHHHHHHHH
Q 007156 510 VPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAE 545 (615)
Q Consensus 510 ~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~ 545 (615)
.||..+|-+.+|.+.=+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999888888887776677777776654
No 192
>PRK07574 formate dehydrogenase; Provisional
Probab=77.76 E-value=14 Score=40.89 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+... .. + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch-h-h---Hhhc--CceecCCHHH
Confidence 4579999999999999999999998642 54 6888887532 00 0 0 0011 0111257999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc--ccCCcEEEeeCCCCCCcc
Q 007156 430 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFDPFE 503 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~--wT~GraifASGSPF~pV~ 503 (615)
+++. .|+++=.-- ..++|+++.+..|. +..++.=.|. .++.-|+|+. ...|+.-.|..-=|.+--
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~EP 315 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQP 315 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCCC
Confidence 9987 898874321 13689999999995 5667775554 5555555442 135665555443222110
Q ss_pred c-CCeeeCcCCCccccccchhh
Q 007156 504 Y-GDNVFVPGQANNAYIFPGLG 524 (615)
Q Consensus 504 ~-~G~~~~p~Q~NN~yiFPGig 524 (615)
. ....+ -+..|+.+-|=++
T Consensus 316 lp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 316 APADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred CCCCChH--HhCCCeEECCccc
Confidence 0 01000 1334777778665
No 193
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.47 E-value=2.6 Score=47.32 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=54.4
Q ss_pred ccccCCChhhHHHHHHHHHHHHHHHhCccccc----ccchHHHHHHHHHHHHHhC--------CCCCCceEEEeCcChHH
Q 007156 300 LRQKRAIGQEYAELLHEFMTAVKQNYGERILI----QGTASVVLAGLISAMKFLG--------GSLADQRFLFLGAGEAG 367 (615)
Q Consensus 300 lr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli----QGTAaVvLAgll~Alr~~g--------~~L~d~riv~~GAGsAG 367 (615)
+..+-+.+.+|.++.+++ -+. .. |.+++ ...|....+-++..++... ....+..+||+|||.||
T Consensus 148 i~~~~id~~~~~~~~~~~--~v~-~V-P~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaG 223 (517)
T PRK15317 148 ITHTMIDGALFQDEVEAR--NIM-AV-PTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAG 223 (517)
T ss_pred ceEEEEEchhCHhHHHhc--CCc-cc-CEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHH
Confidence 556666666777665544 111 12 66666 4556666777777776431 22345689999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 368 TGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 368 ~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+..|..+.. .|+ ++.++|.+
T Consensus 224 l~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 224 AAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHHHHHH-----CCC-------cEEEEecC
Confidence 999998864 364 56666654
No 194
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.43 E-value=12 Score=39.82 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..+.+++.++++++|-+. .|.-+|.||.. .| ..+.+|+++
T Consensus 138 PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~--------------- 190 (282)
T PRK14182 138 PCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR--------------- 190 (282)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 456678888889999999999999999764 57777777753 23 245555442
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.+++|+|+
T Consensus 191 ---------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ---------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ---------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 195
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=77.28 E-value=9.7 Score=42.11 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhCcccc-cccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 007156 314 LHEFMTAVKQNYGERIL-IQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKK 392 (615)
Q Consensus 314 vdeFv~Av~~~~gp~vl-iQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~ 392 (615)
.|+|++++.+.+|..+- ++.--.-.-+-+..++.-....|+..|++|+|-+.-.+++++.|.+. .|+..
T Consensus 248 T~~~L~~la~~~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee----lGm~~------ 317 (427)
T PRK02842 248 TRAWLEAAAAAFGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE----CGMEL------ 317 (427)
T ss_pred HHHHHHHHHHHhCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh----CCCEE------
Confidence 45677777777753221 10000111134455566667778999999999988899999998864 37632
Q ss_pred EEEEccCCccccCCccCccccchhhcc-----ccCCCCCHHHHHhccCCcEEEEcc
Q 007156 393 IWLVDSKGLIVSSRLESLQHFKKPWAH-----EHEPVKELVDAVNAIKPTILIGTS 443 (615)
Q Consensus 393 i~lvD~~GLi~~~R~~~L~~~k~~fA~-----~~~~~~~L~e~V~~vkPtvLIG~S 443 (615)
..+-+. +.++ +.+.+.-+.+.. +..+...+++.|+..|||.|||-|
T Consensus 318 -v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 318 -VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred -EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 222111 0111 111111111111 112223468889999999999977
No 196
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.26 E-value=8.1 Score=40.83 Aligned_cols=126 Identities=20% Similarity=0.314 Sum_probs=73.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccC-CCCCHHHHHhccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE-PVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~-~~~~L~e~V~~vk 435 (615)
||.|+|+|..|..+|-.++. .|+ ...++++|.+-=...+...++.+.. +|-.... ...+. +.++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~~-~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHGT-PFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHccc-cccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988764 254 3689999974110111000122221 2211100 01344 45665
Q ss_pred CcEEEEccCCCCCC--------------CHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC--CcEEEeeCCCC
Q 007156 436 PTILIGTSGQGRTF--------------TKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFASGSPF 499 (615)
Q Consensus 436 PtvLIG~S~~~g~F--------------teevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~--GraifASGSPF 499 (615)
.|+.|=+.+.+..- =+++++.+.+++..=+|+-.+||. +....-+++.++ -+-+|++|.--
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 78777444443111 136778888888899999999996 455555555541 23367776543
No 197
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=77.19 E-value=20 Score=38.06 Aligned_cols=106 Identities=10% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 430 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 430 (615)
..|.++++.|+|-|..|-.+|+++. ++ |+ +|+.+|+.+- .. + . .+ ...+|.|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~-~f----gm-------~V~~~d~~~~---~~-~----~--~~-----~~~~l~el 193 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQ-AF----GA-------KVVYYSTSGK---NK-N----E--EY-----ERVSLEEL 193 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-hc----CC-------EEEEECCCcc---cc-c----c--Cc-----eeecHHHH
Confidence 5799999999999999999999885 32 54 6888888531 10 0 0 11 12479999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcc--cCCcEE
Q 007156 431 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW--SQGRAI 492 (615)
Q Consensus 431 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~w--T~Grai 492 (615)
++. .|+++=. ....++|+++.++.|. +..++.=.| +.++-=|+|+-. ..|+.-
T Consensus 194 l~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk---~~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 194 LKT--SDIISIHAPLNEKTKNLIAYKELKLLK---DGAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hhc--CCEEEEeCCCCchhhcccCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 987 8888732 2234799999999995 566666444 466666655432 456654
No 198
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.89 E-value=12 Score=39.85 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-.|++.=++-.|.+|+..++|++|.+. .|.-+|.||.. .| ..+.+|+++
T Consensus 138 ~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~-------------- 191 (282)
T PRK14180 138 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF-------------- 191 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC--------------
Confidence 3556778888888899999999999999764 67788888753 24 345666543
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 ----------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 ----------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred ----------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1257777776 99999999999999999996
No 199
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.86 E-value=36 Score=34.60 Aligned_cols=95 Identities=12% Similarity=0.202 Sum_probs=52.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 436 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 436 (615)
||.|+|+|..|..+++-|... |.. .+.+++.|+. . +......+.+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 689999999999999988652 532 2456666652 1 11222222221 01122467777765 5
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 437 TILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 437 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
|++| ++..+.. -+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6555 3332322 366666652 33456777766555
No 200
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.53 E-value=13 Score=39.50 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc
Q 007156 335 ASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF 413 (615)
Q Consensus 335 AaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~ 413 (615)
.-+|-.|++.=++..|.+++.+++|++|.+. .|.-+|.||.. .| ..+.++.++
T Consensus 136 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~-------------- 189 (282)
T PRK14169 136 VASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK-------------- 189 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC--------------
Confidence 3456677778888889999999999999764 67788888754 24 345665443
Q ss_pred chhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 414 KKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 414 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 190 ----------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ----------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 201
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.52 E-value=13 Score=39.87 Aligned_cols=86 Identities=12% Similarity=0.230 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..+.+++.++++++|.+. -|.-+|.||... +.. ....+.+|.++
T Consensus 138 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~--------------- 194 (297)
T PRK14167 138 PCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR--------------- 194 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC---------------
Confidence 346677778888889999999999999864 577788777531 110 01235555442
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 195 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 ---------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 202
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.20 E-value=15 Score=39.35 Aligned_cols=86 Identities=19% Similarity=0.331 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..|.+|+.+++|++|-+. .|.-+|.||.. .|... ...+.+|.++
T Consensus 134 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~--------------- 190 (287)
T PRK14181 134 PCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ--------------- 190 (287)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC---------------
Confidence 456677778888999999999999999764 67778877754 22110 1245544432
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 191 ---------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ---------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 203
>PLN03139 formate dehydrogenase; Provisional
Probab=76.18 E-value=20 Score=39.64 Aligned_cols=143 Identities=17% Similarity=0.113 Sum_probs=85.2
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 349 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 349 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
.+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ . .+ .+ ......+|.
T Consensus 193 ~~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~-~--~~-~~--g~~~~~~l~ 250 (386)
T PLN03139 193 RAYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE-L--EK-ET--GAKFEEDLD 250 (386)
T ss_pred CCcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh-h--Hh-hc--CceecCCHH
Confidence 45689999999999999999999999642 54 5777887532 0 01 0 01 00 001124799
Q ss_pred HHHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHh-cc-cCCcEEEeeCCCCCCc
Q 007156 429 DAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFDPF 502 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~-~w-T~GraifASGSPF~pV 502 (615)
|+++. .|+++=..- .-++|+++.+..|. +.-+++=.| +.++.-|+|+ ++ ..|+.-.|..-=|++-
T Consensus 251 ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~iVDe~AL~~AL~sG~l~GAaLDV~~~E 321 (386)
T PLN03139 251 AMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNA----RGAIMDTQAVADACSSGHIGGYGGDVWYPQ 321 (386)
T ss_pred HHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECC----CCchhhHHHHHHHHHcCCceEEEEcCCCCC
Confidence 99986 888773321 13689999999995 455666544 3555555443 22 3566655655433221
Q ss_pred ccCCeeeCc-CCCccccccchhh
Q 007156 503 EYGDNVFVP-GQANNAYIFPGLG 524 (615)
Q Consensus 503 ~~~G~~~~p-~Q~NN~yiFPGig 524 (615)
-.. ...| -+..|+.+-|=++
T Consensus 322 Plp--~d~pL~~~pNvilTPHia 342 (386)
T PLN03139 322 PAP--KDHPWRYMPNHAMTPHIS 342 (386)
T ss_pred CCC--CCChhhcCCCeEEccccc
Confidence 110 0011 2345888888775
No 204
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.83 E-value=20 Score=36.89 Aligned_cols=32 Identities=34% Similarity=0.592 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 53 68888864
No 205
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=75.74 E-value=15 Score=39.49 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=80.5
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
|..|.++++.|+|.|..|..+|+.+..++ |+ ++...|+.. . .+ ....+ .....+|.|
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~f----gm-------~V~~~~~~~----~-~~----~~~~~---~~~~~~l~e 196 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGF----NM-------PILYNARRH----H-KE----AEERF---NARYCDLDT 196 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcC----CC-------EEEEECCCC----c-hh----hHHhc---CcEecCHHH
Confidence 56799999999999999999999875232 54 465566531 0 00 00011 111247999
Q ss_pred HHhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHh-cc-cCCcEEEeeCCCCC--C
Q 007156 430 AVNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY-TW-SQGRAIFASGSPFD--P 501 (615)
Q Consensus 430 ~V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~-~w-T~GraifASGSPF~--p 501 (615)
+++. .|+++=. ....|+|+++.++.|. +.-++.=.| +.++--|+|+ ++ .+|+.-.|.=-=|+ |
T Consensus 197 ll~~--sDvv~lh~plt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP 267 (323)
T PRK15409 197 LLQE--SDFVCIILPLTDETHHLFGAEQFAKMK---SSAIFINAG----RGPVVDENALIAALQKGEIHAAGLDVFEQEP 267 (323)
T ss_pred HHHh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECC----CccccCHHHHHHHHHcCCeeEEEeecCCCCC
Confidence 9987 8887632 1123789999999995 455665443 4555555543 22 45665433211111 1
Q ss_pred cccCCeeeCcCCCccccccchhhH
Q 007156 502 FEYGDNVFVPGQANNAYIFPGLGL 525 (615)
Q Consensus 502 V~~~G~~~~p~Q~NN~yiFPGigl 525 (615)
...+. . --...|+.+-|=+|-
T Consensus 268 ~~~~~-p--L~~~~nvilTPHia~ 288 (323)
T PRK15409 268 LSVDS-P--LLSLPNVVAVPHIGS 288 (323)
T ss_pred CCCCc-h--hhcCCCEEEcCcCCC
Confidence 10010 0 113458888887763
No 206
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.40 E-value=4.7 Score=43.13 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=52.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--cccCC--ccCccccchhhccccCCCCCHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSR--LESLQHFKKPWAHEHEPVKELVDA 430 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL--i~~~R--~~~L~~~k~~fA~~~~~~~~L~e~ 430 (615)
..||.|+|||+-|+.+|..|.+. | . -.+|..|..-. |.+.+ .+.+.. ...+-....-..++.++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l~~~i~~t~d~~~a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVLSDTLRATTDFAEA 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-CcccCCCeEEECCHHHH
Confidence 37899999999999999988752 3 1 23554433210 00000 000110 00000000012467777
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCC
Q 007156 431 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 473 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 473 (615)
++. +|++| ++.+. -+.+++++.++.+ .++-+|..++|--
T Consensus 75 ~~~--aDlVi-lavps-~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 75 ANC--ADVVV-MGVPS-HGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred Hhc--CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 765 56444 33322 3577888877753 3343566777744
No 207
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.24 E-value=14 Score=39.41 Aligned_cols=82 Identities=23% Similarity=0.369 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..|.+++..++|++|.+ ..|.-+|.||.. .| ..+.+|.++
T Consensus 136 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~--------------- 188 (287)
T PRK14173 136 PCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK--------------- 188 (287)
T ss_pred CCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 44566777778889999999999999976 468888888753 23 346666542
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..+.++.+++|+|+
T Consensus 189 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ---------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ---------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347888887 99999999999999999996
No 208
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=75.22 E-value=9.5 Score=43.37 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=53.3
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC---cCCC-----CHHHHhccc------CCcEEEeeCCCC
Q 007156 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS---QSEC-----TAEEAYTWS------QGRAIFASGSPF 499 (615)
Q Consensus 434 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts---~aEc-----tpedA~~wT------~GraifASGSPF 499 (615)
.+|+++|.+.+. .++.+-+..-.++-+|=+-+-.-||.. ..|+ |.++++++. =|+..+-.|
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~--- 186 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK--- 186 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEec---
Confidence 478888874332 234443333333334446777777643 2222 334444331 133222222
Q ss_pred CCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHH
Q 007156 500 DPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAA 544 (615)
Q Consensus 500 ~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA 544 (615)
..||-.+|-..+|.+.=++.+...--++.+-+..+.
T Consensus 187 ---------d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al 222 (507)
T PRK08268 187 ---------DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAIL 222 (507)
T ss_pred ---------CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 346788999999988877777766656666565554
No 209
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=75.07 E-value=21 Score=38.08 Aligned_cols=160 Identities=14% Similarity=0.137 Sum_probs=91.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
+..+.++++.|+|-|..|..+|+.+... |+ +++.+|+.. .. .+... .+ ....+|.|
T Consensus 131 ~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~---~~~~~-~~----~~~~~l~e 186 (312)
T PRK15469 131 EYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS---WPGVQ-SF----AGREELSA 186 (312)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC---CCCce-ee----cccccHHH
Confidence 4568899999999999999999999743 64 577777631 11 11111 11 12357999
Q ss_pred HHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHh--cccCCcEEEeeCCCCCCcc
Q 007156 430 AVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAY--TWSQGRAIFASGSPFDPFE 503 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~--~wT~GraifASGSPF~pV~ 503 (615)
+++. .|+++=+-. ..++|+++.++.|. +..++.=.+ +.++--|+|+ .-..|+.-.|.--=|++--
T Consensus 187 ~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~vVde~aL~~aL~~g~i~gaalDVf~~EP 257 (312)
T PRK15469 187 FLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA----RGVHVVEDDLLAALDSGKVKGAMLDVFSREP 257 (312)
T ss_pred HHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC----CccccCHHHHHHHHhcCCeeeEEecCCCCCC
Confidence 9987 888873211 12578888888885 455666444 4666666655 2245665444322222111
Q ss_pred cCCeeeCc-CCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccC
Q 007156 504 YGDNVFVP-GQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 551 (615)
Q Consensus 504 ~~G~~~~p-~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 551 (615)
... ..| -+..|+++-|=+|- .+. ...|...+++-+-.+.
T Consensus 258 l~~--~~pl~~~~nvi~TPHiag------~t~-~~~~~~~~~~n~~~~~ 297 (312)
T PRK15469 258 LPP--ESPLWQHPRVAITPHVAA------VTR-PAEAVEYISRTIAQLE 297 (312)
T ss_pred CCC--CChhhcCCCeEECCcCCC------CcC-HHHHHHHHHHHHHHHH
Confidence 110 011 24568899998752 222 2345444455544443
No 210
>PLN02602 lactate dehydrogenase
Probab=75.03 E-value=12 Score=40.66 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=76.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCC---CCHHHHHh
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV---KELVDAVN 432 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~---~~L~e~V~ 432 (615)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|-.. ... .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 355 3689999974211111111243332 22221 111 34544 66
Q ss_pred ccCCcEEEEccCCC---CCCCH------------HHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC--CcEEEee
Q 007156 433 AIKPTILIGTSGQG---RTFTK------------EVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 495 (615)
Q Consensus 433 ~vkPtvLIG~S~~~---g~Fte------------evv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~--GraifAS 495 (615)
. .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-+++++. =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 89988665543 3 233 7788888999999999999998 344445555542 1346666
Q ss_pred CC
Q 007156 496 GS 497 (615)
Q Consensus 496 GS 497 (615)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 63
No 211
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.66 E-value=6.1 Score=32.96 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=29.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIV 403 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~ 403 (615)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999998542 4 6899999877666
No 212
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=74.59 E-value=14 Score=40.83 Aligned_cols=81 Identities=17% Similarity=0.263 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch
Q 007156 337 VVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK 415 (615)
Q Consensus 337 VvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~ 415 (615)
+|-.|++.-++..+.+++.+++|++|-+. .|.-+|.||.. .| ..+.+|.++
T Consensus 213 CTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~---------------- 264 (364)
T PLN02616 213 CTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR---------------- 264 (364)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC----------------
Confidence 34456777788889999999999999764 57777777754 23 346666542
Q ss_pred hhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 416 PWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 416 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.++.|+|+
T Consensus 265 --------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 --------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred --------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1358888887 99999999999999999997
No 213
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=74.32 E-value=3 Score=44.25 Aligned_cols=38 Identities=32% Similarity=0.435 Sum_probs=34.0
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++|++.+|+++|+|..|+-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 467899999999999999999999875 75 899999997
No 214
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.29 E-value=9 Score=37.29 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=24.4
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++++.+++|.|| |..|..+++.+++ .| -+++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G-------~~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EG-------ARVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 467789999997 4455555555543 35 258888885
No 215
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=74.27 E-value=15 Score=38.96 Aligned_cols=99 Identities=23% Similarity=0.351 Sum_probs=63.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc----cc--CC---CCC
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH----EH--EP---VKE 426 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~----~~--~~---~~~ 426 (615)
||.|+|| |..|..+|..++. .|+ ...++++|++--+ +.+...+.++.+ .. .. ..+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECCC
Confidence 7999998 9999999998865 354 2479999984211 112222222211 00 11 124
Q ss_pred HHHHHhccCCcEEEEccCCC---C-----------CCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 427 LVDAVNAIKPTILIGTSGQG---R-----------TFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~~~---g-----------~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
. +.+++ .|+.|=+.+.+ | -+-+++++.|.+++...+|+--+||.
T Consensus 67 ~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 67 L-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred H-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 3 45766 88887665532 1 23467788888889999999999997
No 216
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=74.27 E-value=9 Score=41.37 Aligned_cols=109 Identities=21% Similarity=0.398 Sum_probs=68.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CccccCCccCccccchhhccccC--CCCCHHHHHh
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEHE--PVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~-GLi~~~R~~~L~~~k~~fA~~~~--~~~~L~e~V~ 432 (615)
.||.++|||..|-..|-+|+. .++. +.+.|+|.. +...-... +|.+..-..-.+.. ...+ .+.++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~-DL~~~~~~~~~~~~i~~~~~-y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVAL-DLSHAAAPLGSDVKITGDGD-YEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhc-chhhcchhccCceEEecCCC-hhhhc
Confidence 389999999999999888843 3442 489999987 22221111 24332211111110 0023 45566
Q ss_pred ccCCcEEEEccCC---CC-----------CCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007156 433 AIKPTILIGTSGQ---GR-----------TFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTW 486 (615)
Q Consensus 433 ~vkPtvLIG~S~~---~g-----------~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~w 486 (615)
. .|+.+=+.+. +| -.-+++.+++++++...||+-.|||. |..+|
T Consensus 69 ~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 69 G--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred C--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 5 8887744443 34 13467888999999999999999999 77766
No 217
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.72 E-value=9.3 Score=39.96 Aligned_cols=94 Identities=16% Similarity=0.213 Sum_probs=56.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC-
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK- 435 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk- 435 (615)
||-|+|.|..|..+|+.|... | -+++++|++. ++ .+..+.. ......++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~~~~~~~---g~~~~~s~~~~~~~~~~ 59 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----G-------HEVVGYDVNQ----EA---VDVAGKL---GITARHSLEELVSKLEA 59 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----C-------CEEEEEECCH----HH---HHHHHHC---CCeecCCHHHHHHhCCC
Confidence 689999999999999998652 4 3577777641 11 2221110 1122357788887643
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCCCC
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 473 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 473 (615)
+|++|= +.+.....+++++.+.. ..+..+|.=+|+=.
T Consensus 60 advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 60 PRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 566653 22232356677666543 34567888887643
No 218
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=73.71 E-value=2.9 Score=47.90 Aligned_cols=165 Identities=18% Similarity=0.275 Sum_probs=82.1
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCc-cCccccchhhccccCCCCCHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRL-ESLQHFKKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~-~~L~~~k~~fA~~~~~~~~L~e~V 431 (615)
++..|.+++|||+-|++||+-|+.. |+ ++|.+||.--.-+.+-- .+|-.|----++.......-...+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rL 406 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRL 406 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHH
Confidence 5678999999999999999999887 54 79999997533332210 112222111111111112333445
Q ss_pred hccCCcEE-----EEccCCCCCCCHHHHHHHHc--------cCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCC
Q 007156 432 NAIKPTIL-----IGTSGQGRTFTKEVVEAMAS--------LNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSP 498 (615)
Q Consensus 432 ~~vkPtvL-----IG~S~~~g~Fteevv~~Ma~--------~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSP 498 (615)
+++-|.+- +-.-=+|--+.++-++.-.+ ..++-+||=|.- |.-+---|.-.- ...-+.++-.--=
T Consensus 407 k~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtD-sRESRWLPtll~-a~~~KivINaALG 484 (669)
T KOG2337|consen 407 KEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTD-SRESRWLPTLLA-AAKNKIVINAALG 484 (669)
T ss_pred HHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEec-cchhhhhHHHHH-hhhcceEeeeecc
Confidence 55545432 22222222333332222111 236779997753 211222222211 1233444433233
Q ss_pred CCCccc--CCeee----CcCCCccccccchhhHHHHHc
Q 007156 499 FDPFEY--GDNVF----VPGQANNAYIFPGLGLGLIMS 530 (615)
Q Consensus 499 F~pV~~--~G~~~----~p~Q~NN~yiFPGiglG~l~s 530 (615)
|+...+ .|-.. .-+|.-+.-..||==||+.-|
T Consensus 485 FDsylVMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFC 522 (669)
T KOG2337|consen 485 FDSYLVMRHGTGRKEASDDGQSSDLKCINGDQLGCYFC 522 (669)
T ss_pred cceeEEEecCCCCcccccccccccccccCcccceeEeE
Confidence 776643 33221 225666666778888887654
No 219
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=73.46 E-value=7.3 Score=35.74 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=49.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++-+.-........-..+|.++++.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~-- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE-- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH--
T ss_pred EEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc--
Confidence 8999999 99999999998762 343 3467788876111111 1111100000000112567777776
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 468 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 468 (615)
+||+|=.|.+. ...+.++...++ ..|+|..
