Query 007165
Match_columns 615
No_of_seqs 597 out of 3288
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 19:50:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 8E-164 2E-168 1311.4 32.8 502 93-605 1-506 (506)
2 PF03141 Methyltransf_29: Puta 99.7 2.2E-17 4.8E-22 179.5 8.5 152 439-607 93-262 (506)
3 COG2226 UbiE Methylase involve 99.6 1.9E-15 4.1E-20 153.1 11.1 101 215-317 51-156 (238)
4 PF08241 Methyltransf_11: Meth 99.6 3.7E-15 8.1E-20 126.9 7.4 93 220-315 1-95 (95)
5 PLN02336 phosphoethanolamine N 99.6 1.7E-14 3.7E-19 160.2 14.3 97 216-318 38-143 (475)
6 PF01209 Ubie_methyltran: ubiE 99.6 5.3E-15 1.2E-19 150.1 8.4 102 215-317 47-153 (233)
7 COG4106 Tam Trans-aconitate me 99.6 1.8E-14 3.9E-19 141.7 10.9 202 214-452 29-231 (257)
8 PRK10258 biotin biosynthesis p 99.5 1.4E-13 3E-18 140.3 11.2 102 215-320 42-143 (251)
9 PLN02233 ubiquinone biosynthes 99.5 1.5E-13 3.4E-18 141.6 10.5 99 215-319 73-184 (261)
10 COG2227 UbiG 2-polyprenyl-3-me 99.4 7.9E-14 1.7E-18 139.9 6.0 104 215-320 59-164 (243)
11 PLN02244 tocopherol O-methyltr 99.4 5.5E-13 1.2E-17 142.6 12.8 103 215-319 118-225 (340)
12 PF13489 Methyltransf_23: Meth 99.4 4.8E-13 1E-17 125.3 9.2 111 194-320 8-118 (161)
13 PRK14103 trans-aconitate 2-met 99.4 4.2E-13 9.1E-18 137.4 9.1 101 215-320 29-129 (255)
14 PLN02396 hexaprenyldihydroxybe 99.4 7.5E-13 1.6E-17 140.3 8.4 100 215-320 131-238 (322)
15 PTZ00098 phosphoethanolamine N 99.4 2.8E-12 6.1E-17 132.4 11.9 122 187-319 32-158 (263)
16 PRK01683 trans-aconitate 2-met 99.4 4E-12 8.7E-17 130.0 11.5 104 215-321 31-134 (258)
17 TIGR02752 MenG_heptapren 2-hep 99.3 1.1E-11 2.3E-16 124.6 12.3 102 216-319 46-153 (231)
18 KOG1540 Ubiquinone biosynthesi 99.3 6.7E-12 1.5E-16 126.4 9.9 102 215-318 100-215 (296)
19 PF13847 Methyltransf_31: Meth 99.3 5.9E-12 1.3E-16 118.7 8.8 101 216-319 4-112 (152)
20 PRK11088 rrmA 23S rRNA methylt 99.3 7E-12 1.5E-16 129.8 10.1 97 216-320 86-184 (272)
21 PRK11036 putative S-adenosyl-L 99.3 6.6E-12 1.4E-16 128.7 9.6 104 215-320 44-152 (255)
22 TIGR02072 BioC biotin biosynth 99.3 3.2E-11 7E-16 120.3 14.2 103 216-320 35-138 (240)
23 PRK05785 hypothetical protein; 99.3 7.2E-12 1.6E-16 126.6 9.4 90 216-311 52-141 (226)
24 PF12847 Methyltransf_18: Meth 99.3 1.1E-11 2.3E-16 109.9 8.1 101 216-317 2-111 (112)
25 TIGR00740 methyltransferase, p 99.3 5.4E-11 1.2E-15 120.6 13.9 98 215-320 53-164 (239)
26 PRK08317 hypothetical protein; 99.3 3.9E-11 8.5E-16 119.4 12.4 118 193-319 5-126 (241)
27 PRK15068 tRNA mo(5)U34 methylt 99.3 1.5E-11 3.3E-16 130.6 9.5 100 216-317 123-226 (322)
28 TIGR00477 tehB tellurite resis 99.2 2.4E-11 5.2E-16 120.0 9.6 98 216-316 31-132 (195)
29 PLN02336 phosphoethanolamine N 99.2 3.4E-11 7.4E-16 133.9 12.0 102 215-319 266-371 (475)
30 PRK11207 tellurite resistance 99.2 2.6E-11 5.7E-16 119.8 9.7 98 216-316 31-133 (197)
31 PF13649 Methyltransf_25: Meth 99.2 5.6E-12 1.2E-16 110.7 4.4 93 219-311 1-101 (101)
32 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.4E-10 3.1E-15 123.8 14.7 131 215-348 113-254 (340)
33 PRK15451 tRNA cmo(5)U34 methyl 99.2 1E-10 2.2E-15 119.5 12.4 100 216-319 57-166 (247)
34 PF08242 Methyltransf_12: Meth 99.2 3.7E-12 8.1E-17 111.1 1.5 93 220-313 1-99 (99)
35 PRK11873 arsM arsenite S-adeno 99.2 5.5E-11 1.2E-15 122.7 10.3 102 215-318 77-184 (272)
36 KOG4300 Predicted methyltransf 99.2 4.7E-11 1E-15 117.0 8.4 102 217-319 78-184 (252)
37 TIGR00452 methyltransferase, p 99.2 6.9E-11 1.5E-15 125.0 9.1 99 216-318 122-226 (314)
38 PRK00107 gidB 16S rRNA methylt 99.2 2.9E-10 6.4E-15 111.9 12.2 116 216-347 46-166 (187)
39 smart00138 MeTrc Methyltransfe 99.1 1.2E-10 2.5E-15 120.5 9.6 132 185-318 70-243 (264)
40 PRK12335 tellurite resistance 99.1 1.2E-10 2.6E-15 121.6 9.6 98 217-317 122-223 (287)
41 PF02353 CMAS: Mycolic acid cy 99.1 9.5E-11 2.1E-15 121.8 8.6 98 214-317 61-166 (273)
42 KOG1270 Methyltransferases [Co 99.1 4E-11 8.7E-16 121.5 5.2 97 216-319 90-197 (282)
43 smart00828 PKS_MT Methyltransf 99.1 1.5E-10 3.3E-15 115.6 8.7 95 217-318 1-105 (224)
44 PF07021 MetW: Methionine bios 99.1 3.4E-10 7.3E-15 110.9 9.5 97 216-320 14-112 (193)
45 PRK00121 trmB tRNA (guanine-N( 99.1 3.2E-10 6.9E-15 112.6 9.6 102 216-319 41-158 (202)
46 COG2230 Cfa Cyclopropane fatty 99.1 4E-10 8.7E-15 116.7 10.5 126 180-318 45-177 (283)
47 PF03848 TehB: Tellurite resis 99.1 3.1E-10 6.8E-15 111.9 9.1 99 216-317 31-133 (192)
48 TIGR03587 Pse_Me-ase pseudamin 99.1 8.9E-10 1.9E-14 109.8 11.2 97 216-317 44-142 (204)
49 PRK06922 hypothetical protein; 99.0 4.2E-10 9.1E-15 127.6 9.1 98 216-319 419-539 (677)
50 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 1.6E-09 3.4E-14 107.2 12.1 104 215-319 39-145 (223)
51 PRK11705 cyclopropane fatty ac 99.0 1.3E-09 2.9E-14 118.5 10.6 98 215-318 167-268 (383)
52 PF05401 NodS: Nodulation prot 99.0 1.5E-09 3.3E-14 106.6 9.8 98 214-318 42-147 (201)
53 COG4976 Predicted methyltransf 99.0 1.3E-10 2.7E-15 115.6 2.2 100 214-317 124-225 (287)
54 PRK11188 rrmJ 23S rRNA methylt 99.0 1.8E-09 3.9E-14 108.0 9.9 91 216-318 52-166 (209)
55 PRK00216 ubiE ubiquinone/menaq 99.0 2.1E-09 4.4E-14 107.5 10.2 102 216-318 52-159 (239)
56 TIGR00138 gidB 16S rRNA methyl 99.0 4.5E-09 9.7E-14 102.9 12.0 96 216-318 43-143 (181)
57 PRK06202 hypothetical protein; 99.0 2.3E-09 5E-14 108.3 10.0 100 215-317 60-166 (232)
58 TIGR00091 tRNA (guanine-N(7)-) 99.0 3.4E-09 7.3E-14 104.5 10.5 101 217-319 18-134 (194)
59 TIGR02469 CbiT precorrin-6Y C5 98.9 8.6E-09 1.9E-13 92.4 11.9 97 216-317 20-122 (124)
60 PRK05134 bifunctional 3-demeth 98.9 5.3E-09 1.1E-13 105.3 10.4 99 215-319 48-153 (233)
61 TIGR00406 prmA ribosomal prote 98.9 1.5E-08 3.2E-13 106.1 13.5 122 185-319 135-261 (288)
62 TIGR02021 BchM-ChlM magnesium 98.9 1.5E-08 3.3E-13 101.3 12.6 93 215-316 55-157 (219)
63 TIGR03840 TMPT_Se_Te thiopurin 98.9 6.8E-09 1.5E-13 104.2 10.0 100 216-316 35-151 (213)
64 TIGR01983 UbiG ubiquinone bios 98.9 4.8E-09 1E-13 104.6 8.8 98 216-319 46-151 (224)
65 TIGR00537 hemK_rel_arch HemK-r 98.9 1.5E-08 3.2E-13 98.3 11.9 119 217-347 21-162 (179)
66 TIGR02081 metW methionine bios 98.9 9.5E-09 2.1E-13 101.0 10.4 96 216-319 14-111 (194)
67 PRK09489 rsmC 16S ribosomal RN 98.9 7E-09 1.5E-13 111.2 9.6 127 217-356 198-333 (342)
68 PF08003 Methyltransf_9: Prote 98.9 8.3E-09 1.8E-13 107.4 9.5 99 215-317 115-219 (315)
69 PRK13944 protein-L-isoaspartat 98.8 1.8E-08 4E-13 100.2 11.4 94 216-317 73-173 (205)
70 PRK08287 cobalt-precorrin-6Y C 98.8 6.1E-08 1.3E-12 94.7 14.3 115 216-345 32-151 (187)
71 KOG3010 Methyltransferase [Gen 98.8 3.2E-09 7E-14 106.6 5.0 115 217-344 35-158 (261)
72 PLN02585 magnesium protoporphy 98.8 6.5E-08 1.4E-12 102.6 14.2 98 216-319 145-252 (315)
73 PRK00517 prmA ribosomal protei 98.8 9.5E-08 2.1E-12 98.0 14.9 114 215-347 119-235 (250)
74 PRK14967 putative methyltransf 98.8 8.7E-08 1.9E-12 96.4 14.3 102 216-319 37-161 (223)
75 PRK14121 tRNA (guanine-N(7)-)- 98.8 1.7E-08 3.7E-13 109.2 9.6 100 216-317 123-235 (390)
76 PRK04266 fibrillarin; Provisio 98.8 8E-08 1.7E-12 97.4 13.4 125 215-347 72-207 (226)
77 KOG1541 Predicted protein carb 98.8 3E-08 6.4E-13 98.5 9.6 97 215-317 50-160 (270)
78 PRK13942 protein-L-isoaspartat 98.8 3.8E-08 8.2E-13 98.6 10.7 95 215-317 76-176 (212)
79 PF05175 MTS: Methyltransferas 98.8 1.2E-08 2.7E-13 98.5 6.5 100 216-318 32-141 (170)
80 PRK13255 thiopurine S-methyltr 98.8 3.6E-08 7.8E-13 99.3 10.0 95 216-315 38-153 (218)
81 TIGR01177 conserved hypothetic 98.7 6.8E-08 1.5E-12 103.0 12.6 119 215-346 182-311 (329)
82 PLN02232 ubiquinone biosynthes 98.7 2.1E-08 4.5E-13 96.0 7.6 72 247-319 4-83 (160)
83 cd02440 AdoMet_MTases S-adenos 98.7 4.2E-08 9E-13 82.6 8.3 93 218-316 1-103 (107)
84 TIGR03534 RF_mod_PrmC protein- 98.7 1.8E-07 4E-12 94.6 14.5 100 217-318 89-218 (251)
85 PLN03075 nicotianamine synthas 98.7 5.7E-08 1.2E-12 101.8 10.7 102 215-317 123-233 (296)
86 TIGR00080 pimt protein-L-isoas 98.7 9E-08 2E-12 95.8 11.5 95 215-317 77-177 (215)
87 PF06325 PrmA: Ribosomal prote 98.7 7.5E-08 1.6E-12 101.1 11.2 144 184-349 136-282 (295)
88 PRK14968 putative methyltransf 98.7 1.4E-07 3E-12 91.1 12.1 121 216-346 24-169 (188)
89 TIGR03438 probable methyltrans 98.7 7.1E-08 1.5E-12 101.7 10.7 103 216-318 64-178 (301)
90 COG2264 PrmA Ribosomal protein 98.7 1.6E-07 3.4E-12 98.4 12.9 119 186-318 139-264 (300)
91 PRK00377 cbiT cobalt-precorrin 98.7 1.4E-07 3.1E-12 93.2 11.8 116 215-343 40-163 (198)
92 TIGR02716 C20_methyl_CrtF C-20 98.7 5.9E-08 1.3E-12 102.1 9.5 99 215-318 149-255 (306)
93 PRK07580 Mg-protoporphyrin IX 98.7 1.2E-07 2.5E-12 94.9 11.0 91 215-314 63-163 (230)
94 PF13659 Methyltransf_26: Meth 98.7 1.7E-08 3.6E-13 90.3 4.3 100 217-318 2-116 (117)
95 PF05219 DREV: DREV methyltran 98.7 1.2E-07 2.6E-12 96.9 10.6 94 214-317 93-188 (265)
96 PRK15001 SAM-dependent 23S rib 98.7 6.4E-08 1.4E-12 105.0 9.1 98 217-317 230-340 (378)
97 PTZ00146 fibrillarin; Provisio 98.6 3.7E-07 8.1E-12 95.4 13.9 97 215-317 132-237 (293)
98 KOG1271 Methyltransferases [Ge 98.6 1.7E-07 3.8E-12 90.7 8.3 103 217-320 69-184 (227)
99 PRK00312 pcm protein-L-isoaspa 98.6 4E-07 8.7E-12 90.7 11.3 96 215-318 78-176 (212)
100 PF06080 DUF938: Protein of un 98.6 8.6E-07 1.9E-11 88.1 13.4 102 218-321 28-145 (204)
101 PRK07402 precorrin-6B methylas 98.6 5.5E-07 1.2E-11 88.7 11.7 99 215-319 40-144 (196)
102 TIGR00438 rrmJ cell division p 98.5 4.4E-07 9.6E-12 88.8 10.4 91 215-317 32-146 (188)
103 TIGR03533 L3_gln_methyl protei 98.5 8.4E-07 1.8E-11 92.9 12.8 102 216-319 122-253 (284)
104 PRK00811 spermidine synthase; 98.5 9.2E-07 2E-11 92.5 12.8 101 215-321 76-195 (283)
105 PRK14966 unknown domain/N5-glu 98.5 1.6E-06 3.4E-11 94.8 14.7 119 217-345 253-400 (423)
106 PF05148 Methyltransf_8: Hypot 98.5 4.8E-07 1E-11 89.9 9.0 112 216-350 73-185 (219)
107 PRK10901 16S rRNA methyltransf 98.5 7.7E-07 1.7E-11 98.3 10.9 105 215-320 244-375 (427)
108 TIGR00536 hemK_fam HemK family 98.4 1.4E-06 3.1E-11 91.0 12.1 101 217-319 116-246 (284)
109 PRK11805 N5-glutamine S-adenos 98.4 1E-06 2.3E-11 93.2 10.7 100 217-318 135-264 (307)
110 KOG1975 mRNA cap methyltransfe 98.4 7.2E-07 1.6E-11 93.1 8.9 105 215-320 117-240 (389)
111 KOG2940 Predicted methyltransf 98.4 1.1E-07 2.3E-12 95.0 2.7 98 217-317 74-174 (325)
112 COG2813 RsmC 16S RNA G1207 met 98.4 9.1E-07 2E-11 92.4 9.5 97 218-318 161-267 (300)
113 TIGR00563 rsmB ribosomal RNA s 98.4 9.3E-07 2E-11 97.6 10.0 105 215-320 238-371 (426)
114 PF03291 Pox_MCEL: mRNA cappin 98.4 5E-07 1.1E-11 96.5 7.5 105 215-320 62-189 (331)
115 COG4123 Predicted O-methyltran 98.4 1.3E-06 2.9E-11 89.2 10.1 120 216-345 45-189 (248)
116 PRK13256 thiopurine S-methyltr 98.4 2.1E-06 4.6E-11 87.0 11.3 101 216-317 44-163 (226)
117 PRK04457 spermidine synthase; 98.3 4.4E-06 9.6E-11 86.5 12.6 100 215-317 66-177 (262)
118 PRK14901 16S rRNA methyltransf 98.3 2.3E-06 5E-11 94.7 11.0 105 215-320 252-387 (434)
119 PRK13943 protein-L-isoaspartat 98.3 2.2E-06 4.8E-11 91.3 9.9 94 216-317 81-180 (322)
120 PRK09328 N5-glutamine S-adenos 98.3 2.2E-06 4.7E-11 88.3 9.4 97 215-317 108-238 (275)
121 TIGR00417 speE spermidine synt 98.3 6.9E-06 1.5E-10 85.3 12.6 101 215-321 72-190 (270)
122 PRK14904 16S rRNA methyltransf 98.3 2.6E-06 5.6E-11 94.6 9.9 104 215-320 250-380 (445)
123 PLN02366 spermidine synthase 98.3 9.3E-06 2E-10 86.1 13.2 106 215-323 91-212 (308)
124 TIGR00446 nop2p NOL1/NOP2/sun 98.3 3.2E-06 6.9E-11 87.6 9.4 105 215-320 71-202 (264)
125 PF01739 CheR: CheR methyltran 98.3 3.3E-06 7.1E-11 83.9 8.9 131 186-318 3-176 (196)
126 TIGR03704 PrmC_rel_meth putati 98.3 1.9E-05 4.2E-10 81.2 14.9 99 217-318 88-217 (251)
127 PRK01581 speE spermidine synth 98.3 9.8E-06 2.1E-10 87.2 13.0 104 215-320 150-271 (374)
128 PRK14903 16S rRNA methyltransf 98.2 2.8E-06 6E-11 94.0 8.7 105 215-320 237-369 (431)
129 KOG3045 Predicted RNA methylas 98.2 5.6E-06 1.2E-10 84.2 9.8 112 215-350 180-291 (325)
130 KOG2361 Predicted methyltransf 98.2 3.8E-06 8.2E-11 84.8 8.5 123 186-320 48-186 (264)
131 PF01135 PCMT: Protein-L-isoas 98.2 3.2E-06 7E-11 84.8 7.7 96 215-318 72-173 (209)
132 PHA03411 putative methyltransf 98.2 4.3E-06 9.3E-11 86.8 8.7 97 217-316 66-182 (279)
133 PF02390 Methyltransf_4: Putat 98.2 2.3E-06 4.9E-11 84.9 6.0 99 218-317 20-133 (195)
134 PRK03612 spermidine synthase; 98.2 6.9E-06 1.5E-10 93.0 10.0 105 215-321 297-419 (521)
135 COG2519 GCD14 tRNA(1-methylade 98.2 1.2E-05 2.6E-10 82.0 10.6 94 215-320 94-198 (256)
136 COG2518 Pcm Protein-L-isoaspar 98.2 9.8E-06 2.1E-10 80.8 9.7 91 215-318 72-170 (209)
137 PRK01544 bifunctional N5-gluta 98.1 1.2E-05 2.6E-10 90.7 11.4 113 459-576 347-477 (506)
138 COG0220 Predicted S-adenosylme 98.1 5.1E-06 1.1E-10 84.3 6.8 99 217-317 50-164 (227)
139 smart00650 rADc Ribosomal RNA 98.1 1.4E-05 3E-10 77.0 9.5 93 216-317 14-113 (169)
140 PRK14902 16S rRNA methyltransf 98.1 1E-05 2.3E-10 89.7 9.3 103 216-320 251-382 (444)
141 PF00891 Methyltransf_2: O-met 98.1 7.2E-06 1.6E-10 83.2 7.3 98 214-318 99-200 (241)
142 PRK10611 chemotaxis methyltran 98.0 2.2E-05 4.8E-10 82.4 10.2 125 184-317 92-262 (287)
143 PLN02781 Probable caffeoyl-CoA 98.0 2E-05 4.4E-10 80.3 9.7 97 216-317 69-178 (234)
144 PF05891 Methyltransf_PK: AdoM 98.0 1.3E-05 2.8E-10 80.3 7.7 135 214-351 54-202 (218)
145 PHA03412 putative methyltransf 98.0 1.8E-05 3.9E-10 80.6 8.5 96 216-312 50-158 (241)
146 COG0500 SmtA SAM-dependent met 98.0 3.2E-05 7E-10 67.3 9.0 99 219-320 52-158 (257)
147 COG2242 CobL Precorrin-6B meth 98.0 4.5E-05 9.7E-10 74.8 9.9 96 215-317 34-135 (187)
148 PRK11783 rlmL 23S rRNA m(2)G24 97.9 2.9E-05 6.2E-10 91.0 9.0 102 216-318 539-657 (702)
149 TIGR00478 tly hemolysin TlyA f 97.9 0.00017 3.6E-09 73.4 13.1 91 215-320 75-174 (228)
150 PRK15128 23S rRNA m(5)C1962 me 97.9 4.4E-05 9.4E-10 83.7 9.4 102 216-318 221-340 (396)
151 PRK13168 rumA 23S rRNA m(5)U19 97.9 7.4E-05 1.6E-09 83.0 11.3 96 216-317 298-400 (443)
152 PF05724 TPMT: Thiopurine S-me 97.9 3.3E-05 7.1E-10 78.0 7.4 97 215-315 37-153 (218)
153 KOG1269 SAM-dependent methyltr 97.9 3.1E-05 6.6E-10 83.8 7.4 98 217-316 112-214 (364)
154 PF07942 N2227: N2227-like pro 97.8 0.00016 3.5E-09 75.2 12.0 133 215-350 56-242 (270)
155 COG2890 HemK Methylase of poly 97.8 5.8E-05 1.3E-09 79.0 8.4 113 218-342 113-254 (280)
156 COG1352 CheR Methylase of chem 97.8 0.00011 2.4E-09 76.4 10.0 131 184-317 67-241 (268)
157 PRK11727 23S rRNA mA1618 methy 97.8 0.00028 6.1E-09 75.2 13.2 98 190-287 89-197 (321)
158 PRK10909 rsmD 16S rRNA m(2)G96 97.8 0.00019 4.2E-09 71.5 10.8 132 176-319 22-161 (199)
159 PF01596 Methyltransf_3: O-met 97.7 7.3E-05 1.6E-09 74.8 7.7 97 216-317 46-155 (205)
160 PF10294 Methyltransf_16: Puta 97.7 7E-05 1.5E-09 72.8 6.9 102 215-319 45-158 (173)
161 PF08704 GCD14: tRNA methyltra 97.7 0.00016 3.4E-09 74.4 9.8 95 215-320 40-149 (247)
162 COG1041 Predicted DNA modifica 97.7 9.4E-05 2E-09 78.9 8.4 100 214-318 196-311 (347)
163 PLN02476 O-methyltransferase 97.7 0.00013 2.8E-09 76.2 9.1 97 216-317 119-228 (278)
164 KOG2899 Predicted methyltransf 97.7 0.00015 3.3E-09 73.5 8.9 97 215-316 58-208 (288)
165 PRK03522 rumB 23S rRNA methylu 97.7 0.00018 3.9E-09 76.4 9.8 99 216-319 174-276 (315)
166 TIGR00479 rumA 23S rRNA (uraci 97.7 0.00018 3.9E-09 79.6 10.0 97 216-317 293-396 (431)
167 PRK01544 bifunctional N5-gluta 97.7 0.00011 2.5E-09 82.9 8.4 101 215-317 347-462 (506)
168 PF11968 DUF3321: Putative met 97.6 0.00026 5.7E-09 71.0 9.8 118 216-350 52-181 (219)
169 PLN02672 methionine S-methyltr 97.6 0.00028 6.1E-09 85.4 11.0 103 216-318 119-279 (1082)
170 KOG1499 Protein arginine N-met 97.6 8.4E-05 1.8E-09 79.0 5.3 98 215-314 60-164 (346)
171 COG4122 Predicted O-methyltran 97.6 0.00025 5.5E-09 71.6 8.5 97 216-317 60-166 (219)
172 KOG1331 Predicted methyltransf 97.6 4.6E-05 9.9E-10 78.9 3.0 99 216-321 46-147 (293)
173 PF12147 Methyltransf_20: Puta 97.5 0.00031 6.8E-09 73.2 8.7 110 209-320 129-252 (311)
174 COG3963 Phospholipid N-methylt 97.5 0.00055 1.2E-08 66.0 8.8 102 216-317 49-156 (194)
175 KOG3987 Uncharacterized conser 97.4 0.00015 3.2E-09 71.9 4.6 124 180-317 83-207 (288)
176 PRK00274 ksgA 16S ribosomal RN 97.4 0.00037 8.1E-09 72.5 7.6 66 216-286 43-112 (272)
177 KOG1661 Protein-L-isoaspartate 97.4 0.001 2.3E-08 66.2 10.1 96 215-317 82-193 (237)
178 PF05185 PRMT5: PRMT5 arginine 97.4 0.00027 5.9E-09 78.6 6.7 95 216-314 187-294 (448)
179 TIGR02085 meth_trns_rumB 23S r 97.4 0.00079 1.7E-08 73.3 10.2 97 217-318 235-335 (374)
180 PRK14896 ksgA 16S ribosomal RN 97.4 0.00043 9.4E-09 71.4 7.6 65 216-287 30-99 (258)
181 KOG2904 Predicted methyltransf 97.4 0.0019 4.1E-08 66.8 11.7 98 216-318 149-286 (328)
182 PF08241 Methyltransf_11: Meth 97.3 7.7E-05 1.7E-09 63.0 0.9 89 464-560 1-95 (95)
183 COG2521 Predicted archaeal met 97.3 0.00037 8.1E-09 70.4 5.8 126 215-348 134-275 (287)
184 COG2263 Predicted RNA methylas 97.3 0.00045 9.7E-09 67.9 6.1 69 215-287 45-116 (198)
185 PLN02823 spermine synthase 97.3 0.0024 5.2E-08 68.7 11.9 101 215-317 103-220 (336)
186 PLN02589 caffeoyl-CoA O-methyl 97.2 0.00068 1.5E-08 69.8 7.2 97 216-317 80-190 (247)
187 TIGR00755 ksgA dimethyladenosi 97.1 0.0024 5.2E-08 65.6 9.7 65 215-286 29-101 (253)
188 PRK00536 speE spermidine synth 97.1 0.0039 8.5E-08 64.8 11.2 97 214-322 71-176 (262)
189 PTZ00338 dimethyladenosine tra 97.1 0.0014 3E-08 69.2 7.6 70 215-286 36-108 (294)
190 COG0421 SpeE Spermidine syntha 97.1 0.0055 1.2E-07 64.4 11.9 106 216-324 77-197 (282)
191 PRK04148 hypothetical protein; 97.1 0.0031 6.7E-08 59.1 8.9 90 216-316 17-108 (134)
192 PF02527 GidB: rRNA small subu 97.0 0.0073 1.6E-07 59.6 11.5 93 218-317 51-148 (184)
193 PF02475 Met_10: Met-10+ like- 97.0 0.0013 2.9E-08 65.6 6.4 127 171-314 67-199 (200)
194 PRK11933 yebU rRNA (cytosine-C 97.0 0.0027 5.8E-08 71.2 9.3 103 215-318 113-243 (470)
195 PRK00107 gidB 16S rRNA methylt 97.0 0.0047 1E-07 61.0 10.0 153 438-606 27-187 (187)
196 TIGR00095 RNA methyltransferas 96.9 0.012 2.6E-07 58.2 12.2 100 216-318 50-160 (189)
197 PF13489 Methyltransf_23: Meth 96.8 0.00028 6E-09 65.9 0.1 96 458-564 21-117 (161)
198 PRK04338 N(2),N(2)-dimethylgua 96.8 0.0022 4.8E-08 70.1 6.6 97 217-319 59-160 (382)
199 KOG2352 Predicted spermine/spe 96.8 0.0027 5.8E-08 70.3 7.1 98 218-317 51-161 (482)
200 PF01170 UPF0020: Putative RNA 96.7 0.0071 1.5E-07 59.2 8.8 101 215-317 28-151 (179)
201 KOG1663 O-methyltransferase [S 96.6 0.014 3.1E-07 59.1 9.8 110 192-317 61-183 (237)
202 TIGR03439 methyl_EasF probable 96.5 0.013 2.7E-07 62.7 10.0 101 217-317 78-197 (319)
203 PF01564 Spermine_synth: Sperm 96.5 0.0055 1.2E-07 63.0 6.9 104 215-320 76-194 (246)
204 PF01728 FtsJ: FtsJ-like methy 96.5 0.0033 7.1E-08 61.0 4.7 92 215-318 23-140 (181)
205 KOG3178 Hydroxyindole-O-methyl 96.5 0.0084 1.8E-07 64.1 8.0 94 216-318 178-276 (342)
206 KOG3201 Uncharacterized conser 96.4 0.0014 3E-08 62.9 1.7 135 216-358 30-175 (201)
207 smart00828 PKS_MT Methyltransf 96.3 0.0027 5.9E-08 63.4 3.4 113 461-581 1-139 (224)
208 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.3 0.0046 1E-07 64.0 5.1 52 265-317 138-199 (256)
209 PF09243 Rsm22: Mitochondrial 96.3 0.027 5.9E-07 58.8 10.7 121 214-343 32-161 (274)
210 TIGR02143 trmA_only tRNA (urac 96.3 0.0072 1.6E-07 65.4 6.5 94 218-318 200-312 (353)
211 COG0293 FtsJ 23S rRNA methylas 96.3 0.047 1E-06 54.7 11.6 92 215-317 45-159 (205)
212 PRK11760 putative 23S rRNA C24 96.3 0.04 8.6E-07 59.2 11.7 93 214-318 210-306 (357)
213 PRK10258 biotin biosynthesis p 96.2 0.0098 2.1E-07 60.7 6.8 101 455-562 38-140 (251)
214 PRK05031 tRNA (uracil-5-)-meth 96.2 0.0095 2.1E-07 64.7 6.8 95 217-318 208-321 (362)
215 PF02384 N6_Mtase: N-6 DNA Met 96.2 0.01 2.2E-07 62.6 6.8 119 193-320 32-186 (311)
216 COG2265 TrmA SAM-dependent met 96.2 0.02 4.4E-07 63.6 9.2 96 215-318 293-397 (432)
217 COG1092 Predicted SAM-dependen 96.1 0.01 2.2E-07 65.0 6.8 104 216-320 218-339 (393)
218 KOG3191 Predicted N6-DNA-methy 96.1 0.034 7.4E-07 54.6 9.4 101 216-318 44-169 (209)
219 KOG1500 Protein arginine N-met 96.1 0.015 3.2E-07 61.7 7.3 94 215-317 177-282 (517)
220 COG0357 GidB Predicted S-adeno 96.1 0.072 1.6E-06 53.9 11.8 117 216-346 68-191 (215)
221 PRK09489 rsmC 16S ribosomal RN 95.9 0.11 2.3E-06 56.2 13.1 97 462-561 199-302 (342)
222 TIGR02987 met_A_Alw26 type II 95.9 0.037 8E-07 62.9 9.9 109 216-324 32-203 (524)
223 COG0030 KsgA Dimethyladenosine 95.8 0.025 5.4E-07 58.7 7.6 66 216-286 31-102 (259)
224 KOG2798 Putative trehalase [Ca 95.7 0.1 2.2E-06 55.2 11.5 71 278-349 258-336 (369)
225 COG1189 Predicted rRNA methyla 95.7 0.25 5.3E-06 50.6 13.9 123 214-346 78-220 (245)
226 PF08123 DOT1: Histone methyla 95.7 0.018 3.9E-07 57.7 5.9 119 187-315 22-156 (205)
227 KOG1709 Guanidinoacetate methy 95.7 0.062 1.3E-06 54.1 9.3 113 193-317 88-206 (271)
228 PF10672 Methyltrans_SAM: S-ad 95.6 0.026 5.5E-07 59.5 6.8 103 216-319 124-240 (286)
229 KOG3420 Predicted RNA methylas 95.6 0.0094 2E-07 56.4 3.0 72 215-287 48-122 (185)
230 TIGR00308 TRM1 tRNA(guanine-26 95.6 0.024 5.2E-07 61.9 6.6 96 217-318 46-148 (374)
231 COG4627 Uncharacterized protei 95.6 0.0037 8.1E-08 59.6 0.3 50 270-320 38-89 (185)
232 KOG2915 tRNA(1-methyladenosine 95.5 0.1 2.2E-06 54.2 10.4 106 196-320 94-213 (314)
233 COG3897 Predicted methyltransf 95.4 0.073 1.6E-06 52.9 8.7 100 214-319 78-181 (218)
234 PLN02233 ubiquinone biosynthes 95.4 0.037 8E-07 57.3 7.0 96 461-563 75-183 (261)
235 PLN02244 tocopherol O-methyltr 95.4 0.013 2.7E-07 63.1 3.7 96 459-562 118-223 (340)
236 PF03602 Cons_hypoth95: Conser 95.3 0.031 6.7E-07 55.0 5.8 133 175-318 9-154 (183)
237 TIGR00138 gidB 16S rRNA methyl 95.3 0.022 4.8E-07 55.8 4.7 111 461-582 44-163 (181)
238 PF13679 Methyltransf_32: Meth 95.3 0.11 2.3E-06 48.8 9.1 100 214-322 24-136 (141)
239 TIGR00537 hemK_rel_arch HemK-r 95.2 0.031 6.6E-07 54.2 5.3 116 461-582 21-161 (179)
240 COG0144 Sun tRNA and rRNA cyto 95.1 0.14 3E-06 55.6 10.6 103 214-317 155-288 (355)
241 TIGR02752 MenG_heptapren 2-hep 95.1 0.043 9.4E-07 55.0 6.2 97 461-563 47-152 (231)
242 COG2520 Predicted methyltransf 95.0 0.075 1.6E-06 57.2 8.2 128 174-317 157-289 (341)
243 PRK14103 trans-aconitate 2-met 95.0 0.03 6.4E-07 57.4 4.9 99 455-561 25-125 (255)
244 PRK08317 hypothetical protein; 95.0 0.04 8.6E-07 54.6 5.6 98 459-562 19-124 (241)
245 PTZ00098 phosphoethanolamine N 94.9 0.032 6.9E-07 57.8 4.8 98 461-563 54-157 (263)
246 PLN02668 indole-3-acetate carb 94.9 0.14 3.1E-06 56.0 9.9 20 274-294 157-176 (386)
247 PF03492 Methyltransf_7: SAM d 94.7 0.064 1.4E-06 57.8 6.7 80 214-294 15-121 (334)
248 PRK11207 tellurite resistance 94.7 0.021 4.5E-07 56.5 2.7 93 461-560 32-132 (197)
249 PF02353 CMAS: Mycolic acid cy 94.7 0.016 3.4E-07 60.6 1.9 101 455-562 60-166 (273)
250 PF05958 tRNA_U5-meth_tr: tRNA 94.5 0.057 1.2E-06 58.5 5.8 54 218-272 199-255 (352)
251 TIGR00477 tehB tellurite resis 94.5 0.03 6.6E-07 55.3 3.4 93 461-560 32-131 (195)
252 KOG0820 Ribosomal RNA adenine 94.5 0.14 2.9E-06 53.4 8.0 68 214-286 57-130 (315)
253 PRK15068 tRNA mo(5)U34 methylt 94.5 0.061 1.3E-06 57.6 5.8 93 461-561 124-225 (322)
254 PRK15001 SAM-dependent 23S rib 94.5 1.4 3E-05 48.4 16.3 95 218-317 47-142 (378)
255 PRK08287 cobalt-precorrin-6Y C 94.3 0.07 1.5E-06 52.0 5.3 112 459-581 31-151 (187)
256 PRK00377 cbiT cobalt-precorrin 94.2 0.12 2.7E-06 50.9 6.9 142 426-581 8-165 (198)
257 PF01269 Fibrillarin: Fibrilla 94.1 0.19 4E-06 51.1 8.0 126 215-346 73-208 (229)
258 PRK00121 trmB tRNA (guanine-N( 94.1 0.07 1.5E-06 53.0 4.9 121 460-582 41-177 (202)
259 PRK11705 cyclopropane fatty ac 94.0 0.035 7.6E-07 60.8 2.9 95 461-562 169-267 (383)
260 TIGR00452 methyltransferase, p 94.0 0.1 2.2E-06 55.7 6.2 94 461-561 123-224 (314)
261 PRK11783 rlmL 23S rRNA m(2)G24 93.9 0.17 3.8E-06 59.7 8.4 117 461-583 540-677 (702)
262 PRK12335 tellurite resistance 93.8 0.032 7E-07 58.4 2.0 111 462-581 123-254 (287)
263 TIGR00406 prmA ribosomal prote 93.6 0.092 2E-06 55.2 5.1 111 461-581 161-278 (288)
264 COG0742 N6-adenine-specific me 93.6 0.64 1.4E-05 46.1 10.6 134 176-318 11-155 (187)
265 PRK11036 putative S-adenosyl-L 93.6 0.045 9.7E-07 56.2 2.6 93 461-561 46-148 (255)
266 PRK00517 prmA ribosomal protei 93.5 0.19 4.1E-06 51.6 7.0 105 461-581 121-233 (250)
267 PF09445 Methyltransf_15: RNA 93.3 0.097 2.1E-06 50.7 4.2 68 218-286 2-76 (163)
268 PRK06202 hypothetical protein; 93.1 0.27 6E-06 49.5 7.4 104 456-563 57-167 (232)
269 PRK14968 putative methyltransf 93.1 0.22 4.8E-06 47.8 6.5 117 460-581 24-168 (188)
270 PRK01683 trans-aconitate 2-met 92.9 0.21 4.5E-06 51.1 6.2 100 455-561 27-129 (258)
271 PF03059 NAS: Nicotianamine sy 92.9 0.46 9.9E-06 49.9 8.8 103 215-317 120-230 (276)
272 TIGR02072 BioC biotin biosynth 92.9 0.098 2.1E-06 52.0 3.7 96 461-562 36-135 (240)
273 TIGR01934 MenG_MenH_UbiE ubiqu 92.8 0.22 4.8E-06 49.0 6.1 99 459-563 39-144 (223)
274 PF13578 Methyltransf_24: Meth 92.7 0.031 6.8E-07 49.2 -0.2 94 220-317 1-105 (106)
275 PRK00050 16S rRNA m(4)C1402 me 92.7 0.14 2.9E-06 54.4 4.6 71 216-286 20-97 (296)
276 PF04816 DUF633: Family of unk 92.6 0.84 1.8E-05 45.8 10.0 116 219-349 1-123 (205)
277 PLN02396 hexaprenyldihydroxybe 92.6 0.17 3.7E-06 54.2 5.2 94 462-562 134-235 (322)
278 KOG3115 Methyltransferase-like 92.5 0.19 4.1E-06 50.3 4.9 27 217-243 62-92 (249)
279 PF05401 NodS: Nodulation prot 92.1 0.087 1.9E-06 52.5 2.2 152 438-604 23-193 (201)
280 PF04672 Methyltransf_19: S-ad 92.1 0.28 6.2E-06 51.1 5.9 101 215-319 68-192 (267)
281 PRK13699 putative methylase; P 91.9 0.45 9.7E-06 48.5 7.1 83 265-360 4-102 (227)
282 TIGR00740 methyltransferase, p 91.7 0.1 2.2E-06 52.9 2.2 96 461-563 55-162 (239)
283 TIGR01983 UbiG ubiquinone bios 91.7 0.4 8.7E-06 47.6 6.5 94 460-563 46-150 (224)
284 PF00398 RrnaAD: Ribosomal RNA 91.7 0.45 9.7E-06 49.3 7.0 100 193-309 16-123 (262)
285 TIGR03534 RF_mod_PrmC protein- 91.7 0.33 7.2E-06 49.0 6.0 117 461-581 89-236 (251)
286 PRK05134 bifunctional 3-demeth 91.6 0.16 3.4E-06 51.1 3.5 95 461-562 50-151 (233)
287 smart00138 MeTrc Methyltransfe 91.4 0.39 8.5E-06 49.9 6.2 135 428-566 68-246 (264)
288 cd02440 AdoMet_MTases S-adenos 91.4 0.26 5.7E-06 40.7 4.1 95 462-561 1-103 (107)
289 PF12847 Methyltransf_18: Meth 91.2 0.14 2.9E-06 45.0 2.2 96 462-562 4-111 (112)
290 PRK09328 N5-glutamine S-adenos 91.1 0.74 1.6E-05 47.3 7.9 135 461-605 110-275 (275)
291 PF08242 Methyltransf_12: Meth 91.0 0.17 3.6E-06 43.7 2.6 90 464-558 1-99 (99)
292 PRK15451 tRNA cmo(5)U34 methyl 90.9 0.19 4.2E-06 51.4 3.3 96 461-563 58-165 (247)
293 PF01189 Nol1_Nop2_Fmu: NOL1/N 90.6 0.17 3.8E-06 53.1 2.7 102 215-317 85-219 (283)
294 COG4076 Predicted RNA methylas 90.5 0.3 6.6E-06 48.3 4.1 91 217-314 34-132 (252)
295 COG5459 Predicted rRNA methyla 90.3 2.8 6.2E-05 45.3 11.3 106 215-320 113-228 (484)
296 COG0116 Predicted N6-adenine-s 90.3 1.3 2.9E-05 48.4 9.1 102 217-319 193-346 (381)
297 KOG2198 tRNA cytosine-5-methyl 90.3 1.3 2.9E-05 48.0 9.0 120 195-317 138-296 (375)
298 TIGR00438 rrmJ cell division p 90.2 0.72 1.6E-05 45.0 6.6 129 461-604 34-186 (188)
299 COG4262 Predicted spermidine s 89.9 1.2 2.5E-05 48.4 8.1 107 215-323 289-413 (508)
300 PF01209 Ubie_methyltran: ubiE 89.8 0.32 7E-06 49.7 3.8 116 437-563 32-154 (233)
301 PTZ00146 fibrillarin; Provisio 89.8 1.1 2.3E-05 47.5 7.7 97 455-560 130-235 (293)
302 PRK11088 rrmA 23S rRNA methylt 89.7 0.97 2.1E-05 46.9 7.4 101 460-574 86-194 (272)
303 COG1889 NOP1 Fibrillarin-like 89.6 11 0.00023 38.2 14.0 149 187-347 53-211 (231)
304 KOG2187 tRNA uracil-5-methyltr 89.5 0.37 8E-06 54.1 4.2 54 217-271 385-441 (534)
305 COG1064 AdhP Zn-dependent alco 89.4 0.86 1.9E-05 49.2 6.8 96 214-319 165-261 (339)
306 PF00891 Methyltransf_2: O-met 89.3 0.42 9E-06 48.5 4.2 100 454-564 95-201 (241)
307 PRK13944 protein-L-isoaspartat 89.3 0.34 7.4E-06 48.2 3.5 90 461-561 74-172 (205)
308 COG4798 Predicted methyltransf 89.2 1.1 2.5E-05 44.7 6.8 103 215-319 48-168 (238)
309 PF06859 Bin3: Bicoid-interact 88.8 0.26 5.6E-06 44.7 2.0 38 279-317 1-44 (110)
310 PF05971 Methyltransf_10: Prot 88.7 1.3 2.8E-05 47.0 7.5 94 191-287 81-185 (299)
311 PRK11524 putative methyltransf 88.5 1.1 2.5E-05 46.8 6.9 54 264-317 10-80 (284)
312 TIGR01444 fkbM_fam methyltrans 88.4 0.58 1.3E-05 43.0 4.2 32 218-249 1-36 (143)
313 PRK11873 arsM arsenite S-adeno 88.3 0.57 1.2E-05 48.4 4.4 40 519-562 144-183 (272)
314 PRK06922 hypothetical protein; 88.2 0.32 7E-06 56.6 2.7 101 461-563 420-538 (677)
315 PRK14967 putative methyltransf 88.1 0.98 2.1E-05 45.4 5.9 117 461-581 38-179 (223)
316 PRK04266 fibrillarin; Provisio 88.0 1.2 2.7E-05 45.3 6.6 136 455-606 70-226 (226)
317 TIGR00536 hemK_fam HemK family 88.0 1.7 3.7E-05 45.5 7.8 136 461-606 116-283 (284)
318 PRK11188 rrmJ 23S rRNA methylt 87.8 1.4 3E-05 44.2 6.7 128 461-605 53-206 (209)
319 KOG1122 tRNA and rRNA cytosine 87.6 2.2 4.8E-05 47.1 8.4 105 213-319 239-373 (460)
320 TIGR00091 tRNA (guanine-N(7)-) 87.5 0.71 1.5E-05 45.5 4.4 116 461-580 18-152 (194)
321 PF06962 rRNA_methylase: Putat 87.4 1.1 2.3E-05 42.5 5.3 74 262-341 27-113 (140)
322 PRK00216 ubiE ubiquinone/menaq 86.8 0.67 1.5E-05 46.1 3.8 96 461-562 53-158 (239)
323 PRK05785 hypothetical protein; 86.3 1.3 2.9E-05 44.8 5.7 106 438-556 35-141 (226)
324 PF01728 FtsJ: FtsJ-like methy 86.1 0.65 1.4E-05 44.9 3.2 142 455-605 19-180 (181)
325 PRK13942 protein-L-isoaspartat 86.1 0.57 1.2E-05 46.9 2.9 87 461-561 78-175 (212)
326 TIGR00080 pimt protein-L-isoas 85.7 0.58 1.3E-05 46.8 2.7 90 461-561 79-176 (215)
327 PLN02232 ubiquinone biosynthes 85.6 0.68 1.5E-05 44.2 3.0 49 512-564 35-83 (160)
328 KOG4589 Cell division protein 85.0 5 0.00011 40.0 8.6 93 215-319 69-186 (232)
329 PF03269 DUF268: Caenorhabditi 85.0 0.62 1.3E-05 45.1 2.4 42 278-320 62-114 (177)
330 PLN02490 MPBQ/MSBQ methyltrans 84.7 0.94 2E-05 49.0 3.9 115 461-581 115-251 (340)
331 TIGR02716 C20_methyl_CrtF C-20 84.7 0.97 2.1E-05 47.6 4.0 104 455-563 145-255 (306)
332 PRK11805 N5-glutamine S-adenos 84.4 1.2 2.6E-05 47.4 4.6 112 461-577 135-277 (307)
333 COG3129 Predicted SAM-dependen 83.8 3 6.6E-05 42.8 6.7 99 189-291 54-164 (292)
334 TIGR03704 PrmC_rel_meth putati 83.7 1.4 3.1E-05 45.3 4.7 120 461-582 88-236 (251)
335 PRK04457 spermidine synthase; 83.2 5.3 0.00011 41.5 8.6 138 458-605 65-216 (262)
336 PF10354 DUF2431: Domain of un 82.8 10 0.00022 36.8 9.8 116 222-347 3-149 (166)
337 PF13847 Methyltransf_31: Meth 81.9 1.4 2.9E-05 41.3 3.3 96 461-564 5-112 (152)
338 KOG2793 Putative N2,N2-dimethy 81.8 6.4 0.00014 40.8 8.4 38 280-318 163-200 (248)
339 cd08283 FDH_like_1 Glutathione 80.3 6.2 0.00013 42.8 8.3 101 215-318 184-307 (386)
340 TIGR02469 CbiT precorrin-6Y C5 79.6 4.6 9.9E-05 35.6 5.8 90 461-561 21-121 (124)
341 COG2226 UbiE Methylase involve 79.6 1.7 3.7E-05 44.7 3.4 116 437-564 36-158 (238)
342 PF01861 DUF43: Protein of unk 79.4 26 0.00057 36.2 11.8 125 215-347 44-175 (243)
343 PRK00312 pcm protein-L-isoaspa 79.3 2.4 5.1E-05 42.1 4.2 87 460-561 79-174 (212)
344 PRK09424 pntA NAD(P) transhydr 78.8 7.1 0.00015 44.6 8.3 99 214-317 163-285 (509)
345 KOG1099 SAM-dependent methyltr 78.7 2.4 5.3E-05 43.4 4.0 110 216-341 42-183 (294)
346 COG2890 HemK Methylase of poly 78.0 8.2 0.00018 40.6 8.0 152 435-605 94-276 (280)
347 TIGR03533 L3_gln_methyl protei 77.7 3.4 7.4E-05 43.4 5.1 115 461-580 123-268 (284)
348 PRK14966 unknown domain/N5-glu 76.5 11 0.00023 42.2 8.6 137 462-606 254-419 (423)
349 PF05175 MTS: Methyltransferas 76.4 3 6.4E-05 40.1 3.9 112 460-575 32-155 (170)
350 PF03514 GRAS: GRAS domain fam 76.3 25 0.00055 38.5 11.5 105 214-320 109-246 (374)
351 cd08254 hydroxyacyl_CoA_DH 6-h 76.2 7.2 0.00016 40.5 7.1 92 216-317 166-263 (338)
352 PF03848 TehB: Tellurite resis 75.6 1.5 3.2E-05 43.7 1.6 93 462-561 33-132 (192)
353 COG0286 HsdM Type I restrictio 75.0 16 0.00035 41.5 9.9 119 194-320 173-329 (489)
354 PF07091 FmrO: Ribosomal RNA m 74.9 35 0.00076 35.5 11.3 128 215-346 105-240 (251)
355 PRK09880 L-idonate 5-dehydroge 74.4 8.8 0.00019 40.8 7.2 94 216-318 170-267 (343)
356 PF04989 CmcI: Cephalosporin h 74.2 5.2 0.00011 40.3 5.0 99 216-317 33-147 (206)
357 KOG1562 Spermidine synthase [A 72.9 8.6 0.00019 40.9 6.4 104 214-320 120-239 (337)
358 TIGR00417 speE spermidine synt 72.0 4.8 0.0001 41.8 4.4 103 457-561 70-185 (270)
359 COG2384 Predicted SAM-dependen 72.0 66 0.0014 32.9 12.2 117 218-349 19-142 (226)
360 KOG0822 Protein kinase inhibit 71.8 8.4 0.00018 43.9 6.3 99 216-316 368-477 (649)
361 PF10294 Methyltransf_16: Puta 71.5 5.1 0.00011 38.8 4.2 99 456-561 42-155 (173)
362 TIGR02081 metW methionine bios 71.3 3.5 7.6E-05 40.3 3.1 87 462-554 16-104 (194)
363 PRK14121 tRNA (guanine-N(7)-)- 70.8 7.1 0.00015 43.1 5.5 111 461-577 124-251 (390)
364 KOG3045 Predicted RNA methylas 70.0 2.7 5.9E-05 43.7 2.0 100 463-581 184-286 (325)
365 COG4627 Uncharacterized protei 69.8 1.2 2.5E-05 43.1 -0.7 46 512-561 40-85 (185)
366 TIGR02021 BchM-ChlM magnesium 67.9 7.4 0.00016 38.7 4.6 97 460-564 56-160 (219)
367 TIGR00563 rsmB ribosomal RNA s 67.6 10 0.00023 42.1 6.1 109 461-572 240-385 (426)
368 PF01555 N6_N4_Mtase: DNA meth 67.3 7.4 0.00016 38.0 4.4 56 292-358 31-87 (231)
369 COG4301 Uncharacterized conser 67.1 27 0.00059 36.4 8.3 100 216-317 79-193 (321)
370 TIGR01177 conserved hypothetic 65.5 8.1 0.00018 41.3 4.6 111 462-579 185-309 (329)
371 PRK00811 spermidine synthase; 65.3 8.3 0.00018 40.5 4.5 104 456-561 73-190 (283)
372 KOG2920 Predicted methyltransf 65.0 3.5 7.6E-05 43.3 1.6 40 279-319 196-236 (282)
373 KOG0024 Sorbitol dehydrogenase 64.6 21 0.00046 38.5 7.3 97 214-317 168-273 (354)
374 PRK07580 Mg-protoporphyrin IX 64.5 10 0.00022 37.6 4.8 102 459-565 63-169 (230)
375 cd08245 CAD Cinnamyl alcohol d 64.2 24 0.00051 36.8 7.7 93 216-317 163-256 (330)
376 PF06325 PrmA: Ribosomal prote 63.8 10 0.00022 40.3 4.9 144 435-606 146-295 (295)
377 PLN02781 Probable caffeoyl-CoA 63.4 9.1 0.0002 39.0 4.3 96 455-561 64-177 (234)
378 TIGR02822 adh_fam_2 zinc-bindi 63.2 26 0.00057 37.1 8.0 89 215-317 165-254 (329)
379 PRK01747 mnmC bifunctional tRN 63.0 9.6 0.00021 44.8 5.0 53 264-316 150-205 (662)
380 PF11899 DUF3419: Protein of u 62.8 16 0.00034 40.3 6.3 70 247-317 261-334 (380)
381 PRK01581 speE spermidine synth 62.6 20 0.00043 39.4 6.9 149 456-609 147-317 (374)
382 PRK14902 16S rRNA methyltransf 62.4 7.5 0.00016 43.4 3.7 99 461-561 252-378 (444)
383 KOG2730 Methylase [General fun 62.2 3.3 7.3E-05 42.2 0.8 89 217-311 96-196 (263)
384 TIGR03587 Pse_Me-ase pseudamin 62.1 11 0.00025 37.5 4.6 93 461-561 45-141 (204)
385 PF07757 AdoMet_MTase: Predict 61.5 8.1 0.00018 35.1 3.1 22 216-237 59-80 (112)
386 PF05148 Methyltransf_8: Hypot 61.2 3.5 7.6E-05 41.7 0.8 97 461-581 74-180 (219)
387 TIGR00446 nop2p NOL1/NOP2/sun 60.4 13 0.00027 38.6 4.8 97 462-561 74-198 (264)
388 KOG2361 Predicted methyltransf 60.3 5.2 0.00011 41.3 1.8 50 511-564 136-185 (264)
389 TIGR00561 pntA NAD(P) transhyd 59.7 15 0.00033 42.0 5.5 96 215-315 163-282 (511)
390 cd05188 MDR Medium chain reduc 59.5 29 0.00062 34.4 7.1 92 215-318 134-233 (271)
391 PF00107 ADH_zinc_N: Zinc-bind 59.5 7.4 0.00016 34.9 2.5 86 225-319 1-91 (130)
392 cd08234 threonine_DH_like L-th 59.1 38 0.00082 35.3 8.2 94 215-318 159-258 (334)
393 TIGR03438 probable methyltrans 57.1 15 0.00033 38.7 4.8 98 461-561 65-176 (301)
394 cd00315 Cyt_C5_DNA_methylase C 56.7 1E+02 0.0022 32.1 10.8 126 218-348 2-141 (275)
395 PF13649 Methyltransf_25: Meth 56.3 1.2 2.6E-05 38.7 -3.1 92 463-556 1-101 (101)
396 COG0500 SmtA SAM-dependent met 56.0 34 0.00074 29.0 6.1 95 463-565 52-158 (257)
397 cd08232 idonate-5-DH L-idonate 56.0 35 0.00075 35.7 7.3 94 215-317 165-262 (339)
398 KOG1596 Fibrillarin and relate 55.9 59 0.0013 33.9 8.4 98 215-319 156-263 (317)
399 cd08230 glucose_DH Glucose deh 53.4 33 0.00071 36.5 6.7 91 216-317 173-269 (355)
400 TIGR00853 pts-lac PTS system, 53.2 31 0.00068 30.2 5.4 75 217-314 4-78 (95)
401 TIGR02825 B4_12hDH leukotriene 52.7 53 0.0012 34.3 8.0 93 215-317 138-237 (325)
402 KOG4058 Uncharacterized conser 51.3 27 0.00059 33.7 4.9 109 196-315 58-170 (199)
403 PF02390 Methyltransf_4: Putat 51.1 7.7 0.00017 38.5 1.3 112 462-577 20-149 (195)
404 TIGR03451 mycoS_dep_FDH mycoth 49.7 48 0.001 35.4 7.2 93 215-317 176-276 (358)
405 TIGR03366 HpnZ_proposed putati 47.9 44 0.00096 34.3 6.4 93 215-317 120-218 (280)
406 PLN03154 putative allyl alcoho 47.0 65 0.0014 34.4 7.8 93 215-317 158-258 (348)
407 KOG1227 Putative methyltransfe 47.0 14 0.0003 39.5 2.4 129 167-312 154-290 (351)
408 cd08255 2-desacetyl-2-hydroxye 46.9 67 0.0015 32.4 7.5 92 215-317 97-190 (277)
409 cd08237 ribitol-5-phosphate_DH 46.8 45 0.00098 35.4 6.4 88 215-317 163-256 (341)
410 cd05564 PTS_IIB_chitobiose_lic 46.5 36 0.00079 29.8 4.7 79 222-322 4-83 (96)
411 PRK09590 celB cellobiose phosp 45.7 49 0.0011 29.7 5.5 82 218-322 3-87 (104)
412 cd08239 THR_DH_like L-threonin 45.0 59 0.0013 34.1 6.9 94 216-318 164-263 (339)
413 COG2813 RsmC 16S RNA G1207 met 44.3 1.5E+02 0.0034 31.6 9.7 127 462-605 161-299 (300)
414 KOG4300 Predicted methyltransf 44.3 14 0.0003 37.6 1.8 40 520-564 144-184 (252)
415 PF02005 TRM: N2,N2-dimethylgu 43.7 27 0.00058 38.5 4.1 130 180-319 13-156 (377)
416 cd05565 PTS_IIB_lactose PTS_II 43.6 36 0.00078 30.3 4.2 77 219-318 3-79 (99)
417 cd08281 liver_ADH_like1 Zinc-d 43.3 54 0.0012 35.2 6.5 92 216-317 192-290 (371)
418 TIGR00027 mthyl_TIGR00027 meth 43.1 3.1E+02 0.0067 28.4 11.8 103 216-319 82-199 (260)
419 PRK14903 16S rRNA methyltransf 43.0 31 0.00067 38.6 4.6 97 461-561 239-365 (431)
420 TIGR01202 bchC 2-desacetyl-2-h 42.9 61 0.0013 33.9 6.6 85 216-317 145-231 (308)
421 PLN02366 spermidine synthase 41.9 27 0.00059 37.3 3.8 103 457-561 89-205 (308)
422 PF14740 DUF4471: Domain of un 41.3 41 0.00088 35.8 4.9 63 277-345 220-284 (289)
423 KOG2651 rRNA adenine N-6-methy 40.9 30 0.00066 38.1 3.9 29 215-243 153-184 (476)
424 PRK14904 16S rRNA methyltransf 40.3 45 0.00097 37.3 5.4 97 461-562 252-377 (445)
425 COG1565 Uncharacterized conser 40.1 27 0.00059 38.1 3.5 54 174-235 44-97 (370)
426 TIGR03201 dearomat_had 6-hydro 39.9 74 0.0016 33.8 6.8 94 215-317 166-272 (349)
427 KOG2539 Mitochondrial/chloropl 39.8 60 0.0013 36.7 6.1 105 214-320 199-318 (491)
428 PRK13255 thiopurine S-methyltr 39.5 27 0.00059 35.2 3.2 94 462-560 40-153 (218)
429 KOG2671 Putative RNA methylase 39.2 45 0.00098 36.4 4.8 73 214-286 207-291 (421)
430 PF13578 Methyltransf_24: Meth 38.6 5.1 0.00011 35.0 -2.0 39 519-562 67-105 (106)
431 PRK10742 putative methyltransf 37.8 85 0.0018 32.7 6.5 68 218-287 91-172 (250)
432 PF13051 DUF3912: Protein of u 37.5 7.8 0.00017 31.0 -0.8 10 505-514 57-66 (68)
433 PF07629 DUF1590: Protein of u 36.0 21 0.00045 24.7 1.1 19 120-138 5-23 (32)
434 PRK03612 spermidine synthase; 35.9 43 0.00093 38.4 4.4 122 458-580 296-438 (521)
435 TIGR03840 TMPT_Se_Te thiopurin 35.7 38 0.00082 34.1 3.5 95 461-560 36-150 (213)
436 PRK10309 galactitol-1-phosphat 35.6 1.1E+02 0.0024 32.3 7.3 94 215-317 160-260 (347)
437 cd08261 Zn_ADH7 Alcohol dehydr 35.3 1.2E+02 0.0027 31.6 7.5 91 215-317 159-258 (337)
438 COG0604 Qor NADPH:quinone redu 35.2 70 0.0015 34.3 5.7 93 216-318 143-242 (326)
439 cd00401 AdoHcyase S-adenosyl-L 35.2 64 0.0014 36.0 5.5 88 215-318 201-290 (413)
440 PLN02740 Alcohol dehydrogenase 35.0 1E+02 0.0022 33.3 7.0 94 215-317 198-300 (381)
441 COG1063 Tdh Threonine dehydrog 35.0 1.1E+02 0.0023 33.1 7.1 95 217-319 170-271 (350)
442 cd08294 leukotriene_B4_DH_like 34.8 1.1E+02 0.0023 31.7 6.9 92 215-317 143-241 (329)
443 COG4123 Predicted O-methyltran 34.5 87 0.0019 32.6 6.0 123 459-584 44-192 (248)
444 PRK10901 16S rRNA methyltransf 34.5 73 0.0016 35.4 5.9 99 461-561 246-371 (427)
445 COG3510 CmcI Cephalosporin hyd 34.4 58 0.0012 32.9 4.4 100 215-319 69-182 (237)
446 cd05278 FDH_like Formaldehyde 34.2 1E+02 0.0023 32.1 6.8 91 215-317 167-267 (347)
447 KOG1501 Arginine N-methyltrans 34.1 85 0.0018 35.4 6.0 54 193-248 46-102 (636)
448 TIGR00006 S-adenosyl-methyltra 34.0 79 0.0017 33.9 5.8 43 216-259 21-63 (305)
449 cd08295 double_bond_reductase_ 33.9 1.3E+02 0.0028 31.6 7.5 93 215-317 151-251 (338)
450 PF11312 DUF3115: Protein of u 33.4 61 0.0013 34.8 4.7 60 262-322 176-248 (315)
451 cd05285 sorbitol_DH Sorbitol d 33.2 1.4E+02 0.003 31.4 7.6 94 215-317 162-265 (343)
452 PLN02586 probable cinnamyl alc 33.1 72 0.0016 34.2 5.4 91 216-317 184-278 (360)
453 PF02636 Methyltransf_28: Puta 32.8 43 0.00092 34.3 3.4 19 217-235 20-38 (252)
454 PHA01634 hypothetical protein 32.5 49 0.0011 31.2 3.4 64 215-285 28-98 (156)
455 PRK13943 protein-L-isoaspartat 32.2 39 0.00085 36.3 3.2 87 461-562 82-180 (322)
456 PRK09548 PTS system ascorbate- 31.9 1.3E+02 0.0029 35.2 7.4 59 214-287 504-562 (602)
457 PF07942 N2227: N2227-like pro 31.6 31 0.00067 36.3 2.2 67 510-581 152-237 (270)
458 PF02527 GidB: rRNA small subu 31.5 1.3E+02 0.0027 29.8 6.3 134 436-581 27-170 (184)
459 PRK07402 precorrin-6B methylas 31.3 53 0.0012 32.0 3.7 108 461-579 42-160 (196)
460 PRK10310 PTS system galactitol 31.1 79 0.0017 27.6 4.3 54 219-287 5-58 (94)
461 cd08285 NADP_ADH NADP(H)-depen 30.9 1.4E+02 0.0031 31.4 7.2 93 215-317 166-266 (351)
462 PRK10611 chemotaxis methyltran 30.8 25 0.00053 37.3 1.3 46 519-566 221-266 (287)
463 cd08236 sugar_DH NAD(P)-depend 30.5 1.6E+02 0.0035 30.7 7.5 92 216-317 160-258 (343)
464 PF01739 CheR: CheR methyltran 30.0 27 0.00059 34.8 1.4 56 508-566 124-179 (196)
465 cd08242 MDR_like Medium chain 29.7 1.9E+02 0.004 29.9 7.7 87 215-316 155-244 (319)
466 PLN02827 Alcohol dehydrogenase 29.7 1.3E+02 0.0028 32.6 6.7 94 215-317 193-295 (378)
467 PRK00536 speE spermidine synth 28.8 53 0.0012 34.3 3.4 37 519-564 137-173 (262)
468 cd08298 CAD2 Cinnamyl alcohol 28.8 2.1E+02 0.0046 29.6 7.9 86 216-317 168-256 (329)
469 COG1867 TRM1 N2,N2-dimethylgua 28.7 99 0.0022 34.0 5.4 97 216-319 53-156 (380)
470 TIGR02819 fdhA_non_GSH formald 28.5 2E+02 0.0044 31.4 8.0 98 216-317 186-299 (393)
471 COG2230 Cfa Cyclopropane fatty 28.5 83 0.0018 33.4 4.7 96 455-561 70-175 (283)
472 PRK14901 16S rRNA methyltransf 28.4 42 0.0009 37.4 2.6 112 461-576 254-402 (434)
473 PF14881 Tubulin_3: Tubulin do 28.2 43 0.00093 33.0 2.4 32 460-491 77-117 (180)
474 KOG1253 tRNA methyltransferase 28.2 50 0.0011 37.5 3.1 100 215-319 109-218 (525)
475 KOG3010 Methyltransferase [Gen 28.0 39 0.00085 35.1 2.1 113 458-580 32-158 (261)
476 cd08279 Zn_ADH_class_III Class 27.1 2.2E+02 0.0047 30.3 7.8 90 216-317 183-282 (363)
477 cd08293 PTGR2 Prostaglandin re 26.9 1.5E+02 0.0032 31.0 6.4 90 217-317 156-254 (345)
478 PF12273 RCR: Chitin synthesis 25.9 54 0.0012 30.3 2.5 19 12-30 1-19 (130)
479 cd05281 TDH Threonine dehydrog 25.9 2.4E+02 0.0053 29.5 7.8 94 215-318 163-263 (341)
480 COG3414 SgaB Phosphotransferas 25.0 1.7E+02 0.0036 25.8 5.3 54 219-287 4-57 (93)
481 PF01555 N6_N4_Mtase: DNA meth 24.5 1.2E+02 0.0027 29.3 5.0 38 215-257 191-230 (231)
482 PLN02178 cinnamyl-alcohol dehy 24.5 1.2E+02 0.0026 32.9 5.3 91 216-317 179-273 (375)
483 PRK11933 yebU rRNA (cytosine-C 24.3 1.1E+02 0.0023 34.9 4.9 96 462-561 116-241 (470)
484 cd08300 alcohol_DH_class_III c 24.3 2.1E+02 0.0045 30.7 7.0 94 215-317 186-288 (368)
485 TIGR00692 tdh L-threonine 3-de 24.1 3.3E+02 0.0072 28.5 8.5 93 216-318 162-262 (340)
486 PLN02476 O-methyltransferase 24.1 1.4E+02 0.0031 31.5 5.5 100 455-561 114-227 (278)
487 cd08231 MDR_TM0436_like Hypoth 23.8 3.2E+02 0.007 28.8 8.4 92 215-318 177-281 (361)
488 PF14258 DUF4350: Domain of un 23.7 2.2E+02 0.0047 22.9 5.5 19 298-316 51-69 (70)
489 PF05219 DREV: DREV methyltran 23.6 56 0.0012 34.2 2.4 91 459-561 94-187 (265)
490 PRK15128 23S rRNA m(5)C1962 me 23.5 52 0.0011 36.5 2.2 120 461-582 222-365 (396)
491 COG4976 Predicted methyltransf 23.3 27 0.00059 36.1 -0.0 101 454-561 120-224 (287)
492 cd08277 liver_alcohol_DH_like 23.2 2.3E+02 0.0049 30.3 7.1 94 215-317 184-286 (365)
493 PRK13699 putative methylase; P 23.2 2.1E+02 0.0045 29.1 6.4 33 215-247 163-197 (227)
494 TIGR02818 adh_III_F_hyde S-(hy 22.9 2.2E+02 0.0048 30.5 7.0 94 215-317 185-287 (368)
495 PF14740 DUF4471: Domain of un 22.7 71 0.0015 34.0 2.9 43 539-581 230-284 (289)
496 COG0373 HemA Glutamyl-tRNA red 22.6 1.8E+02 0.0038 32.6 6.1 75 215-294 177-253 (414)
497 COG1568 Predicted methyltransf 22.2 3.6E+02 0.0079 28.9 7.8 120 215-345 152-283 (354)
498 PRK11524 putative methyltransf 22.2 2E+02 0.0044 30.0 6.3 40 215-259 208-249 (284)
499 COG0686 Ald Alanine dehydrogen 22.1 1.3E+02 0.0028 32.6 4.6 94 215-314 167-265 (371)
500 cd08263 Zn_ADH10 Alcohol dehyd 22.0 2.1E+02 0.0045 30.5 6.5 92 216-317 188-287 (367)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=7.7e-164 Score=1311.44 Aligned_cols=502 Identities=55% Similarity=1.032 Sum_probs=478.3
Q ss_pred CcccCCChhHHhhhhcCCCcccccccccCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccCCCCCcccccccccccc
Q 007165 93 ELIPCLDRNLIYQLKLKPNLSLMEHYERHCPPPERRYNCLVPPPKGYKIPVRWPASRDEVWKANIPHTHLAEEKSDQHWM 172 (615)
Q Consensus 93 ~~~pc~d~~~~~~~~~~~~~~~~~~~er~Cp~~~~~~~Clvp~P~~Y~~P~~WP~s~d~~W~~nv~~~~L~~~k~~q~Wv 172 (615)
|||||+|+.++.+. +.++++|+|||||||+.+++++||||+|++|+.||+||+|||++|++|++|++|+++|+.|||+
T Consensus 1 dy~PC~D~~~~~~~--~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv 78 (506)
T PF03141_consen 1 DYIPCLDNSRAIKF--LLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWV 78 (506)
T ss_pred CCcCCCCHHHHHhh--ccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccce
Confidence 79999999986443 3589999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHH
Q 007165 173 VVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQ 252 (615)
Q Consensus 173 ~~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~ 252 (615)
+.+|+.|.|||||++|.+|+.+|++.+.++++.. ..++..+++||||||+|+|+++|++++|+++++++.|.++++
T Consensus 79 ~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~----~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q 154 (506)
T PF03141_consen 79 RVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLI----KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ 154 (506)
T ss_pred eecCCEEEeCCCCccccCCHHHHHHHHHHHhhcc----ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh
Confidence 9999999999999999999999999999999853 345778999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC-CChhHHHHH
Q 007165 253 IQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA-HDPENRRIW 331 (615)
Q Consensus 253 i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~-~~~e~~~~w 331 (615)
+|+|.+||+++.+.+...++|||++++||+|||++|.+.|.++.+.+|.|++|+|||||+|+++.|+.+. .+++..++|
T Consensus 155 vqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~ 234 (506)
T PF03141_consen 155 VQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEW 234 (506)
T ss_pred hhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHH
Confidence 9999999999999988899999999999999999999999999999999999999999999999999984 455667899
Q ss_pred HHHHHHHhhcceEEEEeeCceEEEeccCCcccccccCCCCCCCCCCCCCCCCccccccccccccccccccccccCCCCCC
Q 007165 332 NAMYDLLKSMCWKIVSKKDQTVIWAKPISNSCYLKRVPGSRPPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVP 411 (615)
Q Consensus 332 ~~l~~La~~l~W~l~~~~~~~aiwqKP~~~~c~~~r~~~~~P~lC~~~~~pd~~wy~~l~~Ci~~~~~~~~~~~~~~~~~ 411 (615)
++|++++++|||++++++++++|||||.+++||.+|+....||+|+++++||++||++|++|||++|+..+..+++++++
T Consensus 235 ~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~ 314 (506)
T PF03141_consen 235 NAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPK 314 (506)
T ss_pred HHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCC
Confidence 99999999999999999999999999999999999998899999999999999999999999999999876667899999
Q ss_pred CCCCcCCCCCCccc---cCCChhhhhhhHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEec
Q 007165 412 WPARLTAPPPRLEE---VGVTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVA 488 (615)
Q Consensus 412 wp~rl~~~p~~~~~---~g~~~~~~~~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvv 488 (615)
||+||+++|+||++ .|+++|+|++|+++|+++|++||++++..+++++|||||||||+||||||||+++||||||||
T Consensus 315 WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVV 394 (506)
T PF03141_consen 315 WPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVV 394 (506)
T ss_pred ChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEec
Confidence 99999999999998 799999999999999999999999998789999999999999999999999999999999999
Q ss_pred cCCCCCchhHHhhcccccccccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHH
Q 007165 489 PVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIIN 568 (615)
Q Consensus 489 p~~~~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~ 568 (615)
|+.++|||+|||||||||+||||||+|||||||||||||++||| .+++||+|+||||||||||||||+|||||++++|+
T Consensus 395 P~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs-~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~ 473 (506)
T PF03141_consen 395 PVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS-LYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLE 473 (506)
T ss_pred ccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh-hhcccccHHHHHHHhHhhcCCCceEEEeccHHHHH
Confidence 99999999999999999999999999999999999999999999 56678999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceeeccccccCcCCCCCceEEEEEe
Q 007165 569 YIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 569 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k 605 (615)
+|++|+++|||+++ ++|+|+++ .++||||||||
T Consensus 474 ~v~~i~~~lrW~~~--~~d~e~g~--~~~EkiL~~~K 506 (506)
T PF03141_consen 474 KVKKIAKSLRWEVR--IHDTEDGP--DGPEKILICQK 506 (506)
T ss_pred HHHHHHHhCcceEE--EEecCCCC--CCCceEEEEEC
Confidence 99999999999994 67888877 56899999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.70 E-value=2.2e-17 Score=179.49 Aligned_cols=152 Identities=22% Similarity=0.397 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHhhhccc----cCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc---cccccc
Q 007165 439 IWQVRVVDYWKQMKTVA----QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL---IGTVHD 510 (615)
Q Consensus 439 ~W~~~v~~y~~~l~~~~----~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl---iG~~hd 510 (615)
.++.-+++|-..|...+ ..+.||-++|..+|.|+|||.|.++.|-+|...|.+. ++...++.|||+ ||++-.
