BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007166
(615 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 153/590 (25%), Positives = 277/590 (46%), Gaps = 71/590 (12%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
ML LPF+T GF+ KIY TE +IG+ +M EL+ + +G W
Sbjct: 111 MLALPFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERV-----PKRRNGNMWKNDNV 165
Query: 103 LELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 162
+ LP+ L ++A + L VK CISK+Q + + E+ GIL + A SSG
Sbjct: 166 IRCLPAPLNELANVKSWRVLYSK----HDVKACISKIQAVSYSEKLDLCGILQLSAHSSG 221
Query: 163 LDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 222
+G+ NW++ I+Y+S S+ + H + + ++ SD+++ + ++
Sbjct: 222 FCLGSSNWMLESEYEKISYLSPSSSFTTHPLPLNQTVLKNSDVLIITGVTEA-------- 273
Query: 223 SSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQL 282
+ N D + E C+ +++AGG+VL+P GV L
Sbjct: 274 ---------------PIDNPDAMLGEF------CTHLASTLRAGGNVLVPCYPSGVLYDL 312
Query: 283 LEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLI 341
E + +++ + L +PIY IS VA+ LAY+N EWLC+ +Q K++ +P F H +L+
Sbjct: 313 FECLYTYLDNAKLGMVPIYFISPVADSSLAYSNIYGEWLCQSKQTKVYLPEPPFPHAELL 372
Query: 342 KEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWS-GDHNSLLVLENEV 400
KE ++ VF +H+ +++ PC+VF+ H SLR G +H + W +N+++ E +
Sbjct: 373 KEARLKVFSNLHN-GFSSSFKTPCVVFTGHPSLRYGDAVHFMEIWGKSGNNTVIFTEPDF 431
Query: 401 DAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW---------RTH 451
A+ P++P++MK C + LLK LQP+ ++ PE + RT
Sbjct: 432 PYLEALAPYQPLAMKTCYCPIDPRLNFAQANKLLKELQPRHLVMPESYSRPPVIHPHRTD 491
Query: 452 VSFSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRL 511
++ D S++ ++ + +P + ++ IA +++S + ++ + + L G L
Sbjct: 492 LTIED-PGCSLTTFNHLDVAALPISRSFEKVVIANELSSCLHPQHVR-PGVAVATLTGTL 549
Query: 512 FVNHGKHQLLP---------ENEPGGSSQTRPFLH---WGSPDPENLLAELSKMGINGSV 559
K+ L P +E G SS + L WG+ ++ + L K GI
Sbjct: 550 VTKDNKYTLQPLEFLVEPKAGSEGGDSSTNKGQLSRHLWGTVQLDDFVRSLKKRGITD-- 607
Query: 560 ERCMTDAESEDG-FTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAM 608
+ ES G T+ + + + ++ R + +I+ ++ L RI A+
Sbjct: 608 ----VNVESSGGEHTIHLPNDDAMILLDRGSTHIITHGNEELRIRIRDAL 653
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 196 bits (499), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 154/593 (25%), Positives = 274/593 (46%), Gaps = 68/593 (11%)
Query: 8 WTFRHSQSFLHCQMIFIKLYARKILILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAAR 67
W+ + +FL + I L ++++ M+ LP++T GF+ +Y TE +
Sbjct: 55 WSLKDGNAFLD-KTELIDLSTVDVILISNYHC---MMALPYITEHTGFTGTVYATEPTVQ 110
Query: 68 IGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGG--G 125
IG+L+MEEL+ N R + S W + LLPS L+ D E+
Sbjct: 111 IGRLLMEELV--NFIERV---PKAQSASLWKNKDIQRLLPSPLK------DAVEVSTWRR 159
Query: 126 CPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGS 185
C + V +SK+Q + F ++ G + + SSG +G+ NWII ++Y+SGS
Sbjct: 160 CYTMQEVNSALSKIQLVGFSQKIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGS 219
Query: 186 NFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDES 245
+ + H D +++ SD+++ + L+ + + +N D
Sbjct: 220 SLLTTHPQPMDQASLKNSDVLVLTGLTQIPT-----------------------ANPDGM 256
Query: 246 VEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISS 304
V E CS +V+ GG+VL+P GV LLE + +++ + L +P+Y IS
Sbjct: 257 VGEF------CSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFISP 310
Query: 305 VAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEP 364
VA L ++ EWLC +Q K++ +P F H +LI+ K+ +P++H ++++P
Sbjct: 311 VANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHG-DFSNDFRQP 369
Query: 365 CIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLENEVDAELAVLPFKPISMKVLQCSFLS 423
C+VF+ H SLR G +H + W N+++ E + A+ P++P++MK + C +
Sbjct: 370 CVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEPDFSYLEALAPYQPLAMKCIYCPIDT 429
Query: 424 GKKLQKVQPLLKILQPKLVLFPEEW------RTHVS--FSDVTSFSVSHYSENETIHIPS 475
+V LLK +QP V+ PE++ ++H D ++S Y E + +P
Sbjct: 430 RLNFIQVSKLLKEVQPLHVVCPEQYTQPPPAQSHRMDLMIDCQPPAMS-YRRAEVLALPF 488
Query: 476 LKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEPG--GSSQTR 533
+ ++EI ++A +K +++ + L KH L P P S + R
Sbjct: 489 KRRYEKIEIMPELADSLVPMEIK-PGISLATVSAVLHTKDNKHLLQPPPRPAQPTSGKKR 547
Query: 534 PFLHWGSPDPENLLAELSKMGINGS--VERCMTDAESEDGFTVKVQDPEKSMI 584
+ PD ++ K ++GS VE+ + E +KV+D K I
Sbjct: 548 KRVSDDVPD-----CKVLKPLLSGSIPVEQFVQTLEKHGFSDIKVEDTAKGHI 595
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 148/558 (26%), Positives = 261/558 (46%), Gaps = 64/558 (11%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
M+ LP++T GF+ +Y TE +IG+L+MEEL+ N R + S W +
