Query 007162
Match_columns 615
No_of_seqs 120 out of 145
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 19:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05003 DUF668: Protein of un 100.0 9.8E-44 2.1E-48 307.7 8.2 86 352-437 1-89 (89)
2 PF11961 DUF3475: Domain of un 99.9 2.5E-27 5.5E-32 191.0 3.9 57 132-188 1-57 (57)
3 TIGR02865 spore_II_E stage II 62.3 39 0.00085 40.2 9.6 175 89-269 190-403 (764)
4 PF05527 DUF758: Domain of unk 50.3 2.9E+02 0.0064 28.1 12.2 57 184-270 34-94 (186)
5 PF05597 Phasin: Poly(hydroxya 26.4 3.3E+02 0.0073 26.1 7.8 87 215-304 38-130 (132)
6 KOG3498 Preprotein translocase 25.3 54 0.0012 28.4 2.1 30 187-216 6-35 (67)
7 TIGR01834 PHA_synth_III_E poly 23.8 5.2E+02 0.011 28.4 9.6 48 257-305 263-311 (320)
8 PF05983 Med7: MED7 protein; 23.3 3.5E+02 0.0077 26.5 7.6 66 164-250 52-117 (162)
9 PRK04778 septation ring format 22.1 3.6E+02 0.0079 31.0 8.5 39 233-271 201-244 (569)
10 PF09139 Mmp37: Mitochondrial 21.4 1.2E+02 0.0027 33.1 4.4 50 378-427 241-302 (330)
11 PF11598 COMP: Cartilage oligo 21.3 1E+02 0.0022 24.8 2.8 20 285-304 17-36 (45)
12 PF13094 CENP-Q: CENP-Q, a CEN 20.9 3.2E+02 0.0069 26.1 6.6 52 249-305 33-84 (160)
13 COG2443 Sss1 Preprotein transl 20.7 61 0.0013 27.9 1.6 31 185-215 4-34 (65)
14 PRK03333 coaE dephospho-CoA ki 20.6 1.2E+02 0.0026 33.3 4.1 72 362-437 131-203 (395)
15 KOG4552 Vitamin-D-receptor int 20.6 8.6E+02 0.019 25.8 9.9 71 236-317 56-133 (272)
16 PF07793 DUF1631: Protein of u 20.2 1.4E+03 0.031 26.8 14.6 241 154-431 323-600 (729)
No 1
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=9.8e-44 Score=307.70 Aligned_cols=86 Identities=56% Similarity=0.893 Sum_probs=84.8
Q ss_pred CcchhhhhhhHHHHHHHHHHhhhCCCCCCCchhHHhhccCchHHHHHHhhhcccccCC---CCCcHHHHHHHHHHHhhhh
Q 007162 352 SLGSAGLALHYANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGK---EELPAFQIKAEMEKTLQWL 428 (615)
Q Consensus 352 TLG~AgLALHYANIIi~IEklvs~P~~v~~~aRD~LYqmLP~sIRsaLRsrLr~~~~~---de~~a~ewk~amekiL~WL 428 (615)
|||+|||||||||||+|||+|+++|++||+|+||+||||||++||++||+|||++.+. |+.+++||+++|+|||+||
T Consensus 1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~~aRD~LY~mLP~~ir~aLr~kL~~~~~~~~~d~~~a~~~~~~m~kiL~WL 80 (89)
T PF05003_consen 1 TLGGAGLALHYANVIIQIEKLVSRPSSVPPNARDDLYQMLPPSIRSALRSKLRSYWKKAIYDELLAAEWKDAMEKILEWL 80 (89)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCcccCCchHHHHHHhhCcHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999988 9999999999999999999
Q ss_pred hhhhhhhhc
Q 007162 429 VPVATNTTK 437 (615)
Q Consensus 429 aPmAhNTir 437 (615)
+||||||+|
T Consensus 81 ~P~A~nt~r 89 (89)
T PF05003_consen 81 APMAHNTIR 89 (89)
T ss_pred HHHHHhccC
Confidence 999999997
No 2
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=99.93 E-value=2.5e-27 Score=191.04 Aligned_cols=57 Identities=61% Similarity=0.780 Sum_probs=56.4
Q ss_pred eehHHHHHHHHHHHhhhhcCCHHHHHHHhhhhccccccccccccCHHHHHHHHHHHH
Q 007162 132 ILAFEVANTIAKGANLFQSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADK 188 (615)
Q Consensus 132 ILAFEVAntmsK~~~L~~SLSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk 188 (615)
||||||||||+|++||||||||++|.+||+||++|||||+|||+|++|||+||||||
T Consensus 1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~ 57 (57)
