Query 007162
Match_columns 615
No_of_seqs 120 out of 145
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 18:45:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 79.7 12 0.00041 41.5 11.6 87 285-390 119-205 (562)
2 3f4m_A Tumor necrosis factor, 58.6 1.3E+02 0.0043 28.7 13.3 121 231-374 29-157 (161)
3 3hls_A Guanylate cyclase solub 55.3 4.4 0.00015 33.1 1.5 16 385-400 49-64 (66)
4 3twe_A Alpha4H; unknown functi 54.5 17 0.0006 25.0 4.0 23 248-270 2-24 (27)
5 1deq_A Fibrinogen (alpha chain 49.1 1.9E+02 0.0064 31.1 12.8 43 362-405 181-223 (390)
6 4g63_A Cytosolic IMP-GMP speci 23.3 99 0.0034 33.6 5.9 10 233-242 325-334 (470)
7 3ssq_A Carbon dioxide concentr 18.1 63 0.0022 29.5 2.5 41 107-147 2-49 (122)
8 3b0c_W CENP-W, centromere prot 16.1 3.8E+02 0.013 21.7 6.6 53 149-205 3-55 (76)
9 3mp7_B Preprotein translocase 15.3 35 0.0012 27.6 0.1 32 186-217 2-33 (61)
10 2qqy_A Sigma B operon; dodecam 14.9 5.3E+02 0.018 21.6 9.8 55 234-304 85-139 (149)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.75 E-value=12 Score=41.53 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcchhhhhhhHHH
Q 007162 285 VTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYAN 364 (615)
Q Consensus 285 l~~lq~elk~QRk~Vk~LKk~SLWsrt~d~vVekLvriV~~i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgLALHYAN 364 (615)
+..|+.+|..|-+.++.|+. ++++.+.+|-|.=.-|-..|..-.|++...... .--| =-|-|
T Consensus 119 IqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~------~vd~------~sY~~ 180 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAR------EVDL------KDYED 180 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCC------CCCH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhccccccchhee------ecch------HHHHH
Confidence 45666666666666666664 466666666666666777788877876532211 1111 13999
Q ss_pred HHHHHHHhhhCCCCCCCchhHHhhcc
Q 007162 365 IINQIDNIVSRPSSLPPNMRDTLYNG 390 (615)
Q Consensus 365 IIi~IEklvs~P~~v~~~aRD~LYqm 390 (615)
+=-|+|.+. ...+.|...|..||.|
T Consensus 181 ~QKQLeQv~-a~dL~p~~~~q~Lp~l 205 (562)
T 3ghg_A 181 QQKQLEQVI-AKDLLPSRDRQHLPLI 205 (562)
T ss_dssp HHHHHHHHH-TTCCCCSCCCC-----
T ss_pred HHHHHHHHh-hcccCCccccccchhc
Confidence 999999976 5677888889899876
No 2
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=58.64 E-value=1.3e+02 Score=28.68 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHhh-ccCCCCCCCcchHHHHHHHHHHHHHHHhh
Q 007162 231 PRGEAETRMKELTTLAQHTSELYH-------EYNALDRFELDYRRKLEEL-DSLNLPRKGEGVTFLHSDLKQQRKLVRSL 302 (615)
Q Consensus 231 ~~k~ae~~m~km~rlV~~Ta~LY~-------ELeaL~~lEq~~rrk~~~~-~~~~~~~~g~~l~~lq~elk~QRk~Vk~L 302 (615)
.+++|++.++.+.+.|-...-||+ ||..+++|-+.++ .+.-. -+---..-.=....|..-|..-|+....|
T Consensus 29 nkkeA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~-~~amt~iSF~eVdfTfD~~~L~~~L~ec~~lL~~l 107 (161)
T 3f4m_A 29 SRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLR-QGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLEL 107 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH-HHHHHHHHHTSTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHH-HHHHHHhhhhccCccccHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999997 5555555444442 11110 00000000012345677777666666555
Q ss_pred hhcccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHhhh
Q 007162 303 KKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGSDGRTLISDDPAKIPESLGSAGLALHYANIINQIDNIVS 374 (615)
Q Consensus 303 Kk~SLWsrt~d~vVekLvriV~~i~~rI~~vFG~~~~~~~~~~~~~~~~TLG~AgLALHYANIIi~IEklvs 374 (615)
=+.-|=-++ +.||.+||+-..... +.... .++ -..-|--+|+--+++|+-
T Consensus 108 v~~HLT~KS---------------~~Ri~~vF~~f~~~e-fL~~l-----f~~-~~~~~L~kI~~~Lnklld 157 (161)
T 3f4m_A 108 VEHHLTPKS---------------HGRIRHVFDHFSDPG-LLTAL-----YGP-DFTQHLGKICDGLRKLLD 157 (161)
T ss_dssp HTTTSCHHH---------------HHHHHHHHHHHTCHH-HHHHH-----TSG-GGHHHHHHHHHHHHHHHH
T ss_pred HHhhCCcch---------------HHHHHHHHHHhCCHH-HHHHH-----hCc-HHHHHHHHHHHHHHHHHh
Confidence 444444333 678888886433210 00000 000 344566677777777653
No 3
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=55.28 E-value=4.4 Score=33.07 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=12.0
Q ss_pred HHhhccCchHHHHHHh
Q 007162 385 DTLYNGLPATVKMNLR 400 (615)
Q Consensus 385 D~LYqmLP~sIRsaLR 400 (615)
+=||+|||++|-..|+
T Consensus 49 ~LL~~mLP~~VA~~Lk 64 (66)