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 34445566654444333 5599999999999999999999999999999999976 489999999996 677655
Q ss_pred ccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE----------cChhHHHHHHHHHhhcCcc
Q 007165 511 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR----------DKSSIINYIRKFITALKWD 580 (615)
Q Consensus 511 wce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir----------d~~~~~~~~~~~~~~~~w~ 580 (615)
---||+. |+|||+|++++......+ -..+|+|+||||||||++|+. |..+..+++++++++|+|+
T Consensus 173 ~rLPfp~--~~fDmvHcsrc~i~W~~~---~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~ 247 (506)
T PF03141_consen 173 QRLPFPS--NAFDMVHCSRCLIPWHPN---DGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWK 247 (506)
T ss_pred ccccCCc--cchhhhhcccccccchhc---ccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5666665 999999999999976655 256999999999999999986 3467899999999999999
Q ss_pred ceeeccccccCcCCCCCceEEEEEecc
Q 007165 581 GWLSEVEPRIDALSSSEERVLIAKKKL 607 (615)
Q Consensus 581 ~~~~~~~~~~~~~~~~~e~~l~~~k~~ 607 (615)
.- ..+..+-|.||+.
T Consensus 248 ~v------------a~~~~~aIwqKp~ 262 (506)
T PF03141_consen 248 KV------------AEKGDTAIWQKPT 262 (506)
T ss_pred Hh------------eeeCCEEEEeccC
Confidence 71 1234599999974
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=1.9e-15 Score=153.13 Aligned_cols=101 Identities=25% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC-----CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI-----PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~-----~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||||.++..+++..- ...+.+.|+++.|++.|+++.. .+.|.++|++.|||+|++||+|.+++ .
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f-g 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF-G 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee-h
Confidence 568899999999999999986511 2233344555555566655532 28899999999999999999999999 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++++|.+++|+|+.|||||||.+++..
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEE
Confidence 9999999999999999999999998866
No 4
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.58 E-value=3.7e-15 Score=126.93 Aligned_cols=93 Identities=29% Similarity=0.488 Sum_probs=77.4
Q ss_pred EEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccccccchH
Q 007165 220 LDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDG 297 (615)
Q Consensus 220 LDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~ 297 (615)
||+|||+|.++..|++. .+.++.+.|+++.+++.++++.. ...+...|...+|+++++||+|++.. +++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~-~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS-VLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES-HGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc-ceeeccCHH
Confidence 89999999999999976 45566666888888888887754 34589999999999999999999988 699889999
Q ss_pred HHHHHHHhccCCCeEEEE
Q 007165 298 ILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 298 ~~L~ei~RvLkPGG~Lvi 315 (615)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 5
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.57 E-value=1.7e-14 Score=160.24 Aligned_cols=97 Identities=19% Similarity=0.285 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCC--CCCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTK--RLPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~--~Lpfpd~sFDlV~~s~~ 288 (615)
..+|||||||+|.++..|++. .|+++|+++. +++.+++. ..++.+.++|+. .+++++++||+|+|..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~-----~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~- 111 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIES-----VIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNW- 111 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH-----HHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhh-
Confidence 468999999999999999864 5666655554 44444332 235678888874 5778889999999988
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|+++. ..++.++.|+|||||++++.+.
T Consensus 112 ~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 112 LLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 58888764 5799999999999999999763
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.56 E-value=5.3e-15 Score=150.10 Aligned_cols=102 Identities=24% Similarity=0.381 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||+|||||.++..++++ .|+++|+++.++..+..+.......++.+.++|++.+|+++++||+|+|++ +
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f-g 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF-G 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh-h
Confidence 4568999999999999988754 455665555555444322222212378999999999999999999999999 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++.++|..+.++|+.|+|||||++++.+
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEee
Confidence 9999999999999999999999999866
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.55 E-value=1.8e-14 Score=141.71 Aligned_cols=202 Identities=20% Similarity=0.235 Sum_probs=150.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
...++|.|+|||+|..+..|+.+- .+..+++.|.|.+|++.|+++.+++.|..+|+..+. ++..+|+++++. ++||+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNA-vlqWl 105 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANA-VLQWL 105 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhh-hhhhc
Confidence 345889999999999999998762 344566778899999999999999999999998886 568899999665 89999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeCceEEEeccCCc-ccccccCCCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWAKPISN-SCYLKRVPGSR 372 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~~~aiwqKP~~~-~c~~~r~~~~~ 372 (615)
+|-..+|..+...|.|||.|.+..|+++.... ...|.+.++...|......... .++|+.. +.|-.. -.
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~deps-----H~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~l---La 175 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNLDEPS-----HRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYEL---LA 175 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCccCchh-----HHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHH---hC
Confidence 99999999999999999999999999864433 4567788887777655444322 3566554 233211 12
Q ss_pred CCCCCCCCCCCccccccccccccccccccccccCCCCCCCCCCcCCCCCCccccCCChhhhhhhHhhHHHHHHHHHHhhh
Q 007165 373 PPLCSSDDDPDVTWNVLMKACISPYSAKMHHEKGTGLVPWPARLTAPPPRLEEVGVTTEEFHEDIGIWQVRVVDYWKQMK 452 (615)
Q Consensus 373 P~lC~~~~~pd~~wy~~l~~Ci~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~g~~~~~~~~d~~~W~~~v~~y~~~l~ 452 (615)
|.=|+ .+.+.+.||+.|..-- +-++++ +|+++.||=++| |.+.|+...+.|..+|+
T Consensus 176 ~~~~r-vDiW~T~Y~h~l~~a~---aIvdWv-kgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 176 PLACR-VDIWHTTYYHQLPGAD---AIVDWV-KGTGLRPYLDRL-------------------DEEERQRFLDRYLALLA 231 (257)
T ss_pred cccce-eeeeeeeccccCCCcc---chhhhe-eccccceecccc-------------------CHHHHHHHHHHHHHHHH
Confidence 33344 6889999998876432 122343 477788777776 35778888888987765
No 8
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.48 E-value=1.4e-13 Score=140.28 Aligned_cols=102 Identities=23% Similarity=0.403 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...+|||+|||+|.++..+... +..+.+.|+++.+++.|+++.....+.++|.+.+|+++++||+|+++. +++|.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~-~l~~~~ 117 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNL-AVQWCG 117 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECc-hhhhcC
Confidence 3568999999999999888754 234444566777778888776556788899999999999999999887 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.|+|+|||.++++++..
T Consensus 118 d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 118 NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 99999999999999999999998654
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.47 E-value=1.5e-13 Score=141.58 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc--------CCCcEEEEecCCCCCCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER--------GIPSTLGVLGTKRLPYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er--------g~~~~~~v~d~~~Lpfpd~sFD 281 (615)
+..+|||+|||+|.++..+++. .|+|+|+++ .|++.|+++ ..++.+.++|++.+|+++++||
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~-----~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSS-----EQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEe
Confidence 3468999999999998888753 456665555 454554433 2357889999999999999999
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+|++++ ++|+++++..+++|+.|+|||||+|++.+..
T Consensus 148 ~V~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 148 AITMGY-GLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEEec-ccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999988 6999999999999999999999999998754
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.45 E-value=7.9e-14 Score=139.92 Aligned_cols=104 Identities=20% Similarity=0.354 Sum_probs=87.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
.+.+|||||||.|.++..|+.. .|+|+|++...+..+. ..|.+.++.+.+....++++....++||+|+|.. +++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE-VlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCME-VLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhh-HHHc
Confidence 3478999999999999999864 6777777666665554 4455667888888888888877678999999999 7999
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+++++.+++.+.+++||||.+++++++-
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999999999999999999999999874
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=5.5e-13 Score=142.55 Aligned_cols=103 Identities=20% Similarity=0.434 Sum_probs=82.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
++.+|||||||+|.++..|++. +|+++|+++.++..+. +.+.+.+. ++.+.++|+..+|+++++||+|++.. +
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-S 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC-c
Confidence 4578999999999999998864 5666666555443333 22333343 57899999999999999999999988 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++|+++...++.++.|+|||||+|++++..
T Consensus 196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 888999999999999999999999998743
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.42 E-value=4.8e-13 Score=125.30 Aligned_cols=111 Identities=32% Similarity=0.537 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL 273 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L 273 (615)
.+.+.+.++.+.. .+..+|||||||+|.++..|.+. +..+.+.|+++.+++. ........+....
T Consensus 8 ~~~~~~~~~~~~~-------~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 8 AYADLLERLLPRL-------KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----RNVVFDNFDAQDP 72 (161)
T ss_dssp CHHHHHHHHHTCT-------TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----TTSEEEEEECHTH
T ss_pred HHHHHHHHHhccc-------CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----hhhhhhhhhhhhh
Confidence 3445555555421 24578999999999999999765 2244455555555544 3344444444455
Q ss_pred CCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 274 PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 274 pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.++++||+|+|+. +++|++++..+|+++.++|||||+++++++..
T Consensus 73 ~~~~~~fD~i~~~~-~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PFPDGSFDLIICND-VLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HCHSSSEEEEEEES-SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hccccchhhHhhHH-HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 56789999999998 69999999999999999999999999999875
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=4.2e-13 Score=137.39 Aligned_cols=101 Identities=21% Similarity=0.367 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..|+... .+..+.+.|+++.+++.|++++ +.+.++|++.++ ++++||+|+|+. ++||++
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNA-ALQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEeh-hhhhCC
Confidence 34789999999999999988641 1234445566677778887764 567888888775 568999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.++|||||++++..+..
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~~ 129 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPGN 129 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 99999999999999999999987654
No 14
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.38 E-value=7.5e-13 Score=140.35 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=81.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+.+|||||||+|.++..|+.. .|+|+|++ +.+++.|+++ + ..+.+.+++++.+++++++||+|+|.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s-----~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~ 205 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAV-----DKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL 205 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh
Confidence 3468999999999999988854 45566554 4455555432 2 25788888988999888999999999
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
. +++|++++..++.++.++|||||.+++++++.
T Consensus 206 ~-vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 206 E-VIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred h-HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 8 79999999999999999999999999998754
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.37 E-value=2.8e-12 Score=132.41 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=88.0
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCc
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPS 263 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~ 263 (615)
.++.+.......+.+.+.+. +..+|||||||+|..+..++.. .+..+.+.|+++.+++.|+++. ..+
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~--------~~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~~~~i 101 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELN--------ENSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSDKNKI 101 (263)
T ss_pred CCCCCchHHHHHHHHhCCCC--------CCCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCcCCce
Confidence 34444444444455555432 3468999999999999888753 1234444556666666666552 357
Q ss_pred EEEEecCCCCCCCCCCceEEEeccccccccc--chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 264 TLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ--RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 264 ~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+...|+...|+++++||+|++..+ ++|.+ +...+++++.++|||||+|+++++.
T Consensus 102 ~~~~~D~~~~~~~~~~FD~V~s~~~-l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 102 EFEANDILKKDFPENTFDMIYSRDA-ILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEECCcccCCCCCCCeEEEEEhhh-HHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 8888998888999999999998774 55554 6788999999999999999998764
No 16
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=4e-12 Score=129.96 Aligned_cols=104 Identities=23% Similarity=0.332 Sum_probs=83.4
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+..+|||||||+|.++..++... .+..+.+.|+++.+++.|+++..++.+..+|+..+. ++++||+|+++. ++||++
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~-~l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANA-SLQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEcc-ChhhCC
Confidence 34789999999999999888541 123344446667777888777667888888887665 457999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+...++.++.++|||||.|+++.|..+
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~~~ 134 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPDNL 134 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 999999999999999999999877653
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.32 E-value=1.1e-11 Score=124.56 Aligned_cols=102 Identities=22% Similarity=0.335 Sum_probs=78.6
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..+++. .|+++|+++.++..+.... ...+. ++.+..+|...+++++++||+|++.. +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~ 123 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKV-KDAGLHNVELVHGNAMELPFDDNSFDYVTIGF-G 123 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HhcCCCceEEEEechhcCCCCCCCccEEEEec-c
Confidence 468999999999999888753 4566665554443333221 12232 57788889888898889999999887 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++.++...++.++.++|+|||++++.++.
T Consensus 124 l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 124 LRNVPDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred cccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 899999999999999999999999987654
No 18
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.31 E-value=6.7e-12 Score=126.42 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=85.3
Q ss_pred CCCeEEEECCCCchHHHHHhc----------CCCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----------HDIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----------~~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sF 280 (615)
...++||++||||-.+..+.+ .+|+.+|+++.++..+. +.|.++++ .+.+..+|++.|||++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgk-qRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGK-QRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHH-HHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 458999999999988887763 36778888887776665 45555554 2678999999999999999
Q ss_pred eEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+..+++ .+...+++.+.|+|++|+|||||+|.+..-
T Consensus 179 D~yTiaf-GIRN~th~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 179 DAYTIAF-GIRNVTHIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred eeEEEec-ceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence 9999998 699999999999999999999999997653
No 19
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.30 E-value=5.9e-12 Score=118.70 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=78.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..|++ .+++|+|+++.++..+. +.+.+.+. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-cccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 47899999999999999983 24555555444443333 22223455 5899999988887 66 8999999887
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++++..++..+++++.++|++||.++++.+.
T Consensus 82 -~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 -VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6899999999999999999999999998865
No 20
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=7e-12 Score=129.82 Aligned_cols=97 Identities=27% Similarity=0.443 Sum_probs=77.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..+++. ...+..+.+.|+++.+++.|+++..++.+.++|+..+|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----
Confidence 367999999999999988753 1112345566777888888888877889999999999999999999997652
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
...+.++.|+|||||+|++..|..
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCCC
Confidence 124689999999999999998765
No 21
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=6.6e-12 Score=128.67 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC-CCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~ 289 (615)
...+|||+|||+|.++..|+.. +|+++|+++.++..+. +.+.+.+. ++.+.++|+..++ +++++||+|+|.. +
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~-~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~-v 121 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAK-QAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA-V 121 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHH-HHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-H
Confidence 3468999999999999999865 4556655554443333 22222343 4678888877664 6678999999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++|+.++..++.++.++|||||++++...+.
T Consensus 122 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 122 LEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 9999999999999999999999999887553
No 22
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.30 E-value=3.2e-11 Score=120.31 Aligned_cols=103 Identities=24% Similarity=0.374 Sum_probs=82.8
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC-CCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
..+|||+|||+|.++..+++.. ....+.+.|+++.+++.++++. .++.+..+|...+++++++||+|++.. ++||..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~-~l~~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNL-ALQWCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhh-hhhhcc
Confidence 3689999999999999888642 1223444466666666666653 256788899989998889999999988 699999
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++..++.++.++|+|||.++++++..
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 99999999999999999999988654
No 23
>PRK05785 hypothetical protein; Provisional
Probab=99.29 E-value=7.2e-12 Score=126.60 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
..+|||||||+|.++..+++.. +..+.+.|+++.|++.|+++. .+.++|++.+|+++++||+|++++ ++|+.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~-~l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSF-ALHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecC-hhhccCC
Confidence 4689999999999999988651 234455566777777777653 356789999999999999999998 6899999
Q ss_pred hHHHHHHHHhccCCCe
Q 007165 296 DGILLLELDRLLRPGG 311 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG 311 (615)
++.+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 9999999999999953
No 24
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.27 E-value=1.1e-11 Score=109.94 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=72.1
Q ss_pred CCeEEEECCCCchHHHHHhc--C--CCccccCChhchhHHHHHHHH-HcCCCcEEEEecC-CCCCCCCCCceEEEecc-c
Q 007165 216 IRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGT-KRLPYPSRSFELAHCSR-C 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~--~V~gvdis~~Dls~a~i~~A~-erg~~~~~~v~d~-~~Lpfpd~sFDlV~~s~-~ 288 (615)
..+|||||||+|.++..+++ . +|+++|+++..+..++..... ....++.+...|+ ...... ..||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 46899999999999999987 2 667776666655544433312 1235788999988 333333 5699999987 3
Q ss_pred ccccc--cchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~--~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..++. ++...+++++.+.|+|||+|++++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22122 445779999999999999999975
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.27 E-value=5.4e-11 Score=120.62 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCCCCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~Lpfpd~sFDl 282 (615)
+..+|||+|||+|.++..+++. +++++|+ ++.+++.|+++ ..++.+..+|...++++ .+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~-----s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDN-----SQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeC-----CHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCE
Confidence 3467999999999998888653 3555555 44555555433 23578889999888875 4899
Q ss_pred EEecccccccccc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 283 AHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 283 V~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
|+++. ++||+++ ...+++++.|+|+|||.|+++++..
T Consensus 126 v~~~~-~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 126 VILNF-TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred Eeeec-chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 99888 6888754 4679999999999999999998643
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.26 E-value=3.9e-11 Score=119.39 Aligned_cols=118 Identities=27% Similarity=0.353 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEe
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVL 268 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~ 268 (615)
..|.+.+.+.+.+ .+..+|||+|||+|.++..++...-....+.+.|+++.+++.++++ +..+.+...
T Consensus 5 ~~~~~~~~~~~~~--------~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 5 RRYRARTFELLAV--------QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHHHcCC--------CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence 3444455555543 2346899999999999988875310112233334555555555544 345788888
Q ss_pred cCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 269 GTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 269 d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|...+++++++||+|++.. ++++..++..++.++.++|+|||++++..+.
T Consensus 77 d~~~~~~~~~~~D~v~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDR-VLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccccCCCCCCCceEEEEec-hhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 8888888889999999988 5999999999999999999999999998764
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.25 E-value=1.5e-11 Score=130.62 Aligned_cols=100 Identities=23% Similarity=0.250 Sum_probs=78.7
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHH-HcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~-erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+++|||||||+|.++..+++. .|+|+|.++.++......... ....++.+..++++.+|+ +++||+|+|.. +++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~-vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMG-VLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECC-hhh
Confidence 478999999999999988764 477887776655332211111 113467888889999998 78999999887 689
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|..++..+|++++++|+|||.|++.+
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999999999999999999999875
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.24 E-value=2.4e-11 Score=119.96 Aligned_cols=98 Identities=19% Similarity=0.342 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++.+|+++ .|+++|+++.++..+. +.+.+.++++.+.+.|....+++ ++||+|+++. ++|++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~~ 107 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTV-VFMFL 107 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEec-ccccC
Confidence 357999999999999999865 5777777665554443 33445566777777787666654 6899999888 57776
Q ss_pred c--chHHHHHHHHhccCCCeEEEEE
Q 007165 294 Q--RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 294 ~--d~~~~L~ei~RvLkPGG~Lvis 316 (615)
+ +...++.++.++|+|||++++.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4 3467999999999999996654
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=3.4e-11 Score=133.94 Aligned_cols=102 Identities=28% Similarity=0.420 Sum_probs=80.2
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+|||||||+|..+..|+... +..+.+.|+++.+++.|+++ ..++.+.++|...+++++++||+|+|.. ++
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~-~l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRD-TI 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECC-cc
Confidence 45789999999999888887541 22334445555555555443 3357888999988899889999999888 58
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+|++++..++.++.|+|||||.|+++++.
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 89999999999999999999999998754
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=2.6e-11 Score=119.83 Aligned_cols=98 Identities=19% Similarity=0.367 Sum_probs=73.1
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++.+|+++ +|+++|+++.++..+.. .+.+.+. ++.+.+.|...++++ ++||+|+|+. ++||
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~-~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTV-VLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCcC-CCcCEEEEec-chhh
Confidence 367999999999999999875 56677666655544432 2333444 367788888777765 6799999988 5777
Q ss_pred cc--chHHHHHHHHhccCCCeEEEEE
Q 007165 293 LQ--RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 293 ~~--d~~~~L~ei~RvLkPGG~Lvis 316 (615)
++ +...++.++.++|||||++++.
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 65 3467999999999999996553
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.24 E-value=5.6e-12 Score=110.75 Aligned_cols=93 Identities=28% Similarity=0.493 Sum_probs=68.8
Q ss_pred EEEECCCCchHHHHHhcCC--CccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 219 VLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~~--V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
|||+|||+|..+..+...- -....+.+.|+++.+++.++++ +.++.+.++|+..+++.+++||+|+|+.++++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999998887431 0113444445566666666554 478999999999999888999999997766888
Q ss_pred ccch--HHHHHHHHhccCCCe
Q 007165 293 LQRD--GILLLELDRLLRPGG 311 (615)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG 311 (615)
+.+. ..+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 7654 579999999999998
No 32
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.22 E-value=1.4e-10 Score=123.76 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=91.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+..+|||||||+|.++..+++.. .+..+.+.|.++.+++.|+++. .++.+..+|.+.+++++++||+|+++. ++++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~-~L~~ 190 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAG-SIEY 190 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcC-hhhh
Confidence 34689999999999888876531 1123334455555666665542 356788899999999999999999887 6899
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCCC---CCCChhHHH------HHHHHHHHHhhcceEEEEe
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPEA---YAHDPENRR------IWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~~---~~~~~e~~~------~w~~l~~La~~l~W~l~~~ 348 (615)
.+++..+++++.|+|||||.+++..+.. +.. ..... .-+++.+++++.+|+.+..
T Consensus 191 ~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~-r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 191 WPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLS-RFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHH-HHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 9999999999999999999999876432 110 00011 1245556677777766543
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.21 E-value=1e-10 Score=119.53 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=72.9
Q ss_pred CCeEEEECCCCchHHHHHhc------CCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLS------HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~------~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
..+|||||||+|..+..++. .+++++|+++.++..+..+.. ..+. ++.+.++|+..+|++ .+|+|+++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~-~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID-AYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH-hcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 46899999999999887764 245666555554444332222 1222 578888898888765 499999887
Q ss_pred cccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++||+++. ..+++++.++|||||.|++++..
T Consensus 134 -~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 134 -TLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred -HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 58887643 56999999999999999998744
No 34
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.20 E-value=3.7e-12 Score=111.11 Aligned_cols=93 Identities=26% Similarity=0.398 Sum_probs=53.8
Q ss_pred EEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-C-CCCCceEEEecccccccc
Q 007165 220 LDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 220 LDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-f-pd~sFDlV~~s~~~l~~~ 293 (615)
||||||+|.++..+.+. +++++|+++.++..+..++.............+..... . ..++||+|+++. ++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~-vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASN-VLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE--TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhh-hHhhh
Confidence 79999999998888654 67788887777744443333322223333333332222 1 226999999998 79999
Q ss_pred cchHHHHHHHHhccCCCeEE
Q 007165 294 QRDGILLLELDRLLRPGGYF 313 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~L 313 (615)
+++..+++.+.++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.20 E-value=5.5e-11 Score=122.74 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=77.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
++.+|||||||+|..+..++.. +|+++|+++.++..+.. .+...+. ++.+..+|.+.+++++++||+|++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~- 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISNC- 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC-
Confidence 4578999999999876655432 46677665554443332 2222333 57788889999999889999999765
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++++.++...++.++.|+|||||+|++++.
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 799999999999999999999999999764
No 36
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.19 E-value=4.7e-11 Score=117.04 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=79.8
Q ss_pred CeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCC-CCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP-YPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lp-fpd~sFDlV~~s~~~l~ 291 (615)
..||+||||||..-.++.. ..|+++|.++.+-+-+...++.++..++. |++++.+++| ++++++|.|+|.. ++-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl-vLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL-VLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE-EEe
Confidence 4589999999977666652 25667766665554444444444556666 8999999999 8999999999998 487
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
-..++.+.|+|+.|+|||||.+++....
T Consensus 157 Sve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 8899999999999999999999997643
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.16 E-value=6.9e-11 Score=125.02 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=75.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+++|||||||+|.++..++.. .|+|+|.++.++... +.++.. ...+.+...+.+.+|.. .+||+|+|+. +
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g-v 197 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMG-V 197 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcc-h
Confidence 478999999999998887754 467777666554322 122221 23466777788888864 5899999988 6
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++|.+++..+|.+++|+|||||.|++.+.
T Consensus 198 L~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 198 LYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 88999999999999999999999998753
No 38
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.15 E-value=2.9e-10 Score=111.85 Aligned_cols=116 Identities=20% Similarity=0.175 Sum_probs=85.5
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+.+|||+|||+|.++..++. ..|+++|.++.++..+. +.+++.+. ++.+..+|...++. +++||+|+|..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~--- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA--- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc---
Confidence 47899999999998887763 36777776666555444 33334454 47888899888776 67999999754
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
..+...++.++.++|||||+|++..+... -..+..+++..+|.+..
T Consensus 121 --~~~~~~~l~~~~~~LkpGG~lv~~~~~~~---------~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 121 --VASLSDLVELCLPLLKPGGRFLALKGRDP---------EEEIAELPKALGGKVEE 166 (187)
T ss_pred --ccCHHHHHHHHHHhcCCCeEEEEEeCCCh---------HHHHHHHHHhcCceEee
Confidence 24567899999999999999999875431 23466777878887654
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.15 E-value=1.2e-10 Score=120.53 Aligned_cols=132 Identities=15% Similarity=0.247 Sum_probs=86.8
Q ss_pred CCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCch----HHHHHhcCC----CccccCChhchhHHHHHHH
Q 007165 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVAS----FGAYLLSHD----IIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 185 g~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~----~a~~L~~~~----V~gvdis~~Dls~a~i~~A 256 (615)
.+.|.+...++......+++..... ....+..+|||+|||+|. ++..|++.. .....+.+.|+++.+++.|
T Consensus 70 ~T~FfR~~~~~~~l~~~vlp~l~~~-~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 70 ETRFFRESKHFEALEEKVLPLLIAS-RRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred CCcccCCcHHHHHHHHHHhHHHHHh-cCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 3455555555554433333311101 112234789999999995 444444321 1134556667777777777
Q ss_pred HHcC--------------------------------CCcEEEEecCCCCCCCCCCceEEEecccccccccch--HHHHHH
Q 007165 257 LERG--------------------------------IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLE 302 (615)
Q Consensus 257 ~erg--------------------------------~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~e 302 (615)
++.- ..+.|.+.|+...++++++||+|+|.+ +++|++++ ..++.+
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn-vl~yf~~~~~~~~l~~ 227 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN-VLIYFDEPTQRKLLNR 227 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech-hHHhCCHHHHHHHHHH
Confidence 6531 146788899888887789999999988 57787644 579999
Q ss_pred HHhccCCCeEEEEEcC
Q 007165 303 LDRLLRPGGYFVYSSP 318 (615)
Q Consensus 303 i~RvLkPGG~Lvis~P 318 (615)
+.++|+|||+|++...
T Consensus 228 l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 228 FAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHhCCCeEEEEECc
Confidence 9999999999999653
No 40
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.14 E-value=1.2e-10 Score=121.61 Aligned_cols=98 Identities=18% Similarity=0.368 Sum_probs=74.1
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
.+|||+|||+|.++.+|+.. +|+++|+++..+..+. +.+.+.++++.+...|....++ +++||+|++.. +++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~-vl~~l~ 198 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLNIRTGLYDINSASI-QEEYDFILSTV-VLMFLN 198 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCceEEEEechhcccc-cCCccEEEEcc-hhhhCC
Confidence 47999999999999999864 5666666655544333 3445557778888888776655 58899999887 588775
Q ss_pred --chHHHHHHHHhccCCCeEEEEEc
Q 007165 295 --RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 --d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...+++++.++|+|||++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 44679999999999999977643
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.14 E-value=9.5e-11 Score=121.80 Aligned_cols=98 Identities=22% Similarity=0.417 Sum_probs=67.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHH----HcCCC--cEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGIP--STLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~----erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.++.+|||||||.|.++.+++++ .++.+.+..+|+.|.+.++ +.|+. +.+...|..+++. +||.|++..
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~ 135 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIE 135 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEES
T ss_pred CCCCEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEe
Confidence 34578999999999999999876 1333344455555555554 44653 6788888777663 899999998
Q ss_pred cccccc--cchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWL--QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~--~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.++|+ .+...+++++.++|||||.+++..
T Consensus 136 -~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 136 -MFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -EGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred -chhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 58887 455789999999999999999865
No 42
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.13 E-value=4e-11 Score=121.52 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=72.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---C----C----cEEEEecCCCCCCCCCCceEEE
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---I----P----STLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~----~----~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
+++|||+|||+|.++..|+.. |.++++.|++..+++.|++.- + + +.+...+++.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 367999999999999999863 333444455555666665541 1 1 233444444443 4599999
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+. +++|+.|+..++..+.++|||||.+++++-+
T Consensus 164 cse-vleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 164 CSE-VLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eHH-HHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 999 7999999999999999999999999998854
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.12 E-value=1.5e-10 Score=115.65 Aligned_cols=95 Identities=23% Similarity=0.383 Sum_probs=73.5
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
++|||||||+|.++..+++. .++++|+ ++.+++.++++ +. .+.+...|....|++ ++||+|++.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~-----s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTI-----SPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehH
Confidence 36999999999999888753 3455554 55555555443 33 467788887666665 589999988
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. +++|+.+...+++++.++|||||+++++++
T Consensus 75 ~-~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 75 E-VIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred H-HHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 8 588899999999999999999999999875
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.09 E-value=3.4e-10 Score=110.88 Aligned_cols=97 Identities=24% Similarity=0.348 Sum_probs=78.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCC-CC-CCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-PYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~-~L-pfpd~sFDlV~~s~~~l~~~ 293 (615)
+.+|||+|||.|.+..+|.+. -.++..+.+++++.+..+.++|+++ .++|++ .| .|++++||.|+++. +++.+
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~V--iq~Dld~gL~~f~d~sFD~VIlsq-tLQ~~ 88 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSV--IQGDLDEGLADFPDQSFDYVILSQ-TLQAV 88 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCE--EECCHHHhHhhCCCCCccEEehHh-HHHhH
Confidence 478999999999999999864 1334445577788888888999874 455643 34 38999999999999 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.+++.+|.|+.|+ |...+++.||.
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecCh
Confidence 9999999999777 66888888886
No 45
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.09 E-value=3.2e-10 Score=112.63 Aligned_cols=102 Identities=19% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC-CCcEEEEecC-CCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG-IPSTLGVLGT-KRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg-~~~~~~v~d~-~~Lp--fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..++.. +++++|+++.++..+..+. ...+ .++.+.++|+ +.++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~-~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKI-EEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHH-HHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 468999999999999888753 4666666655554443222 2223 3578888888 7776 7788999999876
Q ss_pred cccccccc--------hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQR--------DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d--------~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ .+|... ...+++++.++|||||.|+++.+.
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 3 444321 356899999999999999998754
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=4e-10 Score=116.71 Aligned_cols=126 Identities=14% Similarity=0.290 Sum_probs=87.7
Q ss_pred ecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHH
Q 007165 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 180 ~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A 256 (615)
.|+............-.+.+.+.+.+. ++.+|||||||-|.++.++++. +|+|+++|..+...+. +.+
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~--------~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~ 115 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLK--------PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRI 115 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCC--------CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHH
Confidence 444444444444444455555555543 4588999999999999999865 4556655555444333 333
Q ss_pred HHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 257 LERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 257 ~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|.+ +++...|...+. +.||-|++.. .++|+.. ...+|..+.++|+|||.+++.+-
T Consensus 116 ~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvg-mfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 116 AARGLEDNVEVRLQDYRDFE---EPFDRIVSVG-MFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred HHcCCCcccEEEeccccccc---cccceeeehh-hHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 445665 666666665554 5599999988 5898866 67899999999999999998763
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.09 E-value=3.1e-10 Score=111.85 Aligned_cols=99 Identities=23% Similarity=0.467 Sum_probs=77.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
+.++||+|||.|..+.+|+++ .|+++|.++..+... .+.|.+.++++...+.|.....++ +.||+|++.. +++|+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l-~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~-v~~fL 107 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKL-QRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTV-VFMFL 107 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHH-HHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEES-SGGGS
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHH-HHHHhhcCceeEEEEecchhcccc-CCcCEEEEEE-EeccC
Confidence 468999999999999999976 678888887766554 367778899999999998887775 7899999766 57777
Q ss_pred cch--HHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.. ..++..+...++|||++++.+
T Consensus 108 ~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 108 QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 568999999999999998843
No 48
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.06 E-value=8.9e-10 Score=109.80 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ- 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~- 294 (615)
..+|||||||+|.++..|... ..+.++.+.|+++.+++.|+++...+.+.++|+.. |+++++||+|++.. +++|++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~-vL~hl~p 120 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKG-VLIHINP 120 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECC-hhhhCCH
Confidence 467999999999999988754 12345666678888888888766667788888777 88899999999888 577764
Q ss_pred -chHHHHHHHHhccCCCeEEEEEc
Q 007165 295 -RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 -d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...+++++.|++ +++++++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEE
Confidence 2367899999998 56777765
No 49
>PRK06922 hypothetical protein; Provisional
Probab=99.04 E-value=4.2e-10 Score=127.56 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCC--CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP--YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lp--fpd~sFDlV~~ 285 (615)
+.+|||||||+|.++..++.. .++|+|+ ++.+++.|+++ +.++.+.++|...+| +++++||+|++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDI-----S~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDI-----SENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEEC-----CHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 468999999999988887643 4555555 44555544432 456677888888887 78899999998
Q ss_pred cccccccc-------------cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRCRIDWL-------------QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~~l~~~-------------~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+. ++|+. .+...+|+++.|+|||||.+++.+..
T Consensus 494 n~-vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 494 SS-ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred ch-HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 87 46653 24467999999999999999998753
No 50
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.04 E-value=1.6e-09 Score=107.21 Aligned_cols=104 Identities=20% Similarity=0.276 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||+|||+|.++..++........+.+.|+++.+++.++++. .++.+..+|+..+++++++||+|+++. +++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~-~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAF-GLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEee-eeC
Confidence 3478999999999999888754211123444455566666665542 357788888888888888999999887 688
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+..++..+++++.++|+|||++++....
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999999999999999999999987643
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.00 E-value=1.3e-09 Score=118.46 Aligned_cols=98 Identities=22% Similarity=0.397 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc--CCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER--GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er--g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
++.+|||||||+|.++..+++. .+..+.+.|+++.+++.|+++ +..+.+...|...+ +++||+|++.. .++|
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~-~~eh 240 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVG-MFEH 240 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeC-chhh
Confidence 3468999999999999988864 133455556667777777665 34566777776555 47899999887 5788
Q ss_pred ccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.+ ...+++++.++|||||++++.+.
T Consensus 241 vg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 241 VGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 743 46799999999999999999764
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.00 E-value=1.5e-09 Score=106.62 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
...+++||+|||.|.++..|+.+ +++++ |+++..++.|++|- ..+.+.+++.... .|+++||+|+++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~Llav-----Dis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SE- 114 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAV-----DISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSE- 114 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEE-----ES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEE-----eCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEeh-
Confidence 45678999999999999999976 45555 55666677777763 3588888887654 4779999999999
Q ss_pred ccccccc---hHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQR---DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d---~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++|+.+ ...++..+...|+|||.|++.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 6888865 35689999999999999999763
No 53
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.00 E-value=1.3e-10 Score=115.64 Aligned_cols=100 Identities=32% Similarity=0.448 Sum_probs=82.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-CC-CCCCCceEEEecccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP-YPSRSFELAHCSRCRID 291 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-Lp-fpd~sFDlV~~s~~~l~ 291 (615)
+.-+++||+|||||.++..|... +-++.+.|+|++|++.|.++|+--.+.++++.. ++ ..+..||+|++.. ++.
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD-Vl~ 199 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD-VLP 199 (287)
T ss_pred CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh-HHH
Confidence 34689999999999999988764 345556688899999999998765555666442 22 4568899999888 799
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.+.+.++.-+...|+|||.|.||+
T Consensus 200 YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 200 YLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred hhcchhhHHHHHHHhcCCCceEEEEe
Confidence 99999999999999999999999987
No 54
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.98 E-value=1.8e-09 Score=108.01 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=68.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDl 282 (615)
+.+|||||||+|.++..+++. .|+++|+++. ....++.+.++|+...+ +.+++||+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~ 120 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQV 120 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCE
Confidence 468999999999999988753 5777777651 11134778888987753 66789999
Q ss_pred EEecccccccccch-----------HHHHHHHHhccCCCeEEEEEcC
Q 007165 283 AHCSRCRIDWLQRD-----------GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 283 V~~s~~~l~~~~d~-----------~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+|.. +.++..++ ..+|.++.++|+|||.|++...
T Consensus 121 V~S~~-~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 121 VMSDM-APNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred EecCC-CCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99865 46554322 3589999999999999999764
No 55
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.98 E-value=2.1e-09 Score=107.54 Aligned_cols=102 Identities=22% Similarity=0.264 Sum_probs=76.4
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..++........+.+.|+++.+++.++++ ..++.+...|...++++.++||+|+++. +
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~-~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF-G 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec-c
Confidence 46899999999999888865310012333334444555555443 2356788888888888788999999888 5
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++..++..++.++.++|+|||++++.+.
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 88999999999999999999999998764
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.97 E-value=4.5e-09 Score=102.89 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=70.1
Q ss_pred CCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+.+|||+|||+|.++..++. .+|+++|.++.++..+. +.+++.+. ++.+..+|+..++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 46899999999998887763 25778877766554333 23334454 4788888988775 357999998643 3
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+...++..+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3455688899999999999998764
No 57
>PRK06202 hypothetical protein; Provisional
Probab=98.97 E-value=2.3e-09 Score=108.26 Aligned_cols=100 Identities=18% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+..+|||+|||+|.++..|+.. .-....+.+.|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+. +
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~-~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH-F 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC-e
Confidence 4468999999999988887631 111234555566777777776652 345666777777777788999999998 6
Q ss_pred cccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+||++++ ..+++++.|+++ |.+++.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 9999875 469999999998 5555554
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.96 E-value=3.4e-09 Score=104.53 Aligned_cols=101 Identities=17% Similarity=0.276 Sum_probs=71.4
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC---CCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP---YPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp---fpd~sFDlV~~s~~ 288 (615)
.+|||||||+|.++..++.. +++++|++...+..+.. .+.+.++ ++.+..+|+..++ +++++||.|++.+
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~-~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~- 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN-KANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF- 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC-
Confidence 57999999999999988854 56666665554443332 2223333 5788888876553 5667999999766
Q ss_pred ccccccch--------HHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+|.... ..++.++.++|||||.|++.+..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 35554322 46899999999999999997743
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.94 E-value=8.6e-09 Score=92.36 Aligned_cols=97 Identities=18% Similarity=0.120 Sum_probs=66.9
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+... +...+. ++.+...|... ++....+||+|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN-ARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH-HHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 358999999999999998754 466666655544443322 222233 46676676554 3333468999998663
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+ ....+++++.++|+|||+|+++.
T Consensus 98 ~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 32 23579999999999999999864
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.91 E-value=5.3e-09 Score=105.30 Aligned_cols=99 Identities=20% Similarity=0.396 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CCCcEEEEecCCCCC-CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GIPSTLGVLGTKRLP-YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~d~~~Lp-fpd~sFDlV~~s~ 287 (615)
+..+|||||||+|.++..+... .++++|+ ++.+++.++++ +..+.+...+....+ ..+++||+|+++.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~-----s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDA-----SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 3467999999999999888764 3455544 44444444432 455667777766554 3457999999988
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++.+++..++.++.++|+|||.++++.+.
T Consensus 123 -~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 123 -MLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred -HhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 5888999999999999999999999998764
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.90 E-value=1.5e-08 Score=106.15 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=75.4
Q ss_pred CCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC
Q 007165 185 GTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI 261 (615)
Q Consensus 185 g~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~ 261 (615)
+..|..+.........+++.... .+..+|||+|||+|.++..++.. +|+++|+++..+..+.. .+...++
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~------~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~ 207 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLD------LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQV 207 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhc------CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCC
Confidence 34455554444444444443111 12478999999999988777643 56777776665554442 2223344
Q ss_pred C--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 262 P--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 262 ~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. +.+...+ ..+..+++||+|+++. ..+ ....++.++.++|||||+|+++...
T Consensus 208 ~~~~~~~~~~--~~~~~~~~fDlVvan~-~~~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 208 SDRLQVKLIY--LEQPIEGKADVIVANI-LAE---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CcceEEEecc--cccccCCCceEEEEec-CHH---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 3 2333333 2334467999999765 222 3356899999999999999998753
No 62
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.89 E-value=1.5e-08 Score=101.31 Aligned_cols=93 Identities=22% Similarity=0.310 Sum_probs=68.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..++.. .++|+|+ ++.+++.|+++ +. ++.+.+.|...++ ++||+|++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~-----s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~ 126 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDI-----SEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCM 126 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence 3578999999999999999865 4555555 45555554443 32 5788888887765 789999998
Q ss_pred cccccccc--chHHHHHHHHhccCCCeEEEEE
Q 007165 287 RCRIDWLQ--RDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 287 ~~~l~~~~--d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.. ++|.+ +...++.++.+++++|+++.++
T Consensus 127 ~~-l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 127 DV-LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hH-HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 84 55553 3467899999999988777664
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.89 E-value=6.8e-09 Score=104.21 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=69.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHH------------HHcCCCcEEEEecCCCCCCC-CCCc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFA------------LERGIPSTLGVLGTKRLPYP-SRSF 280 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A------------~erg~~~~~~v~d~~~Lpfp-d~sF 280 (615)
..+|||+|||.|..+.+|+++ .|+|+|+++..+..++.+.. ..++..+.+.++|...++.. .++|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 368999999999999999976 66677666554442211100 00234577889998877643 4679
Q ss_pred eEEEecccccccccch--HHHHHHHHhccCCCeEEEEE
Q 007165 281 ELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis 316 (615)
|.|+-..+ +++++.. ..++..+.++|||||++++.
T Consensus 115 D~i~D~~~-~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 115 DAVYDRAA-LIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CEEEechh-hccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 99997764 5555433 45899999999999976654
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.89 E-value=4.8e-09 Score=104.62 Aligned_cols=98 Identities=21% Similarity=0.390 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHH----cCC-CcEEEEecCCCCCCC-CCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE----RGI-PSTLGVLGTKRLPYP-SRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~e----rg~-~~~~~v~d~~~Lpfp-d~sFDlV~~s~ 287 (615)
..+|||+|||+|.++..++.. .++++|+ ++.+++.+++ .+. ++.+...+...++.. .++||+|++..
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~-----s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDA-----SEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeC-----CHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 468999999999999888754 3455554 4444444433 244 477777777666644 37899999988
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+++..++..++.++.++|+|||.++++.++
T Consensus 121 -~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 121 -VLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred -HHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 5899999999999999999999999998754
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.88 E-value=1.5e-08 Score=98.35 Aligned_cols=119 Identities=16% Similarity=0.140 Sum_probs=77.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+.... ...+..+.+..+|....+ .++||+|+++.. +++.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p-~~~~~ 96 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNVGLDVVMTDLFKGV--RGKFDVILFNPP-YLPLE 96 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCceEEEEccccccc--CCcccEEEECCC-CCCCc
Confidence 57999999999999998865 3566665555444333222 233556777777765543 458999998763 43332
Q ss_pred c---------------------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 295 R---------------------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 295 d---------------------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
+ ...++.++.++|+|||.+++..+... . -..+..++++..|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--~------~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN--G------EPDTFDKLDERGFRYEI 162 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC--C------hHHHHHHHHhCCCeEEE
Confidence 1 24579999999999999999875431 1 12344555555665443
No 66
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.88 E-value=9.5e-09 Score=101.05 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=71.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-C-CCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-PYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-L-pfpd~sFDlV~~s~~~l~~~ 293 (615)
..+|||+|||+|.++..+++.. +.++.+.|+++.+++.+++++ +.+.++|+.. + ++++++||+|+|+. ++||+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~~-~l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARG--VNVIQGDLDEGLEAFPDKSFDYVILSQ-TLQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcC--CeEEEEEhhhcccccCCCCcCEEEEhh-HhHcC
Confidence 3579999999999998887541 223344566677777777665 4566777654 4 47788999999988 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+++..+++++.|+++ .++++.|+
T Consensus 89 ~d~~~~l~e~~r~~~---~~ii~~p~ 111 (194)
T TIGR02081 89 RNPEEILDEMLRVGR---HAIVSFPN 111 (194)
T ss_pred cCHHHHHHHHHHhCC---eEEEEcCC
Confidence 999999999988765 45566554
No 67
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.86 E-value=7e-09 Score=111.20 Aligned_cols=127 Identities=14% Similarity=0.224 Sum_probs=82.2
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
.+|||+|||+|.++..++.+ .|+++|+++..+..+... +...++...+...|... ..+++||+|+|+. .+|+
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n-l~~n~l~~~~~~~D~~~--~~~~~fDlIvsNP-PFH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT-LAANGLEGEVFASNVFS--DIKGRFDMIISNP-PFHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEEEccccc--ccCCCccEEEECC-CccC
Confidence 47999999999999988854 466666666555444422 23345666666666543 2357899999887 4665
Q ss_pred c-----cchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeCceEEEe
Q 007165 293 L-----QRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKDQTVIWA 356 (615)
Q Consensus 293 ~-----~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~~~aiwq 356 (615)
. .....++.++.+.|||||.|++........ + ..++.... ..+..++.+...+|+
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y-~------~~l~~~Fg--~~~~la~~~~f~v~~ 333 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPY-P------DLLDETFG--SHEVLAQTGRFKVYR 333 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh-H------HHHHHHcC--CeEEEEeCCCEEEEE
Confidence 2 234679999999999999999987543211 1 11222222 235566666666664
No 68
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.85 E-value=8.3e-09 Score=107.45 Aligned_cols=99 Identities=23% Similarity=0.308 Sum_probs=75.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc-CCCcE--EEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPST--LGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er-g~~~~--~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.+++|||||||.|.++-.++.+ .|+|+|.+.. .-.|-+++++. |.... ..-...+.+|. .++||+|+|..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l--f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG- 190 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL--FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG- 190 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH--HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee-
Confidence 4589999999999999888865 5777776554 33343444433 23322 22246788887 78999999998
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++.|..+|-..|.++...|+|||.+++.+
T Consensus 191 VLYHrr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 191 VLYHRRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred ehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 79999999999999999999999999865
No 69
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.85 E-value=1.8e-08 Score=100.20 Aligned_cols=94 Identities=17% Similarity=0.097 Sum_probs=66.0
Q ss_pred CCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
..+|||||||+|..+..++. ..|+++|+++.....+. +...+.+. .+.+..+|........++||+|++..
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~- 150 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA- 150 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc-
Confidence 46899999999999887764 25677766655544333 22223344 36788888766544567999999887
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++++++ .++.++|+|||+|++..
T Consensus 151 ~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 151 AASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred Ccchhh------HHHHHhcCcCcEEEEEE
Confidence 455443 57889999999999865
No 70
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.83 E-value=6.1e-08 Score=94.71 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=75.0
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.+ +|+++|+++..+..+... +...+. ++.+..+|.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n-~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKEN-RQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 468999999999999888753 566776666554443322 222233 4666666653 2333 68999998763 3
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEE
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l 345 (615)
+ ....++.++.++|+|||++++..... .....+..++++.+++.
T Consensus 108 ~---~~~~~l~~~~~~Lk~gG~lv~~~~~~--------~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 G---NLTAIIDWSLAHLHPGGRLVLTFILL--------ENLHSALAHLEKCGVSE 151 (187)
T ss_pred c---CHHHHHHHHHHhcCCCeEEEEEEecH--------hhHHHHHHHHHHCCCCc
Confidence 3 34568899999999999999865322 12344555666666643
No 71
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.82 E-value=3.2e-09 Score=106.61 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=75.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEE----EEecCCCCCC--CCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTL----GVLGTKRLPY--PSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~----~v~d~~~Lpf--pd~sFDlV~~s~~ 288 (615)
+.++|+|||+|..+..+++. +|+++ |++++|+++|.+....... ...+.+..++ .+++.|+|+|..|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIat-----D~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIAT-----DVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheee-----cCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 57999999999766666665 67776 5667788888765322111 1122222333 4899999999995
Q ss_pred ccccccchHHHHHHHHhccCCCe-EEEEEcCCCCCCChhHHHHHHHHHHHHhhcceE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWK 344 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG-~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~ 344 (615)
+||+ |.+++++++.|+||+.| .+++=. ... +.-.|.+...+..+.+|.
T Consensus 110 -~HWF-dle~fy~~~~rvLRk~Gg~iavW~-----Y~d-d~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 110 -VHWF-DLERFYKEAYRVLRKDGGLIAVWN-----YND-DFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred -HHhh-chHHHHHHHHHHcCCCCCEEEEEE-----ccC-CCcCCHHHHHHHHHHhhc
Confidence 9998 56679999999999877 555422 111 223355556666666653
No 72
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.80 E-value=6.5e-08 Score=102.65 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=61.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
+.+|||||||+|.++..|++. .|+++|+++.++..+..+ +.+. +..+.+.+.|...+ +++||+|+|..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~-~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~ 220 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERR-AKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLD 220 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcccccccccceEEEEcchhhc---CCCcCEEEEcC
Confidence 468999999999999999865 455665555544433321 1221 12456777776544 47899999998
Q ss_pred cccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 CRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ ++|.++. ..++..+.+ +.+||.++...|.
T Consensus 221 v-L~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 221 V-LIHYPQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred E-EEecCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 4 5555543 345666665 4566665544443
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.80 E-value=9.5e-08 Score=97.96 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++...+. ++..+.+||+|+++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~~~------~~~~~~~fD~Vvani~-~- 189 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELNVY------LPQGDLKADVIVANIL-A- 189 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCceEE------EccCCCCcCEEEEcCc-H-
Confidence 3478999999999888877643 36666665554443332 222233321111 1222237999997642 2
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.....++.++.++|||||+++++..... ....+...+++.+|.+..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~--------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEE--------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHh--------hHHHHHHHHHHCCCEEEE
Confidence 2235688999999999999999864321 123445556666676553
No 74
>PRK14967 putative methyltransferase; Provisional
Probab=98.79 E-value=8.7e-08 Score=96.41 Aligned_cols=102 Identities=20% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+. +.+...+.++.+...|... .+++++||+|+++--....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 368999999999999888753 4566666554443333 2223335567777777654 2456799999986311111
Q ss_pred cc--------------------chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQ--------------------RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~--------------------d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. ....++.++.++|||||.+++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 00 1345788999999999999986644
No 75
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.79 E-value=1.7e-08 Score=109.23 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=76.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC--CCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L--pfpd~sFDlV~~s~~ 288 (615)
...+||||||+|.++..++.. .++|+|+....+..+.. .+.+.++ ++.+..+|+..+ .+++++||.|++.+
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~-ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF- 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLK-QIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF- 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC-
Confidence 357999999999999999854 67788877766655553 3344454 577888887654 47889999999766
Q ss_pred ccccccch------HHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRD------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+|.... ..++.++.|+|+|||.+.+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 36664333 468999999999999999976
No 76
>PRK04266 fibrillarin; Provisional
Probab=98.77 E-value=8e-08 Score=97.40 Aligned_cols=125 Identities=16% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC----CCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR----LPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~----Lpfpd~sFDlV~~s 286 (615)
++.+|||+|||+|.++..+++. .|+++|+++.++.... +.|+++ .++.+..+|... .+++ .+||+|++.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d 148 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKVDVIYQD 148 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccCCEEEEC
Confidence 3468999999999999999864 4677776665554332 344443 456777777653 1223 569999854
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCC---CCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE---AYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~---~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.. . ......++.++.|+|||||+|+++.+. .+...+ ....+.....++..+++.+.
T Consensus 149 ~~-~--p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~--~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 149 VA-Q--PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP--KEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred CC-C--hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH--HHHHHHHHHHHHHcCCeEEE
Confidence 31 1 111234689999999999999996442 111111 12233444556666666553
No 77
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.77 E-value=3e-08 Score=98.47 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEec-CCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d-~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
...-|||||||+|..+..|.+. ..+|+|++ +.|++.|.++-+...+..+| -+.+||..++||.|++.. +++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiS-----psML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISIS-AvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS-----PSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISIS-AVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCC-----HHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEee-eee
Confidence 5688999999999999988765 44566555 55555555555555566666 478999999999999776 688
Q ss_pred cccc-------h----HHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQR-------D----GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d-------~----~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+-+ + ..++..++.+|++|+..++..
T Consensus 124 WLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 124 WLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred eecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 8632 2 237888999999999999976
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=3.8e-08 Score=98.57 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=66.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++.. .|+++|+++.....+.. ..++.+. ++.+..+|......+.+.||+|++..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~- 153 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA- 153 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC-
Confidence 3478999999999999877642 56777666554443332 2222344 57888888776655678999999876
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.+.. ...+.+.|||||.|++..
T Consensus 154 ~~~~~------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPDI------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Ccccc------hHHHHHhhCCCcEEEEEE
Confidence 34332 346677899999999854
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.75 E-value=1.2e-08 Score=98.45 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.+...+.. +.+...|.... .++++||+|+|+- -+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~~~~d~~~~-~~~~~fD~Iv~NP-P~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEVVQSDLFEA-LPDGKFDLIVSNP-PF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEEEESSTTTT-CCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCcccccccccccccc-ccccceeEEEEcc-ch
Confidence 467999999999999998864 3666666555443333 222334555 77777775432 3468999999875 34
Q ss_pred ccccc-----hHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 DWLQR-----DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 ~~~~d-----~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+.-.+ ...++.+..+.|+|||.|++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 43333 35689999999999999987654
No 80
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.75 E-value=3.6e-08 Score=99.35 Aligned_cols=95 Identities=17% Similarity=0.076 Sum_probs=67.7
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC----------------CCcEEEEecCCCCCCC-
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG----------------IPSTLGVLGTKRLPYP- 276 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg----------------~~~~~~v~d~~~Lpfp- 276 (615)
..+|||+|||.|..+.+|+++ .|+|+|+++..+..+ +++++ ..+.+.++|...++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQF----FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHH----HHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 358999999999999999976 566666655444322 22333 3467788888777533
Q ss_pred CCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEE
Q 007165 277 SRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvi 315 (615)
...||+|+-..+ +++++.. ..++..+.++|+|||.+++
T Consensus 114 ~~~fd~v~D~~~-~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAA-LIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHh-HhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 258999997764 5666433 4699999999999996444
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.75 E-value=6.8e-08 Score=102.95 Aligned_cols=119 Identities=21% Similarity=0.225 Sum_probs=81.4
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEeccc---
Q 007165 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRC--- 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~--~~~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~--- 288 (615)
++.+|||+|||+|.++..++ ...++|+|+++.++..+..+ ++..+.. +.+..+|+.++|+++++||+|++.--
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~n-l~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARIN-LEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHH-HHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 34689999999998876654 34677777776666554433 2333443 57888999999988899999998421
Q ss_pred --ccc--cccc-hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 289 --RID--WLQR-DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 289 --~l~--~~~d-~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
... ...+ ...++.++.++|+|||++++..|... .+..+++...| +.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~-----------~~~~~~~~~g~-i~ 311 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI-----------DLESLAEDAFR-VV 311 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC-----------CHHHHHhhcCc-ch
Confidence 011 1112 36799999999999999999887541 23355666666 44
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.74 E-value=2.1e-08 Score=96.03 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHc--------CCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 247 DVHENQIQFALER--------GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 247 Dls~a~i~~A~er--------g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+|+.|++.|+++ ..++.+.++|++++|+++++||+|++++ ++++++++..+++|++|+|||||.|++.+.