T PF11961_consen 1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK 57 (57)
T ss_pred CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999996
No 3
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=62.35 E-value=39 Score=40.19 Aligned_cols=175 Identities=19% Similarity=0.208 Sum_probs=97.3
Q ss_pred cccccccccchhhhhhhcccccccCCCC--------CCcccccccCCCeeE-eehHHHHHHHHHHHh-----hhhcCCHH
Q 007162 89 GRGGAAGLAMTVDVLDALGSSMSSLNAS--------SGFISGVTSKGNKIS-ILAFEVANTIAKGAN-----LFQSLSEE 154 (615)
Q Consensus 89 gra~~~gl~kavevldtlgssm~~l~~~--------~gf~sg~~~kg~kIg-ILAFEVAntmsK~~~-----L~~SLSd~ 154 (615)
+-+|-+|+|.|+.|.--+-.|+++.+.- +|+.+|.-+++.|+| +++|=+++++..+.. +...|-|-
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~~~~e~ 269 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSLALYEA 269 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 3456678899999998888888765332 377889988888865 689999998875542 11111111
Q ss_pred HH-------------HHHhhhhccccccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHH-hhccCCCC----ccCch
Q 007162 155 NI-------------QFLKTEVLHSSGVQELVSTDMKEL--LRIAAADKREEFDVFLREVIR-FGNLCKDP----QWHNL 214 (615)
Q Consensus 155 ~I-------------~~Lr~evL~SeGVq~LVS~D~~~L--L~LA~AEk~eeL~~~A~~VaR-lG~rC~DP----~whnf 214 (615)
=| .++...+ + |-+.-....+.+. ++=..++|++++..+=.++++ |++.|.++ .=...
T Consensus 270 ~ia~~lFll~P~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~rl~~~a~~~~~Ls~tf~~~~~~~~~~~~~~~~ 346 (764)
T TIGR02865 270 LIATLLFLLIPNKIYKKLERYL-D--GERKQPDLQEDYMRKVREIAAEKLEEFSEVFRELSNTFVEALASNEKLTMKRKS 346 (764)
T ss_pred HHHHHHHHHhhHHHHHHHHhhC-C--CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhH
Confidence 11 1222221 1 2222111122222 344455666665555444444 43344432 12357
Q ss_pred hHHHhhhhhhhcC-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007162 215 DRYFSNLKSEYLN-----HRQPRGEAETRMKELTTLAQHTSELYHEYNALDRFELDYRRK 269 (615)
Q Consensus 215 dr~F~~l~~~~~~-----~~~~~k~ae~~m~km~rlV~~Ta~LY~ELeaL~~lEq~~rrk 269 (615)
+.+|+.+....-. ...|.++.+...+.|..+.+...+ +.+++ .++.+.++++
T Consensus 347 ~~~~~~v~~~vC~~C~~~~~CW~~~~~~Ty~~~~~l~~~~e~-~~~~~--~~~p~~~~~~ 403 (764)
T TIGR02865 347 SYLLENLAERVCQSCNMKHRCWKREFDYTYSAMEELIENLEE-KKDPN--SKLPDEFERK 403 (764)
T ss_pred HHHHHHHhhchhhCCCCCchhhCcchHHHHHHHHHHHHHHHh-cCCch--hhhhHHHHHh
Confidence 7788877643322 233667888888887777766544 33333 5555655443
No 4
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=50.33 E-value=2.9e+02 Score=28.11 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccCchhHHHhhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH----HhHH
Q 007162 184 AAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELTTLAQHTSELYHE----YNAL 259 (615)
Q Consensus 184 A~AEk~eeL~~~A~~VaRlG~rC~DP~whnfdr~F~~l~~~~~~~~~~~k~ae~~m~km~rlV~~Ta~LY~E----LeaL 259 (615)
..+|.+++|-.++.++.+ .+++|++.++.+.+.|-...-||+- -|.|
T Consensus 34 tsselLD~ly~l~K~~t~-----------------------------~kkeA~ki~KniIKi~vKigvl~rn~qf~~eEl 84 (186)
T PF05527_consen 34 TSSELLDELYRLLKEYTG-----------------------------NKKEAEKIIKNIIKIVVKIGVLYRNNQFSDEEL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS------------------------------HHHHHHHHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred hHHHHHHHHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHH
