Query 007163
Match_columns 615
No_of_seqs 226 out of 850
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 19:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 1E-113 3E-118 890.8 55.9 604 3-613 34-661 (734)
2 PF04130 Spc97_Spc98: Spc97 / 100.0 2.4E-69 5.2E-74 602.4 45.3 505 60-586 1-542 (542)
3 KOG2065 Gamma-tubulin ring com 100.0 5.6E-65 1.2E-69 505.7 40.7 534 57-608 1-611 (679)
4 KOG2000 Gamma-tubulin complex, 100.0 3.7E-52 8E-57 457.7 34.2 495 51-589 201-734 (879)
5 KOG4344 Uncharacterized conser 100.0 6.9E-26 1.5E-30 233.6 31.7 544 51-609 289-1048(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 59.3 1.1E+02 0.0024 33.0 11.1 65 50-128 178-246 (653)
7 KOG4344 Uncharacterized conser 49.2 10 0.00022 41.6 1.9 121 135-261 451-581 (1121)
8 PF01194 RNA_pol_N: RNA polyme 32.5 40 0.00087 25.3 2.3 51 546-597 10-60 (60)
9 PRK04016 DNA-directed RNA poly 31.7 43 0.00094 25.3 2.3 50 547-597 11-60 (62)
10 PLN00032 DNA-directed RNA poly 31.0 71 0.0015 24.8 3.4 52 546-598 10-61 (71)
11 PF09361 Phasin_2: Phasin prot 25.4 3.1E+02 0.0066 22.2 7.0 64 527-599 26-89 (102)
12 PF14966 DNA_repr_REX1B: DNA r 25.3 4E+02 0.0087 22.2 8.8 73 106-178 3-81 (97)
13 COG5415 Predicted integral mem 24.0 3.9E+02 0.0084 25.6 7.5 85 149-245 11-95 (251)
14 PF13060 DUF3921: Protein of u 23.9 1.5E+02 0.0033 20.9 3.7 47 541-587 4-51 (58)
15 COG5128 Transport protein part 20.6 5E+02 0.011 23.9 7.3 48 164-211 37-89 (208)
16 COG1644 RPB10 DNA-directed RNA 20.5 1.7E+02 0.0036 22.2 3.6 51 546-597 10-60 (63)
17 PF15027 DUF4525: Domain of un 20.2 4.4E+02 0.0095 23.1 6.5 61 101-163 37-103 (138)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=1.5e-113 Score=890.84 Aligned_cols=604 Identities=44% Similarity=0.746 Sum_probs=540.9
Q ss_pred CCCCCCCCCcccCCCc-CCc-cccchhhh-----hh-hccc-cccccccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 007163 3 MSYPSTPRWNIERPFL-TGR-FHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI 73 (615)
Q Consensus 3 ~~~p~~p~w~~~~~~~-~~~-~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dlL~~L~G~~g~~i 73 (615)
++.|..|.|...||++ ||. +++..... +. ...+ ..+.....+++.+|.+.||..+++||++||.|++|.|+
T Consensus 34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV 113 (734)
T KOG2001|consen 34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV 113 (734)
T ss_pred cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence 5677889999999999 773 33332211 11 1111 23556677899999999999999999999999999999
Q ss_pred eeecccccCCCCCC---CCCcceeEecCCCCHHHHHHHHHHHhhHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 007163 74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD 150 (615)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~~~g~v~~A~a~al~~~L~~ 150 (615)
+.+. ..+... ...+..|.|.|+.+-++++++++++|+|.+|..+++||++.+.++.|.|++|+|+|+++++.+
T Consensus 114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d 189 (734)
T KOG2001|consen 114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD 189 (734)
T ss_pred ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence 9865 222111 013578999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 007163 151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC 230 (615)
Q Consensus 151 y~~~v~~lE~~~~~~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~ 230 (615)
|+..|.++|++.+.+.+|+++||++++|++..++.++..+..+.++.++||.+|+.|++++..+.||+..+.++.++++.
T Consensus 190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~ 269 (734)
T KOG2001|consen 190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN 269 (734)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccCcchhhhhhcccccc-cCCCChhHHHHHHHHHhhhhHHHHHH
Q 007163 231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR 309 (615)
Q Consensus 231 ~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~~~~~~~~~~W~~~y~i-~~~vP~Fl~~~a~~Il~~GK~l~~lr 309 (615)
+++||++|+++|++.|.++|||+||||.++ ..+++.+++|+.++||++||+| +|.+|.|+.+.|+|||.||||+||+|
T Consensus 270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR 348 (734)
T KOG2001|consen 270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR 348 (734)
T ss_pred hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999 7778899999999999999999 78999999999999999999999999
Q ss_pred hhCCCCCccCcccccccccC--CchhhHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHHH
Q 007163 310 ECGHSAQVPTSENSKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIARE 387 (615)
Q Consensus 310 ~~~~~~~~p~~e~~~~~~f~--~~~~~~~~I~~~~~~as~~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~ 387 (615)
+||+.+++|.+.+. +..+. .+..+.+.|+++|..|+..++++++++++|.+||+++|+||||++|||+.+|+|.+.+
T Consensus 349 eC~~~v~~p~~~n~-~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~e 427 (734)
T KOG2001|consen 349 ECGKIVTIPQSSNE-INDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEE 427 (734)
T ss_pred HhCccCCCCcchhh-hccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 99999998876532 22222 2578999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCccccHHHHHHHHHHHHH-hhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCceee
Q 007163 388 ELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLE 463 (615)
Q Consensus 388 ~L~~~~~~i~~~~L~~ll~~al~-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~---~~~~~~~ 463 (615)
+|.|+.+.+++.+|+++|+.|+| .|.+.+||++++++|++++.++..++..+..++....+.+ ...+| .+++|+|
T Consensus 428 EL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~an-s~~dP~~~l~lsGlE 506 (734)
T KOG2001|consen 428 ELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEESAN-SQADPLEHLDLSGLE 506 (734)
T ss_pred HHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccccc-cccCcchhccccchh
Confidence 99999999999999999999999 7888899999999999999999999988876664332221 12333 6789999
Q ss_pred EEEeeeecCCcceEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcc-hhHHhHHHHHHHHHHHHHHHH
Q 007163 464 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLL 542 (615)
Q Consensus 464 ~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~ 542 (615)
+++|+|+||||||+||++++|.+||+|||++|.||||+++||.+|+.++..|..+..+ ++.++++.||++|++||+++.