T Consensus 68 ~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp -SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 88888777543 234555555444 4555554
No 220
>PRK06487 glycerate dehydrogenase; Provisional
Probab=73.40 E-value=73 Score=34.04 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=92.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 430 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 430 (615)
..|.++++.|+|.|..|..+|+++. ++ |+ +|+.+|+.+ ..+ . + ...+|.|+
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~-~f----gm-------~V~~~~~~~-----~~~---~-----~----~~~~l~el 194 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAE-AF----GM-------RVLIGQLPG-----RPA---R-----P----DRLPLDEL 194 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHh-hC----CC-------EEEEECCCC-----Ccc---c-----c----cccCHHHH
Confidence 4689999999999999999999985 32 54 577777652 100 0 0 12379999
Q ss_pred HhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc--ccCCcEEEeeCCCCC--Cc
Q 007156 431 VNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--PF 502 (615)
Q Consensus 431 V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~--wT~GraifASGSPF~--pV 502 (615)
++. .|+++=. ....|.|+++.+..|. +..++.=.| +.++--|+|+- -.+|+.-.|.=-=|+ |.
T Consensus 195 l~~--sDiv~l~lPlt~~T~~li~~~~~~~mk---~ga~lIN~a----RG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~ 265 (317)
T PRK06487 195 LPQ--VDALTLHCPLTEHTRHLIGARELALMK---PGALLINTA----RGGLVDEQALADALRSGHLGGAATDVLSVEPP 265 (317)
T ss_pred HHh--CCEEEECCCCChHHhcCcCHHHHhcCC---CCeEEEECC----CccccCHHHHHHHHHcCCeeEEEeecCCCCCC
Confidence 987 8988732 2234799999999995 556666544 45555555442 235665444221121 11
Q ss_pred ccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccC
Q 007156 503 EYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQV 551 (615)
Q Consensus 503 ~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v 551 (615)
. .+..+.--+..|+++-|=++-.. ..-.+.|...+++.|....
T Consensus 266 ~-~~~pl~~~~~pnvilTPHia~~t-----~e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 266 V-NGNPLLAPDIPRLIVTPHSAWGS-----REARQRIVGQLAENARAFF 308 (317)
T ss_pred C-CCCchhhcCCCCEEECCccccCC-----HHHHHHHHHHHHHHHHHHH
Confidence 1 11111100356899999886222 2223344555555555544
No 221
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.39 E-value=12 Score=39.36 Aligned_cols=106 Identities=17% Similarity=0.163 Sum_probs=59.6
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc-cchhhcc-ccCCCCCHHH
Q 007156 353 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH-FKKPWAH-EHEPVKELVD 429 (615)
Q Consensus 353 L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~-~k~~fA~-~~~~~~~L~e 429 (615)
++..+|+|.|| |-.|..+++.|++ .| .+++.+|++---.....+.+.. .+..+.. +..+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 7788888877765 25 3688787652100000000100 0001111 2222346778
Q ss_pred HHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccC-CCcEEEecC
Q 007156 430 AVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLN-EKPIIFSLS 470 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~-erPIIFaLS 470 (615)
+++..+||++|=+.+.... .+..++++|...+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999988764311 1345567666544 457888654
No 222
>PRK12861 malic enzyme; Reviewed
Probab=73.18 E-value=2.6 Score=50.28 Aligned_cols=88 Identities=23% Similarity=0.316 Sum_probs=55.8
Q ss_pred hcCCCCCceeee---------------eecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCccccc--
Q 007156 269 LGGIRPSACLPV---------------TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILI-- 331 (615)
Q Consensus 269 ~gGI~P~~~LPI---------------~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vli-- 331 (615)
+|.|-|...+|| +||+|||| +|| ++|+ |||++++.+|| .+-.
T Consensus 81 LGdiG~~a~~pvmeGK~~L~~~~agid~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg-~i~lED 139 (764)
T PRK12861 81 LGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINE----TDP---------------DKLV-DIIAGLEPTFG-GINLED 139 (764)
T ss_pred CCCcCcccccchHHHHHHHHhhccCCCccccccCC----CCH---------------HHHH-HHHHHHHhhcC-Cceeee
Confidence 678888888999 69999998 677 7899 99999999995 4433
Q ss_pred --ccchHHHHHHHHHHHHHh-CCC-CC-CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007156 332 --QGTASVVLAGLISAMKFL-GGS-LA-DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 389 (615)
Q Consensus 332 --QGTAaVvLAgll~Alr~~-g~~-L~-d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeA 389 (615)
.-.+-- ++.-+|-. ..+ +. ||. |+|.+..|-+|-. +.- .|.+.+|.
T Consensus 140 ~~~p~~f~----il~~~~~~~~ipvf~DD~q------GTa~v~lA~llna-l~~-~gk~l~d~ 190 (764)
T PRK12861 140 IKAPECFT----VERKLRERMKIPVFHDDQH------GTAITVSAAFING-LKV-VGKSIKEV 190 (764)
T ss_pred ccCchHHH----HHHHHHhcCCCCeeccccc------hHHHHHHHHHHHH-HHH-hCCChhHc
Confidence 333333 33333321 122 22 232 6677777777743 322 46666553
No 223
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.17 E-value=18 Score=38.87 Aligned_cols=82 Identities=18% Similarity=0.334 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++..|.+++.+++|++|.+. .|.-+|.||.. .| ..+.+|.++
T Consensus 139 PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~-------atVtv~hs~--------------- 191 (297)
T PRK14186 139 SCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----AN-------ATVTIAHSR--------------- 191 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC---------------
Confidence 456677788888899999999999999764 67888888754 24 245555442
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-..|.++.|+.++|+
T Consensus 192 ---------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ---------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ---------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 224
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.90 E-value=13 Score=41.46 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=51.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
++++||+|+|.|-.|.++|++|.. .| -++++.|.+-.........|... -.+.. ...+ .+.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~-----~g-------~~v~~~d~~~~~~~~~~~~l~~~-~~~~~---~~~~-~~~~~ 68 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA-----HL-------PAQALTLFCNAVEAREVGALADA-ALLVE---TEAS-AQRLA 68 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH-----cC-------CEEEEEcCCCcccchHHHHHhhc-CEEEe---CCCC-hHHcc
Confidence 567899999999999999999875 35 35788886522110000012110 00100 0111 23444
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEE
Q 007156 433 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 466 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 466 (615)
++|.+|=-++.+ .-.+++.++-. ..-|||
T Consensus 69 --~~d~vV~SpgI~-~~~p~~~~a~~--~~i~i~ 97 (468)
T PRK04690 69 --AFDVVVKSPGIS-PYRPEALAAAA--RGTPFI 97 (468)
T ss_pred --CCCEEEECCCCC-CCCHHHHHHHH--cCCcEE
Confidence 378888666766 34555555432 346776
No 225
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=72.88 E-value=55 Score=37.43 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=94.7
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 349 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 349 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
.|..|.++++.|+|.|..|..+|+.+... |+ +++.+|+.. .+ +...... -...+|.
T Consensus 134 ~g~~l~gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~----~~-~~~~~~g-------~~~~~l~ 189 (526)
T PRK13581 134 MGVELYGKTLGIIGLGRIGSEVAKRAKAF-----GM-------KVIAYDPYI----SP-ERAAQLG-------VELVSLD 189 (526)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC----Ch-hHHHhcC-------CEEEcHH
Confidence 35678999999999999999999998642 54 688888742 11 0000000 0112688
Q ss_pred HHHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCccc
Q 007156 429 DAVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 504 (615)
Q Consensus 429 e~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~ 504 (615)
|+++. .|+++=.- ...++|+++.+..|. +..++.=.|.-.---|.---+|++ .|+.-.|.=-=|++--.
T Consensus 190 ell~~--aDiV~l~lP~t~~t~~li~~~~l~~mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 190 ELLAR--ADFITLHTPLTPETRGLIGAEELAKMK---PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPP 262 (526)
T ss_pred HHHhh--CCEEEEccCCChHhhcCcCHHHHhcCC---CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCC
Confidence 99886 78876432 123689999999995 566777666533222222223333 56654332111110000
Q ss_pred CCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCcc
Q 007156 505 GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQE 554 (615)
Q Consensus 505 ~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~ 554 (615)
.... --+..|+.+-|=+|-.... -...|...+++.+......+
T Consensus 263 ~~~p--L~~~~nvilTPHia~~t~e-----~~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 263 TDSP--LFELPNVVVTPHLGASTAE-----AQENVAIQVAEQVIDALRGG 305 (526)
T ss_pred CCch--hhcCCCeeEcCccccchHH-----HHHHHHHHHHHHHHHHHcCC
Confidence 0111 1234689999988743322 23445555666666655443
No 226
>PRK07340 ornithine cyclodeaminase; Validated
Probab=72.75 E-value=28 Score=36.93 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=64.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCC--CCCHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP--VKELVDA 430 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~--~~~L~e~ 430 (615)
....+++|+|+|..|...++.++.. .++ ++|+++|+. .++ ...+...+.....+ ..+++|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888887653 243 578888884 222 22233333211111 3578899
Q ss_pred HhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHHHH
Q 007156 431 VNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 483 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctpedA 483 (615)
++. .|++|-++... .+|.. .++ +.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHHH
Confidence 985 99999876543 35554 232 444666665322 4678887643
No 227
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=72.74 E-value=4.8 Score=41.41 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=28.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 75 789999997
No 228
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=72.48 E-value=24 Score=37.67 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=66.5
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc---CCCCCHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 430 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 430 (615)
.-.++.|+|+|.-|-.-++.+... .. -++|+++|+. .++ .+.+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 358899999999876655555331 12 3789998883 222 333333332211 224689999
Q ss_pred HhccCCcEEEEcc-CCCCCCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHHHH
Q 007156 431 VNAIKPTILIGTS-GQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEA 483 (615)
Q Consensus 431 V~~vkPtvLIG~S-~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctpedA 483 (615)
++. .|++|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHHH
Confidence 986 99998654 333478888774 556788887544 3689998743
No 229
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=72.31 E-value=4.9 Score=43.26 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 65 799999986
No 230
>PRK06153 hypothetical protein; Provisional
Probab=71.83 E-value=3.5 Score=45.74 Aligned_cols=101 Identities=17% Similarity=0.255 Sum_probs=62.8
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc-cc----CCCC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EH----EPVK 425 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~----~~~~ 425 (615)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+ .|..+ +|+..---|-. +. ....
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D-~Ve~S---NLnRQ~gaf~~~DvGk~~~KVe 236 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD-DFLQH---NAFRSPGAASIEELREAPKKVD 236 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccccccccCCHhHcCCcchHHH
Confidence 578899999999999999999999874 65 799999997 22221 34322111111 11 1112
Q ss_pred CHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE-ecCCCC
Q 007156 426 ELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF-SLSNPT 473 (615)
Q Consensus 426 ~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF-aLSNPt 473 (615)
-+.+.+...+|.+ ......++++-+..+. +-.+|| ++=|..
T Consensus 237 vaa~rl~~in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 237 YFKSRYSNMRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred HHHHHHHHhCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 3666677777754 2334457888877663 445666 344444
No 231
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=71.73 E-value=4.4 Score=38.48 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 359 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 359 v~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|+|||.||+..|-.|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999987754 365 348899987
No 232
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.72 E-value=5.2 Score=40.51 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=24.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
-+|+|+|||.||+..|..|... |+ ++.++|++.-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhccc
Confidence 4799999999999999988763 64 4777777643
No 233
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=71.66 E-value=11 Score=41.57 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=63.0
Q ss_pred CCceEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 354 ADQRFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 354 ~d~riv~~GAGsAG~G-IA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
+.+||+|+|.|-.|++ +|++|.+ .| .+++..|.+-. ...+.|......+.. . .+ .+.++
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~-----~G-------~~V~~~D~~~~---~~~~~l~~~gi~~~~---~-~~-~~~~~ 65 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLN-----LG-------YKVSGSDLKES---AVTQRLLELGAIIFI---G-HD-AENIK 65 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHh-----CC-------CeEEEECCCCC---hHHHHHHHCCCEEeC---C-CC-HHHCC
Confidence 4568999999999999 7998865 36 35788887421 111112111111111 1 11 23343
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc-CCcEEEeeCCCCCCcccCCeee
Q 007156 433 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT-~GraifASGSPF~pV~~~G~~~ 509 (615)
++|.+|=..+.+ .-++++.++-. ..-||+ +.+|. ++.+. +.+.|--||| ||||-
T Consensus 66 --~~d~vv~spgi~-~~~~~~~~a~~--~~i~i~-------~~~e~----~~~~~~~~~~I~ITGT-------nGKTT 120 (461)
T PRK00421 66 --DADVVVYSSAIP-DDNPELVAARE--LGIPVV-------RRAEM----LAELMRFRTSIAVAGT-------HGKTT 120 (461)
T ss_pred --CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------eHHHH----HHHHHccCcEEEEECC-------CCHHH
Confidence 488888666665 34666665543 345664 23333 23332 2367888887 77654
No 234
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=71.63 E-value=5.7 Score=40.45 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=52.5
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCC-----
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV----- 424 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~----- 424 (615)
-++|.+-|++++|+|.-|..+++.|+.+ |+ ++++++|.+ +-+ +...|+.+-+.....
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d---~v~----~snL~rq~~~~~~dig~~Ka 86 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD---TVE----LSNLQRQFLFTEADVGKPKA 86 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC---ccc----ccccCceeeecccccCCcHH
Confidence 4578899999999999999999999875 65 679999986 222 222333333321111
Q ss_pred CCHHHHHhccCCcEEEEccCCCCCCCHHHH
Q 007156 425 KELVDAVNAIKPTILIGTSGQGRTFTKEVV 454 (615)
Q Consensus 425 ~~L~e~V~~vkPtvLIG~S~~~g~Fteevv 454 (615)
....+.++.++|++-+=.-... ++++..
T Consensus 87 ~~a~~~l~~ln~~v~v~~~~~~--l~~~~~ 114 (254)
T COG0476 87 EVAAKALRKLNPLVEVVAYLER--LDEENA 114 (254)
T ss_pred HHHHHHHHHhCCCCeEEEeecc--cChhhH
Confidence 1333556667777665433322 455544
No 235
>PRK06270 homoserine dehydrogenase; Provisional
Probab=71.55 E-value=29 Score=37.33 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=63.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccC---------C
Q 007156 356 QRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHE---------P 423 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~---~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~---------~ 423 (615)
.||.++|.|..|.+++++|.+. +.++.|+. -+=.-++|++|.+.+.+.-++.. ...|+.+.. .
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~Gi~~~~-~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDGLDLEL-ALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCCCCHHH-HHHHHhccCCcccCccccc
Confidence 5899999999999999998653 22222331 12245679999888765312211 122222211 1
Q ss_pred CCCHHHHHhccCCcEEEEccCCC---CCCCHHHHHHHHccCCCcEEE
Q 007156 424 VKELVDAVNAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 424 ~~~L~e~V~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIF 467 (615)
..++.|+++...+||+|=++... +-...++++...+ +.++||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEc
Confidence 13789999888899999877531 2223455444333 4678887
No 236
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=71.55 E-value=25 Score=39.09 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=83.9
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
.||+--++-|++. .|..=+....+|+.|=|--|-|||..+.. .| .++++.+-+ .+.
T Consensus 189 YGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEvD---------PI~ 244 (420)
T COG0499 189 YGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEVD---------PIR 244 (420)
T ss_pred cccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEecC---------chH
Confidence 9999999999874 56677889999999999999999988843 24 345543321 111
Q ss_pred ccchhhcc-ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHHH----Hhc
Q 007156 412 HFKKPWAH-EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE----AYT 485 (615)
Q Consensus 412 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctped----A~~ 485 (615)
..+ |. +.=..-++.||++. .|++|=++|..++.+.|.++.|. .=.|.+ |-- -.-|+..+. +++
T Consensus 245 Ale---A~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~L~~~~~~ 313 (420)
T COG0499 245 ALE---AAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAGLEELAVE 313 (420)
T ss_pred HHH---HhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHHHHHhhhh
Confidence 111 11 22223578999998 89999999999999999999995 334433 322 235666655 455
Q ss_pred cc
Q 007156 486 WS 487 (615)
Q Consensus 486 wT 487 (615)
|.
T Consensus 314 ~~ 315 (420)
T COG0499 314 KR 315 (420)
T ss_pred Hh
Confidence 54
No 237
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=71.34 E-value=1.1e+02 Score=35.03 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=93.0
Q ss_pred hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHH
Q 007156 349 LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELV 428 (615)
Q Consensus 349 ~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~ 428 (615)
.|..|.++++.|+|-|..|-.+|+.+.. .|+ +++.+|+.. .... .. .+ ......+|.
T Consensus 132 ~g~~l~gktvgIiG~G~IG~~vA~~l~~-----fG~-------~V~~~d~~~--~~~~---~~----~~--g~~~~~~l~ 188 (525)
T TIGR01327 132 MGTELYGKTLGVIGLGRIGSIVAKRAKA-----FGM-------KVLAYDPYI--SPER---AE----QL--GVELVDDLD 188 (525)
T ss_pred CccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEECCCC--ChhH---HH----hc--CCEEcCCHH
Confidence 3567999999999999999999999854 254 688888741 1110 00 00 001124799
Q ss_pred HHHhccCCcEEEEc-c---CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCccc
Q 007156 429 DAVNAIKPTILIGT-S---GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEY 504 (615)
Q Consensus 429 e~V~~vkPtvLIG~-S---~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~ 504 (615)
|+++. .|+++=. . ...++|+++.+..|. +..++.=.|.-.---|..--+|++ .|+.-.|.=-=|++=-.
T Consensus 189 ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 261 (525)
T TIGR01327 189 ELLAR--ADFITVHTPLTPETRGLIGAEELAKMK---KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKEPP 261 (525)
T ss_pred HHHhh--CCEEEEccCCChhhccCcCHHHHhcCC---CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCCCC
Confidence 99886 8887622 1 224688999999885 556777666533222222223333 56654442111110000
Q ss_pred CCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCc
Q 007156 505 GDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQ 553 (615)
Q Consensus 505 ~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~ 553 (615)
... .--+..|+.+-|=+|-....+ ...|...+++.+.+....
T Consensus 262 ~~~--pL~~~~nvi~TPHia~~t~e~-----~~~~~~~~~~ni~~~~~g 303 (525)
T TIGR01327 262 TDN--PLFDLDNVIATPHLGASTREA-----QENVATQVAEQVLDALKG 303 (525)
T ss_pred CCC--hhhcCCCeEECCCccccHHHH-----HHHHHHHHHHHHHHHHcC
Confidence 011 113456899999887433322 233444455555555443
No 238
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=71.31 E-value=8.8 Score=40.27 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=57.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc-----ccchhhccc-cCCCCCHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ-----HFKKPWAHE-HEPVKELVD 429 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~-----~~k~~fA~~-~~~~~~L~e 429 (615)
.||.|+|+|..|..+|..+... | .+++++|+..-...-+...+. ..+..+... .....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 4 368888874211000000010 000000000 0001234 4
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCCc
Q 007156 430 AVNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQ 475 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~ 475 (615)
+++ ++|++|=+.... ..+++++.+..+ .+..+|..+.|....
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 454 478877443322 358888888764 455678888887643
No 239
>PRK07877 hypothetical protein; Provisional
Probab=71.14 E-value=9.2 Score=45.57 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=62.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc----------cchhhccc
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH----------FKKPWAHE 420 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~----------~k~~fA~~ 420 (615)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|-+=+ ..+ +|+- .|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999999 899999888764 53 378999998733 221 3444 11111110
Q ss_pred ----cC-C---------C--CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007156 421 ----HE-P---------V--KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 421 ----~~-~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 470 (615)
.+ . + .++.+.+++ .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 00 0 0 145555554 6777766542 22566676667777788888774
No 240
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=71.07 E-value=18 Score=38.61 Aligned_cols=84 Identities=18% Similarity=0.315 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc
Q 007156 334 TASVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH 412 (615)
Q Consensus 334 TAaVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~ 412 (615)
--.+|-+|++.-++..+.+|.+.++|++|.+. -|--+|.||..+ + ..+.+|+++
T Consensus 135 ~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~-----n-------aTVtvcHs~------------- 189 (283)
T COG0190 135 FLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNA-----N-------ATVTVCHSR------------- 189 (283)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhC-----C-------CEEEEEcCC-------------
Confidence 33678899999999999999999999999986 467777777652 3 345566553
Q ss_pred cchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 413 FKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 413 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
.++|.+.+++ +|++|-.-+.++.|+.|+|+
T Consensus 190 -----------T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk 219 (283)
T COG0190 190 -----------TKDLASITKN--ADIVVVAVGKPHFIKADMVK 219 (283)
T ss_pred -----------CCCHHHHhhh--CCEEEEecCCcccccccccc
Confidence 1357788886 99999999999999998886
No 241
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=70.83 E-value=21 Score=44.42 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.3
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALE 377 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~ 377 (615)
+.-.+|||.|+|..|.|.++++...
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~l 225 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLL 225 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhc
Confidence 4468999999999999999988643
No 242
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=70.82 E-value=73 Score=33.38 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 007156 343 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 398 (615)
Q Consensus 343 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~ 398 (615)
+.|++..+. ..+++++|.|+|+.|...+.++. + .|. ++++.+|+
T Consensus 159 ~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak-~----~G~------~~Vi~~~~ 202 (343)
T PRK09880 159 IHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVK-T----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHH-H----cCC------cEEEEEeC
Confidence 455554433 36889999999987766654433 2 353 57887776
No 243
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=70.76 E-value=6.2 Score=42.50 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=28.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+..||||+|+|.||+..|+.|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998753 32 2468888764
No 244
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=70.24 E-value=12 Score=39.33 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||.|+|||+-|+.+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999999753 4 467777774
No 245
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=70.06 E-value=9.4 Score=43.63 Aligned_cols=48 Identities=29% Similarity=0.430 Sum_probs=34.6
Q ss_pred HHHHHHHHH----------hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 340 AGLISAMKF----------LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 340 Agll~Alr~----------~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|++.+++. .+..+++.+++|+|||.+|-+|+..|.+ .| . +++++|+.
T Consensus 354 ~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~-----~G------~-~V~i~nR~ 411 (529)
T PLN02520 354 IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE-----KG------A-RVVIANRT 411 (529)
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH-----CC------C-EEEEEcCC
Confidence 567777753 1446888999999999777777776654 35 2 79998873
No 246
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=69.91 E-value=20 Score=39.35 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc
Q 007156 336 SVVLAGLISAMKFLGGSLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK 414 (615)
Q Consensus 336 aVvLAgll~Alr~~g~~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k 414 (615)
-+|-.|++.=++-.|.+++.+++|++|-+. .|.-+|.||.. .| ..+.+|.++ .