Confidence 356667777777776542 5799999999999999999999962 3344
Q ss_pred HHHHHHHHHHH
Q 007162 260 DRFELDYRRKL 270 (615)
Q Consensus 260 ~~lEq~~rrk~ 270 (615)
+.+|. +|+|+
T Consensus 85 ~~~~~-fr~k~ 94 (186)
T PF05527_consen 85 ALAEK-FRKKF 94 (186)
T ss_dssp HHHHH-HHHHH
T ss_pred HHHHH-HHHHH
Confidence 44444 44444
No 5
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=26.40 E-value=3.3e+02 Score=26.11 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=47.9
Q ss_pred hHHHhhhhh-hhcCCCCchhHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh-ccCCCCCCCcchHHH
Q 007162 215 DRYFSNLKS-EYLNHRQPRGEAETRMKEL----TTLAQHTSELYHEYNALDRFELDYRRKLEEL-DSLNLPRKGEGVTFL 288 (615)
Q Consensus 215 dr~F~~l~~-~~~~~~~~~k~ae~~m~km----~rlV~~Ta~LY~ELeaL~~lEq~~rrk~~~~-~~~~~~~~g~~l~~l 288 (615)
..+|+.|+. |..-....++.++..+... ...|..... +..+.++++|+.+-...... ..+..|.+ .-+..|
T Consensus 38 ~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~dklE~~fd~rV~~aL~rLgvPs~-~dv~~L 114 (132)
T PF05597_consen 38 SKVFEALVKEGEKLEKKTRKKAEEQVEEARDQVKSRVDDVKE--RATGQWDKLEQAFDERVARALNRLGVPSR-KDVEAL 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHH
Confidence 357888874 3332222223333333222 233322222 23566788888886665433 34445543 457888
Q ss_pred HHHHHHHHHHHHhhhh
Q 007162 289 HSDLKQQRKLVRSLKK 304 (615)
Q Consensus 289 q~elk~QRk~Vk~LKk 304 (615)
..+|..--.+|..|..
T Consensus 115 ~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 115 SARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888877754
No 6
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.25 E-value=54 Score=28.41 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCccCchhH
Q 007162 187 DKREEFDVFLREVIRFGNLCKDPQWHNLDR 216 (615)
Q Consensus 187 Ek~eeL~~~A~~VaRlG~rC~DP~whnfdr 216 (615)
.+.|-++.|+++-.||-+||.-|.-..|-.
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~k 35 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTK 35 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 456778999999999999999996655544
No 7
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.77 E-value=5.2e+02 Score=28.43 Aligned_cols=48 Identities=38% Similarity=0.557 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHhh-ccCCCCCCCcchHHHHHHHHHHHHHHHhhhhc
Q 007162 257 NALDRFELDYRRKLEEL-DSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKK 305 (615)
Q Consensus 257 eaL~~lEq~~rrk~~~~-~~~~~~~~g~~l~~lq~elk~QRk~Vk~LKk~ 305 (615)
+++-++-+.+++..+.. .+++.|.+. -+.++++.|-.=|++||+||+.
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRs-ElDe~~krL~ELrR~vr~L~k~ 311 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRS-ELDEAHQRIQQLRREVKSLKKR 311 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333222 456666543 4788888888888888888864
No 8
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=23.32 E-value=3.5e+02 Score=26.48 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=28.1
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccCchhHHHhhhhhhhcCCCCchhHHHHHHHHHH
Q 007162 164 LHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCKDPQWHNLDRYFSNLKSEYLNHRQPRGEAETRMKELT 243 (615)
Q Consensus 164 L~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~DP~whnfdr~F~~l~~~~~~~~~~~k~ae~~m~km~ 243 (615)
|.+.|+++|-..+.+ .-.-.|+++||+.+.++.- .||-.+++.+.... ...+++++.|.
