Query 007161
Match_columns 615
No_of_seqs 190 out of 824
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:44:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 95.9 0.033 1.1E-06 58.2 10.6 78 30-119 126-208 (444)
2 4djk_A Probable glutamate/gamm 94.8 0.28 9.6E-06 52.2 13.6 85 29-120 130-222 (511)
3 3l1l_A Arginine/agmatine antip 94.4 0.19 6.4E-06 52.4 10.8 80 30-118 126-210 (445)
4 2l6p_A PHAC1, PHAC2 and PHAD g 28.8 21 0.00072 32.0 1.7 21 585-607 30-50 (124)
5 3luu_A Uncharacterized protein 23.8 26 0.0009 30.0 1.3 17 584-600 34-50 (101)
6 3bwz_A Cellulosomal scaffoldin 22.8 23 0.0008 33.9 0.8 6 472-477 111-116 (181)
7 2l6n_A Uncharacterized protein 22.5 32 0.0011 31.2 1.7 14 585-598 37-50 (132)
8 3ghp_A Cellulosomal scaffoldin 18.2 33 0.0011 33.9 0.8 11 426-436 119-129 (227)
9 2rdd_B UPF0092 membrane protei 16.9 1.8E+02 0.006 20.7 4.2 33 309-341 1-33 (37)
10 1tyj_A Cellulosomal scaffoldin 16.9 32 0.0011 32.7 0.3 13 75-87 37-49 (170)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.88 E-value=0.033 Score=58.25 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=44.6
Q ss_pred ehhHHHHHHHHHHhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhcccCcceeee-cChHHHHHHHhhcCccc-cee
Q 007161 30 LILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWNPKVISA-ISPLYIIKYFRETGKTG-WIS 104 (615)
Q Consensus 30 v~is~~ILv~LF~~Q~~GT~kvg~~---F~PImlvWf~~i~~~Gi~ni~~~~p~Vl~A-~nP~ya~~f~~~~~~~g-~~~ 104 (615)
..+++++++++..+.-+|++..+++ +..+.++=++.+.+.|+.+. +|+-+.. ++|. +..| +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~---------g~~~~~~~ 193 (444)
T 3gia_A 126 AITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPS---------AVSGMIFA 193 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCc---------chHHHHHH
Confidence 3567888888888999998776654 44544444444555555543 4443222 2332 1111 223
Q ss_pred ecceeeeecchhhhh
Q 007161 105 LGGLLLCITGTEAMF 119 (615)
Q Consensus 105 LG~V~L~iTG~EALy 119 (615)
+...+.+.+|-|+.-
T Consensus 194 ~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 194 SAIFFLSYMGFGVIT 208 (444)
T ss_dssp HHHGGGGGTHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 444567889999763
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=94.80 E-value=0.28 Score=52.19 Aligned_cols=85 Identities=21% Similarity=0.163 Sum_probs=49.2
Q ss_pred EehhHHHHHHHHHHhhcccchhhhhhhhhH----HHHHHHHHHHHHHHhhcccCccee----eecChHHHHHHHhhcCcc
Q 007161 29 LLILACVILVGLFALQHFGTHKVAVMFAPI----IIVWLISIFAVGLYNVIHWNPKVI----SAISPLYIIKYFRETGKT 100 (615)
Q Consensus 29 vv~is~~ILv~LF~~Q~~GT~kvg~~F~PI----mlvWf~~i~~~Gi~ni~~~~p~Vl----~A~nP~ya~~f~~~~~~~ 100 (615)
...+++++++++..+--+|.+..+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 456788888888899999988777654332 222344555667766554333211 1222211 1234
Q ss_pred cceeecceeeeecchhhhhc
Q 007161 101 GWISLGGLLLCITGTEAMFA 120 (615)
Q Consensus 101 g~~~LG~V~L~iTG~EALyA 120 (615)
+|..+..++.+.+|-|+.-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~ 222 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASAT 222 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTG
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 56677788899999997644
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=94.38 E-value=0.19 Score=52.44 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=39.9
Q ss_pred ehhHHHHHHHHHHhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhcccCccee-eecChHHHHHHHhhcCccc-cee
Q 007161 30 LILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWNPKVI-SAISPLYIIKYFRETGKTG-WIS 104 (615)
Q Consensus 30 v~is~~ILv~LF~~Q~~GT~kvg~~---F~PImlvWf~~i~~~Gi~ni~~~~p~Vl-~A~nP~ya~~f~~~~~~~g-~~~ 104 (615)
..+++++++++..+--+|.+..+++ +.++.++=++.+.+.| +...+++.+ ..++|.-. .+..+ +..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 196 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG---WFWFRGETYMAAWNVSGL------GTFGAIQST 196 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT---STTCCCCCCCCC-----------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChhhcccccCccCC------ccHHHHHHH
Confidence 3467777777888888898877765 3444333333333333 334455543 33444210 00111 233
Q ss_pred ecceeeeecchhhh
Q 007161 105 LGGLLLCITGTEAM 118 (615)
Q Consensus 105 LG~V~L~iTG~EAL 118 (615)
+...+.+.+|-|+.
