Query 007166
Match_columns 615
No_of_seqs 284 out of 1284
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 19:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1138 Predicted cleavage and 100.0 1.4E-96 3E-101 760.8 37.1 559 5-613 52-652 (653)
2 KOG1136 Predicted cleavage and 100.0 7E-84 1.5E-88 638.8 31.9 403 10-494 24-465 (501)
3 KOG1135 mRNA cleavage and poly 100.0 9.5E-81 2.1E-85 665.1 40.9 511 10-608 22-761 (764)
4 COG1782 Predicted metal-depend 100.0 3.8E-77 8.2E-82 618.9 29.5 384 12-473 203-636 (637)
5 KOG1137 mRNA cleavage and poly 100.0 2.8E-78 6.1E-83 631.7 20.7 426 9-526 33-499 (668)
6 TIGR03675 arCOG00543 arCOG0054 100.0 3.2E-70 6.9E-75 614.3 39.2 388 11-473 196-629 (630)
7 COG1236 YSH1 Predicted exonucl 100.0 8.9E-61 1.9E-65 518.2 33.6 373 11-472 22-426 (427)
8 TIGR00649 MG423 conserved hypo 100.0 5.6E-32 1.2E-36 295.3 27.2 343 11-475 22-419 (422)
9 PF10996 Beta-Casp: Beta-Casp 99.9 2.6E-22 5.6E-27 182.6 10.4 118 279-404 1-121 (126)
10 COG0595 mRNA degradation ribon 99.8 8.4E-19 1.8E-23 193.4 25.9 348 12-477 31-431 (555)
11 PF13299 CPSF100_C: Cleavage a 99.5 6.8E-14 1.5E-18 132.1 8.0 117 482-608 1-161 (161)
12 TIGR03307 PhnP phosphonate met 99.3 2.7E-12 5.9E-17 129.7 8.8 140 12-214 36-178 (238)
13 PF12706 Lactamase_B_2: Beta-l 99.2 7.8E-12 1.7E-16 121.4 6.2 137 14-210 2-155 (194)
14 PRK11244 phnP carbon-phosphoru 99.2 2.3E-11 5E-16 123.8 9.4 141 12-215 46-189 (250)
15 PF07521 RMMBL: RNA-metabolisi 99.1 1E-10 2.3E-15 85.4 3.3 41 410-450 3-43 (43)
16 TIGR02649 true_RNase_BN ribonu 99.1 3.3E-10 7.1E-15 118.7 8.1 143 12-215 30-234 (303)
17 TIGR02651 RNase_Z ribonuclease 99.0 7.9E-10 1.7E-14 115.4 8.3 143 12-215 27-232 (299)
18 TIGR02108 PQQ_syn_pqqB coenzym 99.0 1.2E-09 2.5E-14 114.2 9.4 138 13-210 49-220 (302)
19 PRK05184 pyrroloquinoline quin 99.0 1.1E-09 2.5E-14 114.5 7.9 139 14-210 51-220 (302)
20 PRK02113 putative hydrolase; P 98.9 1.1E-09 2.3E-14 111.7 6.3 141 12-210 44-191 (252)
21 KOG1361 Predicted hydrolase in 98.9 4.4E-08 9.6E-13 105.7 18.4 120 28-214 110-232 (481)
22 smart00849 Lactamase_B Metallo 98.9 2.1E-09 4.6E-14 102.6 6.5 122 12-188 15-146 (183)
23 TIGR02650 RNase_Z_T_toga ribon 98.8 7E-08 1.5E-12 98.3 13.9 152 5-215 10-211 (277)
24 PRK00055 ribonuclease Z; Revie 98.7 2.4E-09 5.1E-14 109.8 -0.4 60 12-71 29-100 (270)
25 PRK11921 metallo-beta-lactamas 98.7 3.9E-08 8.4E-13 106.9 8.6 111 12-186 41-164 (394)
26 PRK02126 ribonuclease Z; Provi 98.6 1.9E-07 4.1E-12 98.9 12.0 61 12-73 27-94 (334)
27 PRK00685 metal-dependent hydro 98.6 1.8E-07 4E-12 93.6 10.5 133 9-209 14-164 (228)
28 PF00753 Lactamase_B: Metallo- 98.6 4.4E-07 9.4E-12 86.4 10.8 125 11-188 14-149 (194)
29 PRK05452 anaerobic nitric oxid 98.5 3E-07 6.6E-12 102.1 9.1 114 12-187 43-169 (479)
30 PRK04286 hypothetical protein; 98.4 3.3E-07 7.1E-12 95.8 7.3 149 12-210 24-210 (298)
31 TIGR03413 GSH_gloB hydroxyacyl 98.4 1.1E-06 2.4E-11 89.4 10.1 103 12-187 20-129 (248)
32 COG1234 ElaC Metal-dependent h 98.3 4.9E-08 1.1E-12 101.6 -2.2 59 12-70 29-99 (292)
33 COG0491 GloB Zn-dependent hydr 98.0 8.5E-06 1.8E-10 81.5 6.6 125 12-187 35-170 (252)
34 PLN02469 hydroxyacylglutathion 98.0 2.2E-05 4.7E-10 80.4 9.1 105 13-186 24-137 (258)
35 PLN02398 hydroxyacylglutathion 98.0 3.8E-05 8.3E-10 80.9 10.8 103 14-187 100-209 (329)
36 PRK11709 putative L-ascorbate 98.0 4.1E-05 8.8E-10 81.8 10.9 118 28-209 107-249 (355)
37 PLN02962 hydroxyacylglutathion 97.9 3.1E-05 6.6E-10 78.9 7.2 50 11-62 35-93 (251)
38 COG1237 Metal-dependent hydrol 97.8 1.3E-05 2.7E-10 80.2 4.0 56 12-67 31-96 (259)
39 PRK10241 hydroxyacylglutathion 97.8 6.3E-05 1.4E-09 76.8 7.6 51 12-63 22-78 (251)
40 COG0426 FpaA Uncharacterized f 97.5 0.0003 6.5E-09 74.9 7.9 113 11-187 43-168 (388)
41 PF02112 PDEase_II: cAMP phosp 97.4 0.0014 3.1E-08 69.2 12.3 40 29-70 78-124 (335)
42 TIGR00361 ComEC_Rec2 DNA inter 97.4 0.00051 1.1E-08 79.7 9.1 125 12-209 459-606 (662)
43 KOG2121 Predicted metal-depend 97.3 3.5E-05 7.7E-10 86.2 -0.9 57 152-215 594-651 (746)
44 PF13483 Lactamase_B_3: Beta-l 97.3 0.00028 6.1E-09 66.8 5.0 67 140-210 63-136 (163)
45 COG1235 PhnP Metal-dependent h 97.2 0.00011 2.3E-09 75.8 1.0 55 14-70 42-101 (269)
46 PRK11539 ComEC family competen 97.2 0.00078 1.7E-08 79.3 7.9 50 11-62 519-583 (755)
47 COG2333 ComEC Predicted hydrol 96.7 0.0059 1.3E-07 63.4 8.3 47 14-61 65-121 (293)
48 KOG0813 Glyoxylase [General fu 96.4 0.013 2.8E-07 59.5 8.4 90 28-186 49-141 (265)
49 PF07522 DRMBL: DNA repair met 95.3 0.094 2E-06 46.4 8.5 84 360-443 10-103 (110)
50 COG2248 Predicted hydrolase (m 93.7 0.27 5.9E-06 49.3 8.1 66 145-213 139-212 (304)
51 COG2220 Predicted Zn-dependent 92.3 0.99 2.1E-05 46.0 10.3 68 138-210 101-181 (258)
52 COG5212 PDE1 Low-affinity cAMP 87.2 1.1 2.3E-05 45.6 5.3 108 29-185 111-232 (356)
53 PF13788 DUF4180: Domain of un 62.5 16 0.00034 32.5 5.0 80 376-455 21-113 (113)
54 PRK00685 metal-dependent hydro 59.4 14 0.0003 36.5 4.7 52 422-473 168-228 (228)
55 PF11718 CPSF73-100_C: Pre-mRN 52.9 42 0.00092 33.4 6.9 56 504-560 2-64 (216)
56 PRK03094 hypothetical protein; 49.3 44 0.00095 27.8 5.2 69 541-609 8-76 (80)
57 PF13691 Lactamase_B_4: tRNase 48.0 13 0.00028 29.5 1.9 36 10-45 19-63 (63)
58 PRK00055 ribonuclease Z; Revie 44.6 32 0.0007 34.6 4.8 99 361-476 164-269 (270)
59 COG2015 Alkyl sulfatase and re 43.4 14 0.00031 40.6 1.9 62 247-321 363-427 (655)
60 PF12706 Lactamase_B_2: Beta-l 41.8 23 0.00049 33.6 3.0 26 421-446 168-193 (194)
61 PRK11188 rrmJ 23S rRNA methylt 35.4 39 0.00084 33.3 3.5 39 254-292 146-184 (209)
62 PF06057 VirJ: Bacterial virul 30.4 97 0.0021 30.3 5.2 45 429-478 129-173 (192)
63 PF14597 Lactamase_B_5: Metall 29.8 58 0.0013 31.5 3.5 33 149-184 104-136 (199)
64 COG2927 HolC DNA polymerase II 26.2 1.2E+02 0.0026 28.3 4.7 36 254-289 17-52 (144)
65 PF04413 Glycos_transf_N: 3-De 26.1 81 0.0018 30.5 3.9 98 364-464 22-123 (186)
66 PRK11244 phnP carbon-phosphoru 24.9 1.2E+02 0.0026 30.5 5.1 28 422-449 196-223 (250)
67 PF03698 UPF0180: Uncharacteri 24.9 2.1E+02 0.0045 23.9 5.5 35 541-575 8-42 (80)
68 KOG2862 Alanine-glyoxylate ami 24.4 1.5E+02 0.0033 31.2 5.6 39 413-451 115-155 (385)
69 PF13483 Lactamase_B_3: Beta-l 24.0 91 0.002 29.0 3.8 34 413-446 128-163 (163)
70 COG4004 Uncharacterized protei 23.7 4.5E+02 0.0098 22.5 7.2 48 540-588 11-58 (96)
71 KOG3592 Microtubule-associated 22.6 27 0.00058 40.3 -0.2 43 10-52 55-104 (934)
72 TIGR00438 rrmJ cell division p 22.2 1.7E+02 0.0036 28.0 5.3 40 251-290 124-163 (188)
73 COG2333 ComEC Predicted hydrol 22.0 1.9E+02 0.0042 30.2 5.9 95 389-484 180-285 (293)
74 TIGR03307 PhnP phosphonate met 20.4 95 0.0021 30.9 3.3 29 422-450 186-214 (238)
No 1
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.4e-96 Score=760.84 Aligned_cols=559 Identities=31% Similarity=0.532 Sum_probs=505.4
Q ss_pred ccccc-cCCcccccc------ccchhhhcc------------cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHH
Q 007166 5 IAHWT-FRHSQSFLH------CQMIFIKLY------------ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEA 64 (615)
Q Consensus 5 ~~~~~-~~~~~~lld------cg~~f~~~~------------~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~p 64 (615)
.|+|. .++.+-..| ||..|.++. .++| +|||| ++..+.||||+++++||.|+||||+|
T Consensus 52 ~p~~~~~~d~~kfq~~elke~~~rvfvesppe~~l~~t~lld~stiDvILIS--Ny~~mlgLPfiTentGF~gkiY~TE~ 129 (653)
T KOG1138|consen 52 LPSLDAQNDIQKFQDLELKECCGRVFVESPPEFTLPATHLLDASTIDVILIS--NYMGMLGLPFITENTGFFGKIYATEP 129 (653)
T ss_pred CccccccCccchhhhHHHHHhCCceEEcCCchhccchhhhhcccceeEEEEc--chhhhcccceeecCCCceeEEEEech
Confidence 57888 556666666 888898875 6899 99997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceee
Q 007166 65 AARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTL 142 (615)
Q Consensus 65 T~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v 142 (615)
|+++|++||+|++.++++ -+++++.+.||+..+.+.+|+++++. .+...|+++| +||+.|++|++.+
T Consensus 130 t~qiGrllMEelv~fier-----~p~~~S~~~Wk~k~~~~~lpsplk~~------~~~~~Wr~~ysl~Dv~sclsKVq~v 198 (653)
T KOG1138|consen 130 TAQIGRLLMEELVSFIER-----FPKASSAPLWKKKLDSELLPSPLKKA------VFLGSWRRLYSLDDVESCLSKVQGV 198 (653)
T ss_pred HHHHHHHHHHHHHHHHHh-----ccccccchhhhhhhhhhhcCCCchhh------ccccceeeeeehhHHHHHHHhheec
Confidence 999999999999999986 36888899999998889999988774 4678999999 9999999999999
Q ss_pred cCCcEEEeCCcEEEEEeccccccceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccC
Q 007166 143 RFGEEACYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQ 222 (615)
Q Consensus 143 ~Y~q~~~l~g~l~it~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~ 222 (615)
+|+|++++.|.+.+||.+|||.+|||+|.|...++++-|++|++..++|+.++|++.|+.+|+||+++++..+
T Consensus 199 ~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~lsql~------- 271 (653)
T KOG1138|consen 199 GFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTGLSQLP------- 271 (653)
T ss_pred ccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCcccccCCccccccccccccEEEEecccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999977665
Q ss_pred CcccCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCc-ccEEE
Q 007166 223 SSFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYI 301 (615)
Q Consensus 223 ~~~~~~~~~~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~-vpIy~ 301 (615)
+.+++ ++..+||..|..|++++|+||+||+|+|.+.||+++|.+..++.++. +||||
T Consensus 272 ----tanpd------------------~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~~P~yf 329 (653)
T KOG1138|consen 272 ----TANPD------------------EMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSDTPIYF 329 (653)
T ss_pred ----cCCcc------------------chhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcCCcceE
Confidence 23333 16678999999999999999999999999999999999999999986 99999
Q ss_pred ECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHH
Q 007166 302 ISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIH 381 (615)
Q Consensus 302 ~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ 381 (615)
+||+|++.+++.++.+|||+.++|+++|.++.||+|..++++++++++.++++. ++++++.|||||++|++|++|++.|
T Consensus 330 ISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~-fSndfrqpcvvf~~H~SlRfgdv~h 408 (653)
T KOG1138|consen 330 ISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGL-FSNDFRQPCVVFMGHPSLRFGDVVH 408 (653)
T ss_pred ecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHH-HhhhcccceeEecCCcchhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999874 8999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEec-CCcchhcccCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCcccccccc----
Q 007166 382 LLRRWSGDHNSLLVLE-NEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD---- 456 (615)
Q Consensus 382 ll~~~~~d~~N~IIl~-g~~~~~~~l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~---- 456 (615)
+++-|+.+|+|+||+| |++++++.+.||+|+.|++.+|||+.+.|++++.++++.+||+.|+++..+.+++....
T Consensus 409 ~~e~~g~sp~NsvI~tdpD~~~~~vl~PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlcpeaytqp~~~ap~~~i 488 (653)
T KOG1138|consen 409 FLECWGLSPKNSVIFTDPDFSYLLVLAPFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLCPEAYTQPIPLAPIKTI 488 (653)
T ss_pred HHHHhcCCCCCceEEeCCCCchhhhhcCCccccceeEeccccccccHHHHHHHHHHhCCCEEEChhhhcCCCCccchhee
Confidence 9999999999999975 56999999999999999999999999999999999999999999999999998876664
Q ss_pred --cCCceeeecCCCcEEEeCCCCeeEEEEEcHHHHhhhhhhhhhccC-CcceEEEEEEEeeCCeeeeecCCCCCCC----
Q 007166 457 --VTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKK-LNITRLKGRLFVNHGKHQLLPENEPGGS---- 529 (615)
Q Consensus 457 --~~~~~v~~p~~ge~i~l~~~~~~~~v~l~~~l~~~l~~~~~~~~~-~~~a~v~g~l~~~~~~~~l~~~~~~~~~---- 529 (615)
..-+++.+...+|.+++|.+++.++|.++++||++|.|++++ ++ +.+|+++|+|.++|++|.|+|...+...
T Consensus 489 ~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~-~~~~~iAtl~~~L~~~d~kh~Lvp~~~~~k~ek~s 567 (653)
T KOG1138|consen 489 SILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELR-QGEFGIATLKGVLLMKDGKHRLVPAKVSLKQEKSS 567 (653)
T ss_pred hhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhcc-CceeEEEEEEEEEEEecCceeeeecccchhhhhcc
Confidence 234567888899999999999999999999999999999997 55 8999999999999999999996554321
Q ss_pred CCCC------CceEecCCChHHHHHHHHHCCCceEEeeccccCCCCCceEEEEeCCCCcEEEEecceeEEEcC-CHHHHH
Q 007166 530 SQTR------PFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-DKNLAS 602 (615)
Q Consensus 530 ~~~~------~~~~~g~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~-~~~~r~ 602 (615)
+... +....|++.++++++.|.+.||....... +..+.+|...+ ++++|+++++.|||+|+ +..+|.
T Consensus 568 ~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~itvdn-----~g~g~~i~~~e-~enlikf~Em~t~Ii~~dd~~v~~ 641 (653)
T KOG1138|consen 568 SKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQITVDN-----TGEGKSIILIE-NENLIKFEEMGTHIICGDDNVVRQ 641 (653)
T ss_pred cccchHHhhhhhccCcccchHHHHHHHhhcchhheeeec-----CCCceEEEecc-CchhhhhhhccceEEECCCchhhh
Confidence 1111 34778999999999999999999886542 33567777766 67799999999999999 999999
Q ss_pred HHHHHHHHhhc
Q 007166 603 RIVKAMENILE 613 (615)
Q Consensus 603 ~l~~~~~~~l~ 613 (615)
.++|+...++.
T Consensus 642 ~~~di~~~llq 652 (653)
T KOG1138|consen 642 VLRDIDGKLLQ 652 (653)
T ss_pred hhHhhhhhhcc
Confidence 99999988763
No 2
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=7e-84 Score=638.83 Aligned_cols=403 Identities=19% Similarity=0.281 Sum_probs=345.5
Q ss_pred cCCccccccccch--hhhc------c--------cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHH
Q 007166 10 FRHSQSFLHCQMI--FIKL------Y--------ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLM 72 (615)
Q Consensus 10 ~~~~~~lldcg~~--f~~~------~--------~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~ll 72 (615)
..+.+|++||||. |.|. . -.-| +|+|||+|+||||||||.++-.||.||||||.||++++++|
T Consensus 24 i~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~GPIYMt~PTkaicPvl 103 (501)
T KOG1136|consen 24 IGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYDGPIYMTYPTKAICPVL 103 (501)
T ss_pred ECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCCCceEEecchhhhchHH
Confidence 4578999999973 3221 1 4558 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEe
Q 007166 73 MEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACY 150 (615)
Q Consensus 73 l~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l 150 (615)
|+|+.+++- +++|+. .+| +||.+||+++.++..+|++.+
T Consensus 104 LeDyRkv~v----------------------------------d~kGe~-----n~FT~q~I~nCMKKVv~i~l~qt~~v 144 (501)
T KOG1136|consen 104 LEDYRKVAV----------------------------------DRKGES-----NFFTTQDIKNCMKKVVAIDLHQTIQV 144 (501)
T ss_pred HHHHHHHhc----------------------------------cccCcc-----cceeHHHHHHHHhheeEeeehheEEe
Confidence 999976652 223442 466 999999999999999999999
Q ss_pred CCcEEEEEeccccccceEEEEEEeCCeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCC
Q 007166 151 NGILIIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDN 229 (615)
Q Consensus 151 ~g~l~it~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~ 229 (615)
+.++.|++|.|||+||+||+.|..+..+|+|||||+.. ++|..++-... .++|+||.|| ||+.