T Consensus 195 PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~-------ATVTicHs~-------T------- 248 (345)
T PLN02897 195 SCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HD-------ATVSTVHAF-------T------- 248 (345)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CEEEEEcCC-------C-------
Confidence 345566777778889999999999999764 57777777754 23 245555542 1
Q ss_pred hhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHH
Q 007156 415 KPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVE 455 (615)
Q Consensus 415 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~ 455 (615)
++|.+.+++ +|++|-..|.++.|+.|+|+
T Consensus 249 ----------~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 249 ----------KDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ----------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357788887 99999999999999999997
No 247
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=69.86 E-value=11 Score=40.04 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=73.8
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEE
Q 007156 360 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTIL 439 (615)
Q Consensus 360 ~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvL 439 (615)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+..-.+.+...-..+-.+.++. .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 355 36899999842212211112443332221111101122466776 8999
Q ss_pred EEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCC--cEEEeeCC
Q 007156 440 IGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQG--RAIFASGS 497 (615)
Q Consensus 440 IG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~G--raifASGS 497 (615)
|=+.+.+ |- .=+++++.+.+++..-+|+-.|||.. ....-++++++= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8766653 21 11367788888999999999999982 555555555411 23666654
No 248
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=69.85 E-value=16 Score=39.35 Aligned_cols=130 Identities=19% Similarity=0.345 Sum_probs=77.9
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc-cccCCccCccccchhhccccC--CCCCH
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL-IVSSRLESLQHFKKPWAHEHE--PVKEL 427 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL-i~~~R~~~L~~~k~~fA~~~~--~~~~L 427 (615)
++.+..||.++|+|..|++||-.|+.. |++ +++.++|-+== +.-... +|+ |-.+|-+... ..++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~M-DLq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMM-DLQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhh-hhc-cccccccCCceEecCcc
Confidence 456678999999999999999988763 663 67889996421 111112 243 3345554321 11233
Q ss_pred HHHHhccCCcEEEEccCCCCC--------------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC-----
Q 007156 428 VDAVNAIKPTILIGTSGQGRT--------------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ----- 488 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~--------------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~----- 488 (615)
. +-. .-++.|=+.+..+- .=+.+|..+.++.+.-+++--|||. |.++|--
T Consensus 84 ~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLSg 152 (332)
T KOG1495|consen 84 S-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLSG 152 (332)
T ss_pred c-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHcC
Confidence 2 111 24555544443322 1246777788899999999999998 6665521
Q ss_pred --CcEEEeeCCCCCCcc
Q 007156 489 --GRAIFASGSPFDPFE 503 (615)
Q Consensus 489 --GraifASGSPF~pV~ 503 (615)
-..+|.||.=.+...
T Consensus 153 fP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 153 FPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CcccceeccCcCccHHH
Confidence 134566665555443
No 249
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.76 E-value=5.9 Score=42.20 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=28.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+++|+|.-|.-+++.|+.. |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 76 799999987
No 250
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=69.69 E-value=20 Score=39.16 Aligned_cols=101 Identities=17% Similarity=0.245 Sum_probs=64.7
Q ss_pred ccchHHHHHHHHHHHHHh--------------------CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007156 332 QGTASVVLAGLISAMKFL--------------------GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 391 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~--------------------g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk 391 (615)
--||-.+++-+|.++|-. |..+.++||.|+|+|+.|..||+.|... | .
T Consensus 119 ~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~ 186 (336)
T KOG0069|consen 119 DDVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------C 186 (336)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------c
Confidence 456666677777777632 3568899999999999999999999663 2 2
Q ss_pred eEEEEccCCccccCCcc-CccccchhhccccCCCCCHHHHHhccCCcEEEEccCC----CCCCCHHHHHHHH
Q 007156 392 KIWLVDSKGLIVSSRLE-SLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQ----GRTFTKEVVEAMA 458 (615)
Q Consensus 392 ~i~lvD~~GLi~~~R~~-~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~----~g~Fteevv~~Ma 458 (615)
+|. +.+|.. .....+..++. .-++.|...+ .|+++=..-- .++|+++.+..|.
T Consensus 187 ~i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk 244 (336)
T KOG0069|consen 187 VIL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK 244 (336)
T ss_pred eee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence 333 333311 11223334443 2457777765 8888744321 2689999999995
No 251
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=68.66 E-value=7.3 Score=38.08 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=50.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc--------------C
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--------------E 422 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--------------~ 422 (615)
||.|+|||..|.|||-+++.+ | -++.++|.+----..-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999864 5 4788999852211000000111000111100 0
Q ss_pred CCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007156 423 PVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 468 (615)
Q Consensus 423 ~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 468 (615)
-..+|.+++ ..|.+|=.-.-.--.++++.+.+.+.+..=.||+
T Consensus 69 ~~~dl~~~~---~adlViEai~E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 69 FTTDLEEAV---DADLVIEAIPEDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp EESSGGGGC---TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred cccCHHHHh---hhheehhhccccHHHHHHHHHHHHHHhCCCceEE
Confidence 113566655 3677776543332356778888887765555553
No 252
>PRK06932 glycerate dehydrogenase; Provisional
Probab=67.97 E-value=23 Score=37.72 Aligned_cols=138 Identities=16% Similarity=0.202 Sum_probs=82.5
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
+..|.++++.|+|-|..|-.+|+++.. -|+ +++.+|+..- ... . ....+|.|
T Consensus 142 ~~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~~------~~~---~-------~~~~~l~e 193 (314)
T PRK06932 142 ITDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKGA------SVC---R-------EGYTPFEE 193 (314)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCcc------ccc---c-------cccCCHHH
Confidence 357899999999999999999998843 264 5666665310 000 0 01247999
Q ss_pred HHhccCCcEEEEc----cCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc--ccCCcEEEeeCCCCC--C
Q 007156 430 AVNAIKPTILIGT----SGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGSPFD--P 501 (615)
Q Consensus 430 ~V~~vkPtvLIG~----S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~--wT~GraifASGSPF~--p 501 (615)
+++. .|+++=. ....|+|+++.+..|. +..++.=.| +.++-=|+|+. -.+|+.-.|.--=|+ |
T Consensus 194 ll~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP 264 (314)
T PRK06932 194 VLKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTG----RGPLVDEQALLDALENGKIAGAALDVLVKEP 264 (314)
T ss_pred HHHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCccEEEEecCCCCC
Confidence 9987 8988832 2334799999999995 566666554 45555555442 135665444322221 1
Q ss_pred cccCCeeeC-cCCCccccccchhh
Q 007156 502 FEYGDNVFV-PGQANNAYIFPGLG 524 (615)
Q Consensus 502 V~~~G~~~~-p~Q~NN~yiFPGig 524 (615)
..-+.--.. --+..|+++-|=+|
T Consensus 265 ~~~~~pl~~~~~~~pnvilTPHia 288 (314)
T PRK06932 265 PEKDNPLIQAAKRLPNLLITPHIA 288 (314)
T ss_pred CCCCChhhHhhcCCCCEEECCccc
Confidence 111100000 01357888888876
No 253
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=67.66 E-value=15 Score=38.95 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc----cCCCCCHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 429 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 429 (615)
.-.++.|+|+|.=|..-++.++.. .. -++|.+.|+. .+ +...+...+.+. .....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~------i~~v~v~~r~----~~---~a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YN------PKRIRVYSRN----FD---HARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HH---HHHHHHHHHHHhcCCcEEEeCCHHH
Confidence 458999999999888777666653 23 3788888873 22 234444444332 122468999
Q ss_pred HHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCcEEEec-CCCCCcCCCCHHHH
Q 007156 430 AVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 483 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEctpedA 483 (615)
+++. .||++-++.. ..+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9987 9999976433 34788887762 2345554 33224688888743
No 254
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=67.43 E-value=20 Score=40.43 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=74.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHH-HHH-hcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 356 QRFLFLGA-GEAGTGIAELIALE-ISK-QTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~-~~~-~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
.||.|+|| |..|..+|-.|+.. +.. .+|+ -.++.++|.+-=...+-.-+|.+..-++-++..-..+-.+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988652 100 0132 2478899974222221111243333233221110123346677
Q ss_pred ccCCcEEEEccCCC---CC-----------CCHHHHHHHHc-cCCCcEEEecCCCCCcCCCCHHHHhcccC--CcEEEee
Q 007156 433 AIKPTILIGTSGQG---RT-----------FTKEVVEAMAS-LNEKPIIFSLSNPTSQSECTAEEAYTWSQ--GRAIFAS 495 (615)
Q Consensus 433 ~vkPtvLIG~S~~~---g~-----------Fteevv~~Ma~-~~erPIIFaLSNPts~aEctpedA~~wT~--GraifAS 495 (615)
+ .|++|=+.+.+ |- .=+++.+.+.+ .+..-||+-.|||- ....--+++++. -+-+|.|
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv---Dv~t~v~~k~sg~~~~rViGt 250 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC---NTNALICLKNAPNIPAKNFHA 250 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH---HHHHHHHHHHcCCCCcceEEe
Confidence 6 88888666653 21 12467777778 58999999999997 233333444431 1335555
Q ss_pred CC
Q 007156 496 GS 497 (615)
Q Consensus 496 GS 497 (615)
|.
T Consensus 251 gT 252 (444)
T PLN00112 251 LT 252 (444)
T ss_pred ec
Confidence 54
No 255
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=67.36 E-value=7.6 Score=41.73 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=28.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+++|+|.-|+-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 65 899999987
No 256
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=67.31 E-value=11 Score=42.50 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=62.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc---ccCCCCCHHHHHhc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAVNA 433 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V~~ 433 (615)
+|-|+|.|.-|.++|..|... |. ++++.|++ .++ .+++.+.-.+ ......++.|+++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVNS 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHhc
Confidence 689999999999999999753 53 58888873 222 2222211000 01124689999986
Q ss_pred c-CCcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecCCCC
Q 007156 434 I-KPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLSNPT 473 (615)
Q Consensus 434 v-kPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLSNPt 473 (615)
. +|+++| +.-+++...++|++.+.. ..+..||.=+||=.
T Consensus 64 l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 64 LKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred CCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 588555 343444567888877764 35678898899843
No 257
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=67.20 E-value=15 Score=41.42 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=61.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc--cCCCCCHHHHHhcc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELVDAVNAI 434 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~e~V~~v 434 (615)
.|-|+|.|..|..+|..|+.. |. ++++.|+. .+ ..+..++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~---~~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE---KTDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH---HHHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999753 53 57887773 21 122222221111 11235788888654
Q ss_pred -CCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCC
Q 007156 435 -KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 471 (615)
Q Consensus 435 -kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 471 (615)
+|+++| ++-+++...++|++.+..+ .+.-||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4444556678888887654 56779999988
No 258
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=66.80 E-value=24 Score=36.64 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=53.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTN-MPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~G-ls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
+||.|+|+|.-|..+|..|... | ++ ..+++++|+.- . +.+......+. ......+..|+++.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~~---~---~~~~~l~~~~~-~~~~~~~~~e~~~~- 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSSK---N---EHFNQLYDKYP-TVELADNEAEIFTK- 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCCc---H---HHHHHHHHHcC-CeEEeCCHHHHHhh-
Confidence 4799999999999999988653 3 21 24678777631 0 11111111110 00112456666664
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPt 473 (615)
+|++| ++..+ ...+++++.++.+ .+..+|..++|-.
T Consensus 65 -aDvVi-lavpp-~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 65 -CDHSF-ICVPP-LAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred -CCEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 67666 44433 3455666666532 2334555566654
No 259
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=66.55 E-value=1.1e+02 Score=34.16 Aligned_cols=163 Identities=17% Similarity=0.234 Sum_probs=94.2
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
|..|.+.++.|+|-|..|..+|+.+.. .|+ +++.+|+.. + ..... + ....+|.|
T Consensus 146 ~~~L~gktvGIiG~G~IG~~vA~~~~~-----fGm-------~V~~~d~~~-----~-~~~~~-----~---~~~~~l~e 199 (409)
T PRK11790 146 SFEVRGKTLGIVGYGHIGTQLSVLAES-----LGM-------RVYFYDIED-----K-LPLGN-----A---RQVGSLEE 199 (409)
T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECCCc-----c-cccCC-----c---eecCCHHH
Confidence 567999999999999999999998854 264 688888631 1 00100 1 11347999
Q ss_pred HHhccCCcEEEEcc----CCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhc--ccCCcEEEeeCC---CCC
Q 007156 430 AVNAIKPTILIGTS----GQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYT--WSQGRAIFASGS---PFD 500 (615)
Q Consensus 430 ~V~~vkPtvLIG~S----~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~--wT~GraifASGS---PF~ 500 (615)
+++. .|+++=.- ...++|+++.+..|. +.-++.-.| +.++-=|+|+. ...|+ |.+-|. +.+
T Consensus 200 ll~~--sDiVslh~Plt~~T~~li~~~~l~~mk---~ga~lIN~a----RG~~vde~aL~~aL~~g~-i~gaalDVf~~E 269 (409)
T PRK11790 200 LLAQ--SDVVSLHVPETPSTKNMIGAEELALMK---PGAILINAS----RGTVVDIDALADALKSGH-LAGAAIDVFPVE 269 (409)
T ss_pred HHhh--CCEEEEcCCCChHHhhccCHHHHhcCC---CCeEEEECC----CCcccCHHHHHHHHHcCC-ceEEEEcCCCCC
Confidence 9987 88876321 123689999999995 455666554 35555554431 13566 333221 112
Q ss_pred CcccCCeeeC-cCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCc
Q 007156 501 PFEYGDNVFV-PGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQ 553 (615)
Q Consensus 501 pV~~~G~~~~-p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~ 553 (615)
|..-+..... --+..|+++-|=+|-....+ ...|...+++.+......
T Consensus 270 P~~~~~~~~~pL~~~~nvilTPHia~~t~ea-----~~~~~~~~~~nl~~~~~~ 318 (409)
T PRK11790 270 PKSNGDPFESPLRGLDNVILTPHIGGSTQEA-----QENIGLEVAGKLVKYSDN 318 (409)
T ss_pred CCCccccccchhhcCCCEEECCcCCCCHHHH-----HHHHHHHHHHHHHHHHcC
Confidence 2211100001 12456899999987443222 234555566666655543
No 260
>PRK06823 ornithine cyclodeaminase; Validated
Probab=66.14 E-value=42 Score=35.96 Aligned_cols=106 Identities=11% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc---cCCCCCHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKELVDA 430 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~L~e~ 430 (615)
.-.++.++|+|.-+-..++.++.. .. -++|+++|+. .++ ...+...+.+. .....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TD------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988887776653 12 3789988874 222 22333222211 1123689999
Q ss_pred HhccCCcEEEEccC-CCCCCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHHHHh
Q 007156 431 VNAIKPTILIGTSG-QGRTFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEEAY 484 (615)
Q Consensus 431 V~~vkPtvLIG~S~-~~g~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctpedA~ 484 (615)
++. .|+++-+++ ...+|..++++ +.-.|-+...-+ .+.|+.++-..
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l~ 237 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELVA 237 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHHh
Confidence 987 999987643 23478888886 455677776432 36899986643
No 261
>PRK13938 phosphoheptose isomerase; Provisional
Probab=66.12 E-value=18 Score=36.21 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh-hcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEE-TRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~ee-Ark~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
.+.||.|+|.|..| .+|..+...|.. ++..+- +-..+-+......++.-- + =..+...|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~~-n-d~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAVA-N-DYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHhh-c-cccHHHHHHHH------HHhcC-
Confidence 57899999999997 677777766532 111100 001122222211111000 0 01122222221 22122
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCC
Q 007156 433 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNP 472 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNP 472 (615)
-+-|++|++|..|. |+++++.+. +...-|+|.=-+||
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 25789999999875 999999874 33444544433333
No 262
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=65.96 E-value=11 Score=42.52 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=29.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+++|||..|+-+++.|+.. |+.-.+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 552211 2789999987
No 263
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=65.94 E-value=7.2 Score=39.03 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----AN-------LKTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecc
Confidence 68999999999999998754 35 368999975
No 264
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=65.88 E-value=5.4 Score=41.97 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=34.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcccc
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVS 404 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~ 404 (615)
+|++++|+++|.|-.|--+++.|+. .|+ .+|.++|-+-+=.+
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~vT 68 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEeccccccc
Confidence 5889999999999999888888875 476 89999999866443
No 265
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=65.75 E-value=32 Score=35.92 Aligned_cols=94 Identities=15% Similarity=0.173 Sum_probs=50.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
.||.|+|+|..|..+|..+... |. ..+++++|++. + .+...++.-. ......++.++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~~----~---~~~~a~~~g~-~~~~~~~~~~~~~~-- 66 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRSA----E---TRARARELGL-GDRVTTSAAEAVKG-- 66 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECCH----H---HHHHHHhCCC-CceecCCHHHHhcC--
Confidence 6899999999999999888653 43 14688888742 1 1111111000 00112356666654
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCC
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSN 471 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSN 471 (615)
+|++| ++.+. ...+++++.+... .+..+|+-++.
T Consensus 67 aDvVi-iavp~-~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 67 ADLVI-LCVPV-GASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 67766 33323 2345666666532 33445555443
No 266
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=65.67 E-value=29 Score=34.88 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=41.9
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
||++.|| |-.|-.+++.|.+ .| .+++.+++. .. ++. +..++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~-d~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QL-DLT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------cc-CCC-----------CHHHHHHHHHhCC
Confidence 6899997 9888888888764 24 367777763 11 121 1245778888889
Q ss_pred CcEEEEccCCC
Q 007156 436 PTILIGTSGQG 446 (615)
Q Consensus 436 PtvLIG~S~~~ 446 (615)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 267
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=65.58 E-value=19 Score=38.02 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=72.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC-CccccCCccCccccchhhcccc-CCCCCHHHHHhccC
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK-GLIVSSRLESLQHFKKPWAHEH-EPVKELVDAVNAIK 435 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~-GLi~~~R~~~L~~~k~~fA~~~-~~~~~L~e~V~~vk 435 (615)
|.|+|||..|..+|-.|+. .|+ -..+.++|.+ .++..-. .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999976654 365 2589999973 2221111 13544433321110 01234 456766
Q ss_pred CcEEEEccCCC---CC-----------CCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc--CCcEEEeeCC
Q 007156 436 PTILIGTSGQG---RT-----------FTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS--QGRAIFASGS 497 (615)
Q Consensus 436 PtvLIG~S~~~---g~-----------Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT--~GraifASGS 497 (615)
.|++|=+.+.+ |- +=+++.+.+.+++..-+|+=.|||. ++..+-+++++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887555543 21 1145777888899999999999998 34444555442 1233666653
No 268
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=65.53 E-value=34 Score=31.87 Aligned_cols=123 Identities=24% Similarity=0.308 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhh
Q 007156 310 YAELLHEFMTAVKQNYGERILIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEET 389 (615)
Q Consensus 310 y~~~vdeFv~Av~~~~gp~vliQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeA 389 (615)
|++-+.+-++++.+. |-...-.+|-++..... ++.||.++|+|..+ .+|..+...+....++.. -.
T Consensus 2 y~~~~~~~l~~v~~~-------~~~~i~~aa~~i~~~~~-----~gg~i~~~G~G~S~-~~a~~~~~~~~~~~~~~~-~~ 67 (138)
T PF13580_consen 2 YFDEIQELLEAVEET-------QAEAIEKAADLIAEALR-----NGGRIFVCGNGHSA-AIASHFAADLGGLFGVNR-IL 67 (138)
T ss_dssp HHHHHHHHHHHHHHH-------SHHHHHHHHHHHHHHHH-----TT--EEEEESTHHH-HHHHHHHHHHHCHSSSTS-SS
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----CCCEEEEEcCchhh-hHHHHHHHHHhcCcCCCc-cc
Confidence 454444444444322 34445555566655554 45689999999988 445555544432111100 00
Q ss_pred cCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHH
Q 007156 390 RKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMA 458 (615)
Q Consensus 390 rk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma 458 (615)
...+.+.+ +.+.... .++ ++...|++ .+.+..+.-+-|+||+.|+.|+ |+-+|+++.
T Consensus 68 ~~~~~l~~-~~~~~~~--~~~-~~~~~~~~------~~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 68 LPAIALND-DALTAIS--NDL-EYDEGFAR------QLLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp -SEEETTS-THHHHHH--HHT-TGGGTHHH------HHHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred cccccccc-chHhhhh--ccc-chhhHHHH------HHHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 01111111 1100000 001 11122322 2444433335799999999887 888998874
No 269
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=65.45 E-value=28 Score=36.73 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.2
Q ss_pred hCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc----------chhh
Q 007156 349 LGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----------KKPW 417 (615)
Q Consensus 349 ~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~----------k~~f 417 (615)
++..++..||+|.|| |-.|..+++.|+.. | -+++.+|+. ..+....+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 345677789999997 99998888888752 4 357778763 11110111111 0011
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCcEEEecC
Q 007156 418 AH-EHEPVKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 418 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 470 (615)
-. +..+...|.++++. ||++|=+.+.... .|..+++.+.+..-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 21222356677774 9999988875432 1457888887766578998754
No 270
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=65.36 E-value=12 Score=40.55 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~ 376 (615)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 271
>PRK00536 speE spermidine synthase; Provisional
Probab=65.30 E-value=11 Score=39.59 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=59.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCC-CCHHHHHhcc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPV-KELVDAVNAI 434 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~-~~L~e~V~~v 434 (615)
.||+|+|+|-.| +++-++.. + +++.|||-++-|++--+.-++..+..|..+.-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 899999999985 66666543 1 3899999999777543333555444343221111 1122211 12
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPF 499 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF 499 (615)
+-||+|-=| +|+++-.+.+. .+++ -+|-.+.-+||||
T Consensus 139 ~fDVIIvDs----~~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQ----EPDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcC----CCChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 578888654 36766665543 2332 2566677778887
No 272
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.74 E-value=18 Score=36.68 Aligned_cols=103 Identities=18% Similarity=0.324 Sum_probs=58.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-ccCCccccCCccCccccchhhccc-cCCCCCHHHHHhcc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV-DSKGLIVSSRLESLQHFKKPWAHE-HEPVKELVDAVNAI 434 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lv-D~~GLi~~~R~~~L~~~k~~fA~~-~~~~~~L~e~V~~v 434 (615)
||.|+|.|.-|..+|+-|++. |.- -..+|+++ |+. .++ .+ .+... .....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~~----~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---RD----VFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---HH----HHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998753 420 02467877 552 111 11 12111 1112467787775
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCCcCCCCHHHHhccc
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTSQSECTAEEAYTWS 487 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts~aEctpedA~~wT 487 (615)
.|++| ++..+ ...+++++.++.. .+..+|..+++.+ +.++..+|.
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~-----~~~~l~~~~ 107 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI-----TLADLQEWA 107 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC-----cHHHHHHHc
Confidence 67665 33333 4477887776543 3445666665544 344444554
No 273
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=64.37 E-value=8.5 Score=41.38 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999998443 123 589999986443
No 274
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=64.22 E-value=8.6 Score=41.21 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=27.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.+|+|+|||-+|+.+|..|.+. | .++.++|+.-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999998752 5 4789999864
No 275
>PRK06046 alanine dehydrogenase; Validated
Probab=64.12 E-value=45 Score=35.59 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=65.2
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc----cCCCCCHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 429 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 429 (615)
.-.++.|+|+|..|...++.+... .+ -++++++|++ .+ ..+.+.+.+.+. .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~----~~---~~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRT----KS---SAEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCC----HH---HHHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988777666432 23 3789999885 12 123333333211 111357888
Q ss_pred HHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCcEEEec-CCCCCcCCCCHHHH
Q 007156 430 AVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 483 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEctpedA 483 (615)
+++ .|+++-++.. ..+|..++++ +.-.|-++ |+-..+.|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHHH
Confidence 885 7998876542 3478888775 33346666 44446799998743
No 276
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=63.78 E-value=17 Score=35.51 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+++.+++|.|+ |..|..+|+.+++ .| -+++++|++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 46789999996 6666667766653 35 368888774
No 277
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=63.50 E-value=13 Score=33.18 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=49.2
Q ss_pred CcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEE
Q 007156 362 GAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIG 441 (615)
Q Consensus 362 GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG 441 (615)
|.|..|.+++++|...-.. .+ -+=..++|+++++...+ ...........++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKDW--------AASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETTH--------HHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhhh--------hhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999764211 01 24466778774444331 111112233468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 442 TSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 442 ~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
+++ ....++-+.+.+. +...+|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 955 3344444444454 3455554
No 278
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.48 E-value=13 Score=41.14 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhCccc--cc-ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007156 314 LHEFMTAVKQNYGERI--LI-QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 390 (615)
Q Consensus 314 vdeFv~Av~~~~gp~v--li-QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeAr 390 (615)
.|+|+.++.+.+|..+ .+ +--+ -+..++.-....|...|+.++|-..-.+++++.|.+ .|+....