Sbjct: 107 MMALPYITEHTGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSASLWKNKDI 161
Query: 103 LELLPSALRKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160
LLPS L+ D E+ C + V +SK+Q + + ++ G + + S
Sbjct: 162 QRLLPSPLK------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLS 215
Query: 161 SGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI 220
SG +G+ NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 216 SGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGLTQIPT---- 271
Query: 221 DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFL 280
+N D V E CS +V+ GG+VL+P GV
Sbjct: 272 -------------------ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIY 306
Query: 281 QLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVK 339
LLE + +++ + L +P+Y IS VA L ++ EWLC +Q K++ +P F H +
Sbjct: 307 DLLECLYQYIDSAGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAE 366
Query: 340 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLEN 398
LI+ K+ +P++H ++++PC+VF+ H SLR G +H + W N+++ E
Sbjct: 367 LIQTNKLKHYPSIHG-DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEP 425
Query: 399 EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW------RTHV 452
+ A+ P++P++MK + C + +V LLK +QP V+ PE++ ++H
Sbjct: 426 DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQPPPAQSHR 485
Query: 453 S--FSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGR 510
D ++S Y E + +P + ++EI ++A +K +++ +
Sbjct: 486 MDLMIDCQPPAMS-YRRAEVLALPFKRRYEKIEIMPELADSLVPMEIK-PGISLATVSAV 543
Query: 511 LFVNHGKHQLLPENEPG--GSSQTRPFLHWGSPDPENLLAELSKMGINGS--VERCMTDA 566
L KH L P P S + R + PD ++ K ++GS VE+ +
Sbjct: 544 LHTKDNKHLLQPPPRPAQPTSGKKRKRVSDDVPD-----CKVLKPLLSGSIPVEQFVQTL 598
Query: 567 ESEDGFTVKVQDPEKSMI 584
E +KV+D K I
Sbjct: 599 EKHGFSDIKVEDTAKGHI 616
>sp|Q5ZKK2|INT9_CHICK Integrator complex subunit 9 OS=Gallus gallus GN=INTS9 PE=2 SV=1
Length = 658
Score = 189 bits (481), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 129/487 (26%), Positives = 230/487 (47%), Gaps = 53/487 (10%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
M+ LP++T GF+ +Y TE +IG+L+MEEL+ N R + S W E
Sbjct: 107 MMALPYITEYTGFTGTVYATEPTVQIGRLLMEELV--NSIERV---PKAQSASTWKNKEV 161
Query: 103 LELLPSALRKIALGEDGSELG--GGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160
LLP+ L+ D E+ C + V +SK+Q + + ++ G + + S
Sbjct: 162 QRLLPAPLK------DAVEVSMWRKCYTMPEVNAALSKIQLVGYSQKIELFGAVQVTPLS 215
Query: 161 SGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI 220
SG +G+ NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 216 SGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT---- 271
Query: 221 DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFL 280
+N D V E CS +V+ GG+VL+P GV
Sbjct: 272 -------------------ANPDGMVGEF------CSNLAMTVRNGGNVLVPCYPSGVIY 306
Query: 281 QLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVK 339
LLE + +++ + L +P Y IS VA L ++ EWLC +Q K++ +P F H +
Sbjct: 307 DLLECLYQYIDSAGLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAE 366
Query: 340 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLEN 398
LI+ K+ +P++H ++++PC++F+ H SLR G +H + W N+++ E
Sbjct: 367 LIQTNKLKHYPSIHG-DFSNDFKQPCVIFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEP 425
Query: 399 EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW-RTHVSFSDV 457
+ A+ P++P++MK + C + +V LLK +QP V+ PE++ + S S
Sbjct: 426 DFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQPPPSQSHR 485
Query: 458 TSFSVS------HYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRL 511
T + Y E + +P + ++EI ++A +K +++ + L
Sbjct: 486 TDLMIDCQPPPMSYRRAEVLTLPYKRRYEKIEIMPELADSLVPLEIK-PGISLATVSAML 544
Query: 512 FVNHGKH 518
KH
Sbjct: 545 HTKDNKH 551
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 131/490 (26%), Positives = 230/490 (46%), Gaps = 55/490 (11%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
M+ LP++T GF+ +Y TE +IG+L+MEEL+ N R + S W +
Sbjct: 107 MMALPYITEHTGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSASLWKNKDI 161
Query: 103 LELLPSALRKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160
LLPS L+ D E+ C + V +SK+Q + + ++ G + + S
Sbjct: 162 QRLLPSPLK------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLS 215
Query: 161 SGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI 220
SG +G+ NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 216 SGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT---- 271
Query: 221 DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFL 280
+N D V E CS +V+ GG+VL+P GV
Sbjct: 272 -------------------ANPDSMVGEF------CSNLALTVRNGGNVLVPCYPSGVIY 306
