Query 007163
Match_columns 615
No_of_seqs 226 out of 850
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 1.3E-85 4.3E-90 745.2 51.5 533 57-609 1-598 (677)
2 2jxc_B Stonin-2, stoned B; end 78.0 3 0.0001 27.1 3.9 37 3-54 6-42 (45)
3 3t98_B Nucleoporin NUP58/NUP45 51.2 90 0.0031 24.7 8.5 57 134-190 7-67 (93)
4 4e17_B Catenin alpha-1; four h 24.5 62 0.0021 21.1 2.8 17 137-153 21-37 (40)
5 3obv_E Protein diaphanous homo 22.0 4.5E+02 0.015 27.2 10.6 90 102-191 202-305 (457)
6 2wzk_A Cullin-5, CUL-5; UBL co 19.6 4.2E+02 0.014 26.6 9.7 79 523-606 292-379 (391)
7 1twf_J DNA-directed RNA polyme 16.6 43 0.0015 24.9 0.9 51 547-598 11-62 (70)
8 4a64_A Cullin-4B, CUL4B, CUL-4 13.8 4.4E+02 0.015 26.0 8.0 78 523-606 269-351 (354)
9 4e18_B Catenin alpha-1; four h 13.4 1.4E+02 0.0048 21.3 2.8 16 137-152 40-55 (59)
10 4ap2_B Cullin-3, CUL-3; ubiqui 11.1 6.8E+02 0.023 25.3 8.5 78 523-606 295-380 (410)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-85 Score=745.17 Aligned_cols=533 Identities=22% Similarity=0.360 Sum_probs=437.1
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceeEecC---CCCHHHHHHHHHHHhhHhHHHHHHHHhhhccCC--
Q 007163 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF-- 131 (615)
Q Consensus 57 lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~-- 131 (615)
||+|||+||+|++|.||+..+ ..+|.|++ .+++|+++++++++++|.+|+.|++|++..+..
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 689999999999999999876 14799988 567999999999999999999999999964321
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 007163 132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (615)
Q Consensus 132 -------------~~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~l~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (615)
..|+|++|||++|+++|++|+..|+++|+++.. +.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 169999999999999999999999999999964 579999999999999999999999999987667
Q ss_pred CchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCccccccc---------
Q 007163 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESL--------- 268 (615)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~~--------- 268 (615)
.+||++|+.||+.+. +|||.+++++.+|+.+|++||+++|..||++|+|.|||+||||++++...++..
T Consensus 148 ~~G~~lL~~L~~~~~--~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHSC--GGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 899999999999974 999999999999999999999999999999999999999999999865332100
Q ss_pred C------------------c-chhhhhhcccccc-cCCCChhHHH-HHHHHHhhhhHHHHHHhhCCCCCc-----cCccc
Q 007163 269 T------------------Q-DYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQV-----PTSEN 322 (615)
Q Consensus 269 ~------------------~-~~~~~~W~~~y~i-~~~vP~Fl~~-~a~~Il~~GK~l~~lr~~~~~~~~-----p~~e~ 322 (615)
. . +....+|..+|+| .+++|.|+++ +|+|||.|||++|+||+|+..... +..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 0 0 0012479999999 6889999987 999999999999999998754210 00000
Q ss_pred ------ccccccC--CchhhHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhccCc
Q 007163 323 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 394 (615)
Q Consensus 323 ------~~~~~f~--~~~~~~~~I~~~~~~as~~ll~~l~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~ 394 (615)
..+.+.. +...+...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.++..
