Query 007169
Match_columns 615
No_of_seqs 416 out of 2805
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 3.9E-75 1.3E-79 637.5 47.2 461 76-603 19-500 (536)
2 3rix_A Luciferase, luciferin 4 100.0 1.5E-75 5.1E-80 642.8 42.9 469 77-604 18-506 (550)
3 3g7s_A Long-chain-fatty-acid-- 100.0 1.7E-74 5.9E-79 634.2 47.6 465 77-603 17-507 (549)
4 1v25_A Long-chain-fatty-acid-C 100.0 3E-74 1E-78 630.8 46.6 461 79-605 18-502 (541)
5 3etc_A AMP-binding protein; ad 100.0 9.2E-74 3.2E-78 630.8 49.8 464 77-603 54-544 (580)
6 2d1s_A Luciferase, luciferin 4 100.0 4.6E-74 1.6E-78 630.1 46.8 463 77-603 23-507 (548)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.8E-74 9.5E-79 630.8 42.2 457 78-606 24-498 (539)
8 3c5e_A Acyl-coenzyme A synthet 100.0 4.4E-73 1.5E-77 624.5 50.9 461 77-603 36-527 (570)
9 3r44_A Fatty acyl COA syntheta 100.0 2E-73 7E-78 620.8 44.3 456 75-603 12-478 (517)
10 4fuq_A Malonyl COA synthetase; 100.0 1.5E-73 5.2E-78 619.7 42.3 451 83-603 4-465 (503)
11 3o83_A Peptide arylation enzym 100.0 7.4E-74 2.5E-78 628.2 39.9 461 77-605 28-506 (544)
12 1pg4_A Acetyl-COA synthetase; 100.0 2.2E-72 7.6E-77 628.3 47.5 475 76-603 73-586 (652)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.4E-72 1.2E-76 609.7 47.0 448 78-605 1-470 (504)
14 1ry2_A Acetyl-coenzyme A synth 100.0 1.3E-71 4.3E-76 622.5 46.3 467 75-592 78-575 (663)
15 4gr5_A Non-ribosomal peptide s 100.0 1.1E-72 3.8E-77 622.4 36.7 439 76-603 72-536 (570)
16 3ivr_A Putative long-chain-fat 100.0 4.6E-72 1.6E-76 609.7 38.9 450 77-603 4-466 (509)
17 2v7b_A Benzoate-coenzyme A lig 100.0 2.7E-71 9.2E-76 606.5 44.6 460 77-603 22-497 (529)
18 1amu_A GRSA, gramicidin synthe 100.0 1.4E-71 4.9E-76 611.6 42.5 439 76-603 36-494 (563)
19 3e7w_A D-alanine--poly(phospho 100.0 6E-71 2E-75 601.0 42.8 441 79-603 1-468 (511)
20 3fce_A D-alanine--poly(phospho 100.0 2.7E-71 9.4E-76 604.0 40.0 442 79-603 1-469 (512)
21 4dg8_A PA1221; ANL superfamily 100.0 7.6E-71 2.6E-75 611.0 40.0 437 76-602 24-477 (620)
22 3rg2_A Enterobactin synthase c 100.0 3.5E-70 1.2E-74 607.8 44.9 460 77-606 25-501 (617)
23 3l8c_A D-alanine--poly(phospho 100.0 9.8E-71 3.4E-75 601.1 39.5 441 78-603 3-477 (521)
24 3tsy_A Fusion protein 4-coumar 100.0 1.4E-70 4.9E-75 641.9 40.8 468 75-603 57-547 (979)
25 3ipl_A 2-succinylbenzoate--COA 100.0 9.4E-70 3.2E-74 590.4 37.3 450 80-603 2-462 (501)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 4.3E-70 1.5E-74 592.5 31.1 440 77-603 20-473 (505)
27 3kxw_A Saframycin MX1 syntheta 100.0 3.3E-69 1.1E-73 598.4 37.4 456 76-602 8-527 (590)
28 3gqw_A Fatty acid AMP ligase; 100.0 3.4E-67 1.1E-71 580.7 43.7 441 75-590 17-506 (576)
29 3ite_A SIDN siderophore synthe 100.0 5.6E-68 1.9E-72 584.6 36.1 442 76-591 17-477 (562)
30 2vsq_A Surfactin synthetase su 100.0 4.3E-66 1.5E-70 618.9 46.1 441 78-603 463-925 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 8.9E-63 3E-67 533.0 33.6 400 77-543 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.7E-47 1.3E-51 393.2 18.2 272 255-603 36-319 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.3E-44 4.3E-49 385.7 27.4 298 233-592 65-380 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 2.3E-44 7.8E-49 383.8 26.4 308 233-602 70-401 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 3.9E-44 1.3E-48 382.7 28.3 308 233-602 72-405 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.1E-31 1.7E-35 274.2 17.4 237 253-554 88-368 (369)
37 4b2g_A GH3-1 auxin conjugating 99.0 2.1E-08 7.2E-13 107.3 19.2 163 413-601 307-511 (609)
38 4eql_A 4-substituted benzoates 98.9 1.3E-07 4.6E-12 101.0 21.8 130 413-568 302-447 (581)
39 4epl_A Jasmonic acid-amido syn 98.8 1.1E-07 3.9E-12 101.2 16.1 164 411-600 302-500 (581)
40 3lax_A Phenylacetate-coenzyme 98.6 5E-08 1.7E-12 81.3 5.9 50 542-592 1-53 (109)
41 3gxs_A Phenylacetate-coenzyme 98.5 6.7E-08 2.3E-12 80.4 5.5 49 542-591 1-52 (109)
42 2y27_A Phenylacetate-coenzyme 92.9 1.2 4.2E-05 45.9 14.1 123 92-217 88-220 (437)
43 2y4o_A Phenylacetate-coenzyme 92.8 1.3 4.5E-05 45.8 14.1 122 93-217 91-222 (443)
44 3qov_A Phenylacetate-coenzyme 91.4 1.4 4.7E-05 45.5 12.2 121 94-217 86-216 (436)
45 1mdb_A 2,3-dihydroxybenzoate-A 81.1 27 0.00091 36.8 15.4 120 92-217 180-308 (539)
46 3ipl_A 2-succinylbenzoate--COA 79.6 30 0.001 35.9 15.0 119 92-216 161-283 (501)
47 2d1s_A Luciferase, luciferin 4 79.6 13 0.00043 39.5 12.1 119 94-216 192-318 (548)
48 3o83_A Peptide arylation enzym 77.4 24 0.00084 37.2 13.6 120 92-217 189-317 (544)
49 3hgu_A EHPF; phenazine, antibi 76.7 11 0.00036 37.6 10.0 105 92-200 89-220 (369)
50 3r44_A Fatty acyl COA syntheta 76.4 31 0.0011 36.1 14.0 118 93-217 169-294 (517)
51 1t5h_X 4-chlorobenzoyl COA lig 73.5 19 0.00064 37.6 11.3 119 92-216 151-281 (504)
52 3rg2_A Enterobactin synthase c 72.8 58 0.002 34.9 15.3 119 93-217 183-312 (617)
53 3c5e_A Acyl-coenzyme A synthet 72.5 33 0.0011 36.4 13.1 121 92-217 204-332 (570)
54 3ivr_A Putative long-chain-fat 72.0 55 0.0019 34.0 14.6 118 92-216 158-281 (509)
55 4gs5_A Acyl-COA synthetase (AM 71.5 16 0.00053 36.3 9.6 119 90-216 33-157 (358)
56 3e7w_A D-alanine--poly(phospho 71.2 33 0.0011 35.8 12.5 120 92-216 141-269 (511)
57 1v25_A Long-chain-fatty-acid-C 70.4 30 0.001 36.4 12.1 122 92-216 174-302 (541)
58 3fce_A D-alanine--poly(phospho 69.8 22 0.00076 37.1 10.8 121 92-217 142-271 (512)
59 3rix_A Luciferase, luciferin 4 69.6 26 0.00091 36.9 11.5 121 94-217 190-317 (550)