Query: 281 QLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVK 339
LLE + +++ + L IP Y IS VA L ++ EWLC +Q K++ +P F H +
Sbjct: 307 DLLECLYQYIDSAGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTKVYLPEPPFPHAE 366
Query: 340 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLEN 398
LI+ K+ +P++H ++++PC+VF+ H SLR G +H + W N+++ E
Sbjct: 367 LIQTNKLKHYPSIHG-DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWGKSSLNTVIFTEP 425
Query: 399 EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVS----- 453
+ A+ P++P++MK + C + +V LLK +QP V+ PE++
Sbjct: 426 DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQPTPAQSHR 485
Query: 454 ---FSDVTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGR 510
D ++S Y E + +P + ++EI ++A +K +++ +
Sbjct: 486 MDLMVDCQPPAMS-YRRAEVLALPFKRRYEKIEIMPELADSLVPMEIK-PGISLATVSAV 543
Query: 511 LFVNHGKHQL 520
L KH L
Sbjct: 544 LHTKDNKHVL 553
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/459 (26%), Positives = 224/459 (48%), Gaps = 54/459 (11%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
M+ LP++T GF+ +Y TE +IG+L+MEEL+ N R + S W +
Sbjct: 107 MMALPYITERTGFTGTVYATEPTVQIGRLLMEELV--NFIERV---PKAQSATVWKHKDV 161
Query: 103 LELLPSALRKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160
LLP+ L+ D E+ C + V +SK+Q + + ++ G++ + S
Sbjct: 162 QRLLPAPLK------DAVEVFTWKKCYSMQEVNAALSKIQLVGYSQKIELFGVVQVTPLS 215
Query: 161 SGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI 220
SG +G+ NW+I ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 216 SGYALGSSNWVIQSHYEKVSYVSGSSLLTTHPQPMDQTSLKNSDVLILTGLTQIPT---- 271
Query: 221 DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFL 280
+N D V E CS ++++GG+VL+P GV
Sbjct: 272 -------------------ANPDGMVGEF------CSNLAMTIRSGGNVLVPCYPSGVIY 306
Query: 281 QLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVK 339
LLE + +++ + L +P Y IS VA L ++ EWLC +Q K++ +P F H +
Sbjct: 307 DLLECLYQYIDSAGLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQNKVYLPEPPFPHAE 366
Query: 340 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLEN 398
LI+ K+ +P +H ++++PC+VF+ H +LR G +H + W N+++ E
Sbjct: 367 LIQSNKLKHYPNIHG-DFSNDFKQPCVVFTGHPTLRFGDVVHFMELWGKSSLNTVIFTEP 425
Query: 399 EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW------RTHV 452
+ A+ P++P++MK + C + +V LLK +QP V+ PE++ ++H
Sbjct: 426 DFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVTKLLKEVQPLHVVCPEQYTQPPATQSHR 485
Query: 453 S--FSDVTSFSVSHYSENETIHIPSLKESAELEIAADIA 489
S D +S Y E + +P + ++EI ++A
Sbjct: 486 SDLMIDCQPPPMS-YHRAEVLTLPFKRRYEKIEIMPELA 523
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 202/410 (49%), Gaps = 45/410 (10%)
Query: 43 MLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEE 102
M+ LP++T GF+ +Y TE +IG+L+MEEL+ N R + S W +
Sbjct: 107 MMALPYITEHTGFTGTVYATEPTMQIGRLLMEELV--NFIERV---PKAQSASLWKNKDI 161
Query: 103 LELLPSALRKIALGEDGSELGG--GCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160
LLPS L+ D E+ C + V +SK+Q + + ++ G + + S
Sbjct: 162 QRLLPSPLK------DAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLS 215
Query: 161 SGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDI 220
SG +G+ NWII ++Y+SGS+ + H D +++ SD+++ + L+ + +
Sbjct: 216 SGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLILTGLTQIPT---- 271
Query: 221 DQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFL 280
+N D V E CS +V+ GG+VL+P GV
Sbjct: 272 -------------------ANPDGMVGEF------CSNLALTVRNGGNVLVPCYPSGVIY 306
Query: 281 QLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVK 339
LLE + +++ + L IP Y IS VA L ++ EWLC +Q K++ +P F H +
Sbjct: 307 DLLECLYQYIDSAGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAE 366
Query: 340 LIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDH-NSLLVLEN 398
LI+ K+ + ++H ++++PC++F+ H SLR G +H + W N+++ E
Sbjct: 367 LIQTNKLKHYRSIHG-DFSNDFRQPCVLFTGHPSLRFGDVVHFMELWGKSSLNTIIFTEP 425
Query: 399 EVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEW 448
+ A+ P++P++MK + C + +V LLK +QP V+ PE++
Sbjct: 426 DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQY 475
>sp|Q54SH0|INT9_DICDI Integrator complex subunit 9 homolog OS=Dictyostelium discoideum
GN=ints9 PE=3 SV=1
Length = 712
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 202/427 (47%), Gaps = 56/427 (13%)
Query: 42 GMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMK-W 100
+ LPF+T F KIY TE +IG+L++EEL+ M+ +Y ++ W
Sbjct: 127 NIYALPFITEYTNFQGKIYATEPTVQIGKLLLEELVQMDKQYSNSSINNNNNNNNLSDCW 186
Query: 101 EELELLPS------ALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGIL 154
+ +E+L + L D I ++ K+Q++RF E + G
Sbjct: 187 QNIEILEKLNVHNVGMENENLYRDSYRWKDLYKKI-DIEKSFEKIQSIRFNESIKHYGFE 245