T Consensus 197 ~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 197 LNVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHHTTTTTTHH
T ss_pred HHHHHHHHHhHHHH
Confidence 44556778898865
No 4
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=28.84 E-value=21 Score=32.05 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=14.8
Q ss_pred HHHHhhhcCCCCcccccCCCCEE
Q 007161 585 YSFLRKNCRGPSVALNIPHISLI 607 (615)
Q Consensus 585 Y~FLRkNcR~~~~~L~IPh~~Ll 607 (615)
|.|||.||+++...-. .++++
T Consensus 30 ~~wLRd~Cpcaec~~~--~qr~l 50 (124)
T 2l6p_A 30 AEFLRVHSPSAEVQGH--GNPVL 50 (124)
T ss_dssp HHHHHHTCCCSSCCSC--CCCCC
T ss_pred HHHHHhcCCCcccCCC--Ccccc
Confidence 5899999999765443 44444
No 5
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=23.80 E-value=26 Score=29.97 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=10.4
Q ss_pred HHHHHhhhcCCCCcccc
Q 007161 584 LYSFLRKNCRGPSVALN 600 (615)
Q Consensus 584 ~Y~FLRkNcR~~~~~L~ 600 (615)
=|.|||+||+.+...-.
T Consensus 34 ~~~wLRd~c~ca~c~~~ 50 (101)
T 3luu_A 34 TFEHLRVECPCAECKGH 50 (101)
T ss_dssp EHHHHHHTCCCC-----
T ss_pred CHHHHHhhCCChhhcCc
Confidence 37899999997765433
No 6
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=22.76 E-value=23 Score=33.90 Aligned_cols=6 Identities=50% Similarity=0.938 Sum_probs=2.2
Q ss_pred Ccccee
Q 007161 472 GRMAVI 477 (615)
Q Consensus 472 ~~~~~~ 477 (615)
|...++
T Consensus 111 G~iavI 116 (181)
T 3bwz_A 111 GTVAVV 116 (181)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 333333
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=22.48 E-value=32 Score=31.24 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=11.7
Q ss_pred HHHHhhhcCCCCcc
Q 007161 585 YSFLRKNCRGPSVA 598 (615)
Q Consensus 585 Y~FLRkNcR~~~~~ 598 (615)
|.|||.||+.+...
T Consensus 37 ~~wLRd~Cpcaec~ 50 (132)
T 2l6n_A 37 CELLRVYSPSAEVH 50 (132)
T ss_dssp HHHHHHSCSCSSSS
T ss_pred HHHHHhcCCCcccC
Confidence 69999999987654
No 8
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=18.22 E-value=33 Score=33.86 Aligned_cols=11 Identities=27% Similarity=0.480 Sum_probs=5.5
Q ss_pred EEEEEeeeccc
Q 007161 426 CIVRYGYKDVQ 436 (615)
Q Consensus 426 ~~~ryGy~d~~ 436 (615)
.++.-|||-..
T Consensus 119 ~iavIgFKVLk 129 (227)
T 3ghp_A 119 TLAVVGFKVLQ 129 (227)
T ss_dssp EEEEEEEEESS
T ss_pred eeEEEEEEEEe
Confidence 44445555543
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=16.87 E-value=1.8e+02 Score=20.65 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHhHhHHHHHhhhhcc
Q 007161 309 GGWVPLVLSSVFMVVMYIWHYGTRKKYNFDLHN 341 (615)
Q Consensus 309 GGW~pl~ia~~~~~iM~~W~~G~~~~~~~~~~~ 341 (615)
|||..++.-++++.+||..-.-..+|.+.+.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
No 10
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=16.85 E-value=32 Score=32.75 Aligned_cols=13 Identities=15% Similarity=0.353 Sum_probs=0.0
Q ss_pred cccCcceeeecCh
Q 007161 75 IHWNPKVISAISP 87 (615)
Q Consensus 75 ~~~~p~Vl~A~nP 87 (615)
++|||+||+|++|
T Consensus 37 IKYDP~vLQaV~~ 49 (170)
T 1tyj_A 37 IKYNTTYLQPWDT 49 (170)
T ss_dssp EECCTTTEEEEET
T ss_pred eeeChhheecccc
Done!