T Consensus 507 ~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~ 586 (734)
T KOG2001|consen 507 AFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIE 586 (734)
T ss_pred hheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888766543 567889999999999999999
Q ss_pred HHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCch-HHHHH---HHHHHHHHHHHHHHHHHh
Q 007163 543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKM---VMDAGLEYVRQDRRMWKM 613 (615)
Q Consensus 543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~-~ll~~---i~~~c~~F~~~~~~~~~~ 613 (615)
+|++.+||||+|+.|++.+++++++|+++..|+.|||.|+++|||+.+ .+++. +.++|++||+++|.++..
T Consensus 587 ~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~ 661 (734)
T KOG2001|consen 587 YYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQS 661 (734)
T ss_pred HHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999998 55554 566999999999998754
No 2
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=2.4e-69 Score=602.35 Aligned_cols=505 Identities=29% Similarity=0.548 Sum_probs=356.8
Q ss_pred HHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecCC-----CCHHHHHHHHHHHhhHhHHHHHHHHhhhccCC--C
Q 007163 60 DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-----MDLALQEMAKRIFPLCESFVLTGQFVESRSQF--K 132 (615)
Q Consensus 60 dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~-----~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~--~ 132 (615)
|+|++|+|++|.+|++++ ...+|.+.++ +++++++++++++++|+.|++|++|++..... .
T Consensus 1 dll~~L~G~~s~~f~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~ 68 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDK------------DSDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSE 68 (542)
T ss_dssp HHHHHHTT---SSSEEET------------T-TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S
T ss_pred CHHHHccCCCCceEEEeC------------CCCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 799999999999999998 2257777665 58999999999999999999999999975433 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHh----hcCCCchhhHHHHH
Q 007163 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKA----SANNFTGSAVLNLL 207 (615)
Q Consensus 133 ~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~l~~~~~~~~~~l~~L~~i~~~~----~~~~~~g~~lL~~L 207 (615)
.|++.+|||++++++|.+|+..|+++|.++.. +.+||..+...++|+...++.|++++.++ ..+..+|+.+|+.|
T Consensus 69 ~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L 148 (542)
T PF04130_consen 69 RGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSIL 148 (542)
T ss_dssp -SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHH
Confidence 89999999999999999999999999999877 78999999999999999999999999987 33578999999999
Q ss_pred HHHH-HhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccCcchhhhhhcccccc-cC
Q 007163 208 QSQA-KAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KD 285 (615)
Q Consensus 208 ~~~~-~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~~~~~~~~~~W~~~y~i-~~ 285 (615)
|+.+ ...+|++..++++..|+.++++||++++..||.+|++.||++||||.++++. ....+.++|+++|.+ .+
T Consensus 149 ~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~-----~~~~~~~~w~~~f~l~~~ 223 (542)
T PF04130_consen 149 YERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKES-----NSESSEDFWDDRFVLRES 223 (542)
T ss_dssp HHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE---------------------EEE-GG
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccc-----cCcccchhhccCEEECcc
Confidence 9987 3358999999999999999999999999999999999999999999998321 123467899999999 67
Q ss_pred CCChhH-HHHHHHHHhhhhHHHHHHhhCCCCCccCcccc-----------------cccccCCchhhHHHHHHHHHHHHH
Q 007163 286 GIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENS-----------------KLLSFGSNHHYLECVKVAYEFASG 347 (615)
Q Consensus 286 ~vP~Fl-~~~a~~Il~~GK~l~~lr~~~~~~~~p~~e~~-----------------~~~~f~~~~~~~~~I~~~~~~as~ 347 (615)
.+|.|+ .++|++|+.+||++++||.|+........... ....-.....+.+.|++.+..+++
T Consensus 224 ~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 303 (542)
T PF04130_consen 224 RVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNK 303 (542)
T ss_dssp GS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHH
T ss_pred cCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 899999 55999999999999999999876432111100 000111235778899999999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHhhhcCCCCCCCccceee
Q 007163 348 ELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSV 427 (615)
Q Consensus 348 ~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~i~~~~L~~ll~~al~~s~~~~d~~~~~l~~~l 427 (615)
.++++++++++|.+||+++|+||||++|||+..|++.+++.+.++..+.+...++..++.+++.......+...... .