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0011110 12468889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCc
Q 007163 395 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 474 (615)
Q Consensus 395 ~i~~~~L~~ll~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~s~~~~~~~~~~~~~~l~L~Y~v~wP 474 (615)
+++..+|+..|+.|++.+....+++.+.+.+.+........ ....+.+ .. .........+..|||+|+|+|+||||
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~d~l~L~Y~v~~P 461 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQARE--GP-SRETSPREAPASGWAALGLSYKVQWP 461 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-ccccccc--cc-ccccccccCCccchheEEEEEeCCCh
Confidence 99999999999999998776666676777776654332100 0000000 00 00011223467899999999999999
Q ss_pred ceEeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcchhHHhHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 007163 475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 554 (615)
Q Consensus 475 L~lIit~~~l~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w 554 (615)
|++|||+++|.+|++||+|||++||+++.|+++|..++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus 462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w 540 (677)
T 3rip_A 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF 540 (677)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765543322233444 899999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcCCchHH---HHHHHHHHHHHHHHHHH
Q 007163 555 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDL---LKMVMDAGLEYVRQDRR 609 (615)
Q Consensus 555 ~~l~~~l~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~l---l~~i~~~c~~F~~~~~~ 609 (615)
.+|++++++++|+|+++++|++||++|+++|||+++++ +.+|+++|++||..+++
T Consensus 541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~ 598 (677)
T 3rip_A 541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQ 598 (677)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999997755 45677899999999876
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=77.97 E-value=3 Score=27.10 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=26.8
Q ss_pred CCCCCCCCCcccCCCcCCccccchhhhhhhccccccccccccCCCCCccchH
Q 007163 3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQE 54 (615)
Q Consensus 3 ~~~p~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qE 54 (615)
.++|..|+|...-|||..++- .-.+.||.|++.--.|
T Consensus 6 p~~~e~~Pw~atNPFLde~l~---------------dvqPSPINPFsafFeE 42 (45)
T 2jxc_B 6 PSVTEASPWRATNPFLNETLQ---------------DVQPSPINPFSAFFEE 42 (45)
T ss_dssp CCCSCCCCSCSSCSSSSTTTS---------------CCCCCTTCSCTTHHHH
T ss_pred CccccCCCcccCCcchhhhHH---------------hCCCCCCChHHHhhhh
Confidence 467888999999999998872 2224577777664444
No 3
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=51.16 E-value=90 Score=24.70 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCchhHHHHhhhhhHHHHHHHHHHH
Q 007163 134 GLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVSAVI 190 (615)
Q Consensus 134 g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~----~~lsL~~l~~~~~~~~~~l~~L~~i~ 190 (615)
..+.+-++.-.++.|..|+..|.++|..+.. ..+|.+.|..-++..-..+-.|+.=+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l 67 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQL 67 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999988744 36677777766666555555554433
No 4
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=24.49 E-value=62 Score=21.14 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007163 137 NHAFAASLRALLLDYEA 153 (615)
Q Consensus 137 ~~A~a~al~~~L~~y~~ 153 (615)
++|+..|++.+|.+|..
T Consensus 21 CnavrqALQdLlseY~~ 37 (40)
T 4e17_B 21 CNAVRQALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56777888888888863
No 5
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=22.00 E-value=4.5e+02 Score=27.19 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhHhHHHH--------------HHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 007163 102 LALQEMAKRIFPLCESFVL--------------TGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRL 167 (615)
Q Consensus 102 ~sl~~l~~~il~l~~~~~~--------------l~~fi~~~~~~~~g~v~~A~a~al~~~L~~y~~~v~~lE~~~~~~~l 167 (615)
..++.++.-+|.+|++... |.+..+.++........|-++..+++.--+...+..+|..--....+
T Consensus 202 ~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 202 ENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRV 281 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccC
Confidence 3455667777777765331 22223333222233456666666554333323333333322234578
Q ss_pred chhHHHHhhhhhHHHHHHHHHHHH
Q 007163 168 SIQGLWFYCQPMLGSMQAVSAVIH 191 (615)
Q Consensus 168 sL~~l~~~~~~~~~~l~~L~~i~~ 191 (615)
++..|...+......+..+..-+.
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777666666655554444
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=19.61 E-value=4.2e+02 Score=26.59 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=50.2
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHHHhcc-CC----CHHHHHHHHHHHHHHHHHHHcCCchHHH
Q 007163 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQT-AK----SIDEVIQHHDFFLDKCLRECLLHLPDLL 593 (615)
Q Consensus 523 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~-a~----~ld~l~~~H~~fL~~i~~~c~L~~~~ll 593 (615)
.+++++.|..+ +-.+.+.+..|+.....+- ..+.-++ .. =|+++++.|+.| +.+.+.||-.++...
T Consensus 292 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~----v~~~~~~~~~~~~~~V~~LL~l~~k~-~~lv~~~F~~d~~f~ 366 (391)
T 2wzk_A 292 KLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLAD----MVAAAETITTDSEKYREQLDTLFNRF-SKLVKEAFQDDPRFL 366 (391)
T ss_dssp HHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHH----HHHHGGGTTTCHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHH----HHhccccccCCHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHH
Confidence 34445544433 2455666666666543321 1111111 12 368899999887 566789999999888
Q ss_pred HHHHHHHHHHHHH
Q 007163 594 KMVMDAGLEYVRQ 606 (615)
Q Consensus 594 ~~i~~~c~~F~~~ 606 (615)
+.+-+.|..|.|.