60 1pg4_A Acetyl-COA synthetase; 67.2 32 0.0011 37.3 11.7 122 92-217 254-388 (652)
61 3kxw_A Saframycin MX1 syntheta 67.2 34 0.0012 36.3 11.9 120 92-216 165-298 (590)
62 2cvi_A 75AA long hypothetical 66.0 12 0.0004 28.1 5.6 44 558-602 15-58 (83)
63 3g7s_A Long-chain-fatty-acid-- 65.5 49 0.0017 34.8 12.6 118 94-217 180-306 (549)
64 3ite_A SIDN siderophore synthe 60.4 38 0.0013 35.7 10.5 122 94-217 175-304 (562)
65 2zbc_A 83AA long hypothetical 60.3 14 0.00048 27.5 5.1 43 559-602 16-58 (83)
66 1ry2_A Acetyl-coenzyme A synth 60.1 39 0.0013 36.7 10.7 122 92-217 260-394 (663)
67 3etc_A AMP-binding protein; ad 59.9 38 0.0013 36.0 10.4 121 92-217 223-351 (580)
68 4dg8_A PA1221; ANL superfamily 58.8 64 0.0022 34.6 12.0 120 92-217 162-286 (620)
69 3ni2_A 4-coumarate:COA ligase; 56.5 50 0.0017 34.6 10.5 98 254-359 35-137 (536)
70 4gr5_A Non-ribosomal peptide s 55.3 48 0.0016 35.1 10.2 120 92-217 212-336 (570)
71 3nyq_A Malonyl-COA ligase; A/B 51.4 1.1E+02 0.0038 31.6 12.1 103 92-201 153-259 (505)
72 3t5a_A Long-chain-fatty-acid-- 46.3 1.5E+02 0.0052 30.1 12.2 104 254-359 37-148 (480)
73 3gqw_A Fatty acid AMP ligase; 45.7 80 0.0027 33.2 10.1 120 93-216 175-308 (576)
74 2djw_A Probable transcriptiona 43.8 33 0.0011 26.1 4.9 43 558-601 15-57 (92)
75 1amu_A GRSA, gramicidin synthe 42.5 1.4E+02 0.0048 31.3 11.4 92 254-355 52-148 (563)
76 2v7b_A Benzoate-coenzyme A lig 41.5 45 0.0016 34.8 7.2 105 92-201 181-290 (529)
77 3l8c_A D-alanine--poly(phospho 38.9 2.1E+02 0.007 29.5 11.9 121 93-216 144-273 (521)
78 2fvt_A Conserved hypothetical 38.8 38 0.0013 28.2 4.8 48 552-606 49-96 (135)
79 2cg4_A Regulatory protein ASNC 38.0 66 0.0023 27.0 6.5 44 558-602 82-125 (152)
80 4fuq_A Malonyl COA synthetase; 37.1 1.4E+02 0.0047 30.8 10.1 82 275-357 28-114 (503)
81 3tbh_A O-acetyl serine sulfhyd 36.3 1.3E+02 0.0044 29.3 9.1 66 129-194 61-127 (334)
82 3ffh_A Histidinol-phosphate am 35.9 3E+02 0.01 26.4 13.1 78 135-217 105-194 (363)
83 2rb4_A ATP-dependent RNA helic 34.4 2.1E+02 0.0073 24.2 9.8 88 122-217 21-111 (175)
84 2jgn_A DBX, DDX3, ATP-dependen 33.8 1.3E+02 0.0045 26.1 8.0 89 122-217 32-123 (185)
85 3tsy_A Fusion protein 4-coumar 33.3 98 0.0033 35.3 8.8 96 254-357 74-174 (979)
86 3i4p_A Transcriptional regulat 32.9 73 0.0025 27.2 5.9 44 558-602 79-122 (162)
87 3ju7_A Putative PLP-dependent 32.8 1.1E+02 0.0038 30.2 8.2 61 129-192 69-136 (377)
88 4h1h_A LMO1638 protein; MCCF-l 32.5 1.2E+02 0.0041 29.5 8.0 60 134-193 8-86 (327)
89 2p5v_A Transcriptional regulat 32.2 94 0.0032 26.4 6.6 45 558-603 85-129 (162)
90 2dbb_A Putative HTH-type trans 31.8 91 0.0031 26.0 6.3 42 559-601 83-125 (151)
91 3ist_A Glutamate racemase; str 31.5 1.6E+02 0.0055 27.6 8.5 62 84-152 20-81 (269)
92 2vsq_A Surfactin synthetase su 31.1 1.2E+02 0.0041 35.9 9.2 120 92-217 605-730 (1304)
93 3ezx_A MMCP 1, monomethylamine 31.1 1.4E+02 0.0048 26.9 7.8 53 297-349 93-149 (215)
94 2hjv_A ATP-dependent RNA helic 30.2 2.2E+02 0.0076 23.8 8.7 86 124-217 24-112 (163)
95 1t5i_A C_terminal domain of A 30.2 2E+02 0.0067 24.5 8.4 87 123-217 19-108 (172)
96 2cfx_A HTH-type transcriptiona 29.6 1.2E+02 0.004 25.1 6.6 44 558-602 78-121 (144)
97 1fuk_A Eukaryotic initiation f 29.5 2.5E+02 0.0085 23.5 9.3 86 124-217 19-107 (165)
98 3nra_A Aspartate aminotransfer 28.2 1.9E+02 0.0067 28.3 9.2 53 135-191 123-185 (407)
99 3sr3_A Microcin immunity prote 28.1 81 0.0028 30.8 5.9 60 134-193 9-87 (336)
100 2fi9_A Outer membrane protein; 26.2 95 0.0032 25.5 5.1 46 554-606 52-97 (128)
101 3tla_A MCCF; serine protease, 25.4 1.8E+02 0.0062 28.8 8.0 60 134-193 39-117 (371)
102 4e5s_A MCCFLIKE protein (BA_56 24.4 1.9E+02 0.0065 28.1 7.8 60 134-193 8-86 (331)
103 2cyy_A Putative HTH-type trans 24.1 1.1E+02 0.0036 25.7 5.3 41 559-600 81-121 (151)
104 2e1c_A Putative HTH-type trans 23.7 1.1E+02 0.0036 26.5 5.3 41 559-600 101-141 (171)
105 2gm2_A Conserved hypothetical 23.4 1.4E+02 0.0048 24.6 5.7 47 551-606 47-93 (132)
106 3vc3_A Beta-cyanoalnine syntha 23.3 2.2E+02 0.0075 27.7 8.1 65 130-194 77-142 (344)
107 3euc_A Histidinol-phosphate am 22.8 5E+02 0.017 24.7 13.3 55 135-192 106-164 (367)
108 2e7j_A SEP-tRNA:Cys-tRNA synth 21.9 3.8E+02 0.013 25.5 9.9 55 135-192 90-154 (371)
109 1o69_A Aminotransferase; struc 21.7 2.7E+02 0.0093 27.3 8.7 72 131-205 65-147 (394)
110 3dzz_A Putative pyridoxal 5'-p 21.4 2.5E+02 0.0087 27.1 8.5 55 135-192 106-167 (391)
111 3ri6_A O-acetylhomoserine sulf 20.6 3E+02 0.01 27.6 8.9 23 180-202 141-163 (430)
112 1mdo_A ARNB aminotransferase; 20.2 2.2E+02 0.0076 27.7 7.7 59 130-192 71-134 (393)
113 3ijw_A Aminoglycoside N3-acety 20.0 69 0.0024 30.2 3.4 24 124-147 18-41 (268)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.9e-75 Score=637.45 Aligned_cols=461 Identities=26% Similarity=0.369 Sum_probs=393.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|.++++++||++|+++. ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 19 p~~~~l~~~l~~~a~~~p~~~a~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 91 (536)
T 3ni2_A 19 PKNLPLHSYVLENLSNHSSKPCLING---AN----GDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91 (536)
T ss_dssp CSSCCHHHHHTTTGGGSTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHhhcCCCceEEEEC---CC----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 34589999999999999999999763 21 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .+ .++.++... .....