T Consensus 304 ~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 381 (542)
T PF04130_consen 304 SLLDLLFEDYNLLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLR-S- 381 (542)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEE-E-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhh-h-
Confidence 99999999999999999999999999999999999999999999888888888888888888765443222110000 0
Q ss_pred ccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCcceEeechhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007163 428 ERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGA 507 (615)
Q Consensus 428 ~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~~~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~ 507 (615)
...............+. ..........+..+|+.+.|+|++||||++|||+++|.+|+.||+|||++|+|++.|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~ 458 (542)
T PF04130_consen 382 GEISSSTSLSSNLSSND---SSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSV 458 (542)
T ss_dssp ---------------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhh---hhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 000112334578999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccc-cC----CcchhHHhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 007163 508 WQVHQGARA-FN----ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCL 582 (615)
Q Consensus 508 w~~~~~~r~-~~----~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~ 582 (615)
|...+..+. .. .....+++++.+|++|+||++++++|++.+||++.|.+|++++++++|+|+|+++|++||++|+
T Consensus 459 w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~ 538 (542)
T PF04130_consen 459 WRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRIL 538 (542)
T ss_dssp HHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 998764321 11 1224678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHc
Q 007163 583 RECL 586 (615)
Q Consensus 583 ~~c~ 586 (615)
++||
T Consensus 539 ~~~f 542 (542)
T PF04130_consen 539 RRCF 542 (542)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9997
No 3
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=5.6e-65 Score=505.68 Aligned_cols=534 Identities=22% Similarity=0.350 Sum_probs=410.3
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecCCCCHHHHHHHHHHHhhHhHHHHHHHHh---hhcc----
Q 007163 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFV---ESRS---- 129 (615)
Q Consensus 57 lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi---~~~~---- 129 (615)
|++|||.||.|++|..|.++++.+... .+-.++.=++||+++++++++.+|..|+.+.+|. ++..
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa--------~~~d~p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~ 72 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLA--------ETTDIPQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSS 72 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhccccc--------cccCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 689999999999999999887432111 0101122378999999999999999999998886 2211
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 007163 130 -----------QFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (615)
Q Consensus 130 -----------~~~~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (615)
...+|.|..|+|.+|...|++|+..|..+|+.+.. ...||..++..+......+..+.+++.++...+
T Consensus 73 ~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~ 152 (679)
T KOG2065|consen 73 GRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPLFPFMRNVITEIHVLN 152 (679)
T ss_pred cccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 12478999999999999999999999999999976 468999988888777888888999999998889
Q ss_pred CchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCccc--ccccCcchhhh
Q 007163 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLL--KESLTQDYDAK 275 (615)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~--~~~~~~~~~~~ 275 (615)
.+||.||+.||++ +||.|.+|..+.+++..+..++++++..||.+|.++||++||||+..+... ..+.+++..++
T Consensus 153 irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~ 229 (679)
T KOG2065|consen 153 IRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATES 229 (679)
T ss_pred cchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhh
Confidence 9999999999997 589999999999999999999999999999999999999999999654321 00111110100
Q ss_pred hh-----------ccccccc-----CCCChhHHH-HHHHHHhhhhHHHHHHhhCCCC-------CccCccc---cc----
Q 007163 276 YW-----------RQRYSLK-----DGIPSFLAN-IAGKILTTGKYLNVMRECGHSA-------QVPTSEN---SK---- 324 (615)
Q Consensus 276 ~W-----------~~~y~i~-----~~vP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~-------~~p~~e~---~~---- 324 (615)
.- -..|.+. ...|.|.+- .+.+.|..|+...+........ +.|..|+ ..
T Consensus 230 L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt~G 309 (679)
T KOG2065|consen 230 LLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLTYG 309 (679)
T ss_pred hhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccchhh
Confidence 00 0112221 246777776 8888888888888776432111 1111111 00
Q ss_pred -ccc------------cCC-----chhhHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHH
Q 007163 325 -LLS------------FGS-----NHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAR 386 (615)
Q Consensus 325 -~~~------------f~~-----~~~~~~~I~~~~~~as~~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~ 386 (615)
+.+ ... ...|...|+..++.|+.+||++.+++.+|.+||+.||+|||||+|||++.|++.+.
T Consensus 310 ~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~~ 389 (679)
T KOG2065|consen 310 QLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQMV 389 (679)
T ss_pred hhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 110 000 13567789999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCccccHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEE
Q 007163 387 EELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFS 466 (615)
Q Consensus 387 ~~L~~~~~~i~~~~L~~ll~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~~~l~ 466 (615)
..|+.|+.....++++--++.|--...+..|.|-+.++..+..+.-..+... .+.+. +. +......+..||+++.
T Consensus 390 ~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~aD~---~~~~t-Gk-a~ltsdtsvdGWdAl~ 464 (679)
T KOG2065|consen 390 GTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEPADT---SDFNT-GK-AFLTSDTSVDGWDALS 464 (679)
T ss_pred HHhhCCchhhcccccchhhhhhhhhccccccccccceEEEecccCCCCccch---hhhcc-Cc-ccccCCCCccchhhhc
Confidence 9999988877767777777776555555667777777665544321000000 00110 00 0122245789999999
Q ss_pred eeeecCCcceEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---c-ccCCcchhHHhHHHHHHHHHHHHHHHH
Q 007163 467 LSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGA---R-AFNASGTAISRSSLLCRSMLKFINSLL 542 (615)
Q Consensus 467 L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~---r-~~~~~~~~~~~~~~lr~~m~~Fv~~l~ 542 (615)
|.|+|.||++++|||.++.+||.||+||+.+|+++..|+.+|..++.. + .-...++.++ |.+|..|.+|++|+|
T Consensus 465 L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~NlQ 542 (679)
T KOG2065|consen 465 LKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNLQ 542 (679)
T ss_pred eeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999865421 1 1111223343 999999999999999
Q ss_pred HHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHHHHHHHHH
Q 007163 543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDL---LKMVMDAGLEYVRQDR 608 (615)
Q Consensus 543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~l---l~~i~~~c~~F~~~~~ 608 (615)
||+++||||++|..++..++...|++.|..+|+.||.+++.+|||.+..+ +.+|+++|.+||+++.