Query: 155 IIKAFSSGLDIGACNWIISGAKG--NIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDL 211
I + SSG +G+ NW+I +KG + YIS S+ + S + F I D+++ S +
Sbjct: 246 CIPS-SSGYGLGSANWVIE-SKGFERVVYISDSSLSLSRYPTPFQLSPIDNPDVLILSKI 303
Query: 212 SSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLI 271
+ NN +++++ L CS +++ GG+VLI
Sbjct: 304 NHY-------------PNNPPDQMLSEL----------------CSNIGSTLQQGGTVLI 334
Query: 272 PINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFS 330
P G+ L L E +A ++ L +PIY +SSV++ +L+Y + EWL K +QE+ F
Sbjct: 335 PSYSCGIILDLFEHLADYLNKVGLPYVPIYFVSSVSKAVLSYADIYSEWLNKSKQERAFM 394
Query: 331 GDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQ--EPCIVFSPHWSLRLGPTIHLLRRWSG 388
+ F H L+++ + + VHS N+Q +PCI+F+ H S R+G L++ +
Sbjct: 395 PETPFLHQDLMRKGQFQAYQHVHS-----NFQANDPCIIFTGHPSCRIGDITTLIKLYDN 449
Query: 389 DHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGK---KLQKVQPLLKILQPKLVLFP 445
NS+L++E + D + VLPF S ++ + FL + L+ L PK ++ P
Sbjct: 450 PKNSILLIEPDFDFKSTVLPF---SKQISRIQFLPIDPRINFNEANLLISKLSPKHLIIP 506
Query: 446 EEWRTHV 452
++ +V
Sbjct: 507 RIYKNYV 513
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+ + M G+ IY+T I +++E+
Sbjct: 76 ALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------------------------- 107
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
RKIA+ + G +KDC+ KV + + + L IKA+ +G
Sbjct: 108 ------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA + I ++ Y N + + +L++ TE ++
Sbjct: 159 LGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI---------TESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E +LK+PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F + + P +VF+ L G ++ + R+W+G+ +++++
Sbjct: 304 HIKAF-----DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+ + M G+ IY+T I +++E+
Sbjct: 76 ALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------------------------- 107
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
RKIA+ + G +KDC+ KV + + + L IKA+ +G
Sbjct: 108 ------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA + I ++ Y N + + +L++ TE ++
Sbjct: 159 LGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI---------TESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E +LK+PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F + + P +VF+ L G ++ + R+W+G+ +++++
Sbjct: 304 HIKAF-----DRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+ + M G+ IY+T I +++E+
Sbjct: 76 ALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------------------------- 107
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
RKIA+ + G +KDC+ KV + + + L IKA+ +G
Sbjct: 108 ------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA + I ++ Y N + + +L++ TE ++
Sbjct: 159 LGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI---------TESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E +LK+PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F + + P +VF+ L G ++ + R+W+G+ +++++
Sbjct: 304 HIKAF-----DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+ + M G+ IY+T I +++E+
Sbjct: 76 ALPYFSEMVGYDGPIYMTHPTQAICPILLEDY---------------------------- 107
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
RKIA+ + G +KDC+ KV + + + L IKA+ +G
Sbjct: 108 ------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA + I ++ Y N + + +L++ TE ++
Sbjct: 159 LGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLI---------TESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E +LK+PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F + + P +VF+ L G ++ + R+W+G+ +++++
Sbjct: 304 HIKAF-----DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/352 (20%), Positives = 125/352 (35%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+ + M G+ IY+T+ I +++E+
Sbjct: 76 ALPYFSEMVGYDGPIYMTQPTQAICPILLEDY---------------------------- 107
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
RKIA+ + G +KDC+ KV + + + L IKA+ +G
Sbjct: 108 ------RKIAVDKKGE---ANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA + I ++ Y N + + + SL TE ++
Sbjct: 159 LGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW---------IDKCRPSLLITESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E LK PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F + + P +VF+ L G ++ + R+W+G+ +++++
Sbjct: 304 HIKAF-----DRAFADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/352 (20%), Positives = 127/352 (36%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+ + M G+ IY+T I +++E+ YR+ ++ E
Sbjct: 76 ALPYFSEMVGYDGPIYMTHPTKAICPILLED-------YRKITVDKKG---------ETN 119
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