T Consensus 92 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-----------~~~~~ 158 (536)
T 3ni2_A 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAP-----------DGCLH 158 (536)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCC-----------TTCEE
T ss_pred HHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCC-----------CCccC
Confidence 999999999999999999999999999999999999988777766554332 23 244444321 12356
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc----CcccCCCcEEEEcCChHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h~~~ 311 (615)
++++...... ..+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++.+|++|.++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 237 (536)
T 3ni2_A 159 FSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYA 237 (536)
T ss_dssp THHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHH
T ss_pred HHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHH
Confidence 7777654433 22334567899999999999999999999999999988765543 356789999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 312 RAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 238 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 290 (536)
T 3ni2_A 238 LNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--------------------------- 290 (536)
T ss_dssp HHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC---------------------------
T ss_pred HHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc---------------------------
Confidence 865 567899999999987 799999999999999999999999998865200
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDNLSG 463 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~~~~ 463 (615)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+.+...+
T Consensus 291 ---------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 355 (536)
T 3ni2_A 291 ---------------LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPG 355 (536)
T ss_dssp ---------------GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTT
T ss_pred ---------------cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCC
Confidence 0111125899999999999999999999998 89999999999998665432 22335678
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 356 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR 432 (536)
T 3ni2_A 356 ACGTVVRNAEMKIVDPETGASLPRNQ---PGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDR 432 (536)
T ss_dssp CCCEECSSCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CeeEeCCCcEEEEEeCCCCcCCCCCC---ccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEec
Confidence 99999999999999987788888887 899999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++. .++++++++++
T Consensus 433 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~ 500 (536)
T 3ni2_A 433 LKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQ 500 (536)
T ss_dssp CSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 9999997 8999999999999999999999999996644 4789999864 47899999865
No 2
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.5e-75 Score=642.75 Aligned_cols=469 Identities=23% Similarity=0.325 Sum_probs=344.8
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.++++++|+++|++... ++. ..+++||+||.++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 18 ~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 93 (550)
T 3rix_A 18 EDGTAGEQLHKAMKRYALVPGTIAFT--DAH--IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 93 (550)
T ss_dssp CCSCHHHHHHHHHHHHHTSTTCEEEE--ETT--TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCceEEEee--ecC--CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHH
Confidence 34799999999999999999986331 221 12579999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++..... ....++
T Consensus 94 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 164 (550)
T 3rix_A 94 GALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDY---------QGFQSM 164 (550)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCB---------TTBCBH
T ss_pred HHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccc---------cCcccH
Confidence 99999999999999999999999999999999999999888888877778888888877653211 123456
Q ss_pred HHHHhcCccC------CCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCChH
Q 007169 237 SNLLSQGRSN------LQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLA 307 (615)
Q Consensus 237 ~~l~~~~~~~------~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~ 307 (615)
.++....... ..+.....++|+++|+|||||||.||||++||++++..+...... .++.++|++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 244 (550)
T 3rix_A 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFH 244 (550)
T ss_dssp HHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTT
T ss_pred HHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHH
Confidence 6665432221 111122345789999999999999999999999999887766554 5678999999999999
Q ss_pred HHHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 308 HIYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 308 h~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
|.+++...+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+...
T Consensus 245 ~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 300 (550)
T 3rix_A 245 HGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL------------------------ 300 (550)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG------------------------
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc------------------------
Confidence 9999988888999999999987 799999999999999999999999998876210
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCc-cccccccccccccccccCCCCCCCCCc
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGR-VTEGYGMTETSCLISQLDEGDNLSGHV 465 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~-v~~~YG~TE~~~~~~~~~~~~~~~~~v 465 (615)
......++||.+++||+++++++.+++++.|++. ++++||+||+++.++.....+...+++
T Consensus 301 ------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~v 362 (550)
T 3rix_A 301 ------------------IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV 362 (550)
T ss_dssp ------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTEE
T ss_pred ------------------ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCCCCCCCCc
Confidence 0011125899999999999999999999999875 899999999998877776666788999
Q ss_pred CCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCC
Q 007169 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKK 545 (615)
Q Consensus 466 G~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~ 545 (615)
|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+|
T Consensus 363 G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d 439 (550)
T 3rix_A 363 GKVVPFFEAKVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK 439 (550)
T ss_dssp EEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred ccccCCcEEEEEeCCCCcCCCCCC---CeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence 999999999999988888888887 89999999999999999999999999999999999999999999999999999
Q ss_pred CeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHcC
Q 007169 546 NIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASEG 604 (615)
Q Consensus 546 d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~~ 604 (615)
|+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++.+ +++.++++++-
T Consensus 440 d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l 506 (550)
T 3rix_A 440 SLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 506 (550)
T ss_dssp --------------------------------------------------------------------
T ss_pred heeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 99997 8999999999999999999999999997754 57888888643 56777777643
No 3
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.7e-74 Score=634.19 Aligned_cols=465 Identities=23% Similarity=0.328 Sum_probs=386.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCc--cCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGT--VGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
+..|+.++|.++++++||++|+.+. ++. .+..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 93 (549)
T 3g7s_A 17 PKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMT 93 (549)
T ss_dssp CCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHH
Confidence 4578999999999999999999886 421 23346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++|||++.++.+++.+++++++++++|++....+.+.......+ ++.++.++.. ..
T Consensus 94 ~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~ 158 (549)
T 3g7s_A 94 IYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE--------------VN 158 (549)
T ss_dssp HHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS--------------SS
T ss_pred HHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC--------------Cc
Confidence 99999999999999999999999999999999999999988887777665544 5566665531 24
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
+++++...+...........++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~ 238 (549)
T 3g7s_A 159 SLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGL 238 (549)
T ss_dssp CHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHH
T ss_pred CHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH
Confidence 56777665443222222223489999999999999999999999999999888877788999999999999999999888
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.++..|+++++.+ +++..+++.++++++|+++++|+++..+++.......
T Consensus 239 ~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 291 (549)
T 3g7s_A 239 VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK--------------------------- 291 (549)
T ss_dssp HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC---------------------------
T ss_pred HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc---------------------------
Confidence 777899999999987 8999999999999999999999999998874321100
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHH----hC---CccccccccccccccccccCCCC-CCCCCc
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKIC----FG---GRVTEGYGMTETSCLISQLDEGD-NLSGHV 465 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~----~g---~~v~~~YG~TE~~~~~~~~~~~~-~~~~~v 465 (615)
....+++|.+++||+++++++.+++.+. ++ +++++.||+||++.+++...... ...+++
T Consensus 292 -------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 358 (549)
T 3g7s_A 292 -------------TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQ 358 (549)
T ss_dssp -------------CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSC
T ss_pred -------------cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCc
Confidence 0011589999999999999999999887 66 88999999999998776654433 567899
Q ss_pred CCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC--CCC--eeecccEEEEecCCcEEEE
Q 007169 466 GSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID--EDG--WFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 466 G~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~--~~g--w~~TGDlg~~~~dG~l~i~ 541 (615)
|.|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++|+||+|+|+
T Consensus 359 G~p~~~~~~~i~d~~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~ 435 (549)
T 3g7s_A 359 GVPMSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQ 435 (549)
T ss_dssp CEECTTCEEEEECSSSCCEECTTC---CEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEE
T ss_pred cccCCCCEEEEEeCCCCcCCCCCC---ceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEe
Confidence 999999999999988888888887 899999999999999999999999983 677 9999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC--------HHHHHHHHHHc
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD--------QDALKAWAASE 603 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~--------~~~l~~~~~~~ 603 (615)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++ .++++++++++
T Consensus 436 GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~ 507 (549)
T 3g7s_A 436 DRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRER 507 (549)
T ss_dssp EEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTT
T ss_pred ccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHh
Confidence 999999997 8999999999999999999999999997754 4788999864 36889999865
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3e-74 Score=630.81 Aligned_cols=461 Identities=25% Similarity=0.322 Sum_probs=371.5
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
.|+.++|.++++++||++|+.+. +. +..+++||+||+++++++|++|+++|+++||+|+|+++|+++|++++|||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 68999999999999999999864 21 23467999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|+++||+++.++.+++.+++++++++++|++.+..+.+......++.++.++.++.... . ....|++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~~~~ 162 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--------E--GYLAYEE 162 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCC--------T--TCEEHHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCC--------c--ccccHHH
Confidence 99999999999999999999999999999999999887777776666777777777654221 0 1246666
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh--ccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA--TLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~--~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
+...... .....++++++|+|||||||.||||++||+++++..... ...+++.++|++++++|++|.+++...+
T Consensus 163 ~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 238 (541)
T 1v25_A 163 ALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY 238 (541)
T ss_dssp HCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHH
T ss_pred HhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHH
Confidence 6543221 134567899999999999999999999999998876653 3446788999999999999999987777
Q ss_pred HHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCC
Q 007169 317 MTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPS 394 (615)
Q Consensus 317 ~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 394 (615)
.+++.|+++++.+ .++..+++.++++++|+++++|+++..|++......
