Query 007158
Match_columns 615
No_of_seqs 187 out of 1019
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 100.0 2E-108 6E-113 940.8 61.9 583 5-596 39-627 (759)
2 1ldj_A Cullin homolog 1, CUL-1 100.0 2E-105 8E-110 915.1 53.9 565 25-596 1-623 (760)
3 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 3.7E-71 1.3E-75 590.8 42.6 381 5-387 12-396 (410)
4 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 1E-65 3.6E-70 542.0 34.1 355 17-371 5-363 (364)
5 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 1.4E-63 4.8E-68 523.9 39.1 349 17-373 2-353 (354)
6 2wzk_A Cullin-5, CUL-5; UBL co 100.0 6.2E-60 2.1E-64 502.3 35.6 342 24-371 14-379 (391)
7 3dpl_C Cullin-5; ubiquitin, NE 100.0 6.9E-48 2.4E-52 406.3 23.9 223 372-596 3-235 (382)
8 2vqc_A Hypothetical 13.2 kDa p 56.9 4.4 0.00015 31.7 1.6 51 559-609 10-65 (118)
9 1sfx_A Conserved hypothetical 53.9 7.8 0.00027 31.1 2.9 39 559-597 17-55 (109)
10 1oks_A RNA polymerase alpha su 52.7 16 0.00054 25.5 3.7 45 425-469 4-48 (56)
11 3ech_A MEXR, multidrug resista 52.5 7.9 0.00027 33.1 2.9 49 559-607 34-85 (142)
12 3cuo_A Uncharacterized HTH-typ 52.4 13 0.00043 29.5 3.9 37 561-597 23-59 (99)
13 1dp3_A TRAM protein; helix-loo 50.6 5.8 0.0002 28.2 1.3 44 154-197 10-54 (55)
14 3tgn_A ADC operon repressor AD 49.0 15 0.00052 31.3 4.1 48 558-606 34-84 (146)
15 3g3z_A NMB1585, transcriptiona 48.7 11 0.00039 32.2 3.3 49 560-608 29-80 (145)
16 1fse_A GERE; helix-turn-helix 48.3 17 0.00058 27.0 3.9 36 559-596 11-46 (74)
17 4hbl_A Transcriptional regulat 47.5 11 0.00037 32.6 2.9 50 559-608 38-90 (149)
18 3hsr_A HTH-type transcriptiona 47.3 12 0.00041 31.9 3.2 49 559-607 33-84 (140)
19 3bpv_A Transcriptional regulat 47.2 14 0.00047 31.2 3.6 38 560-597 27-64 (138)
20 1xn7_A Hypothetical protein YH 46.6 13 0.00044 28.8 2.9 30 567-596 7-36 (78)
21 2cmx_A ORF F-112, F112, hypoth 46.5 8 0.00027 31.0 1.6 51 559-609 10-65 (118)
22 3cdh_A Transcriptional regulat 46.0 18 0.00062 31.2 4.2 47 560-606 41-90 (155)
23 1je8_A Nitrate/nitrite respons 44.6 22 0.00074 27.5 4.0 36 559-596 21-56 (82)
24 2frh_A SARA, staphylococcal ac 43.5 16 0.00054 30.8 3.3 49 559-607 34-87 (127)
25 3k0l_A Repressor protein; heli 43.4 17 0.00057 31.9 3.6 48 560-607 44-94 (162)
26 3nrv_A Putative transcriptiona 43.4 17 0.00058 31.1 3.6 48 559-606 37-87 (148)
27 2qww_A Transcriptional regulat 43.4 14 0.00049 31.8 3.1 46 560-605 39-87 (154)
28 2gxg_A 146AA long hypothetical 43.3 21 0.00072 30.3 4.2 46 560-606 35-83 (146)
29 2e1c_A Putative HTH-type trans 43.0 16 0.00054 32.8 3.4 53 539-595 8-60 (171)
30 2heo_A Z-DNA binding protein 1 42.9 8.8 0.0003 28.6 1.4 35 563-597 11-46 (67)
31 2fbh_A Transcriptional regulat 42.7 16 0.00055 31.0 3.3 47 560-606 35-85 (146)
32 1tbx_A ORF F-93, hypothetical 42.5 16 0.00056 29.0 3.1 39 559-597 5-47 (99)
33 1x3u_A Transcriptional regulat 42.0 24 0.00081 26.6 3.8 35 560-596 17-51 (79)
34 3bja_A Transcriptional regulat 41.9 14 0.00046 31.2 2.6 46 560-605 31-79 (139)
35 3r0a_A Putative transcriptiona 41.8 16 0.00054 30.8 3.0 48 558-605 22-74 (123)
36 2dk5_A DNA-directed RNA polyme 41.6 12 0.00041 29.9 2.0 49 556-604 14-67 (91)
37 2htj_A P fimbrial regulatory p 41.2 20 0.00067 27.5 3.2 32 566-597 4-35 (81)
38 2nnn_A Probable transcriptiona 40.8 16 0.00056 30.7 3.0 39 559-597 35-73 (140)
39 2k02_A Ferrous iron transport 40.3 15 0.00052 29.0 2.4 30 567-596 7-36 (87)
40 3eco_A MEPR; mutlidrug efflux 40.3 18 0.0006 30.6 3.1 48 559-606 28-80 (139)
41 3c57_A Two component transcrip 40.2 20 0.00068 28.6 3.2 36 559-596 27-62 (95)
42 2a61_A Transcriptional regulat 40.2 16 0.00056 31.0 2.9 38 560-597 31-68 (145)
43 3jw4_A Transcriptional regulat 40.1 13 0.00045 31.9 2.3 49 559-607 38-91 (148)
44 2fa5_A Transcriptional regulat 39.6 21 0.00071 31.1 3.6 48 560-607 47-97 (162)
45 3bj6_A Transcriptional regulat 39.5 18 0.00062 31.0 3.1 47 560-606 38-87 (152)
46 2d1h_A ST1889, 109AA long hypo 39.4 20 0.00067 28.7 3.2 39 560-598 19-58 (109)
47 3oop_A LIN2960 protein; protei 39.3 14 0.00049 31.4 2.4 49 559-607 34-85 (143)
48 3omy_A Protein TRAM; DNA bindi 39.3 15 0.00052 25.7 1.9 41 152-193 9-49 (52)
49 1jgs_A Multiple antibiotic res 39.2 17 0.00058 30.6 2.8 47 560-606 32-81 (138)
50 3ulq_B Transcriptional regulat 38.6 28 0.00096 27.5 3.8 40 555-596 25-64 (90)
51 3bdd_A Regulatory protein MARR 38.6 18 0.00061 30.6 2.9 39 559-597 28-66 (142)
52 2bv6_A MGRA, HTH-type transcri 38.5 16 0.00054 31.0 2.5 47 560-606 35-84 (142)
53 2p7v_B Sigma-70, RNA polymeras 38.3 34 0.0012 25.0 4.1 37 560-596 6-45 (68)
54 2pex_A Transcriptional regulat 38.1 20 0.00068 30.9 3.2 47 560-606 45-94 (153)
55 3cjn_A Transcriptional regulat 38.1 20 0.00067 31.3 3.2 47 560-606 50-99 (162)
56 3t72_q RNA polymerase sigma fa 38.0 27 0.00094 28.2 3.7 37 560-596 20-59 (99)
57 2fbi_A Probable transcriptiona 38.0 17 0.00057 30.7 2.6 38 560-597 34-71 (142)
58 3bro_A Transcriptional regulat 37.9 24 0.00081 29.7 3.6 47 560-606 32-83 (141)
59 1qgp_A Protein (double strande 37.8 16 0.00055 28.0 2.2 33 565-597 17-52 (77)
60 1oyi_A Double-stranded RNA-bin 37.8 24 0.00084 27.5 3.2 32 565-597 20-51 (82)
61 3kp7_A Transcriptional regulat 37.8 15 0.00052 31.6 2.3 47 559-606 35-84 (151)
62 2hr3_A Probable transcriptiona 37.6 20 0.0007 30.5 3.1 39 559-597 32-71 (147)
63 2lnb_A Z-DNA-binding protein 1 37.4 9.7 0.00033 29.3 0.8 34 564-597 21-55 (80)
64 1u2w_A CADC repressor, cadmium 36.8 21 0.0007 29.9 2.9 45 561-605 41-88 (122)
65 3chm_A COP9 signalosome comple 36.7 15 0.00053 33.0 2.2 44 563-606 96-144 (169)
66 1tty_A Sigma-A, RNA polymerase 36.6 34 0.0012 26.6 4.0 37 560-596 19-58 (87)
67 2eth_A Transcriptional regulat 36.5 20 0.00069 31.0 2.9 38 560-597 42-79 (154)
68 2rdp_A Putative transcriptiona 36.4 20 0.00068 30.7 2.9 47 560-606 40-89 (150)
69 3e6m_A MARR family transcripti 36.3 16 0.00054 32.0 2.2 48 560-607 51-101 (161)
70 1lj9_A Transcriptional regulat 36.1 17 0.00057 30.9 2.3 47 560-606 27-76 (144)
71 1ub9_A Hypothetical protein PH 36.0 18 0.00061 28.6 2.3 37 561-597 15-51 (100)
72 2p5k_A Arginine repressor; DNA 35.8 28 0.00095 25.0 3.2 40 564-603 7-51 (64)
73 3jth_A Transcription activator 34.8 28 0.00097 27.5 3.4 43 561-604 22-67 (98)
74 1s3j_A YUSO protein; structura 34.8 17 0.00057 31.4 2.1 48 559-606 34-84 (155)
75 2nyx_A Probable transcriptiona 34.6 19 0.00064 31.8 2.4 47 559-605 42-91 (168)
76 2fu4_A Ferric uptake regulatio 33.9 33 0.0011 26.2 3.5 39 558-596 13-58 (83)
77 1ku3_A Sigma factor SIGA; heli 33.7 38 0.0013 25.1 3.8 37 560-596 11-50 (73)
78 2x48_A CAG38821; archeal virus 33.4 53 0.0018 22.6 4.3 22 575-596 30-51 (55)
79 2w25_A Probable transcriptiona 33.4 30 0.001 29.9 3.6 37 560-596 5-41 (150)
80 1tc3_C Protein (TC3 transposas 33.4 41 0.0014 22.0 3.6 30 566-597 13-42 (51)
81 2pn6_A ST1022, 150AA long hypo 33.4 37 0.0013 29.2 4.2 36 561-596 2-37 (150)
82 3s2w_A Transcriptional regulat 33.2 17 0.00057 31.7 1.8 47 560-606 48-97 (159)
83 3deu_A Transcriptional regulat 32.9 26 0.0009 30.9 3.1 48 560-607 51-102 (166)
84 3boq_A Transcriptional regulat 32.7 25 0.00085 30.5 2.9 47 560-606 45-95 (160)
85 1y0u_A Arsenical resistance op 32.4 31 0.0011 27.2 3.2 35 561-597 30-64 (96)
86 3f3x_A Transcriptional regulat 31.6 28 0.00095 29.5 3.0 47 559-606 34-83 (144)
87 3k69_A Putative transcription 31.5 35 0.0012 30.2 3.7 34 564-597 16-49 (162)
88 3pqk_A Biofilm growth-associat 31.3 40 0.0014 26.9 3.7 44 561-605 22-68 (102)
89 1r1u_A CZRA, repressor protein 31.3 33 0.0011 27.7 3.2 36 561-597 25-60 (106)
90 1z91_A Organic hydroperoxide r 31.1 21 0.00073 30.3 2.1 48 560-607 38-88 (147)
91 1ku9_A Hypothetical protein MJ 31.0 36 0.0012 28.8 3.7 47 560-606 24-74 (152)
92 2cfx_A HTH-type transcriptiona 30.3 38 0.0013 29.1 3.6 38 560-597 3-40 (144)
93 2ia0_A Putative HTH-type trans 30.0 34 0.0012 30.5 3.4 41 556-596 11-51 (171)
94 3fm5_A Transcriptional regulat 29.9 30 0.001 29.6 3.0 48 560-607 37-88 (150)
95 1qbj_A Protein (double-strande 29.0 35 0.0012 26.4 2.8 34 564-597 12-48 (81)
96 2dbb_A Putative HTH-type trans 28.9 40 0.0014 29.1 3.6 37 560-596 7-43 (151)
97 2cg4_A Regulatory protein ASNC 28.6 40 0.0014 29.2 3.5 37 560-596 6-42 (152)
98 1jko_C HIN recombinase, DNA-in 28.4 36 0.0012 22.7 2.6 31 567-599 14-44 (52)