T Consensus 145 D~dl~IrayYAGHVLGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~-~rpdlLIsES--TYat------------- 208 (501)
T KOG1136|consen 145 DEDLQIRAYYAGHVLGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISES--TYAT------------- 208 (501)
T ss_pred cccceeeeeecccccceeEEEEEecceeEEEecCccCCcccccchhhhcc-ccCceEEeec--ccee-------------
Confidence 99999999999999999999999999999999999975 78887776555 4789999999 8861
Q ss_pred CchhhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCcccEEEECchHHHH
Q 007166 230 NNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEEL 309 (615)
Q Consensus 230 ~~~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~ 309 (615)
+.|++++-+| ++|++.+++++.+||+||||+||+||+|||+.+|+.||++.+|++|||+.+++++++
T Consensus 209 -----------tiRdskr~rE--RdFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~a 275 (501)
T KOG1136|consen 209 -----------TIRDSKRCRE--RDFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKA 275 (501)
T ss_pred -----------eeccccchhH--HHHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhccCCCccccccccchh
Confidence 1222332233 237789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChh-hhhcCCCCEEEEecCCCCCcchHHHHHHHHcC
Q 007166 310 LAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPK-LLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 388 (615)
Q Consensus 310 ~~~~~~~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~-~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~ 388 (615)
..||+.+..|.+++.++++. ..++|.+ +++...+ .....++|+|+|||||||.+|.|+..|++||+
T Consensus 276 n~yyk~fiswtn~~v~k~~~-~rNmfdf------------khiKpfd~~~~~~pGp~VlFatPGMLhaG~SLkvFK~W~~ 342 (501)
T KOG1136|consen 276 NMYYKMFISWTNENVKKKFV-ERNMFDF------------KHIKPFDRSYIEAPGPMVLFATPGMLHAGFSLKVFKKWCP 342 (501)
T ss_pred chHhhhhhhhcccchhhhhc-cCCcccc------------ccCChhhhhhhcCCCCEEEEcCCcccccccchHHHHhhCC
Confidence 99999999999999887654 3444433 2232222 23467899999999999999999999999999
Q ss_pred CCCCcEEecCCcchhcc-------------cCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCccccccc
Q 007166 389 DHNSLLVLENEVDAELA-------------VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFS 455 (615)
Q Consensus 389 d~~N~IIl~g~~~~~~~-------------l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l 455 (615)
||.|.||++||+..+.. .+....++|+|+++.||+|+|..++.++++++.|++|+|||||+..|..|
T Consensus 343 ~~~NlvimPGYcV~GTvG~kvl~G~~kvei~~~~~eirl~V~~maFSaHaDAkGIm~li~~csPknVmlVHGE~~kM~~L 422 (501)
T KOG1136|consen 343 DPLNLVIMPGYCVAGTVGHKVLNGATKVEIYGTKVEIRLKVEYMAFSAHADAKGIMQLIKQCSPKNVMLVHGEKSKMKFL 422 (501)
T ss_pred CccceEeecCceeccchhhhhhCCccEEEEeeeEEEEEEEEEEeeeccccCchhHHHHHHhcCcceEEEEeccchhhHHH
Confidence 99999999999988642 24456899999999999999999999999999999999999999999999
Q ss_pred c-----cCCceeeecCCCcEEEeCCCCeeEEEEEcHHHHhhhhh
Q 007166 456 D-----VTSFSVSHYSENETIHIPSLKESAELEIAADIASKFQW 494 (615)
Q Consensus 456 ~-----~~~~~v~~p~~ge~i~l~~~~~~~~v~l~~~l~~~l~~ 494 (615)
+ +.+++++.|.|||++.+++... +.++++++...++..
T Consensus 423 k~ki~~e~~ip~~mPaNGetv~i~s~~~-i~~ri~~~~~~~~~k 465 (501)
T KOG1136|consen 423 KEKIESEFDIPTFMPANGETVVISSTTY-IKARIPDEFLVSLSK 465 (501)
T ss_pred HHhhHhhcCCceeeCCCCCEEEecccce-eeecCcHHHHHHhcC
Confidence 7 4688999999999999999775 889999988777643
No 3
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=9.5e-81 Score=665.08 Aligned_cols=511 Identities=18% Similarity=0.283 Sum_probs=421.7
Q ss_pred cCCccccccccc------hhhh---cccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHH
Q 007166 10 FRHSQSFLHCQM------IFIK---LYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICM 79 (615)
Q Consensus 10 ~~~~~~lldcg~------~f~~---~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~ 79 (615)
+++-+||+|||- .+++ ...++| ||||||+++-|+|||||++.++|++++||||.|++.||++.|+|++..
T Consensus 22 iD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT~PV~~mG~m~myD~~~S 101 (764)
T KOG1135|consen 22 IDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYATLPVIKMGQMFMYDLYRS 101 (764)
T ss_pred EcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEecchhhhhhhhHHHHHhc
Confidence 457889999994 2333 338999 999999999999999999999999999999999999999999999865
Q ss_pred HHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeCCc---E
Q 007166 80 NMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGI---L 154 (615)
Q Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~g~---l 154 (615)
+.+ -++ +.+| +||+.||++|.+++|+|++.+.|. +
T Consensus 102 ~~~------------------------------------~~d----f~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl 141 (764)
T KOG1135|consen 102 HGN------------------------------------VGD----FDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGL 141 (764)
T ss_pred ccc------------------------------------ccc----ccccchhhhHHHHhheeeeeccceEEeccccCce
Confidence 421 012 4667 999999999999999999999854 9
Q ss_pred EEEEeccccccceEEEEEEeCCeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCCCchh
Q 007166 155 IIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWE 233 (615)
Q Consensus 155 ~it~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~~~~e 233 (615)
+||||+|||+||++.|.|...+|+|+|.-|++.. .+|..+...+.+.++.+|| |++.+.
T Consensus 142 ~itaynAGhmiGGsIWkI~k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllI-------------------Tda~~~- 201 (764)
T KOG1135|consen 142 TITAYNAGHMIGGSIWKISKVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLI-------------------TDANHA- 201 (764)
T ss_pred EEeeecCCCccCceEEEEEecCceEEEEEecccchhcccCCccccccCCcceEE-------------------eccccc-
Confidence 9999999999999999999999999997777764 4666555544444444444 444443
Q ss_pred hhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhC--CCc-ccEEEECchHHHHH
Q 007166 234 ELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECS--SLK-IPIYIISSVAEELL 310 (615)
Q Consensus 234 ~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~--~l~-vpIy~~s~~a~~~~ 310 (615)
. |.. .+++ .|.++|.+.|.++|++||+||||++..||++||+.+|+++|.+. ++. +||++.|+++.+++
T Consensus 202 -~--~~~---~~rk--kRDe~f~d~v~~~L~~~G~VlipVDtAgRvLELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tv 273 (764)
T KOG1135|consen 202 -L--YSQ---PRRK--KRDEQFLDTVLKTLRSGGNVLIPVDTAGRVLELALILDQLWSQSDAGLSQYPLAFLSYVSSRTV 273 (764)
T ss_pred -c--ccc---cchh--HHHHHHHHHHHHHhcCCCcEEEEecccHHHHHHHHHHHHHHhcccCCCcccceeeeeccchhHH
Confidence 0 111 1233 35577999999999999999999999999999999999999998 676 99999999999999
Q ss_pred HHHHHhHHhhhHHHHHHHhc-CCCCCcchhhhhcccccccCCcCChh-hhhcCCCCEEEEecCCCCCcchHHHHHHHHcC
Q 007166 311 AYTNTIPEWLCKQRQEKLFS-GDPLFAHVKLIKEKKIHVFPAVHSPK-LLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSG 388 (615)
Q Consensus 311 ~~~~~~~ewl~~~~~~~~~~-~~~pF~~~~l~k~~~l~~~~~i~s~~-~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~ 388 (615)
+|++++.|||+++..+.+.. ..+||.+... .-+++.+ ..+...+|+||+||.+.|+.|+|+++|-+|++
T Consensus 274 eyAKSmiEWmsdkl~k~fe~~r~NpFefrhi---------~l~~~~~dlsr~p~gpkVVlas~~~lE~Gfsrd~fl~w~~ 344 (764)
T KOG1135|consen 274 EYAKSMIEWMSDKLSKMFEEARNNPFEFRHI---------TLCHSLQDLSRVPPGPKVVLASVPDLECGFSRDLFLEWAS 344 (764)
T ss_pred HHHHHHHHHhhhHHHHhhhhccCCcceeeee---------eeecCHHHHhcCCCCCeEEEeeccchhcchhHHHHHHHhc
Confidence 99999999999999876653 5677755332 1133333 34445679999999999999999999999999
Q ss_pred CCCCcEEecCCcch-------------------------------------h----------------------------
Q 007166 389 DHNSLLVLENEVDA-------------------------------------E---------------------------- 403 (615)
Q Consensus 389 d~~N~IIl~g~~~~-------------------------------------~---------------------------- 403 (615)
||+|.|+||..-+. +
T Consensus 345 d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e~~r~e~~~~~~~~~~~~~~~~~~Sd~~ 424 (764)
T KOG1135|consen 345 DPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGERLRNEDALRLNVNRDVEIDSSHESDDS 424 (764)
T ss_pred CCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhhhhhhhhhHHhhccCCccccccccCCcc
Confidence 99999999730000 0
Q ss_pred ----------------------------------cccCCC----------------------------------------
Q 007166 404 ----------------------------------LAVLPF---------------------------------------- 409 (615)
Q Consensus 404 ----------------------------------~~l~~~---------------------------------------- 409 (615)
..|+|+
T Consensus 425 dd~d~~~~~~~~Hd~~~~~~~~~~~~f~~~~~~~~~MFPy~e~r~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~ 504 (764)
T KOG1135|consen 425 DDEDMENDTEVRHDIMSKAGKSTKDGFFKSAKSKHPMFPYIEERRKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDN 504 (764)
T ss_pred cccccccccccchhhhhccCCcccccccccccccCcccCCcHHhccccccccccCHHHcccccccchhhhhhccCCcccc
Confidence 001111
Q ss_pred ----------------------------ceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCccccccccc----
Q 007166 410 ----------------------------KPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV---- 457 (615)
Q Consensus 410 ----------------------------~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~~---- 457 (615)
+.++|+|.+++|.+.+|.+++.++|.+++|+++|||||..+..+.++.
T Consensus 505 ~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGisDgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~ 584 (764)
T KOG1135|consen 505 KSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGISDGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCAS 584 (764)
T ss_pred cccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccccchhHHHHHhccCccEEEEecCCchhhHHHHHHHHh
Confidence 268999999999999999999999999999999999999999888862
Q ss_pred ---CCceeeecCCCcEEEeCCCCeeEEEEEcHHHHhhhhhhhhhccCCcceEEEEEEEee----CC--------------
Q 007166 458 ---TSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVN----HG-------------- 516 (615)
Q Consensus 458 ---~~~~v~~p~~ge~i~l~~~~~~~~v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~----~~-------------- 516 (615)
....|++|+.||+|+++.+.+.++|+|++.|+++|+|++++ +.++||+.|++.++ ++
T Consensus 585 l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~--~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~ 662 (764)
T KOG1135|consen 585 LGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVG--DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKE 662 (764)
T ss_pred cCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeecc--cceeeeeehhhccccccccccccccceecchhhc
Confidence 23689999999999999999999999999999999999995 47999999999322 11
Q ss_pred ---------------eeeeecCCCCCCCCCCCCceEecCCChHHHHHHHHHCCCceEEeeccccCCCCCceEEEEeCCCC
Q 007166 517 ---------------KHQLLPENEPGGSSQTRPFLHWGSPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEK 581 (615)
Q Consensus 517 ---------------~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~ 581 (615)
+.+|.|.+. .+.|.|+++++|++++++|+|.|..+||++||.+|.+ .+++.-|.||+...
T Consensus 663 s~~~~~~e~et~~~~~l~l~pl~~--~~~P~h~~v~igd~rLadfKq~L~~kgi~aEf~gggl---L~~~g~VavRk~d~ 737 (764)
T KOG1135|consen 663 SVPEVNNEKETGSRSKLTLLPLPG--AEIPRHQAVLIGDLRLADFKQLLTEKGIQAEFKGGGL---LVCNGCVAVRKVDT 737 (764)
T ss_pred cccccccccccccccccccccCCc--ccCCcccceeecChhHHHHHHHHHhCCeEEEEecCcE---EEECCEEEEEEcCC
Confidence 122333333 2355688999999999999999999999999999887 78888999999999
Q ss_pred cEEEEecceeEEEcC-CHHHHHHHHHHH
Q 007166 582 SMIEVRAAVTVISAA-DKNLASRIVKAM 608 (615)
Q Consensus 582 ~~I~~~~~~t~I~~~-~~~~r~~l~~~~ 608 (615)
++|.+||+ .|+ +|++|+++||.+
T Consensus 738 G~i~ieG~----lse~fy~iR~lvYdq~ 761 (764)
T KOG1135|consen 738 GKITIEGC----LSEDFYKIRDLVYDQL 761 (764)
T ss_pred ceEEEecc----chHHHHHHHHHHHHHh
Confidence 99999999 999 999999999975
No 4
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=3.8e-77 Score=618.93 Aligned_cols=384 Identities=18% Similarity=0.270 Sum_probs=324.6
Q ss_pred Cccccccccchh----------hhcc---cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIF----------IKLY---ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELI 77 (615)
Q Consensus 12 ~~~~lldcg~~f----------~~~~---~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~ 77 (615)
++++|||||+.- .+.+ +.++ ||+|||||+||||.||||++ +||.||||||.||++|+-+|+.|++
T Consensus 203 eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy~GPVY~T~PTRDlm~LLq~Dyi 281 (637)
T COG1782 203 ESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YGYDGPVYCTPPTRDLMVLLQLDYI 281 (637)
T ss_pred CceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cCCCCCeeeCCCcHHHHHHHHHHHH
Confidence 789999999742 2211 4579 99999999999999999998 5999999999999999999999999
Q ss_pred HHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeCCcEE
Q 007166 78 CMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILI 155 (615)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~g~l~ 155 (615)
++.+. ++. .++| .||++++++..+++|++..++.++++
T Consensus 282 ~va~k-----------------------------------eg~-----~ppY~~k~v~~~lkhtItldYgevTDIaPDir 321 (637)
T COG1782 282 EVAEK-----------------------------------EGG-----EPPYESKDVRKVLKHTITLDYGEVTDIAPDIR 321 (637)
T ss_pred HHHHh-----------------------------------cCC-----CCCCCHHHHHHHHheeeeeccCcccccCCccE
Confidence 88752 132 3788 99999999999999999999999999
Q ss_pred EEEeccccccceEEEEEEeC--CeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCCCch
Q 007166 156 IKAFSSGLDIGACNWIISGA--KGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNW 232 (615)
Q Consensus 156 it~~~AGHiLGsa~~~I~~~--~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~~~~ 232 (615)
+|||+|||+||||+..+-++ ...|+||||+... ++...+++ ..+++.+.||||| |||+..|. .+
T Consensus 322 LTf~NAGHILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~-n~FpRvEtlimEs--TYGg~~d~--------q~-- 388 (637)
T COG1782 322 LTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPAN-NKFPRVETLIMES--TYGGRDDV--------QP-- 388 (637)
T ss_pred EEEecccchhcceeeEEEecCCceeEEEecccccceeeecChhh-ccCcchhheeeee--ccCCcccc--------Cc--
Confidence 99999999999999888775 5799999999986 45444443 3477899999999 99843221 11
Q ss_pred hhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHHH
Q 007166 233 EELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELLA 311 (615)
Q Consensus 233 e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~~ 311 (615)
+++|.| ++|.+.|.+|+++||+||||+||+||+||++..|+++++++.++ +|||+ ++|..++++
T Consensus 389 ------------~R~eaE--~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYl-DGMI~EatA 453 (637)
T COG1782 389 ------------PREEAE--KELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYL-DGMIWEATA 453 (637)
T ss_pred ------------cHHHHH--HHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceee-eeeeeehhh
Confidence 234433 56889999999999999999999999999999999999999888 99996 789999999
Q ss_pred HHHHhHHhhhHHHHHHHh-cCCCCCcchhhhhcccccccCCcCCh---hhhhcCCCCEEEEecCCCCCcchHHHHHHHHc
Q 007166 312 YTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHSP---KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWS 387 (615)
Q Consensus 312 ~~~~~~ewl~~~~~~~~~-~~~~pF~~~~l~k~~~l~~~~~i~s~---~~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~ 387 (615)
++..|+|||+...+.+.+ .+++||....+ ..+.+. +......+||||+||||||.||++++||+.|+
T Consensus 454 IhtaYPEyL~~~lr~~I~~~g~NPF~se~f---------~~V~~~~~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA 524 (637)
T COG1782 454 IHTAYPEYLNKELRERIFHEGENPFLSEIF---------KRVEGSDERQEIIESDEPAIILATSGMLNGGPVVEYFKHLA 524 (637)
T ss_pred hhhcCHHhhhHHHHHHHhcCCCCCccccce---------eecCChhHHHHHhcCCCCeEEEeccccccCCcHHHHHHHhC
Confidence 999999999999998888 68999966433 333332 23456679999999999999999999999999
Q ss_pred CCCCCcEEecCCcchhccc----------------C--CCceeeeEEEEe-ecccCCCHhhHHHHHHhcC--CCEEEEec
Q 007166 388 GDHNSLLVLENEVDAELAV----------------L--PFKPISMKVLQC-SFLSGKKLQKVQPLLKILQ--PKLVLFPE 446 (615)
Q Consensus 388 ~d~~N~IIl~g~~~~~~~l----------------~--~~~~v~~~v~~~-~fs~haD~~~l~~~i~~l~--P~~vilvH 446 (615)
+||+|++||+||+.++... + ...+++|+|+.+ +||+|+|..||+++++.++ |++|+++|
T Consensus 525 ~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMeV~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~H 604 (637)
T COG1782 525 PDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNMEVETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNH 604 (637)
T ss_pred CCCCceEEEEEeccCcchhhhhhcCceecccccCCCCeEEEEEEEEEEEecCcCCCccHHHHHHHHHhcCCCCceeEeec
Confidence 9999999999997775321 0 124789999999 7999999999999999995 56999999
Q ss_pred cCccccccccc-----CCceeeecCCCcEEEe
Q 007166 447 EWRTHVSFSDV-----TSFSVSHYSENETIHI 473 (615)
Q Consensus 447 G~~~~~~~l~~-----~~~~v~~p~~ge~i~l 473 (615)
|++.++..|+. ..+..++|.|.|+|.+
T Consensus 605 Ge~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 605 GEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred CChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 99999999983 4567899999999876
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=2.8e-78 Score=631.74 Aligned_cols=426 Identities=18% Similarity=0.256 Sum_probs=357.8
Q ss_pred ccCCccccccccc----------hhhh-cccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHH
Q 007166 9 TFRHSQSFLHCQM----------IFIK-LYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEEL 76 (615)
Q Consensus 9 ~~~~~~~lldcg~----------~f~~-~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~ 76 (615)
.+|+.+|+||||. +|.| .+.+.| +++|||+|+||+++|||+++++.|+|++|||+||+++++++|.|+
T Consensus 33 e~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~TkAi~kwllsdy 112 (668)
T KOG1137|consen 33 EYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPTKAIYKWLLSDY 112 (668)
T ss_pred EecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecchHHHHHhhhhcc
Confidence 3678999999994 3444 459999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeCCcE
Q 007166 77 ICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGIL 154 (615)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~g~l 154 (615)
+++... + +. ..|| .|+.++++|+++++|+|.++++| +
T Consensus 113 vrvs~~-----s------------------------------~~-----~~Ly~e~dl~~s~dKie~idfhe~~ev~g-I 151 (668)
T KOG1137|consen 113 VRVSNR-----S------------------------------GD-----DRLYTEGDLMESMDKIETIDFHETVEVNG-I 151 (668)
T ss_pred eEeeec-----c------------------------------Cc-----cccccchhHHHhhhhheeeeeccccccCC-e
Confidence 866421 0 12 2678 89999999999999999999986 8
Q ss_pred EEEEeccccccceEEEEEEeCCeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCCCchh
Q 007166 155 IIKAFSSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWE 233 (615)
Q Consensus 155 ~it~~~AGHiLGsa~~~I~~~~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~~~~e 233 (615)
+++||.|||+||+||+.+++++-+|+||||++.. +||......++. ++|++|+|| ||+-.
T Consensus 152 kf~p~~aGhVlgacMf~veiagv~lLyTGd~sreeDrhl~aae~P~~-~~dvli~es--tygv~---------------- 212 (668)
T KOG1137|consen 152 KFWPYHAGHVLGACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPT-GPDVLITES--TYGVQ---------------- 212 (668)
T ss_pred EEEeeccchhhhheeeeeeeceEEEEeccccchhhcccccchhCCCC-CccEEEEEe--eeeEE----------------
Confidence 9999999999999999999999999999999986 899888877654 789999999 88710
Q ss_pred hhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCC-C-cccEEEECchHHHHHH
Q 007166 234 ELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSS-L-KIPIYIISSVAEELLA 311 (615)
Q Consensus 234 ~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~-l-~vpIy~~s~~a~~~~~ 311 (615)
.+.+|.+ +.++|+..|+.++.|||+||||+||+||+|||+.+|+++|.++. + ++|||+.|++|++|+.