T Consensus 239 ~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------------- 289 (541)
T 1v25_A 239 AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------------- 289 (541)
T ss_dssp HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----------------------------
Confidence 8899999999986 599999999999999999999999999877422110
Q ss_pred chhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-----------CCCC
Q 007169 395 PMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-----------NLSG 463 (615)
Q Consensus 395 ~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-----------~~~~ 463 (615)
...++||.+++||+++++++.+++ +.+|++++++||+||++.+++...... ...+
T Consensus 290 -------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (541)
T 1v25_A 290 -------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKA 355 (541)
T ss_dssp -------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHT
T ss_pred -------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCccccccccC
Confidence 011589999999999999999999 567999999999999987666543321 1347
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCC-CCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~-~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
++|+|+++++++|+| ++++.++. +. +.|||+|+|++++.|||++|+.|++.|..+|||+|||+|++|+||+|+|+|
T Consensus 356 ~~G~p~~~~~~~i~d-~~g~~~~~~~~--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 356 KTGLPIPLVRLRVAD-EEGRPVPKDGK--ALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp SCBEECTTCEEEEEC-TTSCBCCSSSC--CCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEE
T ss_pred CCCCcCCCcEEEEEC-CCCCCCCCCCC--cceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEee
Confidence 899999999999999 55666653 22 279999999999999999999999999879999999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCC
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGI 605 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~~ 605 (615)
|+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.++++++.+
T Consensus 433 R~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L 502 (541)
T 1v25_A 433 RLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGF 502 (541)
T ss_dssp ESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CC
T ss_pred cccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccC
Confidence 99999996 9999999999999999999999999998764 5789999864 3567788877444
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.2e-74 Score=630.85 Aligned_cols=464 Identities=19% Similarity=0.254 Sum_probs=395.0
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.++..+++|+++++++||++|+.+. +.. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++|++++|
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~l 129 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCML 129 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4556669999999999999999875 322 345789999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch--HHHHhhhccCCCc-eEEEEECCCCCCCCCCCcCCCceE
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL--NSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQI 233 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~ 233 (615)
||+++|+++||+++.++.+++.+++++++++++|++.+.. +.+.+....++.+ ..++.++... ...+
T Consensus 130 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 199 (580)
T 3etc_A 130 GLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDV----------LEGW 199 (580)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSC----------CTTC
T ss_pred HHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCcc----------cccc
Confidence 9999999999999999999999999999999999988755 5555555555554 5566665421 1124
Q ss_pred eeHHHHHhcCccCCCCC---CCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHH
Q 007169 234 LTYSNLLSQGRSNLQPF---SPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIY 310 (615)
Q Consensus 234 ~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~ 310 (615)
.++.+...........+ ....++|+++|+|||||||.||||+++|.+++..+.......++.+++++++.+|++|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 66777665443322211 246789999999999999999999999999988877766667889999999999999998
Q ss_pred HHHH-HHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 311 ERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 311 ~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
+... .+.++..|+++++++ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------------- 334 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------------- 334 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-------------------------
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-------------------------
Confidence 8775 566889999998873 79999999999999999999999998886510
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
......++||.+++||+++++++.+++++.+|++++++||+||++..++.........+++|
T Consensus 335 ------------------~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G 396 (580)
T 3etc_A 335 ------------------LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIG 396 (580)
T ss_dssp ------------------C---CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTSCCCTTCCB
T ss_pred ------------------cccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCCCCCCCCCccc
Confidence 00011258999999999999999999999999999999999999877666555567789999
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec-----CcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG-----PLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg-----~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~ 541 (615)
+|+|+++++|+| ++++.++.|+ .|||+|+| ++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+
T Consensus 397 ~p~~~~~v~ivd-~~g~~~~~g~---~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~ 471 (580)
T 3etc_A 397 KPTPGYKIELMD-RDGRLCEVGE---EGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471 (580)
T ss_dssp EECTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEC-CCCCCCCCCC---ceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEE
Confidence 999999999999 5678888887 89999997 789999999999999999 6999999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHHHHHHHHc
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++
T Consensus 472 GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~ 544 (580)
T 3etc_A 472 GRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNV 544 (580)
T ss_dssp EESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred ecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhh
Confidence 999999997 7999999999999999999999999997755 47889998753 4688888875
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.6e-74 Score=630.07 Aligned_cols=463 Identities=23% Similarity=0.318 Sum_probs=391.9
Q ss_pred CCCCHHH-HHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHD-NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...|+.+ +|.++++++ |++|+.+. ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 23 ~~~~l~~~~l~~~~~~~-~~~A~~~~---~~----~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 94 (548)
T 2d1s_A 23 GSAGTQLRKYMERYAKL-GAIAFTNA---VT----GVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPV 94 (548)
T ss_dssp SCHHHHHHHHHHHHHHH-TCEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CcCcHHHHHHHhhhccc-CCceEEEc---CC----CCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Confidence 3468999 899999999 99999753 11 146999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
+||+++|++++|+++.++.+++.+++++++++++|++....+.+......++....++.++.... .. .+..
T Consensus 95 la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~ 165 (548)
T 2d1s_A 95 IAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD-------YR--GYQC 165 (548)
T ss_dssp HHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC-------BT--TBCB
T ss_pred HHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc-------cc--cccc
Confidence 99999999999999999999999999999999999999887777666555555556666543210 00 1245
Q ss_pred HHHHHhcCccCCCCCCCCC-----C-CCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCCh
Q 007169 236 YSNLLSQGRSNLQPFSPPK-----P-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPL 306 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl 306 (615)
|+++...+.....+..... + +|+++|+|||||||.||||++||+++++.+...... +++.++|++++++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 245 (548)
T 2d1s_A 166 LDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPF 245 (548)
T ss_dssp HHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCT
T ss_pred HHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccH
Confidence 7777654321101111122 4 899999999999999999999999999988877665 678899999999999
Q ss_pred HHHHHHHHHH-HHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 307 AHIYERANQV-MTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 307 ~h~~~~~~~~-~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
+|.+++...+ .++ .|+++++.+ +++..+++.|+++++|+++++|+++..+.+...
T Consensus 246 ~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 302 (548)
T 2d1s_A 246 HHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL---------------------- 302 (548)
T ss_dssp TSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC----------------------
T ss_pred HHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc----------------------
Confidence 9999987744 556 999999887 799999999999999999999999998865200
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (615)
......+++|.+++||+++++++.+++++.| +++++++||+||++..++.........+
T Consensus 303 --------------------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 362 (548)
T 2d1s_A 303 --------------------LNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPG 362 (548)
T ss_dssp --------------------GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTTCCCTT
T ss_pred --------------------cccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcccCCCC
Confidence 0001125899999999999999999999998 6889999999999877666544456778
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEcc
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|+|+|+++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||
T Consensus 363 ~~G~~~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR 439 (548)
T 2d1s_A 363 ASGKVVPLFKAKVIDLDTKKSLGPNR---RGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDR 439 (548)
T ss_dssp CCBEECTTCEEEEECTTTCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEE
T ss_pred CCCccCCCceEEEEeCCcCccCCCCC---CeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecc
Confidence 99999999999999987888888887 899999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 544 KKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 544 ~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .++++++++++
T Consensus 440 ~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~ 507 (548)
T 2d1s_A 440 LKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507 (548)
T ss_dssp GGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT
T ss_pred ccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHh
Confidence 9999997 9999999999999999999999999998754 4788999864 46889999864
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.8e-74 Score=630.82 Aligned_cols=457 Identities=21% Similarity=0.257 Sum_probs=384.7
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..|+.++|.++++++||++|+.+. + +++||+||+++++++|++|.++|+++||+|+|+++|+++|+++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCce
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQ 232 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~ 232 (615)
|+++|+++||+++.++.+++.+++++++++++|++.... ..+......++.++.++..+...
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 999999999999999999999999999999999987532 22233333456666666554311
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYER 312 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~ 312 (615)
.+.++...... ........++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++
T Consensus 162 --~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 162 --EFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp --TSEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred --chhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 01112211111 112234578999999999999999999999999999988877777888999999999999999998
Q ss_pred HH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 313 AN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 313 ~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
.. .+.+++.|+++++.+ +++..+++.++++++|++.++|+++..+++.....