99 2oqg_A Possible transcriptiona 28.2 35 0.0012 27.7 2.9 36 561-597 20-55 (114)
100 2rnj_A Response regulator prot 28.2 25 0.00085 27.6 1.9 35 560-596 30-64 (91)
101 2cyy_A Putative HTH-type trans 28.1 43 0.0015 29.0 3.6 37 560-596 5-41 (151)
102 1i1g_A Transcriptional regulat 28.0 33 0.0011 29.2 2.8 36 561-596 3-38 (141)
103 2wte_A CSA3; antiviral protein 28.0 32 0.0011 32.9 2.9 39 559-597 149-187 (244)
104 2jpc_A SSRB; DNA binding prote 27.8 34 0.0012 24.2 2.4 30 565-596 4-33 (61)
105 2fxa_A Protease production reg 27.2 30 0.001 31.9 2.6 48 560-607 46-96 (207)
106 1hsj_A Fusion protein consisti 27.1 42 0.0014 35.2 4.0 53 558-610 400-457 (487)
107 3nqo_A MARR-family transcripti 26.2 35 0.0012 30.8 2.7 48 560-607 39-91 (189)
108 2pg4_A Uncharacterized protein 26.0 49 0.0017 25.9 3.3 34 563-596 16-51 (95)
109 1r5q_A KAI A, circadian oscill 25.9 2.1E+02 0.0072 22.7 6.6 47 337-383 12-58 (102)
110 2lkp_A Transcriptional regulat 25.2 48 0.0016 27.2 3.2 36 561-597 31-66 (119)
111 1bby_A RAP30; average structur 25.1 75 0.0026 23.8 3.8 38 563-600 9-46 (69)
112 4b8x_A SCO5413, possible MARR- 25.0 37 0.0013 29.2 2.6 49 560-608 33-86 (147)
113 4aik_A Transcriptional regulat 24.8 60 0.0021 28.0 4.0 49 559-607 28-80 (151)
114 2jt1_A PEFI protein; solution 24.7 36 0.0012 26.2 2.1 31 566-596 8-44 (77)
115 4fx0_A Probable transcriptiona 24.5 57 0.0019 28.1 3.7 44 560-603 31-82 (148)
116 3mhs_B Protein SUS1; multi-pro 24.5 1.8E+02 0.0061 23.3 6.3 56 26-82 35-91 (96)
117 2p5v_A Transcriptional regulat 24.0 55 0.0019 28.6 3.6 37 560-596 8-44 (162)
118 1p4w_A RCSB; solution structur 24.0 53 0.0018 26.4 3.1 36 559-596 34-69 (99)
119 2zkz_A Transcriptional repress 23.9 39 0.0013 27.0 2.3 37 561-597 26-62 (99)
120 1p6r_A Penicillinase repressor 23.6 53 0.0018 24.9 3.0 38 559-596 6-47 (82)
121 3u2r_A Regulatory protein MARR 23.3 39 0.0013 29.6 2.4 47 560-606 44-95 (168)
122 2kko_A Possible transcriptiona 23.2 36 0.0012 27.7 2.0 34 563-597 26-59 (108)
123 2v79_A DNA replication protein 23.2 55 0.0019 28.0 3.3 42 556-597 26-72 (135)
124 2o8x_A Probable RNA polymerase 23.0 85 0.0029 22.5 4.0 35 560-596 16-51 (70)
125 1p4x_A Staphylococcal accessor 22.7 51 0.0017 31.5 3.3 49 559-607 31-84 (250)
126 3hug_A RNA polymerase sigma fa 22.5 81 0.0028 24.5 4.0 35 560-596 38-73 (92)
127 3on0_A Protein TRAM; DNA bindi 21.8 42 0.0014 28.1 2.0 44 152-196 9-52 (127)
128 2obp_A Putative DNA-binding pr 21.8 57 0.002 26.2 2.8 38 559-596 13-56 (96)
129 1ylf_A RRF2 family protein; st 21.5 63 0.0022 28.0 3.4 34 564-597 18-51 (149)
130 2l02_A Uncharacterized protein 21.2 61 0.0021 25.2 2.7 29 566-594 12-40 (82)
131 4a0z_A Transcription factor FA 20.8 61 0.0021 29.6 3.2 32 563-594 13-44 (190)
132 1p4x_A Staphylococcal accessor 20.7 63 0.0022 30.8 3.5 51 559-609 155-210 (250)
133 3t8r_A Staphylococcus aureus C 20.6 72 0.0025 27.4 3.5 32 566-597 17-49 (143)
134 2fbk_A Transcriptional regulat 20.5 50 0.0017 29.3 2.6 48 560-607 67-120 (181)
135 1bja_A Transcription regulator 20.3 74 0.0025 25.5 3.2 37 558-594 12-49 (95)
136 3lwf_A LIN1550 protein, putati 20.3 85 0.0029 27.6 4.0 34 564-597 31-65 (159)
137 3i4p_A Transcriptional regulat 20.0 90 0.0031 27.3 4.1 33 564-596 5-37 (162)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.8e-108 Score=940.82 Aligned_cols=583 Identities=37% Similarity=0.662 Sum_probs=553.3
Q ss_pred ccCccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHH
Q 007158 5 KKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEIS 84 (615)
Q Consensus 5 ~~~~~~i~~~~~~~~~~~~~f~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~~i~ 84 (615)
++|+++||||++++.+|+++|++.|+.|++||+.|+.+++.+.+|+++|+.||++|++++|++||+++++.+.+|+..++
T Consensus 39 ~~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~ 118 (759)
T 2hye_C 39 GSKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQI 118 (759)
T ss_dssp --CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999987888899999999999999999999888999999999999999999999999999999999999988
Q ss_pred HHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-CccHhHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 007158 85 KSIEA--AQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH-KTPVHELGLNLWRDNIVRSNKIQTRLLNTLLE 161 (615)
Q Consensus 85 ~~l~~--~~~~~~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~ 161 (615)
+++.. ..++.+|+.|..+|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+..+.+.+++++++++
T Consensus 119 ~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 198 (759)
T 2hye_C 119 LPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILL 198 (759)
T ss_dssp HHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHH
Confidence 88754 2335899999999999999999999999999999999876 78999999999999999966799999999999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhh
Q 007158 162 LVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTH 241 (615)
Q Consensus 162 ~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~ 241 (615)
+|+++|+|+.+|+++++++++||.+++ +|.+.||++||++|.+||+.+++.|+++.++++|+++|+.++++|.+||..
T Consensus 199 lI~~eR~Ge~id~~llk~vi~ml~~L~--vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~ 276 (759)
T 2hye_C 199 LIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVIT 276 (759)
T ss_dssp HHHTTTTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999996 999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhc
Q 007158 242 YLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVT 321 (615)
Q Consensus 242 ~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~ 321 (615)
||+++|.++|.++|+++||.+|++.|++ +|+..||++++.++|++||+|+++++++++.++..|++||++.|.+++.
T Consensus 277 yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~ 353 (759)
T 2hye_C 277 YLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVI 353 (759)
T ss_dssp TSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhc
Confidence 9999999999999999999999999985 4899999999999999999999999999999999999999999999997
Q ss_pred CcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccC-CCcHHHHHHHHHHHhhcCCCCCChhHHH
Q 007158 322 DPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLN-PRSPEFISLFVDDKLRKGLKGVSEEDVE 400 (615)
Q Consensus 322 ~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~~-~~~~e~La~y~D~~lk~~~~~~~~~~~e 400 (615)
+... +.+||+.|+++|++|+.++.+||++|+.|.+++++||+.|+|.+ .++||+||+|||.+||+|.++.+++|++
T Consensus 354 ~~~~---~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e 430 (759)
T 2hye_C 354 NPEK---DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELE 430 (759)
T ss_dssp CGGG---TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHH
T ss_pred Cccc---HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 6532 36899999999999999999999999999999999999999974 6899999999999999998888899999
Q ss_pred HHHHHHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHHHhccchhhHhHHHhhhhHHhhHHHHHHHhh
Q 007158 401 TILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYA 480 (615)
Q Consensus 401 ~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~ 480 (615)
..+++++.+|+|+++||+|+.+|+++||+|||.+++++.|.|+.||++||.+||.+||++|++||+|+..|++++..|++
T Consensus 431 ~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~ 510 (759)
T 2hye_C 431 RTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQ 510 (759)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCC--CCCccEEEEEeccCCCCCCCCCCCCCcHhHHHHHHHHHHHHhcCCCCcceeeccCccceEEEEeeCCCcEEEE
Q 007158 481 SHPEL--GDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHEL 558 (615)
Q Consensus 481 ~~~~~--~~~~~~~~~vls~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~lg~~~l~~~~~~g~~~~l 558 (615)
+.... +.+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++ +++++
T Consensus 511 ~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~l 589 (759)
T 2hye_C 511 HMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKE-GKKEF 589 (759)
T ss_dssp HHHTTCCCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSS-CCCEE
T ss_pred HHhcccCCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCC-ceEEE
Confidence 76432 3468999999999999998888999999999999999999999999999999999999999999987 78999
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+||++||+||++||+.++||++||++.|||+.+.|...