T Consensus 213 --------~h~~r~~--re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw~~h~~l~~iPiyyaSslakkcm~ 282 (668)
T KOG1137|consen 213 --------IHEPREE--REGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMG 282 (668)
T ss_pred --------ecCchHH--hhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhh
Confidence 1122333 44779999999999999999999999999999999999999984 5 4999999999999999
Q ss_pred HHHHhHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHHHHHHHcCCCC
Q 007166 312 YTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHN 391 (615)
Q Consensus 312 ~~~~~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~d~~ 391 (615)
.|++|+.-||+.+++.+. ..+||.+.. .+.+++.+ ..+.-+|||+.|+||||+.|.|+++|++||+|++
T Consensus 283 vfQtyv~~mnd~Irk~~~-~~Npfifk~---------vs~L~~~D-~f~D~gP~vv~aspgmlqsglSRelfe~wcsD~k 351 (668)
T KOG1137|consen 283 VFQTYVNMMNDRIRKQSA-LRNPFIFKH---------VSILRTGD-WFDDEGPSVVMASPGMLQSGLSRELFERWCSDSK 351 (668)
T ss_pred hHheehhhhhhhhHHhhc-cCCceEeec---------cccccccc-cccccCCceeEeCchHhhhhhhHHHHHHhCCCCC
Confidence 999999999999988554 356654321 12222221 1245799999999999999999999999999999
Q ss_pred CcEEecCCcchhcc--------------cCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCccccccccc
Q 007166 392 SLLVLENEVDAELA--------------VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSDV 457 (615)
Q Consensus 392 N~IIl~g~~~~~~~--------------l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~~ 457 (615)
|++|++||+..+.. -++..|++|+|.+++|+||.|+.|..++++.++|+++||||||.+.|.+|+.
T Consensus 352 N~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi~~i~~~~lilVHGE~neM~rLKs 431 (668)
T KOG1137|consen 352 NAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFIADITPPHLILVHGEANEMMRLKS 431 (668)
T ss_pred CcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHHHHhCCCeEEEEecccchhHHHHH
Confidence 99999999877531 1456799999999999999999999999999999999999999999999971
Q ss_pred ----------CCceeeecCCCcEEEeCCCCeeEEEEEcHHHHhhhhhhhhhccCCcceEEEEEEEeeCCeeeeecCCCC
Q 007166 458 ----------TSFSVSHYSENETIHIPSLKESAELEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHGKHQLLPENEP 526 (615)
Q Consensus 458 ----------~~~~v~~p~~ge~i~l~~~~~~~~v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~~~~~~l~~~~~~ 526 (615)
..+.++.|+|+|.+++.+.++. .++....+|. . +. ..+++|.|+.++.+|.++.+.+-
T Consensus 432 ~L~~~f~d~kv~i~v~tprn~e~v~l~f~~ek-lak~~G~~a~------~--p~--~~~~sgiLv~~~~~~~ils~edL 499 (668)
T KOG1137|consen 432 ALEAAFRDGKVPIDVSTPRNCEDVELYFPGEK-LAKTTGSLAE------V--PK--EDRVSGILVSYGFSYAILSPEDL 499 (668)
T ss_pred HHHHHhccCCCcceecCCccceEeeeecCcch-hhhhhhcccc------C--Cc--cceEEEEEEecCCceeeccHHHh
Confidence 3568999999999999998872 1222222222 1 11 15999999999999999877664
No 6
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=3.2e-70 Score=614.31 Aligned_cols=388 Identities=18% Similarity=0.242 Sum_probs=319.9
Q ss_pred CCccccccccchhhh-------------cccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHH
Q 007166 11 RHSQSFLHCQMIFIK-------------LYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEEL 76 (615)
Q Consensus 11 ~~~~~lldcg~~f~~-------------~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~ 76 (615)
.+.++|||||+.+.. ..+.+| +|||||+|+||+|+||+|++. ||+||||||+||++++++++.|+
T Consensus 196 ~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~-g~~gpIY~T~pT~~l~~~ll~D~ 274 (630)
T TIGR03675 196 PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY-GYDGPVYCTPPTRDLMTLLQLDY 274 (630)
T ss_pred CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHh-CCCCceeecHHHHHHHHHHHHHH
Confidence 467899999975421 115689 999999999999999999974 99999999999999999999999
Q ss_pred HHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeCCcE
Q 007166 77 ICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGIL 154 (615)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~g~l 154 (615)
++++.. .+. .++| +|+++++.++.+++|+|++++.+++
T Consensus 275 ~~i~~~-----------------------------------~g~-----~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i 314 (630)
T TIGR03675 275 IDVAQR-----------------------------------EGK-----KPPYSSKDVREALKHTITLDYGEVTDIAPDI 314 (630)
T ss_pred HHHHHh-----------------------------------cCC-----CCCCCHHHHHHHHhccEEeCCCCeEEecCCE
Confidence 876531 011 3677 9999999999999999999998789
Q ss_pred EEEEeccccccceEEEEEEeC--CeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCCCc
Q 007166 155 IIKAFSSGLDIGACNWIISGA--KGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNN 231 (615)
Q Consensus 155 ~it~~~AGHiLGsa~~~I~~~--~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~~~ 231 (615)
++|+++|||++|||+|.++.+ ..+|+||||++.. +++..++. ..+.++|+||+|| ||+...+ .++
T Consensus 315 ~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~-~~~~~vD~LI~ES--TYg~~~~--------~~~- 382 (630)
T TIGR03675 315 KLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAV-NKFPRVETLIMES--TYGGRDD--------YQP- 382 (630)
T ss_pred EEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCCCcCccchh-hcCCCCCEEEEeC--ccCCCCC--------CCC-
Confidence 999999999999999998874 4799999999875 34444332 2346799999999 8972110 011
Q ss_pred hhhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCc-ccEEEECchHHHHH
Q 007166 232 WEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLK-IPIYIISSVAEELL 310 (615)
Q Consensus 232 ~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~-vpIy~~s~~a~~~~ 310 (615)
++++ ..++|++.|.+|+++||+||||+|++||+|||+++|+++|+++.++ +|||++| |+.+++
T Consensus 383 -------------~r~~--~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t 446 (630)
T TIGR03675 383 -------------SREE--AEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEAT 446 (630)
T ss_pred -------------CHHH--HHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHH
Confidence 1222 3366899999999999999999999999999999999999988885 9999976 999999
Q ss_pred HHHHHhHHhhhHHHHHHHh-cCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHHHHHHHcCC
Q 007166 311 AYTNTIPEWLCKQRQEKLF-SGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGD 389 (615)
Q Consensus 311 ~~~~~~~ewl~~~~~~~~~-~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~d 389 (615)
++++.|+|||++..++.++ .+++||.+..+ +.+++...........+|||||||||||++|++++||++|++|
T Consensus 447 ~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~------~~v~~~~~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d 520 (630)
T TIGR03675 447 AIHTAYPEYLNKELRERIFHEGENPFLSEIF------VRVEGSDERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPD 520 (630)
T ss_pred HHHHHhHHHhCHHHHHHHhhcCCCcccCCce------EEeCCHHHHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCC
Confidence 9999999999998887766 57889866433 2222221112334568999999999999999999999999999
Q ss_pred CCCcEEecCCcchhcc-------------cC----CCceeeeEEEEee-cccCCCHhhHHHHHHhcCC--CEEEEeccCc
Q 007166 390 HNSLLVLENEVDAELA-------------VL----PFKPISMKVLQCS-FLSGKKLQKVQPLLKILQP--KLVLFPEEWR 449 (615)
Q Consensus 390 ~~N~IIl~g~~~~~~~-------------l~----~~~~v~~~v~~~~-fs~haD~~~l~~~i~~l~P--~~vilvHG~~ 449 (615)
|+|+|||+||+.++.. .+ ...+++|+|+.++ ||||||+++|++|++.++| ++|+||||++
T Consensus 521 ~kn~IifvGyqa~gTlGr~l~~g~~~i~i~g~~~~~~i~v~~~V~~~~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~ 600 (630)
T TIGR03675 521 PRNSLVFVGYQAEGTLGRRIQSGWREIPLTDEGKTETIKINMEVETVEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEP 600 (630)
T ss_pred CCCeEEEeCCCCCCchHHHHhcCCcEEEecCCCCceEEEEEEEEEEeCCccccCCHHHHHHHHHhcCCCCCEEEEEcCCH
Confidence 9999999999877421 11 3468999999995 9999999999999999965 8999999999
Q ss_pred cccccccc-----CCceeeecCCCcEEEe
Q 007166 450 THVSFSDV-----TSFSVSHYSENETIHI 473 (615)
Q Consensus 450 ~~~~~l~~-----~~~~v~~p~~ge~i~l 473 (615)
+++..|++ .++++++|.+||++++
T Consensus 601 ~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 601 SKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred HHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 99999972 4789999999999986
No 7
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-61 Score=518.23 Aligned_cols=373 Identities=17% Similarity=0.190 Sum_probs=308.6
Q ss_pred CCccccccccchhhhc--------ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHH
Q 007166 11 RHSQSFLHCQMIFIKL--------YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNM 81 (615)
Q Consensus 11 ~~~~~lldcg~~f~~~--------~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~ 81 (615)
.+..+|+|||+.+... .-++| ||||||+|+||+||||+++.. +|+++||||.||+.++++++.|+++++.
T Consensus 22 ~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~-~~~~~v~aT~~T~~l~~~~l~d~~~~~~ 100 (427)
T COG1236 22 GGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRN-GFEGPVYATPPTAALLKVLLGDSLKLAE 100 (427)
T ss_pred CCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHh-ccCCceeeccCHHHHHHHHHHHHHhhhc
Confidence 4578999999865444 12269 999999999999999999986 6999999999999999999999997652
Q ss_pred hhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH--HHHHHHHhcceeecCCcEEEeCCcEEEEEe
Q 007166 82 EYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI--AHVKDCISKVQTLRFGEEACYNGILIIKAF 159 (615)
Q Consensus 82 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly--~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~ 159 (615)
... .++| +|++.+++++++++|+|++++.+ ++|++|
T Consensus 101 -------------------------------------~~~----~~~~~~~d~~~~~~~~~~~~yg~~~~v~~-~~v~~~ 138 (427)
T COG1236 101 -------------------------------------GPD----KPPYSEEDVERVPDLIRPLPYGEPVEVGG-VKVTFY 138 (427)
T ss_pred -------------------------------------CCC----CCCCchhHHHhhHhhEEEecCCCceEeee-EEEEEe
Confidence 001 3567 99999999999999999999976 999999
Q ss_pred ccccccceEEEEEEeCCeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCCCCCCccccCCcccCCCCchhhhhhc
Q 007166 160 SSGLDIGACNWIISGAKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSSLDSTEDIDQSSFSDDNNNWEELMNS 238 (615)
Q Consensus 160 ~AGHiLGsa~~~I~~~~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t~~~~~~~~~~~~~~~~~~~e~~~~~ 238 (615)
+|||++|||+|.++.++.+|+||||++.. +++..+++.... +|+||+|| ||+. + .+++
T Consensus 139 ~AGHilGsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~~~--~DvLI~Es--TYg~---~-------~~~~------- 197 (427)
T COG1236 139 NAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPPC--IDVLIVES--TYGD---R-------LHPN------- 197 (427)
T ss_pred cCCCccceeEEEEEeCCceEEEEeccCCCcCCCCCccccCCC--CcEEEEec--ccCC---c-------cCCC-------
Confidence 99999999999999999999999999975 677767765433 79999999 9982 1 2332
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHhCCCcccEEEECchHHHHHHHHHHhHH
Q 007166 239 LSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMECSSLKIPIYIISSVAEELLAYTNTIPE 318 (615)
Q Consensus 239 ~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~e 318 (615)
+++.++ .|.+.|.+++.+||+||||+||+||+||||.+|+.+|.++ ++|||++|++|..+..+++.+.+
T Consensus 198 -------r~~~e~--~f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~ 266 (427)
T COG1236 198 -------RDEVER--RFIESVKAALERGGTVLIPAFALGRAQELLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIG 266 (427)
T ss_pred -------HHHHHH--HHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchh
Confidence 244443 3889999999999999999999999999999999999877 79999999999999999999999
Q ss_pred hhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCcEEecC
Q 007166 319 WLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLEN 398 (615)
Q Consensus 319 wl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~d~~N~IIl~g 398 (615)
|++.......... |...+- ...........+|+||+|++||+.+|+++.+++.|+++++|.++++|
T Consensus 267 ~~~~~~~~~~~~~---~~~v~~-----------~~~~~~~~~~~~~~vi~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~ 332 (427)
T COG1236 267 LDLPDLLKVAESR---FRFVES-----------RRNSMREGIDKGPAVVLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPG 332 (427)
T ss_pred ccChHHHHHHHhh---cccccc-----------hhhhhhhhccCCceEEEEecccccCCcHHHHHHHHhcCCcceEEEcc
Confidence 9998877655432 322211 11111334678999999999999999999999999999999999999
Q ss_pred Ccchhcc-------------cCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCcccccccc----c--CC
Q 007166 399 EVDAELA-------------VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTHVSFSD----V--TS 459 (615)
Q Consensus 399 ~~~~~~~-------------l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~~~~l~----~--~~ 459 (615)
|+..+.. .+...+++++|+.+.||+|+|+.++.+||++..|++|+++||++..+..+. + .+
T Consensus 333 ~~~~~t~gr~~~~~~~~~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~~~~~~~~~~e~~~ 412 (427)
T COG1236 333 YQAEGTLGRVLLEGGTSVHIKGIEIKVKARVEELDFSAHADGDELLEFIKDISPPKVVLVHGEPEYGAALRARLLEELIG 412 (427)
T ss_pred cccCCcchhHHhcCCcEEeecceeecccceEEEeccccccCcHHHHHHHhcCCCceEEEEeCCchhhhHHHHHHHHhhCC
Confidence 9776531 123467899999999999999999999999999999999999998763343 2 34
Q ss_pred c-eeeecCCCcEEE
Q 007166 460 F-SVSHYSENETIH 472 (615)
Q Consensus 460 ~-~v~~p~~ge~i~ 472 (615)
. .++.|.+++.+.
T Consensus 413 ~~~~~~p~~~~~~~ 426 (427)
T COG1236 413 IRELELPANGEEYE 426 (427)
T ss_pred cceeecCCCccccC
Confidence 4 477888887654
No 8
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=5.6e-32 Score=295.29 Aligned_cols=343 Identities=13% Similarity=0.118 Sum_probs=236.2
Q ss_pred CCccccccccchhhh-----------------cccCcE-EEEEecCCccccchHHHhhcccCC-CceEEeeHHHHHHHHH
Q 007166 11 RHSQSFLHCQMIFIK-----------------LYARKI-LILKTGRSPMGMLGLPFLTRMEGF-SAKIYITEAAARIGQL 71 (615)
Q Consensus 11 ~~~~~lldcg~~f~~-----------------~~~~~I-aVllSHah~dH~gaLP~L~~~~gf-~g~Iy~T~pT~~l~~l 71 (615)
.+..+|+|||..|.+ ....+| +|||||+|.||+||||+|.+. + ..|||+|++|.++.+-
T Consensus 22 ~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~--~~~~~Vy~~~~t~~~l~~ 99 (422)
T TIGR00649 22 DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHT--VGFPPIYGTPLTIALIKS 99 (422)
T ss_pred CCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHh--CCCCeEEeCHHHHHHHHH
Confidence 466789999985532 115689 999999999999999999874 4 3699999999876553
Q ss_pred HHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeC
Q 007166 72 MMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN 151 (615)
Q Consensus 72 ll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~ 151 (615)
.+. .. +.. . ...+..+++++++++.
T Consensus 100 ~~~------~~------------------------------------~~~-----~--------~~~~~~~~~~~~~~ig 124 (422)
T TIGR00649 100 KIK------EN------------------------------------KLN-----V--------RTDLLEIHEGEPIETG 124 (422)
T ss_pred HHH------hc------------------------------------CCC-----C--------CCceEEeCCCCEEEeC
Confidence 221 00 000 0 0135678999999995
Q ss_pred CcEEEEEecccc-ccceEEEEEEeCCeeEEEecCCCCCCCCCC--CCCCC-----CCCCCCEEEeCCCCCCCCCccccCC
Q 007166 152 GILIIKAFSSGL-DIGACNWIISGAKGNIAYISGSNFASGHAM--DFDYR-----AIQGSDLILYSDLSSLDSTEDIDQS 223 (615)
Q Consensus 152 g~l~it~~~AGH-iLGsa~~~I~~~~~~IvYtgD~s~~~~~~~--~~d~~-----~l~~~DvLI~es~~t~~~~~~~~~~ 223 (615)
+++++++++++| +.||+++.++.++.+++||||+........ +.|.. .-+++|+||+|+ ||...+
T Consensus 125 ~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~Es--T~~~~~----- 197 (422)
T TIGR00649 125 ENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDS--TNVENP----- 197 (422)
T ss_pred CceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECC--CCCCCC-----
Confidence 569999999999 579999999998899999999886532222 22322 124689999999 775210
Q ss_pred cccCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHHHH-hcCCeEEEecCC--hhhHHHHHHHHHHHHHhCCCcccEE
Q 007166 224 SFSDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSV-KAGGSVLIPINR--VGVFLQLLEQIAIFMECSSLKIPIY 300 (615)
Q Consensus 224 ~~~~~~~~~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl-~~GG~VLIP~fa--~GR~qELl~~L~~~~~~~~l~vpIy 300 (615)
.... .+.+ +.+.+.+++ +.+|++++|+|+ ++|+|+++....++ ..||+
T Consensus 198 ----~~~~---------------~e~~----~~~~i~~~~~~~~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~ 248 (422)
T TIGR00649 198 ----GFTP---------------SEAK----VLEQLNDIFKNAKGRVIVATFASNIHRVQQLIQIARKQ------GRKFA 248 (422)
T ss_pred ----CCCC---------------CHHH----HHHHHHHHHHhCCCEEEEEEccccHHHHHHHHHHHHHh------CCEEE
Confidence 0000 1111 223444455 568999999999 89999999987664 36899
Q ss_pred EECchHHHHHHHHHHhHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhc-CCCCEEEEecCCCCCcchH
Q 007166 301 IISSVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMN-WQEPCIVFSPHWSLRLGPT 379 (615)
Q Consensus 301 ~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~-~~~P~VV~as~gmL~~G~s 379 (615)
+.+.+..++++.+..+ .|++. +... ++ ..+.... .++++||++|++ ++|+
T Consensus 249 v~g~~~~~~~~~~~~~-g~~~~--------~~~~-----~~------------~~~~i~~~~~~~~vii~tg~--~g~~- 299 (422)
T TIGR00649 249 VYGRSMEHLFGIARRL-GLIKN--------PHNN-----FI------------SLKEVNNSPDENYLIITTGS--QGEP- 299 (422)
T ss_pred EECccHHHHHHHHHHc-CCccC--------Cccc-----ee------------CHHHHhcCCcccEEEEEeCC--CCcH-
Confidence 9988888877766542 33321 0000 00 0112222 357899999887 7777
Q ss_pred HHHHHHHcCCC--------CCcEEecCCcchhcc-------cC-CCceeeeEEEE-eecccCCCHhhHHHHHHhcCCCEE
Q 007166 380 IHLLRRWSGDH--------NSLLVLENEVDAELA-------VL-PFKPISMKVLQ-CSFLSGKKLQKVQPLLKILQPKLV 442 (615)
Q Consensus 380 ~~ll~~~~~d~--------~N~IIl~g~~~~~~~-------l~-~~~~v~~~v~~-~~fs~haD~~~l~~~i~~l~P~~v 442 (615)
..++.+++.++ .++||++.---++.. +. ....+.+++.+ +.+|+||+.++|..+++.++|+.+
T Consensus 300 ~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ 379 (422)
T TIGR00649 300 YAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLDIRLNEVGARVIKRIHVSGHASQEDHKLLLRLLKPKYI 379 (422)
T ss_pred HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHHHHHHhcCCEEEeceEecCCCCHHHHHHHHHHhCCCEE
Confidence 77787888875 367877531111111 11 12345666655 789999999999999999999999
Q ss_pred EEeccCcccccccc----cCCc---eeeecCCCcEEEeCC
Q 007166 443 LFPEEWRTHVSFSD----VTSF---SVSHYSENETIHIPS 475 (615)
Q Consensus 443 ilvHG~~~~~~~l~----~~~~---~v~~p~~ge~i~l~~ 475 (615)
|.|||+......++ +.|+ +++.|.+|+++.+..