T Consensus 264 t~~~l~~l~~~~g~~~~~~i~~er~-----~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~~-- 331 (435)
T cd01974 264 TDEFLMALSELTGKPIPEELEEERG-----RLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPVH-- 331 (435)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHH-----HHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEEE--
Confidence 4677788888887543 22 1111 123444444456788999999988888999999874 3763211
Q ss_pred CeEEEEccCCccccCCccCccccchhhcc-----------ccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHc
Q 007156 391 KKIWLVDSKGLIVSSRLESLQHFKKPWAH-----------EHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMAS 459 (615)
Q Consensus 391 k~i~lvD~~GLi~~~R~~~L~~~k~~fA~-----------~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~ 459 (615)
.+.+. ..+...+.-+.+.. ...+...+++.++..+||++||-|-. +.+|+
T Consensus 332 ---~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~ 392 (435)
T cd01974 332 ---VLTGN-------GGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIAR 392 (435)
T ss_pred ---EEeCC-------CCHHHHHHHHHHHhhcCCCCCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHH
Confidence 11211 11101111111111 11223457788889999999997751 23333
Q ss_pred cCCCcEEEecCCCC
Q 007156 460 LNEKPIIFSLSNPT 473 (615)
Q Consensus 460 ~~erPIIFaLSNPt 473 (615)
...-|.| ..+.|.
T Consensus 393 ~~gip~v-~~~~P~ 405 (435)
T cd01974 393 DTDIPLV-RFGFPI 405 (435)
T ss_pred HhCCCEE-EeeCCc
Confidence 3356653 456665
No 279
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=63.26 E-value=4.7 Score=38.35 Aligned_cols=104 Identities=19% Similarity=0.243 Sum_probs=57.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
.||-|+|.|..|.++|+.|... | -+++..|+. . +..+.....-+ ....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g-------~~v~~~d~~----~---~~~~~~~~~g~---~~~~s~~e~~~~-- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----G-------YEVTVYDRS----P---EKAEALAEAGA---EVADSPAEAAEQ-- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----T-------TEEEEEESS----H---HHHHHHHHTTE---EEESSHHHHHHH--
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----C-------CeEEeeccc----h---hhhhhhHHhhh---hhhhhhhhHhhc--
Confidence 4899999999999999999653 5 368888863 1 11222222212 234689999998
Q ss_pred CcEEEEccCCCCCCCHHHHHH--HH-ccCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007156 436 PTILIGTSGQGRTFTKEVVEA--MA-SLNEKPIIFSLSNPTSQSECTAEEAYTW 486 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~--Ma-~~~erPIIFaLSNPts~aEctpedA~~w 486 (615)
.|++|=+-..+ .=.++++.. +. ...+..||.=+|+-. +|.+-+-+-.+
T Consensus 58 ~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~~ 108 (163)
T PF03446_consen 58 ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAERL 108 (163)
T ss_dssp BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHHH
T ss_pred ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhhh
Confidence 58777432211 113445444 33 334666777777655 65555544443
No 280
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=63.00 E-value=1.8e+02 Score=30.67 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 398 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~ 398 (615)
..++++++|+|..|+..+.++... .|- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~----~g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQI----YPE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHh----cCC------CcEEEEeC
Confidence 478999999998876665555432 131 46888876
No 281
>PRK08618 ornithine cyclodeaminase; Validated
Probab=62.97 E-value=20 Score=38.12 Aligned_cols=102 Identities=13% Similarity=0.213 Sum_probs=59.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc----cCCCCCHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVKELVD 429 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~~L~e 429 (615)
...++.|+|+|..|-.++..+... .++ ++|.++|+. .+| ...+...+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655432 243 789999884 222 22333333211 112467888
Q ss_pred HHhccCCcEEEEccCCC-CCCCHHHHHHHHccCCCcEEEecC-CCCCcCCCCHH
Q 007156 430 AVNAIKPTILIGTSGQG-RTFTKEVVEAMASLNEKPIIFSLS-NPTSQSECTAE 481 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~-g~Fteevv~~Ma~~~erPIIFaLS-NPts~aEctpe 481 (615)
+++. .|++|-++..+ ..|+ ++++ ..--|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 8875 89988665433 2344 4442 344465553 22246788873
No 282
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=62.95 E-value=11 Score=36.22 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|++.+|||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 58899999999999999999888763 4 477777653
No 283
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=62.91 E-value=14 Score=40.33 Aligned_cols=95 Identities=23% Similarity=0.392 Sum_probs=53.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc--cccCCccCccccchhhccc------cCCCCCH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL--IVSSRLESLQHFKKPWAHE------HEPVKEL 427 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL--i~~~R~~~L~~~k~~fA~~------~~~~~~L 427 (615)
.+|.++|||+=|+++|..+.+. |- .=++|..|.+=. |..+|. ..+|... ..-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999763 41 236777664310 111111 1122211 1112578
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHc-cCCCcEEEecC
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMAS-LNEKPIIFSLS 470 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~-~~erPIIFaLS 470 (615)
.++++. --.+|++++++ +-.++++.|.. ..++.+|.-+|
T Consensus 66 ~~a~~~-ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG-ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc-CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 888885 12345566654 47778877752 23444444444
No 284
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=62.72 E-value=5 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALE 377 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~ 377 (615)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999764
No 285
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=62.60 E-value=11 Score=37.66 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=29.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 398 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~ 398 (615)
+|++.++||+|+|..|.-.++.|+.+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 57899999999999998888888763 3 47888875
No 286
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=62.13 E-value=8.8 Score=41.65 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 79999999999999988864 354 46666664
No 287
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.63 E-value=38 Score=37.23 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=64.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc--chhhccccCCCCCHHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~--k~~fA~~~~~~~~L~e~V 431 (615)
+|-.|+|+|.|-.|+++|++|.+ .|. ++...|.+-- ....+.|... ..++... ..+ .+.+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~-----~G~-------~v~~~D~~~~--~~~~~~l~~~~~g~~~~~~---~~~-~~~~ 66 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLAR-----QGI-------PFAVMDSREQ--PPGLDTLAREFPDVELRCG---GFD-CELL 66 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHh-----CCC-------eEEEEeCCCC--chhHHHHHhhcCCcEEEeC---CCC-hHHh
Confidence 57789999999999998888865 363 6788886421 0000112110 1111100 012 2334
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~ 509 (615)
+ ++|++|=.++.+ --.+++.++.. ...||+ +.+|.- +.....+.|--||| ||||-
T Consensus 67 ~--~~d~vV~sp~i~-~~~p~~~~a~~--~~i~i~-------~~~el~----~~~~~~~~I~VTGT-------~GKTT 121 (448)
T PRK03803 67 V--QASEIIISPGLA-LDTPALRAAAA--MGIEVI-------GDIELF----AREAKAPVIAITGS-------NGKST 121 (448)
T ss_pred c--CCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHHH----HHhcCCCEEEEECC-------CcHHH
Confidence 4 478887666655 34677776654 456776 233332 22235678888997 77654
No 288
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=61.62 E-value=5.6 Score=41.90 Aligned_cols=36 Identities=11% Similarity=0.246 Sum_probs=27.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5899999999999988875421 0 1358999997654
No 289
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=61.43 E-value=9.5 Score=40.85 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=24.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|+|+|||.||...|..|.+ .|+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~-----~G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR-----AGI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 58999999999999988865 354 46666665
No 290
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.29 E-value=38 Score=38.13 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=50.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
+.++|++|+|.|..|++.+++|.. .| .++++.|.+ ..+ +...++.-++- .......+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G-------~~v~~~D~~----~~~---~~~l~~~g~~~-~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FG-------ARPTVCDDD----PDA---LRPHAERGVAT-VSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CC-------CEEEEEcCC----HHH---HHHHHhCCCEE-EcCcchHhHhh
Confidence 356899999999999999987654 35 367778854 111 11111100000 01112334455
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEE
Q 007156 433 AIKPTILIGTSGQGRTFTKEVVEAMASLNEKPII 466 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPII 466 (615)
. +|++|=.++.+ .-.+++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 4 78888666766 34566655544 356776
No 291
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=61.09 E-value=2.3e+02 Score=30.77 Aligned_cols=139 Identities=17% Similarity=0.145 Sum_probs=80.1
Q ss_pred HHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC--------cCCCCHHHHhcccCCcEEEee-CCC
Q 007156 428 VDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFAS-GSP 498 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts--------~aEctpedA~~wT~GraifAS-GSP 498 (615)
.++=+.++|+++|..++.+ +.-.-+.+=.++-||=|.+=.-||.. ..+.|.+++++-+ ..+..+ |-
T Consensus 102 ~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK- 176 (307)
T COG1250 102 AELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK- 176 (307)
T ss_pred HHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC-
Confidence 3444455799999988754 33333332225555668888899873 3567777766532 111111 21
Q ss_pred CCCcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCChhhhHHHHHHH
Q 007156 499 FDPFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKNIRKISAHIAAE 578 (615)
Q Consensus 499 F~pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ir~vs~~VA~a 578 (615)
.||. ..+.||-.=|-..+|.+.-+..+..---.|.+.+-++.+.-+.+ . +-|+.-.+-+-..+...
T Consensus 177 -~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~------p----mGpf~l~D~~GlD~~~~ 242 (307)
T COG1250 177 -TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGL------P----MGPFELADLIGLDVMLH 242 (307)
T ss_pred -CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCC------C----ccHHHHHHHHhHHHHHH
Confidence 1121 24678888888888888777777666657777777666653322 1 22444444555555666
Q ss_pred HHHHHHH
Q 007156 579 VAAKAYE 585 (615)
Q Consensus 579 Va~~A~~ 585 (615)
|++..++
T Consensus 243 i~~~~~~ 249 (307)
T COG1250 243 IMKVLNE 249 (307)
T ss_pred HHHHHHH
Confidence 6555554
No 292
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=60.54 E-value=31 Score=35.82 Aligned_cols=128 Identities=20% Similarity=0.356 Sum_probs=64.8
Q ss_pred eEEEEeeCcccccCCCCCCcccccchhhHHHHhhhcCCCCCceeeeeecCCCCcccccc------Ccccccc----cccC
Q 007156 235 QVIVVTDGERILGLGDLGCHGMGIPVGKLSLYTALGGIRPSACLPVTIDVGTNNEKLLD------DEFYIGL----RQKR 304 (615)
Q Consensus 235 ~viVVTDG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnne~LL~------Dp~YlGl----r~~R 304 (615)
++.+|||.+.=| |..-+. .. ||. .+|+.+-+| + ++..+ +.||-=+ ..+.
T Consensus 1 Ki~IitDS~~dl------------~~~~~~---~~-~i~---vvPl~i~~~-~-~~y~D~~~i~~~efy~~l~~~~~~p~ 59 (280)
T PF02645_consen 1 KIAIITDSTSDL------------PPELAE---EY-GIY---VVPLNIIID-G-KEYRDGVDISPEEFYEKLRESGEIPK 59 (280)
T ss_dssp -EEEEEEGGG---------------HHHHH---HT-TEE---EE--EEEET-T-EEEETTTTSCHHHHHHHHHHTTSEEE
T ss_pred CEEEEECCCCCC------------CHHHHH---hC-CeE---EEeEEEecC-C-eEEecCCCCCHHHHHHHHHhcCCCce
Confidence 478899988633 221111 11 677 899888886 2 44433 3555433 1223
Q ss_pred CChhhHHHHHHHHHHHHHHHhCccccc----ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHH-H
Q 007156 305 AIGQEYAELLHEFMTAVKQNYGERILI----QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEI-S 379 (615)
Q Consensus 305 i~g~ey~~~vdeFv~Av~~~~gp~vli----QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~-~ 379 (615)
-+.+...+|.+-|-+.+.+-| ..+++ .|- .|-+++.+...+.+.+.+|-++=..+++.|.+-++..+. .
T Consensus 60 TS~ps~~~~~~~f~~~~~~gy-d~ii~i~iSs~L-----Sgty~~a~~aa~~~~~~~i~ViDS~~~s~g~g~lv~~a~~l 133 (280)
T PF02645_consen 60 TSQPSPGEFEEAFEKLLEEGY-DEIIVITISSGL-----SGTYNSARLAAKMLPDIKIHVIDSKSVSAGQGLLVLEAAKL 133 (280)
T ss_dssp EE---HHHHHHHHHHHHHTTT-SEEEEEES-TTT------THHHHHHHHHHHHTTTEEEEEE-SS-HHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHCCC-CeEEEEeCCcch-----hhHHHHHHHHHhhcCcCEEEEEeCCCcchhhhHHHHHHHHH
Confidence 345555666655555466666 55554 221 222222222222227888999999999989888886653 2
Q ss_pred HhcCCChhhh
Q 007156 380 KQTNMPLEET 389 (615)
Q Consensus 380 ~~~Gls~eeA 389 (615)
.+.|.|.+|.
T Consensus 134 ~~~G~s~~ei 143 (280)
T PF02645_consen 134 IEQGKSFEEI 143 (280)
T ss_dssp HHTT--HHHH
T ss_pred HHcCCCHHHH
Confidence 3469998883
No 293
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=60.20 E-value=8.4 Score=42.26 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999642 11 1367788775
No 294
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=60.12 E-value=12 Score=40.68 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
.||||+|+|.||+..|..|.+. |- .-+|.++|++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988542 21 1379999987543
No 295
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=59.93 E-value=13 Score=37.31 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|+++|+||+|+|..|..-++.|+.+ | .+|.++|.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999888764 4 478888874
No 296
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=59.87 E-value=14 Score=37.52 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999999976 35 48999999833
No 297
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=59.72 E-value=23 Score=37.69 Aligned_cols=103 Identities=16% Similarity=0.167 Sum_probs=55.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc---ccCCCCCHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH---EHEPVKELVDAV 431 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~---~~~~~~~L~e~V 431 (615)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. .. ....+...+.+ +.....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~---~~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE---RAEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH---HHHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh---HHHHHHHhhccccccceeccchhhhc
Confidence 36999999999988887776654 233 789998874 22 23334433333 112246899999
Q ss_pred hccCCcEEEEccCCCC---CCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHHH
Q 007156 432 NAIKPTILIGTSGQGR---TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAEE 482 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g---~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctped 482 (615)
+. .|+++-++.... +|+.++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 999998765432 67777776 344566665322 245776653
No 298
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=59.65 E-value=9.8 Score=35.90 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=28.1
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 359 LFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 359 v~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
.|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998863 1123568999999655
No 299
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=59.31 E-value=30 Score=35.89 Aligned_cols=110 Identities=19% Similarity=0.318 Sum_probs=67.2
Q ss_pred CCCCCceeeeeecCCCCcccccc------Cccccccc----ccCCChhhHHHHHHHHHHHHHHHhCcccccccchHHHHH
Q 007156 271 GIRPSACLPVTIDVGTNNEKLLD------DEFYIGLR----QKRAIGQEYAELLHEFMTAVKQNYGERILIQGTASVVLA 340 (615)
Q Consensus 271 GI~P~~~LPI~LDvGTnne~LL~------Dp~YlGlr----~~Ri~g~ey~~~vdeFv~Av~~~~gp~vliQGTAaVvLA 340 (615)
||+ .+|+.|.+| +++.++ |.||-=++ .+.-+.+...+|.+-| +.+.+.+ .++++ =|=+-.|.
T Consensus 20 ~I~---vvPl~I~~~--~~~y~D~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~-~~l~~~~-~~vi~-i~iSs~lS 91 (275)
T TIGR00762 20 GIT---VVPLTVIID--GKTYRDGVDITPEEFYEKLKESKELPKTSQPSPGEFLELY-EKLLEEG-DEVLS-IHLSSGLS 91 (275)
T ss_pred CCE---EEEEEEEEC--CEEeecCCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHH-HHHHhCC-CeEEE-EEcCCchh
Confidence 788 999999886 344433 34443222 2344555556665555 3344455 45554 11111244
Q ss_pred HHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHH--HHHhcCCChhhh
Q 007156 341 GLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALE--ISKQTNMPLEET 389 (615)
Q Consensus 341 gll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~--~~~~~Gls~eeA 389 (615)
|-++.++...+.+.+.+|-++=..+++.|.+.++..+ |.+ .|.+.+|.
T Consensus 92 gty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~v~~a~~~~~-~G~s~~eI 141 (275)
T TIGR00762 92 GTYQSARQAAEMVDEAKVTVIDSKSASMGLGLLVLEAAKLAE-EGKSLEEI 141 (275)
T ss_pred HHHHHHHHHHhhCCCCCEEEECChHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 5555555555556667899999999999999888665 343 69999885
No 300
>PRK12828 short chain dehydrogenase; Provisional
Probab=59.22 E-value=22 Score=34.12 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 467789999997 5555556555543 352 58888884
No 301
>PRK06847 hypothetical protein; Provisional
Probab=58.71 E-value=13 Score=39.12 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~ 376 (615)
..+|+|+|||.||+..|..|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4689999999999999998864
No 302
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=58.69 E-value=34 Score=39.06 Aligned_cols=80 Identities=14% Similarity=0.289 Sum_probs=47.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc---cCCCCC
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE---HEPVKE 426 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~---~~~~~~ 426 (615)
...|...|++|+|-++-..|+++.|... .|+. +..++.. .....+.+.+.-+.+..+ .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 3678889999999999999999999765 4873 2233321 110000011111111110 112235
Q ss_pred HHHHHhccCCcEEEEcc
Q 007156 427 LVDAVNAIKPTILIGTS 443 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S 443 (615)
+.+.|+..+||++||.|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 77888999999999976
No 303
>PRK06184 hypothetical protein; Provisional
Probab=58.68 E-value=12 Score=41.56 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=27.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45789999999999999988865 365 46777765
No 304
>PRK05866 short chain dehydrogenase; Provisional
Probab=58.63 E-value=39 Score=34.86 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 350 GGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 350 g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+..+++.++||.|| |-.|..+|+.+ .+ .| .+++++|++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~L----a~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQF----AR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHH----HH-CC-------CEEEEEECC
Confidence 45577789999998 33444444444 33 35 368888875
No 305
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.09 E-value=42 Score=37.58 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=61.7
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhc
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 433 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 433 (615)
.++||+|+|.|-.|.++|++|.. | .++++.|.+-. .+ ..+.+.+..+... . .+ .+.+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~------g-------~~v~v~D~~~~---~~-~~~~~~~~~~~~~--~-~~-~~~~~- 62 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN------K-------YDVIVYDDLKA---NR-DIFEELYSKNAIA--A-LS-DSRWQ- 62 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC------C-------CEEEEECCCCC---ch-HHHHhhhcCceec--c-CC-hhHhh-
Confidence 46799999999999999999851 4 36888885421 11 1111111111111 0 01 12233
Q ss_pred cCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccC-CcEEEeeCCCCCCcccCCeee
Q 007156 434 IKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQ-GRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 434 vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~-GraifASGSPF~pV~~~G~~~ 509 (615)
++|.+|=.++.+ .=++++.++.. ...||+ +. .|-++.+.+ .+.|--||| ||||-
T Consensus 63 -~~d~vV~SPgI~-~~~p~~~~a~~--~gi~v~-------~e----~el~~~~~~~~~~IaVTGT-------nGKTT 117 (454)
T PRK01368 63 -NLDKIVLSPGIP-LTHEIVKIAKN--FNIPIT-------SD----IDLLFEKSKNLKFIAITGT-------NGKST 117 (454)
T ss_pred -CCCEEEECCCCC-CCCHHHHHHHH--CCCcee-------cH----HHHHHHHhcCCCEEEEECC-------CcHHH
Confidence 378777555655 23555555443 356665 11 333555543 367777997 77754
No 306
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=58.02 E-value=33 Score=37.02 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=26.2
Q ss_pred CHHHHHhccCCcE-EEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 426 ELVDAVNAIKPTI-LIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 426 ~L~e~V~~vkPtv-LIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
.|.+.... .|+ ++|.|-..+ |.--++|+|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45566665 887 777665332 5556899999 6899997
No 307
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=57.74 E-value=13 Score=38.39 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.+..|+|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35789999999999999887754 353 688888764
No 308
>PRK07233 hypothetical protein; Provisional
Probab=57.71 E-value=11 Score=39.98 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||+|+|||-||+..|..|.+. | .++.++++.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 5 368888776
No 309
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=57.66 E-value=49 Score=33.22 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=44.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc----chhhc-cccCCCCCHHHH
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF----KKPWA-HEHEPVKELVDA 430 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~----k~~fA-~~~~~~~~L~e~ 430 (615)
||+|.|| |..|-.+++.|+.. |- .-+++.+|+... ..+.+.+... ...+. -+..+..++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888997 78888888877542 31 136777875211 0111111111 01111 122233467888
Q ss_pred HhccCCcEEEEccCCC
Q 007156 431 VNAIKPTILIGTSGQG 446 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~ 446 (615)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 310
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=57.55 E-value=64 Score=34.91 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=60.5
Q ss_pred HhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhh-ccccCCCCC
Q 007156 348 FLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-AHEHEPVKE 426 (615)
Q Consensus 348 ~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~f-A~~~~~~~~ 426 (615)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. ++..+.+ ++ .-+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----ecc
Confidence 3456788999999999999999999996 43 54 5666666532 1111111 21 123
Q ss_pred HHHHHhccCCcEEEEccC----CCCCCCHHHHHHHHccCCCcEEEe
Q 007156 427 LVDAVNAIKPTILIGTSG----QGRTFTKEVVEAMASLNEKPIIFS 468 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~----~~g~Fteevv~~Ma~~~erPIIFa 468 (615)
|.|.++. .|+++-..- ..++|+++.++.|. +.-+|.=
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVN 234 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVN 234 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEE
Confidence 8898887 898885422 12689999999995 3445443
No 311
>PRK07236 hypothetical protein; Provisional
Probab=57.46 E-value=15 Score=39.21 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
....+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456789999999999999999876
No 312
>PRK14852 hypothetical protein; Provisional
Probab=57.41 E-value=13 Score=45.75 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|+..||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 578999999999999999999998764 76 799999987
No 313
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=57.35 E-value=2e+02 Score=33.31 Aligned_cols=131 Identities=24% Similarity=0.283 Sum_probs=82.1
Q ss_pred chHHHHHHHHHHHHHhC--CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcc
Q 007156 334 TASVVLAGLISAMKFLG--GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQ 411 (615)
Q Consensus 334 TAaVvLAgll~Alr~~g--~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~ 411 (615)
||-=|..+.=+=+.-.+ +++++.||++-|-|--|.-.|..|.+. | -+-|-+.|++|.|.... .++
T Consensus 228 TG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid 294 (514)
T KOG2250|consen 228 TGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GID 294 (514)
T ss_pred cchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCC
Confidence 44444444433344444 789999999999999998888888764 4 26677889999988764 343
Q ss_pred ccc-hhhccccCCCCCHH----------------HHHhccCCcEEEEccCCCCCCCHHHHHHH-HccCCCcEEEecCC-C
Q 007156 412 HFK-KPWAHEHEPVKELV----------------DAVNAIKPTILIGTSGQGRTFTKEVVEAM-ASLNEKPIIFSLSN-P 472 (615)
Q Consensus 412 ~~k-~~fA~~~~~~~~L~----------------e~V~~vkPtvLIG~S~~~g~Fteevv~~M-a~~~erPIIFaLSN-P 472 (615)
..+ ..+++....++++. --+. +.|+|+=+.++ +..|.|=.+.. +++| |+|.==|| |
T Consensus 295 ~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~p 369 (514)
T KOG2250|consen 295 IEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMP 369 (514)
T ss_pred HHHHHHHHHhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCC
Confidence 322 23333222222111 1122 58999999998 67776665554 5555 89998899 5
Q ss_pred CCcCCCCHHHHhc
Q 007156 473 TSQSECTAEEAYT 485 (615)
Q Consensus 473 ts~aEctpedA~~ 485 (615)
|+ || ++++++
T Consensus 370 tT-pe--A~~vle 379 (514)
T KOG2250|consen 370 TT-PE--ADEVLE 379 (514)
T ss_pred CC-hh--HHHHHH
Confidence 52 33 235554
No 314
>PRK08163 salicylate hydroxylase; Provisional
Probab=57.11 E-value=13 Score=39.33 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.1
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~ 376 (615)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988764
No 315
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=56.80 E-value=6.7 Score=42.12 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=51.7
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch-------hhcc-ccCCCCCHHH
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-------PWAH-EHEPVKELVD 429 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~-------~fA~-~~~~~~~L~e 429 (615)
|+|+|+|..|-.+++.|.+. .. ..++.+.|++ .++ +..... .+.. +..+..+|.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~------~~~v~va~r~----~~~---~~~~~~~~~~~~~~~~~~d~~~~~~l~~ 63 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GP------FEEVTVADRN----PEK---AERLAEKLLGDRVEAVQVDVNDPESLAE 63 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TC------E-EEEEEESS----HHH---HHHHHT--TTTTEEEEE--TTTHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcC----CC------CCcEEEEECC----HHH---HHHHHhhccccceeEEEEecCCHHHHHH
Confidence 79999999999999988753 11 1288998885 111 211111 1111 1222235888
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 430 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
.+++ .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 64 ~~~~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 64 LLRG--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp HHTT--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred HHhc--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 8887 69999988865 788888875542 344444
No 316
>PRK05993 short chain dehydrogenase; Provisional
Probab=56.51 E-value=33 Score=34.72 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=20.9
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.++||.|| |..|..+|+.+.+ .| -++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G-------~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DG-------WRVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CC-------CEEEEEECC
Confidence 57899998 5555555555543 35 368888774
No 317
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=56.43 E-value=11 Score=40.24 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.+|||+|+|.||+..|+.|... + ..-+|.+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988542 1 124788887754
No 318
>PLN02240 UDP-glucose 4-epimerase
Probab=56.43 E-value=31 Score=35.83 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=59.5
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccc------cchhhcc-ccCC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQH------FKKPWAH-EHEP 423 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~------~k~~fA~-~~~~ 423 (615)
.++..||+|.|| |--|..+++.|++. | .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 78888888877642 4 3688888642100000000000 0011111 1222
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCC----------------CCHHHHHHHHccCCCcEEEecC
Q 007156 424 VKELVDAVNAIKPTILIGTSGQGRT----------------FTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 424 ~~~L~e~V~~vkPtvLIG~S~~~g~----------------Fteevv~~Ma~~~erPIIFaLS 470 (615)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2357777777789999987764321 1235667776655567887533
No 319
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=56.37 E-value=13 Score=39.77 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=25.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD-----SGL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEecC
Confidence 4689999999999999998865 364 45666654
No 320
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=56.03 E-value=44 Score=36.85 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=62.2
Q ss_pred eEEEeCcChHHHH-HHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 357 RFLFLGAGEAGTG-IAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GAGsAG~G-IA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
+|.|+|.|-+|++ +|++|.+ .|. ++...|.+--- ..+.|......+- .. .+. +.++ +
T Consensus 1 ~~~~iGiggsGm~~la~~L~~-----~G~-------~v~~~D~~~~~---~~~~l~~~gi~~~---~g-~~~-~~~~--~ 58 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN-----RGY-------QVSGSDIAENA---TTKRLEALGIPIY---IG-HSA-ENLD--D 58 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH-----CCC-------eEEEECCCcch---HHHHHHHCcCEEe---CC-CCH-HHCC--C
Confidence 5899999999998 9998875 363 57888864211 1111221111111 01 111 2343 3
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc-CCcEEEeeCCCCCCcccCCeee
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT-~GraifASGSPF~pV~~~G~~~ 509 (615)
+|.+|=.++.+ --++++.++.. ...||+ +.+|. ++++. +.+.|--||| ||||-
T Consensus 59 ~d~vV~spgi~-~~~p~~~~a~~--~~i~v~-------~~~el----~~~~~~~~~~IaITGT-------nGKTT 112 (448)
T TIGR01082 59 ADVVVVSAAIK-DDNPEIVEAKE--RGIPVI-------RRAEM----LAELMRFRHSIAVAGT-------HGKTT 112 (448)
T ss_pred CCEEEECCCCC-CCCHHHHHHHH--cCCceE-------eHHHH----HHHHHhcCcEEEEECC-------CChHH
Confidence 88888666665 35677777664 356775 33443 22332 3467778887 77654
No 321
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=55.93 E-value=16 Score=40.87 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456899999999999999988865
No 322
>PRK12829 short chain dehydrogenase; Provisional
Probab=55.58 E-value=50 Score=32.47 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+++.+++|.||. ..|..+++++ .+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L----~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAF----AE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHH----HH-CCC-------EEEEEeCC
Confidence 3788999999984 3444444444 33 352 58888864
No 323
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=55.30 E-value=43 Score=35.97 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
|++.||.|+|+|.-|-++|..|..