T Consensus 590 ~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~ 627 (759)
T 2hye_C 590 QVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRT 627 (759)
T ss_dssp EEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHH
T ss_pred EEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999999999888744
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=2.4e-105 Score=915.09 Aligned_cols=565 Identities=33% Similarity=0.597 Sum_probs=532.6
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHhhcCC---------------------------chHHHHHHHHHHH
Q 007158 25 AEKTWKILEHAIHEIYNHNA-SGLSFEELYRNAYNMVLHK---------------------------FGEKLYSGLVSTM 76 (615)
Q Consensus 25 f~~~W~~l~~~i~~I~~~~~-~~~s~~~lY~~vy~lc~~~---------------------------~~e~LY~~l~~~i 76 (615)
|++.|+.|++||+.|+.+.+ +..+||++|+.||++|+++ +|++||+++++.+
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 58999999999999999732 3345999999999999986 7899999999999
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC------CccHhHHHHHHHHHHHhcchh
Q 007158 77 TLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH------KTPVHELGLNLWRDNIVRSNK 150 (615)
Q Consensus 77 ~~~~~~i~~~l~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~------~~~i~~l~l~~f~~~v~~~~~ 150 (615)
.+|+..++..+....++.+|..|..+|++|+.++.+|+++|+||||+||.+.. .++|+++|+.+|+++||. +
T Consensus 81 ~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~--~ 158 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR--P 158 (760)
T ss_dssp HHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT--T
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHHHHH--H
Confidence 99999987766556678999999999999999999999999999999999864 689999999999999999 8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhC------------cccchhhchhhHHHHHHHHHHHHHHHhHhc
Q 007158 151 IQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG------------PSVYQEDFEKPFLEVSAEFYKVESQKFIEC 218 (615)
Q Consensus 151 l~~~l~~~ll~~I~~~R~g~~i~~~~lk~ii~~l~~lg------------~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~ 218 (615)
+.+++.++++++|+++|+|+.+|+.+|+++++||+++| ..+|.+.||++||++|.+||+.+++.|+++
T Consensus 159 l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l~~ 238 (760)
T 1ldj_A 159 LNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQ 238 (760)
T ss_dssp TTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999986 357999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCC
Q 007158 219 CDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVP 298 (615)
Q Consensus 219 ~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~ 298 (615)
.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+ +|+..||++++.++|++||+|+++++
T Consensus 239 ~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~~rv~ 314 (760)
T 1ldj_A 239 NPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLVSRIQ 314 (760)
T ss_dssp SCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHhCcCc
Confidence 99999999999999999999999999999999999999999999999995 69999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHhhhhhcCccc--CCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccC----
Q 007158 299 SGLLTIREVMTSHLRETGKQLVTDPER--LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLN---- 372 (615)
Q Consensus 299 ~~~~~l~~~~~~~i~~~g~~~~~~~~~--~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~~---- 372 (615)
+|++.|+..|++||++.|.+++.+... ..++.+||+.|+++|++|+.++..||++|+.|.+++++||+.|+|.+
T Consensus 315 ~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~ 394 (760)
T 1ldj_A 315 DGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTK 394 (760)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcccc
Confidence 999999999999999999999875422 24789999999999999999999999999999999999999999975
Q ss_pred -----CCcHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007158 373 -----PRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIV 447 (615)
Q Consensus 373 -----~~~~e~La~y~D~~lk~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~s~~~~~E~~~i~ 447 (615)
.++||+||+|||.+||+|.++.++++++..+++++.||+|+++||+|+.+|+++||+|||++++++.+.|+.||+
T Consensus 395 ~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~ 474 (760)
T 1ldj_A 395 MAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMIS 474 (760)
T ss_dssp HHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHH
T ss_pred ccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 689999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccchhhHhHHHhhhhHHhhHHHHHHHhhhcCC-CCCCccEEEEEeccCCCCCCCCCCCCCcHhHHHHHHHHHHHH
Q 007158 448 KLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPE-LGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYY 526 (615)
Q Consensus 448 ~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~-~~~~~~~~~~vls~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y 526 (615)
+||.+||.+||+||++||+|+..|++++..|+++..+ ...+++|+|.|||+++||.++..++.+|++|+.+++.|++||
T Consensus 475 ~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY 554 (760)
T 1ldj_A 475 KLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFY 554 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHT
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987654 334689999999999999988889999999999999999999
Q ss_pred hcCCCCcceeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 527 LGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 527 ~~~~~~R~L~w~~~lg~~~l~~~~~~g~~~~l~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
..+|+||+|+|.|++|+|+|+++|++ ++++|+||++||+||++||+.++||++||++.|||+.+.|...
T Consensus 555 ~~~~~~RkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~ 623 (760)
T 1ldj_A 555 ASRHSGRKLTWLYQLSKGELVTNCFK-NRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQV 623 (760)
T ss_dssp TTTCTTCCEEECGGGCCCEEEESSSS-SCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHH
T ss_pred HHhCCCCeEEEecccccEEEEEEECC-ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999987 7899999999999999999999999999999999999988744
No 3
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.7e-71 Score=590.80 Aligned_cols=381 Identities=50% Similarity=0.836 Sum_probs=344.2
Q ss_pred ccCccccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH-HH
Q 007158 5 KKRNFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLK-EI 83 (615)
Q Consensus 5 ~~~~~~i~~~~~~~~~~~~~f~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~-~i 83 (615)
++|+++|||| ++++++++|++.|+.|++||+.|+.+.+++.|||++|+.||++|++++|++||+++++.+.+|+. .+
T Consensus 12 ~~~k~~i~~~--~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v 89 (410)
T 4ap2_B 12 KDTKMRIRAF--PMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKV 89 (410)
T ss_dssp -----CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCeeeeeCC--CCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4488999999 35799999999999999999999999999999999999999999999999999999999999998 69
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccHhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 007158 84 SKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELV 163 (615)
Q Consensus 84 ~~~l~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~~I 163 (615)
.+.+.+..++.+|+.|.++|++|+.++.+|+++|+||||+|+.+++.++|+++|+.+|+++|+..+++.++++++++++|
T Consensus 90 ~~~l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI 169 (410)
T 4ap2_B 90 REDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMI 169 (410)
T ss_dssp HHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99988777778999999999999999999999999999999999889999999999999999987789999999999999
Q ss_pred HHHhcCCCCChHHHHHHHHHHHhhCc---ccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHh
Q 007158 164 HRERTGEVINRGLMRNIIKMLMDLGP---SVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVT 240 (615)
Q Consensus 164 ~~~R~g~~i~~~~lk~ii~~l~~lg~---~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~ 240 (615)
+++|+|+.+|+.+|+++++||+++|. .+|.+.||++||++|.+||+.+++.|+++.++++||++|+.++++|.+||.
T Consensus 170 ~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~ 249 (410)
T 4ap2_B 170 ARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVM 249 (410)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999983 579999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhh
Q 007158 241 HYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLV 320 (615)
Q Consensus 241 ~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~ 320 (615)
.||+++|.++|.++|+++||.+|++.|++++++||..||++++.++|++||+|++++++|++.|+..|++||++.|.+++
T Consensus 250 ~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv 329 (410)
T 4ap2_B 250 HCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV 329 (410)
T ss_dssp HTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccCCCcHHHHHHHHHHHh
Q 007158 321 TDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKL 387 (615)
Q Consensus 321 ~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~~~~~~e~La~y~D~~l 387 (615)
.+.....+|.+||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+.+.||+||+|||..-
T Consensus 330 ~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~~spElla~y~D~~~ 396 (410)
T 4ap2_B 330 SEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNSRSPEYLAENLYFQS 396 (410)
T ss_dssp HC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC---------------
T ss_pred hccccccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHccCcc
Confidence 8876556789999999999999999999999999999999999999999999899999999999863
No 4
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=1e-65 Score=542.02 Aligned_cols=355 Identities=52% Similarity=0.861 Sum_probs=288.6
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH-HHHHHHHhccchHH
Q 007158 17 RVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLK-EISKSIEAAQGGSF 95 (615)
Q Consensus 17 ~~~~~~~~f~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~-~i~~~l~~~~~~~~ 95 (615)
++++|+.+|++.|+.|++||+.|+.+.+++.|||++|+.||++|++++|++||+++++.+.+|+. .+.+.+.+..++.+
T Consensus 5 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~~~~ 84 (364)
T 4eoz_B 5 PMTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNF 84 (364)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSH
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45678899999999999999999999988999999999999999999999999999999999999 69999887777789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCccHhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCChH
Q 007158 96 LEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRG 175 (615)
Q Consensus 96 L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~~I~~~R~g~~i~~~ 175 (615)
|+.|.++|++|+.++.+|+++|+||||+|+.+++.++|+++|+.+|+++|+.++++.++++++++++|+++|+|+.+|+.
T Consensus 85 L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~ 164 (364)
T 4eoz_B 85 LQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRG 164 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 99999999999999999999999999999999889999999999999999987789999999999999999999999999
Q ss_pred HHHHHHHHHHhhC---cccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q 007158 176 LMRNIIKMLMDLG---PSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKIT 252 (615)
Q Consensus 176 ~lk~ii~~l~~lg---~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~~l~ 252 (615)
+|+++++||.++| ..+|.+.||++||++|.+||+.+++.|+++.++++||++|+.++++|.+||..||+++|.++|.
T Consensus 165 lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~ 244 (364)
T 4eoz_B 165 AIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIV 244 (364)
T ss_dssp HHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHH
Confidence 9999999999998 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhcCcccCCCcHHH
Q 007158 253 NVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEF 332 (615)
Q Consensus 253 ~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 332 (615)
++|+++||.+|++.|++++++|+..||++++.++|++||+|++++++|++.|+..|++||++.|.+++.+.....+|.+|
T Consensus 245 ~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~~~ 324 (364)
T 4eoz_B 245 KVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPVDY 324 (364)
T ss_dssp HHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccccCChHHH
Confidence 99999999999999998777899999999999999999999999999999999999999999999999887665678899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhcc
Q 007158 333 VQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINL 371 (615)
Q Consensus 333 i~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~ 371 (615)
|+.|+++|++|+.++.+||++|+.|..++++||+.|+|.
T Consensus 325 V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~ 363 (364)
T 4eoz_B 325 RQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNL 363 (364)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999996
No 5
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=1.4e-63 Score=523.86 Aligned_cols=349 Identities=33% Similarity=0.617 Sum_probs=325.7
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc--cchH
Q 007158 17 RVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKEISKSIEAA--QGGS 94 (615)
Q Consensus 17 ~~~~~~~~f~~~W~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~~i~~~l~~~--~~~~ 94 (615)
|+.+|++||++.|+.|++||++|+.+.+++.||+++|+.||++|++++|++||+++++.+.+|+...+..+.+. .++.