T 3hls_A 49 TLLYSVLPPSVANELR 64 (66)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHh
Confidence 5578888888877776
No 4
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=54.45 E-value=17 Score=24.97 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 007162 248 HTSELYHEYNALDRFELDYRRKL 270 (615)
Q Consensus 248 ~Ta~LY~ELeaL~~lEq~~rrk~ 270 (615)
+.-+||.|||.|.+-=..+|+|+
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 35689999998876555555554
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.11 E-value=1.9e+02 Score=31.08 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhCCCCCCCchhHHhhccCchHHHHHHhhhccc
Q 007162 362 YANIINQIDNIVSRPSSLPPNMRDTLYNGLPATVKMNLRSRLQT 405 (615)
Q Consensus 362 YANIIi~IEklvs~P~~v~~~aRD~LYqmLP~sIRsaLRsrLr~ 405 (615)
|-|+--|+|.+. .-.+.|.-.|-.|+.+=|..+|..+..+.|+
T Consensus 181 ye~qqKQL~qv~-a~~llP~~~~q~lp~LK~~p~kd~vP~~fKs 223 (390)
T 1deq_A 181 YKNQQKQLEQVI-AINLLPSRDIQYLPILKMSTITGPVPREFKS 223 (390)
T ss_pred HHHHHHHHHhhh-hhccccccccccccccccccccccCChhhcc
Confidence 557777777754 4556666556677776666666665555553
No 6
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=23.29 E-value=99 Score=33.61 Aligned_cols=10 Identities=10% Similarity=0.062 Sum_probs=5.6
Q ss_pred hHHHHHHHHH
Q 007162 233 GEAETRMKEL 242 (615)
Q Consensus 233 k~ae~~m~km 242 (615)
+|.+..++..
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666665443
No 7
>3ssq_A Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 2.20A {Thermosynechococcus elongatus}
Probab=18.12 E-value=63 Score=29.47 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=19.1
Q ss_pred ccccccCCCCCCcccccccCCCeeEee-------hHHHHHHHHHHHhh
Q 007162 107 GSSMSSLNASSGFISGVTSKGNKISIL-------AFEVANTIAKGANL 147 (615)
Q Consensus 107 gssm~~l~~~~gf~sg~~~kg~kIgIL-------AFEVAntmsK~~~L 147 (615)
|||--.-.+++|.+.....-+..|||+ |+|+|.+|.|.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~M~~AiGiIE~~g~~~aI~AADam~KAA~V 49 (122)
T 3ssq_A 2 GSSHHHHHHSSGLVPRGSHMPIAVGMIETRGFPAVVEAADAMVKAARV 49 (122)
T ss_dssp -------------------CCCEEEEEEEESHHHHHHHHHHHHHHSSE
T ss_pred CccccccccccCCCCccchhhcCEEEEEecCHHHHHHHHHHHhhhCCc
Confidence 455444556778776666666789998 88999999999874
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=16.14 E-value=3.8e+02 Score=21.67 Aligned_cols=53 Identities=4% Similarity=-0.050 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007162 149 QSLSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNL 205 (615)
Q Consensus 149 ~SLSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~r 205 (615)
+.|--..|.++=+++++. + -||+|-.+++..+|-|..+.|-.=|.+.++-.+|
T Consensus 3 ~~LP~A~V~rI~K~~~p~--~--~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~r 55 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPH--L--RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKS 55 (76)
T ss_dssp -CCCHHHHHHHHHHHCTT--C--EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccccHHHHHHHHhCCC--C--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 356777888988888873 2 4899999999999999999998888888765443
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=15.30 E-value=35 Score=27.63 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCccCchhHH
Q 007162 186 ADKREEFDVFLREVIRFGNLCKDPQWHNLDRY 217 (615)
Q Consensus 186 AEk~eeL~~~A~~VaRlG~rC~DP~whnfdr~ 217 (615)
++..|.++.|.++..|+=++|+-|.|..|-..
T Consensus 2 ~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~i 33 (61)
T 3mp7_B 2 AELQERIRHFWKESRRAFLVTKKPNWATYKRA 33 (61)
T ss_dssp ------CTTHHHHHTHHHHHSCCCCTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45678888999999999999999999887654
No 10
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=14.86 E-value=5.3e+02 Score=21.63 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 007162 234 EAETRMKELTTLAQHTSELYHEYNALDRFELDYRRKLEELDSLNLPRKGEGVTFLHSDLKQQRKLVRSLKK 304 (615)
Q Consensus 234 ~ae~~m~km~rlV~~Ta~LY~ELeaL~~lEq~~rrk~~~~~~~~~~~~g~~l~~lq~elk~QRk~Vk~LKk 304 (615)
.....++.+...=..+...|.++-.+++-+.|+ .....|+.-+..+.+++..|+.
T Consensus 85 ~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~----------------~t~~~l~~~~~eee~h~~~l~~ 139 (149)
T 2qqy_A 85 DVREMLEYARQSEYETIKRYEKRKEQAANLNMT----------------ELVVKLEDMIADETNHMEELDR 139 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556677777777666655444 1234566666667777666643
Done!