T Consensus 380 ipvHge~~~~~~~~~~a~~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 380 IPVHGEYRMLINHTKLAEEEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred EecCCcHHHHHHHHHHHHHcCCCcccEEEecCCcEEEecC
Confidence 99999987666554 3565 699999999998854
No 9
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.87 E-value=2.6e-22 Score=182.59 Aligned_cols=118 Identities=25% Similarity=0.401 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhCCC--cccEEEECchHHHHHHHHHHhHHhhhHHHHHHHhcCCC-CCcchhhhhcccccccCCcCCh
Q 007166 279 FLQLLEQIAIFMECSSL--KIPIYIISSVAEELLAYTNTIPEWLCKQRQEKLFSGDP-LFAHVKLIKEKKIHVFPAVHSP 355 (615)
Q Consensus 279 ~qELl~~L~~~~~~~~l--~vpIy~~s~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~-pF~~~~l~k~~~l~~~~~i~s~ 355 (615)
+|||+++|+++|+++.+ ++|||++||+|.+++++|+.+.|||++++++++...+. ||.+...+ +.+...
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 72 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFV--------KSVDES 72 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEE--------ESHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEe--------cccccc
Confidence 69999999999999886 49999999999999999999999999998877764433 67554332 222212
Q ss_pred hhhhcCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCcEEecCCcchhc
Q 007166 356 KLLMNWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAEL 404 (615)
Q Consensus 356 ~~~~~~~~P~VV~as~gmL~~G~s~~ll~~~~~d~~N~IIl~g~~~~~~ 404 (615)
..+....+|||||||+|||++|+|+++|++|++||+|+||||||++++.
T Consensus 73 ~~l~~~~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T 121 (126)
T PF10996_consen 73 KELNALSGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGT 121 (126)
T ss_dssp HHHHHSCSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTS
T ss_pred cccccCCCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCC
Confidence 2233456999999999999999999999999999999999999987754
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.83 E-value=8.4e-19 Score=193.41 Aligned_cols=348 Identities=14% Similarity=0.155 Sum_probs=214.5
Q ss_pred Cccccccccchhhh-----------------cccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIFIK-----------------LYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMM 73 (615)
Q Consensus 12 ~~~~lldcg~~f~~-----------------~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll 73 (615)
+.-+++|||+.|.+ ....+| +|||||+|.||+||||||..+..+ .|||+|+.|.+|.+.=+
T Consensus 31 ~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~-~piy~s~lt~~Li~~k~ 109 (555)
T COG0595 31 DDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLF-APIYASPLTAALIKEKL 109 (555)
T ss_pred CcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCc-CceecCHhhHHHHHHHH
Confidence 45578999986643 226789 999999999999999999986333 99999999999887555
Q ss_pred HHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCc
Q 007166 74 EELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGI 153 (615)
Q Consensus 74 ~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~ 153 (615)
.+.-.. .. ...++.++.+..+++ +.
T Consensus 110 ~~~~~~---------------------------------------~~---------------~~~~~ev~~~~~i~~-~~ 134 (555)
T COG0595 110 KEHGLF---------------------------------------KN---------------ENELHEVKPGSEIKF-GS 134 (555)
T ss_pred HHhccc---------------------------------------cc---------------cCceEEeCCCCeEEe-Cc
Confidence 421000 00 124578888999998 67
Q ss_pred EEEEEeccccc-cceEEEEEEeCCeeEEEecCCCCCCCCCC--CCCCCC-----CCCCCEEEeCCCCCCCCCccccCCcc
Q 007166 154 LIIKAFSSGLD-IGACNWIISGAKGNIAYISGSNFASGHAM--DFDYRA-----IQGSDLILYSDLSSLDSTEDIDQSSF 225 (615)
Q Consensus 154 l~it~~~AGHi-LGsa~~~I~~~~~~IvYtgD~s~~~~~~~--~~d~~~-----l~~~DvLI~es~~t~~~~~~~~~~~~ 225 (615)
+.++|++.=|. .+|+.+.|+++...|+||||+....+... +.|... -+++++||++| |-..
T Consensus 135 ~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lisds--Tna~--------- 203 (555)
T COG0595 135 FEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDS--TNAE--------- 203 (555)
T ss_pred EEEEEEeecccCccceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCC--cccC---------
Confidence 99999998885 57999999999999999999987533222 233321 24689999998 4331
Q ss_pred cCCCCchhhhhhccCCCcccHHHHHHHHHHHHHHHHHHhcCCeEEEecCCh--hhHHHHHHHHHHHHHhCCCcccEEEEC
Q 007166 226 SDDNNNWEELMNSLSNYDESVEEMEKLAFICSCAIDSVKAGGSVLIPINRV--GVFLQLLEQIAIFMECSSLKIPIYIIS 303 (615)
Q Consensus 226 ~~~~~~~e~~~~~~~~~~~~~~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~--GR~qELl~~L~~~~~~~~l~vpIy~~s 303 (615)
++.. + ..|++....+.+.+.++ .|.|++-+|+. +|.|.++..=.++ +-++.+.+
T Consensus 204 ---~pg~--------t----~SE~~v~~~l~~i~~~a---~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~G 259 (555)
T COG0595 204 ---NPGF--------T----PSESEVGENLEDIIRNA---KGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTG 259 (555)
T ss_pred ---CCCC--------C----CCHHHHHHHHHHHHHhC---CCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEc
Confidence 1110 0 02222223344444443 79999999997 7999988765432 46777777
Q ss_pred chHHHHHHHHHHhHHhhhHHHHHHHhcCCCCCcchhhhhcccccccCCcCChhhhhcCCCCEEEEecCCCCCcchHHHHH
Q 007166 304 SVAEELLAYTNTIPEWLCKQRQEKLFSGDPLFAHVKLIKEKKIHVFPAVHSPKLLMNWQEPCIVFSPHWSLRLGPTIHLL 383 (615)
Q Consensus 304 ~~a~~~~~~~~~~~ewl~~~~~~~~~~~~~pF~~~~l~k~~~l~~~~~i~s~~~~~~~~~P~VV~as~gmL~~G~s~~ll 383 (615)
--..+....+.....|-.. ...| +... +.......--+|+++...- =+..-+.
T Consensus 260 rSm~~~~~~a~~lg~~~~~---------~~~~-----i~~~-----------~~~~~~~~~~lii~TG~qg--ep~aaL~ 312 (555)
T COG0595 260 RSMERLIAIARRLGYLKLP---------DESF-----IEIR-----------EVKRYPDEEVLIICTGSQG--EPMAALS 312 (555)
T ss_pred HhHHHHHHHHhhcccccCc---------cccc-----cCHH-----------HhccccccceEEEEeCCCC--Cchhhhh
Confidence 6555555555433222211 1111 1110 1111111223555554321 2333344
Q ss_pred HHHcCC-------CCCcEEecCCcchh-cc-----cCCCceeeeEE-----EEeecccCCCHhhHHHHHHhcCCCEEEEe
Q 007166 384 RRWSGD-------HNSLLVLENEVDAE-LA-----VLPFKPISMKV-----LQCSFLSGKKLQKVQPLLKILQPKLVLFP 445 (615)
Q Consensus 384 ~~~~~d-------~~N~IIl~g~~~~~-~~-----l~~~~~v~~~v-----~~~~fs~haD~~~l~~~i~~l~P~~vilv 445 (615)
+.|.+. +..++||..-.-++ +. +......-+++ ..+--|+|+..+++..+++.++|+.++-+
T Consensus 313 r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPv 392 (555)
T COG0595 313 RMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPV 392 (555)
T ss_pred HhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceeccc
Confidence 444332 22345553221111 00 00001112222 23458999999999999999999999999
Q ss_pred ccCcccccccc----cCCc---eeeecCCCcEEEeCCCC
Q 007166 446 EEWRTHVSFSD----VTSF---SVSHYSENETIHIPSLK 477 (615)
Q Consensus 446 HG~~~~~~~l~----~~~~---~v~~p~~ge~i~l~~~~ 477 (615)
||+.......+ +.|. +++.+++|+.+.+....
T Consensus 393 HGeyr~~~~~a~la~~~G~~~~~i~i~~nG~v~~l~~~~ 431 (555)
T COG0595 393 HGEYRMLVAHAKLAEEEGIPQENIFILRNGDVLELEGGK 431 (555)
T ss_pred CCCcHHHHHHHHHHHhcCCCcccEEEecCceEEEecCCc
Confidence 99976544443 2232 58999999999997543
No 11
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=99.48 E-value=6.8e-14 Score=132.11 Aligned_cols=117 Identities=16% Similarity=0.263 Sum_probs=93.2
Q ss_pred EEEcHHHHhhhhhhhhhccCCcceEEEEEEEeeCC---------------eeeeecCCC---------------------
Q 007166 482 LEIAADIASKFQWRMLKQKKLNITRLKGRLFVNHG---------------KHQLLPENE--------------------- 525 (615)
Q Consensus 482 v~l~~~l~~~l~~~~~~~~~~~~a~v~g~l~~~~~---------------~~~l~~~~~--------------------- 525 (615)
|+|+++|+++|+|+.+ .+.+||||+|.|...+. ...+.+...
T Consensus 1 VkL~D~Lv~~Lkwq~v--~~~eVa~V~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 78 (161)
T PF13299_consen 1 VKLSDSLVSSLKWQKV--RDYEVAWVDGRLEGSEDPDAIENAEEEINSNTEFSLKPVEEEGTETENKASKKEQSPELDVL 78 (161)
T ss_pred CCCCHHHHhhCCceec--CCCEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence 5799999999999999 59999999999994210 111111000
Q ss_pred ----C--CCCCCCCCceEecCCChHHHHHHHHHCCCceEEe-eccccCCCCCceEEEEeCCCCcEEEEecceeEEEcC-C
Q 007166 526 ----P--GGSSQTRPFLHWGSPDPENLLAELSKMGINGSVE-RCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAA-D 597 (615)
Q Consensus 526 ----~--~~~~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~-~ 597 (615)
. ....+.|+++|+|+++|.+|++.|.+.|+++||. +|++ .|++.|.|+..+++.|.+||+ .|+ |
T Consensus 79 ~~~~~~~~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aEF~g~G~L----v~~~~V~VrK~~~G~i~ieG~----~~~~y 150 (161)
T PF13299_consen 79 PTLEALPSSERPGHQSLFIGDLRLSDLKQALQSAGIQAEFRGEGVL----VCNGGVAVRKSEDGRIVIEGC----LSEDY 150 (161)
T ss_pred cccccccccccCCCCceecCcccHHHHHHHHHHCCCceEEeeCCeE----EECCEEEEEEcCCCCEEEEec----CchhH
Confidence 0 0012246889999999999999999999999999 8887 467779999989999999999 999 9
Q ss_pred HHHHHHHHHHH
Q 007166 598 KNLASRIVKAM 608 (615)
Q Consensus 598 ~~~r~~l~~~~ 608 (615)
|++|++||+.+
T Consensus 151 y~VR~~iy~~~ 161 (161)
T PF13299_consen 151 YKVRKLIYEQL 161 (161)
T ss_pred HHHHHHHHhhC
Confidence 99999999863
No 12
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.33 E-value=2.7e-12 Score=129.65 Aligned_cols=140 Identities=13% Similarity=0.074 Sum_probs=95.4
Q ss_pred Cccccccccchhhhc--ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 007166 12 HSQSFLHCQMIFIKL--YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 88 (615)
Q Consensus 12 ~~~~lldcg~~f~~~--~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~~ 88 (615)
+.++|+|||...... ...+| +|||||.|.||+++|+.+....+-..+||++..|..+ .++.+..
T Consensus 36 ~~~iliD~G~~~~~~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~-----~~~~~~~-------- 102 (238)
T TIGR03307 36 GARTLIDAGLTDLAERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGC-----DDLFKHP-------- 102 (238)
T ss_pred CcEEEEECCChhHhhccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhH-----HHHhcCc--------
Confidence 567999999654332 26789 9999999999999998775433346789999987532 1111000
Q ss_pred CCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEeccccccceE
Q 007166 89 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 168 (615)
Q Consensus 89 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~AGHiLGsa 168 (615)
+. .. | ...+..++++.+ ++++|+++++.|..++.
T Consensus 103 ------------------------------~~-----~~-~---------~~~~~~~~~~~~-~~~~i~~~~~~H~~~~~ 136 (238)
T TIGR03307 103 ------------------------------GI-----LD-F---------SKPLEAFEPFDL-GGLRVTPLPLVHSKLTF 136 (238)
T ss_pred ------------------------------cc-----cc-c---------cccccCCceEEE-CCEEEEEEecCCCCcce
Confidence 00 00 0 012556788888 46999999999999999
Q ss_pred EEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCCCCCC
Q 007166 169 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSL 214 (615)
Q Consensus 169 ~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es~~t~ 214 (615)
.|.|+.++++++|+||......... +.-.-.++|+||+|+ ++
T Consensus 137 g~~i~~~~~~i~y~gDt~~~~~~~~--~~~~~~~~D~li~e~--~~ 178 (238)
T TIGR03307 137 GYLLETDGQRVAYLTDTAGLPPDTE--AFLKNHPLDVLILDC--SH 178 (238)
T ss_pred EEEEecCCcEEEEEecCCCCCHHHH--HHHhcCCCCEEEEeC--Cc
Confidence 9999999999999999642211000 100012699999998 55
No 13
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.24 E-value=7.8e-12 Score=121.41 Aligned_cols=137 Identities=16% Similarity=0.214 Sum_probs=94.7
Q ss_pred cccccccch-----hhhcc------cCcE-EEEEecCCccccchHHHhhccc-CCCceEEeeHHHHHHHHHHHHHHHHHH
Q 007166 14 QSFLHCQMI-----FIKLY------ARKI-LILKTGRSPMGMLGLPFLTRME-GFSAKIYITEAAARIGQLMMEELICMN 80 (615)
Q Consensus 14 ~~lldcg~~-----f~~~~------~~~I-aVllSHah~dH~gaLP~L~~~~-gf~g~Iy~T~pT~~l~~lll~D~~~~~ 80 (615)
++|+|||.. |.... .+.| +|||||+|.||+++||+|.... ...++||++..+.+..+-. .....
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~---~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY---KFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH---HHTHH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh---hcccc
Confidence 589999973 22111 1389 9999999999999988887642 1123899999888876633 00000
Q ss_pred HhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec
Q 007166 81 MEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160 (615)
Q Consensus 81 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~ 160 (615)
. |.. ..+ -..+..+.-++.+++ ++++|++++
T Consensus 79 ~---------------~~~-------------------~~~--------------~~~~~~~~~~~~~~~-~~~~i~~~~ 109 (194)
T PF12706_consen 79 D---------------LYP-------------------EED--------------NFDIIEISPGDEFEI-GDFRITPFP 109 (194)
T ss_dssp T---------------TCC-------------------TTS--------------GEEEEEECTTEEEEE-TTEEEEEEE
T ss_pred c---------------ccc-------------------ccc--------------ceeEEEeccCceEEe-ceEEEEEEe
Confidence 0 000 000 123455666678887 469999999
Q ss_pred cccccceEE----EEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCC
Q 007166 161 SGLDIGACN----WIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210 (615)
Q Consensus 161 AGHiLGsa~----~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es 210 (615)
+.|..+++. |.|+.++.+|+|+||... +...++++|++|+++
T Consensus 110 ~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~--------~~~~~~~~D~li~~~ 155 (194)
T PF12706_consen 110 ANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY--------DFEELKNIDLLILEC 155 (194)
T ss_dssp EESSSCCEEECCEEEEEETTEEEEEETSSSS--------CHHHHTTBSEEEEEB
T ss_pred ccccccccccCceEEEecCCcceEEeeccch--------hhhhhccCCEEEEeC
Confidence 999999998 999999999999999765 123347899999998
No 14
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.24 E-value=2.3e-11 Score=123.83 Aligned_cols=141 Identities=13% Similarity=0.081 Sum_probs=93.7
Q ss_pred Cccccccccchhhhc--ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 007166 12 HSQSFLHCQMIFIKL--YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYG 88 (615)
Q Consensus 12 ~~~~lldcg~~f~~~--~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~~ 88 (615)
+.++|+|||...... .+.+| +|||||.|.||+++|+.+....+-..+||++..+..+.. +.+..
T Consensus 46 ~~~iLiD~G~~~~~~~~~~~~i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~-----~~~~~-------- 112 (250)
T PRK11244 46 GARTLIDAGLPDLAERFPPGSLQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD-----LFKHP-------- 112 (250)
T ss_pred CCEEEEECCChHHhhcCCcccCCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHHH-----HhcCc--------
Confidence 567999999543332 26889 999999999999999887532233568999887753222 11000
Q ss_pred CCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEeccccccceE
Q 007166 89 AEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGAC 168 (615)
Q Consensus 89 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~AGHiLGsa 168 (615)
+ .. . + ...++-++++.+. +++|+++++.|..++.
T Consensus 113 ------------------------------~--~~---~-~---------~~~l~~~~~~~~~-~~~I~~~~~~H~~~s~ 146 (250)
T PRK11244 113 ------------------------------G--IL---D-F---------SHPLEPFEPFDLG-GLQVTPLPLNHSKLTF 146 (250)
T ss_pred ------------------------------c--cc---c-c---------ccccCCCCCeeEC-CEEEEEEeeCCCccee
Confidence 0 00 0 0 0123345677774 6899999999999999
Q ss_pred EEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCCCCCCC
Q 007166 169 NWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLD 215 (615)
Q Consensus 169 ~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es~~t~~ 215 (615)
.+.|+.++++++|+||........ .+.-.-.++|+||.|+ ++.
T Consensus 147 g~~i~~~~~~i~ysgDt~~~~~~~--~~~~~~~~~Dlli~e~--~~~ 189 (250)
T PRK11244 147 GYLLETAHSRVAYLTDTVGLPEDT--LKFLRNNQPDLLVLDC--SHP 189 (250)
T ss_pred EEEEecCCeEEEEEcCCCCCCHHH--HHHHhcCCCCEEEEeC--cCC
Confidence 999999999999999954221000 0000014799999998 553
No 15
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.06 E-value=1e-10 Score=85.38 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=36.1
Q ss_pred ceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCcc
Q 007166 410 KPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRT 450 (615)
Q Consensus 410 ~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~ 450 (615)
++++|+|..++||||||+++|.+|++.++|+++|+|||+++
T Consensus 3 i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 3 IPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 57899999999999999999999999999999999999863
No 16
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.05 E-value=3.3e-10 Score=118.73 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=94.3
Q ss_pred Cccccccccchhhhc------ccCcE-EEEEecCCccccchHHHhhccc---C--CCceEEeeHHHHHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIFIKL------YARKI-LILKTGRSPMGMLGLPFLTRME---G--FSAKIYITEAAARIGQLMMEELICM 79 (615)
Q Consensus 12 ~~~~lldcg~~f~~~------~~~~I-aVllSHah~dH~gaLP~L~~~~---g--f~g~Iy~T~pT~~l~~lll~D~~~~ 79 (615)
+.++|+|||..+... .+.+| +|||||.|.||++|||.|.... | -..+||+...+.+..+-++ .+
T Consensus 30 ~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~----~~ 105 (303)
T TIGR02649 30 SGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETAL----RI 105 (303)
T ss_pred CCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHH----Hh
Confidence 468999999644332 25889 9999999999999999765321 2 1358999998866543222 11
Q ss_pred HHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEe
Q 007166 80 NMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF 159 (615)
Q Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~ 159 (615)
.. .| +-| . -.+..+.-++.+.. +.++|+++
T Consensus 106 ~~--------------~~-----------------------------~~~-~-----~~~~~i~~~~~~~~-~~~~v~~~ 135 (303)
T TIGR02649 106 SG--------------SW-----------------------------TDY-P-----LEIVEIGAGEILDD-GLRKVTAY 135 (303)
T ss_pred cc--------------cc-----------------------------cCC-c-----eEEEEcCCCceEec-CCeEEEEE
Confidence 10 00 000 0 02334444566665 56899999
Q ss_pred ccccccceEEEEEEe--------------------------------------------------CCeeEEEecCCCCCC
Q 007166 160 SSGLDIGACNWIISG--------------------------------------------------AKGNIAYISGSNFAS 189 (615)
Q Consensus 160 ~AGHiLGsa~~~I~~--------------------------------------------------~~~~IvYtgD~s~~~ 189 (615)
+.-|-.-+..+.|+. .+.+|+|+||....
T Consensus 136 ~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~- 214 (303)
T TIGR02649 136 PLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPC- 214 (303)
T ss_pred EccCccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCCh-
Confidence 999988888899875 35789999995431
Q ss_pred CCCCCCCCCCCCCCCEEEeCCCCCCC
Q 007166 190 GHAMDFDYRAIQGSDLILYSDLSSLD 215 (615)
Q Consensus 190 ~~~~~~d~~~l~~~DvLI~es~~t~~ 215 (615)
+.-.....++|+||+|+ ||.