T Consensus 2 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 2 MPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CCCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence 45677788999999999999999999999999999999999999999999999999999999998855444332 2358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCC-CccHhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCCCC
Q 007158 95 FLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH-KTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVIN 173 (615)
Q Consensus 95 ~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~~I~~~R~g~~i~ 173 (615)
+|+.|.++|++|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++|+.++++.++++++++++|+++|+|+.+|
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999999999999999999999876 69999999999999999877899999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHH
Q 007158 174 RGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITN 253 (615)
Q Consensus 174 ~~~lk~ii~~l~~lg~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~~l~~ 253 (615)
+++|+++++||.+++ +|.+.||++||++|.+||+.+++.|+++.++++||++|+.++++|.+||..||+++|.+++.+
T Consensus 162 ~~lik~~i~ml~~L~--vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~ 239 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQ--IYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIA 239 (354)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 999999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhcCcccCCCcHHHH
Q 007158 254 VVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFV 333 (615)
Q Consensus 254 ~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i 333 (615)
+|+++||.+|++.|+ .+|+..||++++.++|++||+|++++++|++.|+..|++||++.|.+++.+.. ++.+||
T Consensus 240 ~~e~~LI~~h~~~ll---~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~---~~~~~V 313 (354)
T 4a64_A 240 TVEKQLLGEHLTAIL---QKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE---KDKTMR 313 (354)
T ss_dssp HHHHHHTGGGHHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCC---SSSCHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCcc---chHHHH
Confidence 999999999999998 47999999999999999999999999999999999999999999999997653 457899
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccCC
Q 007158 334 QRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNP 373 (615)
Q Consensus 334 ~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~~~ 373 (615)
+.|+++|++|+.++.+||++|+.|.+++++||+.|+|.++
T Consensus 314 ~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 314 QELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999753
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=6.2e-60 Score=502.32 Aligned_cols=342 Identities=19% Similarity=0.401 Sum_probs=319.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHH
Q 007158 24 YAEKTWKILEHAIHEIYNHNA-SGLSFEELYRNAYNMVLH--KFGEKLYSGLVSTMTLHLKEISKSIEAAQ-GGSFLEEL 99 (615)
Q Consensus 24 ~f~~~W~~l~~~i~~I~~~~~-~~~s~~~lY~~vy~lc~~--~~~e~LY~~l~~~i~~~~~~i~~~l~~~~-~~~~L~~~ 99 (615)
+|+++|+.|++||++|+.+.+ ++.+||++|+.||++|++ ++|++||+++++.+.+|+..+...+.... ++.+|+.|
T Consensus 14 ~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~~e~~L~~~ 93 (391)
T 2wzk_A 14 QFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQDDTALLKAY 93 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 399999999999999999754 445799999999999986 68999999999999999999887775543 46899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCC--------CCccHhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcCCC
Q 007158 100 NRKWNDHNKALQMIRDILMYMDRTYIPST--------HKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEV 171 (615)
Q Consensus 100 ~~~W~~y~~~~~~l~~vf~YLdr~yv~~~--------~~~~i~~l~l~~f~~~v~~~~~l~~~l~~~ll~~I~~~R~g~~ 171 (615)
..+|++|+.++.+|+++|+||||+||.+. +.++|+++|+.+|+++|+. ++.++++++++.+|.++|+|+.
T Consensus 94 ~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~Ge~ 171 (391)
T 2wzk_A 94 IVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERLGEA 171 (391)
T ss_dssp HHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999653 3569999999999999998 8999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhC------cccchhhchhhHHHHHHHHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhcCC-
Q 007158 172 INRGLMRNIIKMLMDLG------PSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLD- 244 (615)
Q Consensus 172 i~~~~lk~ii~~l~~lg------~~~Y~~~FE~~~l~~t~~yY~~~s~~~i~~~~~~~Yl~~v~~~l~~E~~r~~~~l~- 244 (615)
+|+++|+++++||+++| ..+|.+.||++||++|.+||+.+++.|+++.++++||++|+.++++|.+||..||+
T Consensus 172 id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~ 251 (391)
T 2wzk_A 172 FDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLET 251 (391)
T ss_dssp CCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999997 46899999999999999999999999999999999999999999999999999999
Q ss_pred ---hhhHHHHHHHHHHHHHHhhhHHHHhcCchhhHHhhccCcHHHHHHHHHHhccCCCChHhHHHHHHHHHHHHhhhhhc
Q 007158 245 ---AKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVT 321 (615)
Q Consensus 245 ---~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~l~~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~ 321 (615)
++|.++|.++|+++||.+|.+.|++ |+..||++++.++|++||+|++++++|++.|+..|++||++.|.+++.
T Consensus 252 ~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~ 327 (391)
T 2wzk_A 252 RRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMV 327 (391)
T ss_dssp TTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999973 799999999999999999999999999999999999999999999875
Q ss_pred Cccc--CCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhcc
Q 007158 322 DPER--LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINL 371 (615)
Q Consensus 322 ~~~~--~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~ 371 (615)
.... ..+|..||+.|+++|++|+.++..||++|+.|.+++++||+.|+|.
T Consensus 328 ~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~ 379 (391)
T 2wzk_A 328 AAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVND 379 (391)
T ss_dssp HHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 4322 2478999999999999999999999999999999999999999996
No 7
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=6.9e-48 Score=406.35 Aligned_cols=223 Identities=28% Similarity=0.529 Sum_probs=209.0
Q ss_pred CCCcHHHHHHHHHHHhhcCC--CCCChhHHHHHHHHHhhhhccccchHHHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007158 372 NPRSPEFISLFVDDKLRKGL--KGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKL 449 (615)
Q Consensus 372 ~~~~~e~La~y~D~~lk~~~--~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~L~~RLL~~~s~~~~~E~~~i~~L 449 (615)
..+.||+||+|||.+||+|. ++.++++++..|++++.+|+|+++||+|+.+|+++||+|||++++.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35889999999999999983 6788999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccc--hhhHhHHHhhhhHHhhHHHHHHHhhhcCCCC---CCccEEEEEeccCCCCCC-CCCCCCCcHhHHHHHHHHH
Q 007158 450 KTECGY--QFTSKLEGMFTDMKTSQDTMHEFYASHPELG---DSRTLVVQVLTTGSWPTQ-PSVTCNLPAEMSALCEKFR 523 (615)
Q Consensus 450 k~~~G~--~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~---~~~~~~~~vls~~~WP~~-~~~~~~lP~~l~~~~~~f~ 523 (615)
| +||. +||++|++||+||..|++++..|++....+. .+++|+|.|||+++||.+ +..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9996 9999999999999999999999999875432 258999999999999987 4679999999999999999
Q ss_pred HHHhcCCCCcceeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCC--CCccHHHHHHhcCCChhhhhhh
Q 007158 524 SYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 524 ~~Y~~~~~~R~L~w~~~lg~~~l~~~~~~g~~~~l~vs~~Qa~iLl~Fn~~--~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+||..+|+||+|+|.|++|+|+|++++++ ++++|+||++||+||++||+. ++||++||++.|||+.+.|...
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~ 235 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEV-GQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRT 235 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSS-CEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCC-ceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999999999999988 899999999999999999985 8999999999999999988754
No 8
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=56.92 E-value=4.4 Score=31.75 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=39.9
Q ss_pred EecHHHHHHHH--hhhCCCCccHHHHHHhcCCChhhhh-hhhcccccc--CCCCCC
Q 007158 559 NVSTYQMCVLM--LFNNADRLSYQGNRAGNRDSCFRLE-KVPAISGLC--EGEECS 609 (615)
Q Consensus 559 ~vs~~Qa~iLl--~Fn~~~~~t~~ei~~~t~~~~~~l~-~~~~~~~l~--~~~~~~ 609 (615)
+++.|||+-++ ......++|+++|.....+|.+.-- ..-++..+| ++++|.
T Consensus 10 tlnsy~maeimykil~~k~e~sledilaqfeis~~sayniqr~l~~ice~hpdece 65 (118)
T 2vqc_A 10 TLNSYKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHSEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCTTTEE
T ss_pred HHhHHHHHHHHHHHHHHcCcccHHHHHHHheeccchHhHHHHHHHHHHhcCCchhh
Confidence 56788988664 3456789999999999999987765 335788899 778874
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=53.86 E-value=7.8 Score=31.15 Aligned_cols=39 Identities=5% Similarity=-0.107 Sum_probs=33.4
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.++..|..||..+...+.+|+.+|++.+|++...+-.+.
T Consensus 17 ~l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 357889999988877778999999999999999887553
No 10
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=52.67 E-value=16 Score=25.54 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHHHhccchhhHhHHHhhhhHH
Q 007158 425 QHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMK 469 (615)
Q Consensus 425 ~~L~~RLL~~~s~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~ 469 (615)
+-+.+|++.......+.-..|+..|+..-|........+|++-+-
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 346788887666677888889999998888888888888887664
No 11
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=52.52 E-value=7.9 Score=33.12 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=35.8
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
.+|+.|..||......+++|..+|++.+|+++..+-.+. --.|++.+..
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 478899999999988889999999999999998887553 3345665544
No 12
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=52.38 E-value=13 Score=29.49 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=31.9
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++.|..||..+.+++.+|+.||++.+|++...+-.+.
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l 59 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHL 59 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 5678888988888778999999999999999887554
No 13
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=50.61 E-value=5.8 Score=28.18 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHhhCcccchhhch
Q 007158 154 RLLNTLLELVHRERTGEVINR-GLMRNIIKMLMDLGPSVYQEDFE 197 (615)
Q Consensus 154 ~l~~~ll~~I~~~R~g~~i~~-~~lk~ii~~l~~lg~~~Y~~~FE 197 (615)
++.+.+-+++.+.|...+-+. --+.++..||.+||..+|+-..|
T Consensus 10 ~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGLrVYe~q~E 54 (55)
T 1dp3_A 10 EIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQME 54 (55)
T ss_dssp THHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTTSHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhHHHHHHhhc
Confidence 344555566666665443211 12568899999999888876544
No 14
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=49.03 E-value=15 Score=31.31 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=38.6
Q ss_pred EEecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 558 LNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 558 l~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+.+|+.|..||.....++ +|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEec
Confidence 457899999999999888 999999999999999988554 334566543
No 15
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=48.74 E-value=11 Score=32.17 Aligned_cols=49 Identities=16% Similarity=-0.002 Sum_probs=38.7
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEEC 608 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~~ 608 (615)
+|+.|..||......+++|..+|++.+|+++..+-.+. --.|++.+..+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccC
Confidence 58899999998887778999999999999999887553 33456655443
No 16
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=48.32 E-value=17 Score=26.96 Aligned_cols=36 Identities=8% Similarity=-0.113 Sum_probs=29.7
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.+|.-|..|+.++ ..+.|..||++.+|+|...+...
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~ 46 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNH 46 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHH
Confidence 4677888888777 45679999999999999988754
No 17
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=47.52 E-value=11 Score=32.63 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=38.6
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEEC 608 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~~ 608 (615)
.+|+.|..||.....++++|..+|++.+++++..+-.+. --.|++.+..+
T Consensus 38 ~lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~ 90 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQ 90 (149)
T ss_dssp TCCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCC
Confidence 367899999998888889999999999999999888554 33467665543
No 18
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=47.27 E-value=12 Score=31.91 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=39.3
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
.+|+.|..||......+++|..+|++.+++++..+-.+. --.|++.+..
