Query 007162
Match_columns 615
No_of_seqs 120 out of 145
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 18:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007162.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007162hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jfia_ a.22.1.3 (A:) Negative 24.7 72 0.0052 23.4 5.8 50 157-207 6-55 (66)
2 d2bdea1 c.108.1.23 (A:2-459) C 20.0 72 0.0052 32.1 6.5 36 233-268 324-359 (458)
3 d1vcsa1 a.47.2.1 (A:8-96) Vesi 16.5 27 0.002 27.8 1.8 45 362-406 7-72 (89)
4 d2pjqa1 a.211.1.1 (A:1-215) Un 14.2 61 0.0044 28.8 3.8 67 181-247 117-206 (215)
5 d1htaa_ a.22.1.2 (A:) Archaeal 14.1 1.7E+02 0.013 21.0 5.8 52 151-207 4-55 (68)
6 d1ku5a_ a.22.1.2 (A:) Archaeal 13.5 1E+02 0.0073 22.4 4.3 43 164-207 12-54 (66)
7 d1r6ta1 a.16.1.3 (A:7-60) N-te 13.3 94 0.0068 22.9 3.9 49 284-336 2-50 (54)
8 d1ojta2 c.3.1.5 (A:276-400) Di 13.0 35 0.0026 27.7 1.6 38 80-119 24-61 (125)
9 d1v59a2 c.3.1.5 (A:161-282) Di 11.6 34 0.0024 27.5 1.0 37 82-120 23-59 (122)
10 d1zaka1 c.37.1.1 (A:3-127,A:15 11.5 2.7E+02 0.019 22.5 7.0 50 285-334 130-186 (189)
No 1
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.72 E-value=72 Score=23.36 Aligned_cols=50 Identities=12% Similarity=-0.008 Sum_probs=37.4
Q ss_pred HHHhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007162 157 QFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (615)
Q Consensus 157 ~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (615)
.|.|. |+++..=-..||.|--+++.-|+-....+|-.-|..+++-.+|..
T Consensus 6 srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 6 ARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred HHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44444 444333335899999999999999999999999999999877654
No 2
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Probab=20.02 E-value=72 Score=32.11 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007162 233 GEAETRMKELTTLAQHTSELYHEYNALDRFELDYRR 268 (615)
Q Consensus 233 k~ae~~m~km~rlV~~Ta~LY~ELeaL~~lEq~~rr 268 (615)
+|.|..++.+.+-......|-.-+..+.+++|.+..
T Consensus 324 ~ELe~Ei~~~~~~~~~~~~l~~l~~~~~~l~~~~~~ 359 (458)
T d2bdea1 324 EELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVD 359 (458)
T ss_dssp TTHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 666666655444333333332223334455665533
No 3
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.48 E-value=27 Score=27.76 Aligned_cols=45 Identities=18% Similarity=0.442 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhCCCCCCCchhHHhh---------------------ccCchHHHHHHhhhcccc
Q 007162 362 YANIINQIDNIVSRPSSLPPNMRDTLY---------------------NGLPATVKMNLRSRLQTV 406 (615)
Q Consensus 362 YANIIi~IEklvs~P~~v~~~aRD~LY---------------------qmLP~sIRsaLRsrLr~~ 406 (615)
|+.+.-.|..-+.+-...+-+.|..+. +.+|++.|+.+.+|||.|
T Consensus 7 y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Y 72 (89)
T d1vcsa1 7 FAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSY 72 (89)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
No 4
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=14.24 E-value=61 Score=28.76 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHh---hccCCCCccC----------------chhHHHhhhhh--hhcCCCCchhHHHH
Q 007162 181 LRIAAADKREEFDV--FLREVIRF---GNLCKDPQWH----------------NLDRYFSNLKS--EYLNHRQPRGEAET 237 (615)
Q Consensus 181 L~LA~AEk~eeL~~--~A~~VaRl---G~rC~DP~wh----------------nfdr~F~~l~~--~~~~~~~~~k~ae~ 237 (615)
--+--||+++.|-. +|+..+-- |+.=.||... .++|+|++|.. +..--...++.|+.
T Consensus 117 ~Iv~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~i~Hf~eKLl~l~~~m~T~~gk~lA~~ 196 (215)
T d2pjqa1 117 QVVQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTREQYRHQPGTAINHFYEKLFKLAALMNTDTAKALAAH 196 (215)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccchhhhhcCCccHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567899998876 56666533 3334566542 47888888853 33222235677888
Q ss_pred HHHHHHHHHH
Q 007162 238 RMKELTTLAQ 247 (615)
Q Consensus 238 ~m~km~rlV~ 247 (615)
+.+-|+.|++
T Consensus 197 R~~~m~~Fl~ 206 (215)
T d2pjqa1 197 RTAVMHEFVD 206 (215)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877765
No 5
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=14.10 E-value=1.7e+02 Score=21.02 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=43.1
Q ss_pred CCHHHHHHHhhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007162 151 LSEENIQFLKTEVLHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (615)
Q Consensus 151 LSd~~I~~Lr~evL~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (615)
|.-..|.++ +++-|+.+ ||+|--+++.=++-+...+|-.-|..+++-++|..