T Consensus 367 ~al~~af~~fiN~ 379 (391)
T 2wzk_A 367 TARDKAYKAVVND 379 (391)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC
Confidence 8888899999884
No 7
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=16.61 E-value=43 Score=24.92 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=37.7
Q ss_pred hhcchhhHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007163 547 FEVLEPNWHVMHNRLQTAK-SIDEVIQHHDFFLDKCLRECLLHLPDLLKMVMD 598 (615)
Q Consensus 547 ~~VIe~~w~~l~~~l~~a~-~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~~ 598 (615)
..||...|.++...+++-. +..+++..-. .=.-|.+..+|+.-++++++++
T Consensus 11 Gkvi~~~we~y~~~~~~g~l~~~~~LD~Lg-~~RyCCRrMllthvdlie~ll~ 62 (70)
T 1twf_J 11 GKVVGDKWESYLNLLQEDELDEGTALSRLG-LKRYCCRRMILTHVDLIEKFLR 62 (70)
T ss_dssp CCBCTTCHHHHHHHHHTSCCCHHHHHHHTT-CCSHHHHHHHHTBCCTHHHHHT
T ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHcC-CcccchhhHHHHHHHHHHHHhc
Confidence 4689999999999999876 7776644211 1136888999998888887754
No 8
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=13.76 E-value=4.4e+02 Score=26.00 Aligned_cols=78 Identities=10% Similarity=0.114 Sum_probs=47.9
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 007163 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKMVM 597 (615)
Q Consensus 523 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l-~~a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~~i~ 597 (615)
.+++++.|..+ +-.+.+.+..|+.....+ ....- +...=++++++.|+.|- .+.+.||-.++.....+-
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~-----iv~~~~~~~~~V~~LL~l~~k~~-~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGST-----IVINPEKDKTMRQELDDFKDKVD-HIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH-----HHHSCCSSSCHHHHHHHHHHHHH-HHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHH-----HHcCccchHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHH
Confidence 34455554433 345667777776553221 11211 22345799999998874 566789999998888777
Q ss_pred HHHHHHHHH
Q 007163 598 DAGLEYVRQ 606 (615)
Q Consensus 598 ~~c~~F~~~ 606 (615)
+.|..|.|.
T Consensus 343 ~af~~fiN~ 351 (354)
T 4a64_A 343 EAFETFINK 351 (354)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCC
Confidence 788888763
No 9
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=13.43 E-value=1.4e+02 Score=21.32 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 007163 137 NHAFAASLRALLLDYE 152 (615)
Q Consensus 137 ~~A~a~al~~~L~~y~ 152 (615)
++|+-.|++.+|.+|.
T Consensus 40 CnavrqALQdLlsEY~ 55 (59)
T 4e18_B 40 CNAVRQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6677777788888875
No 10
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=11.12 E-value=6.8e+02 Score=25.26 Aligned_cols=78 Identities=9% Similarity=0.014 Sum_probs=48.5
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHHHHcCCchHHHH
Q 007163 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQT----AKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 594 (615)
Q Consensus 523 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~----a~~ld~l~~~H~~fL~~i~~~c~L~~~~ll~ 594 (615)
.+++++.|..+ +-.+.+.+..|+.....+ ......+ ..=|+++++.|+.| +.+.+.||-.++....
T Consensus 295 dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~-----iv~~~~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~ 368 (410)
T 4ap2_B 295 DLGCMYKLFSRVPNGLKTMCECMSSYLREQGKA-----LVSEEGEGKNPVDYRQGLDDLKSRF-DRFLLESFNNDRLFKQ 368 (410)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHH-----HHHC------CHHHHHHHHHHHHHH-HHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH-----HHhccccccChHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHH
Confidence 44555555543 345667777776553221 1111111 13468999999877 5667899998888777
Q ss_pred HHHHHHHHHHHH
Q 007163 595 MVMDAGLEYVRQ 606 (615)
Q Consensus 595 ~i~~~c~~F~~~ 606 (615)
.+-+.|..|.|.
T Consensus 369 al~~AF~~fiN~ 380 (410)
T 4ap2_B 369 TIAGDFEYFLNL 380 (410)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 777788888775
Done!