T Consensus 215 ----~~~~~~~~~adlLi~Ea--t~~ 234 (303)
T TIGR02649 215 ----DAALDLAKGVDVMVHEA--TLD 234 (303)
T ss_pred ----HHHHHHhcCCCEEEEec--cCC
Confidence 11112357999999999 664
No 17
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.00 E-value=7.9e-10 Score=115.44 Aligned_cols=143 Identities=16% Similarity=0.127 Sum_probs=93.8
Q ss_pred Cccccccccchhhhc------ccCcE-EEEEecCCccccchHHHhhcccCC-----CceEEeeHHHHHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIFIKL------YARKI-LILKTGRSPMGMLGLPFLTRMEGF-----SAKIYITEAAARIGQLMMEELICM 79 (615)
Q Consensus 12 ~~~~lldcg~~f~~~------~~~~I-aVllSHah~dH~gaLP~L~~~~gf-----~g~Iy~T~pT~~l~~lll~D~~~~ 79 (615)
+.++|+|||.-.... .+.+| +|||||.|.||++|||.+.....+ ..+||+...+.+..+ ...+.
T Consensus 27 ~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~----~~~~~ 102 (299)
T TIGR02651 27 GELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIE----TSLRV 102 (299)
T ss_pred CeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHH----HHHHH
Confidence 578999999643321 25689 999999999999999988754333 347999988865432 22211
Q ss_pred HHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCc-EEEeCCcEEEEE
Q 007166 80 NMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGE-EACYNGILIIKA 158 (615)
Q Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q-~~~l~g~l~it~ 158 (615)
.. .. ..|. -.+..+.-++ .+.. ++++|++
T Consensus 103 ~~--------------------------------------~~-----~~~~------~~~~~~~~~~~~~~~-~~~~v~~ 132 (299)
T TIGR02651 103 SY--------------------------------------TY-----LNYP------IKIHEIEEGGLVFED-DGFKVEA 132 (299)
T ss_pred cc--------------------------------------cC-----CCce------EEEEEccCCCceEec-CCEEEEE
Confidence 10 00 0000 0223344454 3555 5699999
Q ss_pred eccccccceEEEEEEeC--------------------------------------------------CeeEEEecCCCCC
Q 007166 159 FSSGLDIGACNWIISGA--------------------------------------------------KGNIAYISGSNFA 188 (615)
Q Consensus 159 ~~AGHiLGsa~~~I~~~--------------------------------------------------~~~IvYtgD~s~~ 188 (615)
++.=|...+..+.|+.+ +.+++|+||....
T Consensus 133 ~~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~ 212 (299)
T TIGR02651 133 FPLDHSIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPC 212 (299)
T ss_pred EEcCCCCceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCCh
Confidence 99999888889998854 4589999995432
Q ss_pred CCCCCCCCCCCCCCCCEEEeCCCCCCC
Q 007166 189 SGHAMDFDYRAIQGSDLILYSDLSSLD 215 (615)
Q Consensus 189 ~~~~~~~d~~~l~~~DvLI~es~~t~~ 215 (615)
.. -...++++|+||+|+ ||.
T Consensus 213 ~~-----~~~~~~~~dlLi~E~--~~~ 232 (299)
T TIGR02651 213 EE-----VIEFAKNADLLIHEA--TFL 232 (299)
T ss_pred HH-----HHHHHcCCCEEEEEC--CCC
Confidence 10 012357899999998 664
No 18
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.99 E-value=1.2e-09 Score=114.17 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=93.2
Q ss_pred ccccccccchhhh-------------cccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHH
Q 007166 13 SQSFLHCQMIFIK-------------LYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELIC 78 (615)
Q Consensus 13 ~~~lldcg~~f~~-------------~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~ 78 (615)
..+|+|||..+.. ....+| +|||||.|.||++|||.|.+ +..-+||+++.|.+-.+ +.
T Consensus 49 ~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~~~L~----~~-- 120 (302)
T TIGR02108 49 RWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVLQDLS----DN-- 120 (302)
T ss_pred EEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHHHHHH----hC--
Confidence 3689999965422 226789 99999999999999999965 46789999999866532 10
Q ss_pred HHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeC----CcE
Q 007166 79 MNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN----GIL 154 (615)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~----g~l 154 (615)
..| + .. +.+ .-+.+.+.-++++.+. +++
T Consensus 121 --~~~-----------------------------------~-~~----~~~------~~~~~~i~~~~~~~~~~~~~~g~ 152 (302)
T TIGR02108 121 --PIF-----------------------------------N-VL----DHW------NVRRQPIALNEKFEFRIVARPGL 152 (302)
T ss_pred --CCc-----------------------------------c-cc----chh------hccceEecCCCcEEecccccCCE
Confidence 000 0 00 000 0112345556777664 249
Q ss_pred EEEEeccc--------c------ccceEEEEEEeC--CeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCC
Q 007166 155 IIKAFSSG--------L------DIGACNWIISGA--KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210 (615)
Q Consensus 155 ~it~~~AG--------H------iLGsa~~~I~~~--~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es 210 (615)
+|++++.= | -..+..+.|+.+ +++++|++|....+ +.-...++++|+||+|+
T Consensus 153 ~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~----~~~~~~l~~~d~liida 220 (302)
T TIGR02108 153 EFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEIT----DDLKARMAGADLVFFDG 220 (302)
T ss_pred EEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCC----HHHHHHHhCCCEEEEeC
Confidence 99999987 4 246789999988 89999999954221 11112367899999998
No 19
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.96 E-value=1.1e-09 Score=114.49 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=89.9
Q ss_pred cccccccchhhhc-------------ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHH
Q 007166 14 QSFLHCQMIFIKL-------------YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICM 79 (615)
Q Consensus 14 ~~lldcg~~f~~~-------------~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~ 79 (615)
++|+|||..+... ...+| +|||||.|.||+++||+|.+ +..-+||++..|.+..+-... +
T Consensus 51 ~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~~~~l~~~~~-~--- 124 (302)
T PRK05184 51 WVLLNASPDIRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAVLEDLSTGFP-I--- 124 (302)
T ss_pred EEEEECChhHHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHHHHHHHhcCC-c---
Confidence 5899999654331 13479 99999999999999999954 567899999997643320000 0
Q ss_pred HHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeC--CcEEEE
Q 007166 80 NMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN--GILIIK 157 (615)
Q Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~--g~l~it 157 (615)
.+ .. .-| ..+ .+..+.-++++++. ++++|+
T Consensus 125 --------f~-------------------------------~~----~~~----~~~-~~~~i~~~~~~~i~~~~~~~Vt 156 (302)
T PRK05184 125 --------FN-------------------------------VL----DHY----GGV-QRRPIALDGPFAVPGLPGLRFT 156 (302)
T ss_pred --------cc-------------------------------cc----ccc----cce-eeEEecCCCceEecCCCCcEEE
Confidence 00 00 000 001 22344445667774 368999
Q ss_pred Eecccc-------------ccceEEEEEE--eCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCC
Q 007166 158 AFSSGL-------------DIGACNWIIS--GAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210 (615)
Q Consensus 158 ~~~AGH-------------iLGsa~~~I~--~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es 210 (615)
+++.-| -..+..++|+ .++++++|++|...... . -...++++|+||+|+
T Consensus 157 ~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~---~-~~~~~~gaDlli~da 220 (302)
T PRK05184 157 AFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTD---A-LRARLAGADCVLFDG 220 (302)
T ss_pred EEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCH---H-HHHHHhcCCEEEEeC
Confidence 999864 3568889995 67889999988542210 0 012367899999997
No 20
>PRK02113 putative hydrolase; Provisional
Probab=98.93 E-value=1.1e-09 Score=111.65 Aligned_cols=141 Identities=18% Similarity=0.157 Sum_probs=90.3
Q ss_pred Cccccccccchhhh----cccCcE-EEEEecCCccccchHHHhhcc-cCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhh
Q 007166 12 HSQSFLHCQMIFIK----LYARKI-LILKTGRSPMGMLGLPFLTRM-EGFSAKIYITEAAARIGQLMMEELICMNMEYRQ 85 (615)
Q Consensus 12 ~~~~lldcg~~f~~----~~~~~I-aVllSHah~dH~gaLP~L~~~-~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~ 85 (615)
+.++|+|||..+.. ....+| +|||||.|.||+++||.+... .+...+||+++.|.+..+-.+ ...
T Consensus 44 ~~~iLiD~G~g~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~----~~~----- 114 (252)
T PRK02113 44 GARILIDCGPDFREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRM----PYC----- 114 (252)
T ss_pred CeEEEEECCchHHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhC----Cee-----
Confidence 56799999965433 236789 999999999999999988532 124678999987644321100 000
Q ss_pred hcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEeccccc-
Q 007166 86 FYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLD- 164 (615)
Q Consensus 86 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~AGHi- 164 (615)
+ .. ..|.++. .-+++.++.++++++. +++|++++.-|.
T Consensus 115 -~--------------------------------~~-----~~~~~~~--~~~~~~~~~g~~~~~~-~~~i~~~~~~H~~ 153 (252)
T PRK02113 115 -F--------------------------------VE-----HSYPGVP--NIPLREIEPDRPFLVN-HTEVTPLRVMHGK 153 (252)
T ss_pred -e--------------------------------cc-----CCCCCCc--ceeeEEcCCCCCEEEC-CeEEEEEEecCCC
Confidence 0 00 0011110 0245677778888885 589999999995
Q ss_pred cceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCC
Q 007166 165 IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210 (615)
Q Consensus 165 LGsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es 210 (615)
.-+..|.+ ++++|+||...... .-...++++|+||+|+
T Consensus 154 ~~~~gy~i----~~i~y~~Dt~~~~~----~~~~~~~~~DlLi~e~ 191 (252)
T PRK02113 154 LPILGYRI----GKMAYITDMLTMPE----EEYEQLQGIDVLVMNA 191 (252)
T ss_pred ccEEEEEe----CCEEEccCCCCCCH----HHHHHhcCCCEEEEhh
Confidence 33566777 57999999642211 0112356899999997
No 21
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.92 E-value=4.4e-08 Score=105.66 Aligned_cols=120 Identities=12% Similarity=0.140 Sum_probs=87.4
Q ss_pred cCcE-EEEEecCCccccchHHHhhcccCC-CceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhh
Q 007166 28 ARKI-LILKTGRSPMGMLGLPFLTRMEGF-SAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELEL 105 (615)
Q Consensus 28 ~~~I-aVllSHah~dH~gaLP~L~~~~gf-~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 105 (615)
..+. +=|+||+|-||-.||- ..| +|++||..-|+.+...-|. +
T Consensus 110 ~~~~s~yFLsHFHSDHy~GL~-----~sW~~p~lYCS~ita~Lv~~~~~----v-------------------------- 154 (481)
T KOG1361|consen 110 IEGCSAYFLSHFHSDHYIGLT-----KSWSHPPLYCSPITARLVPLKVS----V-------------------------- 154 (481)
T ss_pred ccccceeeeeccccccccccc-----ccccCCcccccccchhhhhhhcc----c--------------------------
Confidence 5678 9999999999966652 245 5679999999876554332 0
Q ss_pred chhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEeccccccceEEEEEEeC-CeeEEEecC
Q 007166 106 LPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSGLDIGACNWIISGA-KGNIAYISG 184 (615)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~AGHiLGsa~~~I~~~-~~~IvYtgD 184 (615)
.++.++.++-+|++.+++ +.+|.++|-|+.||+|+..+.. +++++||||
T Consensus 155 -----------------------------~~~~i~~l~l~~~~~i~~-~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGD 204 (481)
T KOG1361|consen 155 -----------------------------TKQSIQALDLNQPLEIPG-IQVTLLDANHCPGAVMFLFELSFGPCILHTGD 204 (481)
T ss_pred -----------------------------ChhhceeecCCCceeecc-eEEEEeccccCCCceEEEeecCCCceEEecCC
Confidence 023567889999999986 8999999999999999999875 569999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEeCCCCCC
Q 007166 185 SNFASGHAMDFDYRAIQGSDLILYSDLSSL 214 (615)
Q Consensus 185 ~s~~~~~~~~~d~~~l~~~DvLI~es~~t~ 214 (615)
|..........-...-..+|.+.++. ||
T Consensus 205 FR~s~~m~~~p~~~~~~~i~~lyLDt--Ty 232 (481)
T KOG1361|consen 205 FRASADMSKEPALTLEQTIDILYLDT--TY 232 (481)
T ss_pred cccChhhhhChHHhcCCccceEEEee--cc
Confidence 88652211111000114678888886 55
No 22
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=98.90 E-value=2.1e-09 Score=102.62 Aligned_cols=122 Identities=20% Similarity=0.174 Sum_probs=82.3
Q ss_pred Cccccccccchh-------hhcc-cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHh
Q 007166 12 HSQSFLHCQMIF-------IKLY-ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNME 82 (615)
Q Consensus 12 ~~~~lldcg~~f-------~~~~-~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~ 82 (615)
+..+|+|||... +... ..+| +|++||.|.||+||+|.+.+. ++.+||++..+.+..+-.... ..
T Consensus 15 ~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~~~~~~~~~----~~- 87 (183)
T smart00849 15 GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAELLKDLLKL----GG- 87 (183)
T ss_pred CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhHHHhccchh----cc-
Confidence 678999999432 1121 6789 999999999999999999985 678999988887533211111 00
Q ss_pred hhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec-c
Q 007166 83 YRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-S 161 (615)
Q Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~-A 161 (615)
. . .........+..+..++++.+. +.++++++ .
T Consensus 88 -------~----------------------------~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 121 (183)
T smart00849 88 -------A----------------------------L----------GAEAPPPPPDRTLKDGEELDLG-GLELEVIHTP 121 (183)
T ss_pred -------c----------------------------c----------CcCCCCCccceecCCCCEEEeC-CceEEEEECC
Confidence 0 0 0000011245677888999986 34555444 4
Q ss_pred ccccceEEEEEEeCCeeEEEecCCCCC
Q 007166 162 GLDIGACNWIISGAKGNIAYISGSNFA 188 (615)
Q Consensus 162 GHiLGsa~~~I~~~~~~IvYtgD~s~~ 188 (615)
||..|++.+.++. .+++|+||....
T Consensus 122 ~h~~~~~~~~~~~--~~vl~~gD~~~~ 146 (183)
T smart00849 122 GHTPGSIVLYLPE--GKILFTGDLLFS 146 (183)
T ss_pred CCCCCcEEEEECC--CCEEEECCeeec
Confidence 9999999987764 899999996543
No 23
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.80 E-value=7e-08 Score=98.28 Aligned_cols=152 Identities=9% Similarity=-0.054 Sum_probs=95.6
Q ss_pred cccccc-CCcccccc-ccch---hhhcccCcE-EEEEecCCccccchHHHhhcccCC-----Cc-eEEeeHHHHHHHHHH
Q 007166 5 IAHWTF-RHSQSFLH-CQMI---FIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGF-----SA-KIYITEAAARIGQLM 72 (615)
Q Consensus 5 ~~~~~~-~~~~~lld-cg~~---f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf-----~g-~Iy~T~pT~~l~~ll 72 (615)
+-+|-+ ..-+|||| .|.- ....-...+ .|||||+|.||+|+||.++-..+. +. .||.=..+++ +
T Consensus 10 ~~t~~~~~~~~ilfD~ag~g~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~----~ 85 (277)
T TIGR02650 10 FFSTIIYSPEEIIFDAAEEGSSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNA----A 85 (277)
T ss_pred heEEEEECchhheehhhcccchhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhH----H
Confidence 344544 46889999 7742 344447889 999999999999999655431111 22 4887666555 4
Q ss_pred HHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeC-
Q 007166 73 MEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYN- 151 (615)
Q Consensus 73 l~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~- 151 (615)
.+++.++.+.+++ . . ... -.+..++-++.+-+.
T Consensus 86 ve~~~~~~~~~~~----~------------~---------------~~~---------------~~~~~~~~~e~~~~r~ 119 (277)
T TIGR02650 86 EEETSEFIKAANE----D------------L---------------FFF---------------FNHHLEEEDERFFLDA 119 (277)
T ss_pred HHHHHHHHHHhhh----h------------h---------------ccC---------------cccCCCCCCcEEEeec
Confidence 4555444432110 0 0 000 112456777777776
Q ss_pred C--cEEEEEecccccc------ceEEEEEE-----------------------------eCCeeEEEecCCCCCCCCCCC
Q 007166 152 G--ILIIKAFSSGLDI------GACNWIIS-----------------------------GAKGNIAYISGSNFASGHAMD 194 (615)
Q Consensus 152 g--~l~it~~~AGHiL------Gsa~~~I~-----------------------------~~~~~IvYtgD~s~~~~~~~~ 194 (615)
+ .+.+.+++..|.. |-..|... ....+|+|+||....
T Consensus 120 ~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~------ 193 (277)
T TIGR02650 120 AGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAA------ 193 (277)
T ss_pred CCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCC------
Confidence 3 4899999999986 66666432 113689999996432
Q ss_pred CCCCCCCCCCEEEeCCCCCCC
Q 007166 195 FDYRAIQGSDLILYSDLSSLD 215 (615)
Q Consensus 195 ~d~~~l~~~DvLI~es~~t~~ 215 (615)
+.....+||+||.|+ ||.
T Consensus 194 -~~~~a~~adlLIhEa--Tf~ 211 (277)
T TIGR02650 194 -DDEEEEGGEELIHEC--CFF 211 (277)
T ss_pred -ChHHhcCCCEEEEec--ccc
Confidence 223356899999999 775
No 24
>PRK00055 ribonuclease Z; Reviewed
Probab=98.70 E-value=2.4e-09 Score=109.80 Aligned_cols=60 Identities=20% Similarity=0.149 Sum_probs=44.6
Q ss_pred Cccccccccchhhhc------ccCcE-EEEEecCCccccchHHHhhcccC-----CCceEEeeHHHHHHHHH
Q 007166 12 HSQSFLHCQMIFIKL------YARKI-LILKTGRSPMGMLGLPFLTRMEG-----FSAKIYITEAAARIGQL 71 (615)
Q Consensus 12 ~~~~lldcg~~f~~~------~~~~I-aVllSHah~dH~gaLP~L~~~~g-----f~g~Iy~T~pT~~l~~l 71 (615)
+.++|+|||..+... .+.+| +|||||.|.||++|||.|..... -..+||+...+.++.+-
T Consensus 29 ~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~ 100 (270)
T PRK00055 29 GELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVET 100 (270)
T ss_pred CcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHH
Confidence 578999999643321 25789 99999999999999998874321 23479998888766543
No 25
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.69 E-value=3.9e-08 Score=106.88 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=79.3
Q ss_pred Cccccccccc-----hhhhc-----ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQM-----IFIKL-----YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMN 80 (615)
Q Consensus 12 ~~~~lldcg~-----~f~~~-----~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~ 80 (615)
+..+|+|||. .+.+. .+.+| +|++||.|.||+|++|.|.+.. -..+||+|+.+.++.+ ...
T Consensus 41 ~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~-p~a~V~~~~~~~~~l~----~~~--- 112 (394)
T PRK11921 41 EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEI-PDTPIYCTKNGAKSLK----GHY--- 112 (394)
T ss_pred CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHC-CCCEEEECHHHHHHHH----HHh---
Confidence 4678999984 23321 24689 9999999999999999998752 1689999998765321 100
Q ss_pred HhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec
Q 007166 81 MEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160 (615)
Q Consensus 81 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~ 160 (615)
..+ | +++.++.++++++ |+.+++++.