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 467899999999988889999999999999999887554 3345665443
No 19
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=47.20 E-value=14 Score=31.16 Aligned_cols=38 Identities=5% Similarity=-0.046 Sum_probs=33.5
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
+++.|..||.....++++|..+|++.+|++...+-.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l 64 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTL 64 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 57889999988888889999999999999999887553
No 20
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=46.63 E-value=13 Score=28.78 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=26.3
Q ss_pred HHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 567 VLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 567 iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
|+...+++..+|++||++.+++|+..+...
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrd 36 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAM 36 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 667778889999999999999999998844
No 21
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=46.48 E-value=8 Score=30.96 Aligned_cols=51 Identities=20% Similarity=0.406 Sum_probs=39.4
Q ss_pred EecHHHHHHHH--hhhCCCCccHHHHHHhcCCChhhhhhh-hcccccc--CCCCCC
Q 007158 559 NVSTYQMCVLM--LFNNADRLSYQGNRAGNRDSCFRLEKV-PAISGLC--EGEECS 609 (615)
Q Consensus 559 ~vs~~Qa~iLl--~Fn~~~~~t~~ei~~~t~~~~~~l~~~-~~~~~l~--~~~~~~ 609 (615)
+++.+|++-+| -.....++|+.||.....+|+..--.+ ..+.++| ++++|-
T Consensus 10 ~~~~~q~Ae~l~kiLq~K~Eit~eDIlaqfeIS~s~Ay~I~~~lk~iCE~h~~eC~ 65 (118)
T 2cmx_A 10 TLNSYKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECE 65 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHSEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCTTTEE
T ss_pred HHhHHHHHHHHHHHHHHcCcCcHHHHHHHhccchhhhhHHHHHHHHHHHhCcchhh
Confidence 56778887664 345688999999999999998876544 5777889 667774
No 22
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=46.01 E-value=18 Score=31.23 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=37.7
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..||......+.+|..+|++.+|++...+-.+. --.|++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 57899999999988889999999999999999887553 224555443
No 23
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=44.56 E-value=22 Score=27.45 Aligned_cols=36 Identities=11% Similarity=-0.036 Sum_probs=29.8
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.+|.-|..|+.++ ..++|.+||++.+|++...+...
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~ 56 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVH 56 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 4677888888776 45689999999999999998854
No 24
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=43.48 E-value=16 Score=30.77 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=38.0
Q ss_pred EecHHHHHHHHhhhCC--CCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~--~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
.+|+.|..||...... +.+|..+|++.+++++..+-.+. --.|++.++.
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 4678899898777665 78999999999999998887553 3446666544
No 25
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=43.44 E-value=17 Score=31.88 Aligned_cols=48 Identities=17% Similarity=0.045 Sum_probs=38.2
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|+.|..||......+++|..+|++.+|+++..+-.++ --.|++.+..
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 57789999988888889999999999999999887554 2335665443
No 26
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=43.44 E-value=17 Score=31.12 Aligned_cols=48 Identities=8% Similarity=-0.052 Sum_probs=38.3
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
.+|+.|..||......+++|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 478899999999988889999999999999999887553 233566554
No 27
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.39 E-value=14 Score=31.82 Aligned_cols=46 Identities=9% Similarity=-0.039 Sum_probs=37.3
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEG 605 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~ 605 (615)
+|+.|..||......+++|..+|++.+++++..+-.+. --.|++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 67899999988888888999999999999999887554 23456655
No 28
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=43.28 E-value=21 Score=30.32 Aligned_cols=46 Identities=11% Similarity=-0.108 Sum_probs=35.9
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|..|..||.... .+++|..+|++.+|++...+-.+. --.|++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 5788999998888 888999999999999999887553 223555443
No 29
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=42.97 E-value=16 Score=32.83 Aligned_cols=53 Identities=4% Similarity=0.014 Sum_probs=33.2
Q ss_pred cCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhh
Q 007158 539 TNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEK 595 (615)
Q Consensus 539 ~~lg~~~l~~~~~~g~~~~l~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~ 595 (615)
|+.+++.+... ......++..+..||....++..+|+.||++.+|+|+..+..
T Consensus 8 ~~~~~~~~~~~----~~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~ 60 (171)
T 2e1c_A 8 HHHSSGLVPRG----SHMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHE 60 (171)
T ss_dssp --------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred ccccccccccc----cccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHH
Confidence 44555655432 223346788899999998888899999999999999998873
No 30
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=42.92 E-value=8.8 Score=28.59 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=27.4
Q ss_pred HHHHHHHhhhCC-CCccHHHHHHhcCCChhhhhhhh
Q 007158 563 YQMCVLMLFNNA-DRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 563 ~Qa~iLl~Fn~~-~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
..-.||.++.+. ..+|..||++.+|+|...+..+.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 344577777653 57999999999999999988664
No 31
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=42.67 E-value=16 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=36.3
Q ss_pred ecHHHHHHHHhh-hCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLF-NNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~F-n~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|+.|..||... ...+.+|..+|++.+|+++..+-.+. --.|++...
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 567888899888 77788999999999999999887554 223455443
No 32
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=42.51 E-value=16 Score=29.02 Aligned_cols=39 Identities=10% Similarity=-0.057 Sum_probs=33.4
Q ss_pred EecHHHHHHHHhhhCCCCccHHHH----HHhcCCChhhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGN----RAGNRDSCFRLEKVP 597 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei----~~~t~~~~~~l~~~~ 597 (615)
.+++.|..||....+.+.+|..+| ++.+++++..+-.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l 47 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAK 47 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 467789999998888889999999 899999999887553
No 33
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=41.96 E-value=24 Score=26.58 Aligned_cols=35 Identities=17% Similarity=-0.063 Sum_probs=28.6
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.|.-|..|+.++ ..++|.+||++.+|++...+...
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~ 51 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVH 51 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 466777777776 46789999999999999998844
No 34
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=41.90 E-value=14 Score=31.21 Aligned_cols=46 Identities=11% Similarity=0.045 Sum_probs=36.7
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEG 605 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~ 605 (615)
+++.|..||......+++|..+|++.+|+++..+-.+. --.|++.+
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r 79 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMT 79 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeee
Confidence 67899999988888889999999999999998887553 22345544
No 35
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=41.84 E-value=16 Score=30.78 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=36.1
Q ss_pred EEecHHHHHHHHhhhCCCC--ccHHHHHHhcCCChhhhhhhh---ccccccCC
Q 007158 558 LNVSTYQMCVLMLFNNADR--LSYQGNRAGNRDSCFRLEKVP---AISGLCEG 605 (615)
Q Consensus 558 l~vs~~Qa~iLl~Fn~~~~--~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~ 605 (615)
+.++..|..||..+.+.+. +|+.||++.+|++...+-... .-.|++.+
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r 74 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQR 74 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3467889999988776555 999999999999998887543 22455544
No 36
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=41.61 E-value=12 Score=29.89 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=38.6
Q ss_pred EEEEecHHHHHHHHhhhC--CCCccHHHHHHhcCCChhhhhhhh---ccccccC
Q 007158 556 HELNVSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCE 604 (615)
Q Consensus 556 ~~l~vs~~Qa~iLl~Fn~--~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~ 604 (615)
....++..|..||....+ +++++..||++.++++...+..+. --.||+.
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 445678899999988876 669999999999999999888654 2345655
No 37
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=41.20 E-value=20 Score=27.53 Aligned_cols=32 Identities=6% Similarity=-0.074 Sum_probs=25.8
Q ss_pred HHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 566 CVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 566 ~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.||..+.+...+|..||++.+|+|...+....
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 46666666678999999999999999887553
No 38
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=40.77 E-value=16 Score=30.73 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=33.3
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.++..|..||......+.+|..+|++.+|++...+-.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 367789999988877779999999999999999887553
No 39
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=40.31 E-value=15 Score=29.04 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=26.4
Q ss_pred HHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 567 VLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 567 iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
|+...++.+.+|+.||++.+++|+..+...
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrD 36 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAM 36 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHH
Confidence 667778889999999999999999998844
No 40
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=40.26 E-value=18 Score=30.59 Aligned_cols=48 Identities=8% Similarity=-0.047 Sum_probs=36.8
Q ss_pred EecHHHHHHHHhhhCCC--CccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 559 NVSTYQMCVLMLFNNAD--RLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~--~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
.+|+.|..||......+ ++|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 28 ~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 28 DITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp TCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 36788999998877654 8999999999999999887554 234566544
No 41
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=40.16 E-value=20 Score=28.58 Aligned_cols=36 Identities=8% Similarity=0.006 Sum_probs=30.5
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.+|.-|..|+.++ ..++|.+||++.+|+|...+...
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 4678888888887 56789999999999999999854
No 42
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=40.15 E-value=16 Score=30.99 Aligned_cols=38 Identities=5% Similarity=-0.193 Sum_probs=33.1
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
+++.|..||......+.+|..+|++.+|+++..+-.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l 68 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV 68 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 67889999988887778999999999999999887553
No 43
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=40.11 E-value=13 Score=31.93 Aligned_cols=49 Identities=6% Similarity=-0.071 Sum_probs=31.8
Q ss_pred EecHHHHHHHHhhhCC--CCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~--~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
.+|+.|..||...... +++|..+|++.+|+++..+-.+. --.|++.+..
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 3678899999877765 78999999999999998887553 3456766554
No 44
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=39.61 E-value=21 Score=31.08 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=37.1
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
++..|..||......+.+|..+|++.+|++...+-.+. --.|++.+..
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 67789999988887889999999999999999887553 2335665543
No 45
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=39.52 E-value=18 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=37.3
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..||......+.+|..+|++.+|++...+-.+. --.|++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 67889999998888789999999999999999887553 233455443
No 46
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=39.39 E-value=20 Score=28.66 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=30.5
Q ss_pred ecHHHHHHHHhhhC-CCCccHHHHHHhcCCChhhhhhhhc
Q 007158 560 VSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVPA 598 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~-~~~~t~~ei~~~t~~~~~~l~~~~~ 598 (615)
++..|..+|+.+-. .+.+|..||++.+|++...+-.+.+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46677777755544 6789999999999999999886643
No 47
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=39.29 E-value=14 Score=31.42 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=38.6
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
.+|+.|..||......+++|..+|++.+|+++..+-.+. --.|++.+..
T Consensus 34 ~lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 34 DVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 368899999988887789999999999999999887553 3345665443
No 48
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=39.29 E-value=15 Score=25.72 Aligned_cols=41 Identities=22% Similarity=0.442 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhCcccch
Q 007158 152 QTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQ 193 (615)
Q Consensus 152 ~~~l~~~ll~~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~ 193 (615)
++++.+.+-+++.+.|...+-| --..++..||.+||..+|+
T Consensus 9 s~~v~~~I~~iVe~r~qeGA~d-vs~Ssv~smLleLGLrVYe 49 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGIEE-ASLSNVSSMLLELGLRVYM 49 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTCTT-CCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCccc-ccHHHHHHHHHHhhhhhhh
Confidence 3455666667777777655522 2367889999999977775
No 49
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=39.21 E-value=17 Score=30.64 Aligned_cols=47 Identities=15% Similarity=0.010 Sum_probs=36.9
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|..|+.||......+.+|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 57889999988887778999999999999999987554 233455443
No 50
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.58 E-value=28 Score=27.48 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=31.4
Q ss_pred EEEEEecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 555 KHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 555 ~~~l~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.-....|.-|..||.++- .++|..||++.+|+|...++..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp ----CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHH
Confidence 344567888888988877 5689999999999999999855
No 51
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=38.56 E-value=18 Score=30.58 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=33.6
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.++..|..||......+.+|..+|++.+|+++..+-.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 467889999988887778999999999999999887553
No 52
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=38.45 E-value=16 Score=31.04 Aligned_cols=47 Identities=11% Similarity=0.005 Sum_probs=36.7
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|..|..||......+.+|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 57889999988888788999999999999998887553 223455443
No 53
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=38.28 E-value=34 Score=25.01 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=27.3
Q ss_pred ecHHHHHHHHhhh---CCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFN---NADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn---~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+++-|-.|+.+.- +.++.|++||++.+|+|...+...