T Consensus 4 LP~a~I~ri----~k~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGRI----IKNAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHHH----HHHTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHH----HHHCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 555666665 34457776 89999999999999999999999999999888875
No 6
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=13.52 E-value=1e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=36.3
Q ss_pred ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007162 164 LHSSGVQELVSTDMKELLRIAAADKREEFDVFLREVIRFGNLCK 207 (615)
Q Consensus 164 L~SeGVq~LVS~D~~~LL~LA~AEk~eeL~~~A~~VaRlG~rC~ 207 (615)
++..|+. -||.|--+++.-|+-+..+.|-.-|..++.-++|..
T Consensus 12 ~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 12 IRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4445665 489999999999999999999999999998877754
No 7
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.30 E-value=94 Score=22.93 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHhCC
Q 007162 284 GVTFLHSDLKQQRKLVRSLKKKSLWSRNLEEVMEKFVEIAAYMHQAILEAFGS 336 (615)
Q Consensus 284 ~l~~lq~elk~QRk~Vk~LKk~SLWsrt~d~vVekLvriV~~i~~rI~~vFG~ 336 (615)
++.+|.++|..|=-.||.||..--=....|..|.+| .-+-+..+.+.|.
T Consensus 2 S~~eL~~~I~~QGd~VR~LKa~ka~K~~id~aV~~L----L~LK~~yk~~tG~ 50 (54)
T d1r6ta1 2 SLLELFNSIATQGELVRSLKAGNASKDEIDSAVKML----VSLKMSYKAAAGE 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----HHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH----HHHHHHHHHhhCC
Confidence 467899999999999999997533333334444443 4445556666553
No 8
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=13.01 E-value=35 Score=27.72 Aligned_cols=38 Identities=32% Similarity=0.574 Sum_probs=28.8
Q ss_pred ccccccccccccccccccchhhhhhhcccccccCCCCCCc
Q 007162 80 KMTQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGF 119 (615)
Q Consensus 80 kv~~~~s~lgra~~~gl~kavevldtlgssm~~l~~~~gf 119 (615)
++++.--++| +|.+|+|-| +.+-.+|+.+|=+..++.+
T Consensus 24 ~~p~~vvIiG-gG~IG~E~A-~~~~~~G~~Vtive~~~~i 61 (125)
T d1ojta2 24 EVPGKLLIIG-GGIIGLEMG-TVYSTLGSRLDVVEMMDGL 61 (125)
T ss_dssp CCCSEEEEES-CSHHHHHHH-HHHHHHTCEEEEECSSSSS
T ss_pred ccCCeEEEEC-CCHHHHHHH-HHhhcCCCEEEEEEeeccc
Confidence 3455567888 899999988 8999999998876555433
No 9
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.60 E-value=34 Score=27.47 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=28.0
Q ss_pred ccccccccccccccccchhhhhhhcccccccCCCCCCcc
Q 007162 82 TQKRSFMGRGGAAGLAMTVDVLDALGSSMSSLNASSGFI 120 (615)
Q Consensus 82 ~~~~s~lgra~~~gl~kavevldtlgssm~~l~~~~gf~ 120 (615)
++.--++| +|.+|+|-| .+|-.+|+.+|=+..++-+.
T Consensus 23 p~~~vIiG-~G~ig~E~A-~~l~~lG~~Vtii~~~~~~l 59 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMG-SVYSRLGSKVTVVEFQPQIG 59 (122)
T ss_dssp CSEEEEEC-CSHHHHHHH-HHHHHTTCEEEEECSSSSSS
T ss_pred CCeEEEEC-CCchHHHHH-HHHHhhCcceeEEEeccccc
Confidence 34557888 999999976 88889999998776554443
No 10
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=11.52 E-value=2.7e+02 Score=22.49 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHhhhh--cccc-----cccHHHHHHHHHHHHHHHHHHHHHHh
Q 007162 285 VTFLHSDLKQQRKLVRSLKK--KSLW-----SRNLEEVMEKFVEIAAYMHQAILEAF 334 (615)
Q Consensus 285 l~~lq~elk~QRk~Vk~LKk--~SLW-----srt~d~vVekLvriV~~i~~rI~~vF 334 (615)
...+++++...+++++.|.+ ...| +++.|+|.+.+..++-.|+.+....+
T Consensus 130 ~e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~~~~ 186 (189)
T d1zaka1 130 EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMV 186 (189)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhc
Confidence 35677788888888777655 3566 67999999999999999998887765
Done!