T Consensus 113 --------------------------------------~~~---~------------~~~~v~~g~~l~l-G~~~l~~i~ 138 (394)
T PRK11921 113 --------------------------------------HQD---W------------NFVVVKTGDRLEI-GSNELIFIE 138 (394)
T ss_pred --------------------------------------CCC---C------------ceEEeCCCCEEee-CCeEEEEEe
Confidence 000 1 2356788899998 456788774
Q ss_pred --cccccceEEEEEEeCCeeEEEecCCC
Q 007166 161 --SGLDIGACNWIISGAKGNIAYISGSN 186 (615)
Q Consensus 161 --AGHiLGsa~~~I~~~~~~IvYtgD~s 186 (615)
-+|..|++.+.++ +.+++|+||.-
T Consensus 139 tP~~H~p~~~~~y~~--~~~vLFsgD~f 164 (394)
T PRK11921 139 APMLHWPDSMFTYLT--GDNILFSNDAF 164 (394)
T ss_pred CCCCCCCCceEEEEc--CCCEEEecCcc
Confidence 4499999988774 57899999943
No 26
>PRK02126 ribonuclease Z; Provisional
Probab=98.64 E-value=1.9e-07 Score=98.91 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=47.6
Q ss_pred Cccccccccchhhh---cccCcE-EEEEecCCccccchHHHhhccc-CC--CceEEeeHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIFIK---LYARKI-LILKTGRSPMGMLGLPFLTRME-GF--SAKIYITEAAARIGQLMM 73 (615)
Q Consensus 12 ~~~~lldcg~~f~~---~~~~~I-aVllSHah~dH~gaLP~L~~~~-gf--~g~Iy~T~pT~~l~~lll 73 (615)
+..+|+|||. +.. ....+| +||+||.|.||++|+|.|.+.. +- ..+||+.+.|.++.+-.+
T Consensus 27 ~~~iLiD~G~-~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~~ 94 (334)
T PRK02126 27 RRALLFDLGD-LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHKL 94 (334)
T ss_pred CeEEEEcCCC-HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHHh
Confidence 5779999996 322 236789 9999999999999999998642 10 248999999998776554
No 27
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.62 E-value=1.8e-07 Score=93.56 Aligned_cols=133 Identities=12% Similarity=0.072 Sum_probs=87.8
Q ss_pred ccCCccccccccc---hh--hhcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHh
Q 007166 9 TFRHSQSFLHCQM---IF--IKLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNME 82 (615)
Q Consensus 9 ~~~~~~~lldcg~---~f--~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~ 82 (615)
...+.++|+||+. .. ......++ +||+||.|.||+++++.+..+ ...+||++.-+.+. + +.
T Consensus 14 ~~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v~~~~~~~~~--------~---~~ 80 (228)
T PRK00685 14 ETGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATVIANAELANY--------L---SE 80 (228)
T ss_pred EECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEEEEeHHHHHH--------H---Hh
Confidence 4456789999753 11 11113379 999999999999999887653 46899998643211 1 00
Q ss_pred hhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEeccc
Q 007166 83 YRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG 162 (615)
Q Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~AG 162 (615)
.. +.++..++.++++++. +++|+++++-
T Consensus 81 -------------------------------------~~--------------~~~~~~~~~~~~~~~~-~~~i~~~p~~ 108 (228)
T PRK00685 81 -------------------------------------KG--------------VEKTHPMNIGGTVEFD-GGKVKLTPAL 108 (228)
T ss_pred -------------------------------------cC--------------CCceeeccCCCcEEEC-CEEEEEEEEE
Confidence 00 1134567778888884 6899999998
Q ss_pred cccc------------eEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeC
Q 007166 163 LDIG------------ACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 209 (615)
Q Consensus 163 HiLG------------sa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~e 209 (615)
|... ...|.|+.++.+++|+||........ ......++|++++.
T Consensus 109 H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~---~~~~~~~~D~~~~~ 164 (228)
T PRK00685 109 HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMK---LIGELHKPDVALLP 164 (228)
T ss_pred cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHH---HHHHhhCCCEEEEe
Confidence 8654 47899999999999999955321000 00112357998875
No 28
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=98.56 E-value=4.4e-07 Score=86.42 Aligned_cols=125 Identities=16% Similarity=0.100 Sum_probs=74.3
Q ss_pred CCccccccccchh----------hhcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHH
Q 007166 11 RHSQSFLHCQMIF----------IKLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICM 79 (615)
Q Consensus 11 ~~~~~lldcg~~f----------~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~ 79 (615)
.+..+|+|||... .+....+| +||+||+|.||+|+++++.+. +-...+++..................
T Consensus 14 ~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (194)
T PF00753_consen 14 GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEA-GPVVIIYSSADAAKAIRPPDRDSASR 92 (194)
T ss_dssp TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH-TTEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccc-cceeeeeccccccccccccccccccc
Confidence 4788999999632 22337899 999999999999999999986 22344444444443333333222111
Q ss_pred HHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEe
Q 007166 80 NMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF 159 (615)
Q Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~ 159 (615)
.. .............+.....+. .....
T Consensus 93 ~~---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~ 120 (194)
T PF00753_consen 93 RG---------------------------------------------------PAVPPPPIIDEDEDDLEIGGD-RILFI 120 (194)
T ss_dssp HH---------------------------------------------------HHHESEEEEEETTTEEEEETT-EEEEE
T ss_pred cc---------------------------------------------------cccccccceeeeccccccccc-ccccc
Confidence 00 000011123334444444333 44445
Q ss_pred ccccccceEEEEEEeCCeeEEEecCCCCC
Q 007166 160 SSGLDIGACNWIISGAKGNIAYISGSNFA 188 (615)
Q Consensus 160 ~AGHiLGsa~~~I~~~~~~IvYtgD~s~~ 188 (615)
..+|.-|++.+.+...+++++||||....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~vlftGD~~~~ 149 (194)
T PF00753_consen 121 IPGPGHGSDSLIIYLPGGKVLFTGDLLFS 149 (194)
T ss_dssp EESSSSSTTEEEEEETTTTEEEEETTSCT
T ss_pred eeccccCCcceEEEeCCCcEEEeeeEecc
Confidence 55566666666666789999999997654
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.50 E-value=3e-07 Score=102.07 Aligned_cols=114 Identities=10% Similarity=-0.044 Sum_probs=81.8
Q ss_pred Cccccccccch-----hhhcc-----cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMI-----FIKLY-----ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMN 80 (615)
Q Consensus 12 ~~~~lldcg~~-----f~~~~-----~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~ 80 (615)
+..+|+|+|.. |.+.. +.+| +|++||.|.||+|++|.|.+++ -..+||+|+++.++.. ...
T Consensus 43 ~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~~~~~~l~----~~~--- 114 (479)
T PRK05452 43 EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTANAIDSIN----GHH--- 114 (479)
T ss_pred CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECHHHHHHHH----Hhh---
Confidence 46789999842 22221 4689 9999999999999999999752 2689999999875321 000
Q ss_pred HhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec
Q 007166 81 MEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS 160 (615)
Q Consensus 81 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~ 160 (615)
.. +. .+++.++.++++++.++.+++++.
T Consensus 115 --------------------------------------~~------~~--------~~~~~v~~G~~l~lG~~~~l~~i~ 142 (479)
T PRK05452 115 --------------------------------------HH------PE--------WNFNVVKTGDTLDIGNGKQLIFVE 142 (479)
T ss_pred --------------------------------------cC------Cc--------CeEEEeCCCCEEecCCCcEEEEEE
Confidence 00 00 134678999999996445676666
Q ss_pred c--ccccceEEEEEEeCCeeEEEecCCCC
Q 007166 161 S--GLDIGACNWIISGAKGNIAYISGSNF 187 (615)
Q Consensus 161 A--GHiLGsa~~~I~~~~~~IvYtgD~s~ 187 (615)
+ +|..|+.++.++ +.+++||||.-+
T Consensus 143 tP~~H~pgs~~~y~~--~~~vLFsgD~fG 169 (479)
T PRK05452 143 TPMLHWPDSMMTYLT--GDAVLFSNDAFG 169 (479)
T ss_pred CCCCCCCCceEEEEc--CCCEEEeccccc
Confidence 6 599999998875 679999999543
No 30
>PRK04286 hypothetical protein; Provisional
Probab=98.45 E-value=3.3e-07 Score=95.81 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=84.0
Q ss_pred Cccccccccchhh-----------------------hcccCcE-EEEEecCCccccchHHHhhcccC---CCceEEeeHH
Q 007166 12 HSQSFLHCQMIFI-----------------------KLYARKI-LILKTGRSPMGMLGLPFLTRMEG---FSAKIYITEA 64 (615)
Q Consensus 12 ~~~~lldcg~~f~-----------------------~~~~~~I-aVllSHah~dH~gaLP~L~~~~g---f~g~Iy~T~p 64 (615)
+.+||+|+|..+. .....+| +|||||.|.||++++..+.=..+ +.-+||++.+
T Consensus 24 ~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~ 103 (298)
T PRK04286 24 DVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKI 103 (298)
T ss_pred CeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCce
Confidence 6789999995431 1226789 99999999999987654410012 2368888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchH-HHHHHHHhcceeec
Q 007166 65 AARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCI-AHVKDCISKVQTLR 143 (615)
Q Consensus 65 T~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly-~dv~~~~~~i~~v~ 143 (615)
|..-. ..+.+.....+ + .+.| ..++.. .....+.
T Consensus 104 ~~~~~---~~~~~~~~~~~--------------~---------------------------~~~~~~~v~~~-~~~~~~~ 138 (298)
T PRK04286 104 VLIKD---PTENINWSQRR--------------R---------------------------APRFLKAVKDI-AKKIEYA 138 (298)
T ss_pred ecccC---HHHHcCHHHHh--------------h---------------------------HHhHHHHHHhc-CCceEEC
Confidence 75211 11100000000 0 0111 222221 1123344
Q ss_pred CCcEEEeCCcEEEEEe-ccccc-----cce-EEEEEEeCCeeEEEecCCCC-CCCCCCCCCCCCC--CCCCEEEeCC
Q 007166 144 FGEEACYNGILIIKAF-SSGLD-----IGA-CNWIISGAKGNIAYISGSNF-ASGHAMDFDYRAI--QGSDLILYSD 210 (615)
Q Consensus 144 Y~q~~~l~g~l~it~~-~AGHi-----LGs-a~~~I~~~~~~IvYtgD~s~-~~~~~~~~d~~~l--~~~DvLI~es 210 (615)
-++++.+ |+++|++. +..|- .|- ..+.|+.++.+++|+||... ....... .+ .++|+||+++
T Consensus 139 ~g~~~~i-g~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~----~l~~~d~dlLi~~~ 210 (298)
T PRK04286 139 DGKTFRF-GGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVE----FILEKKPDVVIIGG 210 (298)
T ss_pred CCCEEEE-CCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHH----HHhcCCCCEEEeCC
Confidence 5678888 46889966 66773 332 23466788999999999762 1110000 12 2889999986
No 31
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.42 E-value=1.1e-06 Score=89.43 Aligned_cols=103 Identities=14% Similarity=0.195 Sum_probs=73.1
Q ss_pred Cccccccccch-----hhhcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhh
Q 007166 12 HSQSFLHCQMI-----FIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQ 85 (615)
Q Consensus 12 ~~~~lldcg~~-----f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~ 85 (615)
+..+++|+|.. +.+....++ +||+||.|.||+||++.+.+. |..+||++..+ .+.
T Consensus 20 ~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~--~~~~V~~~~~~------------~~~----- 80 (248)
T TIGR03413 20 GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEA--FPAPVYGPAEE------------RIP----- 80 (248)
T ss_pred CCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHH--CCCeEEecccc------------cCC-----
Confidence 35789999952 233334479 999999999999999999876 44899987653 000
Q ss_pred hcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec-cccc
Q 007166 86 FYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLD 164 (615)
Q Consensus 86 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~-AGHi 164 (615)
.. .+.+.-++.+.+. +.+++++. .||.
T Consensus 81 ---------------------------------~~------------------~~~v~~g~~~~~g-~~~i~v~~tpGHT 108 (248)
T TIGR03413 81 ---------------------------------GI------------------THPVKDGDTVTLG-GLEFEVLAVPGHT 108 (248)
T ss_pred ---------------------------------CC------------------cEEeCCCCEEEEC-CEEEEEEECCCCC
Confidence 00 1345567778874 45666554 5899
Q ss_pred cceEEEEEEeCCeeEEEecCCCC
Q 007166 165 IGACNWIISGAKGNIAYISGSNF 187 (615)
Q Consensus 165 LGsa~~~I~~~~~~IvYtgD~s~ 187 (615)
.|+..+.++ ..+++|+||...
T Consensus 109 ~g~i~~~~~--~~~~lftGDtl~ 129 (248)
T TIGR03413 109 LGHIAYYLP--DSPALFCGDTLF 129 (248)
T ss_pred cccEEEEEC--CCCEEEEcCccc
Confidence 999888776 468999999653
No 32
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.33 E-value=4.9e-08 Score=101.60 Aligned_cols=59 Identities=25% Similarity=0.226 Sum_probs=41.5
Q ss_pred Cccccccccch------hhhcccCcE-EEEEecCCccccchHHHhhcccCC---Cc--eEEeeHHHHHHHH
Q 007166 12 HSQSFLHCQMI------FIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGF---SA--KIYITEAAARIGQ 70 (615)
Q Consensus 12 ~~~~lldcg~~------f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf---~g--~Iy~T~pT~~l~~ 70 (615)
+.+.|+|||.- .....+.+| +|||||.|.||+.+||-|.....| .. .||.-...++...
T Consensus 29 ~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~ 99 (292)
T COG1234 29 GEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVE 99 (292)
T ss_pred CeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhh
Confidence 57789999942 222236689 999999999999999976654444 33 6777666664433
No 33
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.02 E-value=8.5e-06 Score=81.50 Aligned_cols=125 Identities=14% Similarity=0.091 Sum_probs=76.3
Q ss_pred Cccccccccchhh------h---cccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIFI------K---LYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNM 81 (615)
Q Consensus 12 ~~~~lldcg~~f~------~---~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~ 81 (615)
+..+|+|||..-. + ....+| .|++||.|.||+|++..+.+... ..++|.......+..-.......
T Consensus 35 ~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 110 (252)
T COG0491 35 GGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPLLLREEILRKAG--- 110 (252)
T ss_pred CceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhhhhhcccccccc---
Confidence 3688999996421 1 113379 99999999999999999987533 46775544433222111000000
Q ss_pred hhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCC-cEEEEEec
Q 007166 82 EYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG-ILIIKAFS 160 (615)
Q Consensus 82 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g-~l~it~~~ 160 (615)
.+ + ...+.+ .......+.-++.+.+.+ .+++.+.+
T Consensus 111 --------------~~-----~------------------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~tp 146 (252)
T COG0491 111 --------------VT-----A------------------EAYAAP-------GASPLRALEDGDELDLGGLELEVLHTP 146 (252)
T ss_pred --------------cc-----c------------------ccCCCC-------ccccceecCCCCEEEecCeEEEEEECC
Confidence 00 0 000001 112233455677777753 47888888
Q ss_pred cccccceEEEEEEeCCeeEEEecCCCC
Q 007166 161 SGLDIGACNWIISGAKGNIAYISGSNF 187 (615)
Q Consensus 161 AGHiLGsa~~~I~~~~~~IvYtgD~s~ 187 (615)
||..|+..+.++.++ ++|+||...
T Consensus 147 -GHT~g~~~~~~~~~~--~l~~gD~~~ 170 (252)
T COG0491 147 -GHTPGHIVFLLEDGG--VLFTGDTLF 170 (252)
T ss_pred -CCCCCeEEEEECCcc--EEEecceec
Confidence 999999999998655 999999553
No 34
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.00 E-value=2.2e-05 Score=80.44 Aligned_cols=105 Identities=13% Similarity=0.122 Sum_probs=69.6
Q ss_pred ccccccccch-----hhhcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhh
Q 007166 13 SQSFLHCQMI-----FIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQF 86 (615)
Q Consensus 13 ~~~lldcg~~-----f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~ 86 (615)
.-+++|.|.. +.+....+| +||+||.|.||+||++.|.+.++ ..+||+.... .. .
T Consensus 24 ~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~----------~~---~----- 84 (258)
T PLN02469 24 DAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLD----------NV---K----- 84 (258)
T ss_pred eEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCC-CCEEEEechh----------cC---C-----
Confidence 4578998831 222225679 99999999999999999988621 4799986421 00 0
Q ss_pred cCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEe-cccccc
Q 007166 87 YGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF-SSGLDI 165 (615)
Q Consensus 87 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~-~AGHiL 165 (615)
+. .+.+.-++.+.+.+.+.++.+ --||..
T Consensus 85 --------------------------------~~------------------~~~v~~gd~i~lg~~~~~~vi~tPGHT~ 114 (258)
T PLN02469 85 --------------------------------GC------------------THPVENGDKLSLGKDVNILALHTPCHTK 114 (258)
T ss_pred --------------------------------CC------------------CeEeCCCCEEEECCceEEEEEECCCCCC
Confidence 00 023555677777533334333 259999
Q ss_pred ceEEEEEEeC--CeeEEEecCCC
Q 007166 166 GACNWIISGA--KGNIAYISGSN 186 (615)
Q Consensus 166 Gsa~~~I~~~--~~~IvYtgD~s 186 (615)
|+..+.+... ..+++||||..
T Consensus 115 ghi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 115 GHISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred CCEEEEeccCCCCCCEEEecCcc
Confidence 9999988642 35699999954
No 35
>PLN02398 hydroxyacylglutathione hydrolase
Probab=97.98 E-value=3.8e-05 Score=80.91 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=69.1
Q ss_pred cccccccc-----hhhhcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007166 14 QSFLHCQM-----IFIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFY 87 (615)
Q Consensus 14 ~~lldcg~-----~f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~ 87 (615)
-+++|-|- .+.+....+| +||+||.|.||+||+..|.+.+ ..+||+.....+. + .
T Consensus 100 ~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~--ga~V~g~~~~~~~----------i-~------ 160 (329)
T PLN02398 100 VGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY--GAKVIGSAVDKDR----------I-P------ 160 (329)
T ss_pred EEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc--CCEEEEehHHhhh----------c-c------
Confidence 35677652 1233335679 9999999999999999998864 5899998643210 0 0
Q ss_pred CCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec-cccccc
Q 007166 88 GAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIG 166 (615)
Q Consensus 88 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~-AGHiLG 166 (615)
+. -..+.-++++.+. +.+++.+. -||..|
T Consensus 161 -------------------------------~~------------------d~~v~dGd~i~lg-g~~l~vi~tPGHT~G 190 (329)
T PLN02398 161 -------------------------------GI------------------DIVLKDGDKWMFA-GHEVLVMETPGHTRG 190 (329)
T ss_pred -------------------------------CC------------------cEEeCCCCEEEEC-CeEEEEEeCCCcCCC
Confidence 00 0245557777774 34555543 499999
Q ss_pred eEEEEEEeCCeeEEEecCCCC
Q 007166 167 ACNWIISGAKGNIAYISGSNF 187 (615)
Q Consensus 167 sa~~~I~~~~~~IvYtgD~s~ 187 (615)
...+.+. +.+++|+||..+
T Consensus 191 hI~~~~~--~~~vLFtGDtLf 209 (329)
T PLN02398 191 HISFYFP--GSGAIFTGDTLF 209 (329)
T ss_pred CEEEEEC--CCCEEEECCCcC
Confidence 9988764 457999999554
No 36
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=97.97 E-value=4.1e-05 Score=81.78 Aligned_cols=118 Identities=18% Similarity=0.096 Sum_probs=77.7
Q ss_pred cCcE-EEEEecCCcccc--chHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhh
Q 007166 28 ARKI-LILKTGRSPMGM--LGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELE 104 (615)
Q Consensus 28 ~~~I-aVllSHah~dH~--gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 104 (615)
.+.| +|||||+|.||+ ..+..|.+.++-.+++++...+.++ +.+.
T Consensus 107 i~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~----~~~~---------------------------- 154 (355)
T PRK11709 107 IREIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDL----WIGW---------------------------- 154 (355)
T ss_pred CCCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHH----HHhc----------------------------
Confidence 4689 999999999999 3555665543335678886666432 1100
Q ss_pred hchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEeccc-----------ccc--------
Q 007166 105 LLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFSSG-----------LDI-------- 165 (615)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~AG-----------HiL-------- 165 (615)
+.. -.+++.++.+|++.+. +++|++.+|- |..
T Consensus 155 --------------Gvp--------------~~rv~~v~~Ge~i~ig-~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d 205 (355)
T PRK11709 155 --------------GVP--------------KERCIVVKPGDVVKVK-DIKIHALDSFDRTALVTLPADGKAAGGVLPDD 205 (355)
T ss_pred --------------CCC--------------cceEEEecCCCcEEEC-CEEEEEEecccccccccccccccccccccccc
Confidence 110 0367889999999994 6999999983 332
Q ss_pred ---ceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeC
Q 007166 166 ---GACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYS 209 (615)
Q Consensus 166 ---Gsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~e 209 (615)
.++.|.|+.++.+|.|+||.........-.+ -.++|++++.
T Consensus 206 ~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~---~~~iDvall~ 249 (355)
T PRK11709 206 MDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGN---DHQIDVALGS 249 (355)
T ss_pred CCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHh---cCCCCEEEec
Confidence 2478999999999999999654211000001 1257999885
No 37
>PLN02962 hydroxyacylglutathione hydrolase
Probab=97.86 E-value=3.1e-05 Score=78.90 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=37.1
Q ss_pred CCccccccccch-------hhhcccCcE-EEEEecCCccccchHHHhhcccCC-CceEEee
Q 007166 11 RHSQSFLHCQMI-------FIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGF-SAKIYIT 62 (615)
Q Consensus 11 ~~~~~lldcg~~-------f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf-~g~Iy~T 62 (615)
.+..+++|.|.. .++..--+| +||+||.|.||+||++.|.++ | ..+||+.