S + +KDC+ KV + + + L IKA+ +G
Sbjct: 120 FFTSQM---------------------IKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA + I ++ Y N + + DL++ TE ++
Sbjct: 159 LGAAMFQIKVGCESVVYTGDYNMTPDRHLGAAWIDKCRPDLLI---------TESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E +LK PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMNLKAPIYFSTGLTEKANHYYKLFITW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F + + P +VF+ L G ++ + R+W+G+ +++++
Sbjct: 304 HIKAF-----DRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/352 (19%), Positives = 126/352 (35%), Gaps = 77/352 (21%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LP+++ M G+ IY+T I +++E+
Sbjct: 76 ALPYMSEMVGYDGPIYMTHPTKAICPILLEDF---------------------------- 107
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD 164
RKI + + G +KDC+ KV L + + L IKA+ +G
Sbjct: 108 ------RKITVDKKGET---NFFTSQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHV 158
Query: 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSS 224
+GA I ++ Y N + + D+++ +E ++
Sbjct: 159 LGAAMVQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPDILI---------SESTYATT 209
Query: 225 FSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLE 284
D E + L E+VE GG VLIP+ +G +L
Sbjct: 210 IRDSKRCRER--DFLKKVHETVER-----------------GGKVLIPVFALGRAQELCI 250
Query: 285 QIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEK 344
+ F E +LK PIY + + E+ Y W Q+ K F +F K
Sbjct: 251 LLETFWERMNLKAPIYFSTGLTEKANHYYKLFITW-TNQKIRKTFVQRNMFEF------K 303
Query: 345 KIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
I F ++ + P +VF+ L G ++ + ++W+G+ +++++
Sbjct: 304 HIKAFDRSYA-----DNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/371 (19%), Positives = 148/371 (39%), Gaps = 80/371 (21%)
Query: 33 ILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES 92
+L + P+ + GLP+L G +A +Y T ++GQ+ + +L+ +++ +F
Sbjct: 58 VLISHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEF------ 111
Query: 93 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG 152
Q +++++ A K+ E+ YN
Sbjct: 112 ---QHYSLDDVDM---AFEKV--------------------------------EQVKYNQ 133
Query: 153 ILIIKAFSSGLDIGA--CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210
+++K SG++ A +I G+ I I+G + + +DF++R
Sbjct: 134 TVVLKG-DSGVNFTAMPAGHMIGGSMWRICRITGEDII--YCVDFNHR------------ 178
Query: 211 LSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDE--SVEEMEKLAFICSCAIDSVKAGGS 268
+D S S DN N L+ + +++ ++ ++ + + + +V+ G
Sbjct: 179 -------KDRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGD 231
Query: 269 VLIPINRVGVFLQ---LLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQ 325
+I I+ G L+ LL+Q+ + + ++S VA ++ + + EW+
Sbjct: 232 CMIVIDTAGRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWM----D 287
Query: 326 EKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRR 385
EKLF D A K +++ VHS L+ + P +V + G + L
Sbjct: 288 EKLFRYDSSSARYNPFTLKNVNL---VHSHLELIKIRSPKVVLCSSQDMETGFSRELFLD 344
Query: 386 WSGDHNSLLVL 396
W D + ++L
Sbjct: 345 WCADQRNGVIL 355
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 78/377 (20%), Positives = 135/377 (35%), Gaps = 75/377 (19%)
Query: 93 SGPQWMKWEELELLPSAL---RKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEAC 149
+GP +M + L P L R++ + G E H+ +C+ KV + +
Sbjct: 86 NGPIYMSYPTKALSPLMLEDYRRVMVDRRGEE---ELFTTTHIANCMKKVIAIDLKQTIQ 142
Query: 150 YNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 209
+ L I+A+ +G +GA I Y N + +
Sbjct: 143 VDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHL---------------- 186
Query: 210 DLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVE------EMEKLAFICSCAIDSV 263
ID+ +L+ S S Y ++ E E L + C V
Sbjct: 187 ------GAAKIDRLQL--------DLLISESTYATTIRGSKYPREREFLQAVHKC----V 228
Query: 264 KAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQ 323
GG LIP +G +L + + E ++K+PIY S + + Y + W +
Sbjct: 229 AGGGKALIPSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQN 288
Query: 324 RQEKLFSGDPL-FAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHL 382
+EK + +P F +VK IH P PC++F+ L G ++ +
Sbjct: 289 VKEKHNTHNPFDFKNVKDFDRSLIHA-PG------------PCVLFATPGMLCAGFSLEV 335
Query: 383 LRRWSGDHNSLLVLENEVDAELA---VLPFKPISM------------KVLQCSFLSGKKL 427
+ W+ +L+ L A ++ KP ++ KV Q +F
Sbjct: 336 FKHWAPSPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDA 395
Query: 428 QKVQPLLKILQPKLVLF 444
+ + L K L PK V+
Sbjct: 396 KGIMDLTKFLSPKNVVL 412
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 35/213 (16%)
Query: 261 DSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLAYTNTIPEW 319
++++ GG V+IP+ +G ++L I ++ L+ +PIY S+ Y + I W