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------- 293 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR------------------------- 293 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc-------------------------
Confidence 74 677899999999987 79999999999999999999999999987642110
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC-CCCCCCcCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG-DNLSGHVGSP 468 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p 468 (615)
....++||.+++||+++++++.+++++.+|++++++||+||++..++..... ....+++|+|
T Consensus 294 -----------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p 356 (539)
T 1mdb_A 294 -----------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKP 356 (539)
T ss_dssp -----------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEE
T ss_pred -----------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcc
Confidence 0011589999999999999999999998999999999999975433321111 1234789999
Q ss_pred CCC-eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCe
Q 007169 469 NAA-CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNI 547 (615)
Q Consensus 469 ~~~-~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ 547 (615)
+++ .+++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+
T Consensus 357 ~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ 432 (539)
T 1mdb_A 357 MSPYDESRVWD-DHDRDVKPGE---TGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ 432 (539)
T ss_dssp SSTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGC
T ss_pred cCCCceEEEEC-CCCCCCcCCC---cceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccce
Confidence 975 5899999 6677788887 8999999999999999999999999988999999999999999999999999999
Q ss_pred EEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC-----HHHHHHHHHHcCCC
Q 007169 548 FKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD-----QDALKAWAASEGIQ 606 (615)
Q Consensus 548 ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~-----~~~l~~~~~~~~~~ 606 (615)
||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++++++++++
T Consensus 433 ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~ 498 (539)
T 1mdb_A 433 INR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLA 498 (539)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCC
T ss_pred EEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 995 9999999999999999999999999997654 4789999864 57899999987664
No 8
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.4e-73 Score=624.52 Aligned_cols=461 Identities=18% Similarity=0.233 Sum_probs=392.9
Q ss_pred CCCCHHHHHHHHHHh-----cCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHh
Q 007169 77 EIGTTHDNFVRAVDT-----FRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPE 150 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e 150 (615)
..+++.++|++.+++ +||++|+.+. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|+++
T Consensus 36 ~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e 111 (570)
T 3c5e_A 36 KFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE 111 (570)
T ss_dssp BCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH
T ss_pred cccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH
Confidence 345678999999999 9999999875 322 2246799999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCC
Q 007169 151 WLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTG 230 (615)
Q Consensus 151 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~ 230 (615)
|++++|||+++|+++||+++.++.+++.+++++++++++|++....+.+......++.++.++.++.... .
T Consensus 112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~- 182 (570)
T 3c5e_A 112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSC--------D- 182 (570)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCC--------T-
T ss_pred HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCc--------c-
Confidence 9999999999999999999999999999999999999999999888877776667777777777754210 0
Q ss_pred ceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHH--HHHhhccCcccCCCcEEEEcCChHH
Q 007169 231 VQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIA--SVAGATLGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 231 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~--~~~~~~~~~~~~~~d~~l~~lPl~h 308 (615)
....++++....... .+.....++|+++|+|||||||.||||++||+ ++. ..... ..+++.++|++++.+|++|
T Consensus 183 -~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~ 258 (570)
T 3c5e_A 183 -GWLNFKKLLNEASTT-HHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDTGW 258 (570)
T ss_dssp -TSEEHHHHHHHSCSC-CCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCTTS
T ss_pred -ccccHHHHhhccccc-ccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCchHH
Confidence 134677776543321 22234578999999999999999999999999 554 44444 5678899999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 309 IYERAN-QVMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
.+++.. .+.++..|+++++.+ +++..+++.++++++|+++++|++++.+.+. .
T Consensus 259 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---~-------------------- 315 (570)
T 3c5e_A 259 ILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---D-------------------- 315 (570)
T ss_dssp HHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS---C--------------------
T ss_pred HHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc---c--------------------
Confidence 999874 667899999999885 6999999999999999999999999988652 0
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGH 464 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~ 464 (615)
......+++|.+++||+++++++.+++++.+|++++++||+||++..++.........++
T Consensus 316 --------------------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~ 375 (570)
T 3c5e_A 316 --------------------LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTMKIKPGY 375 (570)
T ss_dssp --------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTC
T ss_pred --------------------ccccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceecCcccccCCCc
Confidence 000012589999999999999999999998999999999999998766554444567789
Q ss_pred cCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEe-----cCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEE
Q 007169 465 VGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVR-----GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLK 539 (615)
Q Consensus 465 vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vr-----g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~ 539 (615)
+|+|+++++++|+| ++++.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+
T Consensus 376 vG~p~~~~~v~i~d-~~g~~~~~G~---~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~ 450 (570)
T 3c5e_A 376 MGTAASCYDVQIID-DKGNVLPPGT---EGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQ 450 (570)
T ss_dssp CCEECTTCCEEEEC-TTSCBCCTTC---CEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEE
T ss_pred ccccCCCceEEEEC-CCCCCCCCCC---CCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEE
Confidence 99999999999999 6678888887 8999999 9999999999999999999 68999999999999999999
Q ss_pred EEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----------HHHHHHHHHc
Q 007169 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----------DALKAWAASE 603 (615)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----------~~l~~~~~~~ 603 (615)
|+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++++ ++++++++++
T Consensus 451 ~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~ 527 (570)
T 3c5e_A 451 FMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSV 527 (570)
T ss_dssp EEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhh
Confidence 99999999996 8999999999999999999999999997654 47889999753 4577788764
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2e-73 Score=620.78 Aligned_cols=456 Identities=19% Similarity=0.251 Sum_probs=382.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+...|+.++|.++++++|+++|+++. +. .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 456789999999999999999999864 22 24699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+....++.+.. ..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 149 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---------------AD 149 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE---------------HH
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC---------------cc
Confidence 999999999999999999999999999999999999998887776665544332221111110 01
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
.+.+....... ..+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++..
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 228 (517)
T 3r44_A 150 SLAERLRSAAA-DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTT 228 (517)
T ss_dssp HHHHHHHHCCC-CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHH
T ss_pred cHHHHhhccCc-CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHH
Confidence 23344332222 22334567899999999999999999999999999999988887789999999999999999999987
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.+++.|+++++.+ +++..+++.++++++|++.++|++++.+.+...
T Consensus 229 ~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------------- 277 (517)
T 3r44_A 229 VIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPE------------------------------- 277 (517)
T ss_dssp HHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH-------------------------------
T ss_pred HHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-------------------------------
Confidence 666666999999887 799999999999999999999999998876311
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCCCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAA 471 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~ 471 (615)
......+++|.+++||+++++++.++++.. +++++++||+||+++.++..... ....+++|+|.++
T Consensus 278 -----------~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~ 345 (517)
T 3r44_A 278 -----------FAELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMF 345 (517)
T ss_dssp -----------HHHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTT
T ss_pred -----------cccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCCCCCcCCCC
Confidence 111122589999999999999999999987 99999999999998766544332 3567899999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (615)
++++|+| +++..++.| .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 346 ~~~~i~d-~~~~~~~~g----~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 418 (517)
T 3r44_A 346 TDVAVRG-DDGVIREHG----EGEVVIKSDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIIS- 418 (517)
T ss_dssp EEEEEEC-TTSCEESSE----EEEEEEEETTSCSEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEECGGGCEEE-
T ss_pred eEEEEEC-CCCCCCCCC----CeEEEEeCcchhhhhCCChhhhHhhh-cCCCEecceeEEEcCCeeEEEecCCcCEEEE-
Confidence 9999999 444544444 59999999999999999999999999 7999999999999999999999999999996
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe-----CHHHHHHHHHHc
Q 007169 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV-----DQDALKAWAASE 603 (615)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~-----~~~~l~~~~~~~ 603 (615)
+|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+. ++++++++++++
T Consensus 419 ~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~ 478 (517)
T 3r44_A 419 GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTR 478 (517)
T ss_dssp TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999997654 356777753 357899999875
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.5e-73 Score=619.65 Aligned_cols=451 Identities=26% Similarity=0.347 Sum_probs=379.2
Q ss_pred HHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcC
Q 007169 83 DNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYS 162 (615)
Q Consensus 83 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 162 (615)
++|.+.++++|+++++.... ++ .+++||+||.++++++|++|.+.|+++||+|+|+++|+++|+++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AA----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 46888999999999998641 11 1469999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHHHHhc
Q 007169 163 FISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSNLLSQ 242 (615)
Q Consensus 163 ~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (615)
+++||+++.++.+++.+++++++++++|++....+.+......... .++.++.... ..+.+....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~~~~ 142 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGR-------------GSLTDAAAG 142 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSC-------------SHHHHHHHT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCcc-------------cccchhhhc
Confidence 9999999999999999999999999999998766554443332221 3333332110 112222222
Q ss_pred CccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-HHHHHHh
Q 007169 243 GRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN-QVMTVYS 321 (615)
Q Consensus 243 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~ 321 (615)
.. .........++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++.. .+.+++.