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999999875
No 324
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=55.25 E-value=42 Score=32.92 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=42.0
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhh---------c-cc
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW---------A-HE 420 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~f---------A-~~ 420 (615)
.++..+++|.|| |..|..+++.|++ .|. +++++++.- . .+....+.+ . -+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLNQ----D---GANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCCh----H---HHHHHHHHHHhcCceEEEEECC
Confidence 356678999998 5566666666543 352 578877742 1 111111111 0 11
Q ss_pred cCCCCCHHHHHhcc-----CCcEEEEccCCC
Q 007156 421 HEPVKELVDAVNAI-----KPTILIGTSGQG 446 (615)
Q Consensus 421 ~~~~~~L~e~V~~v-----kPtvLIG~S~~~ 446 (615)
..+..++.++++.+ ++|++|-+.+..
T Consensus 65 l~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 65 VTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 12223566666654 489999988753
No 325
>PRK09126 hypothetical protein; Provisional
Probab=55.08 E-value=15 Score=38.94 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.2
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~ 376 (615)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999988865
No 326
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=55.01 E-value=23 Score=40.31 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999988754 353 58888863
No 327
>PRK06475 salicylate hydroxylase; Provisional
Probab=54.85 E-value=14 Score=39.73 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 899999999999999987754
No 328
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=54.83 E-value=17 Score=40.16 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+....+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 34567899999999999999998864 25 368888874
No 329
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=54.38 E-value=15 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=24.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
|+|+|||.||+.+|..+.+ .| .++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g-------~~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PG-------LRVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccCC
Confidence 8999999999999977653 35 3788999764
No 330
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=54.32 E-value=41 Score=35.35 Aligned_cols=103 Identities=11% Similarity=0.110 Sum_probs=54.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc--chhhc-cccCCCCCHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWA-HEHEPVKELVDA 430 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~--k~~fA-~~~~~~~~L~e~ 430 (615)
...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-. ...+- ....-..+. +.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 69 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSA-ED 69 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcch-hh
Confidence 456899999999999999888653 4 35556655321 11111111000 00000 000001122 22
Q ss_pred HhccCCcEEEEccCCCCCCCHHHHHHHHcc-CCCcEEEecCCCCC
Q 007156 431 VNAIKPTILIGTSGQGRTFTKEVVEAMASL-NEKPIIFSLSNPTS 474 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~-~erPIIFaLSNPts 474 (615)
+. .+|++| ++... .-++++++.++.. .+..+|+.|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 367776 44433 3478888888653 35667888988764
No 331
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=54.27 E-value=12 Score=39.52 Aligned_cols=32 Identities=38% Similarity=0.838 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..|-|+|||-.|-|||+..+.. |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4678999999999999988764 65 79999985
No 332
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.07 E-value=31 Score=39.19 Aligned_cols=76 Identities=20% Similarity=0.412 Sum_probs=44.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCC--ccCccccchhhccc---cCCCCC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--LESLQHFKKPWAHE---HEPVKE 426 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R--~~~L~~~k~~fA~~---~~~~~~ 426 (615)
.|...|++|+|-..-..|+++.|... .|+.. ++ + -+..+ .+.+.+..+.+..+ .++...
T Consensus 292 ~l~Gkrv~I~gd~~~a~~l~~~L~~E----lG~~v------v~-~-----gt~~~~~~~~~~~~~~~~~~~~~i~dD~~e 355 (511)
T TIGR01278 292 SLTGKRAFVFGDATHAVGMTKILARE----LGIHI------VG-A-----GTYCKYDADWVREQVAGYVDEVLITDDFQE 355 (511)
T ss_pred HhcCCeEEEEcCcHHHHHHHHHHHHh----CCCEE------Ee-c-----CCchhhhHHHHHHHHHhcCCCeEEeCCHHH
Confidence 37788999999999999999999754 37632 11 1 11111 01111111111111 111235
Q ss_pred HHHHHhccCCcEEEEcc
Q 007156 427 LVDAVNAIKPTILIGTS 443 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S 443 (615)
+++.|+..+||.+||.|
T Consensus 356 i~~~i~~~~pdliiG~~ 372 (511)
T TIGR01278 356 VADAIAALEPELVLGTQ 372 (511)
T ss_pred HHHHHHhcCCCEEEECh
Confidence 77888999999999966
No 333
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=53.94 E-value=16 Score=39.41 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999999764 54 45666665443
No 334
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=53.70 E-value=69 Score=34.99 Aligned_cols=34 Identities=15% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLG-AGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~G-AGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
...||.|+| +|.-|..+|..+..+ |. .++++|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 347899999 999999999998753 53 58888874
No 335
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=53.67 E-value=15 Score=41.18 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.2
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+.|++-+|+++|+|..|.-+++-|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357889999999999999999999875 76 799999986
No 336
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=53.30 E-value=51 Score=33.87 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=28.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++-||.|+|+|.-|..++.-|... |.- ..++++.+|++
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~ 39 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPS 39 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCC
Confidence 457899999999999999998753 321 12468888863
No 337
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=53.29 E-value=20 Score=29.72 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=23.9
Q ss_pred EeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 360 FLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 360 ~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
|+|||.+|+..|-.|.+. | .+|.++|++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 789999999999988652 3 589999987443
No 338
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=53.24 E-value=38 Score=37.74 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCccc--ccccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcC
Q 007156 314 LHEFMTAVKQNYGERI--LIQGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRK 391 (615)
Q Consensus 314 vdeFv~Av~~~~gp~v--liQGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk 391 (615)
.|+|++.+.+.+|.++ .++-.=... +.++.-....|...||.++|-+.-..++++.+.+ .|+.. .
T Consensus 272 t~~~l~~l~~~~g~~~~~~~~~~r~~~----~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~ 338 (432)
T TIGR01285 272 VDAFLHVLMKISGRAVPERFERQRRQL----QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----V 338 (432)
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHH----HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----E
Confidence 3577777888887543 222222222 3444444456778999999988888999999754 47632 1
Q ss_pred eEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccC
Q 007156 392 KIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSG 444 (615)
Q Consensus 392 ~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~ 444 (615)
.+..-+..... ..+... .-+. .+...|++.++..+||++||-|-
T Consensus 339 ~~~~~~~~~~~-----~~~~~~-~~~~---~D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 339 AAVTTTGSPLL-----QKLPVE-TVVI---GDLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred EEEeCCCCHHH-----HhCCcC-cEEe---CCHHHHHHHHhhcCCCEEEECcc
Confidence 12211111000 001110 0111 12235788888889999998664
No 339
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=53.02 E-value=13 Score=39.53 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=49.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCC----CCC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP----VKE 426 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~----~~~ 426 (615)
++|..-+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|+ ..|-...+- ...
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 578899999999999999999999775 75 79999998732 221 132 222222111 124
Q ss_pred HHHHHhccCCcEEEE
Q 007156 427 LVDAVNAIKPTILIG 441 (615)
Q Consensus 427 L~e~V~~vkPtvLIG 441 (615)
..+-++..+|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 566677778888773
No 340
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=52.95 E-value=18 Score=37.98 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=84.4
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCC-CHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVK-ELV 428 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~-~L~ 428 (615)
|..++ +++|+||=--|.+||+.|... + +|+++|.+ +|-+.+-.+.-... .+.
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~~ 91 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFRN 91 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeeccC
Confidence 45555 899999999999999988532 2 89999974 22222221100000 111
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCee
Q 007156 429 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNV 508 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~ 508 (615)
+ . .++||++|=++|-||+ +++.++.. .|=+|=.=||. ++-.=...++.. ...
T Consensus 92 ~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~--~~~sD~~I~~~~------------------nt~ 143 (252)
T PF06690_consen 92 G-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK--GDGSDKTIYEIN------------------NTE 143 (252)
T ss_pred C-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC--ccCcchhhhhcc------------------cHH
Confidence 1 1 2379999999999996 99998765 36777778888 444333333321 111
Q ss_pred eCcC--CCccccccchh--hHHHHHcCCcccCHHHHHHHHHHHH
Q 007156 509 FVPG--QANNAYIFPGL--GLGLIMSGAIRVHDDMLLAAAEALA 548 (615)
Q Consensus 509 ~~p~--Q~NN~yiFPGi--glG~l~s~a~~Itd~M~laAA~aLA 548 (615)
-.+. -+.+..+.=-. |+..=.||-=.+|=+.+..|+..+=
T Consensus 144 erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 144 ERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 1111 12233333333 4555567777778777776666553
No 341
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=52.87 E-value=19 Score=40.13 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=28.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-.+.+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~-----~G-------~~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR-----AG-------HKVTVFERA 175 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-----CC-------CcEEEEecC
Confidence 356799999999999999988864 25 368899875
No 342
>PRK06841 short chain dehydrogenase; Provisional
Probab=52.78 E-value=34 Score=33.62 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=24.6
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++.+.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 477889999997 5555556665543 352 57888775
No 343
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=52.74 E-value=12 Score=40.95 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=26.5
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..+..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 3556799999999999988776621 1 2368888874
No 344
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=52.62 E-value=30 Score=35.89 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 473 (615)
+-|++||.|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 118 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 118 ERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5799999999886 899998875 344457766666676
No 345
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=52.47 E-value=20 Score=37.81 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=26.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..+|+|+|||.||+..|-+|...- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999998886520 0154 57777773
No 346
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.42 E-value=18 Score=42.09 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
...||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 56899999999999999988875 353 58888874
No 347
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=52.37 E-value=18 Score=39.40 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=27.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
+-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 3469999999999999988865 25 5799999864
No 348
>PLN02268 probable polyamine oxidase
Probab=52.22 E-value=6.9 Score=42.36 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~ 376 (615)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999976
No 349
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=51.93 E-value=18 Score=35.90 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=24.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 48999999999999987753 354 677888764
No 350
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=51.92 E-value=21 Score=35.35 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc-c---hhhccccCCCCC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-K---KPWAHEHEPVKE 426 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~-k---~~fA~~~~~~~~ 426 (615)
.+.+.+++|.|| |.-|..||+.+++ .| -+++++|++. .+.+.+.+. . ..+.-+..+..+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G-------~~v~~~~r~~----~~~~~~~~~~~~~~~~~~~D~~~~~~ 66 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EG-------ARVVIADIKP----ARARLAALEIGPAAIAVSLDVTRQDS 66 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cC-------CEEEEEcCCH----HHHHHHHHHhCCceEEEEccCCCHHH
Confidence 467889999997 4445555555543 35 3688887642 110111100 0 011112222234
Q ss_pred HHHHHhcc-----CCcEEEEccCCC
Q 007156 427 LVDAVNAI-----KPTILIGTSGQG 446 (615)
Q Consensus 427 L~e~V~~v-----kPtvLIG~S~~~ 446 (615)
+.++++.+ ++|+||=+.+..
T Consensus 67 ~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 67 IDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 56666654 689999776643
No 351
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=51.82 E-value=53 Score=35.31 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=57.5
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc--chhhcc-ccCCCCCHHH
Q 007156 354 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF--KKPWAH-EHEPVKELVD 429 (615)
Q Consensus 354 ~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~--k~~fA~-~~~~~~~L~e 429 (615)
+++||+|.|+ |-.|..+++.|.+ .| -+++.+|+..- ..+... ...+-. +..+...+..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999888888865 25 36888887431 001110 111111 1112223445
Q ss_pred HHhccCCcEEEEccCCCC--C---------------CCHHHHHHHHccCCCcEEEecC
Q 007156 430 AVNAIKPTILIGTSGQGR--T---------------FTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~g--~---------------Fteevv~~Ma~~~erPIIFaLS 470 (615)
+++ ++|++|=+.+..+ - .+..+++++.++.-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 5899998875431 1 2355777777766678998644
No 352
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.63 E-value=70 Score=35.26 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=64.4
Q ss_pred CCC-ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHH
Q 007156 353 LAD-QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAV 431 (615)
Q Consensus 353 L~d-~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V 431 (615)
++. +||+|+|.|-.|++.+++|... .| .-++...|.+=. ....+.|.. ...+...+ .+. +.+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~----~~------~~~v~~~D~~~~--~~~~~~l~~-g~~~~~g~---~~~-~~~ 66 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKY----QP------QLTVKVIDTRET--PPGQEQLPE-DVELHSGG---WNL-EWL 66 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhc----CC------CCeEEEEeCCCC--chhHHHhhc-CCEEEeCC---CCh-HHh
Confidence 344 6899999999999999998753 22 125778886421 000011211 11111110 112 234
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~ 509 (615)
. ++|.+|=.++.+ --.+++.++.. ..-||+ +.+|. ++.+.+.+.|--||| ||||-
T Consensus 67 ~--~~d~vV~SpgI~-~~~p~~~~a~~--~gi~i~-------~~~el----~~~~~~~~~I~VTGT-------nGKTT 121 (438)
T PRK04663 67 L--EADLVVTNPGIA-LATPEIQQVLA--AGIPVV-------GDIEL----FAWAVDKPVIAITGS-------NGKST 121 (438)
T ss_pred c--cCCEEEECCCCC-CCCHHHHHHHH--CCCcEE-------EHHHH----HHhhcCCCEEEEeCC-------CCHHH
Confidence 3 378777555655 34667666654 346774 33443 333445678888998 78754
No 353
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=51.61 E-value=18 Score=39.68 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=34.1
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
.+|++|=||++|||..|--++++|+.. |+ ++|-+||-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999874 64 78999987644
No 354
>PRK07045 putative monooxygenase; Reviewed
Probab=51.48 E-value=18 Score=38.41 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 355
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=51.42 E-value=59 Score=35.59 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=25.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||.|+|+|..|..+|..|... | .+++++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 789999999999999998753 5 358888874
No 356
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=51.40 E-value=17 Score=39.84 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999999887653 5 5788999864
No 357
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=51.38 E-value=53 Score=36.00 Aligned_cols=51 Identities=24% Similarity=0.245 Sum_probs=37.3
Q ss_pred CHHHHHhccCCcEEEEccCCCC-----CCCHHHHHHHHccCCCcEEEecCCCC-CcCCCCHH
Q 007156 426 ELVDAVNAIKPTILIGTSGQGR-----TFTKEVVEAMASLNEKPIIFSLSNPT-SQSECTAE 481 (615)
Q Consensus 426 ~L~e~V~~vkPtvLIG~S~~~g-----~Fteevv~~Ma~~~erPIIFaLSNPt-s~aEctpe 481 (615)
-+.|-+++ -|++|=+.-.|| +.|+|+|++|. .-.+|.=|+--+ -++|+|-.
T Consensus 237 ~~a~~~~~--~DivITTAlIPGrpAP~Lvt~~mv~sMk---pGSViVDlAa~~GGNce~t~p 293 (356)
T COG3288 237 LVAEQAKE--VDIVITTALIPGRPAPKLVTAEMVASMK---PGSVIVDLAAETGGNCELTEP 293 (356)
T ss_pred HHHHHhcC--CCEEEEecccCCCCCchhhHHHHHHhcC---CCcEEEEehhhcCCCcccccC
Confidence 35566665 899998776665 79999999996 677888887644 35666643
No 358
>PRK06138 short chain dehydrogenase; Provisional
Probab=51.36 E-value=38 Score=33.04 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=40.4
Q ss_pred CCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchh--------hcc-cc
Q 007156 352 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKP--------WAH-EH 421 (615)
Q Consensus 352 ~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~--------fA~-~~ 421 (615)
.|++.+++|.||. .-|..+|+.+ .+ .| -++++++++. + .+.+.... +.. +.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l----~~-~G-------~~v~~~~r~~----~---~~~~~~~~~~~~~~~~~~~~D~ 62 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLF----AR-EG-------ARVVVADRDA----E---AAERVAAAIAAGGRAFARQGDV 62 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHH----HH-CC-------CeEEEecCCH----H---HHHHHHHHHhcCCeEEEEEcCC
Confidence 3677899999983 4444444444 33 25 3688887641 1 11111111 111 12
Q ss_pred CCCCCHHHHHhcc-----CCcEEEEccCCC
Q 007156 422 EPVKELVDAVNAI-----KPTILIGTSGQG 446 (615)
Q Consensus 422 ~~~~~L~e~V~~v-----kPtvLIG~S~~~ 446 (615)
.+..++.++++.+ ++|++|=+.+..
