Query 007161
Match_columns 615
No_of_seqs 190 out of 824
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 18:44:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007161.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007161hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 24.6 22 0.0016 22.2 2.2 20 310-329 5-24 (27)
2 d1or7a2 a.177.1.1 (A:-1-111) S 16.1 39 0.0029 26.5 2.8 24 573-596 73-96 (113)
3 d2yvxa3 f.57.1.1 (A:276-448) M 9.8 23 0.0016 31.5 -0.8 116 140-268 12-129 (173)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.3 35 0.0025 25.1 0.2 39 141-181 16-54 (57)
5 d1iray2 b.1.1.4 (Y:102-204) Ty 7.3 97 0.0071 24.0 2.3 26 408-433 57-82 (103)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 7.0 1.1E+02 0.0083 22.6 2.4 30 406-435 46-75 (89)
7 d1ug8a_ d.68.7.1 (A:) Poly(A)- 6.2 1E+02 0.0076 24.3 1.8 22 437-458 7-28 (87)
8 d1jb0i_ f.23.17.1 (I:) Subunit 6.0 17 0.0013 24.6 -2.6 26 224-249 13-38 (38)
9 d1vlfn1 b.3.5.1 (N:196-274) Tr 5.7 2.2E+02 0.016 21.1 3.6 22 410-434 39-61 (79)
10 d1cs6a3 b.1.1.4 (A:209-299) Ax 5.7 1.6E+02 0.011 21.5 2.6 41 389-429 35-75 (91)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.55 E-value=22 Score=22.17 Aligned_cols=20 Identities=30% Similarity=0.850 Sum_probs=16.6
Q ss_pred cchHHHHHHHHHHHHHHHhH
Q 007161 310 GWVPLVLSSVFMVVMYIWHY 329 (615)
Q Consensus 310 GW~pl~ia~~~~~iM~~W~~ 329 (615)
||+.|+.-+.-..-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 89998888888888888854
No 2
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=16.08 E-value=39 Score=26.50 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHHHHhhhcCCCC
Q 007161 573 SSFVKRFMIDILYSFLRKNCRGPS 596 (615)
Q Consensus 573 Ss~lKK~vIn~~Y~FLRkNcR~~~ 596 (615)
.+|+.+++-|.+++++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998764
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=9.84 E-value=23 Score=31.48 Aligned_cols=116 Identities=9% Similarity=0.168 Sum_probs=63.1
Q ss_pred hHHHhhcccc--hhhhccCCccccCcceeeccCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecC
Q 007161 140 PCLVVQYMGQ--AAYLSKNLDKIPNSFYDSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTS 217 (615)
Q Consensus 140 P~L~L~Y~GQ--aA~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAaIIASQA~Isg~FSi~~Qai~Lg~fPr~ki~hTS 217 (615)
|-|+++.+|+ +|+++++-|+.-+.+-. =..|.|+ ++-++.-++||+. +++-+++++|..-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 3444555444 46666655543332211 1256665 6778888899986 5889999999643211 11
Q ss_pred CccCCceeechhhHHHHHHHhheeEEecCchhhhhhhcceeeehhHHHHHH
Q 007161 218 RHIYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFL 268 (615)
Q Consensus 218 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~vm~iTT~L 268 (615)
+...-++.+-.+|=+.+-..+.....+++...++-+=|++...+|++.+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 223344566666665555444444444554445544455555444444443
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.27 E-value=35 Score=25.06 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=25.3
Q ss_pred HHHhhcccchhhhccCCccccCcceeeccCcchHHHHHHHH
Q 007161 141 CLVVQYMGQAAYLSKNLDKIPNSFYDSIPEPVFWPVFVVAT 181 (615)
Q Consensus 141 ~L~L~Y~GQaA~ll~~p~~~~npFf~~~P~~~~~P~~vlAt 181 (615)
++++--++=+.|+.++.. .+.-|.++|+.+.|-.+-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 344444555667776644 334599999999997765544
No 5
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.34 E-value=97 Score=24.04 Aligned_cols=26 Identities=23% Similarity=0.545 Sum_probs=21.0
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeee
Q 007161 408 EERFLIGRVCPRPYRMYRCIVRYGYK 433 (615)
Q Consensus 408 ~eR~~v~~~~~~~~~~~r~~~ryGy~ 433 (615)
+..+.+..+...+.|.|+|.+++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45677888888888999999988664
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.96 E-value=1.1e+02 Score=22.56 Aligned_cols=30 Identities=13% Similarity=0.072 Sum_probs=23.7
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeecc
Q 007161 406 SPEERFLIGRVCPRPYRMYRCIVRYGYKDV 435 (615)
Q Consensus 406 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~ 435 (615)
....++.+..+...+-|.|+|.++.++.+.
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 345668888888888899999999887554
No 7
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.22 E-value=1e+02 Score=24.32 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=18.7
Q ss_pred CCchhHHHHHHHHHHHHHhhhc
Q 007161 437 RDDGDFENQLIQSIAEFIQMEA 458 (615)
Q Consensus 437 ~~~~~f~~~l~~~l~~fI~~e~ 458 (615)
.++.+|.+++++.|.+|++++.
T Consensus 7 ~d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 7 GDQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHHHHHHcCcc
Confidence 3567899999999999999764
No 8
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=6.03 E-value=17 Score=24.63 Aligned_cols=26 Identities=15% Similarity=0.560 Sum_probs=0.0
Q ss_pred eeechhhHHHHHHHhheeEEecCchh
Q 007161 224 IYIPEINWILMILTLAITIGFQDTTL 249 (615)
Q Consensus 224 IYIP~vNw~Lmi~~i~vv~~F~~s~~ 249 (615)
|.||.+-|++-+.++.+.+.+-+|++
T Consensus 13 I~iPvv~wl~p~vvMglLFiyIEsea 38 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFLYIEGEA 38 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHCBC
T ss_pred hHHHHHHHHHHHHHHHHHheeeeccC
No 9
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]}
Probab=5.75 E-value=2.2e+02 Score=21.10 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred eEEEEEecCCCCcEEEEEEEE-eeec
Q 007161 410 RFLIGRVCPRPYRMYRCIVRY-GYKD 434 (615)
Q Consensus 410 R~~v~~~~~~~~~~~r~~~ry-Gy~d 434 (615)
+|.++.+.+ |-|.+.++| ||..
T Consensus 39 ~F~f~~l~~---G~Y~l~is~~Gy~~ 61 (79)
T d1vlfn1 39 EFKFDALDN---GEYTVEIDADGKSY 61 (79)
T ss_dssp EEEEEEECS---EEEEEEEEETTEEE
T ss_pred cEEEEecCC---CCEEEEEEEecccc
No 10
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.73 E-value=1.6e+02 Score=21.53 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=0.0
Q ss_pred ceEEEEEEEEEecccccCCCceEEEEEecCCCCcEEEEEEE
Q 007161 389 HKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVR 429 (615)
Q Consensus 389 h~~~vfv~i~~~~~P~V~~~eR~~v~~~~~~~~~~~r~~~r 429 (615)
.++.|+-.=......++..+..+.+..+...+.|.|+|++.
T Consensus 35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 75 (91)
T d1cs6a3 35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75 (91)
T ss_dssp CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEE
Done!