T Consensus 143 ~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 AS-EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp SC-SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred CC-CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 11 122334567899999999999999999999999999999888888889999999999999999998765 5678899
Q ss_pred CcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHH
Q 007169 322 GVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRL 400 (615)
Q Consensus 322 G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 400 (615)
|+++++.+ +++..+++.++ ++|+++++|+++..+++...
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------------- 261 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------------- 261 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------------
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------------
Confidence 99999887 79999999998 89999999999998865200
Q ss_pred hHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecC
Q 007169 401 VFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVP 480 (615)
Q Consensus 401 ~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~ 480 (615)
......+++|.+++||+++++++.+.+.+.+|+++++.||+||++..++.....+...+++|+|+++++++|+|++
T Consensus 262 ----~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 337 (503)
T 4fuq_A 262 ----LTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPE 337 (503)
T ss_dssp ----CSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTT
T ss_pred ----ccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECC
Confidence 0011125899999999999999999999999999999999999987765544455677899999999999999988
Q ss_pred CCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHH
Q 007169 481 EMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEK 560 (615)
Q Consensus 481 ~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~ 560 (615)
+++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|
T Consensus 338 ~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~e 413 (503)
T 4fuq_A 338 TGKELPRGD---IGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT-GGFNVYPKE 413 (503)
T ss_dssp TCCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-TTEEECHHH
T ss_pred CCCCCcCCC---ceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-CCEEECHHH
Confidence 888888887 8999999999999999999999999988999999999999999999999999999997 899999999
Q ss_pred HHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 561 IENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 561 IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
||++|.+||+|.+++|+|.+++ +.++|+|+++ .+++.++++++
T Consensus 414 IE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 465 (503)
T 4fuq_A 414 IESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465 (503)
T ss_dssp HHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT
T ss_pred HHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 9999999999999999997654 4788999874 46788888754
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=7.4e-74 Score=628.15 Aligned_cols=461 Identities=18% Similarity=0.218 Sum_probs=339.6
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|.++++++||++|+.+. + +.+||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 98 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFF 98 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
Confidence 3478999999999999999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|++++|+++.++.+++.+++++++++++|++.... ..+.......+....++.++....
T Consensus 99 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 167 (544)
T 3o83_A 99 ALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT----------- 167 (544)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT-----------
T ss_pred HHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc-----------
Confidence 9999999999999999999999999999999999987653 333333334455666666654211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
...+.++.........+.....++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 246 (544)
T 3o83_A 168 -DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFM 246 (544)
T ss_dssp -SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEee
Confidence 1345555544333223334567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Q 007169 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (615)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (615)
+.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+++......
T Consensus 247 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 303 (544)
T 3o83_A 247 LSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK----------------------- 303 (544)
T ss_dssp HHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-----------------------
T ss_pred cchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc-----------------------
Confidence 874 667899999999987 799999999999999999999999999877421100
Q ss_pred cCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 007169 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (615)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (615)
...++||.+++||+++++++.+++++.+|+++++.||+||++..++.....+ ...+++|+
T Consensus 304 -------------------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~ 364 (544)
T 3o83_A 304 -------------------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGR 364 (544)
T ss_dssp -------------------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCE
T ss_pred -------------------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhhccCCCce
Confidence 0015899999999999999999999999999999999999875544332221 23468999
Q ss_pred CC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 468 p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
|+ ++++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+||
T Consensus 365 p~~~~~~~~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd 440 (544)
T 3o83_A 365 PISSDDEIKIVD-EQYREVPEGE---IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKD 440 (544)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-
T ss_pred ecCCCcEEEEEC-CCCCCCCCCC---eeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCC
Confidence 96 899999999 7778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-----HHHHHHHHHcCC
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-----DALKAWAASEGI 605 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-----~~l~~~~~~~~~ 605 (615)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++.+ ++++++++++.+
T Consensus 441 ~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l 506 (544)
T 3o83_A 441 QINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGI 506 (544)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCC
Confidence 9995 9999999999999999999999999997654 57889998753 456677766444
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.2e-72 Score=628.29 Aligned_cols=475 Identities=17% Similarity=0.263 Sum_probs=391.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
...++++++|+++++++||++|+++. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++
T Consensus 73 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~ 149 (652)
T 1pg4_A 73 GTLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAM 149 (652)
T ss_dssp CEECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHH
T ss_pred CChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34577899999999999999999875 332334578999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch---------HHHHhhhccCC--CceEEEEECCCCCCCCC
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVP--TVRLIVVIGGIDDQIPS 224 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~--~l~~ii~~~~~~~~~~~ 224 (615)
|||+++|++++|+++.++++++.+++++++++++|++.... +.+.+.....+ .++.+++++.......
T Consensus 150 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~- 228 (652)
T 1pg4_A 150 LACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID- 228 (652)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-
T ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-
Confidence 99999999999999999999999999999999999987542 23333333332 4667777764321110
Q ss_pred CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHH-hhccCcccCCCcEEEEc
Q 007169 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVA-GATLGTKFYPSDVYISY 303 (615)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~-~~~~~~~~~~~d~~l~~ 303 (615)
. .. .....|++++..... ..+.....++|+++|+|||||||.||||++||++++..+. .....+++.++|+++++
T Consensus 229 ~--~~-~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~ 304 (652)
T 1pg4_A 229 W--QE-GRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304 (652)
T ss_dssp C--CB-TTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred c--cC-CCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEc
Confidence 0 00 123578888764322 1223345689999999999999999999999999887654 33445788999999999
Q ss_pred CChHHHHHHH-HHHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHH
Q 007169 304 LPLAHIYERA-NQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (615)
Q Consensus 304 lPl~h~~~~~-~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (615)
+|++|+++.. ..+.+|+.|+++++++ .++..+++.|+++++|+++++|++++.|.+.....
T Consensus 305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~------------- 371 (652)
T 1pg4_A 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA------------- 371 (652)
T ss_dssp SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG-------------
T ss_pred cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc-------------
Confidence 9999999985 4678999999999986 37899999999999999999999999886521000
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Cccccccccccccccccc
Q 007169 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~ 454 (615)
.+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 372 ---------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 424 (652)
T 1pg4_A 372 ---------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT 424 (652)
T ss_dssp ---------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBC
T ss_pred ---------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceec
Confidence 01111268999999999999999999999888 899999999999876665
Q ss_pred cCCC--CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEec--CcccccccCChhhhhhccC--CCCeeeccc
Q 007169 455 LDEG--DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHTGD 528 (615)
Q Consensus 455 ~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~--~~gw~~TGD 528 (615)
..+. ....+++|+|+++++++|+| ++++.++.|. .|||+|+| |++++|||++|+.+.+.|. .+|||+|||
T Consensus 425 ~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~---~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGD 500 (652)
T 1pg4_A 425 PLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGAT---EGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGD 500 (652)
T ss_dssp CCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSE---EEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEE
T ss_pred CCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCc---eEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCc
Confidence 5432 35678999999999999999 5667777766 89999999 7999999999999988762 489999999
Q ss_pred EEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH---------HHH
Q 007169 529 IGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ---------DAL 596 (615)
Q Consensus 529 lg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~---------~~l 596 (615)
+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++++ +++
T Consensus 501 lg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l 579 (652)
T 1pg4_A 501 GARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEV 579 (652)
T ss_dssp EEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHH
T ss_pred EEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHH
Confidence 9999999999999999999998 8999999999999999999999999997654 47999999753 467
Q ss_pred HHHHHHc
Q 007169 597 KAWAASE 603 (615)
Q Consensus 597 ~~~~~~~ 603 (615)
+++++++
T Consensus 580 ~~~l~~~ 586 (652)
T 1pg4_A 580 RNWVRKE 586 (652)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888765
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.4e-72 Score=609.72 Aligned_cols=448 Identities=20% Similarity=0.255 Sum_probs=371.2
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
++|+.++|+++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+|+++|+++|+++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 468999999999999999999753 211 5699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEE--cccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFC--VPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~--~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|+++|++++|+++.++.+++.+++++++++++|+ +....+.+... .+.++ ++ .