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 4555555654433 346799999999999999999854
No 54
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=38.13 E-value=20 Score=30.88 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=37.0
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..||......+.+|..+|++.++++...+-.+. --.|++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 57789999988888888999999999999999887553 233455443
No 55
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=38.12 E-value=20 Score=31.27 Aligned_cols=47 Identities=21% Similarity=0.137 Sum_probs=37.3
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..||......+.+|..+|++.+|++...+-.+. --.|++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 57889999988888889999999999999999887553 223555443
No 56
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=37.99 E-value=27 Score=28.21 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=26.7
Q ss_pred ecHHHHHHH-Hhhh--CCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVL-MLFN--NADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iL-l~Fn--~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+++-|-.|+ +.|- +.+++|++||++.+|+|...+..+
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~ 59 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQI 59 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 344444444 4442 346899999999999999999854
No 57
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.98 E-value=17 Score=30.75 Aligned_cols=38 Identities=8% Similarity=-0.057 Sum_probs=33.0
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
+|..|..||......+.+|..+|++.+|++...+-.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l 71 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHH
Confidence 67889999988887778999999999999999887553
No 58
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=37.94 E-value=24 Score=29.75 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=35.8
Q ss_pred ecHHHHHHHHhhhCCC--CccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNAD--RLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~--~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|..|..||......+ .+|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 5778998998877665 8999999999999999887543 233555443
No 59
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=37.83 E-value=16 Score=28.05 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=26.2
Q ss_pred HHHHHhhhCCC---CccHHHHHHhcCCChhhhhhhh
Q 007158 565 MCVLMLFNNAD---RLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 565 a~iLl~Fn~~~---~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
..||..+.+.. .+|..||++.+|++...++.+.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 55665555544 8999999999999999988654
No 60
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=37.80 E-value=24 Score=27.51 Aligned_cols=32 Identities=3% Similarity=-0.208 Sum_probs=24.2
Q ss_pred HHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 565 MCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 565 a~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
..||.+...+. .|+.||++.+|++...+..+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHH
Confidence 34444444444 999999999999999998665
No 61
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=37.76 E-value=15 Score=31.64 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=37.5
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
.+|+.|..||... ..+++|..+|++.+|+++..+-.++ --.|++.++
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4688999999888 7789999999999999999887554 344676653
No 62
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=37.63 E-value=20 Score=30.48 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=33.7
Q ss_pred EecHHHHHHHHhhhC-CCCccHHHHHHhcCCChhhhhhhh
Q 007158 559 NVSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~-~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.++..|..||..... .+.+|..+|++.+|++...+-.+.
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l 71 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALL 71 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 367889999988887 788999999999999999887553
No 63
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=37.38 E-value=9.7 Score=29.26 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=28.1
Q ss_pred HHHHHHhhhC-CCCccHHHHHHhcCCChhhhhhhh
Q 007158 564 QMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 564 Qa~iLl~Fn~-~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.-.||-.+.+ +..++..||++.+|++.+.+.++.
T Consensus 21 eekVLe~LkeaG~PlkageIae~~GvdKKeVdKai 55 (80)
T 2lnb_A 21 EQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVL 55 (80)
T ss_dssp HHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 4457777766 578999999999999999999763
No 64
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=36.84 E-value=21 Score=29.94 Aligned_cols=45 Identities=4% Similarity=-0.119 Sum_probs=33.7
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhhcc---ccccCC
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCEG 605 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~~~---~~l~~~ 605 (615)
++.+..||..+...+++|+.||++.+|++...+-.+.+. .|+...
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~ 88 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNF 88 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 445566777776567799999999999999999866543 456543
No 65
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=36.66 E-value=15 Score=32.98 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=30.6
Q ss_pred HHHHHHHhhhCCCCccHHHHHHhcCCC-hhhhh--hh-hcc-ccccCCC
Q 007158 563 YQMCVLMLFNNADRLSYQGNRAGNRDS-CFRLE--KV-PAI-SGLCEGE 606 (615)
Q Consensus 563 ~Qa~iLl~Fn~~~~~t~~ei~~~t~~~-~~~l~--~~-~~~-~~l~~~~ 606 (615)
-+++++.+..++..+|+++|++.++++ ...+| +| .++ .||+.|+
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gk 144 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGK 144 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEE
Confidence 445555444457899999999999999 88888 33 333 3466554
No 66
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.56 E-value=34 Score=26.55 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=27.0
Q ss_pred ecHHHHHHHHh-h--hCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLML-F--NNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~-F--n~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+++-|-.|+.+ | .+..++|+.||++.+|+|...+...
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~ 58 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 34555555533 3 3346799999999999999999854
No 67
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=36.55 E-value=20 Score=30.98 Aligned_cols=38 Identities=5% Similarity=-0.068 Sum_probs=32.9
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++..|..||....+.+.+|..+|++.++++...+-.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 79 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVV 79 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 57889999988877778999999999999999887553
No 68
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=36.42 E-value=20 Score=30.68 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=37.1
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..||......+.+|..+|++.+|++...+-.+. --.|++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 57889999988887778999999999999999887554 223555443
No 69
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=36.29 E-value=16 Score=31.98 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=38.0
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|..|..||......+++|..+|++.+|+++..+-.++ --.|++.+..
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 57789999988887779999999999999999887553 3345665544
No 70
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=36.05 E-value=17 Score=30.94 Aligned_cols=47 Identities=6% Similarity=-0.092 Sum_probs=36.6
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|+.|..||......+.+|..+|++.+|++...+-.+. --.|++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 57788889988887788999999999999999887553 233555443
No 71
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=36.04 E-value=18 Score=28.58 Aligned_cols=37 Identities=3% Similarity=-0.003 Sum_probs=30.8
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++.+..||..+...+..|+.+|++.+|+++..+-.+.
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l 51 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHI 51 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHH
Confidence 5678888877766668999999999999999987654
No 72
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=35.80 E-value=28 Score=24.97 Aligned_cols=40 Identities=3% Similarity=-0.136 Sum_probs=29.3
Q ss_pred HHHHHHhhhCCCCccHHHHHHhc-----CCChhhhhhhhcccccc
Q 007158 564 QMCVLMLFNNADRLSYQGNRAGN-----RDSCFRLEKVPAISGLC 603 (615)
Q Consensus 564 Qa~iLl~Fn~~~~~t~~ei~~~t-----~~~~~~l~~~~~~~~l~ 603 (615)
++.|+.+.+.+..+|++||++.+ ++|...+--..+-.|+.
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE
Confidence 44555566777889999999999 99998877554444443
No 73
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=34.81 E-value=28 Score=27.50 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=32.5
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhhcc---ccccC
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI---SGLCE 604 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~~~---~~l~~ 604 (615)
++....||....+ +..|+.||++.+|++...+-.+.+. .||..
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4556678877776 7899999999999999988865432 45553
No 74
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=34.77 E-value=17 Score=31.40 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=37.6
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
.+|+.|..||......+.+|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 467889999988888778999999999999999887554 223455443
No 75
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=34.62 E-value=19 Score=31.82 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=37.3
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEG 605 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~ 605 (615)
.++..|..||......+.+|..+|++.+|++...+-.++ --.|++.+
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r 91 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDR 91 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 467899999988887778999999999999999887554 22355544
No 76
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.92 E-value=33 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=32.3
Q ss_pred EEecHHHHHHHHhhhCC--CCccHHHHHHhc-----CCChhhhhhh
Q 007158 558 LNVSTYQMCVLMLFNNA--DRLSYQGNRAGN-----RDSCFRLEKV 596 (615)
Q Consensus 558 l~vs~~Qa~iLl~Fn~~--~~~t~~ei~~~t-----~~~~~~l~~~ 596 (615)
+.++.-+..||..+.+. ..+|++||++.+ +++...+--.
T Consensus 13 ~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~ 58 (83)
T 2fu4_A 13 LKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRV 58 (83)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHH
Confidence 35678888999999875 689999999999 9998887644
No 77
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=33.71 E-value=38 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=26.5
Q ss_pred ecHHHHHHH-Hhh--hCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVL-MLF--NNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iL-l~F--n~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+++-|-.|+ +.| .+..+.|++||++.+|+|...+...
T Consensus 11 L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~ 50 (73)
T 1ku3_A 11 LSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQI 50 (73)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHH
Confidence 345555555 333 2336799999999999999999854
No 78
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=33.43 E-value=53 Score=22.60 Aligned_cols=22 Identities=9% Similarity=-0.141 Sum_probs=18.7
Q ss_pred CCccHHHHHHhcCCChhhhhhh
Q 007158 575 DRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 575 ~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.++|..+|++.+|+|...+...
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4579999999999999888654
No 79
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=33.42 E-value=30 Score=29.90 Aligned_cols=37 Identities=5% Similarity=-0.038 Sum_probs=31.7
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
++..+..||..+.++..+|+.+|++.+|+|+..+...
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~ 41 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSR 41 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 5677888888888778899999999999999988744
No 80
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.40 E-value=41 Score=22.04 Aligned_cols=30 Identities=7% Similarity=-0.179 Sum_probs=23.0
Q ss_pred HHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 566 CVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 566 ~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.|+.++.+ .+|..+|++.+|+|...+....
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHH
Confidence 45555543 4799999999999998887553
No 81
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=33.39 E-value=37 Score=29.22 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=30.6
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+..+..||....++..+|+.+|++.+|+|+..+...
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~ 37 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYR 37 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 356777888888888999999999999999988744
No 82
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=33.21 E-value=17 Score=31.72 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=36.2
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|..|..||......+++|..+|++.+++++..+-.++ --.|++.+.
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45678888888877788999999999999999887554 233565443
No 83
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=32.92 E-value=26 Score=30.86 Aligned_cols=48 Identities=10% Similarity=-0.058 Sum_probs=36.9
Q ss_pred ecHHHHHHHHhhhC-CCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~-~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|..|..||..... .+.+|..+|++.++++...+-.++ --.||+.+..