T Consensus 4 D~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~-~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY-GLRNVVDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred cCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc-hhhcCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4455555555432 1257899999999999999999999988 699999999999999999999999998875
Q ss_pred C
Q 007165 319 E 319 (615)
Q Consensus 319 ~ 319 (615)
.
T Consensus 83 ~ 83 (160)
T PLN02232 83 N 83 (160)
T ss_pred C
Confidence 4
No 83
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.73 E-value=4.2e-08 Score=82.63 Aligned_cols=93 Identities=24% Similarity=0.385 Sum_probs=67.8
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHH---H--cCCCcEEEEecCCCCCC-CCCCceEEEeccc
Q 007165 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFAL---E--RGIPSTLGVLGTKRLPY-PSRSFELAHCSRC 288 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~---e--rg~~~~~~v~d~~~Lpf-pd~sFDlV~~s~~ 288 (615)
++||+|||+|.++..++.. .+.++| .++.+.+.++ + ......+...|...... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~- 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVD-----ISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP- 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEe-----CCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc-
Confidence 4899999999999888862 444554 4444444443 1 12346677777665543 557899999988
Q ss_pred cccc-ccchHHHHHHHHhccCCCeEEEEE
Q 007165 289 RIDW-LQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 289 ~l~~-~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
.+++ ......++..+.+.|+|||.++++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4776 667788999999999999999986
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.73 E-value=1.8e-07 Score=94.64 Aligned_cols=100 Identities=23% Similarity=0.357 Sum_probs=66.8
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEecccc--
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCR-- 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~-- 289 (615)
.+|||+|||+|.++..++.. .++++|+++..+..+. +.+...+.. +.+..+|... ++++++||+|+|+.-.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 57999999999999998854 4566666555444333 222333443 7788888655 4567899999984310
Q ss_pred ---cccc--------------------cchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 ---IDWL--------------------QRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 ---l~~~--------------------~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+.. .....++.++.++|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 0100 0113578899999999999999753
No 85
>PLN03075 nicotianamine synthase; Provisional
Probab=98.72 E-value=5.7e-08 Score=101.76 Aligned_cols=102 Identities=11% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCeEEEECCCCchHHHHHh-cC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLL-SH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~-~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+++|+|||||.|.++..++ .+ .++++|+++..+..+...+....++ .+.|..+|+...+-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 45889999999885544433 22 3556655554444333222121233 4889999987764335789999988
Q ss_pred ccccccc-cchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWL-QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~-~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.++|. +++.+++.++.+.|+|||+|++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 434442 678899999999999999999976
No 86
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.71 E-value=9e-08 Score=95.78 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..|+.. .|+++|+++..+..+. +.+.+.+. ++.+..+|.........+||+|++...
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~ 155 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA 155 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence 3468999999999999988754 2677776665554433 22333344 577888887655444578999997763
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... +...+.+.|+|||+|++..
T Consensus 156 -~~~------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 156 -GPK------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred -ccc------ccHHHHHhcCcCcEEEEEE
Confidence 333 3456788999999999864
No 87
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.71 E-value=7.5e-08 Score=101.14 Aligned_cols=144 Identities=21% Similarity=0.297 Sum_probs=91.0
Q ss_pred CCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh--cC-CCccccCChhchhHHHHHHHHHcC
Q 007165 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL--SH-DIIAMSLAPNDVHENQIQFALERG 260 (615)
Q Consensus 184 gg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~--~~-~V~gvdis~~Dls~a~i~~A~erg 260 (615)
-|..|..|.+.-.+...+++.... .++++|||+|||+|.++...+ ++ .|.++|+.+.-+..+. +.+..++
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~ 208 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYV------KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNG 208 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHS------STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT
T ss_pred CCCcccCCCCHHHHHHHHHHHHhc------cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcC
Confidence 456788888777777666665221 234689999999997665544 33 6889999887665555 4555667
Q ss_pred CCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhh
Q 007165 261 IPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKS 340 (615)
Q Consensus 261 ~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~ 340 (615)
+...+.+.... ....+.||+|+++-. . .-...++..+.++|+|||+|++|.--. + ..+.+...+++
T Consensus 209 ~~~~~~v~~~~--~~~~~~~dlvvANI~-~---~vL~~l~~~~~~~l~~~G~lIlSGIl~-----~---~~~~v~~a~~~ 274 (295)
T PF06325_consen 209 VEDRIEVSLSE--DLVEGKFDLVVANIL-A---DVLLELAPDIASLLKPGGYLILSGILE-----E---QEDEVIEAYKQ 274 (295)
T ss_dssp -TTCEEESCTS--CTCCS-EEEEEEES--H---HHHHHHHHHCHHHEEEEEEEEEEEEEG-----G---GHHHHHHHHHT
T ss_pred CCeeEEEEEec--ccccccCCEEEECCC-H---HHHHHHHHHHHHhhCCCCEEEEccccH-----H---HHHHHHHHHHC
Confidence 76666543222 233589999997641 1 223557888999999999999987432 1 12344444555
Q ss_pred cceEEEEee
Q 007165 341 MCWKIVSKK 349 (615)
Q Consensus 341 l~W~l~~~~ 349 (615)
.|.+....
T Consensus 275 -g~~~~~~~ 282 (295)
T PF06325_consen 275 -GFELVEER 282 (295)
T ss_dssp -TEEEEEEE
T ss_pred -CCEEEEEE
Confidence 77765443
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=98.70 E-value=1.4e-07 Score=91.10 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC---cEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP---STLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~---~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++.. +++++|+++..+..+. +.+...+.. +.+...|... ++.+++||+|+++...+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAK-CNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHH-HHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 467999999999999988754 5666665554443332 222222333 6677777544 34556899999764211
Q ss_pred cc--------------------ccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 291 DW--------------------LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 291 ~~--------------------~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
+. ......+++++.++|||||.+++..+.... -..+..+++...|+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--------~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--------EDEVLEYLEKLGFEAE 169 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--------HHHHHHHHHHCCCeee
Confidence 10 111345899999999999999988765421 1234556666666544
No 89
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.70 E-value=7.1e-08 Score=101.67 Aligned_cols=103 Identities=16% Similarity=0.238 Sum_probs=64.8
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc-CCCcEEEEecCCC-CCCCCCC---ceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKR-LPYPSRS---FELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~~-Lpfpd~s---FDlV~~ 285 (615)
..+|||+|||+|..+..|+++ .++++|+++.++..++.+..... ++++...++|..+ ++++... .++++.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 367999999999999888754 35555555444443332222211 3456667888765 4444332 233333
Q ss_pred cccccccccc--hHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCRIDWLQR--DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
....+++++. ...+|+++.++|+|||.|++...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3334666553 34699999999999999998663
No 90
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1.6e-07 Score=98.36 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=76.8
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc--C-CCccccCChhchhHHHHHHHHHcCCC
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGIP 262 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~--~-~V~gvdis~~Dls~a~i~~A~erg~~ 262 (615)
-.|..|-+.-.....+.++-.. .++++|||+|||+|.++...+. + .+.|+|+.+.-+..++ +.++.++++
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~------~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~-eNa~~N~v~ 211 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLL------KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAAR-ENARLNGVE 211 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhh------cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHH-HHHHHcCCc
Confidence 3455554444444444443211 2568899999999987776653 3 6889988887776555 455555655
Q ss_pred c--EEEEecCCCCCCCC-CCceEEEecccccccccch-HHHHHHHHhccCCCeEEEEEcC
Q 007165 263 S--TLGVLGTKRLPYPS-RSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 263 ~--~~~v~d~~~Lpfpd-~sFDlV~~s~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. .....+ .+..+. +.||+|+|+-. .++ ..+..++.+.|||||++++|.-
T Consensus 212 ~~~~~~~~~--~~~~~~~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 212 LLVQAKGFL--LLEVPENGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred hhhhccccc--chhhcccCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEEEee
Confidence 2 222222 222333 59999997652 233 4688999999999999999983
No 91
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.69 E-value=1.4e-07 Score=93.18 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=76.0
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCC-CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRL-PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~L-pfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++..++. .+|+++|+++..+..+. +.++..+ .++.+..+|.... +..++.||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~-~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR-RNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 346899999999999887653 25777777665554433 2333334 2467777776543 3334689999974
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcce
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W 343 (615)
. ...+...++.++.++|+|||++++..... +....+...++..++
T Consensus 119 ~----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 119 G----GSEKLKEIISASWEIIKKGGRIVIDAILL--------ETVNNALSALENIGF 163 (198)
T ss_pred C----CcccHHHHHHHHHHHcCCCcEEEEEeecH--------HHHHHHHHHHHHcCC
Confidence 3 23456789999999999999999855422 123444455555555
No 92
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.68 E-value=5.9e-08 Score=102.15 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||||||+|.++..++++ +++++|+ +..+..+. +.+.+.+. ++.+..+|....++++ +|+|++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~- 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCR- 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCccceEEEEecCccCCCCCC--CCEEEeEh-
Confidence 3478999999999999988865 3555554 22222211 23333444 4678888877666653 69999888
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++|...+. ..+|+++.++|+|||++++.+.
T Consensus 224 ~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 224 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 46655443 4699999999999999999874
No 93
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.68 E-value=1.2e-07 Score=94.92 Aligned_cols=91 Identities=25% Similarity=0.349 Sum_probs=61.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||||||+|.++..|++. .|+++|+ ++.+++.|+++ +. .+.+..+| ++..+++||+|++.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~-----s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~ 134 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDI-----SPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCL 134 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEEC-----CHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence 3468999999999999999865 4555555 44444444433 33 46677766 44456889999998
Q ss_pred ccccccccch--HHHHHHHHhccCCCeEEE
Q 007165 287 RCRIDWLQRD--GILLLELDRLLRPGGYFV 314 (615)
Q Consensus 287 ~~~l~~~~d~--~~~L~ei~RvLkPGG~Lv 314 (615)
. +++|.++. ..++.++.+++++|+.+.
T Consensus 135 ~-~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 135 D-VLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred c-hhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 8 56555433 568888888876554433
No 94
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.67 E-value=1.7e-08 Score=90.26 Aligned_cols=100 Identities=27% Similarity=0.391 Sum_probs=68.3
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCC--CCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP--YPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lp--fpd~sFDlV~~s~~ 288 (615)
.+|||+|||+|.++..++... ...+.+.|+++..++.++.+ + .++.+.++|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 479999999999998887542 23444445555555555443 2 25788999976665 77899999998652
Q ss_pred cccccc-------chHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQ-------RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~-------d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...... ....+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 221111 124689999999999999999775
No 95
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.66 E-value=1.2e-07 Score=96.89 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
....++||||+|.|..+..|+.. .|.+. +.|..|...-+++|..+ .+..++.-.+.+||+|.|.+ ++.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT-----E~S~~Mr~rL~~kg~~v----l~~~~w~~~~~~fDvIscLN-vLD 162 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYAT-----EASPPMRWRLSKKGFTV----LDIDDWQQTDFKFDVISCLN-VLD 162 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEee-----cCCHHHHHHHHhCCCeE----EehhhhhccCCceEEEeehh-hhh
Confidence 35678999999999999999864 45555 55666767777788643 33333443456899999999 799
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-..+|..+|+++++.|+|+|.++++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999999999999875
No 96
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.66 E-value=6.4e-08 Score=104.96 Aligned_cols=98 Identities=14% Similarity=0.221 Sum_probs=66.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
.+|||+|||+|.++..++.+ .|+++|+++..+..+...... .+. .+.+...|.... ++..+||+|+|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNP- 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALSG-VEPFRFNAVLCNP- 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEcccccc-CCCCCEEEEEECc-
Confidence 57999999999999988754 566666655544444322221 222 356666664322 3446899999875
Q ss_pred cccccc-----chHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQ-----RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~-----d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-+|... ...+++.++.++|+|||.|++..
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 344321 12568999999999999999986
No 97
>PTZ00146 fibrillarin; Provisional
Probab=98.64 E-value=3.7e-07 Score=95.45 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC---CCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR---LPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~---Lpfpd~sFDlV~~s 286 (615)
+..+|||+|||+|.++.++++. .|+++|+++.+. ..+++.+.++ .++.+.+.|+.. +..+..+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~-~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSG-RDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHH-HHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 4468999999999999999864 478888775433 2455666554 456777778643 22234589999977
Q ss_pred ccccccccch-HHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. + .++. ..++.++.++|||||+|++..
T Consensus 210 v-a---~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 210 V-A---QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred C-C---CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 5 2 2333 456779999999999999964
No 98
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.57 E-value=1.7e-07 Score=90.68 Aligned_cols=103 Identities=23% Similarity=0.294 Sum_probs=70.8
Q ss_pred CeEEEECCCCchHHHHHhcCC----CccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 217 RNVLDVGCGVASFGAYLLSHD----IIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~----V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
.+|||+|||.|.+...|++.. .+|+|+++..+.-|+ .+|..++.+ +.|.+.|+..-.+.++.||+|+--..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~-niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQ-NIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHH-HHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 389999999999999998652 445544443332222 334445655 89999998776777888999875321
Q ss_pred ccccccc-----hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 289 RIDWLQR-----DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 289 ~l~~~~d-----~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++...++ +..++..+.++|+|||.|+|+.=+.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1222222 2347899999999999999987543
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.57 E-value=4e-07 Score=90.69 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=63.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+|||+|||+|.++..|+.. .++++|+++..+..+...+ ...+. ++.+..+|......+.++||+|++.. .++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~-~~~ 155 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRL-KQLGLHNVSVRHGDGWKGWPAYAPFDRILVTA-AAP 155 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHH-HHCCCCceEEEECCcccCCCcCCCcCEEEEcc-Cch
Confidence 3478999999999988877653 5666666544443333222 22243 46777777544322347899999876 344
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
++ ..++.+.|+|||.+++...
T Consensus 156 ~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 156 EI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred hh------hHHHHHhcCCCcEEEEEEc
Confidence 33 4567899999999998764
No 100
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.57 E-value=8.6e-07 Score=88.12 Aligned_cols=102 Identities=23% Similarity=0.415 Sum_probs=67.2
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhchhHHHH----HHHHHcCCC-c-EEEEecCCCC--CC------CCCCceEE
Q 007165 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQI----QFALERGIP-S-TLGVLGTKRL--PY------PSRSFELA 283 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i----~~A~erg~~-~-~~~v~d~~~L--pf------pd~sFDlV 283 (615)
+|||||||||..+.+++.+ ...+..-+.|...... +.+.+.+.+ + .-...|+..- +. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999875 2233444444444332 122233321 1 0122333322 22 35689999
Q ss_pred Eecccccccccch--HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 284 HCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 284 ~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+|.+ .+|..+.. +.+|..+.++|+|||.|++..|..+
T Consensus 107 ~~~N-~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 107 FCIN-MLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred eehh-HHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 9999 58887655 5699999999999999999998753
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.56 E-value=5.5e-07 Score=88.68 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhc----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
+..+|||+|||+|.++..++. ..|+++|+++..+..++. .+.+.+. ++.+..+|+.. ++.....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 346899999999999888763 357777776665544442 2223343 46777777643 222223467765322
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+...++.++.++|+|||+|++..+.
T Consensus 118 ----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234577999999999999999998754
No 102
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.54 E-value=4.4e-07 Score=88.78 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFD 281 (615)
++.+|||+|||+|.++..++.. .|+++|+++.. ....+.+..+|..+.+ +++++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 3468999999999988877643 47777776532 1134566777765532 4567899
Q ss_pred EEEecccccc----ccc-------chHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRID----WLQ-------RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~----~~~-------d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++..+ .+ |.. +...++.++.++|+|||++++..
T Consensus 101 ~V~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAA-PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCC-CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9997542 11 111 23578999999999999999965
No 103
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.53 E-value=8.4e-07 Score=92.90 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=67.6
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEeccc-
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRC- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~- 288 (615)
..+|||+|||+|.++..++.. +|+++|+++..+..+. +.++..++ ++.+..+|... ++++++||+|+++--
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 367999999999999998853 5666766655554443 22333454 46788888643 234568999998510
Q ss_pred ----c-------ccccc------------chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 ----R-------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ----~-------l~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. +++-+ ....++.++.++|+|||++++....
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0 11111 1245789999999999999997753
No 104
>PRK00811 spermidine synthase; Provisional
Probab=98.52 E-value=9.2e-07 Score=92.54 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=69.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----------CCCcEEEEecCCCC-CCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----------GIPSTLGVLGTKRL-PYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----------g~~~~~~v~d~~~L-pfpd~s 279 (615)
.+++||+||||.|..+..+++. +|+++ |+++.+++.|++. ..++.+...|+... ...+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~V-----Eid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLV-----EIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEE-----eCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCc
Confidence 4578999999999999998764 34445 4455555555542 23567788886442 334678
Q ss_pred ceEEEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 280 FELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 280 FDlV~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
||+|++-. .-++.+. ...+++.+.+.|+|||.+++.....+
T Consensus 151 yDvIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 151 FDVIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred ccEEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 99999753 2333222 15688999999999999998765443
No 105
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.51 E-value=1.6e-06 Score=94.83 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=75.8
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC-CCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~ 291 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 47999999999999887642 5667776666554444 23333466788888886543332 468999998531110
Q ss_pred ------------cc--------cc----hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEE
Q 007165 292 ------------WL--------QR----DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 292 ------------~~--------~d----~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l 345 (615)
+- .+ ...++.++.+.|+|||++++..... .-+.+..++++.+|..
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~---------Q~e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD---------QGAAVRGVLAENGFSG 400 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc---------HHHHHHHHHHHCCCcE
Confidence 00 01 1356777889999999999866432 1234556666666644
No 106
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.48 E-value=4.8e-07 Score=89.85 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=70.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
...|-|+|||.+.++..+.+. .|...|+.... -.+..+|+..+|++++++|+|+++.+ |. -.
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n---------------~~Vtacdia~vPL~~~svDv~VfcLS-LM-GT 135 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN---------------PRVTACDIANVPLEDESVDVAVFCLS-LM-GT 135 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SS---------------TTEEES-TTS-S--TT-EEEEEEES-----SS
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCC---------------CCEEEecCccCcCCCCceeEEEEEhh-hh-CC
Confidence 467999999999999877643 45556554321 23667899999999999999998764 43 35
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
+...++.|+.|+|||||.|.|+....... .-+.+.+..+++++++..+..
T Consensus 136 n~~~fi~EA~RvLK~~G~L~IAEV~SRf~------~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 136 NWPDFIREANRVLKPGGILKIAEVKSRFE------NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp -HHHHHHHHHHHEEEEEEEEEEEEGGG-S-------HHHHHHHHHCTTEEEEEEE-
T ss_pred CcHHHHHHHHheeccCcEEEEEEecccCc------CHHHHHHHHHHCCCeEEeccc
Confidence 67789999999999999999987432111 124556678899999887654
No 107
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=7.7e-07 Score=98.28 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--CCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--YPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--fpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+...+ +.+...|..+.+..+|+..++ ++.++||.|++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3468999999999999888753 4666666655554433 333444666778888887654 34578999994
Q ss_pred -cccc-c------ccccc----------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRCR-I------DWLQR----------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~~-l------~~~~d----------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+... + .|... ...+|.++.++|||||++++++-..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3211 1 12111 2358999999999999999988543
No 108
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.45 E-value=1.4e-06 Score=90.95 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=67.2
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecc---
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSR--- 287 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~--- 287 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..+.. +.+..+|... ++++++||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 57999999999999888753 5666666554443333 222233443 7788888644 34445899999851
Q ss_pred ---------ccccccc------------chHHHHHHHHhccCCCeEEEEEcCC
Q 007165 288 ---------CRIDWLQ------------RDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 288 ---------~~l~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.+..|-+ ....++.++.++|+|||++++....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 0122222 2356889999999999999997754
No 109
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.43 E-value=1e-06 Score=93.21 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=67.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccc-
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCR- 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~- 289 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+..+|... ++++++||+|+++--.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 57999999999999988753 5667766665554444 22333344 47788888643 2345689999985200
Q ss_pred -----------ccccc------------chHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 -----------IDWLQ------------RDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 -----------l~~~~------------d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+++-+ ....++.++.++|+|||++++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11111 124678999999999999999764
No 110
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.42 E-value=7.2e-07 Score=93.07 Aligned_cols=105 Identities=19% Similarity=0.360 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHH--c----CCCcEEEEecC------CCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE--R----GIPSTLGVLGT------KRLPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~e--r----g~~~~~~v~d~------~~Lpfpd~s 279 (615)
++..+||+|||-|.-+.....+ .++++||+.+.+..++.+.-.- + ..++.|..+|. ..+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 4567999999999765555443 5677877766555444322111 1 23577888884 345666667
Q ss_pred ceEEEeccccccccc----chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 280 FELAHCSRCRIDWLQ----RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 280 FDlV~~s~~~l~~~~----d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
||+|-|-+| +||.- ..+.+|.++.+.|||||+|+-+.|+.
T Consensus 197 fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 197 FDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred cceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 999999984 88853 23458999999999999999999876
No 111
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=1.1e-07 Score=94.95 Aligned_cols=98 Identities=19% Similarity=0.292 Sum_probs=80.0
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..++|||||.|.....|....|. .+.-.|.|..|++.++.. ++.....+.|.+.|+|.+++||+|+++. .+||+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSl-slHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSL-SLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhh-hhhhh
Confidence 46999999999999999876432 223335566666666543 4567788899999999999999999888 69999
Q ss_pred cchHHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+....+.++...|||.|.|+-+.
T Consensus 151 NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 151 NDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred ccCchHHHHHHHhcCCCccchhHH
Confidence 999999999999999999999754
No 112
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=9.1e-07 Score=92.37 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=62.6
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCc-EEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPS-TLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~-~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+|||+|||.|.++..|++. .++-+|++..-+..++...+ ..+++. .+...| ...+..+ +||+|+|+- -+|-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~-~N~~~~~~v~~s~-~~~~v~~-kfd~IisNP-Pfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA-ANGVENTEVWASN-LYEPVEG-KFDLIISNP-PFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH-HcCCCccEEEEec-ccccccc-cccEEEeCC-CccC
Confidence 7999999999999999865 34444444433333332222 224444 344433 3334444 999999876 3553
Q ss_pred ccch-----HHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQRD-----GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d~-----~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-.+. .+++.+..+.|++||.|.|...
T Consensus 237 G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 237 GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 2221 3689999999999999999875
No 113
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.41 E-value=9.3e-07 Score=97.59 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEE--EEecCCCCCC--CCCCceEEEe-
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTL--GVLGTKRLPY--PSRSFELAHC- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~--~v~d~~~Lpf--pd~sFDlV~~- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+.... +.++..|+.+.+ ..+|....++ ++++||.|++
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 3468999999999988887753 5666766655544333 333334665444 4455544443 5678999985
Q ss_pred ---cc-cccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 ---SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 ---s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+. .+++..++ ...+|.++.++|||||++++++-..
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 22 12333332 2469999999999999999988554
No 114
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.41 E-value=5e-07 Score=96.53 Aligned_cols=105 Identities=20% Similarity=0.392 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHH------c----CCCcEEEEecCCC------CCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALE------R----GIPSTLGVLGTKR------LPY 275 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~e------r----g~~~~~~v~d~~~------Lpf 275 (615)
+..+|||+|||-|.-..-...+ .++|+|++...+.++..+...- + ...+.+..+|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 5678999999988644444433 5678888777776665443110 0 1345667777532 222
Q ss_pred CCCCceEEEecccccccccch----HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 276 PSRSFELAHCSRCRIDWLQRD----GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 276 pd~sFDlV~~s~~~l~~~~d~----~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
....||+|-|.+ ++||.-.. ..+|..+...|+|||+|+.++|+.
T Consensus 142 ~~~~FDvVScQF-alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQF-ALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES--GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHH-HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 235999999998 58886332 459999999999999999999875
No 115
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=89.24 Aligned_cols=120 Identities=19% Similarity=0.248 Sum_probs=79.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc----C--CCcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER----G--IPSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er----g--~~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
..+|||+|||+|..+..++++. .-..+.++++++.+.++|++. + .++.+...|...+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5789999999999999998751 113444445556666666543 1 24778888876654 3345799999963
Q ss_pred ccc---------------cc--ccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEE
Q 007165 288 CRI---------------DW--LQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 288 ~~l---------------~~--~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l 345 (615)
-.+ +| ..+.+.+++...++|||||++.+..|+. ...++.+++++..|..
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------rl~ei~~~l~~~~~~~ 189 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------RLAEIIELLKSYNLEP 189 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------HHHHHHHHHHhcCCCc
Confidence 100 01 1124568899999999999999987653 2344556666666543
No 116
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.39 E-value=2.1e-06 Score=87.00 Aligned_cols=101 Identities=16% Similarity=0.027 Sum_probs=71.0
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHH------------HHHcCCCcEEEEecCCCCCCC---CC
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQF------------ALERGIPSTLGVLGTKRLPYP---SR 278 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~------------A~erg~~~~~~v~d~~~Lpfp---d~ 278 (615)
..+||+.|||.|.-+.+|+++ .|+|+|+++.-+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 468999999999999999976 5666666554443321100 011355789999998888642 26
Q ss_pred CceEEEeccccccccc-ch-HHHHHHHHhccCCCeEEEEEc
Q 007165 279 SFELAHCSRCRIDWLQ-RD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~-d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.||+|+-..+ +..++ +. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~-~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGA-YIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehh-HhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 8999886553 44443 33 469999999999999988754
No 117
>PRK04457 spermidine synthase; Provisional
Probab=98.34 E-value=4.4e-06 Score=86.50 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=67.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------CCCcEEEEecCCCC-CCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------GIPSTLGVLGTKRL-PYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------g~~~~~~v~d~~~L-pfpd~sFDlV~~s~ 287 (615)
.+++|||||||+|.++..++... ....+...|+++.+++.|++. ..++.+.++|+... .-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999887541 223344446666666776654 13467788885432 22236899999643
Q ss_pred ccccc--cc---chHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDW--LQ---RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~--~~---d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++. .+ ....+++++.++|+|||.+++..
T Consensus 145 --~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 145 --FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred --CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 221 11 12579999999999999999954
No 118
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.34 E-value=2.3e-06 Score=94.68 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC----CCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP----YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp----fpd~sFDlV~ 284 (615)
++.+|||+|||+|..+..++.. .|+++|++...+...+ +.+...|+ ++.+..+|+..++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3468999999999998887643 4677766665554443 23333455 4678888887765 4467899999
Q ss_pred e----cc-cccccccc----------------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 285 C----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 285 ~----s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ +. .+++..++ ...+|.++.++|||||+|+.++-..
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5 21 12333232 3468999999999999999987443
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.32 E-value=2.2e-06 Score=91.28 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=64.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+|||||||+|.++..++.. .|+++|+++..+..+. +.+++.+. ++.+..+|....+...++||+|++.. .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~-g 158 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV-G 158 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcccccCCccEEEECC-c
Confidence 468999999999999988753 3666766655444333 22233344 46777788666555557899999875 3
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
++.. ...+.+.|+|||.+++..
T Consensus 159 ~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 159 VDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hHHh------HHHHHHhcCCCCEEEEEe
Confidence 4322 345678999999999865
No 120
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.31 E-value=2.2e-06 Score=88.32 Aligned_cols=97 Identities=22% Similarity=0.346 Sum_probs=63.9
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
+..+|||+|||+|.++..++.. .++++|+++. +++.|++. ..++.+..+|... ++++++||+|++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~-----~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE-----ALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEE
Confidence 3468999999999999888753 4556655544 44444432 2357777777633 233578999998
Q ss_pred ccccc-----c--------c------------ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRI-----D--------W------------LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l-----~--------~------------~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.-.+ + + ......++.++.++|+|||++++..
T Consensus 182 npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 182 NPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 42100 0 0 0112457888899999999999965
No 121
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.29 E-value=6.9e-06 Score=85.28 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sF 280 (615)
.+++||+||||+|.++..++.. +++++|+ ++.+++.|++. ...+.+...|... +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~vei-----d~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDI-----DEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeC-----CHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 3468999999999999888754 3445544 44554555442 1235566666432 12224789
Q ss_pred eEEEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 281 ELAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 281 DlV~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
|+|++.. ..+..+. ...+++.+.++|+|||.+++.....+
T Consensus 147 DvIi~D~-~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~ 190 (270)
T TIGR00417 147 DVIIVDS-TDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPW 190 (270)
T ss_pred cEEEEeC-CCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcc
Confidence 9999754 2222221 24688999999999999999865543
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.28 E-value=2.6e-06 Score=94.60 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..+++ ..|+++|+++..+..+. +.+...|+ ++.+..+|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 346899999999998877764 25777777666554443 33344465 3678888887765 5578999995
Q ss_pred -cccc-c------cccc----------chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRCR-I------DWLQ----------RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~~-l------~~~~----------d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+... + .|.. ....+|.++.++|||||++++++-..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2211 1 1111 12358999999999999999988554
No 123
>PLN02366 spermidine synthase
Probab=98.27 E-value=9.3e-06 Score=86.08 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC--CCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL--PYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L--pfpd~sFDl 282 (615)
.+++||+||||.|..+..+++. .+.. +.-.|+++.+++.|++. ..++.+..+|+... ..++++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~--V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQ--IDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCe--EEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3578999999999999999865 2222 22234455555666553 23577888885332 123578999
Q ss_pred EEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCCCCC
Q 007165 283 AHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEAYAH 323 (615)
Q Consensus 283 V~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~~~~ 323 (615)
|++-. .-++.+. ...+++.+.++|+|||.++....+.|..
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 99743 2332221 1458999999999999999876655543
No 124
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.27 E-value=3.2e-06 Score=87.55 Aligned_cols=105 Identities=16% Similarity=0.106 Sum_probs=69.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEe---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHC--- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~--- 285 (615)
++.+|||+|||+|..+..++.. .|+++|+++..+.... +.+...++ ++.+...|...++...+.||.|++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3468999999999998887642 4667766665554333 22233354 467777887766655567999985
Q ss_pred -ccc-cccccc----------------chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 -SRC-RIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 -s~~-~l~~~~----------------d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. ++...+ ....+|.++.++|||||+++.++-..
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 211 111111 12348999999999999999987443
No 125
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.26 E-value=3.3e-06 Score=83.93 Aligned_cols=131 Identities=18% Similarity=0.333 Sum_probs=71.3
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhc--CCCc--cccCChhchhHHHHHHHH
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLS--HDII--AMSLAPNDVHENQIQFAL 257 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG----~~a~~L~~--~~V~--gvdis~~Dls~a~i~~A~ 257 (615)
+.|.+...++......+++...... ..++.-+|+..||++| +++..|.+ .... -+.|.+.|++...++.|+
T Consensus 3 T~FFRd~~~f~~l~~~vlp~~~~~~-~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 3 TYFFRDPEQFEALRDEVLPPLLARA-RPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp --TTTTTTHHHHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHhhcccc-CCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3455555555544445553111111 1124578999999999 44444444 1111 356677788888888876
Q ss_pred Hc--------CC-------------------------CcEEEEecCCCCCCCCCCceEEEecccccccccch--HHHHHH
Q 007165 258 ER--------GI-------------------------PSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLE 302 (615)
Q Consensus 258 er--------g~-------------------------~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~e 302 (615)
+. ++ .+.|...|....+.+.+.||+|+|.+. +-|+... .+++..
T Consensus 82 ~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV-lIYF~~~~~~~vl~~ 160 (196)
T PF01739_consen 82 AGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV-LIYFDPETQQRVLRR 160 (196)
T ss_dssp HTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SS-GGGS-HHHHHHHHHH
T ss_pred hCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCE-EEEeCHHHHHHHHHH
Confidence 52 11 256777776663345588999999995 5565544 569999
Q ss_pred HHhccCCCeEEEEEcC
Q 007165 303 LDRLLRPGGYFVYSSP 318 (615)
Q Consensus 303 i~RvLkPGG~Lvis~P 318 (615)
+.+.|+|||+|++...
T Consensus 161 l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HGGGEEEEEEEEE-TT
T ss_pred HHHHcCCCCEEEEecC
Confidence 9999999999999653
No 126
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.26 E-value=1.9e-05 Score=81.22 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=61.7
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-CCC-CCCCceEEEeccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LPY-PSRSFELAHCSRCRI 290 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-Lpf-pd~sFDlV~~s~~~l 290 (615)
.+|||+|||+|.++..++.. +|+++|+++..+..++.+ +...+ ..+..+|... ++- ..++||+|+++--.+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAG--GTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcC--CEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 57999999999999888743 466666555444333322 22223 4677777543 221 135799999753111
Q ss_pred -----c--------cc--------cc----hHHHHHHHHhccCCCeEEEEEcC
Q 007165 291 -----D--------WL--------QR----DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 291 -----~--------~~--------~d----~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. +- .+ ...++..+.++|+|||.+++...
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 00 01 23577888899999999999764
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=98.25 E-value=9.8e-06 Score=87.20 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------------CCCcEEEEecCCC-CCCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKR-LPYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------g~~~~~~v~d~~~-Lpfpd~sFD 281 (615)
.+++||+||||+|..++.+++.. ....+...|+++.+++.|++. ..++.+.+.|+.. +.-..++||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45789999999999888887641 122344446667777777751 3467778888654 333457899
Q ss_pred EEEecccccccc---cc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 282 LAHCSRCRIDWL---QR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 282 lV~~s~~~l~~~---~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+|++.. .-... .. ...++..+.+.|+|||.|++.....
T Consensus 229 VIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 999753 11111 11 1458999999999999999876433
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.23 E-value=2.8e-06 Score=94.05 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC-CCCCCceEEEe--
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAHC-- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp-fpd~sFDlV~~-- 285 (615)
++.+|||+|||+|..+.+++.. .|+++|+++..+.... +.+...|+. +.+...|+..++ +.+++||.|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 3468999999999888777642 5667766665554433 233344553 678888887766 45678999986
Q ss_pred --ccc-cccccc----------------chHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 --SRC-RIDWLQ----------------RDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 --s~~-~l~~~~----------------d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.. .+...+ ...++|.++.+.|||||.+++++-..
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 221 121111 12457899999999999999988543
No 129
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.23 E-value=5.6e-06 Score=84.25 Aligned_cols=112 Identities=16% Similarity=0.264 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
....|-|+|||.+.++..-. ..|..+|+.+. +-.+..+|+.++|++|++.|++++..+ + .-.
T Consensus 180 ~~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLS-L-Mgt 241 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLS-L-MGT 241 (325)
T ss_pred CceEEEecccchhhhhhccc-cceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHh-h-hcc
Confidence 34678999999998876221 25666765433 234567899999999999999987653 2 346
Q ss_pred chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC
Q 007165 295 RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
+...++.|++|+|+|||.++|+.--. +.+. -..+.+-+..+++.+.....
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAEv~S--Rf~d----v~~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAEVKS--RFSD----VKGFVRALTKLGFDVKHKDV 291 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEehhh--hccc----HHHHHHHHHHcCCeeeehhh
Confidence 78889999999999999999976432 1111 12345556778887765544
No 130
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.22 E-value=3.8e-06 Score=84.82 Aligned_cols=123 Identities=18% Similarity=0.314 Sum_probs=78.8
Q ss_pred CccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHc
Q 007165 186 THFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALER 259 (615)
Q Consensus 186 ~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~er 259 (615)
+.|.....-..+.+.+++..... ...+||+||||.|.....+++. .|.+.|+++ ..++..++.
T Consensus 48 ~rFfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp-----~Ai~~vk~~ 116 (264)
T KOG2361|consen 48 NRFFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP-----RAIELVKKS 116 (264)
T ss_pred ccccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh-----HHHHHHHhc
Confidence 34455555566666677664432 2237999999999988888743 345665554 444555443
Q ss_pred CC----CcEEEEec--CC--CCCCCCCCceEEEecccccccc-cch-HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 260 GI----PSTLGVLG--TK--RLPYPSRSFELAHCSRCRIDWL-QRD-GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 260 g~----~~~~~v~d--~~--~Lpfpd~sFDlV~~s~~~l~~~-~d~-~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.. .+.-.+.| .. .-|.+.+++|+|++.++ +.-+ ++. ..++.++.++|||||.+++-+-..
T Consensus 117 ~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv-LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 117 SGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV-LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cccchhhhcccceeccchhccCCCCcCccceEEEEEE-EeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 11 12222333 22 23466799999999884 4433 333 569999999999999999987443
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.21 E-value=3.2e-06 Score=84.78 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=60.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
++.+|||||||+|.+++.|+.. .|++++..+.-...+...++. .+. ++.+..+|...---+...||.|++..+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~-~~~~nv~~~~gdg~~g~~~~apfD~I~v~~a 150 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR-LGIDNVEVVVGDGSEGWPEEAPFDRIIVTAA 150 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH-HTTHSEEEEES-GGGTTGGG-SEEEEEESSB
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH-hccCceeEEEcchhhccccCCCcCEEEEeec
Confidence 4578999999999999888742 356776665444333322222 244 678888885443224568999998763
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..-+ -..+.+.|++||++++-..
T Consensus 151 -~~~i------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 151 -VPEI------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -BSS--------HHHHHTEEEEEEEEEEES
T ss_pred -cchH------HHHHHHhcCCCcEEEEEEc
Confidence 4422 2446778999999998553
No 132
>PHA03411 putative methyltransferase; Provisional
Probab=98.20 E-value=4.3e-06 Score=86.82 Aligned_cols=97 Identities=9% Similarity=0.105 Sum_probs=68.1
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc-
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR- 295 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d- 295 (615)
.+|||+|||+|.++..++.+. .+..+.+.|+++.+++.++++..++.+..+|+..+.. +++||+|+++-. +++...
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPP-F~~l~~~ 142 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPP-FGKINTT 142 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCC-ccccCch
Confidence 579999999999988876531 1234444466667777777765568888899877653 478999998653 333211
Q ss_pred -------------------hHHHHHHHHhccCCCeEEEEE
Q 007165 296 -------------------DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 296 -------------------~~~~L~ei~RvLkPGG~Lvis 316 (615)
...++....++|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 135677888999999977664
No 133
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.19 E-value=2.3e-06 Score=84.91 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=68.5
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-CC--CCCCCceEEEeccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-LP--YPSRSFELAHCSRCRI 290 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-Lp--fpd~sFDlV~~s~~~l 290 (615)
.+||||||.|.+...++.. +++|+|+...-+..+..+..+....++.+..+|+.. +. ++++++|.|+..+ --
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF-PD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-CC
Confidence 7999999999999998843 677888877666655543333333467888888766 32 5679999999766 34
Q ss_pred ccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.|.... ..++..+.++|+|||.|.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 444321 359999999999999999976
No 134
>PRK03612 spermidine synthase; Provisional
Probab=98.16 E-value=6.9e-06 Score=93.03 Aligned_cols=105 Identities=17% Similarity=0.047 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------------CCCcEEEEecCCCC-CCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRL-PYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------g~~~~~~v~d~~~L-pfpd~sFD 281 (615)
++++|||||||+|..+..+++.. ....+...|+++.+++.+++. ..++.+...|.... ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999999887641 112344446667777777762 13567778886542 22347899
Q ss_pred EEEecccccccccch-----HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 282 LAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 282 lV~~s~~~l~~~~d~-----~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
+|++.. ..+..+.. .++++.+.+.|+|||.+++...+.+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~ 419 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY 419 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 999764 23332221 3588999999999999999775443
No 135
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.16 E-value=1.2e-05 Score=82.02 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV 283 (615)
++.+|||.|.|+|.++.+|+.. +|++.+ ..+...+.|+++ ++ .+.+...|....-+++ .||+|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE-----~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~-~vDav 167 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYE-----IREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE-DVDAV 167 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEE-----ecHHHHHHHHHHHHHhccccceEEEecccccccccc-ccCEE
Confidence 4578999999999999999843 555554 444555555443 32 3677778877766664 89999
Q ss_pred EecccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+. . +++|-.++..+..+|+|||.+++-.|..
T Consensus 168 ~L-----D-mp~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 168 FL-----D-LPDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred EE-----c-CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 83 2 4789999999999999999999998876
No 136
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.8e-06 Score=80.84 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=63.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHH----cCC-CcEEEEecCC-CCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALE----RGI-PSTLGVLGTK-RLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~e----rg~-~~~~~v~d~~-~Lpfpd~sFDlV~~s 286 (615)
++.+|||||||+|+.++.|++- +|.+++..+ ...+.|++ .|. ++.+.++|.. .+| +...||.|+..
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~-----~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~~aPyD~I~Vt 145 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIE-----ELAEQARRNLETLGYENVTVRHGDGSKGWP-EEAPYDRIIVT 145 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcH-----HHHHHHHHHHHHcCCCceEEEECCcccCCC-CCCCcCEEEEe
Confidence 4578999999999999988854 566665544 44444433 355 6788888843 344 44789999987
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.+ ...+| ..+.+.|+|||++++-.-
T Consensus 146 aa-a~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 146 AA-APEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ec-cCCCC------HHHHHhcccCCEEEEEEc
Confidence 63 44443 334678999999998653
No 137
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.14 E-value=1.2e-05 Score=90.72 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=68.9
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-----CCchhHHhhcccccccccccccC----CCCC-Cccceecc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-----SARLKIIYDRGLIGTVHDWCESF----STYP-RTYDLLHA 527 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-----~~tL~~iy~RGliG~~hdwce~f----stYp-rtyDl~Ha 527 (615)
.=.-++|..+|.|+|.+++... |-+ |++=++- -..+.-+.++||-.+. =.|..+ .-+| .+-|-||-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~--~~iGiE~~~~~~~~~~~~~~~~~l~N~~-~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDA--LFIGVEVYLNGVANVLKLAGEQNITNFL-LFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHhcCcccccEEEE
Confidence 3477999999999999999744 321 4444432 1455667777763221 122222 1222 45555543
Q ss_pred cccccc------cccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhh
Q 007165 528 WKVFSE------IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITA 576 (615)
Q Consensus 528 ~~~fs~------~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~ 576 (615)
. |.+ -.+||=--.+.|-+|-|+|+|||.+-++ |..+..+.+...+..
T Consensus 424 ~--FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 424 L--FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred E--CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 2 332 1245556678889999999999999886 666666665555443
No 138
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.11 E-value=5.1e-06 Score=84.34 Aligned_cols=99 Identities=18% Similarity=0.272 Sum_probs=76.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC---CCCCCceEEEeccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP---YPSRSFELAHCSRC 288 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp---fpd~sFDlV~~s~~ 288 (615)
..+||||||.|.+...++.+ .++|+++...-+..+. +.+.+.++ ++.+...|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l-~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL-KKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH-HHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 46999999999999999865 6677777665554443 66777888 8999988865432 45669999997763
Q ss_pred ccccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.|.... ..++..+.++|+|||.|.+.+
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5554322 349999999999999999976
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.10 E-value=1.4e-05 Score=76.96 Aligned_cols=93 Identities=13% Similarity=0.049 Sum_probs=62.8
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
..+|||+|||+|.++..++++ +++++|+ ++.+++.++++ ..++.+..+|+..+++++.+||.|+++- -+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~-----~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~-Py 87 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEI-----DPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNL-PY 87 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEEC-----CHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECC-Cc
Confidence 468999999999999999875 4555655 44555555444 2357888999999988877899998653 23
Q ss_pred ccccchHHHHHHHHh--ccCCCeEEEEEc
Q 007165 291 DWLQRDGILLLELDR--LLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~~~~L~ei~R--vLkPGG~Lvis~ 317 (615)
+.. ...+..+.+ .+.++|.|++..
T Consensus 88 ~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 88 NIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 321 223333332 245888888754
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.08 E-value=1e-05 Score=89.74 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=67.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--CCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--fpd~sFDlV~~s~ 287 (615)
+.+|||+|||+|..+..++.. .|+++|+++..+.... +.+...|+ ++.+..+|...++ ++ ++||+|++.-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 468999999999999887753 4667766655543333 23333454 3677888876653 33 7899999631
Q ss_pred -c----cccccc---------c-------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 288 -C----RIDWLQ---------R-------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 288 -~----~l~~~~---------d-------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
| .+...+ + ...+|.++.++|||||.+++++-..
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 0 111111 0 1347999999999999999877443
No 141
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.08 E-value=7.2e-06 Score=83.25 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
.+.++|||||+|.|.++..++.+. ..+.+.-.|+ +..++.+++ ..++.+..+|.. -++|. +|+++..++ +|..
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~v-Lh~~ 171 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHV-LHDW 171 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESS-GGGS
T ss_pred cCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehh-hhhc
Confidence 345789999999999999998651 1222333344 334455555 667899999976 56665 999999995 6655
Q ss_pred cch--HHHHHHHHhccCCC--eEEEEEcC
Q 007165 294 QRD--GILLLELDRLLRPG--GYFVYSSP 318 (615)
Q Consensus 294 ~d~--~~~L~ei~RvLkPG--G~Lvis~P 318 (615)
++. ..+|+++++.|+|| |+|+|.++
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 554 46999999999999 99999874
No 142
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.04 E-value=2.2e-05 Score=82.39 Aligned_cols=125 Identities=13% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhcC--C-CccccCChhchhHHHHHHH
Q 007165 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSH--D-IIAMSLAPNDVHENQIQFA 256 (615)
Q Consensus 184 gg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG----~~a~~L~~~--~-V~gvdis~~Dls~a~i~~A 256 (615)
+.+.|.+...++......+.. ....-+|+..||++| +++..|.+. . -..+.|.+.|++...++.|
T Consensus 92 neT~FFRd~~~f~~L~~~~~~--------~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~A 163 (287)
T PRK10611 92 NLTAFFREAHHFPILAEHARR--------RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKA 163 (287)
T ss_pred CCCCccCCcHHHHHHHHHHHh--------cCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHH
Confidence 345666666665543332211 112368999999999 444444442 0 0124566667777777766
Q ss_pred HHc--------C----------------------------CCcEEEEecCCCCCCC-CCCceEEEecccccccccc--hH
Q 007165 257 LER--------G----------------------------IPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWLQR--DG 297 (615)
Q Consensus 257 ~er--------g----------------------------~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~~~~d--~~ 297 (615)
++. + -.+.|...|....+++ .+.||+|+|.++ +.|+.. ..
T Consensus 164 r~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv-liyF~~~~~~ 242 (287)
T PRK10611 164 RSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV-MIYFDKTTQE 242 (287)
T ss_pred HhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH-HhcCCHHHHH
Confidence 543 0 0145666666554443 578999999985 555533 46
Q ss_pred HHHHHHHhccCCCeEEEEEc
Q 007165 298 ILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 298 ~~L~ei~RvLkPGG~Lvis~ 317 (615)
+++..+.+.|+|||+|++-.
T Consensus 243 ~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHHHHHHhCCCcEEEEeC
Confidence 79999999999999998854
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.04 E-value=2e-05 Score=80.26 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=64.3
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC-C-----CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL-P-----YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L-p-----fpd~sFDl 282 (615)
.++|||+|||+|..+..++.. +++++|+.+.....+. +...+.|+ .+.+..+|+... + .++++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 578999999999877666532 5677766654443333 22233354 467788876442 2 12468999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|++-.. -+....++.++.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 985431 2334568999999999999988754
No 144
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.02 E-value=1.3e-05 Score=80.32 Aligned_cols=135 Identities=19% Similarity=0.268 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
....++||.|+|.|..+..|+-.....+|+. +..+..++.|++. ..-..+.+...+++..+.++||+|++-.|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3567899999999999998875433344443 4556666677643 22246667777777655689999999996
Q ss_pred ccccccch--HHHHHHHHhccCCCeEEEEEcCCCC----CCChhH---HHHHHHHHHHHhhcceEEEEeeCc
Q 007165 289 RIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAY----AHDPEN---RRIWNAMYDLLKSMCWKIVSKKDQ 351 (615)
Q Consensus 289 ~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~----~~~~e~---~~~w~~l~~La~~l~W~l~~~~~~ 351 (615)
+.|+.|. -.+|+++...|+|||.+++-....- .-++++ .+.-..+..+.++....++....|
T Consensus 132 -lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 -LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred -hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 6666655 4699999999999999998442110 011111 123456778888888887765544
No 145
>PHA03412 putative methyltransferase; Provisional
Probab=98.01 E-value=1.8e-05 Score=80.58 Aligned_cols=96 Identities=9% Similarity=0.092 Sum_probs=65.5
Q ss_pred CCeEEEECCCCchHHHHHhcCC--CccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccc---
Q 007165 216 IRNVLDVGCGVASFGAYLLSHD--IIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI--- 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~--V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l--- 290 (615)
..+|||+|||+|.++..++... .....+.+.|+++.+++.|++....+.+...|+...++ +++||+|+++-=..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 3689999999999998876430 01234555677777778887766668888889876665 46899999863111
Q ss_pred --ccc------cchHHHHHHHHhccCCCeE
Q 007165 291 --DWL------QRDGILLLELDRLLRPGGY 312 (615)
Q Consensus 291 --~~~------~d~~~~L~ei~RvLkPGG~ 312 (615)
+.. .-...++..+.++++||+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 000 0123478888898888776
No 146
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.00 E-value=3.2e-05 Score=67.31 Aligned_cols=99 Identities=30% Similarity=0.440 Sum_probs=65.0
Q ss_pred EEEECCCCchHH--HHHhcC--CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCC--CCCCC-CCceEEEeccccc
Q 007165 219 VLDVGCGVASFG--AYLLSH--DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKR--LPYPS-RSFELAHCSRCRI 290 (615)
Q Consensus 219 VLDIGCGtG~~a--~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~--Lpfpd-~sFDlV~~s~~~l 290 (615)
+||+|||+|... ..+... .++++|++...+.... ......+.. +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALAR-ARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHH-hhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999854 333332 3455555554443311 111111111 4667777665 78877 489999 666556
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 6555 7889999999999999999987654
No 147
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.96 E-value=4.5e-05 Score=74.78 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=66.6
Q ss_pred CCCeEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~ 288 (615)
+..+++|||||+|+.+..++ ..+|+++|-.+..+..-. +.++..|. ++.+..+++.. |+ ...+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~-~~~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALP-DLPSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhc-CCCCCCEEEECCC
Confidence 34689999999999998887 236777765544333222 22333344 46777777543 33 2227999997763
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...+.+|+.+...|||||++++..
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 456789999999999999999865
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.90 E-value=2.9e-05 Score=91.03 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCC-CCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-PYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~L-pfpd~sFDlV~~s~~ 288 (615)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+. ...++ .+.+..+|+.+. .-..++||+|++.--
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~-~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNF-ALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 468999999999999998854 4777777666655444333 22344 477888885432 111468999998421
Q ss_pred c----------cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 R----------IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~----------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. .....+...++..+.++|+|||.++++.-
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1 11122345688889999999999988653
No 149
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.89 E-value=0.00017 Score=73.42 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=57.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCC-----CCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKR-----LPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~-----Lpfpd~sFDlV~~ 285 (615)
...+|||+|||+|.|+..+++. .|+++|++..++.. .......+. +...++.. .+..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~-----~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE-----KLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-----HHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 4568999999999999999865 56777666554433 222222221 23333332 2212246888877
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.+ ..|..+.++|+| |.+++-.-+.
T Consensus 150 S~~---------~~l~~i~~~l~~-~~~~~L~KPq 174 (228)
T TIGR00478 150 SLI---------SILPELDLLLNP-NDLTLLFKPQ 174 (228)
T ss_pred ehH---------hHHHHHHHHhCc-CeEEEEcChH
Confidence 653 258889999999 8877665444
No 150
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.88 E-value=4.4e-05 Score=83.70 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=65.5
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCCC--C--CCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRLP--Y--PSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~Lp--f--pd~sFDlV~~ 285 (615)
+++|||+|||+|.++...+.. .|+++|+++..+..+. +.+...++ .+.+..+|+.... + ..++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999998765432 5777777666555444 22333344 4678888865431 1 2468999997
Q ss_pred ccccccc--------ccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCRIDW--------LQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~l~~--------~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.--.+.- ..+...++..+.++|+|||.|+..+-
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6321110 01223456678899999999998663
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.88 E-value=7.4e-05 Score=83.03 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
..+|||+|||+|.++..|+.. .|+++|+++.++..+. +.+...++ ++.+..+|+.. +++.+++||+|++.-
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~-~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP- 375 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERAR-ENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP- 375 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc-
Confidence 468999999999999999864 5667766666555444 22333344 57888888643 345567899998643
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+.. ....+..+.+ ++|++.++++.
T Consensus 376 --Pr~g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 376 --PRAG-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred --CCcC-hHHHHHHHHh-cCCCeEEEEEe
Confidence 1211 2345555555 69999999986
No 152
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.86 E-value=3.3e-05 Score=78.02 Aligned_cols=97 Identities=23% Similarity=0.197 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHH-HHcCC----------------CcEEEEecCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA-LERGI----------------PSTLGVLGTKRLPYPS 277 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A-~erg~----------------~~~~~v~d~~~Lpfpd 277 (615)
...+||+.|||.|.-+.+|+++ |.++.+.|+++..++.+ .+.+. .+.+.++|...++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 3468999999999999999986 34444555566666655 33322 2467788887776433
Q ss_pred -CCceEEEecccccccc-cch-HHHHHHHHhccCCCeEEEE
Q 007165 278 -RSFELAHCSRCRIDWL-QRD-GILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 278 -~sFDlV~~s~~~l~~~-~d~-~~~L~ei~RvLkPGG~Lvi 315 (615)
++||+|+=..+ +.-+ ++. .++.+.+.++|+|||.+++
T Consensus 114 ~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 VGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp HHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred cCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 57999985442 3333 333 5699999999999999443
No 153
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.85 E-value=3.1e-05 Score=83.78 Aligned_cols=98 Identities=18% Similarity=0.318 Sum_probs=79.2
Q ss_pred CeEEEECCCCchHHHHHh---cCCCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLL---SHDIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~---~~~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..++|+|||.|....++. ..++.+++.++.....+...... .++ ...+...+....||++++||.+.+.. +..
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~-~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld-~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKK-AYLDNKCNFVVADFGKMPFEDNTFDGVRFLE-VVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHH-HHhhhhcceehhhhhcCCCCccccCcEEEEe-ecc
Confidence 368999999998888776 35788888888777666533332 222 24457778899999999999999988 689
Q ss_pred cccchHHHHHHHHhccCCCeEEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
|.++...++.|+.|+++|||+++..
T Consensus 190 ~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999999999999999999999974
No 154
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.83 E-value=0.00016 Score=75.16 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=89.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C----------------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G---------------------------- 260 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g---------------------------- 260 (615)
...+||--|||.|.++..++.. .+.|.+++..|+-.. ++.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4468999999999999999876 344555554443111 222221 0
Q ss_pred ----------CCcEEEEecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChh-
Q 007165 261 ----------IPSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPE- 326 (615)
Q Consensus 261 ----------~~~~~~v~d~~~Lpfpd---~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e- 326 (615)
.+.....+|...+..++ ++||+|++.+ .+.-.++.-.++..+.++|||||+++=..|--|+..+.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~ 212 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS 212 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC
Confidence 00122233333332233 6999999887 57777777889999999999999888888877764433
Q ss_pred ------HHHHHHHHHHHHhhcceEEEEeeC
Q 007165 327 ------NRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 327 ------~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
..-.|+++..++++++|+...++.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 223689999999999999886554
No 155
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=5.8e-05 Score=79.04 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=67.0
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+|||+|||+|..+..++.. .|+++|+++.-+.-+. +.|...++ ++.+...|... +.. ++||+|+|+---+..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l~~~~~~~~dlf~-~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGLVRVLVVQSDLFE-PLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCCccEEEEeeeccc-ccC-CceeEEEeCCCCCCC
Confidence 7999999999999998854 5666666554443333 23333453 23333333211 122 489999985211111
Q ss_pred c-----c-------------------chHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcc
Q 007165 293 L-----Q-------------------RDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC 342 (615)
Q Consensus 293 ~-----~-------------------d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~ 342 (615)
- + -...++.++.+.|+|||.+++..-.. . -..+.++....+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~--q-------~~~v~~~~~~~~ 254 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT--Q-------GEAVKALFEDTG 254 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC--c-------HHHHHHHHHhcC
Confidence 0 0 11347889999999999999976322 1 134556666655
No 156
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.79 E-value=0.00011 Score=76.37 Aligned_cols=131 Identities=15% Similarity=0.252 Sum_probs=80.4
Q ss_pred CCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCc----hHHHHHhcCCC----ccccCChhchhHHHHHH
Q 007165 184 GGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVA----SFGAYLLSHDI----IAMSLAPNDVHENQIQF 255 (615)
Q Consensus 184 gg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG----~~a~~L~~~~V----~gvdis~~Dls~a~i~~ 255 (615)
.-|.|.+...++...-...++..... .. ...-+|+-.||++| +.+..|.+... ..+.|.+.|++...++.
T Consensus 67 n~T~FFR~~~~f~~l~~~v~p~l~~~-~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 67 NVTEFFRDPEHFEELRDEVLPELVKR-KK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhh-cc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 34556666666655444444311100 01 13578999999999 44444444321 24556666777777776
Q ss_pred HHHc---------CCC-------------------------cEEEEecCCCCCCCCCCceEEEecccccccccch--HHH
Q 007165 256 ALER---------GIP-------------------------STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD--GIL 299 (615)
Q Consensus 256 A~er---------g~~-------------------------~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~ 299 (615)
|+.. +++ +.|...|...-++..+.||+|+|-+ ++-|+..+ .++
T Consensus 145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRN-VLIYFd~~~q~~i 223 (268)
T COG1352 145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRN-VLIYFDEETQERI 223 (268)
T ss_pred HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcc-eEEeeCHHHHHHH
Confidence 6532 111 3444455433332447899999999 56666544 569
Q ss_pred HHHHHhccCCCeEEEEEc
Q 007165 300 LLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 300 L~ei~RvLkPGG~Lvis~ 317 (615)
+..++..|+|||+|++-.
T Consensus 224 l~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 224 LRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHhCCCCEEEEcc
Confidence 999999999999999954
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.78 E-value=0.00028 Score=75.23 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=57.4
Q ss_pred CcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC--c
Q 007165 190 DGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--S 263 (615)
Q Consensus 190 ~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~--~ 263 (615)
++...|+..+.+++........+.+...++||||||+|.....|+.+ .++++|+++..+..++...++..++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 34677898888887643221122234578999999999777666543 56667666655555443333221333 3
Q ss_pred EEEE-ecCCCC----CCCCCCceEEEecc
Q 007165 264 TLGV-LGTKRL----PYPSRSFELAHCSR 287 (615)
Q Consensus 264 ~~~v-~d~~~L----pfpd~sFDlV~~s~ 287 (615)
.+.. .+...+ ..+.+.||+|+|+-
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNP 197 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNP 197 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCC
Confidence 4432 222221 12467899999875
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.76 E-value=0.00019 Score=71.51 Aligned_cols=132 Identities=13% Similarity=0.058 Sum_probs=73.7
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
|-.+..|.+. .+....+...+.+.+.+... ....+|||+|||+|.++..++.+ .|+++|.++.....+.
T Consensus 22 g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-------~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 22 GRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-------IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-------cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 3444444322 23445555555555544311 12358999999999999864432 5666665544333222
Q ss_pred HHHHHHcCC-CcEEEEecCCC-CCCCCCCceEEEecccccccccc-hHHHHHHHHh--ccCCCeEEEEEcCC
Q 007165 253 IQFALERGI-PSTLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQR-DGILLLELDR--LLRPGGYFVYSSPE 319 (615)
Q Consensus 253 i~~A~erg~-~~~~~v~d~~~-Lpfpd~sFDlV~~s~~~l~~~~d-~~~~L~ei~R--vLkPGG~Lvis~P~ 319 (615)
+.++..+. ++.+...|+.. ++...++||+|++.- .|... ...++..+.. +|+|+|.+++..+.
T Consensus 94 -~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DP---Py~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 94 -KNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDP---PFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -HHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECC---CCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 22222343 46777777543 322345799999654 22222 2345555544 48999999998654
No 159
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.75 E-value=7.3e-05 Score=74.83 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=65.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-----CCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-----YPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-----fpd~sFDl 282 (615)
+++||+||+++|..+.+++.. +|+++++.+.....+. +..++.|. .+.+..+|+.. ++ .+.++||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 478999999999999998853 5667766654433332 33334454 47778877543 22 12368999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.-. .-.+...++..+.++|+|||.+++..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99543 22345668888999999999999865
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.72 E-value=7e-05 Score=72.81 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcC----CCcEEEEecCCC-C--C-CCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTKR-L--P-YPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg----~~~~~~v~d~~~-L--p-fpd~sFDl 282 (615)
.+.+|||+|||+|..+..++.. .|+..|..+ .-+.....++..+ ..+.+...+-.. . . ...++||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4578999999999777666543 566666654 2222222222222 334555554222 1 1 23468999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+++-+ +......+.++.-+.++|+|+|.++++.+.
T Consensus 123 IlasDv-~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDV-LYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecc-cchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 999995 555566678999999999999998887754
No 161
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.72 E-value=0.00016 Score=74.42 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHH----cCC--CcEEEEecCCCCCCC---CCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALE----RGI--PSTLGVLGTKRLPYP---SRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~e----rg~--~~~~~v~d~~~Lpfp---d~sF 280 (615)
++.+|||.|.|+|+++.+|+.. .|...++ ++...+.|++ .|+ .+.+...|...-.|+ ++.|
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~-----~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEF-----REDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEES-----SHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred CCCEEEEecCCcHHHHHHHHHHhCCCeEEEcccc-----CHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 4578999999999999999853 4555554 4444444433 354 478888887544442 3679
Q ss_pred eEEEecccccccccchHHHHHHHHhcc-CCCeEEEEEcCCC
Q 007165 281 ELAHCSRCRIDWLQRDGILLLELDRLL-RPGGYFVYSSPEA 320 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~~~L~ei~RvL-kPGG~Lvis~P~~ 320 (615)
|.|+ |. +++|-.++..+.++| ||||++++-.|..
T Consensus 115 Davf-----LD-lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 115 DAVF-----LD-LPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp EEEE-----EE-SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred cEEE-----Ee-CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 9998 32 477888999999999 9999999999876
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.72 E-value=9.4e-05 Score=78.88 Aligned_cols=100 Identities=24% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCCeEEEECCCCchHHHHH--hcCCCccccCChhchhHHHHHHHHHc----CC-CcEEE-EecCCCCCCCCCCceEEEe
Q 007165 214 GNIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALER----GI-PSTLG-VLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L--~~~~V~gvdis~~Dls~a~i~~A~er----g~-~~~~~-v~d~~~Lpfpd~sFDlV~~ 285 (615)
.++..|||==||||++.... .+.+++|.| ++..|++-|+.+ ++ ...+. ..|+..+|+++++||.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~D-----id~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSD-----IDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecc-----hHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 34568999999999886543 355566665 455555554432 32 23334 4499999999999999998
Q ss_pred cc----c-cccc--ccc-hHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SR----C-RIDW--LQR-DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~----~-~l~~--~~d-~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-- . ...- +.+ ...+|..+.++|++||++++..|
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 21 0 0111 112 25689999999999999999988
No 163
>PLN02476 O-methyltransferase
Probab=97.71 E-value=0.00013 Score=76.23 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-C----CCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y----PSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f----pd~sFDl 282 (615)
+++|||||+|+|..+.+++.. .++++|..+.....+. +..++.|. .+.+..+|+.. |+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 578999999999999988753 4666766654443333 22234455 47777777533 22 1 1368999
Q ss_pred EEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
|+.-. .-.+...++..+.++|+|||.+++..