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~-~~---------------------~ 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQS---GSGAR-II---------------------F 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHH---CCCCE-EE---------------------E
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhc---cccce-eE---------------------E
Confidence 9999999999999999999999999999999999 66554444121 12222 22 2
Q ss_pred HHHHHhcCc----cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCccc--CCCcEEEEcCChHHH
Q 007169 236 YSNLLSQGR----SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKF--YPSDVYISYLPLAHI 309 (615)
Q Consensus 236 ~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~--~~~d~~l~~lPl~h~ 309 (615)
++++...+. ....+.....++|+++|+|||||||.||||++||+++.+.+......+++ .++|++++.+|++|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 208 (504)
T 1t5h_X 129 LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHV 208 (504)
T ss_dssp GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSH
T ss_pred ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhc
Confidence 222222110 11111234568999999999999999999999999999988877766777 889999999999999
Q ss_pred HHHH-HHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 310 YERA-NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 310 ~~~~-~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
+++. ..+.+++.|+++++.+ +++..+++.++++++|+++++|+++..+.+......
T Consensus 209 ~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 266 (504)
T 1t5h_X 209 VGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAG---------------------- 266 (504)
T ss_dssp HHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTT----------------------
T ss_pred chHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccc----------------------
Confidence 9985 4677899999999987 799999999999999999999999999876310000
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGS 467 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 467 (615)
.....++||.+++||+++++++.+++++.+++.+++.||+||++. +.... ....+++|.
T Consensus 267 ------------------~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~-~~~~~--~~~~~~~g~ 325 (504)
T 1t5h_X 267 ------------------SSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMN-SLYMR--QPKTGTEMA 325 (504)
T ss_dssp ------------------CCCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEE-EEEEE--SCSSSSEEB
T ss_pred ------------------ccccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeeccccccc-ccccc--CCCCCcccc
Confidence 000115899999999999999999999999999999999999943 22221 345688999
Q ss_pred CCCCeeEEEeecCCC--CCCCCCCCCCcceEEEe-cCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC
Q 007169 468 PNAACEIKLVDVPEM--NYTSEDQPCPRGEICVR-GPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 468 p~~~~ev~ivd~~~~--~~~~~~~~~~~GEi~vr-g~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (615)
|.++++++|+|.++. +.++.|+ .|||+|+ |++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+
T Consensus 326 p~~~~~~~i~~~~~~~~~~~~~g~---~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~g~~~TGDlg~~~~dG~l~~~GR~ 401 (504)
T 1t5h_X 326 PGFFSEVRIVRIGGGVDEIVANGE---EGELIVAASDSAFVGYLNQPQATAEKL-QDGWYRTSDVAVWTPEGTVRILGRV 401 (504)
T ss_dssp CCTTCCEEEECTTSCTTCBCCTTC---CEEEEEECCTTSCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred CCCCCceeEEeccCCCCCcCCCCC---cceEEEeCCceeeceecCCchhhhhhh-cCCccccCcEEEECCCceEEEeCcc
Confidence 999999999995432 6667776 8999999 9999999999999999999 7999999999999999999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHcCC
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASEGI 605 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~~~ 605 (615)
||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|+++ .+++.+||+++.+
T Consensus 402 dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L 470 (504)
T 1t5h_X 402 DDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL 470 (504)
T ss_dssp GGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSC
T ss_pred cCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccC
Confidence 999996 9999999999999999999999999998764 5799999974 4689999987444
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.3e-71 Score=622.46 Aligned_cols=467 Identities=18% Similarity=0.227 Sum_probs=386.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHhHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLI-YHGISKGSCIGLYFVNRPEWLI 153 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gv~~gd~V~i~~~n~~e~~~ 153 (615)
....++++++|.++++++||++|+++. +...+..+++||+||.+++.++|++|+ ++|+++||+|+|+++|++||++
T Consensus 78 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~ 154 (663)
T 1ry2_A 78 NGQLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154 (663)
T ss_dssp TCEECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHH
T ss_pred CCCccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHH
Confidence 345678999999999999999999875 332334578999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch---------HHHHhhhccCCCceEEEEECCCCCCCCC
Q 007169 154 VDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL---------NSLLSCLSEVPTVRLIVVIGGIDDQIPS 224 (615)
Q Consensus 154 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 224 (615)
++|||+++|++++|+++.++.+++.++|++++++++|++.... +.+.+....++.++.+++++........
T Consensus 155 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 234 (663)
T 1ry2_A 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA 234 (663)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC
T ss_pred HHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc
Confidence 9999999999999999999999999999999999999987643 2344555556777788877653210000
Q ss_pred CCcCCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHh-hccCcccCCCcEEEEc
Q 007169 225 LPITTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAG-ATLGTKFYPSDVYISY 303 (615)
Q Consensus 225 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~-~~~~~~~~~~d~~l~~ 303 (615)
. .......|+++...... ..+..+..++|+++|+|||||||.||||++||++++..+.. ....+++.++|+++++
T Consensus 235 ~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~ 310 (663)
T 1ry2_A 235 F---HAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTA 310 (663)
T ss_dssp C---CSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEEC
T ss_pred c---CCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEc
Confidence 0 01123578887754322 12334457899999999999999999999999998766543 3445788999999999
Q ss_pred CChHHHHHHH-HHHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHH
Q 007169 304 LPLAHIYERA-NQVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFN 377 (615)
Q Consensus 304 lPl~h~~~~~-~~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (615)
+|++|+++.. ..+.+++.|+++++++ .++..+++.|+++++|+++++|++++.|.+...
T Consensus 311 ~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--------------- 375 (663)
T 1ry2_A 311 GDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD--------------- 375 (663)
T ss_dssp SCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT---------------
T ss_pred CCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc---------------
Confidence 9999999985 4678999999999986 378999999999999999999999988754100
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC---Cccccccccccccccccc
Q 007169 378 AAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG---GRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 378 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g---~~v~~~YG~TE~~~~~~~ 454 (615)
.. .+....++||.+++||+++++++.+++.+.+| +++++.||+||+++.++.
T Consensus 376 --------------~~-----------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~ 430 (663)
T 1ry2_A 376 --------------SY-----------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVT 430 (663)
T ss_dssp --------------TS-----------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEE
T ss_pred --------------cc-----------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeec
Confidence 00 00111258999999999999999999999888 899999999999876655
Q ss_pred cCC---CCCCCCCcCCCCCCeeEEEeecCCCCCCCC-CCCCCcceEEEec--CcccccccCChhhhhhccC--CCCeeec
Q 007169 455 LDE---GDNLSGHVGSPNAACEIKLVDVPEMNYTSE-DQPCPRGEICVRG--PLIFKGYYKDEIQTKEVID--EDGWFHT 526 (615)
Q Consensus 455 ~~~---~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~-~~~~~~GEi~vrg--~~v~~GY~~~~~~t~~~~~--~~gw~~T 526 (615)
..+ .....+++|+|+++++++|+|.++++.++. |. .|||+|+| |+++.|||++|+.+.+.|. .+|||+|
T Consensus 431 ~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~---~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~T 507 (663)
T 1ry2_A 431 PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHA---EGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFT 507 (663)
T ss_dssp CCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSC---EEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEE
T ss_pred cCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCc---ceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEc
Confidence 433 235678999999999999999546777666 55 89999999 5899999999999988873 3899999
Q ss_pred ccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 527 GDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 527 GDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|+++
T Consensus 508 GDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~ 575 (663)
T 1ry2_A 508 GDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLK 575 (663)
T ss_dssp EEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC
T ss_pred CCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEc
Confidence 999999999999999999999997 8999999999999999999999999998754 5799999974
No 15
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.1e-72 Score=622.38 Aligned_cols=439 Identities=19% Similarity=0.216 Sum_probs=319.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...++.++|+++++++||++|+.+. + +.+||+||.++++++|++|.++|+++||+|+|+++|+++|++++
T Consensus 72 ~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 142 (570)
T 4gr5_A 72 PAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVAL 142 (570)
T ss_dssp CCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999763 2 36999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++||+++.++.+++.+++++++++++|++...... +.....++..+..