T Consensus 63 ~~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 63 GSAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 2223566666554 789999877653
No 359
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=51.32 E-value=17 Score=38.29 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=25.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999977754 353 57778765
No 360
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=51.27 E-value=17 Score=40.49 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
-.|+|+|||.||...|..|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 468999999999999988764
No 361
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=51.20 E-value=50 Score=32.57 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 5566666666643 353 57777764
No 362
>PRK06753 hypothetical protein; Provisional
Probab=51.19 E-value=18 Score=37.98 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.6
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~ 376 (615)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888865
No 363
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=51.17 E-value=20 Score=37.59 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=27.4
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 35699999999999999888652 5 4788999764
No 364
>PRK08219 short chain dehydrogenase; Provisional
Probab=51.00 E-value=68 Score=30.68 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=39.0
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhh-----c-cccCCCCCHH
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPW-----A-HEHEPVKELV 428 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~f-----A-~~~~~~~~L~ 428 (615)
.+++|.|| |..|..+++.|++ . .+++++|++. +.++...+.. - -+..+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~------------~-~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAP------------T-HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHh------------h-CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 57899997 5555555555542 1 3588888751 1121111111 1 1112224566
Q ss_pred HHHhcc-CCcEEEEccCCC
Q 007156 429 DAVNAI-KPTILIGTSGQG 446 (615)
Q Consensus 429 e~V~~v-kPtvLIG~S~~~ 446 (615)
++++.+ +.|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999888764
No 365
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=50.88 E-value=11 Score=45.09 Aligned_cols=92 Identities=25% Similarity=0.280 Sum_probs=56.2
Q ss_pred hhcCCCCCceeee---------------eecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCccc-cc
Q 007156 268 ALGGIRPSACLPV---------------TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERI-LI 331 (615)
Q Consensus 268 a~gGI~P~~~LPI---------------~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~v-li 331 (615)
-+|.+-|...+|| ++|+||||++ +||||++|+.+| |.. .|
T Consensus 76 GlGd~G~~a~~pv~egK~~l~~~~~gid~~~i~~~~~d-----------------------~de~v~~v~~~~-p~~g~i 131 (752)
T PRK07232 76 GLGNIGALASKPVMEGKGVLFKKFAGIDVFDIEVDEED-----------------------PDKFIEAVAALE-PTFGGI 131 (752)
T ss_pred cccccccccCccHHHHHHHHHHhhcCCCccccccCCCC-----------------------HHHHHHHHHHhC-CCccEE
Confidence 3678888889999 6899999873 789999999999 665 55
Q ss_pred ------ccchHHHHHHHHHHHHHhCCC-CC-CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 007156 332 ------QGTASVVLAGLISAMKFLGGS-LA-DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 396 (615)
Q Consensus 332 ------QGTAaVvLAgll~Alr~~g~~-L~-d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lv 396 (615)
.-.+--++.-+-..+ +.+ +. ||. |+|.+..|-+|-. +.- .|-+.++. +|.++
T Consensus 132 ~~ED~~~p~~f~i~~~~~~~~---~ip~f~DD~~------GTa~v~lA~l~na-~~~-~~~~~~~~--~iv~~ 191 (752)
T PRK07232 132 NLEDIKAPECFYIEEKLRERM---DIPVFHDDQH------GTAIISAAALLNA-LEL-VGKKIEDV--KIVVS 191 (752)
T ss_pred eeeecCCchHHHHHHHHHHhc---CCCeeccccc------hHHHHHHHHHHHH-HHH-hCCChhhc--EEEEE
Confidence 333333333322211 122 22 232 6677777777744 322 36555553 34443
No 366
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=50.85 E-value=29 Score=30.45 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=52.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKP 436 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkP 436 (615)
||.|+|+|..|.....-+.... .+ .+=..++|++. +....+.+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~---~~------~~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSS---PD------FEVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT---TT------EEEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhcC---CC------cEEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 7999999999776655554320 11 12345666641 112222222321 134789999998889
Q ss_pred cEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 437 TILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 437 tvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 55544 456666666554333 5554
No 367
>PLN02676 polyamine oxidase
Probab=50.74 E-value=40 Score=38.05 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.1
Q ss_pred CCceEEEeCcChHHHHHHHHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
...+|+|+|||.+|++.|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35679999999999999999875
No 368
>PRK07589 ornithine cyclodeaminase; Validated
Probab=50.71 E-value=1.7e+02 Score=31.95 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=66.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc---CCCCCHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH---EPVKELVDA 430 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~---~~~~~L~e~ 430 (615)
.-.++.|+|+|.-+..-++.++.. .. -++|+++|+. .. ..+.+.+.+.+.. ....+++|+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~v----r~------i~~V~v~~r~----~~---~a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKAL----LG------IEEIRLYDID----PA---ATAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHh----CC------ceEEEEEeCC----HH---HHHHHHHHHHhcCCcEEEeCCHHHH
Confidence 347899999999887777666553 12 3788888773 21 2233333332211 113689999
Q ss_pred HhccCCcEEEEccCCC---CCCCHHHHHHHHccCCCcEEEec-CCCCCcCCCCHHHH
Q 007156 431 VNAIKPTILIGTSGQG---RTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEA 483 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~---g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEctpedA 483 (615)
++. .||++-++... -+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 997 99999876432 3688888852 2235554 44445789998753
No 369
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=50.58 E-value=20 Score=37.69 Aligned_cols=33 Identities=30% Similarity=0.329 Sum_probs=26.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988864 25 36888888654
No 370
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.41 E-value=88 Score=29.98 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.0
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMA 458 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma 458 (615)
+-|++|++|..|. |+++++.+.
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHH
Confidence 4799999998774 999999985
No 371
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=50.36 E-value=66 Score=33.26 Aligned_cols=86 Identities=12% Similarity=0.283 Sum_probs=51.6
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
||+|.|| |--|-.+++.|.+ .| +++.+|+..-. +.-+..+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999888877753 12 36666753110 0011122235777888888
Q ss_pred CcEEEEccCCCCCC----------------CHHHHHHHHccCCCcEEEecC
Q 007156 436 PTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 436 PtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFaLS 470 (615)
||++|=+.+..+.- |..+++++.+.. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776654221 233555555544 46887544
No 372
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=50.26 E-value=21 Score=39.73 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=32.0
Q ss_pred CcEEEeeCCC-------CCCc-ccCCeeeCcCCCccccccchhhHHHHHcCCcc
Q 007156 489 GRAIFASGSP-------FDPF-EYGDNVFVPGQANNAYIFPGLGLGLIMSGAIR 534 (615)
Q Consensus 489 GraifASGSP-------F~pV-~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~ 534 (615)
-.+|+|||-= |+-. +++|+.+++.|=-|..-|.|==-++|=++++-
T Consensus 134 ~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 134 DFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred CEEEEeecCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccH
Confidence 3578899951 2222 34789999999999999988655555566553
No 373
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=50.25 E-value=52 Score=34.02 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
||-|+|+|..|..+|..|... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998752 53 67788875
No 374
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=50.18 E-value=99 Score=33.77 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=72.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc
Q 007156 340 AGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH 419 (615)
Q Consensus 340 Agll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~ 419 (615)
|+.++|=.+..+. --++.|+|+|.-+-. .++++.+..++ ++|++.|+. .+....+...+.+
T Consensus 117 asavAa~~LA~~d--a~~laiIGaG~qA~~----ql~a~~~v~~~------~~I~i~~r~-------~~~~e~~a~~l~~ 177 (330)
T COG2423 117 ASAVAAKYLARKD--ASTLAIIGAGAQART----QLEALKAVRDI------REIRVYSRD-------PEAAEAFAARLRK 177 (330)
T ss_pred HHHHHHHHhccCC--CcEEEEECCcHHHHH----HHHHHHhhCCc------cEEEEEcCC-------HHHHHHHHHHHHh
Confidence 4455554554442 246789999976544 44444433343 678887774 1122222222222
Q ss_pred c----cCCCCCHHHHHhccCCcEEEEccCC-CCCCCHHHHHHHHccCCCcEEEec-CCCCCcCCCCHHHHhc
Q 007156 420 E----HEPVKELVDAVNAIKPTILIGTSGQ-GRTFTKEVVEAMASLNEKPIIFSL-SNPTSQSECTAEEAYT 485 (615)
Q Consensus 420 ~----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Fteevv~~Ma~~~erPIIFaL-SNPts~aEctpedA~~ 485 (615)
. .....+++++|+. .|+++.++.. .-+|+.++|+ +.=-|-++ ||+-.+-|+.+|-..+
T Consensus 178 ~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~------~G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 178 RGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLK------PGTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred hcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcC------CCcEEEecCCCCcccccCCHHHHHh
Confidence 2 2345799999998 9999998543 3488888886 33334444 5677789999977654
No 375
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=50.10 E-value=21 Score=38.38 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=26.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 4579999999999999888865 364 57777776
No 376
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=50.07 E-value=25 Score=37.64 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|+..+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 456799999999999999888752 242 47889998643
No 377
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=49.89 E-value=19 Score=40.64 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 469999999999999988865 365 588888763
No 378
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=49.89 E-value=2.4e+02 Score=31.48 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=61.8
Q ss_pred HHHHhcc------CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCC
Q 007156 428 VDAVNAI------KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDP 501 (615)
Q Consensus 428 ~e~V~~v------kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~p 501 (615)
.|+.+++ .||++|-+.+.||.+.= +...... .+.|=|...- |....--+++.+-.++.|+.-+..|+-.-.
T Consensus 213 ~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~G-i~~~f~~-~~~v~iigVE-~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~ 289 (397)
T PRK04346 213 EEAKAQILEKEGRLPDAVVACVGGGSNAIG-IFHPFID-DESVRLIGVE-AAGKGLETGKHAATLTKGRPGVLHGAKTYL 289 (397)
T ss_pred HHHHHHHHHhhCCCCCEEEEecCccHhHHH-HHHHHhh-CCCCeEEEEe-cCCCccccccccchhhcCCeeeecccccee
Confidence 3555544 69999988776653221 1111111 2333333221 221111233445555566655555531111
Q ss_pred cccCCeeeCcCCCcccc------ccchhhHHHH---Hc---CCcccCHHHHHHHHHHHHccCCccCCCCCCccCCCCC
Q 007156 502 FEYGDNVFVPGQANNAY------IFPGLGLGLI---MS---GAIRVHDDMLLAAAEALAGQVTQENFDKGLLYPPFKN 567 (615)
Q Consensus 502 V~~~G~~~~p~Q~NN~y------iFPGiglG~l---~s---~a~~Itd~M~laAA~aLA~~v~~~~~~~g~l~P~i~~ 567 (615)
.. +..+|.-..+ -+||+|-... .+ ....|||+-.++|.+.|+.. .-|+|-++.
T Consensus 290 ~~-----~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~--------eGIi~~~es 354 (397)
T PRK04346 290 LQ-----DEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRL--------EGIIPALES 354 (397)
T ss_pred cc-----cCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHH--------cCCEeccHH
Confidence 10 1123333333 3588874332 11 23569999999999999853 246777764
No 379
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.85 E-value=23 Score=43.48 Aligned_cols=40 Identities=18% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC----Ccccc
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK----GLIVS 404 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~----GLi~~ 404 (615)
-.+.||+|+|||.||+..|..|.. .|. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EGF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeeCCCCCceEEc
Confidence 457999999999999999999875 353 68888875 66543
No 380
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=49.46 E-value=21 Score=39.27 Aligned_cols=31 Identities=29% Similarity=0.656 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 68999999999999988864 24 478888874
No 381
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=49.26 E-value=25 Score=36.65 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=25.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCc
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGL 401 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GL 401 (615)
+--++|+|||+||+..|..|.+. |+ ++.+++++=-
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCC
Confidence 56789999999999999888764 54 6888887633
No 382
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=49.15 E-value=19 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=26.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 4579999999999999987754 364 578888753
No 383
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=49.13 E-value=1.2e+02 Score=31.47 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=28.6
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 427 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
+.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 5566665 88999888754 48899999999 6889987
No 384
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=49.01 E-value=21 Score=36.91 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=28.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
.+-.|+|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999987754 35 468888887543
No 385
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=48.89 E-value=1e+02 Score=35.07 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=63.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc--CCCCCHHH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH--EPVKELVD 429 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~--~~~~~L~e 429 (615)
.+.++||+++|-|-.|+++|+.|.+. | .++++.|.+= ......+++...+. -..+...+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~~-------~~~~~~~~~~~~~~i~~~~g~~~~ 64 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDRP-------APEGLAAQPLLLEGIEVELGSHDD 64 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCCC-------CccchhhhhhhccCceeecCccch
Confidence 34589999999999999999999763 5 4688888641 11111111111111 01111111
Q ss_pred HHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhccc-CCcEEEeeCCCCCCcccCCee
Q 007156 430 AVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWS-QGRAIFASGSPFDPFEYGDNV 508 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT-~GraifASGSPF~pV~~~G~~ 508 (615)
...-..|++|=--|.+ .-++.+.++-+. .-||| +.-|-++... ....|-.||+ ||||
T Consensus 65 -~~~~~~d~vV~SPGi~-~~~p~v~~A~~~--gi~i~-----------~dieL~~r~~~~~p~vaITGT-------NGKT 122 (448)
T COG0771 65 -EDLAEFDLVVKSPGIP-PTHPLVEAAKAA--GIEII-----------GDIELFYRLSGEAPIVAITGT-------NGKT 122 (448)
T ss_pred -hccccCCEEEECCCCC-CCCHHHHHHHHc--CCcEE-----------eHHHHHHHhcCCCCEEEEECC-------CchH
Confidence 2222378887544555 345555554442 33443 2334455543 4566677887 7875
Q ss_pred e
Q 007156 509 F 509 (615)
Q Consensus 509 ~ 509 (615)
-
T Consensus 123 T 123 (448)
T COG0771 123 T 123 (448)
T ss_pred H
Confidence 3
No 386
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=48.65 E-value=20 Score=39.39 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=18.4
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
-.|+|+|||.||...|-.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 479999999999999988864
No 387
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.64 E-value=23 Score=37.13 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=25.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.||.|+|||..|.|||.+++.+ | -+++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----G-------VDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 4899999999999999988753 5 357777763
No 388
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=48.61 E-value=81 Score=31.78 Aligned_cols=97 Identities=20% Similarity=0.212 Sum_probs=51.3
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccc----hhhcc-ccCCCCCHHHH
Q 007156 357 RFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFK----KPWAH-EHEPVKELVDA 430 (615)
Q Consensus 357 riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k----~~fA~-~~~~~~~L~e~ 430 (615)
||+|.|| |..|..+++.|.+ .| .+++++|+. .......+.... -.+.. +..+..++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788875 7777777777654 24 356777642 111001111110 01111 22223457777
Q ss_pred HhccCCcEEEEccCCCCCC----------------CHHHHHHHHccCCCcEEEe
Q 007156 431 VNAIKPTILIGTSGQGRTF----------------TKEVVEAMASLNEKPIIFS 468 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~F----------------teevv~~Ma~~~erPIIFa 468 (615)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 8777899999665532111 2355677776655677773
No 389
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=48.54 E-value=29 Score=36.88 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHc--cCCCcEEEecCCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMAS--LNEKPIIFSLSNPTS 474 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~--~~erPIIFaLSNPts 474 (615)
+-|++||+|..|. |+++++.+.. ...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999886 9999998853 333466665566663
No 390
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=48.49 E-value=59 Score=35.83 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc----
Q 007156 343 ISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA---- 418 (615)
Q Consensus 343 l~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA---- 418 (615)
..++.-....|...|++++|-+.-..++++.|.+ .|+.. +...... .++ +......+...
T Consensus 262 ~~~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~e-----lGm~~------v~~~t~~----~~~-~~~~~~~~~l~~~~~ 325 (407)
T TIGR01279 262 WRALEPHTQLLRGKKIFFFGDNLLELPLARFLKR-----CGMEV------VECGTPY----IHR-RFHAAELALLEGGVR 325 (407)
T ss_pred HHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHH-----CCCEE------EEecCCC----CCh-HHHHHHHhhcCCCCe
Confidence 3444455566899999999999999999999986 27621 2221111 111 00011111111
Q ss_pred -cccCCCCCHHHHHhccCCcEEEEcc
Q 007156 419 -HEHEPVKELVDAVNAIKPTILIGTS 443 (615)
Q Consensus 419 -~~~~~~~~L~e~V~~vkPtvLIG~S 443 (615)
.+..+...|++.++..+||.+||-|
T Consensus 326 v~~~~d~~~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 326 IVEQPDFHRQLQRIRATRPDLVVTGL 351 (407)
T ss_pred EEeCCCHHHHHHHHHhcCCCEEecCc
Confidence 1112223566888999999999876
No 391
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=48.47 E-value=3.5e+02 Score=28.45 Aligned_cols=84 Identities=18% Similarity=0.306 Sum_probs=50.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
..||.|+|.|+.+. +|+.+...|.+ .| ++.++++...... .. + .. + -
T Consensus 47 ~~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~~---------~~---~------~~----~--~ 93 (326)
T PRK10892 47 KGKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAAH---------GD---L------GM----V--T 93 (326)
T ss_pred CCeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhhc---------cc---c------cc----C--C
Confidence 36999999998775 67666666654 34 3444433211100 00 0 00 1 1
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 473 (615)
+-|++|++|..|. |+++++.+. +.+.-|+|-==+||.
T Consensus 94 ~~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 94 PQDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3689999999775 889988864 445557766555555
No 392
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=48.19 E-value=1.1e+02 Score=31.52 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=53.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 356 QRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 356 ~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
.||.++|+ |..|-.+++.+... .++ +=..++|++. ++.. .. ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~---~~-~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLV---GQ-GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccc---cc-CCC--CccccCCHHHhcc--
Confidence 48999999 99998888776431 122 3455677752 1111 11 111 1112367888886
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEe
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFS 468 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFa 468 (615)
++|++|=+|.+. ...++++...+ ...|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~-~G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALE-HGKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHH-cCCCEEEE
Confidence 599999888644 23677666554 35788865
No 393
>PRK06392 homoserine dehydrogenase; Provisional
Probab=48.14 E-value=66 Score=34.83 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=49.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc----cCCCC--CHHH
Q 007156 357 RFLFLGAGEAGTGIAELIALEIS-KQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE----HEPVK--ELVD 429 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~-~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~----~~~~~--~L~e 429 (615)
||.++|.|..|-+++++|.+.-. ++.|+. -+=+.+.|++|.+.+.+.=++.+... +... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKIIS-YKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHHH-HHhcCccccCCCCcCCHHH
Confidence 79999999999999999876210 112321 12355679999888765322222111 1110 01112 5666
Q ss_pred HHhccCCcEEEEccC
Q 007156 430 AVNAIKPTILIGTSG 444 (615)
Q Consensus 430 ~V~~vkPtvLIG~S~ 444 (615)
.++ .++||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999999884
No 394
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=48.02 E-value=28 Score=39.84 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhCcccc--c-ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHH
Q 007156 314 LHEFMTAVKQNYGERIL--I-QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 314 vdeFv~Av~~~~gp~vl--i-QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
.|+|+.+|.+.+|..+- + +-.+ -++.++.-...-|...|+.++|-..-.+|+++.|.+
T Consensus 324 Td~fL~~la~~~g~~ip~~i~~eR~-----rl~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 324 TDEFLMKVSEISGQPIPAELTKERG-----RLVDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-----HHHHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 45777888888874321 1 1111 144444444556788999999999999999999975
No 395
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.95 E-value=90 Score=34.18 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=61.9
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhcc
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAI 434 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~v 434 (615)
.+||+|+|.|-.|..+|+.|.+ .|. +++.+|.+- . .+.. ..+..+.. .....+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~~-~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHERY-LENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhhh-cCCcHHHhc--
Confidence 4689999999999988887754 352 588888641 1 1111 11111000 011222233
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCeee
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDNVF 509 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~~~ 509 (615)
++|++|=..+.. .-.+.+-++..+. -||| +++ |. +-++..+.+.+.|--||| ||||-
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~----~~-~~~~~~~~~~~~I~ITGT-------~GKTT 115 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDI----QL-AFQTPEFTRYPSLGITGS-------TGKTT 115 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHH----HH-HHhhhhcCCCCEEEEECC-------CChHH
Confidence 378999887776 4466666666543 3433 232 11 112122224567888998 78754
No 396
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=47.91 E-value=23 Score=43.81 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=34.4
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|.+.||+++|||.-|+-+++.|+.. |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 567889999999999999999999875 55211 13789999987
No 397
>PLN02427 UDP-apiose/xylose synthase
Probab=47.90 E-value=64 Score=34.43 Aligned_cols=83 Identities=16% Similarity=0.256 Sum_probs=50.4
Q ss_pred HHHhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc-------chhh
Q 007156 346 MKFLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF-------KKPW 417 (615)
Q Consensus 346 lr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~-------k~~f 417 (615)
+.+.||+++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .+...+.+. ..+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 456799999999999996 88888888887652 12 3678788631 110111100 1112
Q ss_pred cc-ccCCCCCHHHHHhccCCcEEEEccCC
Q 007156 418 AH-EHEPVKELVDAVNAIKPTILIGTSGQ 445 (615)
Q Consensus 418 A~-~~~~~~~L~e~V~~vkPtvLIG~S~~ 445 (615)
.+ +..+...+.+++++ +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 11 11222457777875 8999987764
No 398
>PRK09186 flagellin modification protein A; Provisional
Probab=47.90 E-value=26 Score=34.41 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+++.+++|.||+ ..|..+|+.|++ .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 457889999984 444445555543 353 57777653
No 399
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=47.81 E-value=1.1e+02 Score=28.96 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSNPt 473 (615)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 4899988764 334455555444443
No 400
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=47.70 E-value=21 Score=38.23 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=26.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..|+|+|||-+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887531 13 478899986
No 401
>PLN02463 lycopene beta cyclase
Probab=47.66 E-value=21 Score=39.90 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-.|+|+|||.||+.+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 478999999999999987754 364 57778774
No 402
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=47.51 E-value=19 Score=37.85 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.8
Q ss_pred EEEeCcChHHHHHHHHHHHH
Q 007156 358 FLFLGAGEAGTGIAELIALE 377 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~ 377 (615)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999998753
No 403
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=47.47 E-value=25 Score=38.73 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=27.8
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-...+|+|+|+|.||+..|..|.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 446799999999999999887754 24 468888875
No 404
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.24 E-value=45 Score=34.79 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 398 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~ 398 (615)
.||.|+|+|.-|-.+|.-|++ .|.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999988864 2531 2357888886
No 405
>PRK06182 short chain dehydrogenase; Validated
Probab=47.16 E-value=56 Score=32.73 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=39.3
Q ss_pred CCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc---ch-hhccccCCCCCHH
Q 007156 354 ADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KK-PWAHEHEPVKELV 428 (615)
Q Consensus 354 ~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~---k~-~fA~~~~~~~~L~ 428 (615)
+..+++|.|| |-.|..+|+.+.+ .| -++++++++- +.+.+. .. .+.-|..+..++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G-------~~V~~~~r~~-------~~l~~~~~~~~~~~~~Dv~~~~~~~ 62 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QG-------YTVYGAARRV-------DKMEDLASLGVHPLSLDVTDEASIK 62 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCCH-------HHHHHHHhCCCeEEEeeCCCHHHHH
Confidence 3568999997 4445555555443 35 3677777641 112111 11 1111222233555
Q ss_pred HHHhcc-----CCcEEEEccCCC
Q 007156 429 DAVNAI-----KPTILIGTSGQG 446 (615)
Q Consensus 429 e~V~~v-----kPtvLIG~S~~~ 446 (615)
++++.+ ++|+||=..+..
T Consensus 63 ~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 63 AAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 666644 799999877654
No 406
>PRK07588 hypothetical protein; Provisional
Probab=47.15 E-value=23 Score=37.73 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.2
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988864
No 407
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=47.10 E-value=21 Score=37.79 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=26.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999977754 353 68888875
No 408
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=47.04 E-value=24 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=27.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
..|+|+|||-+|+.+|-.|.+ .| .++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G-------~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RG-------WQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CC-------CeEEEEecCC
Confidence 479999999999999999865 36 3699999874
No 409
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.99 E-value=58 Score=36.07 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCccc-----cc---ccchHHHHHHHHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHH
Q 007156 314 LHEFMTAVKQNYGERI-----LI---QGTASVVLAGLISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEI 378 (615)
Q Consensus 314 vdeFv~Av~~~~gp~v-----li---QGTAaVvLAgll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~ 378 (615)
.|+|+.++.+.+|... .| .+...-.|.-+..++.. .....|+.++|-+.-..|+++.|.+.|
T Consensus 247 t~~~l~~i~~~~g~~~~~~~~~i~~e~~~~~~~l~~~~d~l~~---~~~~k~vai~~~~~~~~~l~~~L~~el 316 (427)
T cd01971 247 TAEFLRQVAKFAGIEKAKVEAFIKAEEKRYYHYLERFSDFMAR---WGLPRRFAVIADSTYALGLARFLVNEL 316 (427)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCceEEEECChHHHHHHHHHHHHhc
Confidence 3566677777776432 22 23333344445454442 333589999999999999999997553
No 410
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=46.91 E-value=16 Score=32.34 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
+|++.++|++|+|..|..=+++|+++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999998888887653 3 5788887764
No 411
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=46.90 E-value=30 Score=36.71 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=28.2
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-..++|+|+|+|.||+..|..|.+ .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999999988864 24 478889885
No 412
>PRK06185 hypothetical protein; Provisional
Probab=46.84 E-value=23 Score=37.78 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=26.2
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877754 364 577788763
No 413
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=46.84 E-value=22 Score=37.19 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=24.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999987764 364 566777763
No 414
>PRK08013 oxidoreductase; Provisional
Probab=46.84 E-value=25 Score=37.87 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=25.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+-.|+|+|||.+|+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 4579999999999999977754 365 46677764
No 415
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=46.74 E-value=26 Score=37.45 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=25.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 579999999999999977754 365 56777754
No 416
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=46.71 E-value=31 Score=36.00 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
+..||+++|+|.-|.-+++.|+.....-.++..... -+|.++|.+=
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g-~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGG-LAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCC-CEEEEECCCE
Confidence 568999999999999999999875210001110001 2899999873
No 417
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=46.70 E-value=59 Score=34.09 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc-ccCCCCCHHHH
Q 007156 353 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH-EHEPVKELVDA 430 (615)
Q Consensus 353 L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~-~~~~~~~L~e~ 430 (615)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +..+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 77777777777542 30 136888886522100000001100111111 22222457777
Q ss_pred HhccCCcEEEEccCCCCC----C------------CHHHHHHHHccCCCcEEEecC
Q 007156 431 VNAIKPTILIGTSGQGRT----F------------TKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 431 V~~vkPtvLIG~S~~~g~----F------------teevv~~Ma~~~erPIIFaLS 470 (615)
++. +|++|=+.+.... + +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 8999977664321 1 234566666655567888543
No 418
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=46.65 E-value=50 Score=36.44 Aligned_cols=99 Identities=12% Similarity=0.085 Sum_probs=54.7
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc------ccCCC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH------EHEPV 424 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~------~~~~~ 424 (615)
..|...|+.|+|...-..++++.|.+. |+.. ..+. .+.+. ..-.+.+ .+...... ...+.