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 99443 12344678899999999999998854
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00015 Score=73.49 Aligned_cols=97 Identities=22% Similarity=0.376 Sum_probs=60.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC---CcEEE---------------------
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI---PSTLG--------------------- 266 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~---~~~~~--------------------- 266 (615)
.+..+|||||..|.++..+++. .+.|+||.+. .++.|++..- ..+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~-----LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV-----LIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHH-----HHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3467999999999999888753 6777766554 4455554310 00000
Q ss_pred --------------------Eec-CCCCCCCCCCceEEEeccc----ccccccc-hHHHHHHHHhccCCCeEEEEE
Q 007165 267 --------------------VLG-TKRLPYPSRSFELAHCSRC----RIDWLQR-DGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 267 --------------------v~d-~~~Lpfpd~sFDlV~~s~~----~l~~~~d-~~~~L~ei~RvLkPGG~Lvis 316 (615)
+.+ .+-+.+....||+|.|... -|.|-++ ..++|+.+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0011234567999998652 1333333 357999999999999999983
No 165
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.67 E-value=0.00018 Score=76.42 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCC-CCCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPY-PSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpf-pd~sFDlV~~s~~~l~ 291 (615)
..+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+.++|+..+.. ..++||+|++.--
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPP--- 249 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPP--- 249 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCC---
Confidence 368999999999999999864 5777777666554443 33344455 47899998766542 3457999996531
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. .....+.++..-++|++.++++..+
T Consensus 250 r~-G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 250 RR-GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred CC-CccHHHHHHHHHcCCCeEEEEECCc
Confidence 11 1122333344447888888887643
No 166
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.67 E-value=0.00018 Score=79.58 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=63.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC----CCCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR----LPYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~----Lpfpd~sFDlV~~s~~ 288 (615)
..+|||+|||+|.++..|+.. .|+++|+++..+..+.. .+...++ ++.+..+|+.. +++.+++||+|++.--
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 368999999999999999864 57777776655544442 2333344 57888888654 2344568999986431
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...-...++..+.+ |+|++.++++.
T Consensus 372 ---r~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 372 ---RKGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred ---CCCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 11112446666554 89999888864
No 167
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.65 E-value=0.00011 Score=82.91 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC--CCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL--PYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L--pfpd~sFDlV~~s~ 287 (615)
....+||||||.|.+...++.. +++|+++...-+..+. ..+.+.++ ++.+...|+..+ -++++++|.|+..+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3568999999999999999854 6778887765544443 34445555 455555554322 26789999999776
Q ss_pred cccccccch--------HHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRD--------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~--------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
--.|.... ..++..+.++|+|||.+.+.+
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 35564321 349999999999999999976
No 168
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.65 E-value=0.00026 Score=70.95 Aligned_cols=118 Identities=16% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC---CCCceEEEecccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP---SRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp---d~sFDlV~~s~~~l~ 291 (615)
.-++|||||=.......-... .|+.+|+.+.+ ..+.+.|....|.| ++.||+|.||. ++.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~---------------~~I~qqDFm~rplp~~~~e~FdvIs~SL-VLN 115 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQH---------------PGILQQDFMERPLPKNESEKFDVISLSL-VLN 115 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCCC---------------CCceeeccccCCCCCCcccceeEEEEEE-EEe
Confidence 368999998644332221111 34555443321 12355676666653 67999999998 799
Q ss_pred cccch---HHHHHHHHhccCCCeE-----EEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC
Q 007165 292 WLQRD---GILLLELDRLLRPGGY-----FVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD 350 (615)
Q Consensus 292 ~~~d~---~~~L~ei~RvLkPGG~-----Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~ 350 (615)
++|++ ...+..+.+.|+|+|. |+++.|..=..+.-- -.-+.+..+.+.+++..+..+.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy-~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY-MTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc-cCHHHHHHHHHhCCcEEEEEEe
Confidence 99988 4599999999999999 998887641111000 0124566788888887776543
No 169
>PLN02672 methionine S-methyltransferase
Probab=97.60 E-value=0.00028 Score=85.40 Aligned_cols=103 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc--------------C--CCcEEEEecCCCCCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER--------------G--IPSTLGVLGTKRLPY 275 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er--------------g--~~~~~~v~d~~~Lpf 275 (615)
..+|||+|||+|..+..++.. .|+++|+++..+..+..+..+.. + .++.+..+|.....-
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 357999999999999988753 57788777766655543332210 0 147888888654321
Q ss_pred C-CCCceEEEeccc-------------ccccc--------------------cc----hHHHHHHHHhccCCCeEEEEEc
Q 007165 276 P-SRSFELAHCSRC-------------RIDWL--------------------QR----DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 276 p-d~sFDlV~~s~~-------------~l~~~--------------------~d----~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ...||+|+++-- +..+- .| ..+++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 136999998521 00010 01 1457888899999999999866
Q ss_pred C
Q 007165 318 P 318 (615)
Q Consensus 318 P 318 (615)
-
T Consensus 279 G 279 (1082)
T PLN02672 279 G 279 (1082)
T ss_pred C
Confidence 3
No 170
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.56 E-value=8.4e-05 Score=78.96 Aligned_cols=98 Identities=16% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
+.++|||||||+|.++..-+++ +|.+++.+... .-..+.++..+.. +++..+.++++.+|-.++|+|++-.+.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia--~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA--DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH--HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 4578999999999887776643 78888776543 3333555666654 455666677666667899999975421
Q ss_pred c--ccccchHHHHHHHHhccCCCeEEE
Q 007165 290 I--DWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 290 l--~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
. -+-.-...+|-.=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1 111122445666689999999887
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.56 E-value=0.00025 Score=71.55 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=63.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC--cEEEE-ecCC-CCC-CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP--STLGV-LGTK-RLP-YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v-~d~~-~Lp-fpd~sFDlV~~ 285 (615)
+++|||||.+.|..+.+|+.. +++++|+.+.....+...+ ++.|+. +.... +|+. .+. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~-~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENL-AEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHH-HHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 578999999999999998743 4666666554443333222 233543 44444 3532 222 44689999994
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-. .-.+...++..+.++|||||.+++..
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 32 23445679999999999999999854
No 172
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=4.6e-05 Score=78.88 Aligned_cols=99 Identities=25% Similarity=0.228 Sum_probs=71.1
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d 295 (615)
...+||+|||.|-.+..-. .+-+.+.|++...+..++..|.. ...++|+..+|+.+.+||.+++.. ++||+..
T Consensus 46 gsv~~d~gCGngky~~~~p-----~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsia-vihhlsT 118 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVNP-----LCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIA-VIHHLST 118 (293)
T ss_pred cceeeecccCCcccCcCCC-----cceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhh-hhhhhhh
Confidence 4569999999995432211 11233345555555666555543 567789999999999999999776 6888764
Q ss_pred h---HHHHHHHHhccCCCeEEEEEcCCCC
Q 007165 296 D---GILLLELDRLLRPGGYFVYSSPEAY 321 (615)
Q Consensus 296 ~---~~~L~ei~RvLkPGG~Lvis~P~~~ 321 (615)
. ..+++|+.|+|||||...+......
T Consensus 119 ~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 119 RERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 4 4599999999999999888775543
No 173
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.52 E-value=0.00031 Score=73.17 Aligned_cols=110 Identities=22% Similarity=0.328 Sum_probs=76.3
Q ss_pred ccCCCCCCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCC---CCCC
Q 007165 209 KLNNGGNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRL---PYPS 277 (615)
Q Consensus 209 ~L~~~~~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~L---pfpd 277 (615)
.+...+.+-+||||.||.|......... .|.-.|+++..+...+ +.++++|+. +.|..+|+.+. .--+
T Consensus 129 ~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~gL~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 129 RLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERGLEDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred HHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcCCccceEEEecCCCCHhHhhccC
Confidence 3334456789999999999766555432 3444566665554444 556677775 37888885432 2123
Q ss_pred CCceEEEecccccccccch---HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 278 RSFELAHCSRCRIDWLQRD---GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~---~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
-..++++.+. +++.++|- ...+..+.+++.|||+++.+.-+.
T Consensus 208 p~P~l~iVsG-L~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 208 PAPTLAIVSG-LYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred CCCCEEEEec-chhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 4579999888 68888875 457899999999999999988543
No 174
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.46 E-value=0.00055 Score=65.98 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=78.5
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-----CCCCCceEEEeccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSRCRI 290 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-----fpd~sFDlV~~s~~~l 290 (615)
+.-|||+|.|||-++..++.+.+.--++...+.+......-.++-..+.+..+|+..+. +.+..||.|+|.--.+
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccccc
Confidence 35699999999999999998876666777777787777776777666778888876654 5678899999865444
Q ss_pred ccccch-HHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+.... -++|+++...|++||.++--.
T Consensus 129 ~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 129 NFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 443333 358999999999999999754
No 175
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.43 E-value=0.00015 Score=71.91 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=84.1
Q ss_pred ecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc
Q 007165 180 NFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER 259 (615)
Q Consensus 180 ~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er 259 (615)
-|-|-|.+|--..+++. +++.+.. -.++....++||+|+|.|..+..++.. --.+-..++|..|+...++.
T Consensus 83 G~lgrGsMFifSe~QF~----klL~i~~--p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFR----KLLVIGG--PAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccccCceEEecHHHHH----HHHhcCC--CccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhc
Confidence 34455666655655554 4444332 134556689999999999999988764 11233446777787777777
Q ss_pred CCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCC-CeEEEEEc
Q 007165 260 GIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRP-GGYFVYSS 317 (615)
Q Consensus 260 g~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkP-GG~Lvis~ 317 (615)
+.++.- ..+..-.+-+||+|.|.+ ++.-..++.++|+.++.+|+| +|..+++-
T Consensus 154 ~ynVl~----~~ew~~t~~k~dli~clN-lLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 154 NYNVLT----EIEWLQTDVKLDLILCLN-LLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred CCceee----ehhhhhcCceeehHHHHH-HHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 654322 222222234699999998 688888899999999999999 89888754
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.40 E-value=0.00037 Score=72.50 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=47.4
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
..+|||||||+|.++..|+++ +|+++|+ ++.+++.++++. .++.+..+|+..+++++-.+|.|+++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~-----d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~vv~N 112 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEI-----DRDLAPILAETFAEDNLTIIEGDALKVDLSELQPLKVVAN 112 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcceEEEe
Confidence 468999999999999999875 4555554 555555555432 46888999988888764335777754
No 177
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.001 Score=66.23 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=63.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------------CCCcEEEEecCCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------------GIPSTLGVLGTKRLPYPSR 278 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------------g~~~~~~v~d~~~Lpfpd~ 278 (615)
++.+.||+|.|+|.++..++.- .-.+.+..+++..+..++.+.+. -.+..+.++|....--+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 3456999999999887765511 11223334445555555554432 1235677888777766778
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.||.|||... .....+++...|+|||.+++-.
T Consensus 162 ~YDaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 9999998753 2336677888999999999854
No 178
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.39 E-value=0.00027 Score=78.64 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=58.5
Q ss_pred CCeEEEECCCCchHHHHHhc--------CCCccccCChhchhHHHHHHHHHcC--CCcEEEEecCCCCCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERG--IPSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--------~~V~gvdis~~Dls~a~i~~A~erg--~~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
...|||||||+|.++...++ .+|.+++-++......+ +.++..+ -.+.+..+|++.+..| ..+|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGWGDKVTVIHGDMREVELP-EKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEE
Confidence 46899999999987654432 25666665543332211 2223333 4688999999998876 48999996
Q ss_pred cccccccccc---hHHHHHHHHhccCCCeEEE
Q 007165 286 SRCRIDWLQR---DGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 286 s~~~l~~~~d---~~~~L~ei~RvLkPGG~Lv 314 (615)
-. +..+.+ ..+.|....|.|||||.++
T Consensus 265 El--LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 EL--LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ec--cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33 222221 2357888899999999887
No 179
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.39 E-value=0.00079 Score=73.31 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=62.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC-CCCCCceEEEeccccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~l~~ 292 (615)
.+|||+|||+|.++..++.. .|+++|+++..+..+. +.++..++ ++.+..+|+.... -..++||+|++.-- .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP---r 310 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP---R 310 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC---C
Confidence 57999999999999988854 5677776665554333 33333454 5788888875432 11246999986531 1
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..-...++..+. .++|++.++++..
T Consensus 311 ~G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 311 RGIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred CCCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 111234555554 4799999999863
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.37 E-value=0.00043 Score=71.44 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=47.5
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
..+|||||||+|.++..+++. .++++| +++.+++.++++ ..++.+..+|+..++++ .||.|+++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vE-----id~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~--~~d~Vv~Nl 99 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIE-----LDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP--EFNKVVSNL 99 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEE-----CCHHHHHHHHHHhccCCCEEEEEeccccCCch--hceEEEEcC
Confidence 468999999999999999875 455554 455555555543 23578888998888765 489998754
No 181
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.0019 Score=66.79 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=60.2
Q ss_pred CCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHc----CCCcEEEEe------c-CCCCCCCCCCc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALER----GIPSTLGVL------G-TKRLPYPSRSF 280 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~er----g~~~~~~v~------d-~~~Lpfpd~sF 280 (615)
...+||+|||+|..+..++.. .++++| .+++++..|.++ ++...+.+. | ....+..++.+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD-----~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~ 223 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAID-----VSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKI 223 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEe-----ccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCce
Confidence 347999999999888887743 455664 555555555443 333222222 2 23344567999
Q ss_pred eEEEeccccccc-------------------------ccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 281 ELAHCSRCRIDW-------------------------LQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 281 DlV~~s~~~l~~-------------------------~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|+++|+---+.. ......++.-+.|.|+|||.+.+..-
T Consensus 224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999985211110 00112366778899999999999764
No 182
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.30 E-value=7.7e-05 Score=63.03 Aligned_cols=89 Identities=24% Similarity=0.309 Sum_probs=57.9
Q ss_pred eeccccchhHHhhhcCC-C--cEEEEeccCCCCCchhHHhhccccc---ccccccccCCCCCCccceecccccccccccC
Q 007165 464 MDMNSNLGGFAAALKDK-D--VWVMNVAPVRMSARLKIIYDRGLIG---TVHDWCESFSTYPRTYDLLHAWKVFSEIEER 537 (615)
Q Consensus 464 mdm~a~~ggfaaal~~~-~--vwvmnvvp~~~~~tL~~iy~RGliG---~~hdwce~fstYprtyDl~Ha~~~fs~~~~~ 537 (615)
+|+.+|.|-+++.|.+. . |+.+..-+ ..+...-++.--. ..+.=-+.++--+.+||++++.++|..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeec---
Confidence 68999999999999877 3 33333222 2333333332211 2222233343335999999999999965
Q ss_pred CCChhhhhhhhcccccCCcEEEE
Q 007165 538 GCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 538 ~c~~~~i~~EmdRilRp~g~~ii 560 (615)
-+...++-||-|+|||||+++|
T Consensus 74 -~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCHHHHHHHHHHHcCcCeEEeC
Confidence 3589999999999999999987
No 183
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.30 E-value=0.00037 Score=70.36 Aligned_cols=126 Identities=17% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----C---CCcEEEEecCCCC--CCCCCCceE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----G---IPSTLGVLGTKRL--PYPSRSFEL 282 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g---~~~~~~v~d~~~L--pfpd~sFDl 282 (615)
.+.+|||.+.|-|.++...+++ .|..++.. ++.++.|.-+ + ..+.+..+|+.++ .|+|.+||+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkd-----p~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa 208 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKD-----PNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA 208 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeC-----CCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce
Confidence 4578999999999999888765 34444333 3333444322 1 1356777775443 378999999
Q ss_pred EEecccccccccch--HHHHHHHHhccCCCeEEEEEcCCC--CCCChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 283 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA--YAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 283 V~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~--~~~~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
|+----.+...... +++..|++|+|||||.++--+.++ ..+. ......+.+.+++..|.++.+
T Consensus 209 IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG---~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 209 IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG---LDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc---CChhHHHHHHHHhcCceeeee
Confidence 97532222222222 568999999999999999765333 1111 123455566677777775543
No 184
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00045 Score=67.91 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=49.6
Q ss_pred CCCeEEEECCCCchHHH--HHhc-CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGA--YLLS-HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~--~L~~-~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.+++|+|+|||||.++. .+++ ..|+++|+.+..+..+ .+.+.+.+..+.+.++|+.+.. ..||.|+++-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~-r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA-RANAEELLGDVEFVVADVSDFR---GKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHH-HHHHHhhCCceEEEEcchhhcC---CccceEEECC
Confidence 45789999999996654 4444 4789998877655333 3455555667999999988776 6689888753
No 185
>PLN02823 spermine synthase
Probab=97.26 E-value=0.0024 Score=68.67 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCC-CCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKR-LPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpfpd~sFDlV~ 284 (615)
.+++||.||+|.|..++.+++.. ....+...|+++..++.|++. ..++.+...|+.. +.-..++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45789999999999999887642 112233345666677777654 2356777777543 233457899999
Q ss_pred ecccccccc---c---chHHHHH-HHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWL---Q---RDGILLL-ELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~---~---d~~~~L~-ei~RvLkPGG~Lvis~ 317 (615)
+-. .-... + -...+++ .+.+.|+|||.+++..
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 652 11110 0 0235777 8999999999998864
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.24 E-value=0.00068 Score=69.81 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=62.0
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CCC------CCCCce
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LPY------PSRSFE 281 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf------pd~sFD 281 (615)
.++||+||+++|..+.+++.. ++++++..+.....+. +...+.|+ .+.+..+++.+ ++- .+++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 478999999999988888743 5666666543332222 22223343 46777777433 221 136899
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|+.-. .-.....++..+.++|+|||.+++..
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 999543 12333567888889999999988743
No 187
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.11 E-value=0.0024 Score=65.60 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCCCce---EEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSRSFE---LAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~sFD---lV~~s 286 (615)
+..+|||||||+|.++..|+++ .++++|+ ++.+++.++++ ..++.+..+|+..++++ .|| +|+++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~-----d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsN 101 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEI-----DPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSN 101 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEEC-----CHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEc
Confidence 3478999999999999999865 4555544 45555555443 24578888898888865 466 66643
No 188
>PRK00536 speE spermidine synthase; Provisional
Probab=97.10 E-value=0.0039 Score=64.77 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCCCCCCCCceEEE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRLPYPSRSFELAH 284 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~Lpfpd~sFDlV~ 284 (615)
+.+++||=||.|.|..++.+++.. . .+.-.|+++..++.+++. .+++.+... .. .-..++||+|+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-T--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-C--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCCEEE
Confidence 456899999999999999999763 1 333345666777777763 223333321 11 11236899999
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+-. . ....+.+.+.|.|+|||.++......+.
T Consensus 145 vDs-~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 145 CLQ-E-----PDIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred EcC-C-----CChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 543 1 3456889999999999999997755543
No 189
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.07 E-value=0.0014 Score=69.21 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=46.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc-CCCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
+..+|||||||+|.++..+++. .|+++|+++..+......++... ..++.+..+|+...+++ .||.|+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~--~~d~VvaN 108 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP--YFDVCVAN 108 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc--ccCEEEec
Confidence 3468999999999999999864 56666665544433332222111 23578888888766653 68988854
No 190
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0055 Score=64.37 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---------CCcEEEEecCCCC-CCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---------IPSTLGVLGTKRL-PYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---------~~~~~~v~d~~~L-pfpd~sFDlV~~ 285 (615)
+++||-||-|.|..++.+++..- .-.+.-.++.++.++.+++.- .++.+...|...+ .-...+||+|++
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 37999999999999999987521 112233356677778887752 2345666664332 212248999996
Q ss_pred cccccccc-c----chHHHHHHHHhccCCCeEEEEEcCCCCCCC
Q 007165 286 SRCRIDWL-Q----RDGILLLELDRLLRPGGYFVYSSPEAYAHD 324 (615)
Q Consensus 286 s~~~l~~~-~----d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~ 324 (615)
-. ..-. + ....+++.++|.|+++|.++...-..|...
T Consensus 156 D~--tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 156 DS--TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred cC--CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 43 1111 1 125699999999999999999865555444
No 191
>PRK04148 hypothetical protein; Provisional
Probab=97.05 E-value=0.0031 Score=59.08 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCeEEEECCCCch-HHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC-CCCceEEEecccccccc
Q 007165 216 IRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP-SRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCGtG~-~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~~l~~~ 293 (615)
..++||||||+|. ++..|.+. |.++.+.|+++..++.+++.+. .+.+.|..+-.+. -+.+|+|.+.+. .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~~--~~v~dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLGL--NAFVDDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhCC--eEEECcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4789999999995 88888864 4455555666677788877764 5666776554432 367999997774 3
Q ss_pred cchHHHHHHHHhccCCCeEEEEE
Q 007165 294 QRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
++....+.++.+-+ |.-+++.
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEE
Confidence 44455666666655 3445554
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.00 E-value=0.0073 Score=59.57 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=60.7
Q ss_pred eEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 218 NVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
+++|||+|.|.=+..|+ +.+++-+|-...-.+ -..+.+++.+++ +.+....++. +....+||+|++-. +
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRA--v-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARA--V-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEES--S--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeeh--h--
Confidence 79999999996665554 334555554443221 122334455765 7777777777 44568999999543 3
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.....++.-+...|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 345678888999999999998754
No 193
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.99 E-value=0.0013 Score=65.59 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=76.1
Q ss_pred cchhcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc--C--CCccccCChh
Q 007165 171 WMVVNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS--H--DIIAMSLAPN 246 (615)
Q Consensus 171 Wv~~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~--~--~V~gvdis~~ 246 (615)
...+.|-.|.++-....|..+...-...+.+++ .+..+|||+-||.|.|+..++. . .|.++|+.|.
T Consensus 67 ~~~E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v----------~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~ 136 (200)
T PF02475_consen 67 IHKENGIRFKVDLSKVYFSPRLSTERRRIANLV----------KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD 136 (200)
T ss_dssp EEEETTEEEEEETTTS---GGGHHHHHHHHTC------------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH
T ss_pred EEEeCCEEEEEccceEEEccccHHHHHHHHhcC----------CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH
Confidence 345666677776667777776554444444332 2347899999999999999886 2 5888888876
Q ss_pred chhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEE
Q 007165 247 DVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 247 Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
-.. .+.+.++..++. +....+|...+.- .+.||-|++.. ......+|..+.+++++||.+-
T Consensus 137 a~~-~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 137 AVE-YLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHH-HHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHH-HHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 543 333444444544 5667888777654 78999999654 2223358888999999999874
No 194
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.98 E-value=0.0027 Score=71.21 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC-CCCCCceEEE---
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP-YPSRSFELAH--- 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp-fpd~sFDlV~--- 284 (615)
++.+|||++||.|.=+.++++. .+++.|++..-+... .+.+...|+. +.+...|...+. ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L-~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVL-HANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHH-HHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 4578999999999877777643 455555544333221 1223333654 456666766543 2236799999
Q ss_pred -ecccc-cc--------cccc--------hHHHHHHHHhccCCCeEEEEEcC
Q 007165 285 -CSRCR-ID--------WLQR--------DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 285 -~s~~~-l~--------~~~d--------~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||... +. |.++ ..++|..+.++|||||+++.++=
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 55321 11 1111 14588999999999999998873
No 195
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=96.97 E-value=0.0047 Score=61.00 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcC-CCcEEEEeccCCCC-CchhH----Hhhccc--ccccc
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRMS-ARLKI----IYDRGL--IGTVH 509 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~~-~tL~~----iy~RGl--iG~~h 509 (615)
+.|++++-.-..+. ..+.. =..|+|+.+|.|.++.++.. .|- ..|+-++.. .-+.. +-+.|+ |=+++
T Consensus 27 ~~~~~~~~d~l~l~-~~l~~--g~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLAIA-PYLPG--GERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHHHH-hhcCC--CCeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 48888884322122 22333 24699999999998887753 232 256666543 22222 222333 44555
Q ss_pred cccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceeeccccc
Q 007165 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 589 (615)
Q Consensus 510 dwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~ 589 (615)
.-.+.+.. ..+||+|-++.. .++.+++-++-|+|||||.+++-+......++..+++.+.|......+. |
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~ 171 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIEL-T 171 (187)
T ss_pred ccHhhCCC-CCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEE-e
Confidence 55566655 679999998652 3478899999999999999999999999999999999999996432222 2
Q ss_pred cCcCCCCCceEEEEEec
Q 007165 590 IDALSSSEERVLIAKKK 606 (615)
Q Consensus 590 ~~~~~~~~e~~l~~~k~ 606 (615)
-.. -.++..+.|.+|+
T Consensus 172 ~~~-~~~~~~~~~~~~~ 187 (187)
T PRK00107 172 LPG-LDGERHLVIIRKK 187 (187)
T ss_pred cCC-CCCcEEEEEEecC
Confidence 111 2345567777774
No 196
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=96.91 E-value=0.012 Score=58.16 Aligned_cols=100 Identities=13% Similarity=-0.072 Sum_probs=58.4
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCC-CC-C-CCC-CceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKR-LP-Y-PSR-SFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f-pd~-sFDlV~~s 286 (615)
..+|||++||+|.++..++.+ .|+++|.+...+.... +.+...+. ++.+...|+.. +. + ... .||+|+.-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 367999999999999999865 4666666554433222 22222343 35777778633 22 1 122 47888753
Q ss_pred ccccccccchHHHHHHH--HhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLEL--DRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei--~RvLkPGG~Lvis~P 318 (615)
- -+.. .....++..+ ..+|+++|.+++..+
T Consensus 129 P-Py~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 P-PFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred c-CCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 1111 1123344433 347999999998654
No 197
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.84 E-value=0.00028 Score=65.86 Aligned_cols=96 Identities=24% Similarity=0.417 Sum_probs=67.5
Q ss_pred CceeeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhcccccccccccccCCCCCCccceeccccccccccc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..-.+|||..+|.|.|+..|.+.+. .|+-++.. ..+.. +-....-++=.++. --+.+||+|.+.++|..+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPP-FPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECHTHH-CHSSSEEEEEEESSGGGSS-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhh-ccccchhhHhhHHHHhhcc-
Confidence 4455899999999999999987766 44444432 33333 22222222111211 1357999999999999655
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
+...+|-+|=|+|+|||+++|.+..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4899999999999999999999765
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.80 E-value=0.0022 Score=70.13 Aligned_cols=97 Identities=14% Similarity=0.159 Sum_probs=63.4
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
.+|||++||+|.++..++.. .|+++|+++..+..+. +.++..++. ..+...|+..+....+.||+|++-- .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP--~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP--F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC--C-
Confidence 57999999999999998642 4666666554443332 222223443 4567777654322146799998532 1
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..+..++..+.+.+++||.++++..+
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 33456888878889999999998643
No 199
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0027 Score=70.34 Aligned_cols=98 Identities=22% Similarity=0.394 Sum_probs=72.7
Q ss_pred eEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
++|-+|||.-.+...+.+. .|+.+|+++..+...+...+ .......+...|...+.|++.+||+|+--. .++.+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkG-tlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKG-TLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecC-cccccc
Confidence 7999999999988888754 67777777766654444333 223456788899999999999999999876 355432
Q ss_pred -ch---------HHHHHHHHhccCCCeEEEEEc
Q 007165 295 -RD---------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 -d~---------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+. ...+.++.|+|+|||+++..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 21 236789999999999977644
No 200
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.71 E-value=0.0071 Score=59.18 Aligned_cols=101 Identities=22% Similarity=0.249 Sum_probs=61.0
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCc-----------cccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLL--SHDII-----------AMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~--~~~V~-----------gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lpfpd~s 279 (615)
+...|||--||+|++....+ ...+. |.|+++..+..+. +.+...+. .+.+.+.|+..+++.+++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcccCCceEEEecchhhcccccCC
Confidence 34679999999998875543 33334 6666666554443 22333344 367888899999988899
Q ss_pred ceEEEeccccccc-cc---ch----HHHHHHHHhccCCCeEEEEEc
Q 007165 280 FELAHCSRCRIDW-LQ---RD----GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 280 FDlV~~s~~~l~~-~~---d~----~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|.|++.-- ..- .. +. ..++.++.++|++...++++.
T Consensus 107 ~d~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 107 VDAIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp SCEEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred CCEEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 999997521 110 11 11 347899999999955555543
No 201
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.56 E-value=0.014 Score=59.09 Aligned_cols=110 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh-----cCCCccccCChhchhHHHHHHHHHcCC--CcE
Q 007165 192 ADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGI--PST 264 (615)
Q Consensus 192 a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~-----~~~V~gvdis~~Dls~a~i~~A~erg~--~~~ 264 (615)
..++.+.+.+++. ++++||||.=||..+..++ +.+|+++|+........ .++.+..|. .+.
T Consensus 61 ~g~fl~~li~~~~-----------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~ 128 (237)
T KOG1663|consen 61 KGQFLQMLIRLLN-----------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKIT 128 (237)
T ss_pred HHHHHHHHHHHhC-----------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceee
Confidence 3455666655554 4789999977775554444 23788888766554433 244444454 356
Q ss_pred EEEecCC-CCC-----CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 265 LGVLGTK-RLP-----YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 265 ~~v~d~~-~Lp-----fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.++.+. .++ .+.++||+|+ +=+|-.+....+.++.++||+||.+++.-
T Consensus 129 ~i~g~a~esLd~l~~~~~~~tfDfaF----vDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 129 FIEGPALESLDELLADGESGTFDFAF----VDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred eeecchhhhHHHHHhcCCCCceeEEE----EccchHHHHHHHHHHHhhcccccEEEEec
Confidence 6666532 221 3568999998 33444555678999999999999999843
No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.55 E-value=0.013 Score=62.71 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=61.6
Q ss_pred CeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc-----CCCcEE--EEecCCC----CCC--CCCCc
Q 007165 217 RNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-----GIPSTL--GVLGTKR----LPY--PSRSF 280 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er-----g~~~~~--~v~d~~~----Lpf--pd~sF 280 (615)
..++|+|||.|.=+..|+++ .-..+.+.+.|+|...++.+.++ -..+.+ ..+|..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 47999999999766655532 11123345555555555554433 122333 4555322 221 12346
Q ss_pred eEEEecccccccccchH--HHHHHHHh-ccCCCeEEEEEc
Q 007165 281 ELAHCSRCRIDWLQRDG--ILLLELDR-LLRPGGYFVYSS 317 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~--~~L~ei~R-vLkPGG~Lvis~ 317 (615)
.+++...+.+..++..+ .+|+++++ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 77776665677665553 58999999 999999999865
No 203
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=96.52 E-value=0.0055 Score=63.03 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC-CCCCC-CceEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL-PYPSR-SFELA 283 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L-pfpd~-sFDlV 283 (615)
++++||=||-|.|..++.+.+.. ....++..++++..++.|++. ..++.+...|.... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999998652 011233335556666666543 24677888885332 11223 89999
Q ss_pred Eecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 284 HCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 284 ~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+.-.. -...+. ...+++.+.+.|+|||.+++.....
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 96431 111111 2579999999999999999976444
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=96.48 E-value=0.0033 Score=60.98 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=51.4
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEec---------CCC-CCCCCCC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG---------TKR-LPYPSRS 279 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d---------~~~-Lpfpd~s 279 (615)
...+|||+||++|.|+..+.++ .|+++|+.+.+.. ..+....+| ... ++-..+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-----------~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-----------QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-----------cceeeeecccchhhHHHhhhhhccccccC
Confidence 4588999999999999999865 4677877765211 011111111 111 1111268
Q ss_pred ceEEEeccccccccc----ch-------HHHHHHHHhccCCCeEEEEEcC
Q 007165 280 FELAHCSRCRIDWLQ----RD-------GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 280 FDlV~~s~~~l~~~~----d~-------~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||+|+|-. +..... +. ...+.-+...|+|||.+++-.-
T Consensus 92 ~dlv~~D~-~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 92 FDLVLSDM-APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp ESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cceecccc-ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 99999754 122211 11 2244555678999999988663
No 205
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.47 E-value=0.0084 Score=64.06 Aligned_cols=94 Identities=17% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEec-CCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG-TKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d-~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
....+|+|.|.|..+..+... +|-++++....+- +.|......+...-+| .++.|- -|+|++-.+ +|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~----~~a~~~~~gV~~v~gdmfq~~P~----~daI~mkWi-Lhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVL----AAAPYLAPGVEHVAGDMFQDTPK----GDAIWMKWI-LHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHH----hhhhhhcCCcceecccccccCCC----cCeEEEEee-ccc
Confidence 578999999999999998863 3445555433332 2222222335555566 344442 359999996 555
Q ss_pred ccch--HHHHHHHHhccCCCeEEEEEcC
Q 007165 293 LQRD--GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 293 ~~d~--~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..|. .++|+++...|+|||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 5444 5799999999999999999774
No 206
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.0014 Score=62.95 Aligned_cols=135 Identities=16% Similarity=0.283 Sum_probs=81.0
Q ss_pred CCeEEEECCCCchHHHHHhcCCCcccc---CChhchhHHHHHHHHHcCCCcEE-----EEec--CCCCCCCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMS---LAPNDVHENQIQFALERGIPSTL-----GVLG--TKRLPYPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvd---is~~Dls~a~i~~A~erg~~~~~-----~v~d--~~~Lpfpd~sFDlV~~ 285 (615)
+++||++|.|.-.++..|....+...+ ..+.+.+...++....++--..+ ...+ ..+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 478999999976666665533222111 13344444444444433310001 0011 1112234468999999
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEeeC-ceEEEecc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKKD-QTVIWAKP 358 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~~-~~aiwqKP 358 (615)
+.|+ -+-+.-..++..+.++|+|.|.-++..|-. . +..+++.+.+....+.+....+ +.+|||+-
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR---g----~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR---G----QSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc---c----chHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 9984 344445678999999999999988887743 1 1245566777777787776665 56788764
No 207
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.35 E-value=0.0027 Score=63.37 Aligned_cols=113 Identities=18% Similarity=0.295 Sum_probs=71.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhHHh----hcccc---cccc-cccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIY----DRGLI---GTVH-DWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~iy----~RGli---G~~h-dwce~fstYprtyDl~Ha~~~ 530 (615)
+.|+|..+|.|+++..+... +- -+|+-++ +++.+...- +.|+- -+.+ |..+. .+|.+||+|++.++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPH--LQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHH
Confidence 36999999999998888643 21 1333333 234443332 34552 2222 22121 34789999999988
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------------HHHHHHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------------IINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------------~~~~~~~~~~~~~w~~ 581 (615)
|..+. +...++-++.|+|+|||++++.|-.. ...++.+++..-.++.
T Consensus 77 l~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 139 (224)
T smart00828 77 IHHIK----DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRV 139 (224)
T ss_pred HHhCC----CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeE
Confidence 87543 36889999999999999999976421 1345556666666654
No 208
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.34 E-value=0.0046 Score=63.98 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=36.0
Q ss_pred EEEecCCCC-CCCC-----CCceEEEecccccccc-cch---HHHHHHHHhccCCCeEEEEEc
Q 007165 265 LGVLGTKRL-PYPS-----RSFELAHCSRCRIDWL-QRD---GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 265 ~~v~d~~~L-pfpd-----~sFDlV~~s~~~l~~~-~d~---~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+...|.... |+.. .+||+|++++| ++.. ++. ..+++++.++|||||+|++..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fc-LE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFC-LESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESS-HHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHH-HHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 455665443 3332 35999999997 5543 344 458999999999999999875
No 209
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.31 E-value=0.027 Score=58.85 Aligned_cols=121 Identities=20% Similarity=0.080 Sum_probs=62.4
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---CCCcEE--EEec--CCCCCCCCCCceEEEec
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---GIPSTL--GVLG--TKRLPYPSRSFELAHCS 286 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---g~~~~~--~v~d--~~~Lpfpd~sFDlV~~s 286 (615)
-.+++|||+|||+|...-...+.--...++...|.++.+.++++.. ...... .... ....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 3457899999999965544433200122333445566666655432 111110 0011 1122332 33999999
Q ss_pred ccccccccch--HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcce
Q 007165 287 RCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCW 343 (615)
Q Consensus 287 ~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W 343 (615)
+. |.-+++. ..+++.+.+.+.+ +|+|..|.. ....+....+++.+....+
T Consensus 110 ~~-L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt----~~Gf~~i~~aR~~l~~~~~ 161 (274)
T PF09243_consen 110 YV-LNELPSAARAELVRSLWNKTAP--VLVLVEPGT----PAGFRRIAEARDQLLEKGA 161 (274)
T ss_pred hh-hhcCCchHHHHHHHHHHHhccC--cEEEEcCCC----hHHHHHHHHHHHHHhhCCC
Confidence 95 5555552 2356666666655 999988765 2233333444444433333
No 210
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.30 E-value=0.0072 Score=65.42 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=56.6
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC--------C---C-----CC
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP--------Y---P-----SR 278 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp--------f---p-----d~ 278 (615)
+|||++||+|.++..|+.. .|+++|+++..+..+. +.+...++ ++.+..+|+.++- + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 5999999999999988864 5777776666554443 33333455 5778888865421 1 0 12
Q ss_pred CceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 279 SFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.||+|+.--- -..-...++..+ ++|++.++++..
T Consensus 279 ~~d~v~lDPP---R~G~~~~~l~~l---~~~~~ivYvsC~ 312 (353)
T TIGR02143 279 NCSTIFVDPP---RAGLDPDTCKLV---QAYERILYISCN 312 (353)
T ss_pred CCCEEEECCC---CCCCcHHHHHHH---HcCCcEEEEEcC
Confidence 3798874320 001112344444 348899998763
No 211
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.047 Score=54.73 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=61.2
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFD 281 (615)
++.+|+|+|+-.|+++..+++. .|+++|+.+.++.+ .+.+.++|...-+ +....+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~-----------~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP-----------GVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC-----------CceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 3578999999999999988754 37888888876532 2566777754432 3345579
Q ss_pred EEEeccc---ccccccch-------HHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRC---RIDWLQRD-------GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~---~l~~~~d~-------~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|++-.+ .-++..|. ..++.-+..+|+|||.|++-.
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 9985321 11111111 235566678999999999865
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.27 E-value=0.04 Score=59.24 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
.++.++|||||++|.|+..|.++ .|+++|..+.+. . ......+.....|..+...+.+.+|.++|-.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDm---- 278 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------S-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDM---- 278 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------h-hhCCCCEEEEeccCcccCCCCCCCCEEEEec----
Confidence 35678999999999999999976 466666443221 1 1223456777766544432367899999754
Q ss_pred cccchHHHHHHHHhccCCC--eEEEEEcC
Q 007165 292 WLQRDGILLLELDRLLRPG--GYFVYSSP 318 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPG--G~Lvis~P 318 (615)
...|.+++.-+.+.|..| ..+|+...
T Consensus 279 -ve~P~rva~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 279 -VEKPARVAELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred -ccCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence 245677777788888766 46666553
No 213
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.23 E-value=0.0098 Score=60.66 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=64.5
Q ss_pred ccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc-ccccccccccCCCCCCccceeccccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-IGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
+......+|+|+.+|-|.++..|..... .|+=+|- ++-|...-+++- +...+.-.|.++-...+||+|-++..+.
T Consensus 38 l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~ 114 (251)
T PRK10258 38 LPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQ 114 (251)
T ss_pred cCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhh
Confidence 3444567899999999999988865421 3333332 344444444431 1222222344444457899998776554
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
. . -+...++-||-|+|+|||.+++..
T Consensus 115 ~-~---~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 115 W-C---GNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred h-c---CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 1 1 257899999999999999999874
No 214
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.20 E-value=0.0095 Score=64.69 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=58.3
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCC-C-CC--------------C
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRL-P-YP--------------S 277 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~L-p-fp--------------d 277 (615)
.+|||++||+|.++..|+.. .|+++|+++..+..+. +.+...++ ++.+..+|+... + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988854 6777777666554443 33333455 577888886542 1 10 1
Q ss_pred CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
..||+|+.--- ...-...++..+. +|++.++++..
T Consensus 287 ~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred CCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeC
Confidence 25899985321 1111133444444 37888888763
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.19 E-value=0.01 Score=62.63 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc-----------CCCccccCChhchhHHHHHHHHHcCC
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS-----------HDIIAMSLAPNDVHENQIQFALERGI 261 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~-----------~~V~gvdis~~Dls~a~i~~A~erg~ 261 (615)
....+.+.+++.. ....+|||-+||+|.|...+.. ..+.|.|+.+....-+.+.... ++.
T Consensus 32 ~~i~~l~~~~~~~--------~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~ 102 (311)
T PF02384_consen 32 REIVDLMVKLLNP--------KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGI 102 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTH
T ss_pred HHHHHHHHhhhhc--------cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcc
Confidence 3455566666642 2346799999999998777654 2455555544433333322222 232
Q ss_pred C---cEEEEecCCCCCCC--CCCceEEEeccc--ccccc------------------cchHHHHHHHHhccCCCeEEEEE
Q 007165 262 P---STLGVLGTKRLPYP--SRSFELAHCSRC--RIDWL------------------QRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 262 ~---~~~~v~d~~~Lpfp--d~sFDlV~~s~~--~l~~~------------------~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
. ..+...|....+.. .+.||+|+++-- ...|. .....++..+.+.|++||++++.
T Consensus 103 ~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 103 DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2 23666665444332 478999998521 11010 00124788899999999999998
Q ss_pred cCCC
Q 007165 317 SPEA 320 (615)
Q Consensus 317 ~P~~ 320 (615)
.|..
T Consensus 183 lp~~ 186 (311)
T PF02384_consen 183 LPNG 186 (311)
T ss_dssp EEHH
T ss_pred ecch
Confidence 8764
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.02 Score=63.59 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=68.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCCCC---CCCceEEEeccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLPYP---SRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lpfp---d~sFDlV~~s~~ 288 (615)
+..++||+=||.|.|+..|+++ +|+|+++++..+..++ +.|+..++ ++.|..++++++... ...||.|+.--
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP- 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP- 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC-
Confidence 3468999999999999999965 8999999998887666 44444554 588888888776533 35789998421
Q ss_pred ccccccch---HHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRD---GILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~---~~~L~ei~RvLkPGG~Lvis~P 318 (615)
|.. ..+++.+. -++|-..+++|..
T Consensus 371 -----PR~G~~~~~lk~l~-~~~p~~IvYVSCN 397 (432)
T COG2265 371 -----PRAGADREVLKQLA-KLKPKRIVYVSCN 397 (432)
T ss_pred -----CCCCCCHHHHHHHH-hcCCCcEEEEeCC
Confidence 111 23444444 4567788888863
No 217
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.15 E-value=0.01 Score=64.97 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=69.0
Q ss_pred CCeEEEECCCCchHHHHHhc--C-CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCCC-C---CCCCCceEEEe
Q 007165 216 IRNVLDVGCGVASFGAYLLS--H-DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKRL-P---YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~--~-~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~L-p---fpd~sFDlV~~ 285 (615)
+++|||+=|=||.|+.+.+. + .|+++|++..-+.-+..++. -.|+ ++.+.++|+..+ . -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 57899999999999988774 3 67777666655544442222 2343 367888885332 2 12348999997
Q ss_pred cccc--------cccccchHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 286 SRCR--------IDWLQRDGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 286 s~~~--------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
---. ..-..+...++..+.++|+|||.+++++-..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 3211 1112344568899999999999999987443
No 218
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.034 Score=54.58 Aligned_cols=101 Identities=18% Similarity=0.257 Sum_probs=65.8
Q ss_pred CCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccc--
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC-- 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~-- 288 (615)
...+||||||+|..+..|++. -..+.|+.+... ++..+-|+..+..+..++.|...-- ..++.|+++.+.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~-~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL-EATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHH-HHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcC
Confidence 467999999999988888754 234667777543 3444666666666677777743221 2278888875421
Q ss_pred ------------ccccc--cc----hHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 ------------RIDWL--QR----DGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ------------~l~~~--~d----~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
...|. .+ .++++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 11121 11 23577888899999999998763
No 219
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.09 E-value=0.015 Score=61.66 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~Lpfpd~sFDlV~~ 285 (615)
..+.|||+|||+|.++...+.+ .|.+++.+. |.+.|++. ++ .+.++.+-.++..+| ++.|++++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEe
Confidence 3578999999999777665533 666765432 33444432 23 234444556777666 78999996
Q ss_pred cccccccccchHH---HHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGI---LLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~---~L~ei~RvLkPGG~Lvis~ 317 (615)
-- ..++---++ ....++|.|+|.|..+=+.
T Consensus 250 EP--MG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 250 EP--MGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cc--chhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 44 333222222 3345669999999988554
No 220
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.06 E-value=0.072 Score=53.85 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCeEEEECCCCchHHHHHh----cCCCccccCChhchhHHHHH-HHHHcCCC-cEEEEecCCCCCCCCCC-ceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLL----SHDIIAMSLAPNDVHENQIQ-FALERGIP-STLGVLGTKRLPYPSRS-FELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~----~~~V~gvdis~~Dls~a~i~-~A~erg~~-~~~~v~d~~~Lpfpd~s-FDlV~~s~~ 288 (615)
..+++|||+|.|.=+..|+ +.+++-+|-... ..+.++ .+.+.+++ +.+...-++.+.-. .. ||+|.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~~~RaE~~~~~-~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIVHGRAEEFGQE-KKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEehhhHhhcccc-cccCcEEEeeh-
Confidence 4789999999997666655 223444433222 112222 23455776 88888778877632 23 99998543
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
+ .+...++.-...+||+||.++..- .....+.+...+.......+.+.
T Consensus 144 -v---a~L~~l~e~~~pllk~~g~~~~~k------~~~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 144 -V---ASLNVLLELCLPLLKVGGGFLAYK------GLAGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred -c---cchHHHHHHHHHhcccCCcchhhh------HHhhhhhHHHHHHHHHhhcCcEE
Confidence 2 345667777889999999876422 11122334455555555554443
No 221
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.89 E-value=0.11 Score=56.18 Aligned_cols=97 Identities=23% Similarity=0.256 Sum_probs=58.8
Q ss_pred eeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHH----hhcccccccccccccCCCCCCccceecccccccc-c
Q 007165 462 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKII----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE-I 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~i----y~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~-~ 534 (615)
.|+|+.+|.|.++++|.+. |.- .|+-+|.. .-|... -..|+-+..+ +...++.-+.+||+|-.+--|-. +
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988754 311 12223321 111111 1123333332 33344545789999999877642 1
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
....-..+.++-++-|.|+|||.++|=
T Consensus 276 ~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 111123678899999999999999774
No 222
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.86 E-value=0.037 Score=62.94 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=63.2
Q ss_pred CCeEEEECCCCchHHHHHhcCC-------CccccCChhchhHHHHHHHHHc----C-CCcEEEEecCCCC-----CCCCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSHD-------IIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRL-----PYPSR 278 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~-------V~gvdis~~Dls~a~i~~A~er----g-~~~~~~v~d~~~L-----pfpd~ 278 (615)
..+|||.|||+|.|...++... ....++.+.|+++..+..++.. + ....+...|.... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4689999999999888776420 1124556666666666665543 1 2233333332111 11125
Q ss_pred CceEEEecccc--ccccc------------------------------------------c-hHHHH-HHHHhccCCCeE
Q 007165 279 SFELAHCSRCR--IDWLQ------------------------------------------R-DGILL-LELDRLLRPGGY 312 (615)
Q Consensus 279 sFDlV~~s~~~--l~~~~------------------------------------------d-~~~~L-~ei~RvLkPGG~ 312 (615)
.||+|+++--- ++... + ...++ ..+.++|+|||+
T Consensus 112 ~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~ 191 (524)
T TIGR02987 112 LFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNGY 191 (524)
T ss_pred cccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCCE
Confidence 79999985211 11100 0 01134 457899999999
Q ss_pred EEEEcCCCCCCC
Q 007165 313 FVYSSPEAYAHD 324 (615)
Q Consensus 313 Lvis~P~~~~~~ 324 (615)
+.+..|..+...
T Consensus 192 ~~~I~P~s~l~~ 203 (524)
T TIGR02987 192 VSIISPASWLGD 203 (524)
T ss_pred EEEEEChHHhcC
Confidence 999999865543
No 223
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.84 E-value=0.025 Score=58.66 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEEecCCCCCCCCC-CceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGVLGTKRLPYPSR-SFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v~d~~~Lpfpd~-sFDlV~~s 286 (615)
..+|||||+|.|.++..|+++ .|+++++.+ .+++.-+++ ..+..+..+|+...++++- .++.|+++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~-----~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDR-----RLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCH-----HHHHHHHHhcccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 578999999999999999975 677775544 444444433 3467888899988888754 68888854
No 224
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.73 E-value=0.1 Score=55.24 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=53.9
Q ss_pred CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCCCCCCCh------h-HH-HHHHHHHHHHhhcceEEEEee
Q 007165 278 RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDP------E-NR-RIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~------e-~~-~~w~~l~~La~~l~W~l~~~~ 349 (615)
++||+|+..+ .+.-..+.-.++..+..+|+|||+++=..|-.|+... + .. -..+.+..+++..+|++..++
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 4699998776 4665566677999999999999999988877655222 1 11 246788899999999988766
No 225
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.25 Score=50.61 Aligned_cols=123 Identities=18% Similarity=0.286 Sum_probs=81.1
Q ss_pred CCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCC---CCCCCceEEEec
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP---YPSRSFELAHCS 286 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lp---fpd~sFDlV~~s 286 (615)
.+.+.+||||+.||.|+..++++ .|.++|+.-..++... .....+. +...++..+. +. +..|+++|-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL-----R~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~D 151 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL-----RNDPRVIVLERTNVRYLTPEDFT-EKPDLIVID 151 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH-----hcCCcEEEEecCChhhCCHHHcc-cCCCeEEEE
Confidence 35688999999999999999865 6888877666655443 2233332 2333343332 22 367899875
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCCCCC------------CChhH-HHHHHHHHHHHhhcceEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPEAYA------------HDPEN-RRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~------------~~~e~-~~~w~~l~~La~~l~W~l~ 346 (615)
-+ ++ ....+|-.+..+|+|||.++.-.-+.+. ++++. ...-..+.+++....|.+.
T Consensus 152 vS---FI-SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 152 VS---FI-SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred ee---hh-hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 43 22 3566899999999999999887655432 22322 2456777888888888665
No 226
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.72 E-value=0.018 Score=57.74 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=58.9
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHh---cC-CCccccCChhchhHH--HHHHHHH--
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLL---SH-DIIAMSLAPNDVHEN--QIQFALE-- 258 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~---~~-~V~gvdis~~Dls~a--~i~~A~e-- 258 (615)
.|.+-.......+.+.+.+ .+....+|||||.|......+ +. ...|+++.+.-...+ +.+..++
T Consensus 22 ~YGEi~~~~~~~il~~~~l--------~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~ 93 (205)
T PF08123_consen 22 TYGEISPEFVSKILDELNL--------TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRM 93 (205)
T ss_dssp CGGGCHHHHHHHHHHHTT----------TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCHHHHHHHHHHhCC--------CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHH
Confidence 3444444445555555543 234789999999997654443 22 367887766532222 1111111
Q ss_pred --cCC---CcEEEEecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhccCCCeEEEE
Q 007165 259 --RGI---PSTLGVLGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 259 --rg~---~~~~~v~d~~~Lpfpd---~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
.|. ++.+..+|..+.++.. ..-|+|++++. -+.++....|.++..-||+|-+++-
T Consensus 94 ~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~--~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 94 KHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNT--CFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--T--TT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HHhhcccccceeeccCccccHhHhhhhcCCCEEEEecc--ccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 122 3455555544332111 34699998873 3446666677888889999988764
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.70 E-value=0.062 Score=54.12 Aligned_cols=113 Identities=18% Similarity=0.216 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCC----CcEEEEe
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGI----PSTLGVL 268 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~ 268 (615)
..+-...++.+. .++++||.||-|.|.....+.++...-.-| .+.++...+.-++.|. ++.+..+
T Consensus 88 tpiMha~A~ai~---------tkggrvLnVGFGMgIidT~iQe~~p~~H~I--iE~hp~V~krmr~~gw~ek~nViil~g 156 (271)
T KOG1709|consen 88 TPIMHALAEAIS---------TKGGRVLNVGFGMGIIDTFIQEAPPDEHWI--IEAHPDVLKRMRDWGWREKENVIILEG 156 (271)
T ss_pred hHHHHHHHHHHh---------hCCceEEEeccchHHHHHHHhhcCCcceEE--EecCHHHHHHHHhcccccccceEEEec
Confidence 345555555554 346789999999998888887663221111 1345555555555543 2333332
Q ss_pred cCCC-C-CCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 269 GTKR-L-PYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 269 d~~~-L-pfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
--++ + .++|+.||-|+--- .-++-.|...+.+.+.|+|||+|+|-+..
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDT-y~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDT-YSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chHhhhccccccCcceeEeec-hhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 2111 2 25789999998443 23666788889999999999999998754
No 228
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.62 E-value=0.026 Score=59.49 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCC---CcEEEEecCCC-CC-C-CCCCceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGI---PSTLGVLGTKR-LP-Y-PSRSFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~---~~~~~v~d~~~-Lp-f-pd~sFDlV~~s 286 (615)
.++|||+=|=||.|+.+.+.. .|+.+|.+...+..+..+.+. .++ .+.+...|+.. +. . ..++||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 478999999999999886543 567776666555544433332 243 46777777532 11 1 24689999983
Q ss_pred cc-----ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 287 RC-----RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 287 ~~-----~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
-- ...-..+...++..+.++|+|||.+++++-.
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 21 1111234466889999999999999877643
No 229
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.0094 Score=56.44 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=50.9
Q ss_pred CCCeEEEECCCCchHHHHH--h-cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGVASFGAYL--L-SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L--~-~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.++.++|+|||.|-++... . ...|.|+|+.+..+.... +.|.+..+++.+.++|...+-+..+.||.++.+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 3577999999999766333 2 336788877665543322 4445556777888999888888889999998654
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.57 E-value=0.024 Score=61.92 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=63.8
Q ss_pred CeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCCCC-CCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKRLP-YPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~Lp-fpd~sFDlV~~s~~~ 289 (615)
-+|||+.||+|..+..++.. .|++.|+++.-+.... +.++..+. ++.+...|+..+- .....||+|..--
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-- 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-- 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence 47999999999999988753 4666766654443222 22233333 3566667754432 1235799998432
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+ ..+..++..+.+.+++||.+.++..
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2 3445799999999999999999843
No 231
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.0037 Score=59.61 Aligned_cols=50 Identities=24% Similarity=0.389 Sum_probs=42.5
Q ss_pred CCCCCCCCCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 270 TKRLPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 270 ~~~Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
....+|.+++.|+|.|.+ +++|+... ..++++++|.|||||+|-+++|..
T Consensus 38 s~e~~F~dns~d~iyaeH-vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 38 SNESMFEDNSVDAIYAEH-VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hhhccCCCcchHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 456689999999999998 68887543 468999999999999999999874
No 232
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.1 Score=54.21 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHc----C--CCcE
Q 007165 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALER----G--IPST 264 (615)
Q Consensus 196 ~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~er----g--~~~~ 264 (615)
+..+..+|+.. ++.+||+-|.|+|+++.+++.+ ++...| .++...+.|++. + -++.
T Consensus 94 ia~I~~~L~i~--------PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfe-----fH~~Ra~ka~eeFr~hgi~~~vt 160 (314)
T KOG2915|consen 94 IAMILSMLEIR--------PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFE-----FHETRAEKALEEFREHGIGDNVT 160 (314)
T ss_pred HHHHHHHhcCC--------CCCEEEecCCCcchHHHHHHHhhCcCcceEEEE-----ecHHHHHHHHHHHHHhCCCcceE
Confidence 45566777643 3578999999999999998864 444554 455555555443 4 3567
Q ss_pred EEEecCCCCCCC--CCCceEEEecccccccccchHHHHHHHHhccCCCe-EEEEEcCCC
Q 007165 265 LGVLGTKRLPYP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGG-YFVYSSPEA 320 (615)
Q Consensus 265 ~~v~d~~~Lpfp--d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG-~Lvis~P~~ 320 (615)
+..-|.....|. +..+|+|+.- ++.|..++--+..+||-+| +|+-.+|..
T Consensus 161 ~~hrDVc~~GF~~ks~~aDaVFLD------lPaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 161 VTHRDVCGSGFLIKSLKADAVFLD------LPAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred EEEeecccCCccccccccceEEEc------CCChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 777777666553 5789999732 3556667777788999876 666555543
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.42 E-value=0.073 Score=52.89 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCCchHHHH--HhcC-CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 214 GNIRNVLDVGCGVASFGAY--LLSH-DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~--L~~~-~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
-++++|||+|+|+|..+.. ++.+ .|+..|+.+.-. .+..-.+...|..+.+...|.-. .+..||+++.+..++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy 153 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-QAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFY 153 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-HHhhcchhhccceeEEeeccccC---CCcceeEEEeeceec
Confidence 3568999999999965444 3333 677777765322 22223344556666666655433 557899999988433
Q ss_pred ccccchHHHHHHHHhccCC-CeEEEEEcCC
Q 007165 291 DWLQRDGILLLELDRLLRP-GGYFVYSSPE 319 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkP-GG~Lvis~P~ 319 (615)
.+ +.-.+++. +.+.|+. |-.+++-+|.
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 32 33345666 5555554 4445554554
No 234
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.40 E-value=0.037 Score=57.32 Aligned_cols=96 Identities=21% Similarity=0.232 Sum_probs=65.4
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhhcc-------c--ccccccccccCCCCC-Cccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYDRG-------L--IGTVHDWCESFSTYP-RTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~RG-------l--iG~~hdwce~fstYp-rtyDl~Ha 527 (615)
..|+|..+|-|.++..|... +-+ +|+=+|- ++-|.+.-+|. . |-..+.-.|.++ +| .+||++.+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 47999999999999888643 222 4555553 35565554442 1 122333345554 34 68999998
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+..+..+. +...++-||-|+|||||.++|-|-
T Consensus 152 ~~~l~~~~----d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNVV----DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccCC----CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 87776432 478899999999999999988763
No 235
>PLN02244 tocopherol O-methyltransferase
Probab=95.40 E-value=0.013 Score=63.13 Aligned_cols=96 Identities=21% Similarity=0.305 Sum_probs=59.9
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhH----Hhhccccc---c-cccccc-cCCCCCCccceeccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGLIG---T-VHDWCE-SFSTYPRTYDLLHAW 528 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~----iy~RGliG---~-~hdwce-~fstYprtyDl~Ha~ 528 (615)
.-..|+|+.+|.|+++..|...- -.+|+=++- ++.+.. +-++|+-. . -.|..+ +|. +.+||+|.+.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~s~ 193 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVWSM 193 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEEEC
Confidence 44679999999999998887541 113332331 222221 22334421 1 123322 232 3799999987
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..+..+. +...+|-||-|+|||||.++|-|
T Consensus 194 ~~~~h~~----d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMP----DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7665443 35789999999999999999854
No 236
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.29 E-value=0.031 Score=55.02 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred cCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHH
Q 007165 175 NGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHEN 251 (615)
Q Consensus 175 ~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a 251 (615)
.|-.+..|.+ ....+..+...+.+-.++... . -.+.++||+-||+|.++...+++ .|+.+|.+..-.. .
T Consensus 9 kgr~l~~p~~-~~~RPT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~ 80 (183)
T PF03602_consen 9 KGRKLKTPKG-DNTRPTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-I 80 (183)
T ss_dssp TT-EEE-TT---TS-SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-H
T ss_pred CCCEecCCCC-CCcCCCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-H
Confidence 3445555543 334445556666666666532 0 13478999999999999988765 4555555443222 1
Q ss_pred HHHHHHHcCCC--cEEEEecCC-CCC---CCCCCceEEEecccccccccc--hHHHHHHHH--hccCCCeEEEEEcC
Q 007165 252 QIQFALERGIP--STLGVLGTK-RLP---YPSRSFELAHCSRCRIDWLQR--DGILLLELD--RLLRPGGYFVYSSP 318 (615)
Q Consensus 252 ~i~~A~erg~~--~~~~v~d~~-~Lp---fpd~sFDlV~~s~~~l~~~~d--~~~~L~ei~--RvLkPGG~Lvis~P 318 (615)
..+.+...+.. +.+...|+. .++ .....||+|++-- +|... ...++..+. .+|+++|.+++...
T Consensus 81 i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 81 IKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 11222223433 566666632 221 2468899999643 23222 255677766 79999999999763
No 237
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=95.29 E-value=0.022 Score=55.82 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=70.6
Q ss_pred eeeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHH----hhccc--ccccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKII----YDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~i----y~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
.+|+|+.+|.|.++..|.. .+. ..|+=++. ++.+..+ -..|+ |-+.+.=.+.+. ...+||+|-+++ +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 5899999999977665431 121 23444443 2333222 22343 222322222232 357999998766 2
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhc-Cccce
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL-KWDGW 582 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~-~w~~~ 582 (615)
..+.+++-++.|+|+|||.+++.+......++..+...+ .|..+
T Consensus 119 ------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 119 ------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred ------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCce
Confidence 247788888999999999999999888888888887663 35553
No 238
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.28 E-value=0.11 Score=48.76 Aligned_cols=100 Identities=16% Similarity=0.113 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCCchHHHHHhc-----C---CCccccCChhchhHHHHHHHHHcCC----CcEEEEecCCCCCCCCCCce
Q 007165 214 GNIRNVLDVGCGVASFGAYLLS-----H---DIIAMSLAPNDVHENQIQFALERGI----PSTLGVLGTKRLPYPSRSFE 281 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~-----~---~V~gvdis~~Dls~a~i~~A~erg~----~~~~~v~d~~~Lpfpd~sFD 281 (615)
.+..+|+|+|||.|.++..|+. . .|+++|..+.....++ +.+++.+. ...+...+....+ .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQ-KRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHH-HHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 4567899999999999998887 3 5666766554432222 33333331 1222332222211 145667
Q ss_pred EEEecccccccccchHH-HHHHHHhccCCCeEEEEEcCCCCC
Q 007165 282 LAHCSRCRIDWLQRDGI-LLLELDRLLRPGGYFVYSSPEAYA 322 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~-~L~ei~RvLkPGG~Lvis~P~~~~ 322 (615)
+++ ++|-..+... +|+-+.+ |+-.+++..|-.|+
T Consensus 102 ~~v----gLHaCG~Ls~~~l~~~~~---~~~~~l~~vpCCyh 136 (141)
T PF13679_consen 102 ILV----GLHACGDLSDRALRLFIR---PNARFLVLVPCCYH 136 (141)
T ss_pred EEE----EeecccchHHHHHHHHHH---cCCCEEEEcCCccc
Confidence 776 4666666643 4444444 77888888887764
No 239
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.18 E-value=0.031 Score=54.16 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=74.2
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh----hccccccc--ccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY----DRGLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy----~RGliG~~--hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
++|+|+.+|.|.++.++..... .|+=++- ++.+...- ..|+-..+ -|+.+. .+.+||++-++--|-.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876532 4444442 33333221 12221111 244443 3569999988765532
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCcEEEEEcChhH-HHHHHHHHhhcCccce
Q 007165 534 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGW 582 (615)
Q Consensus 534 ~~~-----------------~~c~~~~i~~EmdRilRp~g~~iird~~~~-~~~~~~~~~~~~w~~~ 582 (615)
... ...-+.+++-|+.|+|+|||.+++-+.... ..++.+.++...++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 210 112367889999999999999999876655 6777777777778763
No 240
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.14 Score=55.59 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=63.0
Q ss_pred CCCCeEEEECCCCchHHHHHhcC------CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC--CC-CCCceEE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH------DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP--YP-SRSFELA 283 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~------~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp--fp-d~sFDlV 283 (615)
.++.+|||+.++.|+=+.++++. .|++.|+++.=+. .+.+..+..|+. +.....|...++ .+ ...||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~-~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLK-RLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHH-HHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 34588999999999777666643 1356655543222 222333444665 456666765554 22 2359999
Q ss_pred Ee----cc-cccccccc----------------hHHHHHHHHhccCCCeEEEEEc
Q 007165 284 HC----SR-CRIDWLQR----------------DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 284 ~~----s~-~~l~~~~d----------------~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+. +. .+++-.++ ..++|..+.++|||||.|+.++
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 86 11 12211111 2348899999999999999987
No 241
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.07 E-value=0.043 Score=55.01 Aligned_cols=97 Identities=19% Similarity=0.284 Sum_probs=59.0
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHh----hccc--ccccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIY----DRGL--IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy----~RGl--iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|-|.++..|.+. +- .+|+=++- ++.+...- +.++ +-+.+.=.+.++--+.+||+|++...+
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPE--GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL 124 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence 47999999999999888642 21 12222332 23332221 2232 222322223322113699999988766
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+. +...++-|+-|+|+|||.+++.|.