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 56789999988876 678999999999999999887553 3345665543
No 84
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=32.74 E-value=25 Score=30.48 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=36.7
Q ss_pred ecHHHHHHHHhh-hCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLF-NNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~F-n~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..||... ...+.+|..+|++.+|+++..+-.+. --.|++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 678899999888 57778999999999999998887543 233555444
No 85
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=32.38 E-value=31 Score=27.24 Aligned_cols=35 Identities=11% Similarity=-0.098 Sum_probs=27.9
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++.+..||..+ ...+|+.||++.+|++...+-.+.
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45566777777 456999999999999999988654
No 86
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=31.64 E-value=28 Score=29.54 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=36.4
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
.+|+.|..||......+. |..+|++.+|+++..+-.+. --.|++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 467889999988888777 99999999999999887553 223555443
No 87
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.54 E-value=35 Score=30.24 Aligned_cols=34 Identities=0% Similarity=-0.053 Sum_probs=26.9
Q ss_pred HHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 564 QMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 564 Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.+.+.+.-+....+|.++|++.+++|+..++++.
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil 49 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNIL 49 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4444455555567999999999999999999875
No 88
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=31.35 E-value=40 Score=26.86 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=31.7
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhhccc---cccCC
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAIS---GLCEG 605 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~~~~---~l~~~ 605 (615)
++....||....+ ++.|+.||++.+|++...+-.+.+.+ ||...
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~ 68 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVET 68 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3455567766655 56999999999999999988665433 55543
No 89
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=31.28 E-value=33 Score=27.68 Aligned_cols=36 Identities=8% Similarity=-0.063 Sum_probs=28.4
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++.+..||..+. ...+|+.||++.+|++...+-.+.
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L 60 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQL 60 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456667776666 457899999999999999887654
No 90
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.08 E-value=21 Score=30.34 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=37.5
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|+.|..||......+.+|..+|++.++++...+-.+. --.|++.+..
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 57889999988887779999999999999999887553 2335655443
No 91
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=31.01 E-value=36 Score=28.76 Aligned_cols=47 Identities=9% Similarity=-0.058 Sum_probs=32.2
Q ss_pred ecHHHHHHHHhhh-CCCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFN-NADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn-~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
++..|..+|.... ..+++|..||++.+|+++..+-.+. --.|++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4566666664443 3467999999999999999887554 234555443
No 92
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=30.30 E-value=38 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=31.4
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++..+-.||..+.++..+|+.||++.+|+|+..+....
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45567778888888788999999999999999887543
No 93
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=30.00 E-value=34 Score=30.55 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=32.8
Q ss_pred EEEEecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 556 HELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 556 ~~l~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
....++..+..||.....+..+|+.||++.+|+|+..+...
T Consensus 11 ~~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~ 51 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFR 51 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 34456778888998888888899999999999999988744
No 94
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=29.91 E-value=30 Score=29.57 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=35.4
Q ss_pred ecHHHHHHHHhhh-CCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFN-NADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn-~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|..|..||.... ..+.+|..+|++.+++++..+-.+. --.|++.+..
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 5678999998775 4457999999999999999887553 3345665543
No 95
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.00 E-value=35 Score=26.45 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=26.4
Q ss_pred HHHHHHhhhCCC---CccHHHHHHhcCCChhhhhhhh
Q 007158 564 QMCVLMLFNNAD---RLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 564 Qa~iLl~Fn~~~---~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
+..||..+.+.. .+|..+|++.+|++...++...
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 455666565544 8999999999999999888553
No 96
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.95 E-value=40 Score=29.08 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=31.5
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
++..+-.||..+.++..+|+.+|++.+|+|+..+...
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 43 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARR 43 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 4567778888888888999999999999999888743
No 97
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=28.60 E-value=40 Score=29.19 Aligned_cols=37 Identities=11% Similarity=-0.010 Sum_probs=31.5
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
++..+..||....++...|+.+|++.+|+|+..+...
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 42 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVR 42 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 5667778888888888999999999999999987743
No 98
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.38 E-value=36 Score=22.74 Aligned_cols=31 Identities=10% Similarity=-0.173 Sum_probs=22.8
Q ss_pred HHHhhhCCCCccHHHHHHhcCCChhhhhhhhcc
Q 007158 567 VLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI 599 (615)
Q Consensus 567 iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~~~ 599 (615)
|+.+..+ .+|+.+|++.+|+|...+-...+-
T Consensus 14 i~~l~~~--g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 14 ISRLLEK--GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHT--TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHc--CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3334443 389999999999999888765443
No 99
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=28.22 E-value=35 Score=27.67 Aligned_cols=36 Identities=11% Similarity=-0.112 Sum_probs=29.0
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++.+..||..+ ..++.|+.||++.+|++...+-.+.
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l 55 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHL 55 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHH
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45677788777 4456999999999999999988664
No 100
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=28.20 E-value=25 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=28.4
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+|.-|..|+.++ ..++|..||++.+|+|...+...
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~ 64 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTH 64 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHH
Confidence 466677777766 45789999999999999999854
No 101
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.11 E-value=43 Score=28.98 Aligned_cols=37 Identities=3% Similarity=-0.002 Sum_probs=31.5
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
++..+..||....++...|+.+|++.+|+|+..+...
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 41 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHER 41 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 5667778888888888999999999999999988744
No 102
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=28.03 E-value=33 Score=29.18 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=29.8
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+..+..||..+..+..+|+.+|++.+|+|...+...
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~ 38 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKR 38 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 445777888887777899999999999999988743
No 103
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=27.96 E-value=32 Score=32.89 Aligned_cols=39 Identities=13% Similarity=-0.071 Sum_probs=32.8
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.++..|..||..+.+.+.+|..||++.+|+++..+-.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L 187 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKI 187 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 356788999988877778999999999999999887553
No 104
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.77 E-value=34 Score=24.15 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=22.7
Q ss_pred HHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 565 MCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 565 a~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.-|+.++- .++|..||++.+|+|+..+...
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~ 33 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETH 33 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHH
Confidence 34444443 4679999999999999998854
No 105
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.21 E-value=30 Score=31.87 Aligned_cols=48 Identities=6% Similarity=-0.111 Sum_probs=37.7
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|+.|..||......+.+|..+|++.+++++..+-.++ --.|++.+..
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 57899999988877778999999999999999887554 3345665443
No 106
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.12 E-value=42 Score=35.20 Aligned_cols=53 Identities=11% Similarity=0.044 Sum_probs=43.2
Q ss_pred EEecHHHHHHHHhhhCC--CCccHHHHHHhcCCChhhhhhhh---ccccccCCCCCCc
Q 007158 558 LNVSTYQMCVLMLFNNA--DRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEECSS 610 (615)
Q Consensus 558 l~vs~~Qa~iLl~Fn~~--~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~~~~ 610 (615)
+.+|..|..||....++ +.+|..||++.++++...+-.++ --.||+.++.+..
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~ 457 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQ 457 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCS
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCC
Confidence 35789999999998887 88999999999999999887554 4457887776543
No 107
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=26.20 E-value=35 Score=30.81 Aligned_cols=48 Identities=6% Similarity=0.061 Sum_probs=37.1
Q ss_pred ecHHHHHHHHhhhC--CCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~--~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|+.|..||..... .+++|..+|++.+|+++..+-.++ --.|++.+..
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 78899999987765 568999999999999999887554 3345665443
No 108
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=25.96 E-value=49 Score=25.94 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=26.3
Q ss_pred HHHHHHHhhhCCC-CccHHHHHHhcCCChhh-hhhh
Q 007158 563 YQMCVLMLFNNAD-RLSYQGNRAGNRDSCFR-LEKV 596 (615)
Q Consensus 563 ~Qa~iLl~Fn~~~-~~t~~ei~~~t~~~~~~-l~~~ 596 (615)
-+..+|..+...+ ++|..||++.+|+++.. +-.+
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~ 51 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGL 51 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHH
Confidence 3455666666655 89999999999999999 6543
No 109
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=25.86 E-value=2.1e+02 Score=22.70 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhccCCCcHHHHHHHH
Q 007158 337 LDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFV 383 (615)
Q Consensus 337 l~l~~~~~~l~~~~F~~~~~f~~~i~~af~~~ln~~~~~~e~La~y~ 383 (615)
-+++..|..++-.+|.++.....+|++-...++-.+-.++..+--++
T Consensus 12 ~~L~~~YR~ill~YF~~d~~~n~~Id~fVn~aFfadi~v~~ivEIHM 58 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTDKALKEKIDKFINAVFCANIPVPEIIEIHM 58 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 34567778899999999877666555333333323555665555443
No 110
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=25.22 E-value=48 Score=27.18 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=29.6
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++.|..||..+.+ ...|+.+|++.+|++...+-.+.
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l 66 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQL 66 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHH
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 4567778877776 67999999999999999887554
No 111
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=25.11 E-value=75 Score=23.84 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=31.2
Q ss_pred HHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhhccc
Q 007158 563 YQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAIS 600 (615)
Q Consensus 563 ~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~~~~ 600 (615)
+.-.|..+|.++.-||+.+|.+.|+=++.-|..+..-+
T Consensus 9 l~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~I 46 (69)
T 1bby_A 9 VLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEI 46 (69)
T ss_dssp HHHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHH
Confidence 34567789999999999999999999998888665333
No 112
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.97 E-value=37 Score=29.18 Aligned_cols=49 Identities=12% Similarity=0.040 Sum_probs=35.5
Q ss_pred ecHHHHHHHHhh--hCCCCccHHHHHHhcCCChhhhhhhh---ccccccCCCCC
Q 007158 560 VSTYQMCVLMLF--NNADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEEC 608 (615)
Q Consensus 560 vs~~Qa~iLl~F--n~~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~~ 608 (615)
+|..|..||... ++++.+|..+|++.+++++..+-.++ --.|++.+..+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~ 86 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPN 86 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeec
Confidence 577788777655 44567999999999999999887554 33456654443
No 113
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=24.82 E-value=60 Score=28.00 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=36.7
Q ss_pred EecHHHHHHHHhhhC-CCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~-~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
-+|+.|+.||..... ++..+..+|++.+|+++..+-.++ --.|++.+..
T Consensus 28 gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 28 ELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp CCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 368899999987764 567888999999999999887554 2345664443
No 114
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=24.75 E-value=36 Score=26.15 Aligned_cols=31 Identities=3% Similarity=0.048 Sum_probs=23.4
Q ss_pred HHHHhhhCC------CCccHHHHHHhcCCChhhhhhh
Q 007158 566 CVLMLFNNA------DRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 566 ~iLl~Fn~~------~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.||...++. ...|+.||++.+|+|+..+...
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHH
Confidence 355555443 7899999999999998877643
No 115
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=24.54 E-value=57 Score=28.05 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=31.5
Q ss_pred ecHHHHHHHHhhhCC-----CCccHHHHHHhcCCChhhhhhhh---cccccc
Q 007158 560 VSTYQMCVLMLFNNA-----DRLSYQGNRAGNRDSCFRLEKVP---AISGLC 603 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~-----~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~ 603 (615)
+|+.|..||...... +++|..+|++.+++++..+-.++ --.||+
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 678899998777653 45999999999999999887543 223666
No 116
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=24.49 E-value=1.8e+02 Score=23.26 Aligned_cols=56 Identities=13% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHH-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHH
Q 007158 26 EKTW-KILEHAIHEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYSGLVSTMTLHLKE 82 (615)
Q Consensus 26 ~~~W-~~l~~~i~~I~~~~~~~~s~~~lY~~vy~lc~~~~~e~LY~~l~~~i~~~~~~ 82 (615)
+.+| +.++..+..+.... .+.+|.+++..|.--...-..+.+...+-..|..++..
