BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007162
(615 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4K9V4|LOLA_PSEF5 Outer-membrane lipoprotein carrier protein OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=lolA PE=3
SV=1
Length = 207
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 43/158 (27%)
Query: 284 GVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLIS 343
G+ + H+D Q++ +V +K SLW +LE+V K ++ A+ L+S
Sbjct: 68 GLFYWHTDAPQEQLMVSDGQKVSLWDPDLEQVTIKKLDQRLTQTPAL----------LLS 117
Query: 344 DDPAKIPESLG----SAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNL 399
D +KI ES AG + + +L P RDTL++ L + + +
Sbjct: 118 GDVSKISESFDITSKEAGGVMDF---------------TLKPKTRDTLFDSLRLSFRNGM 162
Query: 400 RSRLQTVN--------------GKEELPAFQIKAEMEK 423
+ +Q ++ E +PA + K ++ K
Sbjct: 163 INDMQLIDSVGQRTNILFTGVKANEAIPASKFKFDIPK 200
>sp|Q6HA09|ASTL_MOUSE Astacin-like metalloendopeptidase OS=Mus musculus GN=Astl PE=1 SV=3
Length = 435
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 400 RSRLQTVNGKEELPAFQIKAEMEKTLQWLVPVATNTTKAHQG---FGWVGE------WAN 450
R R VN E LP F+I ++ LVP ++ H G F W G+ W +
Sbjct: 199 RDRYIQVNWNEILPGFEINFIKSRSTNMLVPYDYSSVM-HYGRFAFSWRGQPTIIPLWTS 257
Query: 451 TGHEFGKGTATNDNLTRLQTLYHADKQKTDKY 482
+ H + + ++TR+ LY+ + D +
Sbjct: 258 SVHIGQRWNLSTSDITRVCRLYNCSRSVPDSH 289
>sp|Q48H71|LOLA_PSE14 Outer-membrane lipoprotein carrier protein OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=lolA PE=3
SV=1
Length = 207
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 289 HSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAK 348
H+D Q++ +V KK SLW +LE+V K ++ A+ L+S D +K
Sbjct: 73 HTDAPQEQLMVSDGKKVSLWDPDLEQVTIKKLDQRLTQTPAL----------LLSGDVSK 122
Query: 349 IPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVN 407
I ES A +I+ + L P +DTL++ L + + + + +Q ++
Sbjct: 123 ISESFDIT--AKEAGGVIDFV---------LKPKTKDTLFDSLRLSFRNGIINDMQLID 170
>sp|Q9Z3U0|LOLA_PSEU2 Outer-membrane lipoprotein carrier protein OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=lolA PE=3 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 289 HSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAK 348
H+D Q++ +V KK SLW +LE+V K ++ A+ L+S D +K
Sbjct: 73 HTDAPQEQLMVSDGKKVSLWDPDLEQVTIKKLDQRLTQTPAL----------LLSGDVSK 122
Query: 349 IPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVN 407
I ES A +I+ +L P +DTL++ L + + + + +Q ++
Sbjct: 123 ISESFDIT--AKEAGGVID---------FTLKPKTKDTLFDSLRLSFRNGIINDMQLID 170
>sp|Q9SFW8|NLP5_ARATH Protein NLP5 OS=Arabidopsis thaliana GN=NLP5 PE=2 SV=1
Length = 808
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 379 LPPNMRDT-----LYNGLPATVKMNLRSRLQTVNGKE--ELPAFQIKAEMEKTLQWLVPV 431
LP N RD + N L +T+ ++ L+TV KE E + +EK + +P
Sbjct: 426 LPKNCRDIEEQRKMLNAL-STIMAHVPRSLRTVTQKELEEEGDSMVSEVIEKGVT--LPK 482
Query: 432 ATNTTKAHQGF-----------GWVGEWANTGHEFGKGTATNDNLT 466
NTT+ HQ G E G E+GKG + N+N T
Sbjct: 483 IENTTEVHQSISTPQNVGLVFDGGTTEMGELGSEYGKGVSVNENNT 528
>sp|Q88FS9|LOLA_PSEPK Outer-membrane lipoprotein carrier protein OS=Pseudomonas putida