T Consensus 543 yYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~ 611 (679)
T KOG2065|consen 543 YYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMT 611 (679)
T ss_pred eeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998854 5668889999998764
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=3.7e-52 Score=457.71 Aligned_cols=495 Identities=27% Similarity=0.438 Sum_probs=420.1
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecCC--CCHHHHHHHHHHHhhHhHHHHHHHHhhhc
Q 007163 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS--MDLALQEMAKRIFPLCESFVLTGQFVESR 128 (615)
Q Consensus 51 ~~qE~~lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~--~~~sl~~l~~~il~l~~~~~~l~~fi~~~ 128 (615)
.+.|..+|++++|+++|++|.++.+... ...|.+... ++.+...++..+-++|.+|.++.+|+...
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~------------~~~~~~k~~~~~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSE------------LECFVVKGPVHLPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccH------------HhhhhhhccccchhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 5999999999999999999999998861 123333322 45667788899999999999999999875
Q ss_pred cCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CCchhHHHHhhhhhHHHHHHHHHHHHHhh
Q 007163 129 SQF---KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG-----------RLSIQGLWFYCQPMLGSMQAVSAVIHKAS 194 (615)
Q Consensus 129 ~~~---~~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~~-----------~lsL~~l~~~~~~~~~~l~~L~~i~~~~~ 194 (615)
... ..|++.+||++++++.|++|+..|..+..+.... .++|..++.++.....+|++++.++..+.
T Consensus 269 ~l~~~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~ 348 (879)
T KOG2000|consen 269 VLDNPYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQ 348 (879)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhc
Confidence 433 4899999999999999999999999988777321 14777888888888899999999999987
Q ss_pred cCCCchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccCcchhh
Q 007163 195 ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDA 274 (615)
Q Consensus 195 ~~~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~~~~~~~~ 274 (615)
..+|+.++...+.... +|++-++.+...++...+.||.+++..|++.|.+.|+|+||||.+++.... -..+
T Consensus 349 --~~~g~~l~~~~~~f~~--~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~-----~~~d 419 (879)
T KOG2000|consen 349 --VPKGGKLLSAVHEFLT--HGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGS-----VKDD 419 (879)
T ss_pred --ccCCCcchHHHHHHHH--hCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCc-----cccc
Confidence 7889999998888764 899999999999999999999999999999999999999999999886321 1246
Q ss_pred hhhcccccc-cCCCChhHHH-HHHHHHhhhhHHHHHHhhCCCCCccCccc---------ccccccCCchhhHHHHHHHHH
Q 007163 275 KYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSEN---------SKLLSFGSNHHYLECVKVAYE 343 (615)
Q Consensus 275 ~~W~~~y~i-~~~vP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~~p~~e~---------~~~~~f~~~~~~~~~I~~~~~ 343 (615)
.+|+.+|.+ .+.+|.|+.. +|.||+.|||++|+++.|+.+..|...-. ..-..++....+...|+++|.
T Consensus 420 ~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~~~~~l~~~v~~ay~ 499 (879)
T KOG2000|consen 420 RLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYASDVGLLGSVSEAYS 499 (879)
T ss_pred cccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccCCChhHHHHHhhhhc
Confidence 789999999 5899999999 99999999999999999988655421100 012334455678889999999
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHhh-hcCCCCCCCc
Q 007163 344 FASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRST-AAAADPCHED 422 (615)
Q Consensus 344 ~as~~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~i~~~~L~~ll~~al~~s-~~~~d~~~~~ 422 (615)
...+++.+++.+.+++.+|+.++|.|.|+|+|||+...|+.+...+..|...+..++|+..+|.|+|.+ +++.||-
T Consensus 500 e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~yd~~--- 576 (879)
T KOG2000|consen 500 EIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQYDDR--- 576 (879)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhccccCCh---
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 7765541
Q ss_pred cceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCcceEeechhHHHHHHHHHHHHHHHHHHHH
Q 007163 423 LTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 502 (615)
Q Consensus 423 l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~~~l~L~Y~v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~~ 502 (615)
+++.++. .+. .....+..|||.++++|.+.-|+++++|++++.+|-+||+|+|++||+++
T Consensus 577 --------~vL~Rld------~~~------~~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~ 636 (879)
T KOG2000|consen 577 --------DVLNRLD------VRV------LKLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEF 636 (879)
T ss_pred --------hhhhhhh------hHh------hhccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223322 111 11234678999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHhhhc-cc--c----cC--CcchhHHhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhccCCC-HHHHH
Q 007163 503 QL-CGAWQVHQG-AR--A----FN--ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS-IDEVI 571 (615)
Q Consensus 503 ~L-~~~w~~~~~-~r--~----~~--~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~-ld~l~ 571 (615)
.| ..+|+.++. .+ + .. .....+++.+.+..+|.||+.++++|+.++|||.+|..|..+++++.+ +|..+
T Consensus 637 ~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~ld~~~ 716 (879)
T KOG2000|consen 637 LLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPLDFQL 716 (879)
T ss_pred HHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCchHHHH
Confidence 99 789998873 11 1 11 112445678889999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHcCCc
Q 007163 572 QHHDFFLDKCLRECLLHL 589 (615)
Q Consensus 572 ~~H~~fL~~i~~~c~L~~ 589 (615)
++|+-|++.|.-.|++.+
T Consensus 717 eah~~~~~ti~i~~~l~~ 734 (879)
T KOG2000|consen 717 EAHRPFLDTISIRGILQE 734 (879)
T ss_pred hhccccccceeecccccC
Confidence 999999999999999988
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=6.9e-26 Score=233.55 Aligned_cols=544 Identities=18% Similarity=0.208 Sum_probs=361.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecCCCCHHHHHHHHHHHhhHhHHHHHHHHhhhccC
Q 007163 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQ 130 (615)
Q Consensus 51 ~~qE~~lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~ 130 (615)
-++|-..+.+-+|.+.|.+.-|+..- .+|+... ..-..+.....+..+..++.+.-+|.....+..|+.....