T Consensus 125 ~~~~----~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP----DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC----CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 5332 356789999999999999998764
No 242
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.04 E-value=0.075 Score=57.25 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=85.0
Q ss_pred hcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhH
Q 007165 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHE 250 (615)
Q Consensus 174 ~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~ 250 (615)
+.|-.|.++-...+|.++...=-..+.++.. .+.+|||+=+|.|.|+..++.. .|.++|+.|..+.-
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~----------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~ 226 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVK----------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEY 226 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhc----------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHH
Confidence 3344455544455566655433333444332 2568999999999999998754 37788887765433
Q ss_pred HHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 251 NQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 251 a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.. +.++.+++. +....+|+...+...+.||-|++.. ......++..+.+.|++||.+-+..
T Consensus 227 L~-eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 227 LK-ENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred HH-HHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEe
Confidence 32 334434443 5678889887776558899999654 2344668889999999999998765
No 243
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.02 E-value=0.03 Score=57.45 Aligned_cols=99 Identities=13% Similarity=0.200 Sum_probs=66.6
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhcccccccccccccCCCCCCccceeccccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
+....-..|+|+.+|-|.++.+|... |-. .|+=+|- ++.+...-++++ -+.+.--+.+. ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~--~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPGA--VIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEEehhhh
Confidence 44444478999999999999988754 221 3444443 456666666653 12221122332 235899999999887
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+. +...++-|+=|+|+|||.++|-
T Consensus 101 ~~~----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC----CHHHHHHHHHHhCCCCcEEEEE
Confidence 443 3688999999999999999985
No 244
>PRK08317 hypothetical protein; Provisional
Probab=94.99 E-value=0.04 Score=54.64 Aligned_cols=98 Identities=26% Similarity=0.286 Sum_probs=61.6
Q ss_pred ceeeeeeccccchhHHhhhcCCC-cEEEEeccCCC-CCchhHHhhc--cccccc----ccccccCCCCCCccceeccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR--GLIGTV----HDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~-vwvmnvvp~~~-~~tL~~iy~R--GliG~~----hdwce~fstYprtyDl~Ha~~~ 530 (615)
.=..|+|+.+|-|+++..+.+.- .-. +|+=++- ++.+...-++ +.-... .|-.+ ++--+-+||+||+..+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEG-RVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG-LPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc-CCCCCCCceEEEEech
Confidence 33579999999999998886431 000 3333332 3445544444 111111 12111 1111368999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
|..+. +...++-++-|+|+|||++++-+
T Consensus 97 ~~~~~----~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 97 LQHLE----DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhccC----CHHHHHHHHHHHhcCCcEEEEEe
Confidence 87543 47889999999999999998864
No 245
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.91 E-value=0.032 Score=57.84 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=58.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcc----cccccccccccCCCCC-Cccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRG----LIGTVHDWCESFSTYP-RTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RG----liG~~hdwce~fstYp-rtyDl~Ha~~~fs~~ 534 (615)
..|+|..+|.|+++..|.... -.+|+=++- ++.+...-+|- -|-..+.=++.. .|| .+||+|++...|-.+
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeEEEEEhhhHHhC
Confidence 469999999999988885431 113333332 23333332221 121111111111 233 699999997655433
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.. -+...++-|+-|+|+|||.++|.|-
T Consensus 131 ~~--~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 131 SY--ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CH--HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 21 1467899999999999999999864
No 246
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.87 E-value=0.14 Score=56.03 Aligned_cols=20 Identities=30% Similarity=0.783 Sum_probs=17.5
Q ss_pred CCCCCCceEEEeccccccccc
Q 007165 274 PYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 274 pfpd~sFDlV~~s~~~l~~~~ 294 (615)
-||+++.+++|++. ++||+.
T Consensus 157 LfP~~Slh~~~Ss~-slHWLS 176 (386)
T PLN02668 157 LFPARSIDVFHSAF-SLHWLS 176 (386)
T ss_pred ccCCCceEEEEeec-cceecc
Confidence 38899999999998 599976
No 247
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.72 E-value=0.064 Score=57.76 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=38.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--------------------CCccccCChhchhHHHHHHHHH-----cCCCcEE-EE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--------------------DIIAMSLAPNDVHENQIQFALE-----RGIPSTL-GV 267 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--------------------~V~gvdis~~Dls~a~i~~A~e-----rg~~~~~-~v 267 (615)
...-+|+|+||..|..+..+.+. +|.--|+-.+|.+.-....... ...++.. .+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45578999999999777665421 1222355555543332221111 1122221 22
Q ss_pred -ecCCCCCCCCCCceEEEeccccccccc
Q 007165 268 -LGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 268 -~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
+....--||+++.|+++++. ++||+.
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~-alHWLS 121 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSY-ALHWLS 121 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-S
T ss_pred CchhhhccCCCCceEEEEEec-hhhhcc
Confidence 22334448999999999998 599964
No 248
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.70 E-value=0.021 Score=56.50 Aligned_cols=93 Identities=19% Similarity=0.305 Sum_probs=60.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhH----Hhhccc---ccccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKI----IYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~----iy~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
-+|+|..+|.|.++..|.+.. + +|+-+|. ++-+.. +-.+|+ -..-.|..+ + +.+.+||+|-+...|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 479999999999999998652 2 4444443 232222 233343 223345443 2 3467899999988765
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
.+.. -....++-+|-|.|+|||.+++
T Consensus 107 ~~~~--~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FLEA--KTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCH--HHHHHHHHHHHHHcCCCcEEEE
Confidence 3221 2467899999999999999655
No 249
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=94.68 E-value=0.016 Score=60.64 Aligned_cols=101 Identities=17% Similarity=0.431 Sum_probs=64.3
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhH----HhhcccccccccccccCCCCCCccceeccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKI----IYDRGLIGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~----iy~RGliG~~hdwce~fstYprtyDl~Ha~ 528 (615)
+..|. .|+|..+|.||++-.+... .+ +|+=++ +++.... |-++||-+...==|.-|...|=+||-|=+-
T Consensus 60 l~~G~--~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi 134 (273)
T PF02353_consen 60 LKPGD--RVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSI 134 (273)
T ss_dssp --TT---EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEE
T ss_pred CCCCC--EEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEE
Confidence 55554 8999999999999999866 54 344333 2344443 568887543331122233333499999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+.|-.+..+ +....+-+++|.|+|||.+++..
T Consensus 135 ~~~Ehvg~~--~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 135 EMFEHVGRK--NYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp SEGGGTCGG--GHHHHHHHHHHHSETTEEEEEEE
T ss_pred echhhcChh--HHHHHHHHHHHhcCCCcEEEEEe
Confidence 998876432 57889999999999999999873
No 250
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.54 E-value=0.057 Score=58.47 Aligned_cols=54 Identities=24% Similarity=0.375 Sum_probs=36.1
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCCC
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTKR 272 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~~ 272 (615)
+|||+-||+|.|+..|++. .|+|+++.+..+..+. +.|+..++ ++.|..+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~-~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR-ENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH-HHHHHTT--SEEEEE--SHH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH-HHHHHcCCCcceEEEeeccc
Confidence 7999999999999999875 7888888776665554 34444454 57787766543
No 251
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=94.51 E-value=0.03 Score=55.26 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=60.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHH----hhcccc--cccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII----YDRGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~i----y~RGli--G~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..|+|+.+|.|.++..|.... + .|+=+|- ++.+..+ -+.|+- +.-.|. +.++ +|.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g-~--~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~~-~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG-Y--DVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAAA-LNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC-C--eEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhcc-ccCCCCEEEEeccccc
Confidence 479999999999998887642 2 5555654 3444432 223431 111222 2222 3568999999888864
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEE
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
+.. -....++-++.|.|+|||+++|
T Consensus 107 ~~~--~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 LQA--GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred CCH--HHHHHHHHHHHHHhCCCcEEEE
Confidence 322 2467899999999999998554
No 252
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=94.49 E-value=0.14 Score=53.38 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=47.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCCC----cEEEEecCCCCCCCCCCceEEEec
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGIP----STLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~~----~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.++..||++|.|||.++..|+++ .|+++++.+.++.+-.... .|.+ ..+..+|....++| .||.++++
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCCCc--ccceeecc
Confidence 34578999999999999999865 7888877766654333211 2333 45667776666544 69999853
No 253
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=94.47 E-value=0.061 Score=57.57 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=58.3
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-Cchh---HHhh-ccc---ccccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLK---IIYD-RGL---IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~---~iy~-RGl---iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
+.|+|+.+|.|.++..|... +.-|. =+|.. ..+- .+-. .+. |-+.+.=-|.++. +.+||+|++.+++
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~---GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVV---GIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEE---EEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 67999999999999888653 32232 22311 1110 1100 010 1111111234444 7899999999887
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
-.. -+...+|-++-|.|+|||.+|+.
T Consensus 200 ~H~----~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHR----RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hcc----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 632 35889999999999999999985
No 254
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=94.45 E-value=1.4 Score=48.39 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=54.8
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCCCCCCCceEEEecccccccccch
Q 007165 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~ 296 (615)
+||=++=..|.++..|+...++.+ -.....+.+..+.+...+++.. +...+.. -+++ +.+|+|+.-. ---....
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~-~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~-~~~~-~~~d~vl~~~--PK~~~~l 121 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI-GDSYISELATRENLRLNGIDESSVKFLDST-ADYP-QQPGVVLIKV--PKTLALL 121 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee-ehHHHHHHHHHHHHHHcCCCcccceeeccc-cccc-CCCCEEEEEe--CCCHHHH
Confidence 599999999999999986655433 1111122333334444455432 2222221 1233 5599887321 1112233
Q ss_pred HHHHHHHHhccCCCeEEEEEc
Q 007165 297 GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 297 ~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+..|..+.++|.||+.++...
T Consensus 122 ~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 122 EQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred HHHHHHHHhhCCCCCEEEEEE
Confidence 557889999999999987544
No 255
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.29 E-value=0.07 Score=52.03 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=71.4
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc--ccccccccccCCCCCCccceeccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL--IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
.-.+|+|+.+|-|.++.++... |- -+|+-++- +..+...-+ .|+ |=+.+ -..+...+..||++.+++.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~--~d~~~~~~~~~D~v~~~~~ 106 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGNIDIIP--GEAPIELPGKADAIFIGGS 106 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe--cCchhhcCcCCCEEEECCC
Confidence 3457999999999998877532 21 12333332 222332211 122 11111 0122345678999998764
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc-ChhHHHHHHHHHhhcCccc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD-KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird-~~~~~~~~~~~~~~~~w~~ 581 (615)
.. .+.+++-++-|.|+|||.+++-+ ..+-..++.++++...++.
T Consensus 107 ~~-------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 107 GG-------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred cc-------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 32 47788889999999999999976 5666788888998888853
No 256
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=94.19 E-value=0.12 Score=50.89 Aligned_cols=142 Identities=11% Similarity=0.162 Sum_probs=81.9
Q ss_pred cCCChhhhhh--hHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcC-----CCcEEEEeccCCCCCchhH
Q 007165 426 VGVTTEEFHE--DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMSARLKI 498 (615)
Q Consensus 426 ~g~~~~~~~~--d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~-----~~vwvmnvvp~~~~~tL~~ 498 (615)
.|++.++|.. +...|++.+..= .+. .++-..=-.|+||.||-|.|+.++.. ..|...-.-| .-+..
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~--~l~-~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~----~~~~~ 80 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRAL--ALS-KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDE----KAINL 80 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHH--HHH-HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCH----HHHHH
Confidence 3666777775 445787777631 121 12222234799999999999776532 2344443322 22222
Q ss_pred Hhh----ccccc---c-cccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHH
Q 007165 499 IYD----RGLIG---T-VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINY 569 (615)
Q Consensus 499 iy~----RGliG---~-~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~ 569 (615)
+-+ -|+.. + -.|..+..+.++-.||++...+- ...+..++-++-|+|+|||.+++. -+.+.+.+
T Consensus 81 a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~-------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~ 153 (198)
T PRK00377 81 TRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG-------SEKLKEIISASWEIIKKGGRIVIDAILLETVNN 153 (198)
T ss_pred HHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC-------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHH
Confidence 111 12211 1 12333333334457888776431 134788899999999999999982 34556777
Q ss_pred HHHHHhhcCccc
Q 007165 570 IRKFITALKWDG 581 (615)
Q Consensus 570 ~~~~~~~~~w~~ 581 (615)
+...++.+.++.
T Consensus 154 ~~~~l~~~g~~~ 165 (198)
T PRK00377 154 ALSALENIGFNL 165 (198)
T ss_pred HHHHHHHcCCCe
Confidence 888887666654
No 257
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.12 E-value=0.19 Score=51.07 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCchHHHHHhc-----CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-C--CCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLS-----HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-Y--PSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~-----~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-f--pd~sFDlV~~s 286 (615)
++.+||-+|+++|....++++ ..|.++++++... ...+..|++|. ++.-...|+..-. | --..+|+|++-
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~-rdL~~la~~R~-NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM-RDLLNLAKKRP-NIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH-HHHHHHHHHST-TEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH-HHHHHHhccCC-ceeeeeccCCChHHhhcccccccEEEec
Confidence 446899999999988888774 2577888888654 45567787774 4444556654211 1 12479999964
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcCC--CCCCChhHHHHHHHHHHHHhhcceEEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE--AYAHDPENRRIWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~--~~~~~~e~~~~w~~l~~La~~l~W~l~ 346 (615)
- ......+.++.++...||+||.++++... ... .......+..-.+.++...++..
T Consensus 151 V---aQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~-t~~p~~vf~~e~~~L~~~~~~~~ 208 (229)
T PF01269_consen 151 V---AQPDQARIAALNARHFLKPGGHLIISIKARSIDS-TADPEEVFAEEVKKLKEEGFKPL 208 (229)
T ss_dssp ----SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-S-SSSHHHHHHHHHHHHHCTTCEEE
T ss_pred C---CChHHHHHHHHHHHhhccCCcEEEEEEecCcccC-cCCHHHHHHHHHHHHHHcCCChh
Confidence 3 22233355788899999999999997632 111 11222445544444444444444
No 258
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.07 E-value=0.07 Score=53.03 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=75.4
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHh----hccc--ccccc-cccccCCC-C-CCccceeccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL--IGTVH-DWCESFST-Y-PRTYDLLHAW 528 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy----~RGl--iG~~h-dwce~fst-Y-prtyDl~Ha~ 528 (615)
-.+|+|+.+|.|.++.+|... |- -+|+=++- ++-+...- ..|+ +-+.+ |+.+.++. + +.+||++-.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 468999999999999888643 32 13333332 22222221 1232 11222 33244442 3 5789999764
Q ss_pred ccccc----cccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccce
Q 007165 529 KVFSE----IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 529 ~~fs~----~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~~ 582 (615)
..... -..++.....+|-|+.|+|+|||.++|. +....+..+.+.+..-.|.++
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 32210 1122334688999999999999999885 788888888888888888873
No 259
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=94.03 E-value=0.035 Score=60.81 Aligned_cols=95 Identities=19% Similarity=0.391 Sum_probs=63.2
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhHHhhc--ccccccccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKIIYDR--GLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~iy~R--GliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|+.+|.|+++..+... .+ .|+=++ +++.+...-+| |+ ++ +=-+..+...+.+||+|.+.++|.....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l-~v-~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGL-PV-EIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccC-eE-EEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 47999999999999877653 32 455544 34555554443 22 11 1011122223678999999998875432
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
-+...++-++.|+|+|||.+++.+
T Consensus 244 --~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 --KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 246789999999999999999964
No 260
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.97 E-value=0.1 Score=55.71 Aligned_cols=94 Identities=12% Similarity=0.065 Sum_probs=57.6
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCCCc-hh---HH----hhcccccccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMSAR-LK---II----YDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~t-L~---~i----y~RGliG~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
+.|+|..+|-|.++.++.....- .|+=+|.... +. .+ -..+.+....-=-|.++. +-+||+|-+.+++-
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLY 199 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhh
Confidence 68999999999998777654321 2343332111 10 10 001111111111223332 24799999999876
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+ -+..++|-|+-|+|||||.+|+.
T Consensus 200 H~----~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HR----KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cc----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 43 36899999999999999999975
No 261
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=93.85 E-value=0.17 Score=59.69 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=73.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhh----cccc----c-ccccccccCCCCCCccceecccc-
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI----G-TVHDWCESFSTYPRTYDLLHAWK- 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGli----G-~~hdwce~fstYprtyDl~Ha~~- 529 (615)
++|+|..||.|+|+.++.....- .|+-+|.. .-|.+.-+ -|+= = +-.|..+.+...+++||+|=.|-
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 58999999999999888765332 25555543 44444322 1221 1 12243332223368999997652
Q ss_pred ----------cccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCcccee
Q 007165 530 ----------VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWL 583 (615)
Q Consensus 530 ----------~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~ 583 (615)
+|+. .+ ...+++-..=|+|+|||.+++-....-+....+.+..-.++.+.
T Consensus 618 ~f~~~~~~~~~~~~-~~---~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~ 677 (702)
T PRK11783 618 TFSNSKRMEDSFDV-QR---DHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEE 677 (702)
T ss_pred CCCCCCccchhhhH-HH---HHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEE
Confidence 2221 11 25677777789999999999976666666667777777888753
No 262
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.78 E-value=0.032 Score=58.45 Aligned_cols=111 Identities=14% Similarity=0.256 Sum_probs=70.4
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhH----HhhcccccccccccccCCC--CCCccceeccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIGTVHDWCESFST--YPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~----iy~RGliG~~hdwce~fst--YprtyDl~Ha~~~fs~~ 534 (615)
+|+|..+|.|.++..|.... ..|+=+|.. ..+.. +-+.|+ . .+--+.-+.+ .+..||+|-+..+|..+
T Consensus 123 ~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 79999999999998887653 245555542 33332 234455 1 1111111111 27899999999887744
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEE---cCh-----------hHHHHHHHHHhhcCccc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIR---DKS-----------SIINYIRKFITALKWDG 581 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iir---d~~-----------~~~~~~~~~~~~~~w~~ 581 (615)
.. -.+..++-+|-|.|+|||++++- ++. ---++++.+... |++
T Consensus 198 ~~--~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i 254 (287)
T PRK12335 198 NR--ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEI 254 (287)
T ss_pred CH--HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEE
Confidence 32 25788999999999999995542 111 124567777766 876
No 263
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=93.64 E-value=0.092 Score=55.16 Aligned_cols=111 Identities=12% Similarity=0.143 Sum_probs=66.0
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccccccccccccC-CCCCCccceeccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESF-STYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~f-stYprtyDl~Ha~~~fs~~ 534 (615)
..|+|+.+|.|.++.++...... .|+=+|- +..+...-++ |+-...++-+... ..-+..||++.++.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~--~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAA--KVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 57999999999987776544321 3333332 2333332221 2211122222211 22246899999986544
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCccc
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 581 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~~ 581 (615)
.+..++-++-|+|+|||++|+..-. +-.++|.+.+++- |+.
T Consensus 237 -----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 237 -----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred -----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Cce
Confidence 2567888999999999999997532 2245566666655 765
No 264
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.64 Score=46.07 Aligned_cols=134 Identities=21% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHH
Q 007165 176 GEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQ 252 (615)
Q Consensus 176 g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~ 252 (615)
|-.+.+|.+ ....+-.++..+.+-.++... .-.+.++||+=+|+|.++...+++ .++.+|.+..-....
T Consensus 11 gr~L~~p~~-~~~RPT~drVREalFNil~~~------~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l- 82 (187)
T COG0742 11 GRKLKTPDG-PGTRPTTDRVREALFNILAPD------EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL- 82 (187)
T ss_pred CCcccCCCC-CCcCCCchHHHHHHHHhcccc------ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH-
Confidence 444555543 334445555666666666521 124578999999999999998876 455554433222111
Q ss_pred HHHHHHcC--CCcEEEEecCCCC-CCCCC--CceEEEeccccccc-ccchHHHHH--HHHhccCCCeEEEEEcC
Q 007165 253 IQFALERG--IPSTLGVLGTKRL-PYPSR--SFELAHCSRCRIDW-LQRDGILLL--ELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 253 i~~A~erg--~~~~~~v~d~~~L-pfpd~--sFDlV~~s~~~l~~-~~d~~~~L~--ei~RvLkPGG~Lvis~P 318 (615)
.+..+..+ .+..+...|+... +-... +||+|+.-- -++. +.+....+. +-..+|+|||.+++-..
T Consensus 83 ~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 83 KENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 12222234 4566666675532 21223 499999643 2221 111122233 35678999999999653
No 265
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=93.59 E-value=0.045 Score=56.18 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=63.3
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccccc---ccc-cccccCC-CCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLIG---TVH-DWCESFS-TYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGliG---~~h-dwce~fs-tYprtyDl~Ha~~~ 530 (615)
..|+|..+|.|.++..|.... -+|+=++- ++-+...-+ .|+.. +.+ |.. .+. .-+.+||++.+.++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhH
Confidence 489999999999999998763 25555553 345544332 34422 111 111 122 23579999999998
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+..+. +...++-|+-|+|+|||.++|-
T Consensus 122 l~~~~----~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA----DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC----CHHHHHHHHHHHcCCCeEEEEE
Confidence 87543 3578999999999999999874
No 266
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.50 E-value=0.19 Score=51.58 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=64.6
Q ss_pred eeeeeccccchhHHhhhcCCC---cEEEEeccCCCCCchhHHh----hcccccccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKD---VWVMNVAPVRMSARLKIIY----DRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~---vwvmnvvp~~~~~tL~~iy----~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.+|+|+.+|.|..+.++.... |..+-.-| .-+...- ..|+-...+-.+. . -+||++.|+-+..
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~----~~l~~A~~n~~~~~~~~~~~~~~~---~--~~fD~Vvani~~~- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDP----QAVEAARENAELNGVELNVYLPQG---D--LKADVIVANILAN- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCH----HHHHHHHHHHHHcCCCceEEEccC---C--CCcCEEEEcCcHH-
Confidence 579999999998887776442 44333322 2222221 1232110110010 0 1799999875433
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHHhhcCccc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~~~~~w~~ 581 (615)
.+..++-++-|.|+|||.+|+.+-. +-.+.+.+.+....++.
T Consensus 191 ------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 191 ------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTL 233 (250)
T ss_pred ------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEE
Confidence 1456778999999999999998643 34667778888888876
No 267
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.30 E-value=0.097 Score=50.73 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=41.3
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCCC--CCCCC-ceEEEec
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRLP--YPSRS-FELAHCS 286 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~Lp--fpd~s-FDlV~~s 286 (615)
+|+|+.||.|..+.+++.. .|+++|+.+.-+.-++ ..|+-.|+ ++.+..+|...+. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~-hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK-HNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH-HHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999876 5888877665543333 34444465 4788888854331 12122 8999975
No 268
>PRK06202 hypothetical protein; Provisional
Probab=93.13 E-value=0.27 Score=49.53 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=67.0
Q ss_pred cCCceeeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhccc-cc--ccccccccCCCCCCccceeccc
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDRGL-IG--TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~RGl-iG--~~hdwce~fstYprtyDl~Ha~ 528 (615)
....-..|+|..+|.|+++.+|.. +.-...+|+-+|- ++-|.....+.- -| ...-=++.++.-+.+||++-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334556899999999999888753 1112246777774 466666555421 01 1111134455556899999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..|..+... ++..+|-||-|++| |.++|.|-
T Consensus 137 ~~lhh~~d~--~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 137 HFLHHLDDA--EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred CeeecCChH--HHHHHHHHHHHhcC--eeEEEecc
Confidence 988755332 25679999999999 66667663
No 269
>PRK14968 putative methyltransferase; Provisional
Probab=93.12 E-value=0.22 Score=47.77 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=76.0
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHH---------hhcccccccccccccCCCCCCccceecccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKII---------YDRGLIGTVHDWCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~i---------y~RGliG~~hdwce~fstYprtyDl~Ha~~ 529 (615)
-..|+|+.+|-|.++.+|.... -+|+=++- ++.+... -+||+.-+-+|+.+.+.. .+||++=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3479999999999999987663 25555543 3444433 123344456777776653 3799996554
Q ss_pred cccccc-----------------cCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCccc
Q 007165 530 VFSEIE-----------------ERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKWDG 581 (615)
Q Consensus 530 ~fs~~~-----------------~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w~~ 581 (615)
-|.... .....+.+++-++.|+|+|+|.+++=-. ..-.+++.+.+....|+.
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCee
Confidence 432100 0012356789999999999998876422 233577888888888876
No 270
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=92.89 E-value=0.21 Score=51.09 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=59.8
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhhcc-cccccccccccCCCCCCccceecccccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDRG-LIGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~RG-liG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
+....-.+|+|..+|-|.++..|... |. -+|+=+|-. .-+...-++- =+.+...=.+.+. -+.+||+++++..|
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 103 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL 103 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh
Confidence 33345578999999999999888643 21 122222321 2222111110 0111111111221 24689999999988
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+. +...++-+|-|+|+|||.+++.
T Consensus 104 ~~~~----d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 104 QWLP----DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hhCC----CHHHHHHHHHHhcCCCcEEEEE
Confidence 7443 3678999999999999999985
No 271
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.88 E-value=0.46 Score=49.90 Aligned_cols=103 Identities=13% Similarity=0.115 Sum_probs=51.6
Q ss_pred CCCeEEEECCCCchHHHHHh-cCCCccccCChhchhHHHHHHHHH-------cCCCcEEEEecCCCCCCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLL-SHDIIAMSLAPNDVHENQIQFALE-------RGIPSTLGVLGTKRLPYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~-~~~V~gvdis~~Dls~a~i~~A~e-------rg~~~~~~v~d~~~Lpfpd~sFDlV~~s 286 (615)
.+++|+=||||.=-++..+. +....+..+...|.+++.++.+++ .+..+.|..+|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 35699999999876655544 221112222233344444444322 2446788888877766555789999976
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
..+-.-..+..++|..+.+.++||..+++-.
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5322122356789999999999999999854
No 272
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=92.87 E-value=0.098 Score=51.95 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=58.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc--ccccccccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL--IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl--iG~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|..+|-|.+...|... +.. .|+-++. ++-+...-.+.- +-.++.=.+.++-.+.+||+|.+++++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA--EFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC--cEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc--
Confidence 57999999999999888643 111 1122221 111111111110 011111123334345789999999887633
Q ss_pred CCCChhhhhhhhcccccCCcEEEEEc
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+...++-++-|+|+|||++++..
T Consensus 112 --~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 --DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 247889999999999999999864
No 273
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.77 E-value=0.22 Score=49.00 Aligned_cols=99 Identities=20% Similarity=0.227 Sum_probs=59.6
Q ss_pred ceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc----ccc-cccccccCCCCCCccceecccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL----IGT-VHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl----iG~-~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.=.+|+|..+|.|+++.++... +. --+++-++. +..+..+-++.- +-. ..|-.| .+.-+-+||+|+....+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeee
Confidence 3458999999999998887633 21 012333332 233333333321 111 112212 12123589999987766
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
... .++..++-++-++|+|||.+++-+.
T Consensus 117 ~~~----~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 117 RNV----TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCc----ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 532 3578899999999999999998653
No 274
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.68 E-value=0.031 Score=49.18 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=37.7
Q ss_pred EEECCCCchHHHHHhcC-------CCccccCChhchhHHHHHHHHHcCC--CcEEEEecCCCC--CCCCCCceEEEeccc
Q 007165 220 LDVGCGVASFGAYLLSH-------DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGTKRL--PYPSRSFELAHCSRC 288 (615)
Q Consensus 220 LDIGCGtG~~a~~L~~~-------~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~~~L--pfpd~sFDlV~~s~~ 288 (615)
||||+..|..+..+++. .+.++|..+. .+...+..++.+. .+.+..++.... .++.++||+|+.-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777642 3566666553 1122233333222 467777765322 13357899999543
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-|-.+.....+..+.+.|+|||.+++.+
T Consensus 78 -~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 -DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 3333445668899999999999999853
No 275
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=92.68 E-value=0.14 Score=54.35 Aligned_cols=71 Identities=15% Similarity=-0.083 Sum_probs=40.3
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcC---CCcEEEEecCCCCC--CCCC--CceEEEec
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERG---IPSTLGVLGTKRLP--YPSR--SFELAHCS 286 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg---~~~~~~v~d~~~Lp--fpd~--sFDlV~~s 286 (615)
+..+||.+||.|..+..+++..-....+.+.|.++.+++.|+++- .++.+...+...+. .+++ +||.|++-
T Consensus 20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 468999999999999999865100123334455566666666542 23455555543332 1111 56666543
No 276
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.61 E-value=0.84 Score=45.85 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=70.7
Q ss_pred EEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCC--CcEEEEecC-CCCCCCCCCceEEEecccccc
Q 007165 219 VLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGI--PSTLGVLGT-KRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~--~~~~~v~d~-~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
|.||||--|.++.+|.+. .++++|+++.-+..+....+ ..|+ .+.+..+|. ..++ +....|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHH
Confidence 689999999999999865 57788888877666654443 3343 467777773 4443 2233788887653221
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
-...+|.+....++..-.|++.-... ...++..+....|.+..+.
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~~----------~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNTH----------AYELRRWLYENGFEIIDED 123 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS-----------HHHHHHHHHHTTEEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCCC----------hHHHHHHHHHCCCEEEEeE
Confidence 23457777777777777788754221 4567778888899887554
No 277
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.55 E-value=0.17 Score=54.24 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=65.0
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cc---ccccccccccCCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.|+|..+|-|.|+.+|.... .+|+=+|.. .-+.+.-++ ++ |-..+.=.|.+...+.+||++=+.+++..
T Consensus 134 ~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred EEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 79999999999998887542 245555543 444444333 22 11222223444444579999999998875
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+. +...+|-||=|+|+|||.++|-+
T Consensus 211 v~----d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 211 VA----NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEE
Confidence 54 47899999999999999999875
No 278
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=92.48 E-value=0.19 Score=50.32 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=21.0
Q ss_pred CeEEEECCCCchHHHHHhcC----CCccccC
Q 007165 217 RNVLDVGCGVASFGAYLLSH----DIIAMSL 243 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~----~V~gvdi 243 (615)
-.+.|||||.|.+...|+.. -+.|++|
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehh
Confidence 34899999999999888754 4566654
No 279
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=92.13 E-value=0.087 Score=52.49 Aligned_cols=152 Identities=14% Similarity=0.261 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCC--CcEEEEeccCCC---CCch----hHHhhccccccc
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM---SARL----KIIYDRGLIGTV 508 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~---~~tL----~~iy~RGliG~~ 508 (615)
..|-++.+ |...|...+...+|+|+++..++-|-|.+.|... .+-++-++|..- ...| .|-+-++-+
T Consensus 23 ~~~YE~~K-~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv--- 98 (201)
T PF05401_consen 23 TSWYERRK-YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV--- 98 (201)
T ss_dssp T-HHHHHH-HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T---
T ss_pred CCHHHHHH-HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC---
Confidence 45666654 3233332478999999999999999999999754 688888877531 1111 122222222
Q ss_pred ccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChh----------HHHHHHHHHhhcC
Q 007165 509 HDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS----------IINYIRKFITALK 578 (615)
Q Consensus 509 hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~----------~~~~~~~~~~~~~ 578 (615)
.+..+ +.+|||||.+.++--+.. .=++..++-.|...|+|||.+|+=.-.+ =.+-|..++...-
T Consensus 99 ---p~~~P--~~~FDLIV~SEVlYYL~~-~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 99 ---PEFWP--EGRFDLIVLSEVLYYLDD-AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHL 172 (201)
T ss_dssp ---TT-----SS-EEEEEEES-GGGSSS-HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHS
T ss_pred ---CCCCC--CCCeeEEEEehHhHcCCC-HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHh
Confidence 22222 589999999998874432 1236667888999999999999954332 1234455555544
Q ss_pred ccceeeccccccCcCCCCCceEEEEE
Q 007165 579 WDGWLSEVEPRIDALSSSEERVLIAK 604 (615)
Q Consensus 579 w~~~~~~~~~~~~~~~~~~e~~l~~~ 604 (615)
=++.....++.. ..|.-|+++
T Consensus 173 ~~~~~~~~~~~~-----~~~~~~~~~ 193 (201)
T PF05401_consen 173 TEVERVECRGGS-----PNEDCLLAR 193 (201)
T ss_dssp EEEEEEEEE-SS-----TTSEEEEEE
T ss_pred hheeEEEEcCCC-----CCCceEeee
Confidence 454333333222 246666654
No 280
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=92.06 E-value=0.28 Score=51.10 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=51.7
Q ss_pred CCCeEEEECCCCc--hHHHHHh-----cCCCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCC-----------
Q 007165 215 NIRNVLDVGCGVA--SFGAYLL-----SHDIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLP----------- 274 (615)
Q Consensus 215 ~~~~VLDIGCGtG--~~a~~L~-----~~~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lp----------- 274 (615)
..+..||||||.= ......+ +++|.-+|..+.-+..+..-. ....+ ..+..+|..+..
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 5688999999954 2333343 346777877665443322111 22234 677888865421
Q ss_pred C-CCCCceEEEecccccccccc---hHHHHHHHHhccCCCeEEEEEcCC
Q 007165 275 Y-PSRSFELAHCSRCRIDWLQR---DGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 275 f-pd~sFDlV~~s~~~l~~~~d---~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+ .++.+=+++ ..++||++| +..++..+...|.||.+|+++...
T Consensus 146 lD~~rPVavll--~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 146 LDFDRPVAVLL--VAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp --TTS--EEEE--CT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCCCCCeeeee--eeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 0 123333333 337999866 467999999999999999998754
No 281
>PRK13699 putative methylase; Provisional
Probab=91.91 E-value=0.45 Score=48.47 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=47.1
Q ss_pred EEEecCCCC--CCCCCCceEEEecccc-c--c-----------cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHH
Q 007165 265 LGVLGTKRL--PYPSRSFELAHCSRCR-I--D-----------WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (615)
Q Consensus 265 ~~v~d~~~L--pfpd~sFDlV~~s~~~-l--~-----------~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~ 328 (615)
+..+|..++ .++++++|+|+..--- + . +..-....+.|+.|+|||||.+++.... ..
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--~~----- 76 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--NR----- 76 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc--cc-----
Confidence 445554332 4677888888875200 0 0 0011246889999999999999864321 11
Q ss_pred HHHHHHHHHHhhcceEEEEeeCceEEEeccCC
Q 007165 329 RIWNAMYDLLKSMCWKIVSKKDQTVIWAKPIS 360 (615)
Q Consensus 329 ~~w~~l~~La~~l~W~l~~~~~~~aiwqKP~~ 360 (615)
...+....+...|.+. +..||.|+..
T Consensus 77 --~~~~~~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 77 --VDRFMAAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred --HHHHHHHHHHCCCEEe----eEEEEECCCC
Confidence 1223334455566544 4568998643
No 282
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=91.75 E-value=0.1 Score=52.95 Aligned_cols=96 Identities=11% Similarity=0.126 Sum_probs=59.7
Q ss_pred eeeeeccccchhHHhhhcCC---CcEEEEeccCCC-CCchhHHhhc----ccc---c-ccccccccCCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYDR----GLI---G-TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~-~~tL~~iy~R----Gli---G-~~hdwce~fstYprtyDl~Ha~ 528 (615)
..|+|..+|-|.++.+|.+. |-+ +|+-+|- ++-|...-++ |.. = +..|.++ ++ +..+|++.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~--~~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VE--IKNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC--CCCCCEEeee
Confidence 46999999999999888653 433 3444543 3444333221 211 0 1123332 11 1358998877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+..+... +...+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~~~--~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLPPE--DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCCHH--HHHHHHHHHHHhcCCCeEEEEeec
Confidence 766643211 256899999999999999999975
No 283
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.73 E-value=0.4 Score=47.64 Aligned_cols=94 Identities=16% Similarity=0.277 Sum_probs=59.3
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----ccc------ccccccccccCCCCCCccceeccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGL------IGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGl------iG~~hdwce~fstYprtyDl~Ha~ 528 (615)
-.+|+|+.+|-|.++..|.+... .|+=++. +..+...-. -|+ .+-..+|.. ..|-+||+|.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~D~i~~~ 119 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAE---KGAKSFDVVTCM 119 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhc---CCCCCccEEEeh
Confidence 34799999999999887764321 1222222 122222211 122 122223322 225789999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
+++... -+...++-++-++|+|+|.+++.+.
T Consensus 120 ~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 120 EVLEHV----PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred hHHHhC----CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 887743 2578899999999999999999753
No 284
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=91.72 E-value=0.45 Score=49.27 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc---CCCcEEEE
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER---GIPSTLGV 267 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er---g~~~~~~v 267 (615)
....+.+.+.+.+. +...|||||+|+|.++..|++. ++++++.. ....+..+++ ..++.+..
T Consensus 16 ~~~~~~Iv~~~~~~--------~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d-----~~~~~~L~~~~~~~~~~~vi~ 82 (262)
T PF00398_consen 16 PNIADKIVDALDLS--------EGDTVLEIGPGPGALTRELLKRGKRVIAVEID-----PDLAKHLKERFASNPNVEVIN 82 (262)
T ss_dssp HHHHHHHHHHHTCG--------TTSEEEEESSTTSCCHHHHHHHSSEEEEEESS-----HHHHHHHHHHCTTCSSEEEEE
T ss_pred HHHHHHHHHhcCCC--------CCCEEEEeCCCCccchhhHhcccCcceeecCc-----HhHHHHHHHHhhhcccceeee
Confidence 44566666666533 3478999999999999999864 56666554 4444555543 45688889
Q ss_pred ecCCCCCCCC---CCceEEEecccccccccchHHHHHHHHhccCC
Q 007165 268 LGTKRLPYPS---RSFELAHCSRCRIDWLQRDGILLLELDRLLRP 309 (615)
Q Consensus 268 ~d~~~Lpfpd---~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkP 309 (615)
.|...+..+. +.-..|++ + +.+ .-...++.++...-+.
T Consensus 83 ~D~l~~~~~~~~~~~~~~vv~-N--lPy-~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 83 GDFLKWDLYDLLKNQPLLVVG-N--LPY-NISSPILRKLLELYRF 123 (262)
T ss_dssp S-TTTSCGGGHCSSSEEEEEE-E--ETG-TGHHHHHHHHHHHGGG
T ss_pred cchhccccHHhhcCCceEEEE-E--ecc-cchHHHHHHHhhcccc
Confidence 9988877654 34455553 3 444 1223456666553333
No 285
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=91.70 E-value=0.33 Score=48.95 Aligned_cols=117 Identities=19% Similarity=0.363 Sum_probs=73.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHH----hhccc--ccccc-cccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGL--IGTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~i----y~RGl--iG~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|..+|-|.|+.++... |-+ +|+-++- +..+... -..|+ +-+++ |+-+.|. +.+||+|-++--|
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy 164 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDA--RVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPPY 164 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCCC
Confidence 36999999999999998754 322 4444442 2333322 22343 22222 3333332 3689999886554
Q ss_pred cc------cccCCCC----------------hhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccc
Q 007165 532 SE------IEERGCS----------------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 532 s~------~~~~~c~----------------~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~ 581 (615)
.. +...... ...++-++-|+|+|||.+++.....-.+++++++....++.
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 42 1000000 23567789999999999999887777888999998888764
No 286
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=91.64 E-value=0.16 Score=51.07 Aligned_cols=95 Identities=14% Similarity=0.272 Sum_probs=61.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cccccc--ccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GLIGTV--HDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----GliG~~--hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
..|+|+.+|-|.++..|.+.. .+|+=++.. +.+...-++ |+-..+ .|+.+-....+-+||+|.++++|..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 359999999999998887653 345545432 333332222 332222 2332221123368999999988774
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.. +...+|-++.|+|+|||.+++.+
T Consensus 127 ~~----~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 VP----DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred cC----CHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 47889999999999999999975
No 287
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=91.44 E-value=0.39 Score=49.90 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=81.7
Q ss_pred CChhhhhhhHhhHHHHHHHHHHhhhccccCCceeeeeeccccchh----HHhhhcC----CCcEEEEeccCCC-CCchhH
Q 007165 428 VTTEEFHEDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGG----FAAALKD----KDVWVMNVAPVRM-SARLKI 498 (615)
Q Consensus 428 ~~~~~~~~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~gg----faaal~~----~~vwvmnvvp~~~-~~tL~~ 498 (615)
+.+..|-.|...|....+.....+......+.--+|.|..++-|- .|..|.+ .+.|...|+=+|- +.-|-.
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 345568888899998777543322111112233579999999995 4544432 1235556766663 243432
Q ss_pred Hhhccc-----------------------------------ccccccccccCCCCCCccceecccccccccccCCCChhh
Q 007165 499 IYDRGL-----------------------------------IGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFED 543 (615)
Q Consensus 499 iy~RGl-----------------------------------iG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~ 543 (615)
. .+|. .=..||=.+.-. -+..||+|.+.++|..+... ....
T Consensus 148 A-r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~~--~~~~ 223 (264)
T smart00138 148 A-RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDEP--TQRK 223 (264)
T ss_pred H-HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCHH--HHHH
Confidence 1 1111 001345454311 25789999999888744221 2567
Q ss_pred hhhhhcccccCCcEEEEEcChhH
Q 007165 544 LLIEMDRMLRPEGFVIIRDKSSI 566 (615)
Q Consensus 544 i~~EmdRilRp~g~~iird~~~~ 566 (615)
++-+|-|+|+|||+++|-....+
T Consensus 224 ~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHhCCCeEEEEECcccC
Confidence 99999999999999999876544
No 288
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.36 E-value=0.26 Score=40.69 Aligned_cols=95 Identities=20% Similarity=0.326 Sum_probs=56.5
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHh---hcc---cccccccccccCC-CCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIY---DRG---LIGTVHDWCESFS-TYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy---~RG---liG~~hdwce~fs-tYprtyDl~Ha~~~fs~ 533 (615)
.|+|..+|.|+++..+...+. .+++-.+.. +-+...- ..+ .+=.++.=.+.+. .-+.+||++.+++.+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 378999999999988876322 222222321 1111111 111 1112221122222 23578999999998873
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
... ....++-.+.+.|||+|.+++.
T Consensus 79 ~~~---~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVE---DLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhh---HHHHHHHHHHHHcCCCCEEEEE
Confidence 222 4678888889999999999986
No 289
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=91.16 E-value=0.14 Score=44.96 Aligned_cols=96 Identities=23% Similarity=0.291 Sum_probs=59.2
Q ss_pred eeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHHhhc----cccc----ccccccccCCCCCCccceecccccc
Q 007165 462 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYDR----GLIG----TVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~iy~R----GliG----~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.|+|+.+|.|.++.+|.+ .+-.- |+=++- +..+.+.-+| ++-. +-.|+.+. ...+-.||++.+.+ |
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~v~~~~-~ 79 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGAR--VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFD-PDFLEPFDLVICSG-F 79 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSE--EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGG-TTTSSCEEEEEECS-G
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCE--EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccC-cccCCCCCEEEECC-C
Confidence 589999999999999987 23332 333332 3344433222 2211 22344233 33444599999999 3
Q ss_pred c--ccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 532 S--EIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 532 s--~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+ .+... -....++-++-+.|+|||.++|.+
T Consensus 80 ~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2 11111 235677888999999999999975
No 290
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.13 E-value=0.74 Score=47.28 Aligned_cols=135 Identities=18% Similarity=0.307 Sum_probs=79.1
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc---ccc---c-ccccccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR---GLI---G-TVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R---Gli---G-~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
.+|+|+.+|-|.++.+|... |-+ +|+=++. ++.+.+.-++ ++. - +-.|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~~--~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPDA--EVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 46999999999999988643 222 3444442 2344333222 211 1 1234544443 4789999875433
Q ss_pred cccc------cC----CC------------ChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceeeccccc
Q 007165 532 SEIE------ER----GC------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPR 589 (615)
Q Consensus 532 s~~~------~~----~c------------~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~ 589 (615)
.... .. .. .+..++-++-++|+|||++++--...--+.+++++....+.. +...
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~-v~~~--- 261 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFAD-VETR--- 261 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCce-eEEe---
Confidence 2100 00 00 134567788899999999999655555667888888766652 1211
Q ss_pred cCcCCCCCceEEEEEe
Q 007165 590 IDALSSSEERVLIAKK 605 (615)
Q Consensus 590 ~~~~~~~~e~~l~~~k 605 (615)
. ...+.+++++++|
T Consensus 262 ~--d~~~~~r~~~~~~ 275 (275)
T PRK09328 262 K--DLAGRDRVVLGRR 275 (275)
T ss_pred c--CCCCCceEEEEEC
Confidence 1 1246889998865
No 291
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=91.04 E-value=0.17 Score=43.74 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=45.1
Q ss_pred eeccccchhHHhhhcCCCcEEEEeccCC-CCCchhH----Hhhcccc---cccccccccCCCCC-Cccceeccccccccc
Q 007165 464 MDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKI----IYDRGLI---GTVHDWCESFSTYP-RTYDLLHAWKVFSEI 534 (615)
Q Consensus 464 mdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~----iy~RGli---G~~hdwce~fstYp-rtyDl~Ha~~~fs~~ 534 (615)
||..+|-|.++..|...- --..++=+| +++-|-. +.+.+.- =+-.+--+.+...+ .+||+|.+.++|..+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 578889999988887552 222333333 2333321 2222211 01112223344444 599999999999977
Q ss_pred ccCCCChhhhhhhhcccccCCcEE
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFV 558 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~ 558 (615)
. ++..++-.+-+.|+|||.+
T Consensus 80 -~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S----HHHHHHHHTTT-TSS-EE
T ss_pred -h---hHHHHHHHHHHHcCCCCCC
Confidence 3 4889999999999999975
No 292
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=90.86 E-value=0.19 Score=51.41 Aligned_cols=96 Identities=14% Similarity=0.228 Sum_probs=60.1
Q ss_pred eeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCC-Cccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYP-RTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYp-rtyDl~Ha~ 528 (615)
..|+|..+|-|..+.+|.. .|-| .|+=+|. ++-|...-+| |+ +-+.+ ..+.+.| ..||++-++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~---~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDIRDIAIENASMVVLN 132 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe---CChhhCCCCCCCEEehh
Confidence 3699999999999887754 3544 3444443 3444443222 22 22222 2222222 358988877
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
..+..+.. -....++-||-|.|+|||.+++.|.
T Consensus 133 ~~l~~l~~--~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEP--SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCH--HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 66664432 2357899999999999999999873
No 293
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=90.57 E-value=0.17 Score=53.12 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCC-C-CCCCCceEEEe-
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRL-P-YPSRSFELAHC- 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~L-p-fpd~sFDlV~~- 285 (615)
+..+|||+++|.|.=+.++++. .+++.|++..=+.. ..+.++..|.. +.....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~-l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKR-LKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHH-HHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHH-HHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence 4467999999999877776642 45566555433221 12233344654 34444565443 1 23346999986
Q ss_pred ---ccc-ccccccc----------------hHHHHHHHHhcc----CCCeEEEEEc
Q 007165 286 ---SRC-RIDWLQR----------------DGILLLELDRLL----RPGGYFVYSS 317 (615)
Q Consensus 286 ---s~~-~l~~~~d----------------~~~~L~ei~RvL----kPGG~Lvis~ 317 (615)
+.. ++...++ ..++|..+.+.+ ||||+++.++
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 211 1111111 134889999999 9999999987
No 294
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=90.53 E-value=0.3 Score=48.33 Aligned_cols=91 Identities=14% Similarity=0.247 Sum_probs=59.5
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----C-CCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----G-IPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g-~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
..+.|+|+|+|.++...+.. +|++++..| ...+.|.+. | .+..++++|+....| ..-|+|+|-..-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP-----k~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDP-----KRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCc-----HHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 56899999999777655543 677775543 344555554 2 356788888888887 568999985411
Q ss_pred cccccc-hHHHHHHHHhccCCCeEEE
Q 007165 290 IDWLQR-DGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 290 l~~~~d-~~~~L~ei~RvLkPGG~Lv 314 (615)
--.+.. .-.+++.+...||-.+.++
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCccc
Confidence 111112 2346777777888888877
No 295
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.29 E-value=2.8 Score=45.30 Aligned_cols=106 Identities=18% Similarity=0.070 Sum_probs=53.6
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHH----HHcCCC-cEEEEec--CCCCCCC-CCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFA----LERGIP-STLGVLG--TKRLPYP-SRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A----~erg~~-~~~~v~d--~~~Lpfp-d~sFDlV~~s 286 (615)
.+++|||+|.|.|.-...+.+.-..--+.+-.+.+++..+.. ..-+.. ..+...| ..+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 456799999999965554443210111111112333332221 111111 1111111 2234443 3568888765
Q ss_pred ccccccccc--hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 287 RCRIDWLQR--DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 287 ~~~l~~~~d--~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
.-.++--.. ....++.+..++.|||.|+|..+..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 533332111 1237888899999999999998654
No 296
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.29 E-value=1.3 Score=48.35 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=66.5
Q ss_pred CeEEEECCCCchHHHHHh--cCC-----------------------------------------CccccCChhchhHHHH
Q 007165 217 RNVLDVGCGVASFGAYLL--SHD-----------------------------------------IIAMSLAPNDVHENQI 253 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~--~~~-----------------------------------------V~gvdis~~Dls~a~i 253 (615)
..++|-=||+|++....+ ..+ +.|+|+.+..+..+.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak- 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK- 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH-
Confidence 579999999998876543 211 336666666554443
Q ss_pred HHHHHcCCC--cEEEEecCCCCCCCCCCceEEEeccc---ccccccch----HHHHHHHHhccCCCeEEEEEcCC
Q 007165 254 QFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRC---RIDWLQRD----GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 254 ~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~---~l~~~~d~----~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..|++.|+. +.|.++|+..++-+-..+|+|+|+-- .+.-.... ..+...+.+.++--+.++|++..
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 445555665 88999999888744478999998631 01101111 23556777888888899998743
No 297
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.29 E-value=1.3 Score=47.97 Aligned_cols=120 Identities=21% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccc---cCChhchhHHHHH---HHHHcCCC--cEEE
Q 007165 195 YILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAM---SLAPNDVHENQIQ---FALERGIP--STLG 266 (615)
Q Consensus 195 y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gv---dis~~Dls~a~i~---~A~erg~~--~~~~ 266 (615)
|......|++.....+. ++.+|||+.+..|+=+..|.++---.. -+...|.+..... ...++-.. ..+.
T Consensus 138 ~rqeavSmlPvL~L~v~---p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~ 214 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVK---PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVT 214 (375)
T ss_pred hhhhhhhccchhhcccC---CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeee
Confidence 44455566664443333 446799999999988887775400000 1223344333322 22233221 2222
Q ss_pred EecCCCCC---------CCCCCceEEEec----c-ccccccc----------------c-hHHHHHHHHhccCCCeEEEE
Q 007165 267 VLGTKRLP---------YPSRSFELAHCS----R-CRIDWLQ----------------R-DGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 267 v~d~~~Lp---------fpd~sFDlV~~s----~-~~l~~~~----------------d-~~~~L~ei~RvLkPGG~Lvi 315 (615)
..++...| .....||-|.|- . ..+...+ . .-.+|..-.++||+||.++.
T Consensus 215 ~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVY 294 (375)
T KOG2198|consen 215 NHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVY 294 (375)
T ss_pred cccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEE
Confidence 22222222 234569998871 1 0111111 1 12478889999999999999
Q ss_pred Ec
Q 007165 316 SS 317 (615)
Q Consensus 316 s~ 317 (615)
++
T Consensus 295 ST 296 (375)
T KOG2198|consen 295 ST 296 (375)
T ss_pred ec
Confidence 87
No 298
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=90.24 E-value=0.72 Score=44.97 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=69.1
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhcccccccccccccC-------CCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESF-------STYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~f-------stYprtyDl~Ha~ 528 (615)
.+|+|+.+|-|+++.++... .++..=.-|.. . + .|+--+..|..+.. .+-+.++|++=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 47999999999998776432 25554333321 0 0 12222223544321 0113578887765
Q ss_pred cc------ccc-cccCCCChhhhhhhhcccccCCcEEEEE----cC-hhHHHHHHHHHhhcCccceeeccccccCcCCCC
Q 007165 529 KV------FSE-IEERGCSFEDLLIEMDRMLRPEGFVIIR----DK-SSIINYIRKFITALKWDGWLSEVEPRIDALSSS 596 (615)
Q Consensus 529 ~~------fs~-~~~~~c~~~~i~~EmdRilRp~g~~iir----d~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 596 (615)
+. .+. .....+.++.+|-++-|+|+|||.+++- +. .+++.++++. + |++.+..... ....+
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~---~-~~~~~~~~~~---~~~~~ 178 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL---F-EKVKVTKPQA---SRKRS 178 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh---h-ceEEEeCCCC---CCccc
Confidence 42 110 0001123578999999999999999993 21 2445444442 2 4443222111 12235
Q ss_pred CceEEEEE
Q 007165 597 EERVLIAK 604 (615)
Q Consensus 597 ~e~~l~~~ 604 (615)
.|+.+||.
T Consensus 179 ~~~~~~~~ 186 (188)
T TIGR00438 179 AEVYIVAK 186 (188)
T ss_pred ceEEEEEe
Confidence 78999985
No 299
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=89.87 E-value=1.2 Score=48.38 Aligned_cols=107 Identities=17% Similarity=0.056 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc------------CCCcEEEEecCCCC-CCCCCCce
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER------------GIPSTLGVLGTKRL-PYPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er------------g~~~~~~v~d~~~L-pfpd~sFD 281 (615)
..++||-+|.|.|.-++.|.+.. ....+..+|+++.|+++++.. .+++.+...|+.++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 45789999999999999998752 123444456666677776522 12345555554332 22345899
Q ss_pred EEEecccccccccch-----HHHHHHHHhccCCCeEEEEEcCCCCCC
Q 007165 282 LAHCSRCRIDWLQRD-----GILLLELDRLLRPGGYFVYSSPEAYAH 323 (615)
Q Consensus 282 lV~~s~~~l~~~~d~-----~~~L~ei~RvLkPGG~Lvis~P~~~~~ 323 (615)
.|+.-. --.-.+.. .++..-+.|.|+++|.+++.....|..
T Consensus 368 ~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t 413 (508)
T COG4262 368 VVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT 413 (508)
T ss_pred EEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC
Confidence 998532 01111111 236777889999999999987666543
No 300
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=89.81 E-value=0.32 Score=49.70 Aligned_cols=116 Identities=19% Similarity=0.246 Sum_probs=64.7
Q ss_pred HhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccc--cccc
Q 007165 437 IGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLI--GTVH 509 (615)
Q Consensus 437 ~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----Gli--G~~h 509 (615)
.+.|++.+... +. ...+. .|+|+.+|-|-++..|...-----.|+-+|- ++-|.+.-+| |+. =..+
T Consensus 32 ~~~wr~~~~~~---~~--~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 32 DRRWRRKLIKL---LG--LRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp -----SHHHHH---HT----S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHHHHhc---cC--CCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 47899877643 22 22222 7999999999998888653211225666664 4777776554 332 1122
Q ss_pred cccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 510 dwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-=.|..+---.|||.+=....+-.+ ++....|-||=|+|||||.++|=|-
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeec
Confidence 2245544323899998765554422 4578899999999999999988653
No 301
>PTZ00146 fibrillarin; Provisional
Probab=89.75 E-value=1.1 Score=47.53 Aligned_cols=97 Identities=13% Similarity=0.224 Sum_probs=57.7
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhc-ccccccccccccCCCCC---Ccccee
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYP---RTYDLL 525 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~fstYp---rtyDl~ 525 (615)
|..+. +|+|..|+-|+|+..|.+. .|+-+-+-|....+-|.+.-.| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 45553 7999999999988777543 4666643332222344444333 4555566655431 122 356666
Q ss_pred cccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 526 HAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 526 Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
|+++.+. =+...+++|+.|+|+|+|.++|
T Consensus 207 -----~~Dva~p-dq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 207 -----FADVAQP-DQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred -----EEeCCCc-chHHHHHHHHHHhccCCCEEEE
Confidence 4433211 1234566799999999999999
No 302
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=89.71 E-value=0.97 Score=46.90 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=59.8
Q ss_pred eeeeeeccccchhHHhhhcCC-C-c-EEEEeccCCC-CCchhHHhhccc-cccc-ccccc-cCCCCCCccceeccccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-D-V-WVMNVAPVRM-SARLKIIYDRGL-IGTV-HDWCE-SFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~-v-wvmnvvp~~~-~~tL~~iy~RGl-iG~~-hdwce-~fstYprtyDl~Ha~~~fs 532 (615)
-.+|+|..+|-|.+++.|.+. + . . .+|+=+|- ++.+...-.|.- +... .|-.+ +|. ..+||+|.+ +|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~-~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~--~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITT-MQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIR--IYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccC-CeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEE--ecC
Confidence 356999999999999988642 1 1 1 24555553 466665544421 1111 12111 332 368999975 333
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEEcCh-hHHHHHHHHH
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS-SIINYIRKFI 574 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iird~~-~~~~~~~~~~ 574 (615)
...+-|+.|+|+|||.+|+.... .-+.+++.++
T Consensus 161 ---------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 161 ---------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred ---------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 12356899999999999987433 2344444443
No 303
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=89.62 E-value=11 Score=38.18 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=87.1
Q ss_pred ccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC
Q 007165 187 HFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP 262 (615)
Q Consensus 187 ~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~ 262 (615)
.|.+...+....+..-+.. + +-.++.+||=+|+.+|....++++- .+.++++++.... ..+..|.+|. +
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~----~-pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~-N 125 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKN----F-PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRP-N 125 (231)
T ss_pred eeCcchhHHHHHHHcCccc----C-CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCC-C
Confidence 3455556666555544331 1 1234578999999999888888742 5788999987664 4557787764 2
Q ss_pred cEEEEecCCCCC----CCCCCceEEEecccccccccch-HHHHHHHHhccCCCeEEEEEcCCCC-CCChhHHHHHHHHHH
Q 007165 263 STLGVLGTKRLP----YPSRSFELAHCSRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPEAY-AHDPENRRIWNAMYD 336 (615)
Q Consensus 263 ~~~~v~d~~~Lp----fpd~sFDlV~~s~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~P~~~-~~~~e~~~~w~~l~~ 336 (615)
+.-...|+. .| .-=...|+|++--+ .++. +-+..++..-||+||+++++....- .-..+..++++....
T Consensus 126 i~PIL~DA~-~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~ 200 (231)
T COG1889 126 IIPILEDAR-KPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE 200 (231)
T ss_pred ceeeecccC-CcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH
Confidence 333344543 22 11245898885431 2344 4477899999999998888653211 112223345553333
Q ss_pred HHhhcceEEEE
Q 007165 337 LLKSMCWKIVS 347 (615)
Q Consensus 337 La~~l~W~l~~ 347 (615)
-++.-.++...
T Consensus 201 kL~~~~f~i~e 211 (231)
T COG1889 201 KLEEGGFEILE 211 (231)
T ss_pred HHHhcCceeeE
Confidence 34444455443
No 304
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=89.48 E-value=0.37 Score=54.12 Aligned_cols=54 Identities=28% Similarity=0.485 Sum_probs=41.9
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHcCC-CcEEEEecCC
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALERGI-PSTLGVLGTK 271 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~erg~-~~~~~v~d~~ 271 (615)
..+||+-||||.++..++.. .|+|+++++.++..|. ..|+..|+ ++.|+++-++
T Consensus 385 k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~-~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE-KNAQINGISNATFIVGQAE 441 (534)
T ss_pred cEEEEEeecCCceehhhhccccceeeeecChhhcchhh-hcchhcCccceeeeecchh
Confidence 78999999999999999865 8999999888776665 44555565 5677777443
No 305
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=89.38 E-value=0.86 Score=49.20 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=62.1
Q ss_pred CCCCeEEEECCC-CchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 214 GNIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 214 ~~~~~VLDIGCG-tG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
.++.+|+=+|+| .|..+.+++.+ .+..+...+.++...+.|++.|....+.-.|.....--.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv----- 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV----- 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC-----
Confidence 345778888877 33666666653 2344444466777778899888765444323222221123499998443
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. ...+....+.||+||.+++..-+
T Consensus 238 -~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 -G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 44788889999999999998743
No 306
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=89.31 E-value=0.42 Score=48.46 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=68.1
Q ss_pred cccCCceeeeeeccccchhHHhhhcC-CC---cEEEEeccCCCCCchhHHhhc-ccccccccccccCCCCCCccceeccc
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKD-KD---VWVMNVAPVRMSARLKIIYDR-GLIGTVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~-~~---vwvmnvvp~~~~~tL~~iy~R-GliG~~hdwce~fstYprtyDl~Ha~ 528 (615)
...+..++.|+|...|.|.|++++.. .| +.|+ |-|..+..+-+. .+--+=| .-|.++|. ||++...
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~-----Dlp~v~~~~~~~~rv~~~~g---d~f~~~P~-~D~~~l~ 165 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVF-----DLPEVIEQAKEADRVEFVPG---DFFDPLPV-ADVYLLR 165 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEE-----E-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEE
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCCcceee-----ccHhhhhccccccccccccc---cHHhhhcc-ccceeee
Confidence 56788999999999999999999962 34 3443 334344444331 1111222 23578888 9999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCC--cEEEEEcCh
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPE--GFVIIRDKS 564 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~--g~~iird~~ 564 (615)
+++-.+... +...||--+=+-|+|| |.++|-|..
T Consensus 166 ~vLh~~~d~--~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 166 HVLHDWSDE--DCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SSGGGS-HH--HHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhhhcchH--HHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 998865543 4677888899999999 999998643
No 307
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=89.27 E-value=0.34 Score=48.20 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=52.7
Q ss_pred eeeeeccccchhHHhhhcC-----CCcEEEEeccCCCCCchhHHhhcccc---cccc-cccccCCCCCCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD-----KDVWVMNVAPVRMSARLKIIYDRGLI---GTVH-DWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~-----~~vwvmnvvp~~~~~tL~~iy~RGli---G~~h-dwce~fstYprtyDl~Ha~~~f 531 (615)
..|+|+.+|.|.+++.|.. ..|.-+-+.|.-..-.-.-+...|+- -+.| |-.+.+.. ..+||.|.+++.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 3699999999999877753 23454444443211011112233442 2222 44444433 3689999988765
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+ . =|+=|.|+|||.+++-
T Consensus 153 ~~~-------~---~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 STI-------P---SALVRQLKDGGVLVIP 172 (205)
T ss_pred chh-------h---HHHHHhcCcCcEEEEE
Confidence 422 2 2566899999999884
No 308
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.19 E-value=1.1 Score=44.66 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=54.8
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhch-------hHHHHHHHHHcCC-CcEEEEecCCCCC-------CC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV-------HENQIQFALERGI-PSTLGVLGTKRLP-------YP 276 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dl-------s~a~i~~A~erg~-~~~~~v~d~~~Lp-------fp 276 (615)
+..+|+|+=-|.|.|++-+... .-....+.+.+. .+.+...+++... +.+..-.+.-.++ .+
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 4578999999999999988754 111222333332 1122222222211 1111111111222 12
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
..++|.++... .+| .....++..++++.|||||.+++.+..