Sbjct: 204 ETIENGGKVIIPVFAIGRAQEILLIINNYIRSGKLRDVPIYTDGSLIHATAVYMSYI-NW 262
Query: 320 LCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPK--LLMNWQEPCIVFSPHWSLRLG 377
L + +K + E +I+ F + L+ N +EPCI+ S ++ G
Sbjct: 263 LNPK--------------IKNMVENRINPFGEIKKADESLVFN-KEPCIIVSTSGMVQGG 307
Query: 378 PTIHLLRRWSGDHNSLLVLENEVDAELA---------VLPFK---PISMKVLQCSFLS-G 424
P + L+ N L++ + + L + PFK PI KV++ F + G
Sbjct: 308 PVLKYLKLLKDPKNKLILTGYQAEGTLGRELEEGAKEIQPFKNKIPIRGKVVKIEFSAHG 367
Query: 425 KKLQKVQPLLKILQPK--LVLFPEEWRTHVSFS 455
V+ + KI +P+ +V+ E +++ +SF+
Sbjct: 368 DYNSLVRYIKKIPKPEKAIVMHGERYQS-LSFA 399
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/294 (19%), Positives = 106/294 (36%), Gaps = 74/294 (25%)
Query: 33 ILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES 92
+L + M + LP+ + G SA +Y TE R+G L + Y F +
Sbjct: 58 VLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTL---------YDYFISRRQV 108
Query: 93 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG 152
S ++++ V L++ + N
Sbjct: 109 SDFDLFTLDDIDA-----------------------------AFQNVVRLKYSQNHLLND 139
Query: 153 I---LIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRA---IQGSDLI 206
++I +G D+G W I+ ++ Y A+DF++R + G+ L
Sbjct: 140 KGEGIVIAPHVAGHDLGGTVWKITKDGEDVVY----------AVDFNHRKERHLNGTAL- 188
Query: 207 LYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAG 266
SF + N+L+N+ V + ++ + + G
Sbjct: 189 ----------------GSFVRPAVLITDAYNALNNH---VYKRQQDQDFIDALVKVLTGG 229
Query: 267 GSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 320
GSVL+PI+ G L++L + + L PIY +++V+ + Y + EW+
Sbjct: 230 GSVLLPIDTAGRVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWM 283
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 261 DSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWL 320
++ GG VLIP+ VG +L+ + P+Y+ + E +T PE+L
Sbjct: 401 ETTDRGGKVLIPVFGVGRAQELMLVLEEGYNQGIFNAPVYLDGMIWEATAIHT-AYPEYL 459
Query: 321 CKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHSP---KLLMNWQEPCIVFSPHWSLRL 376
K+ ++K+F GD F VF V S + +++ EPC++ + L
Sbjct: 460 SKEMRQKIFHEGDNPFLS---------EVFKRVGSTNERRKVIDSDEPCVILATSGMLTG 510
Query: 377 GPTIHLLRRWSGDHNSLLVL 396
GP++ L+ + D + ++
Sbjct: 511 GPSVEYLKHLAPDEKNAIIF 530
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 26/188 (13%)
Query: 249 MEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLL----EQIAIFMECSSLKIPIYIISS 304
+EK A + + +++ GG VL+P+ +G +LL E ++ S +PIY SS
Sbjct: 223 LEKEARLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRS--VPIYYASS 280
Query: 305 VAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQE- 363
+A + +A T + + K+ E+ +F V S + L + +
Sbjct: 281 LARKCMAIFQTYVNMMNDNIR-------------KIFAERNPFIFRFVKSLRNLEKFDDI 327
Query: 364 -PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELAVLPFKPISMKVLQCSF 421
P ++ + L+ G + LL RW+ D N+LL+ V+ +A K I+ + ++
Sbjct: 328 GPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEGTMA----KQITNEPIEIVS 383
Query: 422 LSGKKLQK 429
LSG+K+ +
Sbjct: 384 LSGQKIPR 391
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 133/359 (37%), Gaps = 90/359 (25%)
Query: 45 GLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104
LPF T M G+ IY+T I +++E+ YR+ E G E
Sbjct: 75 ALPFFTEMCGYDGPIYMTLPTKAICPILLED-------YRKI--TVEKKG-------ETN 118
Query: 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKV------QTLRFGEEACYNGILIIKA 158
+ + +KDC+ KV QT++ EE L IKA
Sbjct: 119 FFTAQM---------------------IKDCMKKVIPVNLHQTIKVDEE------LSIKA 151
Query: 159 FSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTE 218
+ +G +GA + ++ Y N + + D+++ TE
Sbjct: 152 YYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDRHLGSAWIDQVKPDVLI---------TE 202
Query: 219 DIDQSSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGV 278
++ D E + L E VE+ GG VLIP+ +G
Sbjct: 203 TTYATTIRDSKRGRER--DFLKRIHECVEK-----------------GGKVLIPVFALGR 243
Query: 279 FLQLLEQIAIFMECSSL-KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAH 337
+L I + E +L IPIY + +AE+ Y W Q+ ++ F +F
Sbjct: 244 VQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINW-TNQKIKQTFVKRNMF-D 301
Query: 338 VKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL 396
K IK + H+ V +P + ++F+ L G ++ + ++W+ + ++ ++
Sbjct: 302 FKHIKPFQSHL---VDAPGAM-------VLFATPGMLHAGASLEVFKKWAPNELNMTII 350
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 120/306 (39%), Gaps = 39/306 (12%)
Query: 240 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 295
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 296 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSP 355
IPIY SS+A++ +A T + + ++++ +P VF + +
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF-------------VFKHISNL 311