T Consensus 289 lvtepprifeqlWllggtdkLFifih-----idgkcqd--rhlialphlahpcdnfaleqiaalghnafgLlafidekmg 361 (1121)
T KOG4344|consen 289 LVTEPPRIFEQLWLLGGTDKLFIFIH-----IDGKCQD--RHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFIDEKMG 361 (1121)
T ss_pred ccCCCCcHHHHHHHhcCCceEEEEEe-----ecceeee--eeeeeccccccchHHHHHHHHHHhhhhHHHHHhccchhcc
Confidence 46677788899999998887666543 3455431 1122223334566677889999999999999999877532
Q ss_pred CC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCchhHHHHhhhhhHHH--HHHHHH
Q 007163 131 FK------------------NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGS--MQAVSA 188 (615)
Q Consensus 131 ~~------------------~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~~--~lsL~~l~~~~~~~~~~--l~~L~~ 188 (615)
.+ +=..-+||--++-+.--.|...+++++.-+.+. .+.|..+.-.+.+.+.. +..+..
T Consensus 362 hepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmlelrhiidlHk 441 (1121)
T KOG4344|consen 362 HEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLELRHIIDLHK 441 (1121)
T ss_pred CCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHHH
Confidence 11 012446666666665566777888888765443 45666666555555443 333333
Q ss_pred HHHHhh---cC---C-CchhhHHHHHHHHHHhc--cC--CHHH-HHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcce
Q 007163 189 VIHKAS---AN---N-FTGSAVLNLLQSQAKAM--AG--DNTV-RSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFF 256 (615)
Q Consensus 189 i~~~~~---~~---~-~~g~~lL~~L~~~~~~~--~g--d~~~-~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFf 256 (615)
+.-.-. +. . .....+++-+++.+..+ .| |++. ..++-.+......||++.++.|+..|.+.|+..||.
T Consensus 442 lffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaefi 521 (1121)
T KOG4344|consen 442 LFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEFI 521 (1121)
T ss_pred HhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHHH
Confidence 332111 01 1 22347899999876532 23 3332 223344666788999999999999999999999999
Q ss_pred EeeCCcccccccCcchhhhhh---------------cccccc-------cCC--------CChhHHHHHHHHHhhhhHHH
Q 007163 257 IAEDKSLLKESLTQDYDAKYW---------------RQRYSL-------KDG--------IPSFLANIAGKILTTGKYLN 306 (615)
Q Consensus 257 I~~~~~~~~~~~~~~~~~~~W---------------~~~y~i-------~~~--------vP~Fl~~~a~~Il~~GK~l~ 306 (615)
|..+.+..-. -..+| .++|++ ++. +-.|..+.-..|..+||...
T Consensus 522 iarlknrlvk------HrdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFckeedaniimagkrkq 595 (1121)
T KOG4344|consen 522 IARLKNRLVK------HRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKEEDANIIMAGKRKQ 595 (1121)
T ss_pred HHHHhccccc------cchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9987653100 11222 012222 012 33455665567889999999
Q ss_pred HHHh--hCCCC----------C-cc----------------------C---------ccc----------------cc--
Q 007163 307 VMRE--CGHSA----------Q-VP----------------------T---------SEN----------------SK-- 324 (615)
Q Consensus 307 ~lr~--~~~~~----------~-~p----------------------~---------~e~----------------~~-- 324 (615)
.+.. |..+. + +| . .|. .+
T Consensus 596 llgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspntLsEmlqankEiqLmklhdeaeshffalddVh 675 (1121)
T KOG4344|consen 596 LLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDVH 675 (1121)
T ss_pred hhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhcc
Confidence 8873 32211 1 11 0 000 00
Q ss_pred ----ccccCC--------------------------c---------hhhHHHHHHH--HHHHHHHHHHHHHhhcCHHHHH
Q 007163 325 ----LLSFGS--------------------------N---------HHYLECVKVA--YEFASGELLNLIKERYDLMGKL 363 (615)
Q Consensus 325 ----~~~f~~--------------------------~---------~~~~~~I~~~--~~~as~~ll~~l~~~~~L~~~L 363 (615)
.+.|.+ + ..+...|+++ +...+..|+.-+.+++.+.+.|
T Consensus 676 cgadaidfadepeedkDfedkfacgdvcvdrsqeirncelFaiflqpclephidkQrerLdccgnLManikKdlelsecL 755 (1121)
T KOG4344|consen 676 CGADAIDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQRERLDCCGNLMANIKKDLELSECL 755 (1121)
T ss_pred CcccccchhhCCCccccHHHhhccccccccccccceehhhHHHHhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 001110 0 1234578888 5667889999999999999999
Q ss_pred HHHHHhHhccCcchHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHhhhcCCC--CCCCccceeeccccHH-HHHHhhh
Q 007163 364 RSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAAD--PCHEDLTCSVERSSLL-KRMATLK 440 (615)
Q Consensus 364 ~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~~i~~~~L~~ll~~al~~s~~~~d--~~~~~l~~~l~~~~l~-~~l~~~~ 440 (615)
++.+.||++.+||.+..|.-..+..+...-.+-+...++..|+.|+--. ..+. |+...+.+.+++.+-. ..|.++.