T Consensus 128 ~~~~yhdmh~k-~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 128 TAQNYHDMHNK-NIH-PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchhhhhhhcc-ccC-cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 33444444332 233 344577999999999999999997643
No 309
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=88.79 E-value=0.26 Score=44.68 Aligned_cols=38 Identities=21% Similarity=0.572 Sum_probs=28.2
Q ss_pred CceEEEeccccccccc----c--hHHHHHHHHhccCCCeEEEEEc
Q 007165 279 SFELAHCSRCRIDWLQ----R--DGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~----d--~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.||+|.|.. +.-|+. | ...+++.+.+.|+|||.|++.-
T Consensus 1 ~yDvilclS-VtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLS-VTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEE-eeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 489999876 555542 2 2469999999999999999954
No 310
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=88.69 E-value=1.3 Score=47.04 Aligned_cols=94 Identities=18% Similarity=0.320 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchH----HHHHhcCCCccccCChhchhHHHHHHHHHcCCC--cE
Q 007165 191 GADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASF----GAYLLSHDIIAMSLAPNDVHENQIQFALERGIP--ST 264 (615)
Q Consensus 191 ~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~----a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~--~~ 264 (615)
+...|+..+.+++.......+ ...++||||+|.... +..+.+=+++|.|+.+..+..|+....+..++. +.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~---~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIP---EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS------EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccccc---cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 456799999999875443211 246899999998733 222222255666666655555543333331343 44
Q ss_pred EEEecCC-----CCCCCCCCceEEEecc
Q 007165 265 LGVLGTK-----RLPYPSRSFELAHCSR 287 (615)
Q Consensus 265 ~~v~d~~-----~Lpfpd~sFDlV~~s~ 287 (615)
+...... .+..++..||+.+|+-
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred EEEcCCccccchhhhcccceeeEEecCC
Confidence 4333211 1222346899999875
No 311
>PRK11524 putative methyltransferase; Provisional
Probab=88.50 E-value=1.1 Score=46.84 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=34.6
Q ss_pred EEEEecCCCC--CCCCCCceEEEeccc-cc--c------------cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 264 TLGVLGTKRL--PYPSRSFELAHCSRC-RI--D------------WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 264 ~~~v~d~~~L--pfpd~sFDlV~~s~~-~l--~------------~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+..+|.... .+++++||+|++.-- .. . |..-....+.++.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 4555664442 356788999988421 00 0 11112468899999999999999864
No 312
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.38 E-value=0.58 Score=43.01 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=23.5
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchh
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVH 249 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls 249 (615)
++||+|||.|.++..++.. ++.+++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 4899999999999888753 3666666555443
No 313
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=88.29 E-value=0.57 Score=48.37 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=32.8
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
..+||+|+++.++... . +...++-|+=|+|||||.+++.|
T Consensus 144 ~~~fD~Vi~~~v~~~~-~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 144 DNSVDVIISNCVINLS-P---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CCceeEEEEcCcccCC-C---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 4699999998877632 2 36789999999999999999965
No 314
>PRK06922 hypothetical protein; Provisional
Probab=88.22 E-value=0.32 Score=56.55 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=60.8
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-CchhHHhhc----cc-ccccccccccCCC-C-CCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-ARLKIIYDR----GL-IGTVHDWCESFST-Y-PRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-~tL~~iy~R----Gl-iG~~hdwce~fst-Y-prtyDl~Ha~~~f 531 (615)
..|+|..+|.|.++.+|... |- .+|+-+|-. +.|...-.| |. +-+.+.=+..++. + |.+||++..+.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P~--~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETED--KRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 57999999999998777532 21 244444432 334333222 11 1112222333332 1 5789999877654
Q ss_pred cccc------cC---CCChhhhhhhhcccccCCcEEEEEcC
Q 007165 532 SEIE------ER---GCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 532 s~~~------~~---~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
-.+. .+ .-.+..+|-|+-|+|+|||.+||.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3221 11 12467889999999999999999984
No 315
>PRK14967 putative methyltransferase; Provisional
Probab=88.08 E-value=0.98 Score=45.38 Aligned_cols=117 Identities=16% Similarity=0.227 Sum_probs=67.1
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh----cccc--cccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD----RGLI--GTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~----RGli--G~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
-.|+|+.+|.|.++..+..... -+|+=++- +..+...-. .|+- =+-.|+.+.+. ..+||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 3699999999999888776432 13444442 344433222 2331 12236655443 368999998744331
Q ss_pred ccc-----------------CCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcCccc
Q 007165 534 IEE-----------------RGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALKWDG 581 (615)
Q Consensus 534 ~~~-----------------~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~w~~ 581 (615)
... ....+.+++-++-|+|+|||.+++= .+..-+.++.+.+++-.|+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~ 179 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDA 179 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCe
Confidence 100 0112566778899999999999972 22223445555555555544
No 316
>PRK04266 fibrillarin; Provisional
Probab=88.05 E-value=1.2 Score=45.25 Aligned_cols=136 Identities=15% Similarity=0.295 Sum_probs=67.9
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC----CcEEEEeccCCCCCchhHH----hhc-ccccccccccccC--CCCCCccc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK----DVWVMNVAPVRMSARLKII----YDR-GLIGTVHDWCESF--STYPRTYD 523 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~----~vwvmnvvp~~~~~tL~~i----y~R-GliG~~hdwce~f--stYprtyD 523 (615)
+..+. .|||..+|-|++...|.+. .|+-+-+-| .-|..+ -+| ++.-+..|=.++. ...+.++|
T Consensus 70 i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCC
Confidence 44443 5999999999999888653 355543333 222221 111 1222222322221 01134566
Q ss_pred eecccccccccccCCCChhhhhhhhcccccCCcEEEEE------c----ChhHHHHHHHHHhhcCccceeeccccccCcC
Q 007165 524 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR------D----KSSIINYIRKFITALKWDGWLSEVEPRIDAL 593 (615)
Q Consensus 524 l~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir------d----~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 593 (615)
.| |+.+... =....++-|+-|+|+|||.++|. | .....++..+.+.+-..+. +...+ -.|.
T Consensus 144 ~i-----~~d~~~p-~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~-i~~~~--l~p~ 214 (226)
T PRK04266 144 VI-----YQDVAQP-NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEI-LEVVD--LEPY 214 (226)
T ss_pred EE-----EECCCCh-hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeE-EEEEc--CCCC
Confidence 64 3322110 01123466999999999999992 2 2233334445665544544 12222 2233
Q ss_pred CCCCceEEEEEec
Q 007165 594 SSSEERVLIAKKK 606 (615)
Q Consensus 594 ~~~~e~~l~~~k~ 606 (615)
. ..+-.+|++|+
T Consensus 215 ~-~~h~~~v~~~~ 226 (226)
T PRK04266 215 H-KDHAAVVARKK 226 (226)
T ss_pred c-CCeEEEEEEcC
Confidence 2 24566777664
No 317
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=87.98 E-value=1.7 Score=45.48 Aligned_cols=136 Identities=15% Similarity=0.264 Sum_probs=84.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc---cc-ccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL---IG-TVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl---iG-~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|.|.++.+|... |.+ +|+=++- +..|.+.-.. |+ += +-.||.+++.. -.||+|=++-=
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~--~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNA--EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 46999999999999998753 322 4555553 3455444332 33 11 23588887632 37999876521
Q ss_pred ccc------cc--cCCC-------------ChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHh-hcCccceeecccc
Q 007165 531 FSE------IE--ERGC-------------SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFIT-ALKWDGWLSEVEP 588 (615)
Q Consensus 531 fs~------~~--~~~c-------------~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~-~~~w~~~~~~~~~ 588 (615)
+.. +. .+.. .+..|+-+.-+.|+|||++++--...--+.+++++. ...|.. +.+.
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~-~~~~-- 268 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYD-VENG-- 268 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCce-eEEe--
Confidence 110 00 0000 245678889999999999999877667777888776 466753 1221
Q ss_pred ccCcCCCCCceEEEEEec
Q 007165 589 RIDALSSSEERVLIAKKK 606 (615)
Q Consensus 589 ~~~~~~~~~e~~l~~~k~ 606 (615)
.| ..+.++++++++.
T Consensus 269 ~D---~~g~~R~~~~~~~ 283 (284)
T TIGR00536 269 RD---LNGKERVVLGFYH 283 (284)
T ss_pred cC---CCCCceEEEEEec
Confidence 22 3568999998753
No 318
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=87.81 E-value=1.4 Score=44.20 Aligned_cols=128 Identities=16% Similarity=0.187 Sum_probs=67.8
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHhhcccccccccccc---------cCCCCCCccceec
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCE---------SFSTYPRTYDLLH 526 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce---------~fstYprtyDl~H 526 (615)
..|+|..||-|+|+..|.+. .|-.+-.-|. +.+ .|..=+-.|..+ .|. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---~~~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---DPI-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---cCC-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 36999999999997655432 2322222221 111 122111122222 122 35799998
Q ss_pred ccccccccccC-------CCChhhhhhhhcccccCCcEEEEE-----cChhHHHHHHHHHhhcCccceeeccccccCcCC
Q 007165 527 AWKVFSEIEER-------GCSFEDLLIEMDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 594 (615)
Q Consensus 527 a~~~fs~~~~~-------~c~~~~i~~EmdRilRp~g~~iir-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 594 (615)
++......... -...+++|-|+=|+|+|||.+++- +..+++.++++.....+. .-+..+ -.
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~------~Kp~ss-r~ 195 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV------RKPDSS-RA 195 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE------ECCccc-cc
Confidence 76532210000 011367899999999999999994 334455555444433333 221221 22
Q ss_pred CCCceEEEEEe
Q 007165 595 SSEERVLIAKK 605 (615)
Q Consensus 595 ~~~e~~l~~~k 605 (615)
.+.|..+||..
T Consensus 196 ~s~e~~~~~~~ 206 (209)
T PRK11188 196 RSREVYIVATG 206 (209)
T ss_pred cCceeEEEeec
Confidence 46788888864
No 319
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=87.58 E-value=2.2 Score=47.07 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCCCeEEEECCCCchHHHHHh---c-C-CCccccCChhchhHHHHHHHHHcCCCcE-EEEecCCCCC---CCCCCceEE
Q 007165 213 GGNIRNVLDVGCGVASFGAYLL---S-H-DIIAMSLAPNDVHENQIQFALERGIPST-LGVLGTKRLP---YPSRSFELA 283 (615)
Q Consensus 213 ~~~~~~VLDIGCGtG~~a~~L~---~-~-~V~gvdis~~Dls~a~i~~A~erg~~~~-~~v~d~~~Lp---fpd~sFDlV 283 (615)
.+++.+|||+.+..|.=+.+++ + . -|.+.|....-+. ...+.+...|+... ....|...+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3566899999999995444443 2 2 3344443332221 22233444566543 3444555544 454 89988
Q ss_pred Ee----ccccccc-----------------ccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 284 HC----SRCRIDW-----------------LQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 284 ~~----s~~~l~~-----------------~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
.. +...+-+ ..-..++|..+..+++|||+|+.++=.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 73 3211111 111245888999999999999998743
No 320
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=87.51 E-value=0.71 Score=45.48 Aligned_cols=116 Identities=11% Similarity=0.176 Sum_probs=69.4
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhH----HhhcccccccccccccCC----CCCC-ccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKI----IYDRGLIGTVHDWCESFS----TYPR-TYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~----iy~RGliG~~hdwce~fs----tYpr-tyDl~Ha~~ 529 (615)
+-|+|..+|-|.|+.+|... |-. ||+=++- +.-+-. +-..|+-.+..=-|.+.. .+|- ++|.++.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~--~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDK--NFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCC--CEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999888744 321 4444443 222222 223344222111122211 1343 888887652
Q ss_pred ccccc------ccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhcC-cc
Q 007165 530 VFSEI------EERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITALK-WD 580 (615)
Q Consensus 530 ~fs~~------~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~~-w~ 580 (615)
+.- .++|.....++-|+-|+|+|||.+++. |..+..+.+.+.+...- |+
T Consensus 96 --pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~ 152 (194)
T TIGR00091 96 --PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFE 152 (194)
T ss_pred --CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeE
Confidence 211 134566788999999999999999987 66666776666665533 44
No 321
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=87.39 E-value=1.1 Score=42.50 Aligned_cols=74 Identities=23% Similarity=0.288 Sum_probs=43.8
Q ss_pred CcEEEEecCCCCC-C-CCCCceEEEecccccccccc--------h---HHHHHHHHhccCCCeEEEEEcCCCCCCChhHH
Q 007165 262 PSTLGVLGTKRLP-Y-PSRSFELAHCSRCRIDWLQR--------D---GILLLELDRLLRPGGYFVYSSPEAYAHDPENR 328 (615)
Q Consensus 262 ~~~~~v~d~~~Lp-f-pd~sFDlV~~s~~~l~~~~d--------~---~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~ 328 (615)
++.+...+=+.+. + +++++|+|+.+ |.|+|. + -.++..+.++|+|||.++++.-.- -+...
T Consensus 27 ~v~li~~sHe~l~~~i~~~~v~~~iFN---LGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~G---H~gG~ 100 (140)
T PF06962_consen 27 RVTLILDSHENLDEYIPEGPVDAAIFN---LGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPG---HPGGK 100 (140)
T ss_dssp GEEEEES-GGGGGGT--S--EEEEEEE---ESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--S---TCHHH
T ss_pred cEEEEECCHHHHHhhCccCCcCEEEEE---CCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCC---CCCCH
Confidence 3666665544443 2 33589999854 445542 1 248899999999999999987332 23334
Q ss_pred HHHHHHHHHHhhc
Q 007165 329 RIWNAMYDLLKSM 341 (615)
Q Consensus 329 ~~w~~l~~La~~l 341 (615)
+..+.+..+++.+
T Consensus 101 eE~~av~~~~~~L 113 (140)
T PF06962_consen 101 EESEAVEEFLASL 113 (140)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhC
Confidence 4556667777664
No 322
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.82 E-value=0.67 Score=46.08 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=56.1
Q ss_pred eeeeeccccchhHHhhhcCC-C-cEEEEeccCCC-CCchhHHhhc----cc---ccccccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRM-SARLKIIYDR----GL---IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~-~~tL~~iy~R----Gl---iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|+.+|-|.++..+... + .. +|+-++- ++.+...-++ |+ +-+.+.=.+.++.=+.+||+|.++..
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTG--EVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 35999999999998776432 1 11 2333332 2222222221 11 11222111122222468999998766
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
+- ...+...+|-++-++|+|||.+|+-|
T Consensus 131 l~----~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LR----NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cc----cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 54 23468889999999999999999854
No 323
>PRK05785 hypothetical protein; Provisional
Probab=86.32 E-value=1.3 Score=44.81 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCC
Q 007165 438 GIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFS 516 (615)
Q Consensus 438 ~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fs 516 (615)
..|++.+-...... +.. -..|+|..+|-|-++..|.+.- --+|+=+|- ++-|.+--+++ ...+.-.|.++
T Consensus 35 ~~wr~~~~~~l~~~---~~~--~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKY---CGR--PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHh---cCC--CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 56877654321111 112 2579999999999998887652 126666764 35555544442 22334445544
Q ss_pred CCCCccceecccccccccccCCCChhhhhhhhcccccCCc
Q 007165 517 TYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEG 556 (615)
Q Consensus 517 tYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g 556 (615)
-=..+||++-+...+-. --+.+..+-||-|+|||.+
T Consensus 106 ~~d~sfD~v~~~~~l~~----~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 FRDKSFDVVMSSFALHA----SDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCEEEEEecChhhc----cCCHHHHHHHHHHHhcCce
Confidence 33489999999775542 2358899999999999953
No 324
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=86.09 E-value=0.65 Score=44.89 Aligned_cols=142 Identities=18% Similarity=0.257 Sum_probs=66.7
Q ss_pred ccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-----CCchhHHhhcccc---cccccccccCCCCCCccceec
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-----SARLKIIYDRGLI---GTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-----~~tL~~iy~RGli---G~~hdwce~fstYprtyDl~H 526 (615)
+..+.-.+|+|..|.=|||..++.........|+-+|- ..-...| +|=| .+..+=.+.++.=.+.+||+-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 34557799999999999999999876522233333331 1111111 2211 001111122221126899999
Q ss_pred cccccccccc----CCCChhhhhhh---hcccccCCcEEEEE-----cChhHHHHHHHHHhhcCccceeeccccccCcCC
Q 007165 527 AWKVFSEIEE----RGCSFEDLLIE---MDRMLRPEGFVIIR-----DKSSIINYIRKFITALKWDGWLSEVEPRIDALS 594 (615)
Q Consensus 527 a~~~fs~~~~----~~c~~~~i~~E---mdRilRp~g~~iir-----d~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 594 (615)
+|+-+..... .-=++.-++-+ +-..|+|||.+|+. +..+++..++..-...++- .+... -.
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~------Kp~~s-r~ 169 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV------KPPSS-RS 169 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE------E-TTS-BT
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE------ECcCC-CC
Confidence 9995441100 00011111112 23559999988873 3346666666644444332 22211 12
Q ss_pred CCCceEEEEEe
Q 007165 595 SSEERVLIAKK 605 (615)
Q Consensus 595 ~~~e~~l~~~k 605 (615)
.+.|.-|||.+
T Consensus 170 ~s~E~Ylv~~~ 180 (181)
T PF01728_consen 170 ESSEEYLVCRG 180 (181)
T ss_dssp TCBEEEEESEE
T ss_pred CccEEEEEEcC
Confidence 45788888864
No 325
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=86.06 E-value=0.57 Score=46.93 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=49.6
Q ss_pred eeeeeccccchhHHhhhcCC-----CcEEEEeccCCCCCchhHHh----hcccccccccccccCCCCC--Cccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-----DVWVMNVAPVRMSARLKIIY----DRGLIGTVHDWCESFSTYP--RTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-----~vwvmnvvp~~~~~tL~~iy----~RGliG~~hdwce~fstYp--rtyDl~Ha~~ 529 (615)
..|+|+.+|.|.+++.|... .|.-+-+.|.- +.+.- .-|+-.+---...++.++| ..||+|+..+
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~----~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPEL----AEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHH----HHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 47999999999999877532 45544443322 11111 1122111111223333443 6899998766
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+. ++.-++-+.|+|||.+++-
T Consensus 154 ~~~----------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP----------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc----------cchHHHHHhhCCCcEEEEE
Confidence 443 2333555689999999884
No 326
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=85.70 E-value=0.58 Score=46.75 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=50.7
Q ss_pred eeeeeccccchhHHhhhcCC--C---cEEEEeccCCCCCchhHHhhccc--cc-ccccccccCCCCCCccceeccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK--D---VWVMNVAPVRMSARLKIIYDRGL--IG-TVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~---vwvmnvvp~~~~~tL~~iy~RGl--iG-~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
..|+|+.+|.|.+++.|... + |.-.-.-|.-....-.-+-+.|+ += +..|..+.+.. ...||+|+.++...
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVTAAGP 157 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEcCCcc
Confidence 36999999999999988643 2 43333222211111111222343 11 22344443333 25899999776433
Q ss_pred ccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 533 EIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 533 ~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.+.-++=+.|+|||.+|+-
T Consensus 158 ----------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 158 ----------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred ----------cccHHHHHhcCcCcEEEEE
Confidence 2333456789999999883
No 327
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=85.64 E-value=0.68 Score=44.24 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=36.6
Q ss_pred cccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 512 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 512 ce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
++.++.-+.+||++=+...+..+ -+....|-||-|+|+|||.++|-|-.
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 45555445799999776555433 24788999999999999999988654
No 328
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=85.02 E-value=5 Score=40.01 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=51.0
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEe-cCCC--------CCCCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVL-GTKR--------LPYPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~-d~~~--------Lpfpd~sF 280 (615)
+..+|||+||..|+++.-..++ .|.|+|+-....- .|. .+..+ |..+ -.+|....
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~---------~Ga--~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP---------EGA--TIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC---------CCc--ccccccccCCHHHHHHHHHhCCCCcc
Confidence 4578999999999998876644 3555655332211 111 11111 2111 01356788
Q ss_pred eEEEeccccccc----ccch-------HHHHHHHHhccCCCeEEEEEcCC
Q 007165 281 ELAHCSRCRIDW----LQRD-------GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 281 DlV~~s~~~l~~----~~d~-------~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
|+|++-. +-.- +.|- ..++.-....++|+|.|+.-...
T Consensus 138 dvVlSDM-apnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 138 DVVLSDM-APNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred cEEEecc-CCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 9998532 1111 0111 12444555678899999987643
No 329
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.00 E-value=0.62 Score=45.14 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCceEEEeccccccccc--------ch---HHHHHHHHhccCCCeEEEEEcCCC
Q 007165 278 RSFELAHCSRCRIDWLQ--------RD---GILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 278 ~sFDlV~~s~~~l~~~~--------d~---~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
++||.+.|.. +++|.. |+ .+.+.++.++|||||.|+++.|--
T Consensus 62 ~~fD~~as~~-siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 62 GSFDFAASFS-SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred ccchhhheec-hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 7799998766 576642 22 458999999999999999999854
No 330
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=84.75 E-value=0.94 Score=49.00 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=70.9
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc---ccccccccccCCCCCCccceecccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL---IGTVHDWCESFSTYPRTYDLLHAWKVFSEIE 535 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl---iG~~hdwce~fstYprtyDl~Ha~~~fs~~~ 535 (615)
..|+|+.+|-|.++.+|.+. +- -+|+=+|. ++.|...-++.- +-+.+.-.|.++--..+||++-+.+.+..+.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 46999999999988777532 21 13333342 344444433310 1222322333333347899998887766332
Q ss_pred cCCCChhhhhhhhcccccCCcEEEEEcCh-----------------hHHHHHHHHHhhcCccc
Q 007165 536 ERGCSFEDLLIEMDRMLRPEGFVIIRDKS-----------------SIINYIRKFITALKWDG 581 (615)
Q Consensus 536 ~~~c~~~~i~~EmdRilRp~g~~iird~~-----------------~~~~~~~~~~~~~~w~~ 581 (615)
+...++-|+-|+|+|||.++|-+.. ...+++.+++++..++.
T Consensus 193 ----d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ----DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3567899999999999999875421 12466777777777764
No 331
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=84.70 E-value=0.97 Score=47.62 Aligned_cols=104 Identities=13% Similarity=0.295 Sum_probs=63.6
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHH----hhcccccccccccc-cC-CCCCCccceecc
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKII----YDRGLIGTVHDWCE-SF-STYPRTYDLLHA 527 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~i----y~RGliG~~hdwce-~f-stYprtyDl~Ha 527 (615)
++....+.|+|+.+|.|.++.++.+. |-. +|+-.|-|..+.++ -+.|+-+-++--+- .| ..+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34456679999999999999888644 432 34444444444443 33465432222222 22 2455 4798765
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEEEEcC
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK 563 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~ 563 (615)
.+++-..... ....|+-++-|.|+|||.++|-|.
T Consensus 222 ~~~lh~~~~~--~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 222 CRILYSANEQ--LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EhhhhcCChH--HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5554322111 235688899999999999999863
No 332
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=84.38 E-value=1.2 Score=47.35 Aligned_cols=112 Identities=18% Similarity=0.298 Sum_probs=68.3
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHh----hccc---cccc-ccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL---IGTV-HDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy----~RGl---iG~~-hdwce~fstYprtyDl~Ha~~~ 530 (615)
.+|+|+.+|.|.++.+|... |. .+|+-++- +..|.+.- ..|+ |-++ -|+-+.++ +.+||+|-++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 47999999999999998743 43 34566664 35555432 2344 2223 25555443 358999998632
Q ss_pred ccc------cc--------------cCCC-ChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhc
Q 007165 531 FSE------IE--------------ERGC-SFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITAL 577 (615)
Q Consensus 531 fs~------~~--------------~~~c-~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~ 577 (615)
+.. +. .++. -...|+-+.-+.|+|||.+++--..+ ..+++++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 210 00 0000 12577888999999999999854333 44577776643
No 333
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.79 E-value=3 Score=42.76 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc-----CCC-
Q 007165 189 HDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER-----GIP- 262 (615)
Q Consensus 189 ~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er-----g~~- 262 (615)
-++...|+..++++|....+.+. ++..++||||.|.-- .-.|.+.+-.+.++++.|++...++.|+.. +..
T Consensus 54 vPgRAdYih~laDLL~s~~g~~~--~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSGQIP--GKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCCCCC--cCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 35678899999999987766555 345689999877542 223444444455555555554444443321 222
Q ss_pred -cEEEEecCCC--CC---CCCCCceEEEecccccc
Q 007165 263 -STLGVLGTKR--LP---YPSRSFELAHCSRCRID 291 (615)
Q Consensus 263 -~~~~v~d~~~--Lp---fpd~sFDlV~~s~~~l~ 291 (615)
+.+....-.+ ++ -..+.||++.|+-- +|
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPP-Fh 164 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPP-FH 164 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCC-cc
Confidence 2222221111 11 12578999999873 44
No 334
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=83.72 E-value=1.4 Score=45.34 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=72.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----cccccccccccccCCC-CCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGLIGTVHDWCESFST-YPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGliG~~hdwce~fst-YprtyDl~Ha~~~fs~ 533 (615)
.+|+|+.+|.|.++-+|... +- .+|+=++. +..+...-+ -|+--+-.|+.+.++. ....||+|=++=-|..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 36999999999999887632 32 13333442 234333221 1221122355544321 2346999877644321
Q ss_pred c------c------cCCCC----------hhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccce
Q 007165 534 I------E------ERGCS----------FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 534 ~------~------~~~c~----------~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~ 582 (615)
. . ..+.. +.+|+-...++|+|||.+++-=..+-..+|..++....|+..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIAR 236 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCce
Confidence 0 0 00111 347777888999999999987666667889999998888874
No 335
>PRK04457 spermidine synthase; Provisional
Probab=83.16 E-value=5.3 Score=41.49 Aligned_cols=138 Identities=11% Similarity=0.137 Sum_probs=73.7
Q ss_pred CceeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc-ccc------ccc-ccccccCCCCCCccceecc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR-GLI------GTV-HDWCESFSTYPRTYDLLHA 527 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R-Gli------G~~-hdwce~fstYprtyDl~Ha 527 (615)
..-++|+|+.+|-|.++..|... |. +.|+=++- |..+.+.-+. ++- -+. -|-=+-+.+.|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 45678999999999999877533 31 22333332 3444443332 111 111 1211223445778999965
Q ss_pred cccccccc-cCCCChhhhhhhhcccccCCcEEEE---EcChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEEE
Q 007165 528 WKVFSEIE-ERGCSFEDLLIEMDRMLRPEGFVII---RDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIA 603 (615)
Q Consensus 528 ~~~fs~~~-~~~c~~~~i~~EmdRilRp~g~~ii---rd~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~ 603 (615)
+. |.... .......+++-++=++|+|||.++| ..+...-..++.+...+.-.+ ..+..+ .+.+.|+++
T Consensus 143 D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~--~~~~~~-----~~~N~v~~a 214 (262)
T PRK04457 143 DG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRV--LELPAE-----SHGNVAVFA 214 (262)
T ss_pred eC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcE--EEEecC-----CCccEEEEE
Confidence 52 43211 1112346888999999999999998 233333333444433333222 122111 223578888
Q ss_pred Ee
Q 007165 604 KK 605 (615)
Q Consensus 604 ~k 605 (615)
.|
T Consensus 215 ~~ 216 (262)
T PRK04457 215 FK 216 (262)
T ss_pred EC
Confidence 77
No 336
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=82.83 E-value=10 Score=36.83 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=67.8
Q ss_pred ECCCCchHHHHHhcC-----CCccccCChhch-------hHHHHHHHHHcCCCcEEEEecCCCCC----CCCCCceEEEe
Q 007165 222 VGCGVASFGAYLLSH-----DIIAMSLAPNDV-------HENQIQFALERGIPSTLGVLGTKRLP----YPSRSFELAHC 285 (615)
Q Consensus 222 IGCGtG~~a~~L~~~-----~V~gvdis~~Dl-------s~a~i~~A~erg~~~~~~v~d~~~Lp----fpd~sFDlV~~ 285 (615)
||=|.=+|+..|+.. ++++.++...+. ....++..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 555666788877754 344444332221 112223334556655544 4555554 35688999985
Q ss_pred ccccccccc------c---------hHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 286 SRCRIDWLQ------R---------DGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 286 s~~~l~~~~------d---------~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
++ +|.. . ...++..+.++|+++|.+.++.-.... ...|+ ++.+++..++.+..
T Consensus 82 NF---PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p-----y~~W~-i~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 82 NF---PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP-----YDSWN-IEELAAEAGLVLVR 149 (166)
T ss_pred eC---CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC-----Ccccc-HHHHHHhcCCEEEE
Confidence 53 3433 0 134888999999999999998744311 12355 56888887776654
No 337
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=81.85 E-value=1.4 Score=41.34 Aligned_cols=96 Identities=19% Similarity=0.355 Sum_probs=60.3
Q ss_pred eeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhh----cccc--ccc-ccccccCCC-CCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYD----RGLI--GTV-HDWCESFST-YPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~----RGli--G~~-hdwce~fst-YprtyDl~Ha~ 528 (615)
-+|+|+.+|.|-+.-.|.+ ...=|+.| |- ++-+...-. .|+- =.+ .|.=+ ++. |+..||+|.++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 3699999999999888873 12223332 32 222222222 2431 111 12212 221 45889999999
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
++|... .+...++-+|=|.|+|+|.+|+.+-.
T Consensus 81 ~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 988522 35778899999999999999999877
No 338
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=81.82 E-value=6.4 Score=40.79 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=29.8
Q ss_pred ceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
||+|+++.+ +......+.++.-+...|..+|.+++..+
T Consensus 163 ~DlilasDv-vy~~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 163 FDLILASDV-VYEEESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred ccEEEEeee-eecCCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 999999996 44455667788889999999996666654
No 339
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=80.34 E-value=6.2 Score=42.81 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=58.5
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCC-C-----CC-CCCCceEEEe
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKR-L-----PY-PSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~-L-----pf-pd~sFDlV~~ 285 (615)
+..+||.+|||. |..+..+++.. +. .+...+.++...+.+++.+. ..+......+ + .+ ....+|+|+-
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~--g~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLL--GAERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 346799999987 77777776541 22 23333455666777777631 2222111110 1 11 2246998875
Q ss_pred cccc--------------cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 286 SRCR--------------IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 286 s~~~--------------l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.-.. ++-..+....+.++.+.|+|||.+++...
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 3210 01113445688999999999999998753
No 340
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=79.59 E-value=4.6 Score=35.55 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=54.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHH----hhcccc--ccc-cc--ccccCCCCCCccceecccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKII----YDRGLI--GTV-HD--WCESFSTYPRTYDLLHAWK 529 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~i----y~RGli--G~~-hd--wce~fstYprtyDl~Ha~~ 529 (615)
..|+|..+|.|.++..+... |- .+|+-++- +..+... -..|+- -+. .| |+.. .-+.+||.+=..+
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 48999999999999988653 32 34555553 2333332 122321 111 11 3322 2235788875544
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+ .+..++-++-|.|+|||++++-
T Consensus 97 ~~~-------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SGG-------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cch-------hHHHHHHHHHHHcCCCCEEEEE
Confidence 222 2568899999999999999973
No 341
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=79.56 E-value=1.7 Score=44.73 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=74.7
Q ss_pred HhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhcccc-ccc-----c
Q 007165 437 IGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLI-GTV-----H 509 (615)
Q Consensus 437 ~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~RGli-G~~-----h 509 (615)
...|++..-. .+. +. .=-+|+|..+|-|=+|..|.+.-- --.|+=+| +++-|.+--+|--= |.. +
T Consensus 36 ~~~Wr~~~i~---~~~--~~--~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~ 107 (238)
T COG2226 36 HRLWRRALIS---LLG--IK--PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVV 107 (238)
T ss_pred hHHHHHHHHH---hhC--CC--CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEE
Confidence 4788886652 222 12 334799999999999999975421 33444455 34777776666542 211 2
Q ss_pred cccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 510 dwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
-==|..+---.|+|++=.+.-+-... ++...|=||=|+|+|||.+++=|..
T Consensus 108 ~dAe~LPf~D~sFD~vt~~fglrnv~----d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 108 GDAENLPFPDNSFDAVTISFGLRNVT----DIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred echhhCCCCCCccCEEEeeehhhcCC----CHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 22233343348999987766555332 4889999999999999988876543
No 342
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=79.44 E-value=26 Score=36.21 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCc-hHHHHHh--cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCC-CCCC-CCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGVA-SFGAYLL--SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK-RLPY-PSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGtG-~~a~~L~--~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~-~Lpf-pd~sFDlV~~s~~~ 289 (615)
.+++||=||=.-- +++..|. .++|+.+|+...-+.-- .+.|.+.|+++.....|.. .+|- -.++||++++--
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI-~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFI-NRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHH-HHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHH-HHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 4578999996655 4444443 34677887776655332 2567778999888888853 3441 138999999643
Q ss_pred ccccc-chHHHHHHHHhccCCCe-EEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEE
Q 007165 290 IDWLQ-RDGILLLELDRLLRPGG-YFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVS 347 (615)
Q Consensus 290 l~~~~-d~~~~L~ei~RvLkPGG-~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~ 347 (615)
.|.. -...++.+....||.-| ..+++-. ..+.....|..++..+..++..+..
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~----~~~~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYFGFT----HKEASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-----TTT--HHHHHHHHHHHHTS--EEEE
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEEEEe----cCcCcHHHHHHHHHHHHHCCcCHHH
Confidence 2332 33558888888998655 4333321 1222346788888888888776543
No 343
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=79.31 E-value=2.4 Score=42.12 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=49.9
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc----cc--ccccccccccCCCCC--Cccceeccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR----GL--IGTVHDWCESFSTYP--RTYDLLHAWKV 530 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R----Gl--iG~~hdwce~fstYp--rtyDl~Ha~~~ 530 (615)
-..|+|..+|.|.+++.|.... - .|+=++-. +-+...-++ |+ +-+.+. ..+.++| .+||+|..+..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~-~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV-R--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh-C--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC
Confidence 3579999999999988765431 1 34434322 222222221 33 112221 1234444 58999988765
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+.. +.-++-+.|+|||.+++-
T Consensus 154 ~~~----------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 APE----------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred chh----------hhHHHHHhcCCCcEEEEE
Confidence 442 233456889999999874
No 344
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.83 E-value=7.1 Score=44.58 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCCchHHH-HHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-----------CC-------
Q 007165 214 GNIRNVLDVGCGVASFGA-YLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----------LP------- 274 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~-~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-----------Lp------- 274 (615)
.++.+|+=+|||.-..+. ..+.. .|.++...|.++...+.+++.|.. +...+..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~--lGA~V~a~D~~~~rle~aeslGA~--~v~i~~~e~~~~~~gya~~~s~~~~~~~ 238 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGS--LGAIVRAFDTRPEVAEQVESMGAE--FLELDFEEEGGSGDGYAKVMSEEFIKAE 238 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCe--EEEeccccccccccchhhhcchhHHHHH
Confidence 356899999999765443 33332 233455557777777888887654 22111110 10
Q ss_pred ---CCC--CCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 275 ---YPS--RSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 275 ---fpd--~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+.+ +.+|+|+..- .....+.+..+.+++.+.+||||.++...
T Consensus 239 ~~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 239 MALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 011 4699999654 23322334444699999999999998765
No 345
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.67 E-value=2.4 Score=43.37 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=63.9
Q ss_pred CCeEEEECCCCchHHHHHhcC-------------CCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCC-------
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-------------DIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLP------- 274 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-------------~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lp------- 274 (615)
.++|+|+.+..|+|+..|.++ .++++|+-+.- .++ +.-.++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------------ccCceEEeecccCCHhHHHHHHH
Confidence 578999999999999888743 13344332211 111 233445543321
Q ss_pred -CCCCCceEEEeccc----ccccccch------HHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhc
Q 007165 275 -YPSRSFELAHCSRC----RIDWLQRD------GILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSM 341 (615)
Q Consensus 275 -fpd~sFDlV~~s~~----~l~~~~d~------~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l 341 (615)
|....-|+|+|-.+ .+|-+... -.+|.-...+|||||.|+--. .+.....-.+..++.+.++.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~kv 183 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKKV 183 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhce
Confidence 44567899998542 24433322 235667789999999998532 12222223566667776664
No 346
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=77.98 E-value=8.2 Score=40.59 Aligned_cols=152 Identities=18% Similarity=0.270 Sum_probs=93.9
Q ss_pred hhHhhHHHHHHHHHHhhhccccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhHH----hhccc---c
Q 007165 435 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKII----YDRGL---I 505 (615)
Q Consensus 435 ~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~i----y~RGl---i 505 (615)
.||+.+-+.+- ..+. .... +|+||.+|-|--|.||... |. .+|+=+| .+.-|.+. -.-|| +
T Consensus 94 ~dTe~Lve~~l---~~~~---~~~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~ 163 (280)
T COG2890 94 PDTELLVEAAL---ALLL---QLDK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVRVL 163 (280)
T ss_pred CchHHHHHHHH---Hhhh---hcCC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCccEE
Confidence 47888877765 1121 1122 9999999999999999744 54 4666666 34555442 23343 2
Q ss_pred cccccccccCCCCCCccceecccccccc------------------cccCCC---ChhhhhhhhcccccCCcEEEEEcCh
Q 007165 506 GTVHDWCESFSTYPRTYDLLHAWKVFSE------------------IEERGC---SFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 506 G~~hdwce~fstYprtyDl~Ha~~~fs~------------------~~~~~c---~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
-+..||=++.+ -+||+|=++==+-. +-.... -+..|+-+..++|+|+|++++.-..
T Consensus 164 ~~~~dlf~~~~---~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 164 VVQSDLFEPLR---GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred EEeeecccccC---CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 33335555544 49999865321100 101111 2445777899999999999999888
Q ss_pred hHHHHHHHHHhhcCc-cceeeccccccCcCCCCCceEEEEEe
Q 007165 565 SIINYIRKFITALKW-DGWLSEVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 565 ~~~~~~~~~~~~~~w-~~~~~~~~~~~~~~~~~~e~~l~~~k 605 (615)
.-.++|+++.....+ .. +.+. .+ ..+.+++.++++
T Consensus 241 ~q~~~v~~~~~~~~~~~~-v~~~--~d---~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEAVKALFEDTGFFEI-VETL--KD---LFGRDRVVLAKL 276 (280)
T ss_pred CcHHHHHHHHHhcCCceE-EEEE--ec---CCCceEEEEEEe
Confidence 888899999998885 21 1111 22 245677777664
No 347
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=77.67 E-value=3.4 Score=43.39 Aligned_cols=115 Identities=17% Similarity=0.310 Sum_probs=69.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhh----ccc---cccc-ccccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYD----RGL---IGTV-HDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~----RGl---iG~~-hdwce~fstYprtyDl~Ha~~~ 530 (615)
.+|+|+.+|.|.++.+|... |-+ +|+-++- +..|.+.-+ .|+ |-++ -|+-+.++ +.+||+|=++-=
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~--~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPP 198 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEA--EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPP 198 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCC
Confidence 47999999999999999753 322 4555553 345544332 254 2222 24434442 357999987622
Q ss_pred ccc------ccc--------------CCCC-hhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCcc
Q 007165 531 FSE------IEE--------------RGCS-FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWD 580 (615)
Q Consensus 531 fs~------~~~--------------~~c~-~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~ 580 (615)
+.. +.. ++.. ...|+-+.-+.|+|||.+++--.... +++++++....|.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFT 268 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCc
Confidence 210 100 0111 25678889999999999998654444 6888888765443
No 348
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=76.53 E-value=11 Score=42.17 Aligned_cols=137 Identities=15% Similarity=0.200 Sum_probs=81.1
Q ss_pred eeeeccccchhHHhhhcC-CCcEEEEeccCCC-CCchhHHhh----ccc-cc-ccccccccCCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKD-KDVWVMNVAPVRM-SARLKIIYD----RGL-IG-TVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~-~~vwvmnvvp~~~-~~tL~~iy~----RGl-iG-~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
+|+|+.+|-|.++.+|.. .|-+ +|+=+|- +..|.+.-+ .|+ +- +-.||.+....-..+||+|-++-=+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a--~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDA--FVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 799999999999988764 3332 3444443 344443322 232 21 224665531101236999988654421
Q ss_pred cc--------------------cCCCC-hhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceeeccccccCc
Q 007165 534 IE--------------------ERGCS-FEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLSEVEPRIDA 592 (615)
Q Consensus 534 ~~--------------------~~~c~-~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 592 (615)
.. .++.. +..|+-+.-+.|+|||++++-=..+--+++++++....|+. +.+. .
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~-v~v~--k--- 405 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSG-VETL--P--- 405 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcE-EEEE--E---
Confidence 00 01000 33566667789999999988555566788999998888864 2221 1
Q ss_pred CCCCCceEEEEEec
Q 007165 593 LSSSEERVLIAKKK 606 (615)
Q Consensus 593 ~~~~~e~~l~~~k~ 606 (615)
.-.+.++++++++.
T Consensus 406 Dl~G~dR~v~~~~~ 419 (423)
T PRK14966 406 DLAGLDRVTLGKYM 419 (423)
T ss_pred cCCCCcEEEEEEEh
Confidence 13568999998753
No 349
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=76.44 E-value=3 Score=40.14 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=67.0
Q ss_pred eeeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHh----hccc---ccccccccccCCCCCCccceeccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIY----DRGL---IGTVHDWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy----~RGl---iG~~hdwce~fstYprtyDl~Ha~~~ 530 (615)
-.+|+|+.+|.|-.+.+|... |-.. |+=++- ++.+.... .-|+ --+.+|+.+++. +..||+|=++-=
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 346999999999888877643 4433 222332 23333322 2332 234567777766 699999877654
Q ss_pred cccccc-CCCChhhhhhhhcccccCCcEE--EEEcChhHHHHHHHHHh
Q 007165 531 FSEIEE-RGCSFEDLLIEMDRMLRPEGFV--IIRDKSSIINYIRKFIT 575 (615)
Q Consensus 531 fs~~~~-~~c~~~~i~~EmdRilRp~g~~--iird~~~~~~~~~~~~~ 575 (615)
|..-.. ...-+.+++-+-=++|+|+|.+ +++.....-..++++..
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 431111 1133678888999999999977 55666655555555544
No 350
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=76.32 E-value=25 Score=38.50 Aligned_cols=105 Identities=19% Similarity=0.234 Sum_probs=59.3
Q ss_pred CCCCeEEEECCCCc----hHHHHHhcC-------CCccccC----Chhch---hHHHHHHHHHcCCCcEEEEec---CCC
Q 007165 214 GNIRNVLDVGCGVA----SFGAYLLSH-------DIIAMSL----APNDV---HENQIQFALERGIPSTLGVLG---TKR 272 (615)
Q Consensus 214 ~~~~~VLDIGCGtG----~~a~~L~~~-------~V~gvdi----s~~Dl---s~a~i~~A~erg~~~~~~v~d---~~~ 272 (615)
.+.-.|+|+|.|.| .+...|+.+ ++|+++. ....+ .....++|+..|++.+|...- .+.
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~ 188 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLED 188 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhh
Confidence 34567999999999 344555543 5666665 22222 233446677779988887642 222
Q ss_pred C-----CCCCCCceEEEecccccccccc-------hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 273 L-----PYPSRSFELAHCSRCRIDWLQR-------DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 273 L-----pfpd~sFDlV~~s~~~l~~~~d-------~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+ ...++..=+|.|.+ .+|++.+ +...+....|-|+|.-..+ +..+.
T Consensus 189 l~~~~l~~~~~E~laVn~~~-~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~-~E~ea 246 (374)
T PF03514_consen 189 LDPSMLRLRPGEALAVNCMF-QLHHLLDESGALENPRDAFLRVIRSLNPKVVVL-VEQEA 246 (374)
T ss_pred CCHHHhCccCCcEEEEEeeh-hhhhhccccccccchHHHHHHHHHhcCCCEEEE-EeecC
Confidence 2 12223333333444 4677652 3345667778899985444 44433
No 351
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=76.23 E-value=7.2 Score=40.55 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=53.5
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-----CCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-----pfpd~sFDlV~~s~~~ 289 (615)
..+||..|+| .|..+..++.. .+..+...+.++...+.+++.|....+...+ ... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~--~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKA--MGAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC-
Confidence 4578888876 46666666654 1222333344555666776666532221111 010 123467998874321
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+.++.+.|++||.++...
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1347888999999999999765
No 352
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=75.63 E-value=1.5 Score=43.73 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=60.1
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCCC-----CchhHHhhcccc-c-ccccccccCCCCCCccceeccccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-----ARLKIIYDRGLI-G-TVHDWCESFSTYPRTYDLLHAWKVFSEI 534 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-----~tL~~iy~RGli-G-~~hdwce~fstYprtyDl~Ha~~~fs~~ 534 (615)
.++|..+|-|.=|--|..+-.= |.-+|.. ....++-.+||= = ...| .+.++ +|..||+|-+..+|-.+
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~D-l~~~~-~~~~yD~I~st~v~~fL 107 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVAD-LNDFD-FPEEYDFIVSTVVFMFL 107 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-B-GCCBS--TTTEEEEEEESSGGGS
T ss_pred cEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEec-chhcc-ccCCcCEEEEEEEeccC
Confidence 6999999999988888766532 3333321 233344456763 2 2223 33443 68899999988888755
Q ss_pred ccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 535 EERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 535 ~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
... .+..|+--|-.-++|||+.+|-
T Consensus 108 ~~~--~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 108 QRE--LRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp -GG--GHHHHHHHHHHTEEEEEEEEEE
T ss_pred CHH--HHHHHHHHHHhhcCCcEEEEEE
Confidence 433 5678889999999999999883
No 353
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=74.99 E-value=16 Score=41.46 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc---CCCccccCChhchhHHHHHHHHHc----CCC--cE
Q 007165 194 KYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS---HDIIAMSLAPNDVHENQIQFALER----GIP--ST 264 (615)
Q Consensus 194 ~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~er----g~~--~~ 264 (615)
...+.+.+++.. ....+|.|-.||+|++.....+ +...-+.+.+.+........|+.. |++ +.
T Consensus 173 ~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~ 244 (489)
T COG0286 173 EVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDAN 244 (489)
T ss_pred HHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccc
Confidence 345566666653 2234899999999976555432 111013344555555555555443 443 35
Q ss_pred EEEecCCCCCC-----CCCCceEEEecccc--ccccc----------------------chHHHHHHHHhccCCCeEEEE
Q 007165 265 LGVLGTKRLPY-----PSRSFELAHCSRCR--IDWLQ----------------------RDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 265 ~~v~d~~~Lpf-----pd~sFDlV~~s~~~--l~~~~----------------------d~~~~L~ei~RvLkPGG~Lvi 315 (615)
+..+|...-|. ..+.||.|++.--. -.|.. ....+++.+...|+|||+..+
T Consensus 245 i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 245 IRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred ccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 55565444442 33679999874210 11110 114588999999999998887
Q ss_pred EcCCC
Q 007165 316 SSPEA 320 (615)
Q Consensus 316 s~P~~ 320 (615)
..|..
T Consensus 325 vl~~g 329 (489)
T COG0286 325 VLPDG 329 (489)
T ss_pred EecCC
Confidence 77653
No 354
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=74.86 E-value=35 Score=35.49 Aligned_cols=128 Identities=21% Similarity=0.265 Sum_probs=67.9
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHH----HcCCCcEEEEecCCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL----ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~----erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l 290 (615)
.+.+|+|||||.=-++....... ....+.+.|++..++++.. ..+++..+.+.|...-+ +....|+++..- ++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK-~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLK-TL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHH-HH
Confidence 46889999999998888776431 2234444555666555543 34777888888865544 447799999665 46
Q ss_pred ccccchHH-HHHHHHhccCCCeEEEEEcCCCC--CCChhHHH-HHHHHHHHHhhcceEEE
Q 007165 291 DWLQRDGI-LLLELDRLLRPGGYFVYSSPEAY--AHDPENRR-IWNAMYDLLKSMCWKIV 346 (615)
Q Consensus 291 ~~~~d~~~-~L~ei~RvLkPGG~Lvis~P~~~--~~~~e~~~-~w~~l~~La~~l~W~l~ 346 (615)
+-+..... ...++.+.++ .=++++|.|--- ++..-..+ .-..++.++..-.|.+.
T Consensus 182 p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence 65544322 2233333343 235566665421 12222222 22456677777777643
No 355
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=74.40 E-value=8.8 Score=40.75 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=52.4
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEe--cCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVL--GTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~--d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
..+||=+||| .|.++..++.. .+. .+...+.++...+++++.|....+... +...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4678888875 23444444433 122 222334556667888887754322111 11111111235898874321
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
....+....++|++||.+++...
T Consensus 245 ----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467888899999999998763
No 356
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=74.18 E-value=5.2 Score=40.34 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=48.8
Q ss_pred CCeEEEECCCCchHHHHHh--------cCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC----C----CCCC
Q 007165 216 IRNVLDVGCGVASFGAYLL--------SHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP----Y----PSRS 279 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~--------~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp----f----pd~s 279 (615)
++.|+++|.-.|..+..++ +.+|.++|+.........++. ......+.+.++|..+.. . ....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 4789999998886555443 247888888443332211111 011246788888854332 1 1123
Q ss_pred ceEEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 280 FELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 280 FDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.+|+ -- +-|...+.-..|+-...+++||+|+++.+
T Consensus 112 ~vlVi-lD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 112 PVLVI-LD-SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SEEEE-ES-S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ceEEE-EC-CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 34554 33 34445566677888999999999999854
No 357
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=72.86 E-value=8.6 Score=40.87 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCCCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHc---------CCCcEEEEecCCCC--CCCCCCce
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALER---------GIPSTLGVLGTKRL--PYPSRSFE 281 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~er---------g~~~~~~v~d~~~L--pfpd~sFD 281 (615)
..+++||-||-|.|.+.+....+ .|-.+.+-. +..+.++..++. +..+.+..+|.-.+ ..+.++||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~e--iD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCE--IDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeeh--hhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 35688999999999988776654 233333333 233333333221 44567777773221 13468999
Q ss_pred EEEecccccccccc----hHHHHHHHHhccCCCeEEEEEcCCC
Q 007165 282 LAHCSRCRIDWLQR----DGILLLELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 282 lV~~s~~~l~~~~d----~~~~L~ei~RvLkPGG~Lvis~P~~ 320 (615)
+|+.-.. =.-.+. ...++..+.+.||+||+++...-..
T Consensus 198 Vii~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~ 239 (337)
T KOG1562|consen 198 VIITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM 239 (337)
T ss_pred EEEEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence 9985321 111111 1347888999999999999977444
No 358
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=71.98 E-value=4.8 Score=41.85 Aligned_cols=103 Identities=11% Similarity=0.124 Sum_probs=54.8
Q ss_pred CCceeeeeeccccchhHHhhhcCCC-cEEEEeccCCC-CCchhHHhhc-----c-----ccccc-ccccccCCCCCCccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM-SARLKIIYDR-----G-----LIGTV-HDWCESFSTYPRTYD 523 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~~-vwvmnvvp~~~-~~tL~~iy~R-----G-----liG~~-hdwce~fstYprtyD 523 (615)
..+-++|+++.+|-|+++..+.+.+ +- +|+=++- ++.+...-+. | -+-+. .|--+-....+++||
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~--~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVE--KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcc--eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 3445699999999999998876554 32 2222221 1222221110 0 01111 122221223478999
Q ss_pred eecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 524 LLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 524 l~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+|=.+.-...-....--..+.+-.+-|+|+|||.+++.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99765432210000011345666788999999999986
No 359
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=71.97 E-value=66 Score=32.95 Aligned_cols=117 Identities=11% Similarity=0.135 Sum_probs=70.1
Q ss_pred eEEEECCCCchHHHHHhcC----CCccccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCC-CCCCceEEEeccccc
Q 007165 218 NVLDVGCGVASFGAYLLSH----DIIAMSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPY-PSRSFELAHCSRCRI 290 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~----~V~gvdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpf-pd~sFDlV~~s~~~l 290 (615)
++.||||--|.+..+|... .+++.|+++.-+..+..++. +.++. +....+|.. .++ ++..+|+|+...+.-
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~-~~~l~~~i~vr~~dgl-~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVK-KNNLSERIDVRLGDGL-AVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHH-hcCCcceEEEeccCCc-cccCccCCcCEEEEeCCcH
Confidence 4999999999999999865 45667777766655543333 33433 344455541 123 345799888765321
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEee
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSKK 349 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~~ 349 (615)
.-...+|.+-..-|+.=-+|++. |+. .. ..++..+....|.+.++.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlILQ-Pn~---~~------~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLILQ-PNI---HT------YELREWLSANSYEIKAET 142 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEEC-CCC---CH------HHHHHHHHhCCceeeeee
Confidence 12345677777777643456553 332 11 245666778888877544
No 360
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=71.83 E-value=8.4 Score=43.86 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCeEEEECCCCchHHHHHhc------C--CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 216 IRNVLDVGCGVASFGAYLLS------H--DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~------~--~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
...|+-+|+|-|-+....++ + .+.+++=.|..+..-+...-..-.-.+.++..|...++-|..+.|+++ +.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SE 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SE 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HH
Confidence 56788999999966554432 2 233333333222111100011113457888899999986668899998 44
Q ss_pred cccccccch---HHHHHHHHhccCCCeEEEEE
Q 007165 288 CRIDWLQRD---GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 288 ~~l~~~~d~---~~~L~ei~RvLkPGG~Lvis 316 (615)
.+.-+.|- .+.|..+.+.|||.|..+=.
T Consensus 447 -LLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 447 -LLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred -hhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 24444333 46899999999999877743
No 361
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=71.51 E-value=5.1 Score=38.84 Aligned_cols=99 Identities=25% Similarity=0.428 Sum_probs=56.2
Q ss_pred cCCceeeeeeccccch--hHHhhhcCCCcEEEEeccCCCCCchhHH---hhc------c-cccccccccccC--CC-CCC
Q 007165 456 QKNTFRNVMDMNSNLG--GFAAALKDKDVWVMNVAPVRMSARLKII---YDR------G-LIGTVHDWCESF--ST-YPR 520 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~g--gfaaal~~~~vwvmnvvp~~~~~tL~~i---y~R------G-liG~~hdwce~f--st-Ypr 520 (615)
...+=++|++..||.| |.+||... ....||=+|.+..|+.+ .++ + .--...||-++. .. -++
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-S
T ss_pred hhcCCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccc
Confidence 3445579999999877 88888872 22233445554444432 111 1 233557998854 11 257
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
.||+|-|+.++=. .. ..+.++-=|+++|.|+|.+++-
T Consensus 119 ~~D~IlasDv~Y~-~~---~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 119 SFDVILASDVLYD-EE---LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp SBSEEEEES--S--GG---GHHHHHHHHHHHBTT-TTEEEE
T ss_pred cCCEEEEecccch-HH---HHHHHHHHHHHHhCCCCEEEEE
Confidence 8999999888652 12 3667777789999999998885
No 362
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=71.33 E-value=3.5 Score=40.33 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=50.9
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhcccccccccccccCCCC-CCccceecccccccccccCCC
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGLIGTVHDWCESFSTY-PRTYDLLHAWKVFSEIEERGC 539 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGliG~~hdwce~fstY-prtyDl~Ha~~~fs~~~~~~c 539 (615)
+|+|..+|.|.++.+|.+..-. +++=++. +.-+.....+|+-=+..|-.+....+ +.+||+|-+++.|..+.
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 6999999999999999644211 2222232 23343444455421222322222223 47999999998887543
Q ss_pred ChhhhhhhhcccccC
Q 007165 540 SFEDLLIEMDRMLRP 554 (615)
Q Consensus 540 ~~~~i~~EmdRilRp 554 (615)
+...+|-||-|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 366777777665543
No 363
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=70.81 E-value=7.1 Score=43.07 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=69.5
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC-----CchhHHhhccccc---ccccc---cccCCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIG---TVHDW---CESFSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-----~tL~~iy~RGliG---~~hdw---ce~fstYprtyDl~Ha~ 528 (615)
..++|+.+|-|.|+.+|... |-+ ||+=++-. ..+.-+-.+||=. +-.|- .+.|+ +-++|.|+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~--~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~--~~s~D~I~ln 199 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK--LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP--SNSVEKIFVH 199 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC--CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC--CCceeEEEEe
Confidence 36999999999999999743 332 44444422 2233344555411 12232 24454 4789999865
Q ss_pred ccccc-c-c--cCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhc
Q 007165 529 KVFSE-I-E--ERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL 577 (615)
Q Consensus 529 ~~fs~-~-~--~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~ 577 (615)
|.. + + .+|=-..+.|-|+=|+|+|||.+.++ |..+..+.+.+.+...
T Consensus 200 --FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 200 --FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred --CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 442 1 1 12223478999999999999999986 7777777766666544
No 364
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=69.99 E-value=2.7 Score=43.75 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=63.5
Q ss_pred eeeccccchhHHhhhcCCCcEEEEeccCCCCCchhHHhhcccccccccccccCCCCCCccceecccccccccccCCCChh
Q 007165 463 VMDMNSNLGGFAAALKDKDVWVMNVAPVRMSARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFE 542 (615)
Q Consensus 463 vmdm~a~~ggfaaal~~~~vwvmnvvp~~~~~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~ 542 (615)
|-||.+|=+-.|. =...+|--|-.|+++..=|--=|-+ -|.. -+|-|. |-.++|.+.. ++.
T Consensus 184 IaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~cDm~~-----------vPl~--d~svDv--aV~CLSLMgt---n~~ 244 (325)
T KOG3045|consen 184 IADFGCGEAKIAS-SERHKVHSFDLVAVNERVIACDMRN-----------VPLE--DESVDV--AVFCLSLMGT---NLA 244 (325)
T ss_pred EEecccchhhhhh-ccccceeeeeeecCCCceeeccccC-----------CcCc--cCcccE--EEeeHhhhcc---cHH
Confidence 7899988776654 2345788888888765311110100 0111 256665 4556775444 599
Q ss_pred hhhhhhcccccCCcEEEEEcChhHHHHHHH---HHhhcCccc
Q 007165 543 DLLIEMDRMLRPEGFVIIRDKSSIINYIRK---FITALKWDG 581 (615)
Q Consensus 543 ~i~~EmdRilRp~g~~iird~~~~~~~~~~---~~~~~~w~~ 581 (615)
|-+.|.-|||+|||.+.|-+-..=...|+. -++.|..+.
T Consensus 245 df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 245 DFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred HHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCee
Confidence 999999999999999999865544444443 345777876
No 365
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.82 E-value=1.2 Score=43.06 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=37.6
Q ss_pred cccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 512 CESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 512 ce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
=-.|. |++-|+|-|.|+..+++-+ +...-+=|-.|+|||||++-|.
T Consensus 40 e~~F~--dns~d~iyaeHvlEHlt~~--Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 40 ESMFE--DNSVDAIYAEHVLEHLTYD--EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hccCC--CcchHHHHHHHHHHHHhHH--HHHHHHHHHHHHhCcCcEEEEE
Confidence 34555 4999999999998887653 5677788999999999998876
No 366
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=67.92 E-value=7.4 Score=38.73 Aligned_cols=97 Identities=11% Similarity=0.180 Sum_probs=63.0
Q ss_pred eeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhccc-------ccccccccccCCCCCCccceecccccc
Q 007165 460 FRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDRGL-------IGTVHDWCESFSTYPRTYDLLHAWKVF 531 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~RGl-------iG~~hdwce~fstYprtyDl~Ha~~~f 531 (615)
-..|+|..+|-|.|+..|.+... .|+=+|. ++.+....+|.- +...+ ..+..-|.+||++=+..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEV---NDLLSLCGEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CChhhCCCCcCEEEEhhHH
Confidence 46899999999999999987542 4455553 456666555421 11221 1222234789999877666
Q ss_pred cccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 532 SEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 532 s~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
..... -.+..++-+|.|+++|++.+.+-...
T Consensus 130 ~~~~~--~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 130 IHYPA--SDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred HhCCH--HHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 53221 24678899999999988888775443
No 367
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=67.56 E-value=10 Score=42.06 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=61.3
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cccccc--ccccccCC--C--CCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GLIGTV--HDWCESFS--T--YPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----GliG~~--hdwce~fs--t--YprtyDl~Ha~ 528 (615)
..|+||.||-||+++.+... + --.|+-++- ++.|..+-++ |+=... ++ ..+++ . -+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEEc
Confidence 57999999999999877642 2 112333442 3444443222 431001 21 11211 1 24679999754
Q ss_pred ------cccccccc--CCCC----------hhhhhhhhcccccCCcEEEEE-------cChhHHHHHHH
Q 007165 529 ------KVFSEIEE--RGCS----------FEDLLIEMDRMLRPEGFVIIR-------DKSSIINYIRK 572 (615)
Q Consensus 529 ------~~fs~~~~--~~c~----------~~~i~~EmdRilRp~g~~iir-------d~~~~~~~~~~ 572 (615)
|++...-. .+=+ -..||-++=|.|||||.+++. ++.+++.++-+
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 55431100 0000 256888999999999999998 66666655543
No 368
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=67.27 E-value=7.4 Score=38.03 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=33.1
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcc-eEEEEeeCceEEEecc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMC-WKIVSKKDQTVIWAKP 358 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~-W~l~~~~~~~aiwqKP 358 (615)
|.......+.++.|+|||||.+++......... .....+.+... |.+. +..+|.|+
T Consensus 31 y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~----~~iiW~K~ 87 (231)
T PF01555_consen 31 YLEWMEEWLKECYRVLKPGGSIFIFIDDREIAG-------FLFELALEIFGGFFLR----NEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECT-------HHHHHHHHHHTT-EEE----EEEEEE-S
T ss_pred HHHHHHHHHHHHHhhcCCCeeEEEEecchhhhH-------HHHHHHHHHhhhhhee----ccceeEec
Confidence 344456789999999999999999775543221 01122233333 5444 46789887
No 369
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=67.06 E-value=27 Score=36.42 Aligned_cols=100 Identities=17% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCeEEEECCCCchHHHHHhcC--------CCccccCChhchhHHHHHHHHHc-CCCcEEEEecC----CCCCCCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH--------DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGT----KRLPYPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~--------~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~----~~Lpfpd~sFDl 282 (615)
..+.+|+|.|+..=++.|.++ +.+.+|++..-++....+++++. ++++.-.++|. ..+| .+.=-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 467999999999877777643 33445555444444333333333 44444444442 1223 222222
Q ss_pred EEecccccc-cccch-HHHHHHHHhccCCCeEEEEEc
Q 007165 283 AHCSRCRID-WLQRD-GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 283 V~~s~~~l~-~~~d~-~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.+...+.+. +.+++ ..+|..+...|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 222222333 34444 458999999999999999855
No 370
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=65.51 E-value=8.1 Score=41.32 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=59.5
Q ss_pred eeeeccccchhHHh--hhcCCCcEEEEeccCCCC-CchhH----Hhhccccc--ccccccccCCCCCCccceeccccccc
Q 007165 462 NVMDMNSNLGGFAA--ALKDKDVWVMNVAPVRMS-ARLKI----IYDRGLIG--TVHDWCESFSTYPRTYDLLHAWKVFS 532 (615)
Q Consensus 462 nvmdm~a~~ggfaa--al~~~~vwvmnvvp~~~~-~tL~~----iy~RGliG--~~hdwce~fstYprtyDl~Ha~~~fs 532 (615)
.|+|..+|-|+|+. |+... +|+=+|-. ..+.. +-.-|+-+ +++.=...++.-..+||+|=.+-=|.