Query: 356 KLLMNWQE--PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELAVLPFK-- 410
K + ++ + P +V + ++ G + L W D N +++ V+ LA
Sbjct: 312 KSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371
Query: 411 -----------PISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTS 459
P+ M V SF + Q+ ++ L+P V+ + + + +
Sbjct: 372 EEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQN--EMARLKA 429
Query: 460 FSVSHYSENETIHI----PSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNH 515
+ Y +N+ +HI P E+ L + +K + +K R+ G L +
Sbjct: 430 ALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRN 489
Query: 516 GKHQLL 521
+ +L
Sbjct: 490 FNYHIL 495
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 40.8 bits (94), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 120/306 (39%), Gaps = 39/306 (12%)
Query: 240 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 295
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 296 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSP 355
IPIY SS+A++ +A T + + ++++ +P VF + +
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF-------------VFKHISNL 311
Query: 356 KLLMNWQE--PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELAVLPFK-- 410
K + ++ + P +V + ++ G + L W D N +++ V+ LA
Sbjct: 312 KSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371
Query: 411 -----------PISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTS 459
P+ M V SF + Q+ ++ L+P V+ + + + +
Sbjct: 372 EEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQN--EMARLKA 429
Query: 460 FSVSHYSENETIHI----PSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNH 515
+ Y +N+ +HI P E+ L + +K + +K R+ G L +
Sbjct: 430 ALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRN 489
Query: 516 GKHQLL 521
+ +L
Sbjct: 490 FNYHIL 495
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 120/306 (39%), Gaps = 39/306 (12%)
Query: 240 SNYDESVEEM--EKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS--L 295
S Y + E E+ A C+ D V GG LIP+ +G +LL + + +
Sbjct: 205 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 264
Query: 296 KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSP 355
IPIY SS+A++ +A T + + ++++ +P VF + +
Sbjct: 265 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF-------------VFKHISNL 311
Query: 356 KLLMNWQE--PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELAVLPFK-- 410
K + ++ + P +V + ++ G + L W D N +++ V+ LA
Sbjct: 312 KSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371
Query: 411 -----------PISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDVTS 459
P+ M V SF + Q+ ++ L+P V+ + + + +
Sbjct: 372 EEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQN--EMARLKA 429
Query: 460 FSVSHYSENETIHI----PSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNH 515
+ Y +N+ +HI P E+ L + +K + +K R+ G L +
Sbjct: 430 ALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRN 489
Query: 516 GKHQLL 521
+ +L
Sbjct: 490 FNYHIL 495
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 66/371 (17%), Positives = 144/371 (38%), Gaps = 80/371 (21%)
Query: 33 ILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEES 92
+L + P+ + GLP+L G +A +Y T ++GQ+ + +++ +++ +F
Sbjct: 58 VLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEF------ 111
Query: 93 SGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG 152
+ L+ + +A K+ E+ YN
Sbjct: 112 ------EHYTLDDVDTAFEKV--------------------------------EQVKYNQ 133
Query: 153 ILIIKAFSSGLDIGA--CNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210
+++K SG+ A ++ G+ I ++G + + +DF+++
Sbjct: 134 TVVLKG-DSGVHFTALPAGHMLGGSIWRICRVTGEDIV--YCVDFNHK------------ 178
Query: 211 LSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDE--SVEEMEKLAFICSCAIDSVKAGGS 268
++ SF DN N L+ + +++ + ++ + + + +V+ G
Sbjct: 179 -----KERHLNGCSF--DNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGD 231
Query: 269 VLIPINRVGVFLQ---LLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCKQRQ 325
+I I+ G L+ LL+Q+ + + ++S VA ++ + + EW+
Sbjct: 232 CMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWM----N 287
Query: 326 EKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRR 385
EKLF D A K + + HS + LM + P +V + G + L
Sbjct: 288 EKLFKYDSSSARYNPFTLKHVTL---CHSHQELMRVRSPKVVLCSSQDMESGFSRELFLD 344
Query: 386 WSGDHNSLLVL 396
W D + ++L
Sbjct: 345 WCSDPRNGVIL 355
>sp|Q12102|CFT2_YEAST Cleavage factor two protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CFT2 PE=1 SV=1
Length = 859
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 261 DSVKAG----GSVLIPINRVGVFLQLLEQI-AIFMECSSL----KIPIYIISSVAEELLA 311