T Consensus 295 ~~l~gk~v~i~~~~~~~~~l~~~L~e~-----G~~v----~~v~-~~~~~---~~~~~~~-~~~~~~~~~~~~~v~~~d~ 360 (428)
T cd01965 295 FYLGGKRVAIAGDPDLLLGLSRFLLEM-----GAEP----VAAV-TGTDN---PPFEKRM-ELLASLEGIPAEVVFVGDL 360 (428)
T ss_pred HHhcCCEEEEEcChHHHHHHHHHHHHc-----CCcc----eEEE-EcCCC---chhHHHH-HHhhhhcCCCceEEECCCH
Confidence 457889999999999999999999763 6532 1111 11110 0000001 00000000 01122
Q ss_pred CCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCC
Q 007156 425 KELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPT 473 (615)
Q Consensus 425 ~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPt 473 (615)
..+++.++..+||++||-|-. +.+|+....|.| ..|.|.
T Consensus 361 ~el~~~i~~~~pdliig~~~~---------~~~a~~~~ip~i-~~~~P~ 399 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSHG---------RYLARDLGIPLV-RVGFPI 399 (428)
T ss_pred HHHHHHhhccCCCEEEECchh---------HHHHHhcCCCEE-EecCCc
Confidence 457778888999999996642 234433467775 567775
No 419
>PRK13937 phosphoheptose isomerase; Provisional
Probab=46.57 E-value=70 Score=31.40 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=18.5
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHH
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMA 458 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma 458 (615)
+-|++|++|..|. |+++++.+.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~ 127 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALE 127 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHH
Confidence 4699999999775 999998874
No 420
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=46.53 E-value=22 Score=41.50 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=27.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++.+|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 356899999999999999888651 265 46778876
No 421
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=46.48 E-value=29 Score=37.52 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=25.8
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
|+|+|||.||+.+|-.|.+. ..| .++.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g-------~~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPD-------FRIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCC-------CeEEEEeCCCCC
Confidence 79999999999999877643 124 467788875433
No 422
>PRK08244 hypothetical protein; Provisional
Probab=46.42 E-value=24 Score=39.19 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=18.6
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 569999999999999988865
No 423
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=46.27 E-value=1.8e+02 Score=29.27 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=27.9
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 427 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
+.+.++. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 256 ~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 256 IAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred HHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 5566665 88999888765 47888999999 5789985
No 424
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=46.25 E-value=25 Score=37.57 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|+|+|||-+|+.+|..|.. .| .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 69999999999999988864 24 468888885
No 425
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.22 E-value=29 Score=41.07 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+-.+.+|+|+|||.||+..|..|... | .++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~-----G-------~~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKR-----G-------YDVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 34678999999999999999998653 5 368889874
No 426
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=45.97 E-value=24 Score=38.80 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=25.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+||+|||+||+..|..+.+ .| +++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999988865 35 578899975
No 427
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.90 E-value=23 Score=38.67 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-.+||+|+|.||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999988652 4 579999975
No 428
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=45.87 E-value=23 Score=39.02 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
|++|+|+|+||+..|..+.+ .| +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 79999999999999988865 25 579999975
No 429
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=45.85 E-value=21 Score=38.25 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=25.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999988754 364 57777765
No 430
>PRK14694 putative mercuric reductase; Provisional
Probab=45.69 E-value=28 Score=38.59 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 4 478899975
No 431
>PRK12831 putative oxidoreductase; Provisional
Probab=45.69 E-value=27 Score=39.00 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-...+|+|+|+|.||+..|..|... | .++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-----G-------~~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-----G-------YDVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 3567999999999999999888752 5 367888864
No 432
>PLN02527 aspartate carbamoyltransferase
Probab=45.67 E-value=2.7e+02 Score=29.96 Aligned_cols=77 Identities=17% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcccc-CC---CCCH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEH-EP---VKEL 427 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~-~~---~~~L 427 (615)
++++.||+++|.+.=+ -+++-++.++.+..|+ +|+++-.+|+-- ++....++++. .. ..++
T Consensus 148 ~l~g~kva~vGD~~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~~-------~~~~~~~~~~~g~~~~~~~d~ 212 (306)
T PLN02527 148 RLDGIKVGLVGDLANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVKM-------KDDIKDYLTSKGVEWEESSDL 212 (306)
T ss_pred CcCCCEEEEECCCCCC-hhHHHHHHHHHhcCCC-------EEEEECCCccCC-------CHHHHHHHHHcCCEEEEEcCH
Confidence 4788999999988432 2455554444332243 688888887621 11112233321 11 2689
Q ss_pred HHHHhccCCcEEEEccCC
Q 007156 428 VDAVNAIKPTILIGTSGQ 445 (615)
Q Consensus 428 ~e~V~~vkPtvLIG~S~~ 445 (615)
.|+++. +||+.-.+.+
T Consensus 213 ~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 213 MEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHhCC--CCEEEECCcc
Confidence 999997 9999987754
No 433
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=45.64 E-value=21 Score=39.95 Aligned_cols=35 Identities=31% Similarity=0.494 Sum_probs=27.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+||||+|+|-+|+..|..|.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999999886532 1 2468899985
No 434
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=45.60 E-value=27 Score=38.69 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=27.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 35799999999999999888652 5 579999975
No 435
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=45.60 E-value=79 Score=33.71 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=25.8
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHccCC--CcEEEecCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASLNE--KPIIFSLSNPT 473 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~~e--rPIIFaLSNPt 473 (615)
+-|++||+|..|. |+++++.+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 8999988864333 35544334555
No 436
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=45.58 E-value=36 Score=36.16 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=28.3
Q ss_pred CCcEEEEccCCCCCCCHHHHHHHHcc--CCCcEEEecCCCCC
Q 007156 435 KPTILIGTSGQGRTFTKEVVEAMASL--NEKPIIFSLSNPTS 474 (615)
Q Consensus 435 kPtvLIG~S~~~g~Fteevv~~Ma~~--~erPIIFaLSNPts 474 (615)
+-|++||+|..|. |+++++.+..- ..-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999876 99999987533 33477776667763
No 437
>PRK10262 thioredoxin reductase; Provisional
Probab=45.55 E-value=20 Score=37.30 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.7
Q ss_pred CCCceEEEeCcChHHHHHHHHHHH
Q 007156 353 LADQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~ 376 (615)
-+..+|||+|||.||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999988865
No 438
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=45.49 E-value=25 Score=36.90 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=25.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RG-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 58999999999999988865 25 368888875
No 439
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.28 E-value=66 Score=31.73 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=23.1
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+++.+++|.||+. .|..+|+.++ + .| -+++++++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~----~-~G-------~~v~~~~r~ 39 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFA----R-EG-------AKVVVGARR 39 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHH----H-CC-------CEEEEEeCC
Confidence 46778999999853 4455555554 3 35 368888774
No 440
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=45.18 E-value=26 Score=38.36 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDS 398 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~ 398 (615)
.|||+|||.||+..|..+... | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888652 5 47889998
No 441
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=45.17 E-value=26 Score=40.00 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=27.1
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+-.|+|+|+|..|++||..|.. .|+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECC
Confidence 3579999999999999999875 364 68888875
No 442
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=45.11 E-value=23 Score=33.59 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=26.0
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+++++|+|+|+|..|+-+|..|... | +++.++-++
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~-----g-------~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKA-----G-------KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTT-----C-------SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhh-----C-------CEEEEEecC
Confidence 67789999999999999888777542 3 677776553
No 443
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.08 E-value=47 Score=34.34 Aligned_cols=149 Identities=16% Similarity=0.252 Sum_probs=85.9
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHH
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVD 429 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e 429 (615)
-...+-.++||+|+=--|..+|++|..+ .+++++|.+ ++.+.|....- .+.+
T Consensus 40 ~~~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~------------p~~r~~lp~~v---~Fr~ 91 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIH------------PFMRGFLPNNV---KFRN 91 (254)
T ss_pred hcccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCC------------HHHHhcCCCCc---cHhh
Confidence 3345567999999999999999888542 579999874 22222222111 1111
Q ss_pred HHhcc--CCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCCcCCCCHHHHhcccCCcEEEeeCCCCCCcccCCe
Q 007156 430 AVNAI--KPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFDPFEYGDN 507 (615)
Q Consensus 430 ~V~~v--kPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts~aEctpedA~~wT~GraifASGSPF~pV~~~G~ 507 (615)
.++.. .-|++|-+.|-|| .++|.++.. .|=+|-.-||++ -..-++.|++.+- ---.++++
T Consensus 92 ~~~~~~G~~DlivDlTGlGG-~~Pe~L~~f-----np~vfiVEdP~g--n~~D~~I~eyn~T------~eRlea~e---- 153 (254)
T COG4017 92 LLKFIRGEVDLIVDLTGLGG-IEPEFLAKF-----NPKVFIVEDPKG--NVFDVDIYEYNNT------YERLEAFE---- 153 (254)
T ss_pred hcCCCCCceeEEEeccccCC-CCHHHHhcc-----CCceEEEECCCC--CCCccchhhcCCH------HHHHHhhH----
Confidence 12211 2478899999887 688888765 577888889984 2222233332110 00000000
Q ss_pred eeCcCCCccccccchhhHHHHHcCCcccCHHHHHHHHHHHHcc
Q 007156 508 VFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAAAEALAGQ 550 (615)
Q Consensus 508 ~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laAA~aLA~~ 550 (615)
..--.-.=-.+++|=.|+.-.+|-+.+..||.+|-+.
T Consensus 154 ------e~~k~~l~~~~~~AKTSGTmTLtv~tir~aa~~le~~ 190 (254)
T COG4017 154 ------EKAKVGLLKTYRKAKTSGTMTLTVDTIRDAARELESL 190 (254)
T ss_pred ------hhhhhhhhhccccccccceEEEEhHHHHHHHHHHhhh
Confidence 0000000113566677888888999999999999654
No 444
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=44.96 E-value=2.1e+02 Score=32.49 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=77.9
Q ss_pred CcccccccccCCChhhHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHhCCCCCCceEEEeCc----------
Q 007156 294 DEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGERILIQGTASVVLAGLISAMKFLGGSLADQRFLFLGA---------- 363 (615)
Q Consensus 294 Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~vliQGTAaVvLAgll~Alr~~g~~L~d~riv~~GA---------- 363 (615)
||||+=|+-+... ... .|++..++.= ++---=|+--+..||...|+++++.||+++|=
T Consensus 273 DP~fl~~ka~~yg--~~~----rlI~tAreIN------~~mP~~Vv~~~~~al~~~~k~~~~skIlvlGlayK~dvdD~R 340 (436)
T COG0677 273 DPYFLTWKAPEYG--LPA----RLIRTAREIN------DSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLR 340 (436)
T ss_pred CchheeecccccC--Cch----HHHHHHHHHh------ccCCHHHHHHHHHHHHHcCCCCcCceEEEEEeeecCCCcccc
Confidence 8999988654321 112 2333322211 12222345556667778999999999999994
Q ss_pred ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEcc
Q 007156 364 GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTS 443 (615)
Q Consensus 364 GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S 443 (615)
-|=.+.|.++|.+. | .++..+|.. ..+.+..+...+-....++++++. .|++|=++
T Consensus 341 eSPa~~ii~~l~~~-----g-------~~v~~~DP~----------v~~~~~~~~~~~~~~~~~e~al~~--~D~vVi~t 396 (436)
T COG0677 341 ESPALDIIELLEEW-----G-------GEVLVYDPY----------VKELPTREDGEGVTLAILEEALKD--ADAVVIAT 396 (436)
T ss_pred cCchHHHHHHHHHh-----C-------CeEEEECCC----------CCcchhhhhccccchhhHHHHhcc--CCEEEEEe
Confidence 24456777777553 3 467777774 222222222221224579999997 88888665
Q ss_pred CCCCC---CCHHHHHHHHccCCCcEEEecCC
Q 007156 444 GQGRT---FTKEVVEAMASLNEKPIIFSLSN 471 (615)
Q Consensus 444 ~~~g~---Fteevv~~Ma~~~erPIIFaLSN 471 (615)
... . ++.+-+.. +.++|+=-=|
T Consensus 397 DH~-~fk~id~~~i~~-----~~~vivDtrn 421 (436)
T COG0677 397 DHS-EFKEIDYEAIGK-----EAKVIVDTRN 421 (436)
T ss_pred ccH-HhhcCCHHHhcc-----CCcEEEECcc
Confidence 543 4 44444433 2667774433
No 445
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=44.85 E-value=52 Score=38.67 Aligned_cols=93 Identities=16% Similarity=0.271 Sum_probs=52.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
.||.|+|+|..|..+|..+... |. ..+++.+|++ .++ +...+ .+........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~-~~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAV-SLGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHH-HCCCCCcccCCHHHHhcC--
Confidence 6899999999999999988653 53 2468888874 111 11111 010000122356666664
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccC-CCcEEEecC
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASLN-EKPIIFSLS 470 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~~-erPIIFaLS 470 (615)
+|++| ++... ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 67666 44433 34667777776532 333444444
No 446
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=44.65 E-value=27 Score=43.29 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=28.4
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
-..+||+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G-------~~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AG-------HPVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEecc
Confidence 457899999999999999999865 35 357788865
No 447
>PRK11445 putative oxidoreductase; Provisional
Probab=44.60 E-value=25 Score=37.22 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.4
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~ 376 (615)
.|+|+|||.||...|..|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999987754
No 448
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=44.57 E-value=26 Score=39.37 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=27.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..|||+|+|.+|+++|..+.. .|+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 579999999999999999975 364 58889876
No 449
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=44.56 E-value=28 Score=37.32 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.9
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~ 376 (615)
..+|+|+|||.||+..|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4679999999999999988765
No 450
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=44.48 E-value=41 Score=35.75 Aligned_cols=117 Identities=15% Similarity=0.209 Sum_probs=64.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIK 435 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vk 435 (615)
+||.++|.|+.|-.|++.|... +. +..+-.++.|+.. ++ .+.++...+.+.+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~~-------~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----DL-------PPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----HH-------HHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999987532 11 1123345555531 11 1223322334578888653 37
Q ss_pred CcEEEEccCCCCCCCHHHHHHHHccCCCcEEE---ecCCCCCcCCCCHHHHhcccCCcEEEeeC
Q 007156 436 PTILIGTSGQGRTFTKEVVEAMASLNEKPIIF---SLSNPTSQSECTAEEAYTWSQGRAIFASG 496 (615)
Q Consensus 436 PtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF---aLSNPts~aEctpedA~~wT~GraifASG 496 (615)
||+++=+.++. ++.+-..+.+.+ ...=+|+ ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~-g~dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTA-GLDMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhc-CCCEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988865 444444444432 2222232 244443 122222333335678888877
No 451
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=44.43 E-value=27 Score=40.78 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
...||+|+|||.||+..|..|.. .| .++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G-------~~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KG-------HDVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 45799999999999999988865 25 357778764
No 452
>PRK07774 short chain dehydrogenase; Provisional
Probab=44.04 E-value=45 Score=32.58 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++++.++||.|| |..|..+++.+++ .| .+++++|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~-----~g-------~~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAR-----EG-------ASVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 467788999998 5555555555543 35 368888874
No 453
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=44.04 E-value=34 Score=36.99 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHHHHHhCCCCCCceEEEeCc-ChHHHHHHHHHHH
Q 007156 332 QGTASVVLAGLISAMKFLGGSLADQRFLFLGA-GEAGTGIAELIAL 376 (615)
Q Consensus 332 QGTAaVvLAgll~Alr~~g~~L~d~riv~~GA-GsAG~GIA~ll~~ 376 (615)
-+||-++.-+++.+...+|.+|++..+-|+|| |..|.+||+.|.-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 78899999999999999999999999999998 8999999999864
No 454
>PRK07538 hypothetical protein; Provisional
Probab=43.94 E-value=26 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.3
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~ 376 (615)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999999888877654
No 455
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=43.92 E-value=1.1e+02 Score=34.72 Aligned_cols=122 Identities=14% Similarity=0.229 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCc--cccc-ccchHHHHHHHHHHHHH-hCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 007156 315 HEFMTAVKQNYGE--RILI-QGTASVVLAGLISAMKF-LGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETR 390 (615)
Q Consensus 315 deFv~Av~~~~gp--~vli-QGTAaVvLAgll~Alr~-~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeAr 390 (615)
|+|+.++.+.+|. +..| +.++. .+-+++...|- +..=+...||.|+|--.-.+|+++.|...| |+.
T Consensus 237 d~fLr~L~~~~g~~~~~~I~~er~~-~~da~~d~~r~~~~~~~~~k~vaI~gd~d~~~gl~~fL~~El----Gm~----- 306 (468)
T TIGR02014 237 TAFLRKLGRLLGLDPEPFIEREKRT-TLKPVWDLWRSVTQDFFGTARFGIVASETYARGIRHVLEDEL----GLP----- 306 (468)
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHH-HHHHHHHhhhhhcccccCCceEEEEcCHHHHHHHHHHHHHHC----CCc-----
Confidence 4677778777762 2334 44433 23333333343 233345668989999999999999998664 872
Q ss_pred CeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecC
Q 007156 391 KKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLS 470 (615)
Q Consensus 391 k~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLS 470 (615)
-.+.++++ . ....+...+.+.|+..+|++|||.|-- +..++... ..-|. +..+
T Consensus 307 -~~~~~t~~----------v--------~~~~D~~~i~~~i~~~~p~ll~Gss~e-----r~~~a~~~--~~~pl-Ir~g 359 (468)
T TIGR02014 307 -CLFSLARK----------A--------GSKTDNNAVRKEIVQKQPLVLYGSMNE-----KIYLAEAD--AKSRF-IPAS 359 (468)
T ss_pred -eEEEeecc----------e--------eecCCHHHHHHHHhhcCCCEEEEChHh-----HHHHHhcC--CCCCe-EEec
Confidence 45555531 0 011122357788888899999997741 12443321 12344 4677
Q ss_pred CCC
Q 007156 471 NPT 473 (615)
Q Consensus 471 NPt 473 (615)
-|+
T Consensus 360 fP~ 362 (468)
T TIGR02014 360 FPG 362 (468)
T ss_pred CCc
Confidence 775
No 456
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=43.91 E-value=31 Score=37.85 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.6
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 34699999999999999887652 4 578899983
No 457
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=43.81 E-value=29 Score=38.94 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.+++++||++|+|..|+-||..|... -++++++.+.+
T Consensus 201 ~~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 201 PFKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 46899999999999999999988653 26788877654
No 458
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=43.45 E-value=27 Score=37.00 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.3
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 4579999999999999977653 364 578888763
No 459
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=43.42 E-value=21 Score=34.08 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCccccc--------ccchHHH----HHHHHHHHHHhCCCCC-----CceEEEeCcChHHH
Q 007156 307 GQEYAELLHEFMTAVKQNYGERILI--------QGTASVV----LAGLISAMKFLGGSLA-----DQRFLFLGAGEAGT 368 (615)
Q Consensus 307 g~ey~~~vdeFv~Av~~~~gp~vli--------QGTAaVv----LAgll~Alr~~g~~L~-----d~riv~~GAGsAG~ 368 (615)
.+....+.+++. .+.+.|.|..+. +...+.. -..++.++...|.++. ..|-.+.|.|.|.-
T Consensus 41 ~~rl~~I~~~l~-~~i~~~~Pd~vaiE~~~~~~n~~s~~~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~~tG~G~A~K 118 (154)
T cd00529 41 PSRLKTIYDGLN-EVIDQFQPDVVAIERVFFAKNPDSALKLGQARGALILALANRNLPVFEYTPNQVKKAVTGYGKADK 118 (154)
T ss_pred HHHHHHHHHHHH-HHHHHhCCCEEEEEEhhcccChHHHHHHHHHHHHHHHHHHHcCCCEEEEccCeeEEEEECCCCCCH
Confidence 334455555544 444677777555 2222223 4456666777777754 45778889998864
No 460
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=43.38 E-value=44 Score=37.23 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=55.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCcccc---chhhcc-ccCCCCCHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHF---KKPWAH-EHEPVKELVDAV 431 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~---k~~fA~-~~~~~~~L~e~V 431 (615)
.+||++|||-.|-.+|..|++- |- .+|++.|+. .+..+.+... +..... |..+.+.|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998752 31 689999884 1111111111 111211 334456799999
Q ss_pred hccCCcEEEEccCCCCCCCHHHHHHHHc
Q 007156 432 NAIKPTILIGTSGQGRTFTKEVVEAMAS 459 (615)
Q Consensus 432 ~~vkPtvLIG~S~~~g~Fteevv~~Ma~ 459 (615)
++ .|+.|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 599887654 3578888877654
No 461
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=43.37 E-value=1.1e+02 Score=31.96 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=47.7
Q ss_pred CCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc-ccCCccCccc------cchhhcc-ccC
Q 007156 352 SLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI-VSSRLESLQH------FKKPWAH-EHE 422 (615)
Q Consensus 352 ~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi-~~~R~~~L~~------~k~~fA~-~~~ 422 (615)
+++..+|+|.|| |-.|..+++.|+. .|. +++++|+..-- ...+...+.. .+..|.. +..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~-----~G~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLS-----KGY-------EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLS 70 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEecccccccccchhhhccccccccCceEEEEecCC
Confidence 567789999997 7888888888765 253 57777764210 0000000100 0011111 222
Q ss_pred CCCCHHHHHhccCCcEEEEccCC
Q 007156 423 PVKELVDAVNAIKPTILIGTSGQ 445 (615)
Q Consensus 423 ~~~~L~e~V~~vkPtvLIG~S~~ 445 (615)
+..++.++++..+||++|=+.+.
T Consensus 71 d~~~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 71 DASSLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred CHHHHHHHHHHcCCCEEEECCcc
Confidence 23467788888889999988775
No 462
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=43.34 E-value=31 Score=37.10 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.5
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3579999999999999977654 365 57777774
No 463
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=43.22 E-value=89 Score=32.26 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=25.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.||.|+|.|..|..+|..+.. .| .+++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g-------~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AG-------YSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CC-------CeEEEEcCC
Confidence 479999999999999999865 24 257777764
No 464
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=43.13 E-value=20 Score=44.31 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.3
Q ss_pred CCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 351 GSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 351 ~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
++|.+.+|+|+|+|.-|.-||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568889999999999999999999875 75 7999999873
No 465
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=43.11 E-value=90 Score=30.73 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=25.8
Q ss_pred CCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 350 GGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 350 g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
..++++.+++|.||+. ||...++..+.+ .|. +++++|+.