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 69999999999954 44332 33333432 22221 11224432 22211112222235899988763332
Q ss_pred c---cccC--CCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCc
Q 007165 533 E---IEER--GCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKW 579 (615)
Q Consensus 533 ~---~~~~--~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w 579 (615)
. .... ..-..+++-|+-|+|+|||++++--..+ ..+++.+..-.|
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 1 1111 1225789999999999999887653222 144456666666
No 371
>PRK00811 spermidine synthase; Provisional
Probab=65.31 E-value=8.3 Score=40.47 Aligned_cols=104 Identities=12% Similarity=0.188 Sum_probs=55.5
Q ss_pred cCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCCCCCchhHHhhc------cc-----cccc-ccccccCCCCCCcc
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMSARLKIIYDR------GL-----IGTV-HDWCESFSTYPRTY 522 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~~tL~~iy~R------Gl-----iG~~-hdwce~fstYprty 522 (615)
....-++|+++.+|-|+++..+.+. ++--+-+|=.+ +..+.+.-+. |+ +-+. .|--+-..+-+.+|
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid-~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEID-ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCC-HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 3345789999999999999988765 44322222222 2223222110 11 1111 11111112335789
Q ss_pred ceeccccccccccc-CCCChhhhhhhhcccccCCcEEEEE
Q 007165 523 DLLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 523 Dl~Ha~~~fs~~~~-~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
|+|=.+. +..... ..---.+.+-++-|+|+|||.+++.
T Consensus 152 DvIi~D~-~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 152 DVIIVDS-TDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred cEEEECC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9986542 110000 0000145667889999999999996
No 372
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=65.03 E-value=3.5 Score=43.34 Aligned_cols=40 Identities=25% Similarity=0.363 Sum_probs=26.3
Q ss_pred CceEEEecccccccccchHHH-HHHHHhccCCCeEEEEEcCC
Q 007165 279 SFELAHCSRCRIDWLQRDGIL-LLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 279 sFDlV~~s~~~l~~~~d~~~~-L~ei~RvLkPGG~Lvis~P~ 319 (615)
.||+|.++.. +--......+ ......++++.|.++++...
T Consensus 196 ~ydlIlsSet-iy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~ 236 (282)
T KOG2920|consen 196 HYDLILSSET-IYSIDSLAVLYLLHRPCLLKTDGVFYVAAKK 236 (282)
T ss_pred chhhhhhhhh-hhCcchhhhhHhhhhhhcCCccchhhhhhHh
Confidence 6888888774 3323333333 66777788899988876543
No 373
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=64.58 E-value=21 Score=38.46 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=60.2
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC---------CCCCCceEEE
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP---------YPSRSFELAH 284 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp---------fpd~sFDlV~ 284 (615)
..+.+||-+|+|.=.+..-+..+-.-+.++.-.|+.+..++.|++.|..+........... +....||+.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 3457899999996443333332222344555567788889999998876544333322111 2234588877
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.. .+ +..++-....||+||.+++..
T Consensus 248 dCs-G~------~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 248 DCS-GA------EVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred Ecc-Cc------hHHHHHHHHHhccCCEEEEec
Confidence 432 22 346777788999999988876
No 374
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=64.50 E-value=10 Score=37.61 Aligned_cols=102 Identities=13% Similarity=0.202 Sum_probs=60.1
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhhc----ccccccccccccCCCCCCccceecccccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
.-.+|+|..+|-|.|+.+|.+... .|+=++. ++-+...-.+ |+-...+--...+..-+.+||++-+.++|..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 346899999999999999875532 2333443 2444433322 2211111111124444578999999888753
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcChh
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 565 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~~~ 565 (615)
... -.+..++-++-|++++++.+.+.....
T Consensus 140 ~~~--~~~~~~l~~l~~~~~~~~~i~~~~~~~ 169 (230)
T PRK07580 140 YPQ--EDAARMLAHLASLTRGSLIFTFAPYTP 169 (230)
T ss_pred CCH--HHHHHHHHHHHhhcCCeEEEEECCccH
Confidence 322 246778888888887666666554433
No 375
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=64.22 E-value=24 Score=36.81 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=51.0
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQ 294 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~ 294 (615)
..+||-+|+| .|..+..++.. .+..+.....+....+.+++.+....+.........-..+.+|+++... .
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~--~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~--~---- 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARA--MGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTV--V---- 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECC--C----
Confidence 4678888886 55555555544 2333333344555556665555332221111000000124689887432 1
Q ss_pred chHHHHHHHHhccCCCeEEEEEc
Q 007165 295 RDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 295 d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+.++.+.|+++|.++...
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEEC
Confidence 1236788899999999999765
No 376
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=63.80 E-value=10 Score=40.28 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=74.2
Q ss_pred hhHhhHHHHHHHHHHhhhccccCCceeeeeeccccch--hHHhhhcCC-CcEEEEeccCCCCCchhHHhhccccccc--c
Q 007165 435 EDIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG--GFAAALKDK-DVWVMNVAPVRMSARLKIIYDRGLIGTV--H 509 (615)
Q Consensus 435 ~d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~g--gfaaal~~~-~vwvmnvvp~~~~~tL~~iy~RGliG~~--h 509 (615)
+.|+.=-+.+..| + ..+ ..|+|+.+|-| +.|||+..- .|.-.-.=|..-.++.--+-.-|+-.-. +
T Consensus 146 ~TT~lcl~~l~~~---~----~~g--~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~ 216 (295)
T PF06325_consen 146 PTTRLCLELLEKY---V----KPG--KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS 216 (295)
T ss_dssp HHHHHHHHHHHHH---S----STT--SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES
T ss_pred HHHHHHHHHHHHh---c----cCC--CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE
Confidence 3455555555544 2 222 38999999988 556666543 3544333222211222222222321111 1
Q ss_pred cccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhH-HHHHHHHHhhcCccceeecccc
Q 007165 510 DWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI-INYIRKFITALKWDGWLSEVEP 588 (615)
Q Consensus 510 dwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~-~~~~~~~~~~~~w~~~~~~~~~ 588 (615)
-.+.+.. ..||||=|+=+..- +..++=.+.+.|+|||++|+.=-..- .+.|++.++. .|+.....
T Consensus 217 -~~~~~~~--~~~dlvvANI~~~v-------L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~--- 282 (295)
T PF06325_consen 217 -LSEDLVE--GKFDLVVANILADV-------LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEER--- 282 (295)
T ss_dssp -CTSCTCC--S-EEEEEEES-HHH-------HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEE---
T ss_pred -Eeccccc--ccCCEEEECCCHHH-------HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEE---
Confidence 2333333 89999998876663 55677789999999999998721111 2344444454 66652111
Q ss_pred ccCcCCCCCceEEEEEec
Q 007165 589 RIDALSSSEERVLIAKKK 606 (615)
Q Consensus 589 ~~~~~~~~~e~~l~~~k~ 606 (615)
+ .+.---|+++|+
T Consensus 283 ~-----~~~W~~l~~~Kk 295 (295)
T PF06325_consen 283 E-----EGEWVALVFKKK 295 (295)
T ss_dssp E-----ETTEEEEEEEE-
T ss_pred E-----ECCEEEEEEEeC
Confidence 1 124556777775
No 377
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=63.38 E-value=9.1 Score=39.04 Aligned_cols=96 Identities=10% Similarity=0.198 Sum_probs=51.1
Q ss_pred ccCCceeeeeeccccchh--H--HhhhcC-CCcEEEEeccCCCCCchhHH----hhccc---cccc-ccccccCCCC---
Q 007165 455 AQKNTFRNVMDMNSNLGG--F--AAALKD-KDVWVMNVAPVRMSARLKII----YDRGL---IGTV-HDWCESFSTY--- 518 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~gg--f--aaal~~-~~vwvmnvvp~~~~~tL~~i----y~RGl---iG~~-hdwce~fstY--- 518 (615)
+....-++|+|+.++.|. + |+++.. -.|.-+=.-| ..+.+. -.-|+ |-+. .|.-|.++..
T Consensus 64 ~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~----~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 64 VKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK----EAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH----HHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence 344456799999987775 3 334332 2233322212 222221 22233 1121 2333333322
Q ss_pred --CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 519 --PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 519 --prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+||++-.+.--. +..+++-++=|.|||||.+|+.
T Consensus 140 ~~~~~fD~VfiDa~k~-------~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 140 DPKPEFDFAFVDADKP-------NYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCCCCEEEECCCHH-------HHHHHHHHHHHhcCCCeEEEEE
Confidence 35899997765322 3456666777999999999974
No 378
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.16 E-value=26 Score=37.06 Aligned_cols=89 Identities=18% Similarity=0.096 Sum_probs=51.2
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
++.+||=.|+| .|.++..+++. .+..+...+.++...+++++.|....+. .... ..+.+|+++-... .
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~~--~~~~~d~~i~~~~-~--- 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALA--QGATVHVMTRGAAARRLALALGAASAGG---AYDT--PPEPLDAAILFAP-A--- 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHHhCCceecc---cccc--CcccceEEEECCC-c---
Confidence 35689999975 33444445443 1222222344555668888877643222 1111 1245887653221 1
Q ss_pred cchHHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
...+....+.|++||.+++..
T Consensus 234 ---~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 ---GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred ---HHHHHHHHHhhCCCcEEEEEe
Confidence 247888999999999998865
No 379
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=63.04 E-value=9.6 Score=44.75 Aligned_cols=53 Identities=19% Similarity=0.058 Sum_probs=32.0
Q ss_pred EEEEecCCC-CCCCCCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEE
Q 007165 264 TLGVLGTKR-LPYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 264 ~~~v~d~~~-Lpfpd~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis 316 (615)
.+..+|+.. ++--+..||+++.-..+-...++. ..+|.++.|+++|||.|+-.
T Consensus 150 ~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 150 DLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred EEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 345556432 221225699998543111112222 56999999999999999943
No 380
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=62.76 E-value=16 Score=40.26 Aligned_cols=70 Identities=20% Similarity=0.286 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHcCCCcEEEEecCCCC--CCCCCCceEEEecccccccccch--HHHHHHHHhccCCCeEEEEEc
Q 007165 247 DVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 247 Dls~a~i~~A~erg~~~~~~v~d~~~L--pfpd~sFDlV~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-+.+..-+..+++-..+.++..+..+. ..++++||.++.+. ...|+++. ...++++.+.++|||++++-+
T Consensus 261 YL~~e~f~~lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D-~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 261 YLRPENFEALRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSD-HMDWMDPEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred hhcHhHHHHHhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecc-hhhhCCHHHHHHHHHHHHHHhCCCCEEEEee
Confidence 333333333333334466666654332 14679999999888 69998765 568999999999999999854
No 381
>PRK01581 speE spermidine synthase; Validated
Probab=62.58 E-value=20 Score=39.36 Aligned_cols=149 Identities=13% Similarity=0.051 Sum_probs=76.6
Q ss_pred cCCceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHh--------hcc------cccccccccccCCCCCC
Q 007165 456 QKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIY--------DRG------LIGTVHDWCESFSTYPR 520 (615)
Q Consensus 456 ~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy--------~RG------liG~~hdwce~fstYpr 520 (615)
.-..-++|+++..|-|+.+..+.+.+- |.+|+=++- +.-+.+.- .+| +-=+.-|--+-...-++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345568999999999998888876542 223333321 22222211 111 11112222222223357
Q ss_pred ccceecccccccccc--cCCCChhhhhhhhcccccCCcEEEEEcC-----hhHHHHHHHHHhhcCccceeeccccccCcC
Q 007165 521 TYDLLHAWKVFSEIE--ERGCSFEDLLIEMDRMLRPEGFVIIRDK-----SSIINYIRKFITALKWDGWLSEVEPRIDAL 593 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~--~~~c~~~~i~~EmdRilRp~g~~iird~-----~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 593 (615)
+||+|=.+--.. .. ..+---.+.+-.+-|+|+|||.+++... .+++..+.+.++..--.+.... .--|-
T Consensus 226 ~YDVIIvDl~DP-~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~---t~vPs 301 (374)
T PRK01581 226 LYDVIIIDFPDP-ATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH---TIVPS 301 (374)
T ss_pred CccEEEEcCCCc-cccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE---EecCC
Confidence 899998773111 00 0011124567788999999999998754 2333444555554444432111 11121
Q ss_pred CCCCceEEEEEeccCc
Q 007165 594 SSSEERVLIAKKKLWD 609 (615)
Q Consensus 594 ~~~~e~~l~~~k~~w~ 609 (615)
..+.-.+.+|.|.-..
T Consensus 302 yg~~WgF~~as~~~~~ 317 (374)
T PRK01581 302 FGTDWGFHIAANSAYV 317 (374)
T ss_pred CCCceEEEEEeCCccc
Confidence 1223668888776543
No 382
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=62.41 E-value=7.5 Score=43.41 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=55.3
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCC-CCchhHHhh----ccccc---ccccccccCCCCCCccceeccc--
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRM-SARLKIIYD----RGLIG---TVHDWCESFSTYPRTYDLLHAW-- 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~-~~tL~~iy~----RGliG---~~hdwce~fstYprtyDl~Ha~-- 528 (615)
.+|+||.||.||++.++... +- ..|+=++- ++-+..+-+ .|+-. +-.|..+....+|.+||+|=.+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 57999999999998777542 11 13333343 344444332 23311 1234433323456889998443
Q ss_pred ----cccccc-----ccCCCC-------hhhhhhhhcccccCCcEEEEE
Q 007165 529 ----KVFSEI-----EERGCS-------FEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 529 ----~~fs~~-----~~~~c~-------~~~i~~EmdRilRp~g~~iir 561 (615)
|++..- ....-. ...||-+.=|.|+|||.+++.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 443310 000001 135788889999999999975
No 383
>KOG2730 consensus Methylase [General function prediction only]
Probab=62.17 E-value=3.3 Score=42.17 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=49.8
Q ss_pred CeEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc----CC--CcEEEEecCCC----CCCCCCCceEEE
Q 007165 217 RNVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER----GI--PSTLGVLGTKR----LPYPSRSFELAH 284 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er----g~--~~~~~v~d~~~----Lpfpd~sFDlV~ 284 (615)
..|+|.-||.|..+...+-+ .|+++|+++.-+ ..|+.. |+ .+.|.++|..+ +.+....+|+|+
T Consensus 96 ~~iidaf~g~gGntiqfa~~~~~VisIdiDPikI-----a~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKI-----ACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred chhhhhhhcCCchHHHHHHhCCeEEEEeccHHHH-----HHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 46999999999877776644 677887766543 333332 55 36788888533 344444456666
Q ss_pred ecccccccccchHHHHHHHHhccCCCe
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGG 311 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG 311 (615)
.+- --....-...-+..+...+.|.|
T Consensus 171 ~sp-pwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 171 LSP-PWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred cCC-CCCCcchhhhhhhhhhhhcchhH
Confidence 543 11111222334444555555543
No 384
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=62.10 E-value=11 Score=37.49 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=58.8
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhccc-ccccc-cccccCCCCCCccceeccccccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDRGL-IGTVH-DWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~RGl-iG~~h-dwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
..|+|..+|.|-++.+|... +- .+|+-++- ++-+-..-++-- +-+.+ |-.++|. +.+||+|-+.+++..+..
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHINP 120 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCCH
Confidence 45999999999999998754 31 13444442 344443322110 11222 3233443 579999999999986642
Q ss_pred CCCChhhhhhhhcccccCCcEEEEE
Q 007165 537 RGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 537 ~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
=.+..++-||.|++ +++++|-
T Consensus 121 --~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 121 --DNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred --HHHHHHHHHHHhhc--CcEEEEE
Confidence 24778889999998 4677774
No 385
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=61.52 E-value=8.1 Score=35.12 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=17.7
Q ss_pred CCeEEEECCCCchHHHHHhcCC
Q 007165 216 IRNVLDVGCGVASFGAYLLSHD 237 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~ 237 (615)
....+|||||.|.+..-|....
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EG 80 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEG 80 (112)
T ss_pred CCceEEccCCchHHHHHHHhCC
Confidence 4569999999998888777553
No 386
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=61.17 E-value=3.5 Score=41.71 Aligned_cols=97 Identities=21% Similarity=0.324 Sum_probs=55.1
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCCC------CchhHHhhcccccccccccccCCCCCCccceecccccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS------ARLKIIYDRGLIGTVHDWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~------~tL~~iy~RGliG~~hdwce~fstYprtyDl~Ha~~~fs~ 533 (615)
--|-||.+|=+-.|+++.+. .|.-...|+.+.. -.+|. | .-+.|. |--.+|.
T Consensus 74 ~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vPL--------------~-----~~svDv--~VfcLSL 132 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVPL--------------E-----DESVDV--AVFCLSL 132 (219)
T ss_dssp S-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S---------------------TT-EEE--EEEES--
T ss_pred EEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCcC--------------C-----CCceeE--EEEEhhh
Confidence 46999999999999998643 5666666665421 11221 0 134554 3445664
Q ss_pred cccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHH---HHHhhcCccc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIR---KFITALKWDG 581 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~---~~~~~~~w~~ 581 (615)
+.. +..+.+.|--|||||+|.++|-+-..=++.++ +.++++..+.
T Consensus 133 MGT---n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 133 MGT---NWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKL 180 (219)
T ss_dssp -SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEE
T ss_pred hCC---CcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeE
Confidence 444 59999999999999999999986554443443 5566777776
No 387
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=60.44 E-value=13 Score=38.61 Aligned_cols=97 Identities=16% Similarity=0.260 Sum_probs=52.5
Q ss_pred eeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhc----cc--ccccccccccCCCCCCccceeccc---
Q 007165 462 NVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GL--IGTVHDWCESFSTYPRTYDLLHAW--- 528 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~R----Gl--iG~~hdwce~fstYprtyDl~Ha~--- 528 (615)
.|+||.||-||++..|.. ..- .|+-++. +.-|..+-++ |+ |=+++.=.+.++.....||.|=.|
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 599999999999866542 221 2444443 2444433222 33 222222222333333458888643
Q ss_pred ---ccccccccC--CC----------ChhhhhhhhcccccCCcEEEEE
Q 007165 529 ---KVFSEIEER--GC----------SFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 529 ---~~fs~~~~~--~c----------~~~~i~~EmdRilRp~g~~iir 561 (615)
|++..-... +- .-.+||-++=++|||||.++..
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 333210000 00 1245888889999999999988
No 388
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=60.34 E-value=5.2 Score=41.33 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=40.2
Q ss_pred ccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 511 WCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 511 wce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
|=+++.+ -+.|.+-+-.+||.+... .|...+=..-|+|+|||.+++||=-
T Consensus 136 ~~~~~~~--~svD~it~IFvLSAi~pe--k~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 136 LKEPPEE--GSVDIITLIFVLSAIHPE--KMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred ccCCCCc--CccceEEEEEEEeccChH--HHHHHHHHHHHHhCCCcEEEEeecc
Confidence 4455443 789999999999977543 5888888999999999999999754
No 389
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=59.66 E-value=15 Score=42.00 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCeEEEECCCCch-HHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-----------C--C------
Q 007165 215 NIRNVLDVGCGVAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----------L--P------ 274 (615)
Q Consensus 215 ~~~~VLDIGCGtG~-~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-----------L--p------ 274 (615)
++.+||=+|+|.-. .+..++.. .+.++...|.+....+.+++.|.. +...+... + +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~--lGA~V~v~d~~~~rle~a~~lGa~--~v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANS--LGAIVRAFDTRPEVKEQVQSMGAE--FLELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHcCCe--EEeccccccccccccceeecCHHHHHHHH
Confidence 45789999999763 33333332 122233334555556666665542 22222110 0 0
Q ss_pred --CC--CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEE
Q 007165 275 --YP--SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 275 --fp--d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
++ -..+|+|++.- .+.-.+.|.-+.+++.+.+|||+.++-
T Consensus 239 ~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 11 24699998765 455555565678999999999999873
No 390
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=59.50 E-value=29 Score=34.40 Aligned_cols=92 Identities=22% Similarity=0.192 Sum_probs=51.2
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-------CCCCCceEEEec
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-------YPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-------fpd~sFDlV~~s 286 (615)
+..+||..|+|. |..+..++.. .+..+...+.++...+.+++.+....+ +..... ...+.+|+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKA--AGARVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 346899999885 5555555543 122222223334444555555532211 111111 123579999854
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
.. . ...+..+.+.|+++|.++....
T Consensus 209 ~~-~------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VG-G------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CC-C------HHHHHHHHHhcccCCEEEEEcc
Confidence 31 1 1467778889999999998654
No 391
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=59.48 E-value=7.4 Score=34.86 Aligned_cols=86 Identities=22% Similarity=0.285 Sum_probs=53.0
Q ss_pred CCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCC---CC-C-CCCCCceEEEecccccccccchHHH
Q 007165 225 GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTK---RL-P-YPSRSFELAHCSRCRIDWLQRDGIL 299 (615)
Q Consensus 225 GtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~---~L-p-fpd~sFDlV~~s~~~l~~~~d~~~~ 299 (615)
|.|.++..++.. .+..+...+.++...+.+++.|....+...+.. .+ . .+.+.+|+|+-.-. -...
T Consensus 1 ~vG~~a~q~ak~--~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKA--MGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-------SGDT 71 (130)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------SHHH
T ss_pred ChHHHHHHHHHH--cCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-------cHHH
Confidence 457777777654 224444446677778888888743332211110 00 1 23357999974321 2458
Q ss_pred HHHHHhccCCCeEEEEEcCC
Q 007165 300 LLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 300 L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.+...+|+|||.+++..-.
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp HHHHHHHEEEEEEEEEESST
T ss_pred HHHHHHHhccCCEEEEEEcc
Confidence 99999999999999997743
No 392
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=59.05 E-value=38 Score=35.25 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=50.1
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCC----CCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL----PYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~L----pfpd~sFDlV~~s~~ 288 (615)
+..+||-+|+| .|..+..++.. .++. +.....+....+.+++.+.. .+...+.... ....+.+|+++....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~~ 235 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKL--NGASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEATG 235 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECCC
Confidence 34678988864 24444445443 1222 11122334455666666654 1111111110 113456999985421
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
....+.++.+.|+++|.++....
T Consensus 236 -------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEec
Confidence 13478888999999999987653
No 393
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=57.09 E-value=15 Score=38.73 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=57.8
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhc------cc--ccccccccccCCCCCCcc----c-eec
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDR------GL--IGTVHDWCESFSTYPRTY----D-LLH 526 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~R------Gl--iG~~hdwce~fstYprty----D-l~H 526 (615)
.+|+|+.||-|-++..|.+.-.=.-+|+++|-. .-|...-++ ++ .++-.|=++.+ .+|..+ + ++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~-~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL-ALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh-hhhcccccCCeEEEE
Confidence 469999999999988886441002468888854 555554443 11 22233333332 233443 2 333
Q ss_pred ccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 527 AWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 527 a~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
..+.|..+.. =+...+|-++=+.|+|||.++|.
T Consensus 144 ~gs~~~~~~~--~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFTP--EEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCCH--HHHHHHHHHHHHhcCCCCEEEEe
Confidence 3333332221 13567899999999999999974
No 394
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=56.68 E-value=1e+02 Score=32.15 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=63.3
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCC--CCCceEEEeccc-----cc
Q 007165 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYP--SRSFELAHCSRC-----RI 290 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfp--d~sFDlV~~s~~-----~l 290 (615)
+++|+-||.|.++..+...... -+...|..+..++..+.. .+..+...|...+... ...+|+++.+.- ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N-~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEAN-FPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHh-CCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 5899999999998777765211 122335555554444333 2223455666555422 357999998641 00
Q ss_pred c---cccchH-HHHH---HHHhccCCCeEEEEEcCCCCCCChhHHHHHHHHHHHHhhcceEEEEe
Q 007165 291 D---WLQRDG-ILLL---ELDRLLRPGGYFVYSSPEAYAHDPENRRIWNAMYDLLKSMCWKIVSK 348 (615)
Q Consensus 291 ~---~~~d~~-~~L~---ei~RvLkPGG~Lvis~P~~~~~~~e~~~~w~~l~~La~~l~W~l~~~ 348 (615)
. -..+.. .++. ++.+.++|-=.++=-++...... ....+..+...++.+++.+...
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~--~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHD--NGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccC--chHHHHHHHHHHHhCCcEEEEE
Confidence 0 012222 2333 44445577633332333332211 1234555666666666655433
No 395
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=56.31 E-value=1.2 Score=38.65 Aligned_cols=92 Identities=21% Similarity=0.268 Sum_probs=55.5
Q ss_pred eeeccccchhHHhhhcCCC--cEEEEeccCC-CCCchhHHhhccc-----ccccccccccCCCCCCccceeccccc-ccc
Q 007165 463 VMDMNSNLGGFAAALKDKD--VWVMNVAPVR-MSARLKIIYDRGL-----IGTVHDWCESFSTYPRTYDLLHAWKV-FSE 533 (615)
Q Consensus 463 vmdm~a~~ggfaaal~~~~--vwvmnvvp~~-~~~tL~~iy~RGl-----iG~~hdwce~fstYprtyDl~Ha~~~-fs~ 533 (615)
|+|+.+|-|-...+|.+.= -=-.++.-+| .++.|-...++.- +=.++.=++.++..-.+||++=..++ |..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 6899999999888886430 0003455555 3467776666652 11122222223333359999999666 664
Q ss_pred cccCCCChhhhhhhhcccccCCc
Q 007165 534 IEERGCSFEDLLIEMDRMLRPEG 556 (615)
Q Consensus 534 ~~~~~c~~~~i~~EmdRilRp~g 556 (615)
+.+. +++.++=+|=|+|||||
T Consensus 81 ~~~~--~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPE--ELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHH--HHHHHHHHHHHTEEEEE
T ss_pred CCHH--HHHHHHHHHHHHhCCCC
Confidence 4332 58899999999999998
No 396
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=56.02 E-value=34 Score=28.97 Aligned_cols=95 Identities=23% Similarity=0.308 Sum_probs=55.4
Q ss_pred eeeccccchh--HHhhhcCCCcEEEEeccCCCC-CchhHHhh----ccc---cccccccccc-CCCCC-Cccceeccccc
Q 007165 463 VMDMNSNLGG--FAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGL---IGTVHDWCES-FSTYP-RTYDLLHAWKV 530 (615)
Q Consensus 463 vmdm~a~~gg--faaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGl---iG~~hdwce~-fstYp-rtyDl~Ha~~~ 530 (615)
++|..++.|- +.+.+......+.. ++.. ..+...-. .++ -....|.... ++.-. .++|++ ....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 56666655434444 2221 12222111 111 2333344431 22222 489998 5544
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcChh
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSS 565 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~ 565 (615)
..... ....++-|+-|+|+|+|.+++.+...
T Consensus 128 ~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLL----PPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcC----CHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 33111 17889999999999999999986653
No 397
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=55.97 E-value=35 Score=35.73 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=50.6
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEec--CCCCCCCCCCceEEEeccccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLG--TKRLPYPSRSFELAHCSRCRI 290 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d--~~~Lpfpd~sFDlV~~s~~~l 290 (615)
+..+||-.|||. |..+..++... +. .+...+.++.+.+.+++.+....+...+ ...+....+.||+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCC--
Confidence 346788888764 45555555431 22 2222234455555556555432111100 1112212245899885431
Q ss_pred ccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 291 DWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 291 ~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+.++.+.|+++|.++...
T Consensus 241 -----~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 241 -----APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred -----CHHHHHHHHHHHhcCCEEEEEe
Confidence 1346788899999999999754
No 398
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=55.86 E-value=59 Score=33.89 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCchHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCC----CCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY----PSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpf----pd~sFDlV~~ 285 (615)
+..+||=+|+++|..-.+..+- -|.+++++... -...+..|++|. ++.-++-|+ +.|. .-.-.|+|++
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rs-GRdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRS-GRDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccc-hHHHHHHhhccC-CceeeeccC-CCchheeeeeeeEEEEec
Confidence 3467999999999877776642 46677776543 234456676663 333333343 2331 1234677763
Q ss_pred cccccccccch-HHHHHHHHhccCCCeEEEEEcCC
Q 007165 286 SRCRIDWLQRD-GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 286 s~~~l~~~~d~-~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
- +. .+|. ..+..++.-.||+||.|+++...
T Consensus 233 D---va-qpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 D---VA-QPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred c---CC-CchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 3 22 2333 44677889999999999998743
No 399
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=53.40 E-value=33 Score=36.53 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCeEEEECCCC-chHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC--CCCCCCceEEEecccc
Q 007165 216 IRNVLDVGCGV-ASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL--PYPSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L--pfpd~sFDlV~~s~~~ 289 (615)
+.+||=+|+|. |.++..+++. +|++++- .+.++...+++++.|... .....+.. ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~--~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNR--RDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEec--CCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC-
Confidence 46789888763 4555555543 3333322 122455667777776542 11111110 001246898874321
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+.+..++|++||.+++..
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEe
Confidence 1237888999999999998765
No 400
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.21 E-value=31 Score=30.25 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=46.9
Q ss_pred CeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccch
Q 007165 217 RNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRD 296 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~ 296 (615)
.+|| +-||+|..+..+++ .+.+.+.++|+++.+...+..+++-....+|+|+.+- ..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~---------------k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~p-------qi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVN---------------KMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAP-------QV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHH---------------HHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECc-------hH
Confidence 4566 66999965554443 3346778899998888777655542335689998553 23
Q ss_pred HHHHHHHHhccCCCeEEE
Q 007165 297 GILLLELDRLLRPGGYFV 314 (615)
Q Consensus 297 ~~~L~ei~RvLkPGG~Lv 314 (615)
...+.++...+.+-|.=+
T Consensus 61 ~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 61 AYMLPDLKKETDKKGIPV 78 (95)
T ss_pred HHHHHHHHHHhhhcCCCE
Confidence 345666666665544333
No 401
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=52.69 E-value=53 Score=34.29 Aligned_cols=93 Identities=9% Similarity=0.050 Sum_probs=53.2
Q ss_pred CCCeEEEECC--CCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-----CCCCCCceEEEecc
Q 007165 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-----pfpd~sFDlV~~s~ 287 (615)
++.+||=.|. |.|..+..+++. .+..+.....+....+++++.|....+...+...+ ....+.+|+|+-..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~--~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKL--KGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 3467988884 466777777654 12233223344556677777775432221111111 01124689887432
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ...+.+..++|++||.++...
T Consensus 216 ------G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 ------G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred ------C--HHHHHHHHHHhCcCcEEEEec
Confidence 1 235688899999999999754
No 402
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.31 E-value=27 Score=33.68 Aligned_cols=109 Identities=9% Similarity=-0.002 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHc-CCCcEEEEecCC
Q 007165 196 ILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALER-GIPSTLGVLGTK 271 (615)
Q Consensus 196 ~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~er-g~~~~~~v~d~~ 271 (615)
.++++..+.+... .+..+.+|+|.|.|..-...+.. .-+|+++.+.-+.-+.+..-++. +....|..-|.-
T Consensus 58 teQv~nVLSll~~-----n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdlw 132 (199)
T KOG4058|consen 58 TEQVENVLSLLRG-----NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLW 132 (199)
T ss_pred HHHHHHHHHHccC-----CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhh
Confidence 3445555554322 33467999999999766555433 34566666655443333222221 234556665655
Q ss_pred CCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEE
Q 007165 272 RLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVY 315 (615)
Q Consensus 272 ~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvi 315 (615)
...+.+-.+=+|+-. -..++|.+ ..+..-|..|-.++-
T Consensus 133 K~dl~dy~~vviFga---es~m~dLe---~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 133 KVDLRDYRNVVIFGA---ESVMPDLE---DKLRTELPANTRVVA 170 (199)
T ss_pred hccccccceEEEeeh---HHHHhhhH---HHHHhhCcCCCeEEE
Confidence 555444334344322 22333333 333334555555553
No 403
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=51.10 E-value=7.7 Score=38.50 Aligned_cols=112 Identities=16% Similarity=0.245 Sum_probs=69.5
Q ss_pred eeeeccccchhHHhhhcCC-CcEEEEeccCCCC-----CchhHHhhcccccccccccccCCCC-----CCccceeccccc
Q 007165 462 NVMDMNSNLGGFAAALKDK-DVWVMNVAPVRMS-----ARLKIIYDRGLIGTVHDWCESFSTY-----PRTYDLLHAWKV 530 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~~-----~tL~~iy~RGliG~~hdwce~fstY-----prtyDl~Ha~~~ 530 (615)
-++|..+|.|.|.+++... |- .|++=++-. ..+.-+-.+||=.+.-=+|++.... |-+-|-||-.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd--~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPD--INFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTT--SEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred eEEEecCCCCHHHHHHHHHCCC--CCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 6899999999999999632 32 244444432 3555577778744444445554321 2344444421
Q ss_pred ccc------cccCCCChhhhhhhhcccccCCcEEEEE-cChhHHHHHHHHHhhc
Q 007165 531 FSE------IEERGCSFEDLLIEMDRMLRPEGFVIIR-DKSSIINYIRKFITAL 577 (615)
Q Consensus 531 fs~------~~~~~c~~~~i~~EmdRilRp~g~~iir-d~~~~~~~~~~~~~~~ 577 (615)
|.+ -.++|=--.+.|-+|-|+|+|||.+.++ |..+..+.+.+.+...
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 221 1234445567788999999999999996 7777888888888875
No 404
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.67 E-value=48 Score=35.38 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=51.3
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCC-----C-CCCCCceEEEec
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL-----P-YPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~L-----p-fpd~sFDlV~~s 286 (615)
+..+||=.|+|. |..+..+++. .+.. +...+.++...+++++.|....+... .... . .....+|+|+-.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~-~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWAREFGATHTVNSS-GTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCceEEcCC-CcCHHHHHHHHhCCCCCCEEEEC
Confidence 346799888742 3444445443 2222 33334556667788777753222111 1110 0 122358988732
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
- - . ...+.+..+.|++||.+++..
T Consensus 253 ~--g----~-~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 253 V--G----R-PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred C--C----C-HHHHHHHHHHhccCCEEEEEC
Confidence 2 1 1 236777889999999999865
No 405
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=47.89 E-value=44 Score=34.32 Aligned_cols=93 Identities=19% Similarity=0.127 Sum_probs=50.6
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecC----CCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGT----KRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~----~~Lpfpd~sFDlV~~s~~ 288 (615)
+..+||=+|+| .|..+..+++. .+.. +...+.++...+.+++.|....+...+. ..+. ....+|+|+-.-.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~-~~~g~d~vid~~G 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAA--AGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQ-NGRGVDVALEFSG 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHh-CCCCCCEEEECCC
Confidence 34678888874 23444444433 1222 2222445556677777775332211110 0011 2245898874321
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+.++.+.|+|||.+++..
T Consensus 197 -------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 197 -------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -------ChHHHHHHHHHhcCCCEEEEec
Confidence 1347888899999999999765
No 406
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=47.00 E-value=65 Score=34.40 Aligned_cols=93 Identities=10% Similarity=0.056 Sum_probs=53.2
Q ss_pred CCCeEEEECC--CCchHHHHHhcCCCccccCChhchhHHHHHHHH-HcCCCcEEEEecCCCC-----CCCCCCceEEEec
Q 007165 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRL-----PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~-erg~~~~~~v~d~~~L-----pfpd~sFDlV~~s 286 (615)
++.+||=.|+ |.|.++..+++. .+..+...+.+....+.++ +.|....+...+...+ ....+.+|+|+-.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~--~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKL--HGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 4578999987 367777777754 2333333344455556665 4565432221100011 0112468988743
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
- . ...+.+..+.|++||.+++..
T Consensus 236 v---G-----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 236 V---G-----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred C---C-----HHHHHHHHHHhccCCEEEEEC
Confidence 2 1 236788899999999999765
No 407
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=46.97 E-value=14 Score=39.46 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=76.7
Q ss_pred cccccch--hcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHH-HHhcC---CCcc
Q 007165 167 SDQHWMV--VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGA-YLLSH---DIIA 240 (615)
Q Consensus 167 ~~q~Wv~--~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~-~L~~~---~V~g 240 (615)
+...|+. .+|..+.|....++|..+...-. .+++.+.. .+..|.|+=+|.|+|+. .|..+ .|.+
T Consensus 154 Gd~gWV~~v~NGI~~~~d~t~~MFS~GN~~EK---~Rv~~~sc-------~~eviVDLYAGIGYFTlpflV~agAk~V~A 223 (351)
T KOG1227|consen 154 GDLGWVKHVQNGITQIWDPTKTMFSRGNIKEK---KRVLNTSC-------DGEVIVDLYAGIGYFTLPFLVTAGAKTVFA 223 (351)
T ss_pred ccccceeehhcCeEEEechhhhhhhcCcHHHH---HHhhhccc-------ccchhhhhhcccceEEeehhhccCccEEEE
Confidence 4456875 34667778777788888765333 23333322 22679999999999998 44432 6778
Q ss_pred ccCChhchhHHHHHHHHHcCCC--cEEEEecCCCCCCCCCCceEEEecccccccccchHHHHHHHHhccCCCeE
Q 007165 241 MSLAPNDVHENQIQFALERGIP--STLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGY 312 (615)
Q Consensus 241 vdis~~Dls~a~i~~A~erg~~--~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~ 312 (615)
++..|-.+ ++..+.+...++. ..+..+ ..+.+-++...|-|... .+|.-+.-.--+.++|||.|-
T Consensus 224 ~EwNp~sv-EaLrR~~~~N~V~~r~~i~~g-d~R~~~~~~~AdrVnLG-----LlPSse~~W~~A~k~Lk~egg 290 (351)
T KOG1227|consen 224 CEWNPWSV-EALRRNAEANNVMDRCRITEG-DNRNPKPRLRADRVNLG-----LLPSSEQGWPTAIKALKPEGG 290 (351)
T ss_pred EecCHHHH-HHHHHHHHhcchHHHHHhhhc-cccccCccccchheeec-----cccccccchHHHHHHhhhcCC
Confidence 88877544 3333333333321 112222 33445566778887633 345555556667788988665
No 408
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=46.90 E-value=67 Score=32.42 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=48.8
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
++.+||=.|+|. |..+..++.. .+.. +...+.+....+.+++.|....+. ....-......+|+|+... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~--~g~~~vi~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~d~vl~~~--~-- 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKA--AGAREVVGVDPDAARRELAEALGPADPVA--ADTADEIGGRGADVVIEAS--G-- 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCcEEEECCCHHHHHHHHHcCCCcccc--ccchhhhcCCCCCEEEEcc--C--
Confidence 346788888753 3444444443 1222 323344455556777666111111 1111111335689888432 1
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+.+..+.|+++|.++...
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEe
Confidence 1236788899999999998754
No 409
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=46.77 E-value=45 Score=35.45 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=47.4
Q ss_pred CCCeEEEECCCC-chHHHHHhcC-----CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSH-----DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRC 288 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~-----~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~ 288 (615)
++.+||=+|||. |.++..++.+ +|+++ +.++..++++++.+. ... .+ .+. ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~-----~~~~~k~~~a~~~~~--~~~-~~--~~~-~~~g~d~viD~~- 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVF-----GKHQEKLDLFSFADE--TYL-ID--DIP-EDLAVDHAFECV- 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEE-----eCcHhHHHHHhhcCc--eee-hh--hhh-hccCCcEEEECC-
Confidence 357899999763 3344443331 34444 344455566654322 111 11 111 112488887322
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-. ......+.+..++|++||.+++..
T Consensus 231 -G~--~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 231 -GG--RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred -CC--CccHHHHHHHHHhCcCCcEEEEEe
Confidence 10 012347888999999999999765
No 410
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=46.47 E-value=36 Score=29.77 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=48.0
Q ss_pred ECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccchHHHHH
Q 007165 222 VGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLL 301 (615)
Q Consensus 222 IGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~~L~ 301 (615)
+-||+|..+..+++ .+.+.+.++|+++.+...+.....-....+|+|+++- .....+.
T Consensus 4 ~~Cg~G~sTS~~~~---------------ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~P-------qv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVK---------------KMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGP-------QVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHH---------------HHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEECh-------hHHHHHH
Confidence 45888865554433 3346778889988888777655532335699998653 3344667
Q ss_pred HHHhccCCCeE-EEEEcCCCCC
Q 007165 302 ELDRLLRPGGY-FVYSSPEAYA 322 (615)
Q Consensus 302 ei~RvLkPGG~-Lvis~P~~~~ 322 (615)
++.+.+.+.+. +....|..|.
T Consensus 62 ~i~~~~~~~~~pv~~I~~~~Y~ 83 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDMMDYG 83 (96)
T ss_pred HHHHHhccCCCcEEEcChHhcc
Confidence 77765544444 5444444443
No 411
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=45.70 E-value=49 Score=29.70 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=51.8
Q ss_pred eEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCC--CCCCceEEEecccccccccc
Q 007165 218 NVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPY--PSRSFELAHCSRCRIDWLQR 295 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpf--pd~sFDlV~~s~~~l~~~~d 295 (615)
+|| +-||.|..+..+++. +.+.+.++|+++.+...+...++- ....||+|++.- +
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P-------Q 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP-------Q 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh-------H
Confidence 355 669999766544432 346778889988887777655542 234689998542 3
Q ss_pred hHHHHHHHHhccCCCeE-EEEEcCCCCC
Q 007165 296 DGILLLELDRLLRPGGY-FVYSSPEAYA 322 (615)
Q Consensus 296 ~~~~L~ei~RvLkPGG~-Lvis~P~~~~ 322 (615)
....+.++...+.+.|. +.+..+..|.
T Consensus 60 i~~~~~~i~~~~~~~~ipv~~I~~~~Y~ 87 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVVQIPPQAYI 87 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEEEeCHHHcC
Confidence 44467788888866555 4444444444
No 412
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=45.01 E-value=59 Score=34.13 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCC--CC-CC-CCCCceEEEecccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTK--RL-PY-PSRSFELAHCSRCR 289 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~--~L-pf-pd~sFDlV~~s~~~ 289 (615)
+.+||=+|+| .|.++..+++. .+.. +...+.++...+.+++.|....+...+.. .+ .. ....||+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARA--LGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 4678888864 22333444433 1222 22234455666777777753222111100 01 01 2246998884321
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
....+....+.|++||.+++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12356778899999999997653
No 413
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=44.33 E-value=1.5e+02 Score=31.64 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=68.4
Q ss_pred eeeeccccchhHHhhhcCC-C--cEEEEeccCCCC--CchhHHhhccccc--ccc-cccccCCCCCCccceecccccccc
Q 007165 462 NVMDMNSNLGGFAAALKDK-D--VWVMNVAPVRMS--ARLKIIYDRGLIG--TVH-DWCESFSTYPRTYDLLHAWKVFSE 533 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~-~--vwvmnvvp~~~~--~tL~~iy~RGliG--~~h-dwce~fstYprtyDl~Ha~~~fs~ 533 (615)
+|+|..+|+|=.++.|.+. | -.+|==|-..+- .... +-+-|+=+ ++| |=+|+- ...||+|=.+==|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s~~~~~v---~~kfd~IisNPPfh~ 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWASNLYEPV---EGKFDLIISNPPFHA 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEecccccc---cccccEEEeCCCccC
Confidence 8999999999999888755 3 456522211110 0001 22233333 233 334433 348999877776662
Q ss_pred cccC--CCChhhhhhhhcccccCCcEE--EEEcChhHHHHHHHHHhhcCccceeeccccccCcCCCCCceEEEEEe
Q 007165 534 IEER--GCSFEDLLIEMDRMLRPEGFV--IIRDKSSIINYIRKFITALKWDGWLSEVEPRIDALSSSEERVLIAKK 605 (615)
Q Consensus 534 ~~~~--~c~~~~i~~EmdRilRp~g~~--iird~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~~l~~~k 605 (615)
.+. .=-.+.|+-+-=+-|++||-+ ++.-....-.+++++-. ++++ +. .+++-+||=+.|
T Consensus 237 -G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~--la------~~~gf~Vl~a~k 299 (300)
T COG2813 237 -GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEV--LA------KNGGFKVLRAKK 299 (300)
T ss_pred -CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEE--EE------eCCCEEEEEEec
Confidence 111 000123566667889999954 44555555555555544 4422 21 123567776666
No 414
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=44.32 E-value=14 Score=37.62 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=27.9
Q ss_pred Cccceeccc-ccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 520 RTYDLLHAW-KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 520 rtyDl~Ha~-~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
=+||-|-.- .|=| . -+.+.+|=|+-|+|||||.+|+=+.+
T Consensus 144 ~s~DtVV~TlvLCS-v----e~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCS-V----EDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred CCeeeEEEEEEEec-c----CCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 367766433 3333 1 13677899999999999999997554
No 415
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=43.66 E-value=27 Score=38.47 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=66.9
Q ss_pred ecCCCCCccCCcHHHHHHHHHHHh----cCCCcccCCCCCCCeEEEECCCCchHHHHHh-c-CCCccccCChhchhHHHH
Q 007165 180 NFPGGGTHFHDGADKYILALARML----KFPSDKLNNGGNIRNVLDVGCGVASFGAYLL-S-HDIIAMSLAPNDVHENQI 253 (615)
Q Consensus 180 ~Fpggg~~F~~~a~~y~~~i~~lL----~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~-~-~~V~gvdis~~Dls~a~i 253 (615)
.++..+..|-+....+...+.-++ ..... .....-+|||.=+|+|.=+...+ + .. ...+..+|++++.+
T Consensus 13 ~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~---~~~~~~~~lDalaasGvR~iRy~~E~~~--~~~v~~NDi~~~a~ 87 (377)
T PF02005_consen 13 TIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKE---KRKGPIRVLDALAASGVRGIRYAKELAG--VDKVTANDISPEAV 87 (377)
T ss_dssp STTTTSSSS--GGGHHHHHHHHHH---HHHHHH---CH-S-EEEEETT-TTSHHHHHHHHH-SS--ECEEEEEES-HHHH
T ss_pred ecCCCCCcccCcchhcccceeehhHHHHHHhhh---hhcCCceEEeccccccHHHHHHHHHcCC--CCEEEEecCCHHHH
Confidence 345556666666655555544322 11000 00123579999999995444443 3 11 12334445555555
Q ss_pred HHHHH----cCCCc---EEEEecCCCCC-CCCCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 254 QFALE----RGIPS---TLGVLGTKRLP-YPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 254 ~~A~e----rg~~~---~~~v~d~~~Lp-fpd~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+..++ +++.. .+...|+..+- ...+.||+|-. .=...+..+|..+.+.+|.||+|.++..+
T Consensus 88 ~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 88 ELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp HHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 54443 34443 55566654432 24578999972 22334567999999999999999998753
No 416
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=43.56 E-value=36 Score=30.31 Aligned_cols=77 Identities=18% Similarity=0.098 Sum_probs=52.3
Q ss_pred EEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccccchHH
Q 007165 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGI 298 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~~d~~~ 298 (615)
|| +-||.|..+..+. ..+.+.++++|+++.+.......++-....+|+|+.. |...-
T Consensus 3 Il-l~C~~GaSSs~la---------------~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~-------PQv~~ 59 (99)
T cd05565 3 VL-VLCAGGGTSGLLA---------------NALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILA-------PQMAS 59 (99)
T ss_pred EE-EECCCCCCHHHHH---------------HHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEc-------ChHHH
Confidence 44 5678885444443 3455778899999988887766665445678988744 33455
Q ss_pred HHHHHHhccCCCeEEEEEcC
Q 007165 299 LLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 299 ~L~ei~RvLkPGG~Lvis~P 318 (615)
.+.++...+.+-|.-+...+
T Consensus 60 ~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 60 YYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHhhhcCCCEEEeC
Confidence 78888888888887665443
No 417
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=43.34 E-value=54 Score=35.21 Aligned_cols=92 Identities=18% Similarity=0.130 Sum_probs=50.8
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCC-----CCCCCCceEEEeccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-----pfpd~sFDlV~~s~~ 288 (615)
..+||=+|+| .|.++..++.. .+. .+...+.++...+++++.|....+...+ ..+ ....+.+|+|+-.-.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVA--AGASQVVAVDLNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECCC
Confidence 4678888875 23444445543 122 1333355666677887777543222111 110 011236898874321
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+....+.|++||.+++..
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEc
Confidence 1246778889999999999765
No 418
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=43.13 E-value=3.1e+02 Score=28.45 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCeEEEECCCCchHHHHHhcC-CCccccCChhchhHHHHHHHHHcC----CCcEEEEecCC-CC-------CCCCCCceE
Q 007165 216 IRNVLDVGCGVASFGAYLLSH-DIIAMSLAPNDVHENQIQFALERG----IPSTLGVLGTK-RL-------PYPSRSFEL 282 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~-~V~gvdis~~Dls~a~i~~A~erg----~~~~~~v~d~~-~L-------pfpd~sFDl 282 (615)
...|+.+|||.=.-...|... ++...++.-.++-+...+...+.+ .+..++..|.. .+ .|..+. -.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~-pt 160 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA-PT 160 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC-Ce
Confidence 357999999998877777533 344444433332222222223222 23445555543 11 121122 23
Q ss_pred EEecccccccccch--HHHHHHHHhccCCCeEEEEEcCC
Q 007165 283 AHCSRCRIDWLQRD--GILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 283 V~~s~~~l~~~~d~--~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
++...+++.|++.. ..+|..+.+...||+.+++....
T Consensus 161 l~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 161 AWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 44456678888755 46899999988899999986533
No 419
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=42.96 E-value=31 Score=38.55 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=54.7
Q ss_pred eeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHhhc----cc--c-cccccccccCC-CCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIYDR----GL--I-GTVHDWCESFS-TYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy~R----Gl--i-G~~hdwce~fs-tYprtyDl~Ha~ 528 (615)
..|+||.||-||.+.++.. ..- .|+-+|- ++-|..+-++ |+ | -+-.|..+ ++ ..+.+||+|=.|
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVD 314 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEEC
Confidence 3699999999998766643 222 3455553 3556555433 43 1 12234432 22 124679988653
Q ss_pred ccccccc---cC-----CC----------ChhhhhhhhcccccCCcEEEEE
Q 007165 529 KVFSEIE---ER-----GC----------SFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 529 ~~fs~~~---~~-----~c----------~~~~i~~EmdRilRp~g~~iir 561 (615)
---|.+. .+ +- .-..||-+.=+.|+|||.+++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2222110 00 00 1245677888999999999987
No 420
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=42.92 E-value=61 Score=33.90 Aligned_cols=85 Identities=25% Similarity=0.191 Sum_probs=45.7
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
..+||=+||| .|.++..++.. .+.. +...+..+..++.|.... ..+.... ....||+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~--~G~~~v~~~~~~~~rl~~a~~~~------~i~~~~~--~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKA--AGGSPPAVWETNPRRRDGATGYE------VLDPEKD--PRRDYRAIYDASG----- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHhhhhcc------ccChhhc--cCCCCCEEEECCC-----
Confidence 3568888875 45566666543 1111 111133344444444321 1121111 2246898884431
Q ss_pred cchHHHHHHHHhccCCCeEEEEEc
Q 007165 294 QRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 294 ~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
....+..+.+.|++||.+++..
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEe
Confidence 1236788899999999999865
No 421
>PLN02366 spermidine synthase
Probab=41.89 E-value=27 Score=37.28 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCceeeeeeccccchhHHhhhcCCC-cEEEEeccCCC------CCchhHHhhccc----ccccccccccC-CCC-CCccc
Q 007165 457 KNTFRNVMDMNSNLGGFAAALKDKD-VWVMNVAPVRM------SARLKIIYDRGL----IGTVHDWCESF-STY-PRTYD 523 (615)
Q Consensus 457 ~~~~Rnvmdm~a~~ggfaaal~~~~-vwvmnvvp~~~------~~tL~~iy~RGl----iG~~hdwce~f-stY-prtyD 523 (615)
...-++|+++..|-|+.+..|.+.| +..+-+|=.+. ...++-+ ..|+ +=+.+.=.-.| .+. .++||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 4567899999999999999998764 44332322221 1223322 1111 11111111111 223 47899
Q ss_pred eeccccccccccc-CCCChhhhhhhhcccccCCcEEEEE
Q 007165 524 LLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 524 l~Ha~~~fs~~~~-~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+|-.+. +..... ..---.+.+-.+-|.|+|+|.++++
T Consensus 168 vIi~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 997654 221100 0000235677889999999999875
No 422
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=41.33 E-value=41 Score=35.77 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=42.1
Q ss_pred CCCceEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC-CCCCChhH-HHHHHHHHHHHhhcceEE
Q 007165 277 SRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE-AYAHDPEN-RRIWNAMYDLLKSMCWKI 345 (615)
Q Consensus 277 d~sFDlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~-~~~~~~e~-~~~w~~l~~La~~l~W~l 345 (615)
.+-||+|+.+....|++.. ++.++++|||.|++-+.- ...-..|. ...-.++.++|+..+|+-
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p------~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKP------ELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred cCCCCEEEEhhhhHhhcch------HHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 3779999987754554432 377899999999997742 11222333 345578888888887753
No 423
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=40.92 E-value=30 Score=38.09 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccC
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSL 243 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdi 243 (615)
....|+|+|.|.|.++..|.=. .|.++|-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEG 184 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEecc
Confidence 4578999999999999998632 4444443
No 424
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=40.25 E-value=45 Score=37.34 Aligned_cols=97 Identities=18% Similarity=0.188 Sum_probs=52.5
Q ss_pred eeeeeccccchhHHhhhcC---CCcEEEEeccCCC-CCchhHHh----hccc--c-cccccccccCCCCCCccceeccc-
Q 007165 461 RNVMDMNSNLGGFAAALKD---KDVWVMNVAPVRM-SARLKIIY----DRGL--I-GTVHDWCESFSTYPRTYDLLHAW- 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~---~~vwvmnvvp~~~-~~tL~~iy----~RGl--i-G~~hdwce~fstYprtyDl~Ha~- 528 (615)
..|+|+.||-||++..|.. ..- .|+-++- +.-|..+- ..|+ | -+-+|..+.. -+.+||++=.|
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 4699999999998765542 111 2333342 23333322 2243 1 1223433221 13579988643
Q ss_pred -----cccccc-----ccCCCC-------hhhhhhhhcccccCCcEEEEEc
Q 007165 529 -----KVFSEI-----EERGCS-------FEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 -----~~fs~~-----~~~~c~-------~~~i~~EmdRilRp~g~~iird 562 (615)
|.|..- ....-. -..||-++=|+|||||.+++..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 443310 000001 1358999999999999999984
No 425
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=40.11 E-value=27 Score=38.13 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred hcCCeeecCCCCCccCCcHHHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhc
Q 007165 174 VNGEKINFPGGGTHFHDGADKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLS 235 (615)
Q Consensus 174 ~~g~~~~Fpggg~~F~~~a~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~ 235 (615)
..|+.+.-|.-+..|......+.-..-+.+. ......++++|.|.|.++..++.
T Consensus 44 ~~GDFiTApels~lFGella~~~~~~wq~~g--------~p~~~~lvEiGaG~G~l~~DiL~ 97 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQFLQLWQELG--------RPAPLKLVEIGAGRGTLASDILR 97 (370)
T ss_pred ccCCeeechhHHHHHHHHHHHHHHHHHHHhc--------CCCCceEEEeCCCcChHHHHHHH
Confidence 3566666666666666554433332222222 12345799999999999988874
No 426
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=39.89 E-value=74 Score=33.79 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=49.2
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecC--CCC----C-C-CCCCce----
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGT--KRL----P-Y-PSRSFE---- 281 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~--~~L----p-f-pd~sFD---- 281 (615)
++.+||=+|+|. |..+..++.. .+..+...+.++...+++++.|....+...+. ..+ . + ....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 356899999853 4454555543 12223333445566677877775432221110 000 0 0 112344
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
+|+-.- . ....+..+.++|++||++++..
T Consensus 244 ~v~d~~------g-~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 244 KIFECS------G-SKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred EEEECC------C-ChHHHHHHHHHHhcCCeEEEEC
Confidence 444111 1 1236777888999999999875
No 427
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=39.79 E-value=60 Score=36.67 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCCCeEEEECCCCc--hHHHHHhcCCCccccCChhchhHHHHHHHHH--cC----CCcEE--EEecCCCCCCCC-CCceE
Q 007165 214 GNIRNVLDVGCGVA--SFGAYLLSHDIIAMSLAPNDVHENQIQFALE--RG----IPSTL--GVLGTKRLPYPS-RSFEL 282 (615)
Q Consensus 214 ~~~~~VLDIGCGtG--~~a~~L~~~~V~gvdis~~Dls~a~i~~A~e--rg----~~~~~--~v~d~~~Lpfpd-~sFDl 282 (615)
-.+..++|+|.|.| .++..+.-++ +--.++-+|.+.+|..++.. ++ ..... .+.--..+|.+. +.||+
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceee
Confidence 34577889988877 3444444321 11112223445555444322 11 01111 122234566544 45999
Q ss_pred EEecccccccccchHH---HH-HHHHhccCCCeEEEEEcCCC
Q 007165 283 AHCSRCRIDWLQRDGI---LL-LELDRLLRPGGYFVYSSPEA 320 (615)
Q Consensus 283 V~~s~~~l~~~~d~~~---~L-~ei~RvLkPGG~Lvis~P~~ 320 (615)
|+|++. +++...... .. .-..+..++||++++..+..
T Consensus 278 vi~ah~-l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 278 VICAHK-LHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EEeeee-eeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999994 666654422 33 33456789999999987654
No 428
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=39.50 E-value=27 Score=35.23 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=55.9
Q ss_pred eeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchh-HHhhccccccc--------------ccccccCCCC---C-Cc
Q 007165 462 NVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLK-IIYDRGLIGTV--------------HDWCESFSTY---P-RT 521 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~-~iy~RGliG~~--------------hdwce~fstY---p-rt 521 (615)
.|+|-.+|.|--|..|.++.. +|+-+|- +.-+. ..-++|+-... +-+|.-|-.. + -+
T Consensus 40 rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~ 116 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLAD 116 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCCC
Confidence 699999999999999987643 4444442 22222 12355553221 1122222221 1 26
Q ss_pred cceecccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 522 YDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 522 yDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
||++-..++|..+.. ..-...+-.|.++|+|||.+++
T Consensus 117 fd~v~D~~~~~~l~~--~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 117 VDAVYDRAALIALPE--EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred eeEEEehHhHhhCCH--HHHHHHHHHHHHHcCCCCeEEE
Confidence 777777776664432 1246788999999999997554
No 429
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=39.24 E-value=45 Score=36.37 Aligned_cols=73 Identities=14% Similarity=0.026 Sum_probs=43.8
Q ss_pred CCCCeEEEECCCCchHHHHHh--cCCCccccCChhchhHH------HHHHHHHcCC---CcEEEEecCCCCCCC-CCCce
Q 007165 214 GNIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHEN------QIQFALERGI---PSTLGVLGTKRLPYP-SRSFE 281 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~--~~~V~gvdis~~Dls~a------~i~~A~erg~---~~~~~v~d~~~Lpfp-d~sFD 281 (615)
.++..|+|-=-|||++....+ ++.|.|.||...+++.. ....-++.|. ...+..+|...-|+- .-.||
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 356789999999997654433 55778888877666511 1011122232 234466776666653 35799
Q ss_pred EEEec
Q 007165 282 LAHCS 286 (615)
Q Consensus 282 lV~~s 286 (615)
+|+|-
T Consensus 287 aIvcD 291 (421)
T KOG2671|consen 287 AIVCD 291 (421)
T ss_pred EEEeC
Confidence 99983
No 430
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=38.65 E-value=5.1 Score=34.99 Aligned_cols=39 Identities=23% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.+.|||+|-|+-=+ ++ ....-+..+=+.|+|||.|++-|
T Consensus 67 ~~~~dli~iDg~H~--~~---~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 67 DGPIDLIFIDGDHS--YE---AVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp H--EEEEEEES-----HH---HHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCCEEEEEECCCCC--HH---HHHHHHHHHHHHcCCCeEEEEeC
Confidence 38999999888322 11 13333455566799999999877
No 431
>PRK10742 putative methyltransferase; Provisional
Probab=37.79 E-value=85 Score=32.71 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=39.5
Q ss_pred eEEEECCCCchHHHHHhcC--CCccccCChhchhHHHHHHHHHc-------C----CCcEEEEecCCCC-CCCCCCceEE
Q 007165 218 NVLDVGCGVASFGAYLLSH--DIIAMSLAPNDVHENQIQFALER-------G----IPSTLGVLGTKRL-PYPSRSFELA 283 (615)
Q Consensus 218 ~VLDIGCGtG~~a~~L~~~--~V~gvdis~~Dls~a~i~~A~er-------g----~~~~~~v~d~~~L-pfpd~sFDlV 283 (615)
+|||.=+|+|..+..++.. .|+.++-++.-. +.++...++ + -++.+..+|...+ .-...+||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~va--alL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVA--ALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHH--HHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEE
Confidence 7999999999999888865 566665554322 222222222 1 1245555553222 2122479999
Q ss_pred Eecc
Q 007165 284 HCSR 287 (615)
Q Consensus 284 ~~s~ 287 (615)
+.--
T Consensus 169 YlDP 172 (250)
T PRK10742 169 YLDP 172 (250)
T ss_pred EECC
Confidence 9655
No 432
>PF13051 DUF3912: Protein of unknown function (DUF3912)
Probab=37.48 E-value=7.8 Score=31.00 Aligned_cols=10 Identities=50% Similarity=1.597 Sum_probs=8.2
Q ss_pred cccccccccc
Q 007165 505 IGTVHDWCES 514 (615)
Q Consensus 505 iG~~hdwce~ 514 (615)
.|.+|.|||.
T Consensus 57 vgqfh~wceq 66 (68)
T PF13051_consen 57 VGQFHEWCEQ 66 (68)
T ss_pred HHHHHHHHhh
Confidence 5789999984
No 433
>PF07629 DUF1590: Protein of unknown function (DUF1590); InterPro: IPR011481 These hypothetical proteins in Rhodopirellula baltica have a conserved C-terminal region.
Probab=36.03 E-value=21 Score=24.66 Aligned_cols=19 Identities=42% Similarity=0.920 Sum_probs=16.4
Q ss_pred cCCCCCCCCCCcccCCCCC
Q 007165 120 RHCPPPERRYNCLVPPPKG 138 (615)
Q Consensus 120 r~Cp~~~~~~~Clvp~P~~ 138 (615)
-||||++-.++-+.|.|+.
T Consensus 5 a~~pppeislna~fptppa 23 (32)
T PF07629_consen 5 ADCPPPEISLNARFPTPPA 23 (32)
T ss_pred CCCCCCcceeccccCCChh
Confidence 5899988889999999974
No 434
>PRK03612 spermidine synthase; Provisional
Probab=35.94 E-value=43 Score=38.40 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=63.7
Q ss_pred CceeeeeeccccchhHHhhhcCCCcEEEEeccCCC-CCchhHHhh-------------ccccccccccccc-CCCCCCcc
Q 007165 458 NTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRM-SARLKIIYD-------------RGLIGTVHDWCES-FSTYPRTY 522 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~-~~tL~~iy~-------------RGliG~~hdwce~-fstYprty 522 (615)
.+-++|+|..+|-|+.+..+.+.+. |-.|+=++- ++-+.+.-+ ..=+-+.+.=... ..+.+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4567899999999999987765531 011111221 112222111 0001111111111 12456899
Q ss_pred ceeccccccccccc-CCCChhhhhhhhcccccCCcEEEEEc-----ChhHHHHHHHHHhhcCcc
Q 007165 523 DLLHAWKVFSEIEE-RGCSFEDLLIEMDRMLRPEGFVIIRD-----KSSIINYIRKFITALKWD 580 (615)
Q Consensus 523 Dl~Ha~~~fs~~~~-~~c~~~~i~~EmdRilRp~g~~iird-----~~~~~~~~~~~~~~~~w~ 580 (615)
|+|-.|--...... .+=--++.+-++=|+|+|||.+++.- ..+.+.++.+.++.....