T Consensus 756 QakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamgle-krYlfvedsnaLfirfEnvdnakkaLgsvl 834 (1121)
T KOG4344|consen 756 QAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLE-KRYLFVEDSNALFIRFENVDNAKKALGSVL 834 (1121)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhh-hcccccccccceeEEeecccchhhhcchhh
Confidence 9999999999999999999998888876556666666666677765311 0111 3444555555532211 1111110
Q ss_pred c-----------------cccccCCCCCCCCCCCCCceeeEEEeeee--cCCcceEeechhHHHHHHHHHHHHHHHHHHH
Q 007163 441 G-----------------VEIKTSSDSVDLEQPVSITGLETFSLSYK--VQWPLSIVISRKALTKYQMVFRLLFHCKHVE 501 (615)
Q Consensus 441 ~-----------------l~~~~~~~s~~~~~~~~~~~~~~l~L~Y~--v~wPL~lIit~~~l~~Y~~IFr~Ll~lk~~~ 501 (615)
. +-.+..+.- ....-....++|++.|+|+ ++||..+|||+.+|+.||.+|+.|+++|+|.
T Consensus 835 tsklcavllphypqlahylhvklisqi-nsnsikvveaLdaieLdferpmamhqdiiislacmkdYNqVflLlLkiKWAk 913 (1121)
T KOG4344|consen 835 TSKLCAVLLPHYPQLAHYLHVKLISQI-NSNSIKVVEALDAIELDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKWAK 913 (1121)
T ss_pred hhhhhhhhcccchhhhhHHHHHHHhhh-cccchhhhhhhhheeecccCCcccchheEecHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000 0011234678999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHhh---hc----cc---------------ccCCcchhHHhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH
Q 007163 502 RQLCGAWQVH---QG----AR---------------AFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHN 559 (615)
Q Consensus 502 ~~L~~~w~~~---~~----~r---------------~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~ 559 (615)
|.|.++-... +. .| +....+..++|+.++|.+++|||++|+.|+|..|+++.-.+|+.
T Consensus 914 wkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleilRfkLiffiNnLHahIMeailhStgleFeh 993 (1121)
T KOG4344|consen 914 WKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEFEH 993 (1121)
T ss_pred HhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 9999853311 00 11 11223567899999999999999999999999999999999999
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHHH
Q 007163 560 RLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-----DLLKMVMDAGLEYVRQDRR 609 (615)
Q Consensus 560 ~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~-----~ll~~i~~~c~~F~~~~~~ 609 (615)
++..|+|+|+++..|.+||..+...|+|+++ +.+.+|+.+.+.|+.-|+.
T Consensus 994 qieEaKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLalmfadeWqt 1048 (1121)
T KOG4344|consen 994 QIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLALMFADEWQT 1048 (1121)
T ss_pred HHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 9999999999999999999999999999986 5677889999999999984
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=59.32 E-value=1.1e+02 Score=33.02 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecC---CCCHHH-HHHHHHHHhhHhHHHHHHHHh
Q 007163 50 AGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLAL-QEMAKRIFPLCESFVLTGQFV 125 (615)
Q Consensus 50 ~~~qE~~lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl-~~l~~~il~l~~~~~~l~~fi 125 (615)
..+.|+-+++|.+++|+|++|.+|.... ..|...| ++..++ +.++..+...|.-+..+++-+
T Consensus 178 ~riseqs~~~e~IymL~Gy~~~~f~~ve--------------~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva 243 (653)
T PF14609_consen 178 YRISEQSWKYEIIYMLMGYQGHIFTCVE--------------EILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVA 243 (653)
T ss_pred eeecccchHHHHHHHHhcCcchhhhhhH--------------hhhcccccccchHHHHHHHHHHHhhccccchHHHHHHh
Confidence 3688999999999999999999996554 1222222 333333 456677777788777777655
Q ss_pred hhc
Q 007163 126 ESR 128 (615)
Q Consensus 126 ~~~ 128 (615)
.++
T Consensus 244 ~~~ 246 (653)
T PF14609_consen 244 NER 246 (653)
T ss_pred CCc
Confidence 554
No 7
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.19 E-value=10 Score=41.64 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--Cchh--HHHHhhhhhHHHHHHHHHHHHHhhcCCCch------hhHH
Q 007163 135 LVNHAFAASLRALLLDYEAMVAQLEHQFRLGR--LSIQ--GLWFYCQPMLGSMQAVSAVIHKASANNFTG------SAVL 204 (615)
Q Consensus 135 ~v~~A~a~al~~~L~~y~~~v~~lE~~~~~~~--lsL~--~l~~~~~~~~~~l~~L~~i~~~~~~~~~~g------~~lL 204 (615)
+.-.-|+-+.+.+|+...+.|...|.....+. -++. .+| ++.....|+.|.+++.... --+| ..++
T Consensus 451 ppdeffavgardLlnpickaiiaYddrgeadeakntlilFsie--feehfpqLqlldElaedgh--LddGaaefiiarlk 526 (1121)
T KOG4344|consen 451 PPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIE--FEEHFPQLQLLDELAEDGH--LDDGAAEFIIARLK 526 (1121)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEe--hhhhhHHHHHHHHHHHhcc--ccccHHHHHHHHHh
Confidence 45577889999999999999998887664432 1222 344 3455566777777776543 2233 3455
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCC
Q 007163 205 NLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDK 261 (615)
Q Consensus 205 ~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~ 261 (615)
|.+++... .-....+.+.........+-|+..++.|.......|...||+|+--.