(strain KT2440) GN=lolA PE=3 SV=2
Length = 207
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 29/131 (22%)
Query: 281 KGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRT 340
K G+ + H+D Q++ +V K +LW +LE+ K +++ A+
Sbjct: 65 KRPGLFYWHTDAPQEQVVVSDGKNVTLWDPDLEQATIKKLDVRLNQTPAL---------- 114
Query: 341 LISDDPAKIPESLGSA----GLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVK 396
L+S D +KI +S A G + + +L P +DTL++ L + +
Sbjct: 115 LLSGDVSKISQSFDIASKEQGEVMDF---------------TLKPKTKDTLFDSLRVSFR 159
Query: 397 MNLRSRLQTVN 407
L + +Q ++
Sbjct: 160 KGLINDMQLID 170
>sp|B0KLX1|LOLA_PSEPG Outer-membrane lipoprotein carrier protein OS=Pseudomonas putida
(strain GB-1) GN=lolA PE=3 SV=1
Length = 207
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 29/131 (22%)
Query: 281 KGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRT 340
K G+ + H+D Q++ +V K +LW +LE+ K +++ A+
Sbjct: 65 KRPGLFYWHTDAPQEQVVVSDGKNVTLWDPDLEQATIKKLDVRLNQTPAL---------- 114
Query: 341 LISDDPAKIPESLGSA----GLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVK 396
L+S D +KI +S A G + + +L P +DTL++ L + +
Sbjct: 115 LLSGDVSKISQSFDIASKEQGEVMDF---------------TLKPKTKDTLFDSLRVSFR 159
Query: 397 MNLRSRLQTVN 407
L + +Q ++
Sbjct: 160 KGLINDMQLID 170
>sp|A5W1H3|LOLA_PSEP1 Outer-membrane lipoprotein carrier protein OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=lolA PE=3 SV=1
Length = 207
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 29/131 (22%)
Query: 281 KGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRT 340
K G+ + H+D Q++ +V K +LW +LE+ K +++ A+
Sbjct: 65 KRPGLFYWHTDAPQEQVVVSDGKNVTLWDPDLEQATIKKLDVRLNQTPAL---------- 114
Query: 341 LISDDPAKIPESLGSA----GLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVK 396
L+S D +KI +S A G + + +L P +DTL++ L + +
Sbjct: 115 LLSGDVSKISQSFDIASKEQGEVMDF---------------TLKPKTKDTLFDSLRVSFR 159
Query: 397 MNLRSRLQTVN 407
L + +Q ++
Sbjct: 160 KGLINDMQLID 170
>sp|Q87ZS6|LOLA_PSESM Outer-membrane lipoprotein carrier protein OS=Pseudomonas syringae
pv. tomato (strain DC3000) GN=lolA PE=3 SV=1
Length = 207
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 289 HSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAK 348
H+D Q++ +V KK SLW +LE+V K ++ A+ L+S D +K
Sbjct: 73 HTDAPQEQLMVSDGKKVSLWDPDLEQVTIKKLDQRLTQTPAL----------LLSGDVSK 122
Query: 349 IPESLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVN 407
I ES A +I+ + L P +DTL++ L + + + + +Q ++
Sbjct: 123 ISESFDIT--AKEAGGVIDFM---------LKPKTKDTLFDSLRLSFRNGIINDMQLID 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,697,333
Number of Sequences: 539616
Number of extensions: 9472351
Number of successful extensions: 22038
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 22027
Number of HSP's gapped (non-prelim): 73
length of query: 615
length of database: 191,569,459
effective HSP length: 124
effective length of query: 491
effective length of database: 124,657,075
effective search space: 61206623825
effective search space used: 61206623825
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)