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 99987732110000 00001345667789999999999953 356666777777766443
No 435
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=35.69 E-value=38 Score=34.09 Aligned_cols=95 Identities=14% Similarity=0.160 Sum_probs=53.7
Q ss_pred eeeeeccccchhHHhhhcCC--CcEEEEeccCCCCCchhHHhhcccccc--------------cccccccCCCCC----C
Q 007165 461 RNVMDMNSNLGGFAAALKDK--DVWVMNVAPVRMSARLKIIYDRGLIGT--------------VHDWCESFSTYP----R 520 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~--~vwvmnvvp~~~~~tL~~iy~RGliG~--------------~hdwce~fstYp----r 520 (615)
..|+|..+|-|--|..|.++ .|.-+=++|+.-. .+ --+.|+-.. .+=+|--|-.++ -
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~-~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE-QF--FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH-HH--HHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 47999999999999999866 6776666665211 00 001222110 111232222222 2
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcEEEE
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII 560 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii 560 (615)
+||++=..++|-.+.. -.-...+-.|-|.|||||.+++
T Consensus 113 ~fD~i~D~~~~~~l~~--~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALPE--EMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCCH--HHHHHHHHHHHHHcCCCCeEEE
Confidence 4666655555543321 1235678889999999996443
No 436
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=35.64 E-value=1.1e+02 Score=32.29 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=47.8
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCC--CC--CCCCCCce-EEEecc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTK--RL--PYPSRSFE-LAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~--~L--pfpd~sFD-lV~~s~ 287 (615)
+..+||=.|+|. |..+..+++. .+.. +...+.++...+++++.|....+...+.. .+ ......+| +|+-.-
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 346788888643 2333444433 1222 22223445555677666653222111000 00 01224577 554221
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ....+.+..+.|++||.+++..
T Consensus 238 ------G-~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 238 ------G-VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred ------C-CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1347888899999999999875
No 437
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=35.29 E-value=1.2e+02 Score=31.59 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=50.2
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceEEEe
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDlV~~ 285 (615)
+..+||-.|+|. |..+..++.. .+..+.....++...+.+++.+....+ +..... .+...+|+++.
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~v~---~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADDTI---NVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCEEe---cCcccCHHHHHHHHhCCCCCCEEEE
Confidence 346789888763 5566666654 122222222334455555555532211 111111 13356899985
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... ....+.++.+.|+++|.++...
T Consensus 234 ~~g-------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATG-------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCC-------CHHHHHHHHHHHhcCCEEEEEc
Confidence 421 1346788899999999998754
No 438
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=35.20 E-value=70 Score=34.26 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCeEEEEC--CCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEE--Eec-CCCC--CCCCCCceEEEeccc
Q 007165 216 IRNVLDVG--CGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLG--VLG-TKRL--PYPSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIG--CGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~--v~d-~~~L--pfpd~sFDlV~~s~~ 288 (615)
+.+||=.| .|.|.++.+|+++. +......-.+.+..+++++.|....+. ..| .+.. ......+|+|+..-
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v- 219 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV- 219 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC-
Confidence 57899998 45668888888752 111111122333345777777543332 111 0111 11224699998553
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
-...+.+..+.|++||.++....
T Consensus 220 -------G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 220 -------GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred -------CHHHHHHHHHHhccCCEEEEEec
Confidence 24577889999999999998653
No 439
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=35.16 E-value=64 Score=36.03 Aligned_cols=88 Identities=10% Similarity=-0.010 Sum_probs=49.4
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDWL 293 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~~ 293 (615)
.+++|+=+|+|. |.....++.. .|..+.-.|.++.....|.+.|.... +.... . ..+|+|+..-
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~--~Ga~ViV~d~d~~R~~~A~~~G~~~~----~~~e~-v--~~aDVVI~at------ 265 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRG--QGARVIVTEVDPICALQAAMEGYEVM----TMEEA-V--KEGDIFVTTT------ 265 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECChhhHHHHHhcCCEEc----cHHHH-H--cCCCEEEECC------
Confidence 457899999995 4333333322 12223333455555567777665221 11111 1 3579998543
Q ss_pred cchHHHHH-HHHhccCCCeEEEEEcC
Q 007165 294 QRDGILLL-ELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 294 ~d~~~~L~-ei~RvLkPGG~Lvis~P 318 (615)
... ..+. +..+.+|+||.++....
T Consensus 266 G~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 266 GNK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 122 3454 45899999999998774
No 440
>PLN02740 Alcohol dehydrogenase-like
Probab=35.03 E-value=1e+02 Score=33.34 Aligned_cols=94 Identities=15% Similarity=0.056 Sum_probs=50.3
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCC-CC-----CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~-~L-----pfpd~sFDlV~~s 286 (615)
.+.+||=+|+| .|..+..+++. .+. .+...+.+....+.+++.|....+...+.. .+ .+..+.+|+|+-.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 35679999875 22333444433 122 123334556667888777764332211100 00 0112368988743
Q ss_pred ccccccccchHHHHHHHHhccCCC-eEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~Lvis~ 317 (615)
-. ....+.+..+.+++| |.+++..
T Consensus 276 ~G-------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 276 AG-------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CC-------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 21 124677888899997 9988765
No 441
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=35.01 E-value=1.1e+02 Score=33.07 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=55.4
Q ss_pred CeEEEECCCC-chHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCC-----CCCCC-CCceEEEecccc
Q 007165 217 RNVLDVGCGV-ASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKR-----LPYPS-RSFELAHCSRCR 289 (615)
Q Consensus 217 ~~VLDIGCGt-G~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~-----Lpfpd-~sFDlV~~s~~~ 289 (615)
.+|+=+|||+ |.++..+++. .-+..+...|.++..++.|++.+....+.....+. +.... ..||+|+=.- .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~-G 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV-G 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC-C
Confidence 3899999996 5555444432 11122333367778888998843221111110100 01112 3699887433 1
Q ss_pred cccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
....+..+.+++||||.+++..-.
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 234899999999999999987643
No 442
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=34.84 E-value=1.1e+02 Score=31.71 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=52.6
Q ss_pred CCCeEEEECC--CCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCC-----CCCCCCceEEEecc
Q 007165 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-----pfpd~sFDlV~~s~ 287 (615)
++.+||=.|. |.|.++..++.. .+..+.....+....+++++.|....+... ...+ ....+.+|+|+-..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~--~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~-~~~~~~~v~~~~~~gvd~vld~~ 219 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKI--KGCKVIGCAGSDDKVAWLKELGFDAVFNYK-TVSLEEALKEAAPDGIDCYFDNV 219 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHcCCCEEEeCC-CccHHHHHHHHCCCCcEEEEECC
Confidence 3467888874 455666666654 233333334445556777776653322211 1111 01124689887432
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ...+.+..+.|+++|.++...
T Consensus 220 g--------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 220 G--------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--------HHHHHHHHHhhccCCEEEEEc
Confidence 1 246788999999999998754
No 443
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=34.51 E-value=87 Score=32.57 Aligned_cols=123 Identities=12% Similarity=0.250 Sum_probs=78.7
Q ss_pred ceeeeeeccccchhHHhhhcCC-C-cEEEEeccCCCC------Cc--hhHHhhcc--cccccccccccCCCCCCccceec
Q 007165 459 TFRNVMDMNSNLGGFAAALKDK-D-VWVMNVAPVRMS------AR--LKIIYDRG--LIGTVHDWCESFSTYPRTYDLLH 526 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~-~-vwvmnvvp~~~~------~t--L~~iy~RG--liG~~hdwce~fstYprtyDl~H 526 (615)
....|+|+.||-|..+=+|..+ + +=+- -|=.+.. -+ |.-.-+|. +=+=..+|+.++.. .+||+|=
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~-~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIV-GVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEE-EEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEE
Confidence 3677888888888665555544 2 2111 1111100 01 11122332 11334567776654 4788887
Q ss_pred cccccccc--------------ccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHHHHHHhhcCccceee
Q 007165 527 AWKVFSEI--------------EERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYIRKFITALKWDGWLS 584 (615)
Q Consensus 527 a~~~fs~~--------------~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~~~~~~~~~w~~~~~ 584 (615)
++==|=.. +.-.|++++++-=-=++|+|+|.+.+==..+-+.++-.++++++|+.+..
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEE
Confidence 65433211 12358999999999999999999999999999999999999999997643
No 444
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=34.47 E-value=73 Score=35.42 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=53.7
Q ss_pred eeeeeccccchhHHhhhcCC-CcEEEEeccCCC-CCchhHHhhc----cc-cc-ccccccccCCCC-CCccceecccccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK-DVWVMNVAPVRM-SARLKIIYDR----GL-IG-TVHDWCESFSTY-PRTYDLLHAWKVF 531 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~~-~~tL~~iy~R----Gl-iG-~~hdwce~fstY-prtyDl~Ha~~~f 531 (615)
..|+|+.||-||++..|... +- -.|+-++. +.-|..+-++ |+ +- +-+|-.+....+ +.+||+|=.+-=+
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~--~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ--AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 46999999999999877643 11 13444443 2444333221 22 11 123433321222 3679998644322
Q ss_pred ccc---ccC------C---------CChhhhhhhhcccccCCcEEEEE
Q 007165 532 SEI---EER------G---------CSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 532 s~~---~~~------~---------c~~~~i~~EmdRilRp~g~~iir 561 (615)
|.. ..+ + .....+|-+.=+.|+|||.+++.
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 210 000 0 11236788999999999999976
No 445
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=34.36 E-value=58 Score=32.87 Aligned_cols=100 Identities=9% Similarity=0.040 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCchHHHHHhc--------CCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCC------CCCCCc
Q 007165 215 NIRNVLDVGCGVASFGAYLLS--------HDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSF 280 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~--------~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp------fpd~sF 280 (615)
.++.|+++|.-.|..+.+.++ ..|.++|++-....++.++ -..+.+..++..+.. ...+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 457899999988876665552 2567777765555444322 445677776644322 011222
Q ss_pred eEEEecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 281 ELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 281 DlV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
--|+...-.-|+....-..|+-..++|..|-|+++.+.+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEeccc
Confidence 233333324565555556777788999999999987644
No 446
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=34.15 E-value=1e+02 Score=32.12 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=47.8
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceEEE
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDlV~ 284 (615)
+..+||-.|+| .|..+..+++.. +. .+...+.+....+.+++.|.... .+..... .+.+.+|+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~--g~~~v~~~~~~~~~~~~~~~~g~~~v---i~~~~~~~~~~i~~~~~~~~~d~vl 241 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLL--GAARIIAVDSNPERLDLAKEAGATDI---INPKNGDIVEQILELTGGRGVDCVI 241 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhCCcEE---EcCCcchHHHHHHHHcCCCCCcEEE
Confidence 34678887764 345555555431 21 12222333444455555553211 1111111 1235799888
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-... ....+.++.+.|+++|.++...
T Consensus 242 d~~g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 242 EAVG-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EccC-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 4321 1247888899999999998754
No 447
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=34.08 E-value=85 Score=35.37 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCcccCCCCCCCeEEEECCCCchHHHHHhcC---CCccccCChhch
Q 007165 193 DKYILALARMLKFPSDKLNNGGNIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDV 248 (615)
Q Consensus 193 ~~y~~~i~~lL~l~~~~L~~~~~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dl 248 (615)
.+|...+...+.-....+ ..+ ...|||||.|||.++.....+ .|+++++-..+.
T Consensus 46 iky~~gi~~tIte~kh~~-~~g-kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~ 102 (636)
T KOG1501|consen 46 IKYRLGIEKTITEPKHVL-DIG-KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMV 102 (636)
T ss_pred HHHHHHHHHHhcccceec-cCc-eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHH
Confidence 345555555544222111 112 246899999999877665533 566665544433
No 448
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=34.04 E-value=79 Score=33.86 Aligned_cols=43 Identities=23% Similarity=0.143 Sum_probs=28.9
Q ss_pred CCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc
Q 007165 216 IRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER 259 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er 259 (615)
+..++|.=+|.|..+..++++--. ..+.+.|.++..++.++++
T Consensus 21 ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 21 DGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred CCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 467999999999999988864101 2233445566666777654
No 449
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=33.93 E-value=1.3e+02 Score=31.56 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=51.9
Q ss_pred CCCeEEEECC--CCchHHHHHhcCCCccccCChhchhHHHHHHHHH-cCCCcEEEEecCCCC-----CCCCCCceEEEec
Q 007165 215 NIRNVLDVGC--GVASFGAYLLSHDIIAMSLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGC--GtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~e-rg~~~~~~v~d~~~L-----pfpd~sFDlV~~s 286 (615)
++.+||=.|+ |.|.++..++.. .+..+.....+....+++++ .|....+...+...+ ....+.+|+|+-.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~--~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~ 228 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKL--KGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDN 228 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHH--cCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEEC
Confidence 4577998886 456666666654 22333222334455566665 565322221110010 0112568988743
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. . ...+.+..+.|+++|.++...
T Consensus 229 ~---g-----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 229 V---G-----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred C---C-----HHHHHHHHHHhccCcEEEEec
Confidence 2 1 246788899999999999754
No 450
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=33.45 E-value=61 Score=34.82 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=37.5
Q ss_pred CcEEEEecCCCCCCCC-------CCceEEEeccccccc-----ccchHHHHHHHHhccCCCeEEEEEc-CCCCC
Q 007165 262 PSTLGVLGTKRLPYPS-------RSFELAHCSRCRIDW-----LQRDGILLLELDRLLRPGGYFVYSS-PEAYA 322 (615)
Q Consensus 262 ~~~~~v~d~~~Lpfpd-------~sFDlV~~s~~~l~~-----~~d~~~~L~ei~RvLkPGG~Lvis~-P~~~~ 322 (615)
++.|.+.|+..+.-++ .+.|+|...+. ++- +..--++|..+...++||-.|+|++ |..|.
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFT-lNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSYS 248 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFT-LNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSYS 248 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHH-HHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCch
Confidence 4567777766554322 24566654442 221 2233469999999999999999987 44443
No 451
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=33.23 E-value=1.4e+02 Score=31.37 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCC------CC--CCCCCCceEEE
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTK------RL--PYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~------~L--pfpd~sFDlV~ 284 (615)
+..+||-.|+|. |..+..+++. .+.. +.....++...+++++.+....+...+.. .+ ......||+|+
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKA--FGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 346677777653 4455555543 2222 22222334444555555543222111100 00 12335699998
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
-.. . ....+.+..+.|+++|.++...
T Consensus 240 d~~-g------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECT-G------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECC-C------CHHHHHHHHHHhhcCCEEEEEc
Confidence 432 1 1236788899999999998765
No 452
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=33.08 E-value=72 Score=34.24 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=45.1
Q ss_pred CCeEEEECCC-CchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+.+||-.|+| .|.++..+++. .+++++.+. ....+.+++.|....+...+...+.-..+.+|+|+-.-
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~----~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~---- 255 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS----NKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV---- 255 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc----chhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC----
Confidence 4678888875 33444445443 233332221 12223445556432221111101100012488887432
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ....+.+..+.|++||.++...
T Consensus 256 --g-~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 256 --S-AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred --C-CHHHHHHHHHHhcCCcEEEEeC
Confidence 1 1236788899999999999765
No 453
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=32.79 E-value=43 Score=34.33 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=15.8
Q ss_pred CeEEEECCCCchHHHHHhc
Q 007165 217 RNVLDVGCGVASFGAYLLS 235 (615)
Q Consensus 217 ~~VLDIGCGtG~~a~~L~~ 235 (615)
-+|+|+|+|.|.++..+++
T Consensus 20 ~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp EEEEEES-TTSHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHH
Confidence 5799999999999988764
No 454
>PHA01634 hypothetical protein
Probab=32.54 E-value=49 Score=31.23 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=36.1
Q ss_pred CCCeEEEECCCCchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEec----CCCCCCCCCCceEEEe
Q 007165 215 NIRNVLDVGCGVASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLG----TKRLPYPSRSFELAHC 285 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d----~~~Lpfpd~sFDlV~~ 285 (615)
..++|+|||++.|..+.+++-+ .|.+++. ++...+..++ +.... .+.| ...++-.-+.||+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~-----~~kl~k~~ee-n~k~n-nI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEK-----EEKLRKKWEE-VCAYF-NICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEecc-----CHHHHHHHHH-Hhhhh-eeeeceeecccccccCCCcceEEE
Confidence 3578999999999988887632 5666644 4444444444 22111 1111 2234433356887764
No 455
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=32.22 E-value=39 Score=36.34 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=45.0
Q ss_pred eeeeeccccchhHHhhhcCC---C--cEEEEeccCCCCCchhH----Hhhcccc--c-ccccccccCCCCCCccceeccc
Q 007165 461 RNVMDMNSNLGGFAAALKDK---D--VWVMNVAPVRMSARLKI----IYDRGLI--G-TVHDWCESFSTYPRTYDLLHAW 528 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~---~--vwvmnvvp~~~~~tL~~----iy~RGli--G-~~hdwce~fstYprtyDl~Ha~ 528 (615)
..|+|+.+|.|.+++.|.+. . |..+-..| .-+.. +-..|+- - +-.|-.+.... ...||+|..+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~----~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~ 156 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR----KICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVT 156 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCH----HHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEEC
Confidence 37999999999999888642 1 22222222 11111 1112321 0 11122222111 1469998865
Q ss_pred ccccccccCCCChhhhhhhhcccccCCcEEEEEc
Q 007165 529 KVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRD 562 (615)
Q Consensus 529 ~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird 562 (615)
.-.. .+.-.+-|.|+|||.+++-.
T Consensus 157 ~g~~----------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVD----------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchH----------HhHHHHHHhcCCCCEEEEEe
Confidence 3222 22234557899999988854
No 456
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=31.90 E-value=1.3e+02 Score=35.17 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=42.0
Q ss_pred CCCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 214 GNIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 214 ~~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
.+..+|| +-||+|.-+..+.+ ....+..+++|++++..+.+..+.+-....+|+|+++.
T Consensus 504 ~k~mKIL-vaCGsGiGTStmva--------------~kIkk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 504 GKPVRIL-AVCGQGQGSSMMMK--------------MKIKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred CcccEEE-EECCCCchHHHHHH--------------HHHHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 3446777 66999965555543 22335667889999988888888776556799999875
No 457
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=31.59 E-value=31 Score=36.30 Aligned_cols=67 Identities=18% Similarity=0.451 Sum_probs=47.1
Q ss_pred cccccCCCCC---CccceecccccccccccCCCChhhhhhhhcccccCCcEEEE--------EcC-------hhH-HHHH
Q 007165 510 DWCESFSTYP---RTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVII--------RDK-------SSI-INYI 570 (615)
Q Consensus 510 dwce~fstYp---rtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~ii--------rd~-------~~~-~~~~ 570 (615)
|-+|-+.. + .+||-|=-. .|-+.-. ++.+.+-.|-++|+|||.+|= .+. ++. .++|
T Consensus 152 DF~e~y~~-~~~~~~~d~VvT~-FFIDTA~---Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi 226 (270)
T PF07942_consen 152 DFLEVYGP-DENKGSFDVVVTC-FFIDTAE---NIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEI 226 (270)
T ss_pred ccEEecCC-cccCCcccEEEEE-EEeechH---HHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHH
Confidence 45555433 3 578865432 4443333 489999999999999997772 243 443 8999
Q ss_pred HHHHhhcCccc
Q 007165 571 RKFITALKWDG 581 (615)
Q Consensus 571 ~~~~~~~~w~~ 581 (615)
+.+++.+.|+.
T Consensus 227 ~~l~~~~GF~~ 237 (270)
T PF07942_consen 227 KELIEKLGFEI 237 (270)
T ss_pred HHHHHHCCCEE
Confidence 99999999997
No 458
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=31.47 E-value=1.3e+02 Score=29.81 Aligned_cols=134 Identities=21% Similarity=0.324 Sum_probs=75.0
Q ss_pred hHhhHHHHHHHHHHhhhccccCCceeeeeeccccch--hHHhhhcCCCcEEEEeccCCC-C-Cchh-HHhhccc--cccc
Q 007165 436 DIGIWQVRVVDYWKQMKTVAQKNTFRNVMDMNSNLG--GFAAALKDKDVWVMNVAPVRM-S-ARLK-IIYDRGL--IGTV 508 (615)
Q Consensus 436 d~~~W~~~v~~y~~~l~~~~~~~~~Rnvmdm~a~~g--gfaaal~~~~vwvmnvvp~~~-~-~tL~-~iy~RGl--iG~~ 508 (615)
..+.|.+++-.=...+. .+..... +++|+.+|-| |..-|+.....=|. .|=..+ . +=|. ++-+=|| +=++
T Consensus 27 ~~~~~~~Hi~DSL~~~~-~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~-LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 27 PEEIWERHILDSLALLP-FLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVT-LVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp HHHHHHHHHHHHHGGGG-CS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEE-EEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred HHHHHHHHHHHHHHhhh-hhccCCc-eEEecCCCCCChhHHHHHhCCCCcEE-EEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 35788877764333333 2333333 6999998755 55555554332111 222211 1 3232 3444566 4578
Q ss_pred ccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhHHHHH---HHHHhhcCccc
Q 007165 509 HDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSIINYI---RKFITALKWDG 581 (615)
Q Consensus 509 hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~~~~~---~~~~~~~~w~~ 581 (615)
|.-.|. ..++..||.+=|--+-+ +..++--+-+.|+|||.++.--.....+++ ++..+.+.++.
T Consensus 104 ~~R~E~-~~~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~ 170 (184)
T PF02527_consen 104 NGRAEE-PEYRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKV 170 (184)
T ss_dssp ES-HHH-TTTTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEE
T ss_pred Eeeecc-cccCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEE
Confidence 888888 77899999987655433 666666677899999999987555554444 44444444443
No 459
>PRK07402 precorrin-6B methylase; Provisional
Probab=31.33 E-value=53 Score=32.02 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=57.2
Q ss_pred eeeeeccccchhHHhhhcC--CCcEEEEeccCCC-CCchhHHhh----ccc--ccccc-cccccCCCCCCccceeccccc
Q 007165 461 RNVMDMNSNLGGFAAALKD--KDVWVMNVAPVRM-SARLKIIYD----RGL--IGTVH-DWCESFSTYPRTYDLLHAWKV 530 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~--~~vwvmnvvp~~~-~~tL~~iy~----RGl--iG~~h-dwce~fstYprtyDl~Ha~~~ 530 (615)
..|+|..+|.|.++.++.. ...- |+=++- +..+...-+ .|+ |=+.+ |--+.+.--+-.+|.++.++
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~---V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGR---VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCE---EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 4699999999999877642 1222 333332 222222211 232 11111 11111111111235544322
Q ss_pred ccccccCCCChhhhhhhhcccccCCcEEEEEcC-hhHHHHHHHHHhhcCc
Q 007165 531 FSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDK-SSIINYIRKFITALKW 579 (615)
Q Consensus 531 fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~-~~~~~~~~~~~~~~~w 579 (615)
...+.+++-++-|+|+|||.+++-.. .+.+.++.+.++.+++
T Consensus 118 -------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 -------GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred -------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 13578999999999999999888743 3345556666665533
No 460
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.06 E-value=79 Score=27.61 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=31.4
Q ss_pred EEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
|| +-||+|.-+..++. ....+...++|+++.+...+...++-....+|+|++..
T Consensus 5 IL-vvCgsG~~TS~m~~--------------~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 5 II-VACGGAVATSTMAA--------------EEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred EE-EECCCchhHHHHHH--------------HHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECC
Confidence 44 45888865555532 12234556677777777666554442225678887653
No 461
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.94 E-value=1.4e+02 Score=31.44 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=50.3
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCC-----CC-CCCCceEEEec
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRL-----PY-PSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~L-----pf-pd~sFDlV~~s 286 (615)
+..+||=.|+| .|..+..+++. .+. .+...+.++...+.+++.|....+...+ ..+ .+ ....+|+|+-+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-~~~~~~i~~~~~~~~~d~vld~ 242 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARL--RGAGRIIAVGSRPNRVELAKEYGATDIVDYKN-GDVVEQILKLTGGKGVDAVIIA 242 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCceEecCCC-CCHHHHHHHHhCCCCCcEEEEC
Confidence 34678888865 33444445543 122 1333344455556777766532221111 110 11 23468988843
Q ss_pred ccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.. ....+.++.+.|+++|.++...
T Consensus 243 ~g-------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 243 GG-------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CC-------CHHHHHHHHHHhhcCCEEEEec
Confidence 21 1247889999999999998654
No 462
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=30.84 E-value=25 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=35.3
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhH
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI 566 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~ 566 (615)
+..||+|-+-++|..... =.-..|+-.+-+.|+|||++++--...+
T Consensus 221 ~~~fD~I~cRNvliyF~~--~~~~~vl~~l~~~L~pgG~L~lG~sEsl 266 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDK--TTQERILRRFVPLLKPDGLLFAGHSENF 266 (287)
T ss_pred CCCcceeeHhhHHhcCCH--HHHHHHHHHHHHHhCCCcEEEEeCcccc
Confidence 478999999998763321 2356789999999999999988765443
No 463
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=30.47 E-value=1.6e+02 Score=30.71 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=48.1
Q ss_pred CCeEEEECCCC-chHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCC---C-CC-CCCCceEEEeccc
Q 007165 216 IRNVLDVGCGV-ASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKR---L-PY-PSRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGt-G~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~---L-pf-pd~sFDlV~~s~~ 288 (615)
..+||-.|+|. |..+..++.. .++. +.....+....+.+.+.+... +....... + .. +...||+|+...
T Consensus 160 ~~~vlI~g~g~~g~~~~~lA~~--~G~~~v~~~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~vld~~- 235 (343)
T cd08236 160 GDTVVVIGAGTIGLLAIQWLKI--LGAKRVIAVDIDDEKLAVARELGADD-TINPKEEDVEKVRELTEGRGADLVIEAA- 235 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHcCCCE-EecCccccHHHHHHHhCCCCCCEEEECC-
Confidence 45788888654 4455555543 1222 222233344445555555421 11111000 0 11 224589888432
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.....+..+.+.|+++|.++...
T Consensus 236 ------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 236 ------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred ------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 12346788899999999998765
No 464
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=29.96 E-value=27 Score=34.83 Aligned_cols=56 Identities=18% Similarity=0.351 Sum_probs=31.6
Q ss_pred cccccccCCCCCCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcChhH
Q 007165 508 VHDWCESFSTYPRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKSSI 566 (615)
Q Consensus 508 ~hdwce~fstYprtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~~~ 566 (615)
.||-++ ....+.-||+|=+-+++.-... =.-..|+=-+-+.|+|||++++-....+
T Consensus 124 ~~NL~~-~~~~~~~fD~I~CRNVlIYF~~--~~~~~vl~~l~~~L~pgG~L~lG~sE~l 179 (196)
T PF01739_consen 124 RHNLLD-PDPPFGRFDLIFCRNVLIYFDP--ETQQRVLRRLHRSLKPGGYLFLGHSESL 179 (196)
T ss_dssp E--TT--S------EEEEEE-SSGGGS-H--HHHHHHHHHHGGGEEEEEEEEE-TT--S
T ss_pred ecccCC-CCcccCCccEEEecCEEEEeCH--HHHHHHHHHHHHHcCCCCEEEEecCccC
Confidence 466666 4556789999999999873321 1235677778899999999999766443
No 465
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=29.73 E-value=1.9e+02 Score=29.91 Aligned_cols=87 Identities=18% Similarity=0.188 Sum_probs=48.4
Q ss_pred CCCeEEEECCCCchHHHHH---hcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 215 NIRNVLDVGCGVASFGAYL---LSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L---~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+..+||=.|+ |.++..+ +.. .+..+.....+....+++++.|....+. .... ...+.+|+|+-...
T Consensus 155 ~g~~vlV~g~--g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~g--- 223 (319)
T cd08242 155 PGDKVAVLGD--GKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEATG--- 223 (319)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECCC---
Confidence 3467888875 4444443 332 2223322334455567777666432221 1111 23456998884321
Q ss_pred cccchHHHHHHHHhccCCCeEEEEE
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis 316 (615)
....+..+.+.|+++|.++..
T Consensus 224 ----~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 ----SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----ChHHHHHHHHHhhcCCEEEEE
Confidence 134677888999999999974
No 466
>PLN02827 Alcohol dehydrogenase-like
Probab=29.68 E-value=1.3e+02 Score=32.56 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=49.1
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecC-CCC-----CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KRL-----PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~-~~L-----pfpd~sFDlV~~s 286 (615)
++.+||-.|+| .|.++..++.. .+. .+...+.++...+++++.|....+...+. ... ....+.+|+|+-.
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~--~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 270 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKL--RGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFEC 270 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEEC
Confidence 35679988864 23343444432 122 12223444556678877776432211110 000 0112368988743
Q ss_pred ccccccccchHHHHHHHHhccCCC-eEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~Lvis~ 317 (615)
-. ....+.+..++|++| |.+++..
T Consensus 271 ~G-------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 271 VG-------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CC-------ChHHHHHHHHhhccCCCEEEEEC
Confidence 21 123577888899999 9998754
No 467
>PRK00536 speE spermidine synthase; Provisional
Probab=28.77 E-value=53 Score=34.34 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCccceecccccccccccCCCChhhhhhhhcccccCCcEEEEEcCh
Q 007165 519 PRTYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIRDKS 564 (615)
Q Consensus 519 prtyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iird~~ 564 (615)
..+||+|=.|.+|+. +-.-.+-|+|+|+|.++.+-..
T Consensus 137 ~~~fDVIIvDs~~~~---------~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 137 IKKYDLIICLQEPDI---------HKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CCcCCEEEEcCCCCh---------HHHHHHHHhcCCCcEEEECCCC
Confidence 478999999998882 1123468999999999998543
No 468
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=28.76 E-value=2.1e+02 Score=29.61 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=46.0
Q ss_pred CCeEEEECCCCchHHHH---HhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 216 IRNVLDVGCGVASFGAY---LLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~---L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..+||=.||| .++.. ++.. .+..+.....+....+.+++.|....+ +.... +.+.+|+++...
T Consensus 168 ~~~vlV~g~g--~vg~~~~~la~~--~g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~--~~~~vD~vi~~~----- 233 (329)
T cd08298 168 GQRLGLYGFG--ASAHLALQIARY--QGAEVFAFTRSGEHQELARELGADWAG---DSDDL--PPEPLDAAIIFA----- 233 (329)
T ss_pred CCEEEEECCc--HHHHHHHHHHHH--CCCeEEEEcCChHHHHHHHHhCCcEEe---ccCcc--CCCcccEEEEcC-----
Confidence 3567777754 34333 3332 123332223334455666665642211 11111 335688876321
Q ss_pred ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 293 LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 293 ~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ....+.++.+.|++||.++...
T Consensus 234 -~-~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 234 -P-VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -C-cHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1247899999999999999754
No 469
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.66 E-value=99 Score=34.01 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=59.0
Q ss_pred CCeEEEECCCCchHHHHHhc-CCCccccCChhchhHHHHHHHHHc-----CCCcEEEEecCCCCCCC-CCCceEEEeccc
Q 007165 216 IRNVLDVGCGVASFGAYLLS-HDIIAMSLAPNDVHENQIQFALER-----GIPSTLGVLGTKRLPYP-SRSFELAHCSRC 288 (615)
Q Consensus 216 ~~~VLDIGCGtG~~a~~L~~-~~V~gvdis~~Dls~a~i~~A~er-----g~~~~~~v~d~~~Lpfp-d~sFDlV~~s~~ 288 (615)
..+|||-=+|+|.=+...+. ... ..+.-.|+++...+.+++. +........|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~--~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~ID---- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV--VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVID---- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc--cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEe----
Confidence 47899999999976666553 211 1333445555555555433 33344444454333221 26788774
Q ss_pred ccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 289 RIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 289 ~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
+.=...+..++..+.+.+|.||++.++..+
T Consensus 127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred -cCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 222334566899999999999999997643
No 470
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=28.50 E-value=2e+02 Score=31.41 Aligned_cols=98 Identities=17% Similarity=0.141 Sum_probs=50.6
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCCC------CCCCCceEEEecc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLP------YPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp------fpd~sFDlV~~s~ 287 (615)
..+||=.|+| .|..+..++.. .+.. +...+.+....+.+++.|.. .+.......+. .....+|+|+-.-
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~--~Ga~~vi~~d~~~~r~~~a~~~Ga~-~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQL--LGAAVVIVGDLNPARLAQARSFGCE-TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCceEEEeCCCHHHHHHHHHcCCe-EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3567667764 23343444433 1211 11224455667788887764 22111101110 1224689887432
Q ss_pred ccccc--------ccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDW--------LQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~--------~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
.... ..+....+.+..+++++||.+++..
T Consensus 263 -G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 263 -GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred -CCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 1110 0112357899999999999999865
No 471
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.46 E-value=83 Score=33.38 Aligned_cols=96 Identities=20% Similarity=0.414 Sum_probs=71.0
Q ss_pred ccCCceeeeeeccccchhHHhhhcCC-CcEEEEeccCC-CCCchhH----Hhhcccc----cccccccccCCCCCCccce
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKDK-DVWVMNVAPVR-MSARLKI----IYDRGLI----GTVHDWCESFSTYPRTYDL 524 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~~-~vwvmnvvp~~-~~~tL~~----iy~RGli----G~~hdwce~fstYprtyDl 524 (615)
++.|+ -|+|..+|=||++--+... .| ||+=++ ++|.+.. |-++||- =..+||=+.= -.||=
T Consensus 70 L~~G~--~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDr 140 (283)
T COG2230 70 LKPGM--TLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDR 140 (283)
T ss_pred CCCCC--EEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccce
Confidence 45554 3999999999988766544 56 555554 3355544 6779997 4588886542 23999
Q ss_pred ecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 525 LHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 525 ~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
|=+-|.|-..... +..+.+-=+.++|+|||.+++.
T Consensus 141 IvSvgmfEhvg~~--~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 141 IVSVGMFEHVGKE--NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eeehhhHHHhCcc--cHHHHHHHHHhhcCCCceEEEE
Confidence 9999999977653 5888888899999999998876
No 472
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=28.36 E-value=42 Score=37.45 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=58.5
Q ss_pred eeeeeccccchhHHhhhcCC---CcEEEEeccCCC-CCchhHHhhc----ccccccccccccCCCC-------CCcccee
Q 007165 461 RNVMDMNSNLGGFAAALKDK---DVWVMNVAPVRM-SARLKIIYDR----GLIGTVHDWCESFSTY-------PRTYDLL 525 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~---~vwvmnvvp~~~-~~tL~~iy~R----GliG~~hdwce~fstY-------prtyDl~ 525 (615)
-.|+||.||-||++..|... .. .|+-++- +.-|..+-++ |+-. .+--|.-...+ +.+||.|
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQG---EIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence 35999999999998777532 11 2333342 3444443222 3211 11112222222 2578877
Q ss_pred ccc------ccccccc-----cCCCC-------hhhhhhhhcccccCCcEEEEEc----ChhHHHHHHHHHhh
Q 007165 526 HAW------KVFSEIE-----ERGCS-------FEDLLIEMDRMLRPEGFVIIRD----KSSIINYIRKFITA 576 (615)
Q Consensus 526 Ha~------~~fs~~~-----~~~c~-------~~~i~~EmdRilRp~g~~iird----~~~~~~~~~~~~~~ 576 (615)
=.+ |.+.+-. ...-. ...||-++=|.|||||.+++.. ..+-...|+..+..
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 643 3332100 00001 3578999999999999998763 22334455555544
No 473
>PF14881 Tubulin_3: Tubulin domain
Probab=28.23 E-value=43 Score=32.97 Aligned_cols=32 Identities=31% Similarity=0.672 Sum_probs=24.6
Q ss_pred eeeeeeccccchhHHhhhc--------CCCc-EEEEeccCC
Q 007165 460 FRNVMDMNSNLGGFAAALK--------DKDV-WVMNVAPVR 491 (615)
Q Consensus 460 ~Rnvmdm~a~~ggfaaal~--------~~~v-wvmnvvp~~ 491 (615)
+.=+.|+..++||||+.++ ++++ |+.++-+..
T Consensus 77 fQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~ 117 (180)
T PF14881_consen 77 FQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPS 117 (180)
T ss_pred eEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcc
Confidence 4458899999999999996 4564 988765544
No 474
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=28.18 E-value=50 Score=37.55 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=59.0
Q ss_pred CCCeEEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHc---C-CC--cEEEEecCC----CCCCCCCCceEEE
Q 007165 215 NIRNVLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALER---G-IP--STLGVLGTK----RLPYPSRSFELAH 284 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~er---g-~~--~~~~v~d~~----~Lpfpd~sFDlV~ 284 (615)
++-+|||.=|++|.-+...+..-.-..++...|.+.+.+...++. + .. ++-...|+. ..+-.+..||+|.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 446799999999966655553211123444455555555543322 1 11 122333322 2233457899998
Q ss_pred ecccccccccchHHHHHHHHhccCCCeEEEEEcCC
Q 007165 285 CSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSPE 319 (615)
Q Consensus 285 ~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P~ 319 (615)
. .=...+..+|..+.+.++.||.|.++..+
T Consensus 189 L-----DPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 L-----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred c-----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 3 22234566999999999999999998654
No 475
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=27.96 E-value=39 Score=35.06 Aligned_cols=113 Identities=20% Similarity=0.106 Sum_probs=69.5
Q ss_pred CceeeeeeccccchhHHhhhc-CCCcEEEEeccCCCC-CchhHHhhcccccccccc--------cccCCCCCCccceecc
Q 007165 458 NTFRNVMDMNSNLGGFAAALK-DKDVWVMNVAPVRMS-ARLKIIYDRGLIGTVHDW--------CESFSTYPRTYDLLHA 527 (615)
Q Consensus 458 ~~~Rnvmdm~a~~ggfaaal~-~~~vwvmnvvp~~~~-~tL~~iy~RGliG~~hdw--------ce~fstYprtyDl~Ha 527 (615)
..-|-+.|..||-| +||-.+ ..+ =|||-+|-. -.|.++ .-+-=-+||+= =+.+..=+-+-|||-|
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~~---k~VIatD~s~~mL~~a-~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEHY---KEVIATDVSEAMLKVA-KKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHhh---hhheeecCCHHHHHHh-hcCCCcccccCCccccccccccccCCCcceeeehh
Confidence 44457889999998 544332 332 266666643 455532 22222333333 2333344788899887
Q ss_pred cccccccccCCCChhhhhhhhcccccCCcEEE----EEcChhHHHHHHHHHhhcCcc
Q 007165 528 WKVFSEIEERGCSFEDLLIEMDRMLRPEGFVI----IRDKSSIINYIRKFITALKWD 580 (615)
Q Consensus 528 ~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~i----ird~~~~~~~~~~~~~~~~w~ 580 (615)
.-.|- -|+++..+-|.=|+|||.|-+| .+|+.-+--++-++..++.|+
T Consensus 107 Aqa~H-----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAVH-----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhHH-----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 76654 4889999999999999999222 355555555666666666664
No 476
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=27.09 E-value=2.2e+02 Score=30.31 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=48.9
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCCC--------CCCCCceEEEe
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRLP--------YPSRSFELAHC 285 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp--------fpd~sFDlV~~ 285 (615)
..+||-.|+| .|..+..+++. .+.. +.....+....+++++.|... +.+..... .+.+.+|+++.
T Consensus 183 g~~vLI~g~g~vG~a~i~lak~--~G~~~Vi~~~~~~~~~~~~~~~g~~~---vv~~~~~~~~~~l~~~~~~~~vd~vld 257 (363)
T cd08279 183 GDTVAVIGCGGVGLNAIQGARI--AGASRIIAVDPVPEKLELARRFGATH---TVNASEDDAVEAVRDLTDGRGADYAFE 257 (363)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHHhCCeE---EeCCCCccHHHHHHHHcCCCCCCEEEE
Confidence 4678888764 34444555543 2232 322233444555665555421 11111111 12456898874
Q ss_pred cccccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 286 SRCRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 286 s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... ....+.++.+.|+++|.++...
T Consensus 258 ~~~-------~~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 258 AVG-------RAATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred cCC-------ChHHHHHHHHHhhcCCeEEEEe
Confidence 321 1346788999999999998765
No 477
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=26.86 E-value=1.5e+02 Score=31.03 Aligned_cols=90 Identities=6% Similarity=0.047 Sum_probs=49.5
Q ss_pred CeEEEECC--CCchHHHHHhcCCCccc-cCChhchhHHHHHHHHH-cCCCcEEEEecCCCC-----CCCCCCceEEEecc
Q 007165 217 RNVLDVGC--GVASFGAYLLSHDIIAM-SLAPNDVHENQIQFALE-RGIPSTLGVLGTKRL-----PYPSRSFELAHCSR 287 (615)
Q Consensus 217 ~~VLDIGC--GtG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~e-rg~~~~~~v~d~~~L-----pfpd~sFDlV~~s~ 287 (615)
.+||=.|+ |.|..+..++.. .+. .+.....++...+++++ .|....+...+ ..+ ....+.+|+|+-..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~--~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRL--LGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-DNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHH--cCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHCCCCceEEEECC
Confidence 67888886 466677666654 122 22222334455555554 56533222111 111 01125699998432
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ...+.+..+.|++||.++...
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 123578889999999999754
No 478
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.95 E-value=54 Score=30.32 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=9.6
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 007165 12 SKQLTYVLLGLISVLGLVC 30 (615)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ 30 (615)
||.++.+++++++++.|++
T Consensus 1 RW~l~~iii~~i~l~~~~~ 19 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLF 19 (130)
T ss_pred CeeeHHHHHHHHHHHHHHH
Confidence 4555555555544444443
No 479
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=25.86 E-value=2.4e+02 Score=29.51 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-----CCCCCceEEEecc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----YPSRSFELAHCSR 287 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-----fpd~sFDlV~~s~ 287 (615)
++.+||-.|+|. |..+..++.. .+. .+...+.++.....+.+.|....+. ....... .+.+.+|+|+...
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~vld~~ 239 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKA--AGASLVIASDPNPYRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVVLEMS 239 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEEEECC
Confidence 345677777642 3455555543 122 1212223344445555555432211 1111110 1235689988432
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
- ....+.++.+.|+++|.++....
T Consensus 240 --g-----~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 240 --G-----NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred --C-----CHHHHHHHHHHhccCCEEEEEcc
Confidence 1 13367888899999999987653
No 480
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=25.00 E-value=1.7e+02 Score=25.83 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=35.6
Q ss_pred EEEECCCCchHHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecc
Q 007165 219 VLDVGCGVASFGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSR 287 (615)
Q Consensus 219 VLDIGCGtG~~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~ 287 (615)
||= -||.|.-+..+.+ .+..+..+++|+++...+......+-.....|+++++.
T Consensus 4 IL~-aCG~GvgSS~~ik--------------~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 4 ILA-ACGNGVGSSTMIK--------------MKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred EEE-ECCCCccHHHHHH--------------HHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 443 4888865555443 23336678889887777666666654456789999775
No 481
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=24.50 E-value=1.2e+02 Score=29.27 Aligned_cols=38 Identities=18% Similarity=0.107 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCccccCChhchhHHHHHHHH
Q 007165 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPNDVHENQIQFAL 257 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~--~~~V~gvdis~~Dls~a~i~~A~ 257 (615)
++..|||.=||+|+.+.... +++.+|+|+ ++...+.|.
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~-----~~~y~~~a~ 230 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGRRYIGIEI-----DEEYCEIAK 230 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT-EEEEEES-----SHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCCeEEEEeC-----CHHHHHHhc
Confidence 45789999999998766654 455666654 445555554
No 482
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=24.46 E-value=1.2e+02 Score=32.92 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=45.6
Q ss_pred CCeEEEECCC-CchHHHHHhcC---CCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEecccccc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSH---DIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRID 291 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~---~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~ 291 (615)
+.+||=.|+| .|..+..+++. .|++++.+ ++...+++++.|....+...+...+.-..+.+|+|+-.-
T Consensus 179 g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~----~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~---- 250 (375)
T PLN02178 179 GKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS----SEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTV---- 250 (375)
T ss_pred CCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC----hHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECC----
Confidence 4678888874 23444444443 23333221 122245666666532221111000000012478887322
Q ss_pred cccchHHHHHHHHhccCCCeEEEEEc
Q 007165 292 WLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 292 ~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
. ....+.+..+.|++||.++...
T Consensus 251 --G-~~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 251 --S-AEHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred --C-cHHHHHHHHHhhcCCCEEEEEc
Confidence 1 1236788889999999999765
No 483
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=24.34 E-value=1.1e+02 Score=34.89 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=52.0
Q ss_pred eeeeccccchhHHhhhc----CCCcEEEEeccCCC-CCchhHH---hhc-cccc--cc-ccccccCCCCCCccceecc--
Q 007165 462 NVMDMNSNLGGFAAALK----DKDVWVMNVAPVRM-SARLKII---YDR-GLIG--TV-HDWCESFSTYPRTYDLLHA-- 527 (615)
Q Consensus 462 nvmdm~a~~ggfaaal~----~~~vwvmnvvp~~~-~~tL~~i---y~R-GliG--~~-hdwce~fstYprtyDl~Ha-- 527 (615)
.|+||.|+-||=...|. +.-. ||-.+- ++-+.++ .+| |+-- +. .|=...-..+|.+||.|-.
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g~----lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQGA----IVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCE----EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 69999999999765553 2222 333332 2344443 444 3311 11 2222111244678999883
Q ss_pred ----ccccccccc--CCCCh----------hhhhhhhcccccCCcEEEEE
Q 007165 528 ----WKVFSEIEE--RGCSF----------EDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 528 ----~~~fs~~~~--~~c~~----------~~i~~EmdRilRp~g~~iir 561 (615)
.|+|.+--. .+-+. ..||-..=+.|||||.+|..
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 355552100 00111 45667777899999999987
No 484
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=24.28 E-value=2.1e+02 Score=30.66 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=50.5
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCC-CC-----CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTK-RL-----PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~-~L-----pfpd~sFDlV~~s 286 (615)
.+.+||=+|+| .|.++..+++. .+. .+...+.+....+++++.|....+...+.. .+ ....+.+|+|+-.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 263 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFEC 263 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEEC
Confidence 34678888864 23344444443 222 233334556666777776754322211110 00 0112368988743
Q ss_pred ccccccccchHHHHHHHHhccCCC-eEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~Lvis~ 317 (615)
-. ....+.+..+.|++| |.+++..
T Consensus 264 ~g-------~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 264 IG-------NVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CC-------ChHHHHHHHHhhccCCCeEEEEc
Confidence 21 124778888999997 9998765
No 485
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=24.15 E-value=3.3e+02 Score=28.45 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=47.6
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCC------CCCCCCceEEEecc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~L------pfpd~sFDlV~~s~ 287 (615)
+.+||-.|+| .|..+..++.. .+.. +...+.++...+.+++.|....+.. ....+ ....+.||+|+-..
T Consensus 162 g~~vlI~~~g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~-~~~~~~~~l~~~~~~~~~d~vld~~ 238 (340)
T TIGR00692 162 GKSVLVTGAGPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKKMGATYVVNP-FKEDVVKEVADLTDGEGVDVFLEMS 238 (340)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHHhCCcEEEcc-cccCHHHHHHHhcCCCCCCEEEECC
Confidence 4566666654 33444444443 1222 2222333444455566564321111 11110 01335689988432
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
. ....+.++.+.|+++|.++....
T Consensus 239 --g-----~~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 239 --G-----APKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred --C-----CHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 13468889999999999987653
No 486
>PLN02476 O-methyltransferase
Probab=24.09 E-value=1.4e+02 Score=31.49 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=52.3
Q ss_pred ccCCceeeeeeccccchhHHhhhcC----C-CcEEEEeccCCCCCchhHHhhcccc-------cccccccccC--CCCCC
Q 007165 455 AQKNTFRNVMDMNSNLGGFAAALKD----K-DVWVMNVAPVRMSARLKIIYDRGLI-------GTVHDWCESF--STYPR 520 (615)
Q Consensus 455 ~~~~~~Rnvmdm~a~~ggfaaal~~----~-~vwvmnvvp~~~~~tL~~iy~RGli-------G~~hdwce~f--stYpr 520 (615)
+....-++|+++.++.|..+.+|.. . .+.-+=.-|....-.-..+-.-|+- |-.-+.-+.+ ...+.
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCC
Confidence 4555678999999999998877653 1 2332221111111111112222331 2111211111 11245
Q ss_pred ccceecccccccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 521 TYDLLHAWKVFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 521 tyDl~Ha~~~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+||++=.++= +. +..+++-+.=+.|||||.+|+.
T Consensus 194 ~FD~VFIDa~-----K~--~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 194 SYDFAFVDAD-----KR--MYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCEEEECCC-----HH--HHHHHHHHHHHhcCCCcEEEEe
Confidence 7998766652 11 3455555556799999999986
No 487
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=23.81 E-value=3.2e+02 Score=28.83 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=47.6
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecCCCCC-----------CCCCCce
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGTKRLP-----------YPSRSFE 281 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lp-----------fpd~sFD 281 (615)
++.+||=.|+| .|..+..++.. .+. .+...+.++...+++++.|....+ +..... ...+.+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~--~G~~~v~~~~~~~~~~~~~~~~g~~~vi---~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKL--AGARRVIVIDGSPERLELAREFGADATI---DIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHcCCCeEE---cCcccccHHHHHHHHHHhCCCCCc
Confidence 34678878753 12333334433 222 222223344455666665653222 111111 1224689
Q ss_pred EEEecccccccccchHHHHHHHHhccCCCeEEEEEcC
Q 007165 282 LAHCSRCRIDWLQRDGILLLELDRLLRPGGYFVYSSP 318 (615)
Q Consensus 282 lV~~s~~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~P 318 (615)
+|+-... ....+.+..+.|+++|.++....
T Consensus 252 ~vid~~g-------~~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 252 VVIEASG-------HPAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred EEEECCC-------ChHHHHHHHHHhccCCEEEEEcC
Confidence 8884321 12367788899999999997653
No 488
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.67 E-value=2.2e+02 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.7
Q ss_pred HHHHHHHhccCCCeEEEEE
Q 007165 298 ILLLELDRLLRPGGYFVYS 316 (615)
Q Consensus 298 ~~L~ei~RvLkPGG~Lvis 316 (615)
.-++++.+.++.||.++++
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4677888888899999986
No 489
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=23.56 E-value=56 Score=34.23 Aligned_cols=91 Identities=20% Similarity=0.381 Sum_probs=56.3
Q ss_pred ceeeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhhccccc-ccccccccCCCCCCccceeccccccccccc
Q 007165 459 TFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYDRGLIG-TVHDWCESFSTYPRTYDLLHAWKVFSEIEE 536 (615)
Q Consensus 459 ~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~RGliG-~~hdwce~fstYprtyDl~Ha~~~fs~~~~ 536 (615)
+..+++|..||=|+--+-|... .=+|.-+... -----.-.||.-= -..||=+. +..||+|-+-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvLD---- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVLD---- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhhh----
Confidence 4567888888888877766421 0012222221 1111123566521 12235432 56799999999887
Q ss_pred CCCC-hhhhhhhhcccccCCcEEEEE
Q 007165 537 RGCS-FEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 537 ~~c~-~~~i~~EmdRilRp~g~~iir 561 (615)
||. ...+|-+|-+-|+|+|.+|+-
T Consensus 163 -Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 -RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 454 567888999999999999986
No 490
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=23.53 E-value=52 Score=36.45 Aligned_cols=120 Identities=20% Similarity=0.187 Sum_probs=64.9
Q ss_pred eeeeeccccchhHHhhhcCCCcEEEEeccCCCC-CchhHHhh----cccc----cccc-cccccCCCC---CCccceecc
Q 007165 461 RNVMDMNSNLGGFAAALKDKDVWVMNVAPVRMS-ARLKIIYD----RGLI----GTVH-DWCESFSTY---PRTYDLLHA 527 (615)
Q Consensus 461 Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~~~-~tL~~iy~----RGli----G~~h-dwce~fstY---prtyDl~Ha 527 (615)
++|+|+.+|-|||+.+......- .|+-++.. ..+...-+ -|+= =+.+ |.-+....+ .++||+|=.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~--~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCS--QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 57999999999997543322211 34444432 34433211 1321 0111 222222222 358999987
Q ss_pred ccccc-c----cccCCCChhhhhhhhcccccCCcEEEEE------cChhHHHHHHHHHhhcCccce
Q 007165 528 WKVFS-E----IEERGCSFEDLLIEMDRMLRPEGFVIIR------DKSSIINYIRKFITALKWDGW 582 (615)
Q Consensus 528 ~~~fs-~----~~~~~c~~~~i~~EmdRilRp~g~~iir------d~~~~~~~~~~~~~~~~w~~~ 582 (615)
|-=+- . +..-...+.+++.-.=++|+|||.++.- +..++.+-|.+-+..-+.+.+
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~ 365 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQ 365 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEE
Confidence 74331 1 1111134666666777999999999983 224566666666666655554
No 491
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.33 E-value=27 Score=36.09 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=76.4
Q ss_pred cccCCceeeeeeccccchhHHhhhcCCCcEEEEeccCC-CCCchhHHhhcccccc-cccccccCC--CCCCccceecccc
Q 007165 454 VAQKNTFRNVMDMNSNLGGFAAALKDKDVWVMNVAPVR-MSARLKIIYDRGLIGT-VHDWCESFS--TYPRTYDLLHAWK 529 (615)
Q Consensus 454 ~~~~~~~Rnvmdm~a~~ggfaaal~~~~vwvmnvvp~~-~~~tL~~iy~RGliG~-~hdwce~fs--tYprtyDl~Ha~~ 529 (615)
..+.+.+|-++|..+|-|=++-+|.+.-- -.-=+| +.|-|-+.+++|+--+ ||-=-..|. +=++-+|||-|..
T Consensus 120 ~~~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 120 KADLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred hccCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 35567799999999999988888864311 011123 3489999999997432 333334476 6789999999999
Q ss_pred cccccccCCCChhhhhhhhcccccCCcEEEEE
Q 007165 530 VFSEIEERGCSFEDLLIEMDRMLRPEGFVIIR 561 (615)
Q Consensus 530 ~fs~~~~~~c~~~~i~~EmdRilRp~g~~iir 561 (615)
+|+-+. +++.|+.=.++.|.|||.+++.
T Consensus 197 Vl~YlG----~Le~~~~~aa~~L~~gGlfaFS 224 (287)
T COG4976 197 VLPYLG----ALEGLFAGAAGLLAPGGLFAFS 224 (287)
T ss_pred HHHhhc----chhhHHHHHHHhcCCCceEEEE
Confidence 999433 5999999999999999999997
No 492
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=23.19 E-value=2.3e+02 Score=30.28 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=48.7
Q ss_pred CCCeEEEECCC-CchHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecC-CC----C-CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCG-VASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KR----L-PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~-~~----L-pfpd~sFDlV~~s 286 (615)
++.+||=+|+| .|..+..++.. .+. .+...+.+....+++++.|....+...+. .. + ....+.+|+|+-.
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~ 261 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence 34678888864 22333444433 122 22233445556677776665322211110 00 0 0112468988732
Q ss_pred ccccccccchHHHHHHHHhccCCC-eEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~Lvis~ 317 (615)
- - ....+.+..+.|++| |.+++..
T Consensus 262 ~--g-----~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 262 T--G-----NADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred C--C-----ChHHHHHHHHhcccCCCEEEEEc
Confidence 2 1 124678888999886 9998765
No 493
>PRK13699 putative methylase; Provisional
Probab=23.17 E-value=2.1e+02 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.110 Sum_probs=24.3
Q ss_pred CCCeEEEECCCCchHHHHHh--cCCCccccCChhc
Q 007165 215 NIRNVLDVGCGVASFGAYLL--SHDIIAMSLAPND 247 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L~--~~~V~gvdis~~D 247 (615)
++..|||-=||+|+.+.... +++..|+++.+.-
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y 197 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQY 197 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHH
Confidence 45789999999998776654 5577788776543
No 494
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=22.92 E-value=2.2e+02 Score=30.50 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=50.4
Q ss_pred CCCeEEEECCCC-chHHHHHhcCCCccc-cCChhchhHHHHHHHHHcCCCcEEEEecC-CC----C-CCCCCCceEEEec
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLSHDIIAM-SLAPNDVHENQIQFALERGIPSTLGVLGT-KR----L-PYPSRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~~~V~gv-dis~~Dls~a~i~~A~erg~~~~~~v~d~-~~----L-pfpd~sFDlV~~s 286 (615)
...+||=+|+|. |.++..+++. .+. .+...+.+....+++++.|....+...+. .. + ....+.+|+|+-.
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARM--AKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 346788888752 3444555543 122 22233455666677877776433321110 00 0 0111358888733
Q ss_pred ccccccccchHHHHHHHHhccCCC-eEEEEEc
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPG-GYFVYSS 317 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG-G~Lvis~ 317 (615)
- .. ...+.+..+.|++| |.+++..
T Consensus 263 ~------G~-~~~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 263 I------GN-VNVMRAALECCHKGWGESIIIG 287 (368)
T ss_pred C------CC-HHHHHHHHHHhhcCCCeEEEEe
Confidence 2 11 34677888899986 9988765
No 495
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=22.66 E-value=71 Score=33.96 Aligned_cols=43 Identities=16% Similarity=0.428 Sum_probs=36.2
Q ss_pred CChhhhhh-hhcccccCCcEEEEEc-----------ChhHHHHHHHHHhhcCccc
Q 007165 539 CSFEDLLI-EMDRMLRPEGFVIIRD-----------KSSIINYIRKFITALKWDG 581 (615)
Q Consensus 539 c~~~~i~~-EmdRilRp~g~~iird-----------~~~~~~~~~~~~~~~~w~~ 581 (615)
|+|...|- |+.++++|+|.+|+-- ...+.++|+++|++-.|+.
T Consensus 230 ~s~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 230 CSMVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred hhhHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 67777777 8999999999999863 3567899999999999985
No 496
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=22.61 E-value=1.8e+02 Score=32.64 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=48.9
Q ss_pred CCCeEEEECCC-Cch-HHHHHhcCCCccccCChhchhHHHHHHHHHcCCCcEEEEecCCCCCCCCCCceEEEeccccccc
Q 007165 215 NIRNVLDVGCG-VAS-FGAYLLSHDIIAMSLAPNDVHENQIQFALERGIPSTLGVLGTKRLPYPSRSFELAHCSRCRIDW 292 (615)
Q Consensus 215 ~~~~VLDIGCG-tG~-~a~~L~~~~V~gvdis~~Dls~a~i~~A~erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~l~~ 292 (615)
..++||=||.| .|. .+.+|.++.+..+-+.......++ ++|.+.+. ... ...+++-.-..+|+|+++-.+-++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-~La~~~~~--~~~--~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-ELAKKLGA--EAV--ALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHHhCC--eee--cHHHHHHhhhhCCEEEEecCCCcc
Confidence 45789999999 774 556677777777777777776665 77777662 222 223332222579999988765655
Q ss_pred cc
Q 007165 293 LQ 294 (615)
Q Consensus 293 ~~ 294 (615)
+-
T Consensus 252 ii 253 (414)
T COG0373 252 II 253 (414)
T ss_pred cc
Confidence 43
No 497
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=22.21 E-value=3.6e+02 Score=28.86 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCCeEEEECCCCchHHH--HHhc--CCCccccCChhchhHHHHHHHHHcCCC-cEEEEecCCCCCCC---CCCceEEEec
Q 007165 215 NIRNVLDVGCGVASFGA--YLLS--HDIIAMSLAPNDVHENQIQFALERGIP-STLGVLGTKRLPYP---SRSFELAHCS 286 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~--~L~~--~~V~gvdis~~Dls~a~i~~A~erg~~-~~~~v~d~~~Lpfp---d~sFDlV~~s 286 (615)
.++.|+-+| -.-.++. .|.+ .+|..+|+...-+.- ..++|.+.|.+ +...+.|.. -|+| .+.||+.+.-
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~f-i~k~aee~g~~~ie~~~~Dlr-~plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKF-IEKVAEELGYNNIEAFVFDLR-NPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHH-HHHHHHHhCccchhheeehhc-ccChHHHHhhCCeeecC
Confidence 356799998 3333333 3332 256666665443321 12456677776 677777753 3444 3789988743
Q ss_pred ccccccccchHHHHHHHHhccCCC---eEEEEEcCCCCCCChhHHHHHHHHHH-HHhhcceEE
Q 007165 287 RCRIDWLQRDGILLLELDRLLRPG---GYFVYSSPEAYAHDPENRRIWNAMYD-LLKSMCWKI 345 (615)
Q Consensus 287 ~~~l~~~~d~~~~L~ei~RvLkPG---G~Lvis~P~~~~~~~e~~~~w~~l~~-La~~l~W~l 345 (615)
- -+-++....++.+=...||-- |+|.++.. +.....|..+++ +...|.+-.
T Consensus 229 P--peTi~alk~FlgRGI~tLkg~~~aGyfgiT~r------essidkW~eiQr~lIn~~gvVI 283 (354)
T COG1568 229 P--PETIKALKLFLGRGIATLKGEGCAGYFGITRR------ESSIDKWREIQRILINEMGVVI 283 (354)
T ss_pred c--hhhHHHHHHHHhccHHHhcCCCccceEeeeec------cccHHHHHHHHHHHHHhcCeee
Confidence 2 222333344666556666655 89998753 334567999998 677776543
No 498
>PRK11524 putative methyltransferase; Provisional
Probab=22.21 E-value=2e+02 Score=29.98 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCCeEEEECCCCchHHHHH--hcCCCccccCChhchhHHHHHHHHHc
Q 007165 215 NIRNVLDVGCGVASFGAYL--LSHDIIAMSLAPNDVHENQIQFALER 259 (615)
Q Consensus 215 ~~~~VLDIGCGtG~~a~~L--~~~~V~gvdis~~Dls~a~i~~A~er 259 (615)
++..|||-=||+|+.+... ++++.+|+++.+ ...+.|++|
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~-----~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINS-----EYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCH-----HHHHHHHHH
Confidence 4678999999999766544 466778886654 444555555
No 499
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=22.06 E-value=1.3e+02 Score=32.65 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=57.4
Q ss_pred CCCeEEEECCCC-chHHHHHhc---CCCccccCChhchhHHHHHHHH-HcCCCcEEEEecCCCCCCCCCCceEEEecccc
Q 007165 215 NIRNVLDVGCGV-ASFGAYLLS---HDIIAMSLAPNDVHENQIQFAL-ERGIPSTLGVLGTKRLPYPSRSFELAHCSRCR 289 (615)
Q Consensus 215 ~~~~VLDIGCGt-G~~a~~L~~---~~V~gvdis~~Dls~a~i~~A~-erg~~~~~~v~d~~~Lpfpd~sFDlV~~s~~~ 289 (615)
...+|.=||-|. |..++.++- +.|+.+|+ +...++... ..+.++.........+.-.-...|+|+..- .
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~-----n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV-L 240 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDL-----NIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV-L 240 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEec-----CHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE-E
Confidence 345688888885 566666653 35555544 433333222 224444444433333322225689999654 4
Q ss_pred cccccchHHHHHHHHhccCCCeEEE
Q 007165 290 IDWLQRDGILLLELDRLLRPGGYFV 314 (615)
Q Consensus 290 l~~~~d~~~~L~ei~RvLkPGG~Lv 314 (615)
+.--..|.-..+++...+|||+.++
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEE
Confidence 6666677778999999999999988
No 500
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=21.98 E-value=2.1e+02 Score=30.51 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=47.3
Q ss_pred CCeEEEECCC-CchHHHHHhcCCCcccc-CChhchhHHHHHHHHHcCCCcEEEEecCCCC------CCCCCCceEEEecc
Q 007165 216 IRNVLDVGCG-VASFGAYLLSHDIIAMS-LAPNDVHENQIQFALERGIPSTLGVLGTKRL------PYPSRSFELAHCSR 287 (615)
Q Consensus 216 ~~~VLDIGCG-tG~~a~~L~~~~V~gvd-is~~Dls~a~i~~A~erg~~~~~~v~d~~~L------pfpd~sFDlV~~s~ 287 (615)
..+||=.|+| .|..+..+++. .+.. +.....+....+++++.+....+. .....+ ..++..||+|+...
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~--~G~~~vi~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~~d~vld~v 264 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKA--FGASPIIAVDVRDEKLAKAKELGATHTVN-AAKEDAVAAIREITGGRGVDVVVEAL 264 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHHhCCceEec-CCcccHHHHHHHHhCCCCCCEEEEeC
Confidence 4567766653 33444444443 2222 222233445556666655422111 111110 01345699988432
Q ss_pred cccccccchHHHHHHHHhccCCCeEEEEEc
Q 007165 288 CRIDWLQRDGILLLELDRLLRPGGYFVYSS 317 (615)
Q Consensus 288 ~~l~~~~d~~~~L~ei~RvLkPGG~Lvis~ 317 (615)
... ..+.++.+.|+++|.++...
T Consensus 265 ------g~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 265 ------GKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred ------CCH-HHHHHHHHHHhcCCEEEEEc
Confidence 111 26788899999999999765
Done!