T Consensus 35 ~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~--~~~a~v~~~ 93 (251)
T PLN02962 35 DKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTK--LPGVKSIIS 93 (251)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHH--CCCCeEEec
Confidence 345689998831 222224578 999999999999999999875 4 4788874
No 38
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=97.85 E-value=1.3e-05 Score=80.19 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=44.2
Q ss_pred Cccccccccc---hhh------hcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHH
Q 007166 12 HSQSFLHCQM---IFI------KLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAAR 67 (615)
Q Consensus 12 ~~~~lldcg~---~f~------~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~ 67 (615)
..++|+|-|- .|. +.++.+| +|+|||-|+||+|||||+.+...=..+|||.+-..+
T Consensus 31 ~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 31 GTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred CeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 4789999882 232 2348899 999999999999999999986345679999876654
No 39
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=97.76 E-value=6.3e-05 Score=76.77 Aligned_cols=51 Identities=12% Similarity=-0.079 Sum_probs=38.3
Q ss_pred Cccccccccch-----hhhcccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeH
Q 007166 12 HSQSFLHCQMI-----FIKLYARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITE 63 (615)
Q Consensus 12 ~~~~lldcg~~-----f~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~ 63 (615)
+..+++|.|.. +++...-++ +||+||.|.||+||++.|.++++ ..+||+..
T Consensus 22 ~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~ 78 (251)
T PRK10241 22 GRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQ 78 (251)
T ss_pred CcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecc
Confidence 45689999952 222334568 99999999999999999998622 47899754
No 40
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.47 E-value=0.0003 Score=74.87 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=79.4
Q ss_pred CCccccccccc-hhhhc---------ccCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHH
Q 007166 11 RHSQSFLHCQM-IFIKL---------YARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICM 79 (615)
Q Consensus 11 ~~~~~lldcg~-~f~~~---------~~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~ 79 (615)
.+..+|+|-+- .|.+. ++++| .|+++|...||+|+||-+.+... +.+|+||.+.+++.+.+..+.
T Consensus 43 ~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~~L~~~~~~~--- 118 (388)
T COG0426 43 GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAARFLKGFYHDP--- 118 (388)
T ss_pred CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHHHHHHhcCCc---
Confidence 56778999552 23222 27889 99999999999999999998633 899999999887665333210
Q ss_pred HHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEe
Q 007166 80 NMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAF 159 (615)
Q Consensus 80 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~ 159 (615)
. .++.++-++++++.| =+++|+
T Consensus 119 ----------------------------------------------------~-----~~~ivk~Gd~ldlGg-~tL~Fi 140 (388)
T COG0426 119 ----------------------------------------------------E-----WFKIVKTGDTLDLGG-HTLKFI 140 (388)
T ss_pred ----------------------------------------------------c-----ceeecCCCCEeccCC-cEEEEE
Confidence 0 157888899999964 466666
Q ss_pred cc--ccccceEEEEEEeCCeeEEEecCCCC
Q 007166 160 SS--GLDIGACNWIISGAKGNIAYISGSNF 187 (615)
Q Consensus 160 ~A--GHiLGsa~~~I~~~~~~IvYtgD~s~ 187 (615)
+| =|-.|+-.-.. ...+|+||+|.-+
T Consensus 141 ~ap~LHWPd~m~TYd--~~~kILFS~D~fG 168 (388)
T COG0426 141 PAPFLHWPDTMFTYD--PEDKILFSCDAFG 168 (388)
T ss_pred eCCCCCCCCceeEee--cCCcEEEcccccc
Confidence 65 45555543321 3578999999543
No 41
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.43 E-value=0.0014 Score=69.16 Aligned_cols=40 Identities=18% Similarity=0.019 Sum_probs=30.8
Q ss_pred CcE-EEEEecCCccccchHHHhhcccCC------CceEEeeHHHHHHHH
Q 007166 29 RKI-LILKTGRSPMGMLGLPFLTRMEGF------SAKIYITEAAARIGQ 70 (615)
Q Consensus 29 ~~I-aVllSHah~dH~gaLP~L~~~~gf------~g~Iy~T~pT~~l~~ 70 (615)
..| ..||||+|+||+.||=.-. .++ +-+||+...|.+-.+
T Consensus 78 ~~I~~ylItH~HLDHi~gLvins--p~~~~~~~~~K~i~gl~~ti~alk 124 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINS--PEDYLPNSSPKTIYGLPSTIEALK 124 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcC--cccccccCCCCcEEECHHHHHHHH
Confidence 468 9999999999999995333 344 347999999976544
No 42
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=97.37 E-value=0.00051 Score=79.74 Aligned_cols=125 Identities=8% Similarity=0.106 Sum_probs=76.4
Q ss_pred Cccccccccchh-------------hhcc-cCcE-EEEEecCCccccchHHHhhcccCCC-ceEEeeHHHHHHHHHHHHH
Q 007166 12 HSQSFLHCQMIF-------------IKLY-ARKI-LILKTGRSPMGMLGLPFLTRMEGFS-AKIYITEAAARIGQLMMEE 75 (615)
Q Consensus 12 ~~~~lldcg~~f-------------~~~~-~~~I-aVllSHah~dH~gaLP~L~~~~gf~-g~Iy~T~pT~~l~~lll~D 75 (615)
+..+|+|||..+ .+.. .. | +|++||.|.||+||++.+.++ |. .+||...- .
T Consensus 459 ~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~--~~v~~i~~~~~-~--------- 525 (662)
T TIGR00361 459 GKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH--HPVKRLVIPKG-F--------- 525 (662)
T ss_pred CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh--CCccEEEeccc-h---------
Confidence 466899999643 2222 44 9 999999999999999999985 53 46765321 0
Q ss_pred HHHHHHhhhhhcCCCCCCCccchhhhHhhhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEE
Q 007166 76 LICMNMEYRQFYGAEESSGPQWMKWEELELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILI 155 (615)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~ 155 (615)
... +. .++.+.-++.+++. +++
T Consensus 526 ----~~~------------------------------------~~-----------------~~~~~~~G~~~~~~-~~~ 547 (662)
T TIGR00361 526 ----VEE------------------------------------GV-----------------AIEECKRGDVWQWQ-GLQ 547 (662)
T ss_pred ----hhC------------------------------------CC-----------------ceEecCCCCEEeEC-CEE
Confidence 000 00 01223445566653 466
Q ss_pred EEEecccc------ccceEEEEEEeCCeeEEEecCCCCCC-CCCCCCCCCCCCCCCEEEeC
Q 007166 156 IKAFSSGL------DIGACNWIISGAKGNIAYISGSNFAS-GHAMDFDYRAIQGSDLILYS 209 (615)
Q Consensus 156 it~~~AGH------iLGsa~~~I~~~~~~IvYtgD~s~~~-~~~~~~d~~~l~~~DvLI~e 209 (615)
++.+.-+. -=.||.+.++.++.++++|||..... +.... ... .-++|+|.+.
T Consensus 548 ~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~-~~~-~l~~dvLk~~ 606 (662)
T TIGR00361 548 FHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMR-VFP-NIKADVLQVG 606 (662)
T ss_pred EEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHHHHHh-ccc-CcCccEEEeC
Confidence 66664322 23478899999999999999977531 11111 111 1257888875
No 43
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=97.34 E-value=3.5e-05 Score=86.25 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=41.6
Q ss_pred CcEEEEEeccccccceEEEEEEeC-CeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCCCCCCC
Q 007166 152 GILIIKAFSSGLDIGACNWIISGA-KGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSDLSSLD 215 (615)
Q Consensus 152 g~l~it~~~AGHiLGsa~~~I~~~-~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es~~t~~ 215 (615)
|...|.-.++=||.=|+...|..+ +.||+|+||..... .=...-.++|+||=|+ |+.
T Consensus 594 ~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~-----~~v~~g~datlLIHEA--T~E 651 (746)
T KOG2121|consen 594 GLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCE-----DLVKAGKDATLLIHEA--TLE 651 (746)
T ss_pred CceeEEecCcEecChhhceeEecccceEEEEcCCCCCch-----hHhhhccCCceEEeeh--hhc
Confidence 456777888889999999999876 58999999944211 0001125899999999 774
No 44
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=97.31 E-value=0.00028 Score=66.84 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=41.9
Q ss_pred eeecCCcEEEeCCcEEEEEeccccc-------cceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCCEEEeCC
Q 007166 140 QTLRFGEEACYNGILIIKAFSSGLD-------IGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSDLILYSD 210 (615)
Q Consensus 140 ~~v~Y~q~~~l~g~l~it~~~AGHi-------LGsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~DvLI~es 210 (615)
+.+.-++.+++. +++|+.+++-|. -+.+.|.|+.++.+|.+.||..... .......+.++|++++-.
T Consensus 63 ~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~---~~~~~~~~~~vDvl~~p~ 136 (163)
T PF13483_consen 63 HVVAPGGEYRFG-GFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPP---DDEQLKQLGKVDVLFLPV 136 (163)
T ss_dssp EEE-TTEEEECT-TEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S------HHHHHHH-S-SEEEEE-
T ss_pred EEEccceEEEEe-eeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCC---CHHHHhcccCCCEEEecC
Confidence 345557778874 789999988774 4478999999999999999954310 011112356899999863
No 45
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=97.21 E-value=0.00011 Score=75.83 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=41.8
Q ss_pred cccccccchhhhcccC----cE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHH
Q 007166 14 QSFLHCQMIFIKLYAR----KI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQ 70 (615)
Q Consensus 14 ~~lldcg~~f~~~~~~----~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~ 70 (615)
++++|+|..+.+..+. .+ +||+||.|.||+.|+|.|.+ +|..++|++..|..-..
T Consensus 42 ~~lid~g~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~--~~~~~~~~~~~~~~~~~ 101 (269)
T COG1235 42 TLLIDAGPDLRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRR--AYTLPIYVNPGTLRAST 101 (269)
T ss_pred eEEEecChhHHhhhhcccccccCeEEEecccHHhhcChHHHHH--HhcCCcccccceecccc
Confidence 3345555544444444 89 99999999999999999997 47889999988866554
No 46
>PRK11539 ComEC family competence protein; Provisional
Probab=97.18 E-value=0.00078 Score=79.32 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=37.1
Q ss_pred CCccccccccchh-------------hhcccCcE-EEEEecCCccccchHHHhhcccCC-CceEEee
Q 007166 11 RHSQSFLHCQMIF-------------IKLYARKI-LILKTGRSPMGMLGLPFLTRMEGF-SAKIYIT 62 (615)
Q Consensus 11 ~~~~~lldcg~~f-------------~~~~~~~I-aVllSHah~dH~gaLP~L~~~~gf-~g~Iy~T 62 (615)
++..+|+|+|..+ .+..--+| .+++||.|.||+||++.+.+. | ..+||..
T Consensus 519 ~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~--~~~~~i~~~ 583 (755)
T PRK11539 519 NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHA--WPMAWIRSP 583 (755)
T ss_pred CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHh--CCcceeecc
Confidence 4567899999532 22212259 999999999999999999875 4 4677764
No 47
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=96.67 E-value=0.0059 Score=63.37 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=33.2
Q ss_pred cccccccc--------hhhhcc-cCcE-EEEEecCCccccchHHHhhcccCCCceEEe
Q 007166 14 QSFLHCQM--------IFIKLY-ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYI 61 (615)
Q Consensus 14 ~~lldcg~--------~f~~~~-~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~ 61 (615)
++++|-|. +|.+.. ..+| .+++||+|-||+|+++-+.+.+.+ ..+|+
T Consensus 65 ~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i 121 (293)
T COG2333 65 TILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWI 121 (293)
T ss_pred eEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEE
Confidence 55666553 233333 7889 999999999999999999985333 23444
No 48
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=96.37 E-value=0.013 Score=59.46 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=65.0
Q ss_pred cCcE-EEEEecCCccccchHHHhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHhhhc
Q 007166 28 ARKI-LILKTGRSPMGMLGLPFLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEELELL 106 (615)
Q Consensus 28 ~~~I-aVllSHah~dH~gaLP~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 106 (615)
...+ +||.||-|.||+||+.-|.+..-+..+||.-. .|
T Consensus 49 ~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~----------~~------------------------------- 87 (265)
T KOG0813|consen 49 NRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGA----------DD------------------------------- 87 (265)
T ss_pred cCceeEEEeccccccccCcHHHHHhhccCCcEEecCC----------hh-------------------------------
Confidence 5678 99999999999999999998633344555422 00
Q ss_pred hhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCCcEEEEEec-cccccceEEEEEE-eCCeeEEEecC
Q 007166 107 PSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNGILIIKAFS-SGLDIGACNWIIS-GAKGNIAYISG 184 (615)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g~l~it~~~-AGHiLGsa~~~I~-~~~~~IvYtgD 184 (615)
+..+| . ..++.++++.+. +++|+.+. =||.-|+-.+.+. ..+++.+||||
T Consensus 88 --------------r~~~i-----------~--~~~~~~e~~~~~-g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGD 139 (265)
T KOG0813|consen 88 --------------RIPGI-----------T--RGLKDGETVTVG-GLEVRCLHTPGHTAGHICYYVTESTGERAIFTGD 139 (265)
T ss_pred --------------cCccc-----------c--ccCCCCcEEEEC-CEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCC
Confidence 00000 0 237789999996 57888765 4999999998888 56899999999
Q ss_pred CC
Q 007166 185 SN 186 (615)
Q Consensus 185 ~s 186 (615)
..
T Consensus 140 tl 141 (265)
T KOG0813|consen 140 TL 141 (265)
T ss_pred ce
Confidence 54
No 49
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=95.35 E-value=0.094 Score=46.40 Aligned_cols=84 Identities=11% Similarity=0.205 Sum_probs=58.1
Q ss_pred cCCCCEEEEecCCCCCcchHHHHHHHHcCCCCCcEEe--cCC-cchh--cccC---C--CceeeeEEEEeecccCCCHhh
Q 007166 360 NWQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVL--ENE-VDAE--LAVL---P--FKPISMKVLQCSFLSGKKLQK 429 (615)
Q Consensus 360 ~~~~P~VV~as~gmL~~G~s~~ll~~~~~d~~N~IIl--~g~-~~~~--~~l~---~--~~~v~~~v~~~~fs~haD~~~ 429 (615)
+..+-.|=+++-+.++......+++...+...+.|.| ||. +... .... + ...-+.++..+|||-|+.+.+
T Consensus 10 d~~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~~~~~~~~~~~~~~~~~VPYSeHSSf~E 89 (110)
T PF07522_consen 10 DPSETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSVSISPSLQSRGNVRIYRVPYSEHSSFSE 89 (110)
T ss_pred CCCCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCccccccccccccCCCceEEEEecccCCCHHH
Confidence 3445577777777777666777777777777777665 452 1111 1111 1 123356788999999999999
Q ss_pred HHHHHHhcCCCEEE
Q 007166 430 VQPLLKILQPKLVL 443 (615)
Q Consensus 430 l~~~i~~l~P~~vi 443 (615)
|.+|++.++|++|+
T Consensus 90 L~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 90 LKEFVSFLKPKKII 103 (110)
T ss_pred HHHHHHhcCCcEEE
Confidence 99999999999987
No 50
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=93.73 E-value=0.27 Score=49.25 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=41.0
Q ss_pred CcEEEeCCcEEEEEec------cccccceE-EEEEEeCCeeEEEecCCCCC-CCCCCCCCCCCCCCCCEEEeCCCCC
Q 007166 145 GEEACYNGILIIKAFS------SGLDIGAC-NWIISGAKGNIAYISGSNFA-SGHAMDFDYRAIQGSDLILYSDLSS 213 (615)
Q Consensus 145 ~q~~~l~g~l~it~~~------AGHiLGsa-~~~I~~~~~~IvYtgD~s~~-~~~~~~~d~~~l~~~DvLI~es~~t 213 (615)
++++++ |+.+|.|-+ .|-=||=. ++.|+.++.+|+|++|..+. ..-+..+ -.-+.+|++|+.+-.|
T Consensus 139 gk~f~f-G~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~--i~e~~P~v~ii~GPpt 212 (304)
T COG2248 139 GKTFEF-GGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEF--ILEKRPDVLIIGGPPT 212 (304)
T ss_pred CceEEe-CCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHH--HHhcCCCEEEecCCch
Confidence 566777 455666533 45667765 57778889999999997653 1111111 1124789999986334
No 51
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=92.25 E-value=0.99 Score=46.02 Aligned_cols=68 Identities=16% Similarity=0.105 Sum_probs=42.2
Q ss_pred cceeecCCcEEEeCCcEEEEEe-----cccc--------ccceEEEEEEeCCeeEEEecCCCCCCCCCCCCCCCCCCCCC
Q 007166 138 KVQTLRFGEEACYNGILIIKAF-----SSGL--------DIGACNWIISGAKGNIAYISGSNFASGHAMDFDYRAIQGSD 204 (615)
Q Consensus 138 ~i~~v~Y~q~~~l~g~l~it~~-----~AGH--------iLGsa~~~I~~~~~~IvYtgD~s~~~~~~~~~d~~~l~~~D 204 (615)
++..+++++.+++. .+++++. ++-| .-+.+.|.|+.++.+|...||.... ..........+|
T Consensus 101 ~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~----~~~~~~~~~~~D 175 (258)
T COG2220 101 RVHELGWGDVIELG-DLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYL----FLIIEELDGPVD 175 (258)
T ss_pred eEEeecCCceEEec-CcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHH----HHhhhhhcCCcc
Confidence 46677888888885 3454332 2233 3457789999999999999995530 000111122379
Q ss_pred EEEeCC
Q 007166 205 LILYSD 210 (615)
Q Consensus 205 vLI~es 210 (615)
++++.-
T Consensus 176 vallPi 181 (258)
T COG2220 176 VALLPI 181 (258)
T ss_pred EEEecc
Confidence 998873
No 52
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=87.19 E-value=1.1 Score=45.57 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=63.3
Q ss_pred CcE-EEEEecCCccccchHH----HhhcccCCCceEEeeHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCccchhhhHh
Q 007166 29 RKI-LILKTGRSPMGMLGLP----FLTRMEGFSAKIYITEAAARIGQLMMEELICMNMEYRQFYGAEESSGPQWMKWEEL 103 (615)
Q Consensus 29 ~~I-aVllSHah~dH~gaLP----~L~~~~gf~g~Iy~T~pT~~l~~lll~D~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 103 (615)
..| --+|||+|+||+-||- -..++ =+-.||.-.-|.+..+--.-..+ -|-+-
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~l------------------vWP~l--- 167 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWL------------------VWPNL--- 167 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhccc------------------ccCCc---
Confidence 568 8899999999999873 33332 14579998888765542211110 01100
Q ss_pred hhchhhhhhhhccCCCCCCCCCCchHHHHHHHHhcceeecCCcEEEeCC-cEEEEEecccccc------ceEEEEEEeC-
Q 007166 104 ELLPSALRKIALGEDGSELGGGCPCIAHVKDCISKVQTLRFGEEACYNG-ILIIKAFSSGLDI------GACNWIISGA- 175 (615)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~ly~dv~~~~~~i~~v~Y~q~~~l~g-~l~it~~~AGHiL------Gsa~~~I~~~- 175 (615)
.+.+. -+-+++.|+-.|...+.- .+++.||+--|-. =|+++++...
T Consensus 168 ------------t~~gs--------------~~~~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nk 221 (356)
T COG5212 168 ------------TDSGS--------------GTYRMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNK 221 (356)
T ss_pred ------------ccccC--------------ceEEEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCC
Confidence 00011 122566676666655531 1567777776655 3477888765
Q ss_pred -CeeEEEecCC
Q 007166 176 -KGNIAYISGS 185 (615)
Q Consensus 176 -~~~IvYtgD~ 185 (615)
++-++|.||.