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 4568889999999732 344455555443 363 78999885
No 466
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=42.98 E-value=1.2e+02 Score=30.07 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccch-hhccccCCCCCHHHH
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKK-PWAHEHEPVKELVDA 430 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~-~fA~~~~~~~~L~e~ 430 (615)
.|++.++||.||+. ||...++..+.+ .| -+++++|++.- + +...+. .+.-+..+..++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~----~---~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG----D---GQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc----c---cccCceEEEEccCCCHHHHHHH
Confidence 46788999999743 444555555444 35 36777776421 1 111111 111122222345555
Q ss_pred Hhcc-----CCcEEEEccCC
Q 007156 431 VNAI-----KPTILIGTSGQ 445 (615)
Q Consensus 431 V~~v-----kPtvLIG~S~~ 445 (615)
++.+ ++|++|=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999977664
No 467
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=42.96 E-value=1.5e+02 Score=33.79 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.4
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 427 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
+.+..+. .++++=.|-.- .|.--++++|| +..|+|-
T Consensus 386 ~~~~~~~--adv~v~pS~~E-gfgl~~lEAma--~G~PVI~ 421 (500)
T TIGR02918 386 LSEVYKD--YELYLSASTSE-GFGLTLMEAVG--SGLGMIG 421 (500)
T ss_pred HHHHHHh--CCEEEEcCccc-cccHHHHHHHH--hCCCEEE
Confidence 4455554 78899878655 59999999998 6778876
No 468
>PRK12862 malic enzyme; Reviewed
Probab=42.96 E-value=17 Score=43.71 Aligned_cols=92 Identities=23% Similarity=0.207 Sum_probs=56.9
Q ss_pred hhcCCCCCceeee---------------eecCCCCccccccCcccccccccCCChhhHHHHHHHHHHHHHHHhCcc-ccc
Q 007156 268 ALGGIRPSACLPV---------------TIDVGTNNEKLLDDEFYIGLRQKRAIGQEYAELLHEFMTAVKQNYGER-ILI 331 (615)
Q Consensus 268 a~gGI~P~~~LPI---------------~LDvGTnne~LL~Dp~YlGlr~~Ri~g~ey~~~vdeFv~Av~~~~gp~-vli 331 (615)
-+|.+-|...+|| +||+||||+ || ||||++|+.+| |+ ..|
T Consensus 84 GlGd~G~~~~~pv~egK~~l~~~~~gi~~~~i~~~~~----d~-------------------d~~v~~v~~~~-p~f~~i 139 (763)
T PRK12862 84 GLGNIGPLASKPVMEGKAVLFKKFAGIDVFDIELDES----DP-------------------DKLVEIVAALE-PTFGGI 139 (763)
T ss_pred cccccCcccccchHHHHHHHHHhhcCCCccccccCCC----CH-------------------HHHHHHHHHhC-CCccee
Confidence 3677888888999 689999987 55 79999999999 77 455
Q ss_pred ------ccchHHHHHHHHHHHHHhCCC-CC-CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 007156 332 ------QGTASVVLAGLISAMKFLGGS-LA-DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLV 396 (615)
Q Consensus 332 ------QGTAaVvLAgll~Alr~~g~~-L~-d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lv 396 (615)
.-.+--++.-+-..+ +.+ +. || =|+|.+..|-+|-. +.- .|-+.++. +|.++
T Consensus 140 ~~ED~~~~~~f~i~~~~~~~~---~ip~f~DD~------~GTa~v~la~l~~a-~~~-~~~~~~~~--~iv~~ 199 (763)
T PRK12862 140 NLEDIKAPECFYIERELRERM---KIPVFHDDQ------HGTAIIVAAALLNG-LKL-VGKDIEDV--KLVAS 199 (763)
T ss_pred eeecccCchHHHHHHHHHhcC---CCceEecCc------ccHHHHHHHHHHHH-HHH-hCCChhhc--EEEEE
Confidence 344444333222211 112 22 33 36777788887744 322 46666554 45543
No 469
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=42.84 E-value=34 Score=35.53 Aligned_cols=32 Identities=41% Similarity=0.787 Sum_probs=26.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.||.|+|+|..|.+||..++.. | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998753 5 468888864
No 470
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=42.77 E-value=41 Score=39.29 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhcc------------
Q 007156 353 LADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAH------------ 419 (615)
Q Consensus 353 L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~------------ 419 (615)
+.+++|++-|| ||-|-.++++++.. + .++|.++|++=. ++....+++.+
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~ig 309 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYIG 309 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEec
Confidence 67899999987 57788888887653 3 488999988521 22222233332
Q ss_pred ccCCCCCHHHHHhccCCcEEEEccCC
Q 007156 420 EHEPVKELVDAVNAIKPTILIGTSGQ 445 (615)
Q Consensus 420 ~~~~~~~L~e~V~~vkPtvLIG~S~~ 445 (615)
+..+...+.++++..|||+++=..+-
T Consensus 310 dVrD~~~~~~~~~~~kvd~VfHAAA~ 335 (588)
T COG1086 310 DVRDRDRVERAMEGHKVDIVFHAAAL 335 (588)
T ss_pred ccccHHHHHHHHhcCCCceEEEhhhh
Confidence 12223469999999999999987664
No 471
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=42.55 E-value=25 Score=37.30 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.7
Q ss_pred eEEEeCcChHHHHHHHHHHH
Q 007156 357 RFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~ 376 (615)
+|+|+|||.||+..|-.|.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988765
No 472
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=42.46 E-value=27 Score=39.85 Aligned_cols=32 Identities=13% Similarity=0.334 Sum_probs=25.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999988764 24 4688888653
No 473
>PRK05868 hypothetical protein; Validated
Probab=42.32 E-value=31 Score=37.03 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=16.9
Q ss_pred ceEEEeCcChHHHHHHHHHHH
Q 007156 356 QRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~ 376 (615)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 378999999999888877654
No 474
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=42.26 E-value=28 Score=37.60 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=25.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
-|+|+|||-||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 489999999999999998764 64 477888643
No 475
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=42.26 E-value=18 Score=41.25 Aligned_cols=44 Identities=34% Similarity=0.332 Sum_probs=31.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCC--ChhhhcCeE-----EEEccCCcccc
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNM--PLEETRKKI-----WLVDSKGLIVS 404 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gl--s~eeArk~i-----~lvD~~GLi~~ 404 (615)
+||+|+|||-||++.|..|+++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999875 54 344555432 12566666654
No 476
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=42.19 E-value=31 Score=37.95 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=23.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
|||+|+|.||+.-|-.... .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888876654 36 478999998865
No 477
>PRK08265 short chain dehydrogenase; Provisional
Probab=41.93 E-value=36 Score=34.02 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++++++++|.||.+ ||...|+..+.+ .|. +++++|++
T Consensus 3 ~~~~k~vlItGas~---gIG~~ia~~l~~-~G~-------~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGAT---LIGAAVARALVA-AGA-------RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCC---hHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 47789999999733 344444444443 363 68888874
No 478
>PRK07890 short chain dehydrogenase; Provisional
Probab=41.87 E-value=78 Score=31.05 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+++.+++|.||++ ||...|+..+.+ .|. +++++|+.
T Consensus 3 l~~k~vlItGa~~---~IG~~la~~l~~-~G~-------~V~~~~r~ 38 (258)
T PRK07890 3 LKGKVVVVSGVGP---GLGRTLAVRAAR-AGA-------DVVLAART 38 (258)
T ss_pred cCCCEEEEECCCC---cHHHHHHHHHHH-cCC-------EEEEEeCC
Confidence 5678999999843 444555555444 363 78888874
No 479
>PRK06834 hypothetical protein; Provisional
Probab=41.56 E-value=34 Score=38.51 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=27.6
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
.+..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 365 477788753
No 480
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=41.55 E-value=82 Score=34.74 Aligned_cols=119 Identities=18% Similarity=0.317 Sum_probs=77.7
Q ss_pred HHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCC
Q 007156 347 KFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKE 426 (615)
Q Consensus 347 r~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~ 426 (615)
|.+..=+.....|+.|=|-.|-|+|.-|... | .++++..- |-++..|.. -+.-+..+
T Consensus 206 raTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~-----g-------~~VivTEi---------DPI~ALQAa--MeG~~V~t 262 (434)
T KOG1370|consen 206 RATDVMIAGKVAVVCGYGDVGKGCAQALKGF-----G-------ARVIVTEI---------DPICALQAA--MEGYEVTT 262 (434)
T ss_pred hhhhheecccEEEEeccCccchhHHHHHhhc-----C-------cEEEEecc---------CchHHHHHH--hhccEeee
Confidence 4556667778899999999999999777432 3 35553221 223333321 23334578
Q ss_pred HHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCC------------CCCcCC-CCHH-HHhcccCCcEE
Q 007156 427 LVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSN------------PTSQSE-CTAE-EAYTWSQGRAI 492 (615)
Q Consensus 427 L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSN------------Pts~aE-ctpe-dA~~wT~Grai 492 (615)
|+||++. .|+++-+.+...+.+.+..+.|. +.-|+--+-- |...-| +.|+ |=|.|.+||.|
T Consensus 263 m~ea~~e--~difVTtTGc~dii~~~H~~~mk---~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~gr~i 337 (434)
T KOG1370|consen 263 LEEAIRE--VDIFVTTTGCKDIITGEHFDQMK---NDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNGKHI 337 (434)
T ss_pred HHHhhhc--CCEEEEccCCcchhhHHHHHhCc---CCcEEeccccccceeehhhccCCcceeeecccccceeeccCCcEE
Confidence 9999997 89999999999999999999996 4455543321 221111 1122 56788888876
Q ss_pred E
Q 007156 493 F 493 (615)
Q Consensus 493 f 493 (615)
+
T Consensus 338 I 338 (434)
T KOG1370|consen 338 I 338 (434)
T ss_pred E
Confidence 5
No 481
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=41.50 E-value=74 Score=38.63 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=64.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccc--cCCCCCHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALE---ISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHE--HEPVKELV 428 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~---~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~--~~~~~~L~ 428 (615)
...+|.++|-|..|.|++++|.+. +.++.|+.. +=.-++|++|.+.+.+.-++......|... ..+...+.
T Consensus 457 ~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~ 532 (810)
T PRK09466 457 KRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLF 532 (810)
T ss_pred ceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHH
Confidence 457899999999999999999764 223334421 123457998887776532222222223221 12234566
Q ss_pred HHHhccCCc--EEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 429 DAVNAIKPT--ILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 429 e~V~~vkPt--vLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
|.+....++ |+|=+++.. -....+.+++. +...+|-
T Consensus 533 e~i~~~~~~~~vvVd~t~~~-~~~~~~~~aL~--~G~~VVt 570 (810)
T PRK09466 533 LWLRAHPYDELVVLDVTASE-QLALQYPDFAS--HGFHVIS 570 (810)
T ss_pred HHHhhcCCCCcEEEECCCCh-HHHHHHHHHHH--cCCEEEc
Confidence 777765664 899888733 34455667776 4566665
No 482
>PRK10015 oxidoreductase; Provisional
Probab=41.48 E-value=30 Score=38.15 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=25.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
-.|+|+|||.||+..|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988754 364 477777653
No 483
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.48 E-value=33 Score=37.64 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=27.7
Q ss_pred CceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 355 DQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
+..|+|+|||.||+..|..+.+. | .++.++|++.
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~~ 38 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERYR 38 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEeccc
Confidence 35699999999999999888653 5 5899999853
No 484
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=41.45 E-value=35 Score=38.38 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=27.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
...+|+|+|+|.||+..|..|.. .| .+++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g-------~~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AG-------HTVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cC-------CeEEEEecC
Confidence 35799999999999999988864 25 368888865
No 485
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=41.44 E-value=1e+02 Score=30.51 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=50.5
Q ss_pred CCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHh
Q 007156 353 LADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVN 432 (615)
Q Consensus 353 L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~ 432 (615)
.++.||.|+|.|..+ .+|..+...|..+.++.. --.+++..+....+.. -. +-..+...|++ ...+.
T Consensus 42 ~~~~rI~i~G~G~S~-~~A~~~a~~l~~~~~~~r--~g~~~~~~~d~~~~~~-~~-~d~~~~~~~~~-------~~~~~- 108 (192)
T PRK00414 42 KAGGKVLSCGNGGSH-CDAMHFAEELTGRYRENR--PGYPAIAISDVSHLSC-VS-NDFGYDYVFSR-------YVEAV- 108 (192)
T ss_pred HCCCEEEEEeCcHHH-HHHHHHHHHhcccccCCC--CCceEEecCcHHHHhh-hh-ccCCHHHHHHH-------HHHHh-
Confidence 457899999999987 566666655532112110 0122332211111110 00 00011111211 11111
Q ss_pred ccCCcEEEEccCCCCCCCHHHHHHHH--ccCCCcEEEecCC
Q 007156 433 AIKPTILIGTSGQGRTFTKEVVEAMA--SLNEKPIIFSLSN 471 (615)
Q Consensus 433 ~vkPtvLIG~S~~~g~Fteevv~~Ma--~~~erPIIFaLSN 471 (615)
.-+-|++|++|..|. |+++++.+. +...-|+|-=-+|
T Consensus 109 ~~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~g~~iI~iT~~ 147 (192)
T PRK00414 109 GREGDVLLGISTSGN--SGNIIKAIEAARAKGMKVITLTGK 147 (192)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 124699999999774 999998874 3334455543333
No 486
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=41.40 E-value=37 Score=33.78 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=23.7
Q ss_pred CCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 352 SLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 352 ~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
++++.+++|.||+ --|..+|+.+++ .| -+++++|++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~-----~G-------~~V~~~~r~ 38 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVA-----EG-------ARVAVLDKS 38 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 3678899999974 345556655543 35 368888764
No 487
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=41.31 E-value=1.7e+02 Score=28.55 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=40.8
Q ss_pred CCCCceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHH
Q 007156 352 SLADQRFLFLGAGE-AGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDA 430 (615)
Q Consensus 352 ~L~d~riv~~GAGs-AG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~ 430 (615)
.+++.+++|.||++ -|..+|+.+++ .| -+++++|++-+ ......+..++ -+..+..++.++
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~-----~G-------~~v~~~~~~~~--~~~~~~~~~~~----~D~~~~~~~~~~ 66 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVE-----AG-------AKVIGFDQAFL--TQEDYPFATFV----LDVSDAAAVAQV 66 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----CC-------CEEEEEecchh--hhcCCceEEEE----ecCCCHHHHHHH
Confidence 47788999999854 55556665543 35 36778887641 11111111111 121222234444
Q ss_pred Hhcc-----CCcEEEEccCCC
Q 007156 431 VNAI-----KPTILIGTSGQG 446 (615)
Q Consensus 431 V~~v-----kPtvLIG~S~~~ 446 (615)
++.+ ++|++|-..+..
T Consensus 67 ~~~~~~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 67 CQRLLAETGPLDVLVNAAGIL 87 (252)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 4432 479999887653
No 488
>PLN02568 polyamine oxidase
Probab=41.24 E-value=18 Score=41.48 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred CCceEEEeCcChHHHHHHHHHHHH
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALE 377 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~ 377 (615)
+..+|+|+|||.||+..|..|...
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 489
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=40.92 E-value=32 Score=38.86 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.9
Q ss_pred CceEEEeCcChHHHHHHHHHHH
Q 007156 355 DQRFLFLGAGEAGTGIAELIAL 376 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~ll~~ 376 (615)
..+|+|+|||.+|+..|-.|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 3589999999999999988764
No 490
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=40.86 E-value=32 Score=42.73 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=27.4
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999998865 353 58888865
No 491
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=40.84 E-value=46 Score=30.54 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCC
Q 007156 358 FLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKG 400 (615)
Q Consensus 358 iv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~G 400 (615)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999998888652 4 5688888865
No 492
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.82 E-value=1.5e+02 Score=33.02 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=51.8
Q ss_pred HHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCC
Q 007156 344 SAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEP 423 (615)
Q Consensus 344 ~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~ 423 (615)
.|++...+...+.+++|+|.|.-.-...+.+.+ +.++.|+ .++|.+.. +
T Consensus 313 ~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~-li~~l~l-----~~~V~f~G--------~----------------- 361 (475)
T cd03813 313 RAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRE-LVESLGL-----EDNVKFTG--------F----------------- 361 (475)
T ss_pred HHHHHHHHhCCCeEEEEECCCCcChHHHHHHHH-HHHHhCC-----CCeEEEcC--------C-----------------
Confidence 333333344568899999998532233344433 2333454 24555532 1
Q ss_pred CCCHHHHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEE
Q 007156 424 VKELVDAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 424 ~~~L~e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIF 467 (615)
.++.+.+.. .|+++=.|-.. .|.--++++|+ +.+|+|.
T Consensus 362 -~~v~~~l~~--aDv~vlpS~~E-g~p~~vlEAma--~G~PVVa 399 (475)
T cd03813 362 -QNVKEYLPK--LDVLVLTSISE-GQPLVILEAMA--AGIPVVA 399 (475)
T ss_pred -ccHHHHHHh--CCEEEeCchhh-cCChHHHHHHH--cCCCEEE
Confidence 124445553 78888666544 57889999999 6889988
No 493
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=40.78 E-value=98 Score=34.37 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=46.5
Q ss_pred HHHHHHHhCCCCCCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhc---
Q 007156 342 LISAMKFLGGSLADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWA--- 418 (615)
Q Consensus 342 ll~Alr~~g~~L~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA--- 418 (615)
+..++.-....|+..|++++|.++-.-.++.++. +.|+.. ..+ |.-.... ++....++...
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~-----elGmev-------v~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYE-----DLGMEV-------VGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-----HCCCEE-------EEE---EeecCCH-HHHhhHHhhcCCce
Confidence 4455555667889999999987665556665442 357632 111 0000000 00111111100
Q ss_pred --cccCCCCCHHHHHhccCCcEEEEccC
Q 007156 419 --HEHEPVKELVDAVNAIKPTILIGTSG 444 (615)
Q Consensus 419 --~~~~~~~~L~e~V~~vkPtvLIG~S~ 444 (615)
-+..+...+++.++..+||++||-|-
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 01122246888999999999999775
No 494
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=40.78 E-value=40 Score=35.32 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=28.8
Q ss_pred CCceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCcc
Q 007156 354 ADQRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLI 402 (615)
Q Consensus 354 ~d~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi 402 (615)
...+|+|+|+|-+|+.+|-.|.+. |. +|.++|++..-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 357899999999999999888753 52 78888876553
No 495
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=40.75 E-value=1.2e+02 Score=33.14 Aligned_cols=108 Identities=13% Similarity=0.166 Sum_probs=58.6
Q ss_pred HhCCCCCCceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccCCccccCC--ccCccc-c-chhhcc-cc
Q 007156 348 FLGGSLADQRFLFLGA-GEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSKGLIVSSR--LESLQH-F-KKPWAH-EH 421 (615)
Q Consensus 348 ~~g~~L~d~riv~~GA-GsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R--~~~L~~-~-k~~fA~-~~ 421 (615)
..++.-+++||+|.|| |-.|..+++.|++ .| -+++.++++.--.... ...+.. . ...+.. +.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G-------~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RG-------YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CC-------CEEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3466778899999997 7788888888764 25 3577777643100000 000000 0 001111 22
Q ss_pred CCCCCHHHHHhcc--CCcEEEEccCCC--C---CC------CHHHHHHHHccCCCcEEE
Q 007156 422 EPVKELVDAVNAI--KPTILIGTSGQG--R---TF------TKEVVEAMASLNEKPIIF 467 (615)
Q Consensus 422 ~~~~~L~e~V~~v--kPtvLIG~S~~~--g---~F------teevv~~Ma~~~erPIIF 467 (615)
.+..++.++++.. ++|++|=+.+.. + .+ +..+++++.+..-+-+|+
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~ 179 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL 179 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE
Confidence 2234577778765 699998544321 1 11 345677776555455666
No 496
>PRK06523 short chain dehydrogenase; Provisional
Probab=40.70 E-value=1.1e+02 Score=30.24 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCCCceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 351 GSLADQRFLFLGAG-EAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 351 ~~L~d~riv~~GAG-sAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+++++++||.||. .-|..+|+.++ + .| -++++++++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~----~-~G-------~~v~~~~r~ 42 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLL----E-AG-------ARVVTTARS 42 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHH----H-CC-------CEEEEEeCC
Confidence 46888999999973 33444444443 3 35 368888774
No 497
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=40.57 E-value=35 Score=36.82 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=24.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 356 QRFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 356 ~riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQ 34 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 579999999999999977754 475 35666664
No 498
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=40.29 E-value=31 Score=40.94 Aligned_cols=106 Identities=13% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHhccCCcEEEEccCCCCCCCHHHHHHHHccCCCcEEEecCCCCC--------cCCCCHHHHhcccCCcEEEeeCCCCC
Q 007156 429 DAVNAIKPTILIGTSGQGRTFTKEVVEAMASLNEKPIIFSLSNPTS--------QSECTAEEAYTWSQGRAIFASGSPFD 500 (615)
Q Consensus 429 e~V~~vkPtvLIG~S~~~g~Fteevv~~Ma~~~erPIIFaLSNPts--------~aEctpedA~~wT~GraifASGSPF~ 500 (615)
++=+.++|+++|..++.. +.-.-|.....+-+|=|.+=.-||.. ..+-|.++..++.-. |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333456899999877743 55444444434555668888999963 234444444433210 11111134
Q ss_pred CcccCCeeeCcCCCccccccchhhHHHHHcCCcccCHHHHHHH
Q 007156 501 PFEYGDNVFVPGQANNAYIFPGLGLGLIMSGAIRVHDDMLLAA 543 (615)
Q Consensus 501 pV~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~laA 543 (615)
||..+ +.||-.=|-..+|-+--++.+...- .+.+.+-+|
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a 526 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKV 526 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 45442 5677777777777655444333322 454444444
No 499
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=40.28 E-value=79 Score=32.73 Aligned_cols=94 Identities=19% Similarity=0.253 Sum_probs=49.7
Q ss_pred CceEEEeCcChHHHHHHHH-HHHHHHHhcCCChhhhcCeEEEEccCCccccCCccCccccchhhccccCCCCCHHHHHhc
Q 007156 355 DQRFLFLGAGEAGTGIAEL-IALEISKQTNMPLEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKELVDAVNA 433 (615)
Q Consensus 355 d~riv~~GAGsAG~GIA~l-l~~~~~~~~Gls~eeArk~i~lvD~~GLi~~~R~~~L~~~k~~fA~~~~~~~~L~e~V~~ 433 (615)
..||.|+|+| +++.. .+.++.+..+. ..-+.++|++ . +....+.+.|--. .-..+++|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4689999998 33332 23333221110 1334555653 1 1122233333211 235789999998
Q ss_pred cCCcEEEEccCCCCCCCHHHHHH-HHc----cCCCcEEE
Q 007156 434 IKPTILIGTSGQGRTFTKEVVEA-MAS----LNEKPIIF 467 (615)
Q Consensus 434 vkPtvLIG~S~~~g~Fteevv~~-Ma~----~~erPIIF 467 (615)
-++|+++ ..++. .+..|++.. +.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7778877 44434 466666643 332 56788654
No 500
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=40.28 E-value=30 Score=38.38 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=20.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccC
Q 007156 357 RFLFLGAGEAGTGIAELIALEISKQTNMPLEETRKKIWLVDSK 399 (615)
Q Consensus 357 riv~~GAGsAG~GIA~ll~~~~~~~~Gls~eeArk~i~lvD~~ 399 (615)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999988887744 35 468888876
Done!