T Consensus 527 nrlvkHrd--fqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFck 581 (1121)
T KOG4344|consen 527 NRLVKHRD--FQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCK 581 (1121)
T ss_pred ccccccch--hhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHH
Confidence 66655321 11134566777777888899999999999998999999999997644
No 8
>PF01194 RNA_pol_N: RNA polymerases N / 8 kDa subunit; InterPro: IPR000268 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. Archaebacterial subunit N (gene rpoN) [] is a small protein of about 8 kDa, it is evolutionary related [] to a 8.3 kDa component shared by all three forms of eukaryotic RNA polymerases (gene RPB10 in yeast and POLR2J in mammals) as well as to African swine fever virus (ASFV) protein CP80R []. There is a conserved region which is located at the N-terminal extremity of these polymerase subunits; this region contains two cysteines that binds a zinc ion [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_N 3HKZ_N 1EF4_A 3H0G_V 2Y0S_N 2R92_J 3M4O_J 3S2D_J 1R9S_J 1Y1W_J ....
Probab=32.53 E-value=40 Score=25.33 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=34.8
Q ss_pred hhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 007163 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVM 597 (615)
Q Consensus 546 ~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~ 597 (615)
...||...|.++.+.+++-.+-.+++..-.- -.-|.+..||+.-+++++++
T Consensus 10 CGkvi~~~~e~y~~~~~~~~~~~~~Ld~LG~-~ryCCRrmlLshvdli~~ll 60 (60)
T PF01194_consen 10 CGKVIGNKWEEYLERLENGEDPGDALDDLGL-KRYCCRRMLLSHVDLIDKLL 60 (60)
T ss_dssp TTSBTCGHHHHHHHHHHTTS-HHHHHHHTT--SSHHHHHHHHTB--THHHHH
T ss_pred CCCChhHhHHHHHHHHHcCCCHHHHHHHhCC-ceeehhhHHHHHHHHHHHhC
Confidence 3568999999999999987777666554221 24577888888888877653
No 9
>PRK04016 DNA-directed RNA polymerase subunit N; Provisional
Probab=31.67 E-value=43 Score=25.31 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=37.0
Q ss_pred hhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 007163 547 FEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVM 597 (615)
Q Consensus 547 ~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~ 597 (615)
..||...|.++...+++-.+..+++..- ..=..|.+..+|+..+++++++
T Consensus 11 Gkvi~~~we~y~~~~~~g~~~~~vLd~L-g~~RyCCRRMllthvdlid~l~ 60 (62)
T PRK04016 11 GKVIAEKWEEFKERVEAGEDPGKVLDDL-GVKRYCCRRMLLSHVELIDEVI 60 (62)
T ss_pred CCChHHHHHHHHHHHHcCCCHHHHHHHc-CCcchhhhhHHHHHHHHHHHHH
Confidence 4688999999999998877777665521 1223577888888888887765
No 10
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=31.00 E-value=71 Score=24.83 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=40.0
Q ss_pred hhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007163 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMD 598 (615)
Q Consensus 546 ~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~~ 598 (615)
...||...|.++.+.+++-.+-.+++..-. .=.-|.++.||+..+++++++.
T Consensus 10 CGkvig~~we~y~~~~~~g~~~~~~LD~LG-~~RYCCRRMllsHvdlid~ll~ 61 (71)
T PLN00032 10 CGKVIGNKWDTYLDLLQADYSEGDALDALG-LVRYCCRRMLMTHVDLIEKLLN 61 (71)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHc
Confidence 456899999999999988777777655421 2245789999999999888764
No 11
>PF09361 Phasin_2: Phasin protein; InterPro: IPR018968 Phasins (or granule-associate proteins) are surface proteins found covering Polyhydroxyalkanoate (PHA) storage granules in bacteria. Polyhydroxyalkanoates are linear polyesters produced by bacterial fermentation of sugar or lipids for the purpose of storing carbon and energy, and are accumulated as intracellular granules by many bacteria under unfavorable conditions, enhancing their fitness and stress resistance []. The layer of phasins stabilises the granules and prevents coalescence of separated granules in the cytoplasm and nonspecific binding of other proteins to the hydrophobic surfaces of the granules. For example, in Ralstonia eutropha (strain ATCC 17699/H16/DSM 428/Stanier 337) (Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)), the major surface protein of polyhydroxybutyrate (PHB) granules is phasin PhaP1(Reu), which occurs along with three homologues (PhaP2, PhaP3, and PhaP4) that have the capacity to bind to PHB granules but are present at minor levels [, ]. These four phasins lack a highly conserved domain but share homologous hydrophobic regions. This entry describes a group of phasins that associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB).
Probab=25.43 E-value=3.1e+02 Score=22.20 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007163 527 SSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMDA 599 (615)
Q Consensus 527 ~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~~~ 599 (615)
+..+....+.+++.... ....+.+++.+++|+.++...+.+|+......+.=...++...+.++
T Consensus 26 ~~~l~~~~~~~~~~~~~---------~~~~~~~~l~~a~~~~e~~~~Q~~~~~~~~e~~~~~~~~~~e~~~~~ 89 (102)
T PF09361_consen 26 AEALAALNLEAARQNVE---------EAFAQAQQLASAKDPQELVALQSEFAQEQFERLASYARELAEIASKA 89 (102)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554322 24456788889999999999999999999877755445555444443
No 12
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=25.32 E-value=4e+02 Score=22.19 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=43.1
Q ss_pred HHHHHHHhh----HhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCchhHHHHhhhh
Q 007163 106 EMAKRIFPL----CESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR--LGRLSIQGLWFYCQP 178 (615)
Q Consensus 106 ~l~~~il~l----~~~~~~l~~fi~~~~~~~~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~--~~~lsL~~l~~~~~~ 178 (615)
+++++|+.+ +..|.++.+=.+.........-.+++|..|....++.-..|..+|..+. .+...+..+...+|.