T Consensus 222 S~~~f~~fGDv 232 (356)
T COG5212 222 SNEFFAYFGDV 232 (356)
T ss_pred CcceEEEecCC
Confidence 6778888883
No 53
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=62.53 E-value=16 Score=32.55 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=57.4
Q ss_pred cchHHHHHHHHcCCCCCcEEecCC------c-----chhcccCCCceeeeEEEEe-ecccCCCHhhHHHHHHhc-CCCEE
Q 007166 376 LGPTIHLLRRWSGDHNSLLVLENE------V-----DAELAVLPFKPISMKVLQC-SFLSGKKLQKVQPLLKIL-QPKLV 442 (615)
Q Consensus 376 ~G~s~~ll~~~~~d~~N~IIl~g~------~-----~~~~~l~~~~~v~~~v~~~-~fs~haD~~~l~~~i~~l-~P~~v 442 (615)
..++..++-.-....-+.|++... + -+++.+++|...++++.-+ +||.|+..+.+.+|+.+. +-+++
T Consensus 21 ~qdalDLi~~~~~~~~~~i~l~~~~l~~dFF~L~TglAGeiLQKf~NY~iklAivGD~s~~~~S~~l~dfi~EsN~G~~~ 100 (113)
T PF13788_consen 21 EQDALDLIGTAYEHGADRIILPKEALSEDFFDLRTGLAGEILQKFVNYRIKLAIVGDFSAYATSKSLRDFIYESNRGNHF 100 (113)
T ss_pred hhHHHHHHHHHHHcCCCEEEEEhHHCCHHHHHhhcchHHHHHHHHHhhceeEEEEEcccccccchhHHHHHHHhcCCCeE
Confidence 346778775544444455665321 1 2257789999999999888 799998889999999987 56788
Q ss_pred EEeccCccccccc
Q 007166 443 LFPEEWRTHVSFS 455 (615)
Q Consensus 443 ilvHG~~~~~~~l 455 (615)
.++.-..++..+|
T Consensus 101 ~F~~~~~eA~~~L 113 (113)
T PF13788_consen 101 FFVPDEEEAIAWL 113 (113)
T ss_pred EEECCHHHHHhhC
Confidence 8887766665543
No 54
>PRK00685 metal-dependent hydrolase; Provisional
Probab=59.44 E-value=14 Score=36.53 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=36.8
Q ss_pred ccCCCHhhHHHHHHhcCCCEEEEeccCcc-----cccccc----cCCceeeecCCCcEEEe
Q 007166 422 LSGKKLQKVQPLLKILQPKLVLFPEEWRT-----HVSFSD----VTSFSVSHYSENETIHI 473 (615)
Q Consensus 422 s~haD~~~l~~~i~~l~P~~vilvHG~~~-----~~~~l~----~~~~~v~~p~~ge~i~l 473 (615)
..|.+.++..++++.++|+++|++|-+.- ..+.++ +.+.++..++.|+.+++
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEGLGTKVVILKPGESIEL 228 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHhcCCcEEECCCCCEeeC
Confidence 35899999999999999999999997531 112222 22446667777777654
No 55
>PF11718 CPSF73-100_C: Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; InterPro: IPR021718 This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins. The exact function of this domain is not known.
Probab=52.89 E-value=42 Score=33.39 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=39.0
Q ss_pred ceEEEEEEEeeCCeeeeecCCCCCCC-------CCCCCceEecCCChHHHHHHHHHCCCceEEe
Q 007166 504 ITRLKGRLFVNHGKHQLLPENEPGGS-------SQTRPFLHWGSPDPENLLAELSKMGINGSVE 560 (615)
Q Consensus 504 ~a~v~g~l~~~~~~~~l~~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~L~~~g~~~~~~ 560 (615)
...++|+|+.+|++|+|+.|.+-.+. ..+++.+.+... ++-++..|.+.-=..+..
T Consensus 2 G~~vsGvLV~~~f~~~lm~p~DL~~yt~L~ts~i~Qrq~i~~~~~-~~ll~~~L~~~fg~ve~~ 64 (216)
T PF11718_consen 2 GQQVSGVLVKKDFDYHLMAPDDLREYTDLSTSTITQRQSIPFNGS-FSLLRWHLEQMFGDVEEI 64 (216)
T ss_pred CcEEEEEEEecCCcccEEcHHHHhhcCCeeeeEEEEEEEEEeCCC-HHHHHHHHHHhhCceEEe
Confidence 36899999999999999999876432 223344555444 777888888866444443
No 56
>PRK03094 hypothetical protein; Provisional
Probab=49.29 E-value=44 Score=27.83 Aligned_cols=69 Identities=20% Similarity=0.136 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHCCCceEEeeccccCCCCCceEEEEeCCCCcEEEEecceeEEEcCCHHHHHHHHHHHH
Q 007166 541 PDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRAAVTVISAADKNLASRIVKAME 609 (615)
Q Consensus 541 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~~~t~I~~~~~~~r~~l~~~~~ 609 (615)
-.|+++++.|+++|+..+-.....+...++-++|.=++.+-.=|+-....+-|++..=++.+.|++.|.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~A~G~TaeEI~~~ve 76 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVITASGLTADEICQQVE 76 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEEcCCCCHHHHHHHHH
Confidence 468899999999999998554432233444444433221111133333334455554455555555554
No 57
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=47.95 E-value=13 Score=29.49 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=27.0
Q ss_pred cCCccccc-cccch----hhhcc--cCcE-EEEEecCC-ccccch
Q 007166 10 FRHSQSFL-HCQMI----FIKLY--ARKI-LILKTGRS-PMGMLG 45 (615)
Q Consensus 10 ~~~~~~ll-dcg~~----f~~~~--~~~I-aVllSHah-~dH~ga 45 (615)
+++.+-|+ .||.- +.+.- ..++ .||+|+.. .+++||
T Consensus 19 ~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 19 FDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred eCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 34577788 89953 33322 7899 99999999 999986
No 58
>PRK00055 ribonuclease Z; Reviewed
Probab=44.61 E-value=32 Score=34.65 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=59.9
Q ss_pred CCCCEEEEecCCCCCcchHHHHHHHHcCCCCCcEEecCCcchhcccCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCC
Q 007166 361 WQEPCIVFSPHWSLRLGPTIHLLRRWSGDHNSLLVLENEVDAELAVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPK 440 (615)
Q Consensus 361 ~~~P~VV~as~gmL~~G~s~~ll~~~~~d~~N~IIl~g~~~~~~~l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~ 440 (615)
.++..|++++... .... +..++.+. ..+|++..+..... ..-...+|+...+..++.++++|+
T Consensus 164 ~~g~~~~y~~Dt~----~~~~-~~~~~~~~-d~li~E~~~~~~~~-----------~~~~~~~H~~~~~a~~~~~~~~~~ 226 (270)
T PRK00055 164 RKGRKVAYCGDTR----PCEA-LVELAKGA-DLLVHEATFGDEDE-----------ELAKEYGHSTARQAAEIAKEAGVK 226 (270)
T ss_pred CCCcEEEEeCCCC----CcHH-HHHHhCCC-CEEEEeccCCcchh-----------hHHhhcCCCCHHHHHHHHHHcCCC
Confidence 4556788877543 2222 33444443 34555544332110 001246899999999999999999
Q ss_pred EEEEeccCcccc---ccc----ccCCceeeecCCCcEEEeCCC
Q 007166 441 LVLFPEEWRTHV---SFS----DVTSFSVSHYSENETIHIPSL 476 (615)
Q Consensus 441 ~vilvHG~~~~~---~~l----~~~~~~v~~p~~ge~i~l~~~ 476 (615)
++++.|=.+... +.+ ++.-.++..+..|.+|+++..
T Consensus 227 ~~vl~H~~~~~~~~~~~~~~~~~~~~~~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 227 RLILTHFSPRYTGDPEELLKEAREIFPNTELAEDLMRVEVPFR 269 (270)
T ss_pred EEEEEeeccccCCCHHHHHHHHHHHcCCcEEccCCcEEEecCC
Confidence 999999765432 111 111126778888999988764
No 59
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.42 E-value=14 Score=40.64 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHH---HHHHHHhCCCcccEEEECchHHHHHHHHHHhHHhhh
Q 007166 247 EEMEKLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQ---IAIFMECSSLKIPIYIISSVAEELLAYTNTIPEWLC 321 (615)
Q Consensus 247 ~e~e~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~---L~~~~~~~~l~vpIy~~s~~a~~~~~~~~~~~ewl~ 321 (615)
++||+.+-+-+.-.+.+++| +..+-++|.+.+ |.+.|...+ | .++++.++-++|+.|.-|..
T Consensus 363 kqRDmy~yiHDQTLrL~NqG-------~T~~eI~~~~~lPpaL~~~W~~rG-----Y-yGSvshNarAVy~rYlG~yD 427 (655)
T COG2015 363 KQRDMYKYIHDQTLRLANQG-------YTGNEIADMIQLPPALAREWYTRG-----Y-YGSVSHNARAVYNRYLGYYD 427 (655)
T ss_pred HHHHHHHHHHHHHHHHHhcC-------ccHHHHHHHhcCChHHHHhHhhcC-----c-cccccccHHHHHHHHhcccc
Confidence 55565544333333333444 335556666654 777787765 3 37788888899999988864
No 60
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=41.76 E-value=23 Score=33.62 Aligned_cols=26 Identities=23% Similarity=0.147 Sum_probs=24.5
Q ss_pred cccCCCHhhHHHHHHhcCCCEEEEec
Q 007166 421 FLSGKKLQKVQPLLKILQPKLVLFPE 446 (615)
Q Consensus 421 fs~haD~~~l~~~i~~l~P~~vilvH 446 (615)
-..|++.+++.+++++++|++++++|
T Consensus 168 ~~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 168 GPGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp CTTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 37899999999999999999999998
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=35.40 E-value=39 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHHHh
Q 007166 254 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFMEC 292 (615)
Q Consensus 254 ~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~~~ 292 (615)
.+++.+.+.|+.||.++|-+|.-++.+|++..+...+.+
T Consensus 146 ~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 146 LALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred HHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 466788899999999999999999999999888776654
No 62
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=30.40 E-value=97 Score=30.29 Aligned_cols=45 Identities=18% Similarity=0.018 Sum_probs=31.4
Q ss_pred hHHHHHHhcCCCEEEEeccCcccccccccCCceeeecCCCcEEEeCCCCe
Q 007166 429 KVQPLLKILQPKLVLFPEEWRTHVSFSDVTSFSVSHYSENETIHIPSLKE 478 (615)
Q Consensus 429 ~l~~~i~~l~P~~vilvHG~~~~~~~l~~~~~~v~~p~~ge~i~l~~~~~ 478 (615)
....-++++.|..|.++.|..+.- .+| +.....+.+.|.+|-.-+
T Consensus 129 ~~~pei~~l~~~~v~CiyG~~E~d-~~c----p~l~~~~~~~i~lpGgHH 173 (192)
T PF06057_consen 129 PVIPEIAKLPPAPVQCIYGEDEDD-SLC----PSLRQPGVEVIALPGGHH 173 (192)
T ss_pred CchHHHHhCCCCeEEEEEcCCCCC-CcC----ccccCCCcEEEEcCCCcC
Confidence 578888899999999999988764 333 112234567888886444
No 63
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=29.77 E-value=58 Score=31.55 Aligned_cols=33 Identities=6% Similarity=0.006 Sum_probs=26.5
Q ss_pred EeCCcEEEEEeccccccceEEEEEEeCCeeEEEecC
Q 007166 149 CYNGILIIKAFSSGLDIGACNWIISGAKGNIAYISG 184 (615)
Q Consensus 149 ~l~g~l~it~~~AGHiLGsa~~~I~~~~~~IvYtgD 184 (615)
++-+++++-..+--|..|.....++- ++++|||
T Consensus 104 ~i~~g~~vi~l~G~ktpGE~ALlled---~vLi~GD 136 (199)
T PF14597_consen 104 EIVPGLWVIHLPGSKTPGELALLLED---RVLITGD 136 (199)
T ss_dssp BSSTTEEEEEE-SSSSTTEEEEEETT---TEEEESS
T ss_pred CccCceEEEEcCCCCCCceeEEEecc---ceEEecc
Confidence 44567888888777999999999874 5999999
No 64
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=26.16 E-value=1.2e+02 Score=28.25 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHH
Q 007166 254 FICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIF 289 (615)
Q Consensus 254 ~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~ 289 (615)
.+|..+.++.++|.+|||-|-.-.+.++|=..|.++
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 588999999999999999999999999988877654
No 65
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=26.06 E-value=81 Score=30.50 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=45.2
Q ss_pred CEEEEecCCCCCcchHHHHHHHHcCC-CCCcEEecCCcchhcc-cCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCE
Q 007166 364 PCIVFSPHWSLRLGPTIHLLRRWSGD-HNSLLVLENEVDAELA-VLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKL 441 (615)
Q Consensus 364 P~VV~as~gmL~~G~s~~ll~~~~~d-~~N~IIl~g~~~~~~~-l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~ 441 (615)
|.|-|=+...=+.--+..+++++... |.-.|++|-.-+.+.. .....+-.+.+.++|++. ...+.++++.++|+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~---~~~~~rfl~~~~P~~ 98 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDF---PWAVRRFLDHWRPDL 98 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SS---HHHHHHHHHHH--SE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccC---HHHHHHHHHHhCCCE
Confidence 66666543322222467788888875 6666777543122111 111111245566788753 556788999999999
Q ss_pred EEEeccC--cccccccccCCceeee
Q 007166 442 VLFPEEW--RTHVSFSDVTSFSVSH 464 (615)
Q Consensus 442 vilvHG~--~~~~~~l~~~~~~v~~ 464 (615)
+|++.+| ++-+..+++.|+++..
T Consensus 99 ~i~~EtElWPnll~~a~~~~ip~~L 123 (186)
T PF04413_consen 99 LIWVETELWPNLLREAKRRGIPVVL 123 (186)
T ss_dssp EEEES----HHHHHH-----S-EEE
T ss_pred EEEEccccCHHHHHHHhhcCCCEEE
Confidence 9999997 4444444566776654
No 66
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=24.94 E-value=1.2e+02 Score=30.51 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=25.4
Q ss_pred ccCCCHhhHHHHHHhcCCCEEEEeccCc
Q 007166 422 LSGKKLQKVQPLLKILQPKLVLFPEEWR 449 (615)
Q Consensus 422 s~haD~~~l~~~i~~l~P~~vilvHG~~ 449 (615)
-+|++..++.++++..+|+++++.|=.+
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 4799999999999999999999999654
No 67
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.90 E-value=2.1e+02 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=23.2
Q ss_pred CChHHHHHHHHHCCCceEEeeccccCCCCCceEEE
Q 007166 541 PDPENLLAELSKMGINGSVERCMTDAESEDGFTVK 575 (615)
Q Consensus 541 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~ 575 (615)
-.|++++++|+++|+..+-.....+...++-.+|.
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvt 42 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVT 42 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCccccCCcCEEEEE
Confidence 35789999999999998865543323344344433
No 68
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=24.41 E-value=1.5e+02 Score=31.22 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=32.7
Q ss_pred eeEEEEe--ecccCCCHhhHHHHHHhcCCCEEEEeccCccc
Q 007166 413 SMKVLQC--SFLSGKKLQKVQPLLKILQPKLVLFPEEWRTH 451 (615)
Q Consensus 413 ~~~v~~~--~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~ 451 (615)
.++|..+ ++-.|...+++.+=+.+.+|+-|+++|||...
T Consensus 115 ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 115 GAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSST 155 (385)
T ss_pred CceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccc
Confidence 4555555 78899999999999999999999999999653
No 69
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=23.97 E-value=91 Score=28.96 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=23.6
Q ss_pred eeEEEEeecccC--CCHhhHHHHHHhcCCCEEEEec
Q 007166 413 SMKVLQCSFLSG--KKLQKVQPLLKILQPKLVLFPE 446 (615)
Q Consensus 413 ~~~v~~~~fs~h--aD~~~l~~~i~~l~P~~vilvH 446 (615)
++.|..+|+.+. .+.++..++++.++||.||=+|
T Consensus 128 ~vDvl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 128 KVDVLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp S-SEEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CCCEEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 455667777764 6899999999999999999877
No 70
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.71 E-value=4.5e+02 Score=22.46 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHCCCceEEeeccccCCCCCceEEEEeCCCCcEEEEec
Q 007166 540 SPDPENLLAELSKMGINGSVERCMTDAESEDGFTVKVQDPEKSMIEVRA 588 (615)
Q Consensus 540 ~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~i~i~~~~~~~I~~~~ 588 (615)
.++.+.+.+.|+++|++.+.++.-..++....-.|.|.. |+.++.+++
T Consensus 11 ~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~ieik~-E~kkL~v~t 58 (96)
T COG4004 11 KPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRIEIKP-ENKKLLVNT 58 (96)
T ss_pred CCCHHHHHHHHHHhCeeEeecccEEEEecCCceEEEEec-ccceEEEec
Confidence 678999999999999998877655445555555666755 777777776
No 71
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=22.61 E-value=27 Score=40.30 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=31.1
Q ss_pred cCCccccccccc----hhhhcc--cCcE-EEEEecCCccccchHHHhhcc
Q 007166 10 FRHSQSFLHCQM----IFIKLY--ARKI-LILKTGRSPMGMLGLPFLTRM 52 (615)
Q Consensus 10 ~~~~~~lldcg~----~f~~~~--~~~I-aVllSHah~dH~gaLP~L~~~ 52 (615)
+.+-+||.+-|. .|.+.+ ...| +|||||.-.|.++|+--|+++
T Consensus 55 vnGf~iLv~GgserKS~fwklVrHldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 55 VNGFNILVNGGSERKSCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred ecceEEeecCCcccccchHHHHHHHhhhhhhhhcccccCccccchHHHHH
Confidence 334455555553 266655 7899 999999999999999877653
No 72
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=22.19 E-value=1.7e+02 Score=27.95 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEecCChhhHHHHHHHHHHHH
Q 007166 251 KLAFICSCAIDSVKAGGSVLIPINRVGVFLQLLEQIAIFM 290 (615)
Q Consensus 251 ~l~~l~~~I~~tl~~GG~VLIP~fa~GR~qELl~~L~~~~ 290 (615)
....++..+.+.|++||.+++=++...+.-+++..|...+
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~ 163 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLF 163 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhh
Confidence 3445678899999999999997777777777777776654
No 73
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=21.99 E-value=1.9e+02 Score=30.22 Aligned_cols=95 Identities=11% Similarity=0.122 Sum_probs=59.3
Q ss_pred CCCCcEEecCCcchh-c--ccCCCceeeeEEEEeecccCCCHhhHHHHHHhcCCCEEEEeccCccc--------cccccc
Q 007166 389 DHNSLLVLENEVDAE-L--AVLPFKPISMKVLQCSFLSGKKLQKVQPLLKILQPKLVLFPEEWRTH--------VSFSDV 457 (615)
Q Consensus 389 d~~N~IIl~g~~~~~-~--~l~~~~~v~~~v~~~~fs~haD~~~l~~~i~~l~P~~vilvHG~~~~--------~~~l~~ 457 (615)
+-++.++|||+.... | ......++++.|...+=-+ +....-..|+++++|+..++--|+.+. ++.|.+
T Consensus 180 ~g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV~HHG-S~tSss~~Fl~~v~Pk~AliS~G~~N~yghPh~~Vl~rl~~ 258 (293)
T COG2333 180 FGGNSFLLTGDLEEKGEKLLKKYGPDLRADVLKVGHHG-SKTSSSLAFLEAVKPKVALISSGRNNRYGHPHQEVLERLQK 258 (293)
T ss_pred eCCeeEEEecCCCchhHHHHHhhCCCccceEEEeccCC-ccccCcHHHHHhcCCcEEEEEeeccCCCCCCcHHHHHHHHh
Confidence 346789999985442 2 1233445777777654211 334555779999999998888887443 455556
Q ss_pred CCceeeecCCCcEEEeCCCCeeEEEEE
Q 007166 458 TSFSVSHYSENETIHIPSLKESAELEI 484 (615)
Q Consensus 458 ~~~~v~~p~~ge~i~l~~~~~~~~v~l 484 (615)
.++++|--...=+|.+.+....+.+.-
T Consensus 259 ~~~~v~rTd~~G~I~~~~~~~~~~~~~ 285 (293)
T COG2333 259 RGIKVYRTDQQGAITVTFSGDGWSIQT 285 (293)
T ss_pred cCCeEEecCCCCeEEEEeCCCeEEEEE
Confidence 777776655444666766655455443
No 74
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=20.43 E-value=95 Score=30.90 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=26.0
Q ss_pred ccCCCHhhHHHHHHhcCCCEEEEeccCcc
Q 007166 422 LSGKKLQKVQPLLKILQPKLVLFPEEWRT 450 (615)
Q Consensus 422 s~haD~~~l~~~i~~l~P~~vilvHG~~~ 450 (615)
..|++..++.+++++.+|+++++.|=...
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~H~~~~ 214 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILTHISHQ 214 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEEecccc
Confidence 36999999999999999999999998653
Done!