D++K G GSV+IP++ G FL L Q+ + E + + ++P+ I+S L
Sbjct: 232 DTLKKGLSSDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLT 291
Query: 312 YTNTIPEWL 320
Y ++ EWL
Sbjct: 292 YAKSMLEWL 300
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 263 VKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLCK 322
++ GG+VL+P++ G L+LL + PIY ++ V+ + Y + EW+
Sbjct: 227 LEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSD 286
Query: 323 QRQEKL-FSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIH 381
+ S D F L++ HV ++ L P +V + SL G
Sbjct: 287 SISKSFETSRDNAF----LLR----HVTLLINKTDLDNAPPGPKVVLASMASLEAGFARE 338
Query: 382 LLRRWSGDHNSLLVL 396
+ W+ D +L++
Sbjct: 339 IFVEWANDPRNLVLF 353
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 35.8 bits (81), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 21/150 (14%)
Query: 263 VKAGGSVLIPINRVGVFLQLL----EQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPE 318
+K GG VL+P+ +G +LL E A E S +PIY S++A++ ++ T
Sbjct: 246 IKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHS--VPIYYASALAKKCISVYQTYIH 303
Query: 319 WLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQE--PCIVFSPHWSLRL 376
+ + + D F VF + + + L +++ PC++ + ++
Sbjct: 304 TMNDHIRTRFNRRDNPF------------VFKHISNLRSLEKFEDRGPCVMMASPGFMQS 351
Query: 377 GPTIHLLRRWSGD-HNSLLVLENEVDAELA 405
G + LL RW+ D N L+V V+ +A
Sbjct: 352 GVSRELLERWAPDKRNGLIVSGYSVEGTMA 381
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 33.9 bits (76), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 107/277 (38%), Gaps = 51/277 (18%)
Query: 136 ISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISG-SNFASGHAMD 194
+ K++ +R+ ++ +NGI + F++G +GA ++I A I Y S H M
Sbjct: 159 LEKIEKVRYRQKVEHNGIKV-TCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMG 217
Query: 195 FDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNSLSNYDESVEE--MEKL 252
+ ++ LI+ S Y V E +E+
Sbjct: 218 AETPPVKVDVLIIES-------------------------------TYGVQVHEPRLERE 246
Query: 253 AFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSL--KIPIYIISSVAEELL 310
S V+ G LIP+ +G +LL + + + +PIY S++A++ +
Sbjct: 247 KRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCM 306
Query: 311 AYTNTIPEWLCKQRQEKLFSGDPL-FAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFS 369
T + + + + +P F H+K IK + S + + PC+ +
Sbjct: 307 GVYRTYINMMNDRVRAQFDVSNPFEFKHIKNIK--------GIES----FDDRGPCVFMA 354
Query: 370 PHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA 405
L+ G + L RW D N +++ V+ LA
Sbjct: 355 SPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGTLA 391
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 25/142 (17%)
Query: 266 GGSVLIPINRVGVFLQLLEQIAIFMECSSLK-----IPIYIISSVAEELLA----YTNTI 316
GG +L+P+ +G +LL I E SL I IY SS+A + +A YTN +
Sbjct: 251 GGRILMPVFALGRAQELL---LILEEYWSLNDDLQNINIYYASSLARKCMAVYQTYTNIM 307
Query: 317 PEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQE--PCIVFSPHWSL 374
+ + +L + + K++ F + S K L +Q+ PC+V + L
Sbjct: 308 NDSI------RLTT-----SATNSSKKQNPFQFKFIKSIKNLDKFQDFGPCVVVASPGML 356
Query: 375 RLGPTIHLLRRWSGDHNSLLVL 396
+ G + LL RW+ D + +++
Sbjct: 357 QNGVSRELLERWAPDPKNAVIM 378
>sp|Q9SKC2|ARI11_ARATH Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana
GN=ARI11 PE=2 SV=1
Length = 542
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 547 LAELSKMGINGSVERCMTDAESE-DGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIV 605
L+ S NG +ER AE E F K++DP K+ E+RA + ++ A K +V
Sbjct: 447 LSCCSAEAENG-LERLHHCAEEELKQFIGKIEDPSKNFGELRAKLIDLTKATKTYFENLV 505
Query: 606 KAMENIL 612
KA+EN L
Sbjct: 506 KALENGL 512
>sp|Q05531|NIA_USTMA Nitrate reductase [NADPH] OS=Ustilago maydis (strain 521 / FGSC
9021) GN=NAR1 PE=2 SV=2
Length = 983
Score = 32.7 bits (73), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 517 KHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKV 576
+H L N PGG Q + L + G +VE C TDA +
Sbjct: 520 EHPTLAGNAPGGWMQRM--------NEAGLNPRYPQFGEAKAVESCKTDANTLAAAKEAK 571
Query: 577 QDPEKSMIEVRAAVTVISAAD 597
DP+ MI+ A T+I+AAD
Sbjct: 572 VDPKAIMIDPSKADTIITAAD 592
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 225,043,665
Number of Sequences: 539616
Number of extensions: 9541884
Number of successful extensions: 23849
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 23754
Number of HSP's gapped (non-prelim): 64
length of query: 615
length of database: 191,569,459
effective HSP length: 124
effective length of query: 491
effective length of database: 124,657,075
effective search space: 61206623825
effective search space used: 61206623825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)