Query 007163
Match_columns 615
No_of_seqs 226 out of 850
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 18:47:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007163.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007163hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 31.4 1E+02 0.0073 23.5 8.5 65 182-249 6-70 (123)
2 d2hyja2 a.121.1.1 (A:83-200) P 20.5 1.5E+02 0.011 21.7 7.7 49 198-249 24-72 (118)
3 d1f5xa_ a.87.1.1 (A:) RhoGEF V 19.6 86 0.0063 26.2 6.4 18 565-582 71-88 (208)
4 d1ldja2 a.118.17.1 (A:17-410) 17.1 1.4E+02 0.01 27.6 7.9 77 523-605 302-388 (394)
5 d1pb6a2 a.121.1.1 (A:86-211) H 13.0 1.1E+02 0.008 23.1 4.8 35 215-249 35-69 (126)
6 d1knya1 a.24.16.1 (A:126-253) 11.8 2.9E+02 0.021 20.8 9.2 34 137-170 3-37 (128)
7 d2id3a2 a.121.1.1 (A:81-203) P 11.3 2.9E+02 0.021 20.4 7.1 50 197-249 23-72 (123)
8 d1kxpd3 a.126.1.1 (D:405-473) 10.9 90 0.0065 21.1 2.8 26 565-593 32-57 (69)
9 d1by1a_ a.87.1.1 (A:) beta-pix 9.7 1.6E+02 0.012 24.3 5.2 17 566-582 60-76 (209)
10 d2i10a2 a.121.1.1 (A:79-194) P 9.5 65 0.0048 24.1 2.1 52 196-250 22-73 (116)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=31.42 E-value=1e+02 Score=23.49 Aligned_cols=65 Identities=9% Similarity=0.069 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 007163 182 SMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (615)
Q Consensus 182 ~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (615)
.+.++..++..+.. .+-.+--+.++...+..-||.++..+...+.....-+..+|...+..|.+.
T Consensus 6 ~~~~~d~~~~~l~~---~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 6 ISSYLDELTEGLRD---VADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHTTT---GGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHh---cCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 44455556655542 222233344454444467999999999999998888888899998888774
No 2
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.48 E-value=1.5e+02 Score=21.72 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=39.8
Q ss_pred CchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 007163 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (615)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (615)
..||.+.+..-+. ...|+.+++.+...+.....-+-+.|..-+..|.+.
T Consensus 24 ~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 24 PGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3477777777654 367889999999999999888999999999999774
No 3
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.59 E-value=86 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 007163 565 KSIDEVIQHHDFFLDKCL 582 (615)
Q Consensus 565 ~~ld~l~~~H~~fL~~i~ 582 (615)
.++++|+..|..|++.+.
T Consensus 71 ~ni~~i~~~h~~~l~~L~ 88 (208)
T d1f5xa_ 71 VNIEELFSVHTHFLKELK 88 (208)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 689999999999999874
No 4
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.07 E-value=1.4e+02 Score=27.59 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=48.3
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHhhhcchhhHHHHHHHhccCC------CHHHHHHHHHHHHHHHHHHHcCCchHH
Q 007163 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAK------SIDEVIQHHDFFLDKCLRECLLHLPDL 592 (615)
Q Consensus 523 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~l~~~l~~a~------~ld~l~~~H~~fL~~i~~~c~L~~~~l 592 (615)
.+.+++.|..+ +-.+.+.+..|+.... ....+...+.. =++++++.|+.| +.+.+.||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G-----~~~i~~~~~~~~~~~~~~V~~ll~l~~~~-~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQG-----LAAIEKCGEAALNDPKMYVQTVLDVHKKY-NALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-----HHHHHHHTTSGGGCHHHHHHHHHHHHHHH-HHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHH-----HHHHHhhhhcccCChHHHHHHHHHHHHHH-HHHHHHHcCCCHHH
Confidence 45555555443 3456667777765543 22223322211 268888888875 67788999999988
Q ss_pred HHHHHHHHHHHHH
Q 007163 593 LKMVMDAGLEYVR 605 (615)
Q Consensus 593 l~~i~~~c~~F~~ 605 (615)
.+.+-+.|..|-|
T Consensus 376 ~~~l~~af~~fiN 388 (394)
T d1ldja2 376 VAALDKACGRFIN 388 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777765
No 5
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=12.98 E-value=1.1e+02 Score=23.11 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 007163 215 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (615)
Q Consensus 215 ~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (615)
+|.+..+..+...+........+.|++|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 44445556666777777778888999999999874
No 6
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=11.76 E-value=2.9e+02 Score=20.81 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCCchh
Q 007163 137 NHAFAASLRALL-LDYEAMVAQLEHQFRLGRLSIQ 170 (615)
Q Consensus 137 ~~A~a~al~~~L-~~y~~~v~~lE~~~~~~~lsL~ 170 (615)
.++|.++|++.| .+-.+.+..+++-..+|+.|..
T Consensus 3 ~e~f~eaI~e~iV~E~yE~~gKlrN~~~~gp~~~L 37 (128)
T d1knya1 3 AQTFHDAICALIVEELFEYAGKWRNIRVQGPTTFL 37 (128)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHCCGGGH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh
Confidence 467777787744 5677777778776777776644
No 7
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=11.34 E-value=2.9e+02 Score=20.45 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.7
Q ss_pred CCchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceec
Q 007163 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (615)
Q Consensus 197 ~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (615)
...|+.++-.+.... ..+|.....+..++...-.-+-.++.+.+..|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666665554433 45678888888888888888889999999999984
No 8
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.89 E-value=90 Score=21.06 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHcCCchHHH
Q 007163 565 KSIDEVIQHHDFFLDKCLRECLLHLPDLL 593 (615)
Q Consensus 565 ~~ld~l~~~H~~fL~~i~~~c~L~~~~ll 593 (615)
..+.+|++.|.+|-.+| |.++.|.+.
T Consensus 32 ~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 32 KELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred HHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 47889999999998876 777777653
No 9
>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.70 E-value=1.6e+02 Score=24.31 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHH
Q 007163 566 SIDEVIQHHDFFLDKCL 582 (615)
Q Consensus 566 ~ld~l~~~H~~fL~~i~ 582 (615)
++++|+..|..|+..+.
T Consensus 60 ni~~l~~~h~~~l~~L~ 76 (209)
T d1by1a_ 60 NLEEICSFQQMLVQSLE 76 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 67899999999988864
No 10
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=9.51 E-value=65 Score=24.05 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=41.1
Q ss_pred CCCchhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHhHHHHHHHHHHHhcceecC
Q 007163 196 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250 (615)
Q Consensus 196 ~~~~g~~lL~~L~~~~~~~~gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~D 250 (615)
+..+||-+.+...+. ...|+.+++.+...+......+...+.+-...|.+.+
T Consensus 22 ~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 22 GQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp ----CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 356788887776553 3578999999999999999999999999999999864
Done!