T Consensus 52 L~~~gi~qLy~~~~~---~~~~~d~~~eLkkL~~sll-----------~nfleLl~~l~~~P-------~~~~~ki~~i~ 110 (162)
T PF05983_consen 52 LESQGIRQLYPPDDD---PSPSVDRKKELKKLNKSLL-----------LNFLELLDILSKNP-------SQYERKIEDIR 110 (162)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH-----------HHHHHHTTSS---C-------CCHHHHHHHHH
T ss_pred chhccccccCCCccc---cCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHHhCC-------ccHHHHHHHHH
Confidence 677888888877722 2345789999999998876 23333333333222 33455777777
Q ss_pred HHHHHHH
Q 007162 244 TLAQHTS 250 (615)
Q Consensus 244 rlV~~Ta 250 (615)
.+..+--
T Consensus 111 ~L~~Nmh 117 (162)
T PF05983_consen 111 LLFINMH 117 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765543
No 9
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.12 E-value=3.6e+02 Score=30.99 Aligned_cols=39 Identities=23% Similarity=0.441 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHH
Q 007162 233 GEAETRMKELTTLAQHTSELYHEYNA-----LDRFELDYRRKLE 271 (615)
Q Consensus 233 k~ae~~m~km~rlV~~Ta~LY~ELea-----L~~lEq~~rrk~~ 271 (615)
.+++..+..|+.++..--.||+++.. |++|+.+|+++..
T Consensus 201 ~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 201 DQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVE 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56677788888888888888888754 8999999966653
No 10
>PF09139 Mmp37: Mitochondrial matrix Mmp37; InterPro: IPR015222 MMp37 is a mitochondrial matrix protein that functions in the translocation of proteins across the mitochondrial inner membrane [].
Probab=21.39 E-value=1.2e+02 Score=33.08 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=38.3
Q ss_pred CCCCchhHHhhccCchHHHHHHhhhccccc------------CCCCCcHHHHHHHHHHHhhh
Q 007162 378 SLPPNMRDTLYNGLPATVKMNLRSRLQTVN------------GKEELPAFQIKAEMEKTLQW 427 (615)
Q Consensus 378 ~v~~~aRD~LYqmLP~sIRsaLRsrLr~~~------------~~de~~a~ewk~amekiL~W 427 (615)
...|++|-.|-..||.+++..|..+..... ..|+.....++.++.+|-.|
T Consensus 241 d~s~~~~~~~l~~LP~~~~~~l~~~~~~~~~~~d~~~~~~~ia~d~~~~~~v~~aI~~IV~~ 302 (330)
T PF09139_consen 241 DKSPSARAHLLRRLPKTLRSRLYRQYDRKGRNRDGEEFLRAIASDPDLREVVRRAIRRIVRR 302 (330)
T ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHhccCCCccchhHHHHHHhcChhHHHHHHHHHHhHhhh
Confidence 467889999999999999999998876422 23555577777888877766
No 11
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=21.34 E-value=1e+02 Score=24.84 Aligned_cols=20 Identities=35% Similarity=0.305 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHhhhh
Q 007162 285 VTFLHSDLKQQRKLVRSLKK 304 (615)
Q Consensus 285 l~~lq~elk~QRk~Vk~LKk 304 (615)
+.+++..++.|++|+..||.