T Consensus 3 ~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~ 81 (97)
T PF14966_consen 3 ELLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQE 81 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 456666654 5556665553333211122244566777777777888888888888776 345555555555543
No 13
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=23.97 E-value=3.9e+02 Score=25.58 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhcCCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCCHHHHHHHHHHH
Q 007163 149 LDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMT 228 (615)
Q Consensus 149 ~~y~~~v~~lE~~~~~~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll 228 (615)
-+|...+.+||.++-++...+..+...+..+..++.+-+-.+..+. ++.+|-. ++|......+...++
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l~---------~S~iy~~---~~~y~~~~~It~~ll 78 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVLA---------LSYIYWE---YHGYRPYLVITALLL 78 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------HHHHHhh---ccccchhHHHHHHHH
Confidence 4577788888888877666666666555555444433221111111 2555543 578776666666666
Q ss_pred HHHhHHHHHHHHHHHhc
Q 007163 229 QCASNAYLGILERWVYE 245 (615)
Q Consensus 229 ~~~~~py~~~l~~Wi~~ 245 (615)
-..+--+++..-.|+++
T Consensus 79 gs~slymfrwal~~lye 95 (251)
T COG5415 79 GSGSLYMFRWALTKLYE 95 (251)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 54555555666677764
No 14
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=23.93 E-value=1.5e+02 Score=20.94 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=33.0
Q ss_pred HHHHHhhhcchhhHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHcC
Q 007163 541 LLHYLTFEVLEPNWHVMHNRLQTA-KSIDEVIQHHDFFLDKCLRECLL 587 (615)
Q Consensus 541 l~~Y~~~~VIe~~w~~l~~~l~~a-~~ld~l~~~H~~fL~~i~~~c~L 587 (615)
++--|....|+..+.++-+.++.- .-.|++.++.++||..+..+.++
T Consensus 4 fqlsmiqkaih~tydelgkei~~~g~~~d~i~kaqeeylsals~et~i 51 (58)
T PF13060_consen 4 FQLSMIQKAIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSHETLI 51 (58)
T ss_pred HHHHHHHHHHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444566777788887777643 35699999999999987655543
No 15
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=20.61 E-value=5e+02 Score=23.87 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=21.9
Q ss_pred cCCCchhHHHHhhhhhHHHHHHHHHHHHHhhc-----CCCchhhHHHHHHHHH
Q 007163 164 LGRLSIQGLWFYCQPMLGSMQAVSAVIHKASA-----NNFTGSAVLNLLQSQA 211 (615)
Q Consensus 164 ~~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~-----~~~~g~~lL~~L~~~~ 211 (615)
....+|+.+-+.++.++..|.-=..-+++.+. +..-|-+||.++.=+.
T Consensus 37 ~~ev~lStmaflf~emI~~l~~q~s~~~dfE~kL~~~Gy~vGikLlEL~nfr~ 89 (208)
T COG5128 37 KREVPLSTMAFLFCEMIEYLMEQRSGIQDFEAKLKSIGYEVGIKLLELCNFRR 89 (208)
T ss_pred hccCchHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 34556666555555554443322222222211 1234566666665543
No 16
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=20.51 E-value=1.7e+02 Score=22.16 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=36.2
Q ss_pred hhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 007163 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVM 597 (615)
Q Consensus 546 ~~~VIe~~w~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~ 597 (615)
...||...|.++.+.++.-++..+++.--. -=.-|.++.|++.-++++.++
T Consensus 10 CGkvi~~~w~~y~~rv~~ge~p~~vLDdLG-v~RYCCRRM~lsHvd~id~~~ 60 (63)
T COG1644 10 CGKVIGHKWEEYKRRVEEGEDPGEVLDDLG-VKRYCCRRMLLSHVDLIDELL 60 (63)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHhC-cHHHHHHHHHHHHHHHHHhhc
Confidence 346899999999999998877766654310 113477888888877776653
No 17
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=20.22 E-value=4.4e+02 Score=23.10 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHhhHhHHHHHHHHhhhccCC---CCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 007163 101 DLALQEMAKRIFPLCESFVLTGQFVESRSQF---KNGLVNHAFA---ASLRALLLDYEAMVAQLEHQFR 163 (615)
Q Consensus 101 ~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~---~~g~v~~A~a---~al~~~L~~y~~~v~~lE~~~~ 163 (615)
++|...+-++|+.+..-| ++...|+.... ++|..+.+.+ .++.-+|.+..+.+..||.++.
T Consensus 37 ~~ss~~LR~QILdLSkrY--VKaLAeEn~~~~dgp~~~smagYaDLKktiAVLLddiLqRl~kLE~kvd 103 (138)
T PF15027_consen 37 HQSSAELREQILDLSKRY--VKALAEENKNVVDGPYGASMAGYADLKKTIAVLLDDILQRLVKLESKVD 103 (138)
T ss_pred ccChHHHHHHHHHHHHHH--HHHHHHHcCCCCCCCcchhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 345567778888887544 45555554332 3444444443 3455678888888888887763
Done!