T Consensus 35 EcGW~Devr~~~r~~i~~~-~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 35 QEGWVDKVKDLTKSEMNIN-ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp HTTHHHHHHHHHHHHHHHH-TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHhc-CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 5667 36777777776655 56778888887776665555555555555555555543
No 117
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.99 E-value=55 Score=28.63 Aligned_cols=37 Identities=11% Similarity=-0.000 Sum_probs=31.2
Q ss_pred ecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
++..+..||....++..+|+.||++.+|+|+..+...
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~ 44 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRR 44 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 5667778888888888899999999999999887743
No 118
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.98 E-value=53 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=29.4
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
.+|.-|..||.++- .++|.+||++.+|+++..+...
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~ 69 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQ 69 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHH
Confidence 46777888887764 5789999999999999998844
No 119
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=23.93 E-value=39 Score=26.97 Aligned_cols=37 Identities=3% Similarity=-0.138 Sum_probs=27.6
Q ss_pred cHHHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 561 STYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 561 s~~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
++....||..+-..++.|+.||++.+|++...+-.+.
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL 62 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHL 62 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4556667733333467999999999999999888664
No 120
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=23.61 E-value=53 Score=24.89 Aligned_cols=38 Identities=8% Similarity=-0.007 Sum_probs=30.8
Q ss_pred EecHHHHHHHHhhhCCCCccHHHHHHhcC----CChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNADRLSYQGNRAGNR----DSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~~~t~~ei~~~t~----~~~~~l~~~ 596 (615)
.+|..|..||....+.+.+|..||++.++ +++..+-.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~ 47 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTM 47 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHH
Confidence 46889999998887778999999999996 566666544
No 121
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=23.27 E-value=39 Score=29.60 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=33.0
Q ss_pred ecHHHHHHHHhhhC--CCCccHHHHHHhcCCChhhhhhhh---ccccccCCC
Q 007158 560 VSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGE 606 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~--~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~ 606 (615)
+|..|..||..... .+.+|..+|++.+++++..+-.++ --.||+.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 57789989887776 468999999999999998887553 334566543
No 122
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=23.21 E-value=36 Score=27.68 Aligned_cols=34 Identities=6% Similarity=-0.033 Sum_probs=26.4
Q ss_pred HHHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 563 YQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 563 ~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.+..||..+.+ +++|+.||++.+|+++..+-...
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L 59 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATATGMNLTTASANL 59 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHH
Confidence 34456666654 67999999999999999988554
No 123
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.20 E-value=55 Score=28.03 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=33.0
Q ss_pred EEEEecHHHHHHHHhhhC-----CCCccHHHHHHhcCCChhhhhhhh
Q 007158 556 HELNVSTYQMCVLMLFNN-----ADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 556 ~~l~vs~~Qa~iLl~Fn~-----~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
..+-+|.-++.+|+.+-. ....|.++|++.+|+++..+..+.
T Consensus 26 ~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L 72 (135)
T 2v79_A 26 KQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRL 72 (135)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 345678888888866654 456899999999999999998553
No 124
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.99 E-value=85 Score=22.53 Aligned_cols=35 Identities=23% Similarity=0.038 Sum_probs=26.0
Q ss_pred ecHHHHHHHHh-hhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLML-FNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~-Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
+++-|-.|+.+ |- .++|..||++.+|+|...+...
T Consensus 16 L~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 16 LTTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHH
Confidence 45566666644 43 3589999999999999988744
No 125
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=22.70 E-value=51 Score=31.51 Aligned_cols=49 Identities=6% Similarity=-0.006 Sum_probs=38.5
Q ss_pred EecHHHHHHHHhhhC--CCCccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 559 NVSTYQMCVLMLFNN--ADRLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~--~~~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
.+|..|..||....+ .+++|..||++.+++++..+-.+. --.|++.+.-
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecC
Confidence 478899999988876 458999999999999998887554 3346665544
No 126
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.47 E-value=81 Score=24.50 Aligned_cols=35 Identities=9% Similarity=-0.102 Sum_probs=25.6
Q ss_pred ecHHHHHHHHh-hhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 560 VSTYQMCVLML-FNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 560 vs~~Qa~iLl~-Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
++.-|-.|+.+ |- .++|+.||++.+|++...+...
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~ 73 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSR 73 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHH
Confidence 34455555544 43 4589999999999999998844
No 127
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=21.79 E-value=42 Score=28.11 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhhCcccchhhc
Q 007158 152 QTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDF 196 (615)
Q Consensus 152 ~~~l~~~ll~~I~~~R~g~~i~~~~lk~ii~~l~~lg~~~Y~~~F 196 (615)
++.+.+.+-+++.+.|...+-| --+.++..||.+||+.+|+-.-
T Consensus 9 s~~v~~~I~~iVe~r~qeGA~d-vs~SSv~smLlELGLrVY~~Q~ 52 (127)
T 3on0_A 9 NNNVYEQITDLVTIRKQEGIEE-ASLSNVSSMLLELGLRVYMIQQ 52 (127)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTT-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCccc-ccHHHHHHHHHHHhHHHHHHHH
Confidence 4566667777778888766522 2367889999999977776333
No 128
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=21.76 E-value=57 Score=26.21 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=31.6
Q ss_pred EecHHHHHHHHhhhCC------CCccHHHHHHhcCCChhhhhhh
Q 007158 559 NVSTYQMCVLMLFNNA------DRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~------~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
-+++.|..+|..+... ..++..+|++.++++...|-.+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~ 56 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRV 56 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHH
Confidence 4788999998866553 6799999999999999888754
No 129
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=21.50 E-value=63 Score=27.95 Aligned_cols=34 Identities=6% Similarity=-0.021 Sum_probs=25.9
Q ss_pred HHHHHHhhhCCCCccHHHHHHhcCCChhhhhhhh
Q 007158 564 QMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 564 Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.+.+.+.-+.+..+|.++|++.+++|+..++++.
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil 51 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIM 51 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3444444444557999999999999999999774
No 130
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.23 E-value=61 Score=25.19 Aligned_cols=29 Identities=21% Similarity=-0.008 Sum_probs=23.7
Q ss_pred HHHHhhhCCCCccHHHHHHhcCCChhhhh
Q 007158 566 CVLMLFNNADRLSYQGNRAGNRDSCFRLE 594 (615)
Q Consensus 566 ~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~ 594 (615)
.|-.+.|+...+|+.+|++.||++.+.+-
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~ 40 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTA 40 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHH
Confidence 34566777779999999999999877774
No 131
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=20.75 E-value=61 Score=29.56 Aligned_cols=32 Identities=3% Similarity=-0.128 Sum_probs=29.2
Q ss_pred HHHHHHHhhhCCCCccHHHHHHhcCCChhhhh
Q 007158 563 YQMCVLMLFNNADRLSYQGNRAGNRDSCFRLE 594 (615)
Q Consensus 563 ~Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~ 594 (615)
-|..|+.+.+++..+|++||++.+++|...+.
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiR 44 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIR 44 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHH
Confidence 46789999999999999999999999998877
No 132
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=20.72 E-value=63 Score=30.82 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=38.5
Q ss_pred EecHHHHHHHHhhhCCC--CccHHHHHHhcCCChhhhhhhh---ccccccCCCCCC
Q 007158 559 NVSTYQMCVLMLFNNAD--RLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEECS 609 (615)
Q Consensus 559 ~vs~~Qa~iLl~Fn~~~--~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~~~ 609 (615)
.+|+.|..||......+ ++|..||++.+++++..+-.++ --.|++.+..+.
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 36789999998877654 5999999999999999877553 344677665543
No 133
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=20.56 E-value=72 Score=27.43 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHhhhCC-CCccHHHHHHhcCCChhhhhhhh
Q 007158 566 CVLMLFNNA-DRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 566 ~iLl~Fn~~-~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.+.+.-+.. ..+|.++|++.+|+|+..++++.
T Consensus 17 L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil 49 (143)
T 3t8r_A 17 MISLAKKEGQGCISLKSIAEENNLSDLYLEQLV 49 (143)
T ss_dssp HHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 333443433 46999999999999999999775
No 134
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=20.47 E-value=50 Score=29.34 Aligned_cols=48 Identities=17% Similarity=-0.015 Sum_probs=35.7
Q ss_pred ecHHHHHHHHhhhCCC---CccHHHHHHhcCCChhhhhhhh---ccccccCCCC
Q 007158 560 VSTYQMCVLMLFNNAD---RLSYQGNRAGNRDSCFRLEKVP---AISGLCEGEE 607 (615)
Q Consensus 560 vs~~Qa~iLl~Fn~~~---~~t~~ei~~~t~~~~~~l~~~~---~~~~l~~~~~ 607 (615)
+|..|..||......+ .+|..+|++.+++++..+-.+. --.|++.+..
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 5788999988776644 3999999999999999887553 3335665543
No 135
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=20.30 E-value=74 Score=25.50 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=31.9
Q ss_pred EEecHHHHHHHHhhhCCCCccHHHHHH-hcCCChhhhh
Q 007158 558 LNVSTYQMCVLMLFNNADRLSYQGNRA-GNRDSCFRLE 594 (615)
Q Consensus 558 l~vs~~Qa~iLl~Fn~~~~~t~~ei~~-~t~~~~~~l~ 594 (615)
..++.-|+.||......+..|..+|++ ..+|+...+-
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvs 49 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVN 49 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHH
Confidence 457889999999888877999999999 9999877664
No 136
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=20.25 E-value=85 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.020 Sum_probs=25.5
Q ss_pred HHHHHHhhhC-CCCccHHHHHHhcCCChhhhhhhh
Q 007158 564 QMCVLMLFNN-ADRLSYQGNRAGNRDSCFRLEKVP 597 (615)
Q Consensus 564 Qa~iLl~Fn~-~~~~t~~ei~~~t~~~~~~l~~~~ 597 (615)
.+.+.+.-+. ...+|.++|++.+++|+..++++.
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil 65 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLI 65 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3344444443 446999999999999999999774
No 137
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=20.05 E-value=90 Score=27.30 Aligned_cols=33 Identities=9% Similarity=-0.065 Sum_probs=28.2
Q ss_pred HHHHHHhhhCCCCccHHHHHHhcCCChhhhhhh
Q 007158 564 QMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKV 596 (615)
Q Consensus 564 Qa~iLl~Fn~~~~~t~~ei~~~t~~~~~~l~~~ 596 (615)
-..||....++..+|+.+|++.+|+|+..+...
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~r 37 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRR 37 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHH
Confidence 446788888888999999999999999988744
Done!