T Consensus 17 l~elk~~l~~Q~kE~~~LRn 36 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRN 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999985
No 12
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.90 E-value=3.2e+02 Score=26.06 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhc
Q 007162 249 TSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKK 305 (615)
Q Consensus 249 Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~g~~l~~lq~elk~QRk~Vk~LKk~ 305 (615)
-..|..+++.|+.|+..+++....-+. ..+.+..|++.++.+..+++...++
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~-----d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALER-----DYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445668899999999999665433331 2357888998888888887776554
No 13
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=20.70 E-value=61 Score=27.95 Aligned_cols=31 Identities=32% Similarity=0.620 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCccCchh
Q 007162 185 AADKREEFDVFLREVIRFGNLCKDPQWHNLD 215 (615)
Q Consensus 185 ~AEk~eeL~~~A~~VaRlG~rC~DP~whnfd 215 (615)
.-++.|++..|-++-.|+=++|+-|.|..|-
T Consensus 4 ~~~~~e~~~~~lke~~rvl~~arKP~~eEy~ 34 (65)
T COG2443 4 MMDKPEELREFLKEYRRVLKVARKPDWEEYS 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3578899999999999999999999996654
No 14
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=20.63 E-value=1.2e+02 Score=33.31 Aligned_cols=72 Identities=11% Similarity=0.107 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhCCCCCCCchhHHhhccCchHHHHHHhhhcccccCCCCCcHHHHHHHHHHHh-hhhhhhhhhhhc
Q 007162 362 YANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTL-QWLVPVATNTTK 437 (615)
Q Consensus 362 YANIIi~IEklvs~P~~v~~~aRD~LYqmLP~sIRsaLRsrLr~~~~~de~~a~ewk~amekiL-~WLaPmAhNTir 437 (615)
+|..=++++++..+-..-..++...+..-.|..-| ..+-.+......+.++....+.+++ .||.|+||||--
T Consensus 131 ~ap~e~ri~Rl~~rRg~s~~~a~~ri~~Q~~~e~k----~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~~ 203 (395)
T PRK03333 131 DADVEVRVRRLVEQRGMAEADARARIAAQASDEQR----RAVADVWLDNSGTPDELVEAVRALWADRLLPFAHNLRA 203 (395)
T ss_pred ECCHHHHHHHHHhcCCCCHHHHHHHHHhcCChHHH----HHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 45666777887764322222222223222332222 2222333345556778877776654 899999999964
No 15
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=20.62 E-value=8.6e+02 Score=25.79 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHH------HHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccc
Q 007162 236 ETRMKELTTLAQHTSELYHEYNALD-RFE------LDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKKKSLW 308 (615)
Q Consensus 236 e~~m~km~rlV~~Ta~LY~ELeaL~-~lE------q~~rrk~~~~~~~~~~~~g~~l~~lq~elk~QRk~Vk~LKk~SLW 308 (615)
+..+++|+++|-.-++..|+|+.|. ..| |.+++.+.+ .-.+|-..+.+-+|..++.++.-+-
T Consensus 56 d~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~-----------aE~iLtta~fqA~qKLksi~~A~kr 124 (272)
T KOG4552|consen 56 DDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKS-----------AEVILTTACFQANQKLKSIKEAEKR 124 (272)
T ss_pred cHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3467899999999888888888774 223 222222211 2246677777888888888887776
Q ss_pred cccHHHHHH
Q 007162 309 SRNLEEVME 317 (615)
Q Consensus 309 srt~d~vVe 317 (615)
--+-|+++.
T Consensus 125 pvsSEelIK 133 (272)
T KOG4552|consen 125 PVSSEELIK 133 (272)
T ss_pred CCCHHHHHH
Confidence 666666554
No 16
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=20.21 E-value=1.4e+03 Score=26.77 Aligned_cols=241 Identities=18% Similarity=0.246 Sum_probs=121.4
Q ss_pred HHHHHHhhhhcc----ccccccccccCHHHHHHHHHH---HH----------HHHHHHHHHHHHHhhccCCCCcc-----
Q 007162 154 ENIQFLKTEVLH----SSGVQELVSTDMKELLRIAAA---DK----------REEFDVFLREVIRFGNLCKDPQW----- 211 (615)
Q Consensus 154 ~~I~~Lr~evL~----SeGVq~LVS~D~~~LL~LA~A---Ek----------~eeL~~~A~~VaRlG~rC~DP~w----- 211 (615)
..+..++..++. .+|-+.-++..+...+.|+.- .+ +.-+.++---|.|+. =.||.+
T Consensus 323 ~~~~~~~~~ll~~l~~~~~~~~~l~~~d~~~idlV~~lF~~il~d~~l~~~~k~li~rLqiP~Lk~A--l~D~~FF~~~~ 400 (729)
T PF07793_consen 323 SDLRQLLQQLLEQLRSGEGPQAALSPEDEDTIDLVAMLFDFILDDPRLPPPVKALIARLQIPVLKVA--LLDPSFFSDRQ 400 (729)
T ss_pred ccHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHHHHH--hcCccccCCCC
Confidence 467788888876 467777777777766666652 22 222222222222221 145654
Q ss_pred CchhHHHhhhhhhhcCCCCchh-HHHHHHHHHHHHHHH-----------HHHHHHHHhHHHHHHHHHHHHHHhhccCCCC
Q 007162 212 HNLDRYFSNLKSEYLNHRQPRG-EAETRMKELTTLAQH-----------TSELYHEYNALDRFELDYRRKLEELDSLNLP 279 (615)
Q Consensus 212 hnfdr~F~~l~~~~~~~~~~~k-~ae~~m~km~rlV~~-----------Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~ 279 (615)
|.-.++.+.|..-...+..... .-....++|+..|+. -.++++|++.+- ...+++.+..+
T Consensus 401 HPaR~LLn~la~~~~~~~~~~~~~~~~l~~~i~~~V~~i~~~f~~d~~vf~~~l~el~~~~---~~~~~~~~~~~----- 472 (729)
T PF07793_consen 401 HPARRLLNRLAQAGLGWDEEDDPADDPLYQKIEEVVDRILQEFEGDPAVFEELLQELEAFL---EQERRRAQRNE----- 472 (729)
T ss_pred ChHHHHHHHHHHHhcCCCccCcchhhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH---HHHHHHHHHHH-----
Confidence 7777777777643322221111 122333344444332 233344433322 22222221111
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcchhhh
Q 007162 280 RKGEGVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVE-IAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGL 358 (615)
Q Consensus 280 ~~g~~l~~lq~elk~QRk~Vk~LKk~SLWsrt~d~vVekLvr-iV~~i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgL 358 (615)
++-.....-++++..-|++|...=..-|=.+.+..+|..+.+ .-.-++..++.-.|..+.
T Consensus 473 ~r~~~~~~g~er~~~Ar~~v~~~l~~~l~~~~~P~~v~~fL~~~W~~vL~~~~lr~G~~s~------------------- 533 (729)
T PF07793_consen 473 RRAIEAEEGRERLEQARQQVAQELNERLAGRQLPEVVRDFLDGGWADVLVLALLREGEDSE------------------- 533 (729)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcH-------------------
Confidence 011123455666777777777655555555555564444433 444444445554443321
Q ss_pred hhhHHHHHHHHHHhhh--CCCCCCCchhHHhhccCchHHHHHHhhhcccccCCCCCcHHHHHHHHHHHhhhhhhh
Q 007162 359 ALHYANIINQIDNIVS--RPSSLPPNMRDTLYNGLPATVKMNLRSRLQTVNGKEELPAFQIKAEMEKTLQWLVPV 431 (615)
Q Consensus 359 ALHYANIIi~IEklvs--~P~~v~~~aRD~LYqmLP~sIRsaLRsrLr~~~~~de~~a~ewk~amekiL~WLaPm 431 (615)
.+-.-+..++.|+- .|.. .++.|+.|++++|.=++ .||.-|..... ...+....++.+..++.-.
T Consensus 534 --~w~~~~~~~~~Liws~~~~~-~~~~r~~l~~~lp~Ll~-~L~~gL~~i~~----~~~~~~~~~~~L~~~~~~~ 600 (729)
T PF07793_consen 534 --DWQEALALVDDLIWSVQPKD-DAEERARLVQLLPQLLQ-RLREGLASIGY----DPEERRAFLDELEDAHAAA 600 (729)
T ss_pred --HHHHHHHHHHHHHHHhCcCC-CcchHHHHHHHHHHHHH-HHHHHHHHcCC----CHHHHHHHHHHHHHHHHHH
Confidence 22233456677764 3443 67899999999986555 48888876543 2344445555555554443
Done!