T Consensus 143 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~----------------- 198 (570)
T 4gr5_A 143 LAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEA----------------- 198 (570)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC-------------------
T ss_pred HHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeeccc-----------------
Confidence 9999999999999999999999999999999999998764332 2222222221110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
.. ............++|+++|+|||||||.||||++||+++++.+.. ...+++.++|++++++|++|..+....
T Consensus 199 ----~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 272 (570)
T 4gr5_A 199 ----AS-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLEL 272 (570)
T ss_dssp ----------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHH
T ss_pred ----cc-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHH
Confidence 00 001111223457899999999999999999999999999877654 445678899999999999998777777
Q ss_pred HHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
+.+++.|+++++.+ .++..+++.++++++|++.++|++++.+.+....
T Consensus 273 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------------------------- 323 (570)
T 4gr5_A 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----------------------------- 323 (570)
T ss_dssp HHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG-----------------------------
T ss_pred HHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh-----------------------------
Confidence 88999999999976 6899999999999999999999999988763110
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (615)
..++||.+++||++++++..+.+.+.+ +++++++||+||+++.++..... .....++|+
T Consensus 324 ----------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 387 (570)
T 4gr5_A 324 ----------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGV 387 (570)
T ss_dssp ----------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBE
T ss_pred ----------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccce
Confidence 014899999999999999999888877 78999999999998766543221 234567999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC--------CeeecccEEEEecCCcEE
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED--------GWFHTGDIGMWIPGGRLK 539 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~--------gw~~TGDlg~~~~dG~l~ 539 (615)
|+++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|+++|..+ |||+|||+|++|+||+|+
T Consensus 388 p~~~~~v~i~d-~~~~~~~~G~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~ 463 (570)
T 4gr5_A 388 PLAGKRAYVLD-DDLKPAANGA---LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLE 463 (570)
T ss_dssp ECTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEE
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---cEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEE
Confidence 99999999999 6678888887 89999999999999999999999998543 799999999999999999
Q ss_pred EEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHc
Q 007169 540 IIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASE 603 (615)
Q Consensus 540 i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~ 603 (615)
|+||+||+||+ +|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++|+++
T Consensus 464 ~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~ 536 (570)
T 4gr5_A 464 YVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHVAEA 536 (570)
T ss_dssp EEEC----------------------------------------------------------------------
T ss_pred EEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHHHhh
Confidence 99999999997 9999999999999999999999999997654 57889988642 4677777764
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.6e-72 Score=609.66 Aligned_cols=450 Identities=21% Similarity=0.280 Sum_probs=331.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3479999999999999999999763 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeH
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTY 236 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 236 (615)
||+++|++++|+++.++.+++.+++++++++++|++....+.+......++.++.++.++.... .+
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 140 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSG--------------PF 140 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCS--------------SC
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCc--------------Ch
Confidence 9999999999999999999999999999999999999888776666667777777777654211 12
Q ss_pred HHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHH
Q 007169 237 SNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQV 316 (615)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~ 316 (615)
.++.........+.....++|+++|+|||||||.||||++||+++++.+.+....+++.++|++++.+|++|.+++...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 22222111222233456789999999999999999999999999999998888888999999999999999999998877
Q ss_pred HHHHhCcEE-EEecCChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 007169 317 MTVYSGVAV-GFYQGDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSP 395 (615)
Q Consensus 317 ~~l~~G~~i-~~~~~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 395 (615)
.++..|++. ++..+++..+++.++++++|+++++|+++..+++...
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------------- 267 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------------- 267 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------------
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------------
Confidence 655555444 4444899999999999999999999999999876310
Q ss_pred hhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCCCCCCCcCCCCCCeeE
Q 007169 396 MWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEI 474 (615)
Q Consensus 396 ~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev 474 (615)
....+++|.+++||++ +..+.+.+.+ ++++++.||+||++++++..... ....++|+|++++++
T Consensus 268 -----------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~G~p~~~~~~ 332 (509)
T 3ivr_A 268 -----------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR-DRPKSAGRPLFWRTV 332 (509)
T ss_dssp -----------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG-GSTTSCCEECTTCEE
T ss_pred -----------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc-cCCCcccccCCCcEE
Confidence 0011489999999988 7888888888 89999999999998776654433 233459999999999
Q ss_pred EEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC--CCeEEcCC
Q 007169 475 KLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK--KNIFKLAQ 552 (615)
Q Consensus 475 ~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~--~d~ikl~~ 552 (615)
+|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 333 ~i~d-~~~~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~-~ 406 (509)
T 3ivr_A 333 AVVD-AEDRPLPPGE---VGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKT-G 406 (509)
T ss_dssp EEEC-TTSCBCCTTC---CEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred EEEC-CCCCCCCCCC---ceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEE-C
Confidence 9999 5678888887 89999999999999999999999999 5999999999999999999999999 999996 9
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH------HHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ------DALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~------~~l~~~~~~~ 603 (615)
|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++
T Consensus 407 G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~ 466 (509)
T 3ivr_A 407 GENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466 (509)
T ss_dssp ------------------------------------------------------------
T ss_pred CEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999997754 46889988643 5677777654
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.7e-71 Score=606.49 Aligned_cols=460 Identities=20% Similarity=0.259 Sum_probs=375.5
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
.++++.++|+++++ +||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 34569999999999 9999999753 2 359999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCc-eEEEEECCCCCCCCCCCcCCCceEee
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV-RLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l-~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
||+++|+++||+++.++.+++.+++++++++++|++....+.+.......+.+ ..++.++.... .+.....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 163 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRES--------EPRLAPL 163 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC--------------CCCB
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEeccccc--------ccccccc
Confidence 99999999999999999999999999999999999988777666654444444 45555543210 0011235
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHH-HHHHHhhccCcccCCCcEEEEcCChHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNL-IASVAGATLGTKFYPSDVYISYLPLAHIYERAN 314 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l-~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~ 314 (615)
++++...... ..+.....++|+++|+|||||||.||||++||+++ .+........+++.++|++++.+|++|.+++..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~ 242 (529)
T 2v7b_A 164 FEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGN 242 (529)
T ss_dssp HHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHH
T ss_pred hhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHH
Confidence 6776653322 12233457899999999999999999999999999 666665556678899999999999999999876
Q ss_pred -HHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 315 -QVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 315 -~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
.+.++..|+++++.+ +++..+++.++++++|+++++|+++..+++..
T Consensus 243 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------------------------------ 292 (529)
T 2v7b_A 243 GLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSP------------------------------ 292 (529)
T ss_dssp HTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCT------------------------------
T ss_pred HHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCc------------------------------
Confidence 456899999999873 79999999999999999999999998876510
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAA 471 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~ 471 (615)
...... . .++|.+++||+++++++.+++++.+|++++++||+||++.+++.....+...+++|+|+++
T Consensus 293 ~~~~~~-----------~-~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~ 360 (529)
T 2v7b_A 293 NLPARA-----------D-VAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPG 360 (529)
T ss_dssp TCCCGG-----------G-CCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTCCCTTSCCEECTT
T ss_pred cccccc-----------C-CceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCCCccCCcccCCCC
Confidence 000000 0 3799999999999999999999999999999999999976665555555677899999999
Q ss_pred eeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcC
Q 007169 472 CEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLA 551 (615)
Q Consensus 472 ~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~ 551 (615)
++++|+| ++++.++.|+ .|||+|+|++++.|||++|+.|++.| .+|||+|||+|++|+||+|+|+||+||+||+
T Consensus 361 ~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~- 434 (529)
T 2v7b_A 361 YEIELRD-EAGHAVPDGE---VGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKV- 434 (529)
T ss_dssp CEEEEEC-TTSCBCCTTS---CEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred CEEEEEC-CCCCCCCCCC---ccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEE-
Confidence 9999999 6778888887 89999999999999999999999999 5899999999999999999999999999997
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCC--CCeEEEEEEeCH---------HHHHHHHHHc
Q 007169 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSF--NSALVAIVSVDQ---------DALKAWAASE 603 (615)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~--~~~~va~vv~~~---------~~l~~~~~~~ 603 (615)
+|++|+|.+||++|.+||+|.+++|++... .+.++|+|++.+ ++++++++++
T Consensus 435 ~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~ 497 (529)
T 2v7b_A 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR 497 (529)
T ss_dssp ---CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT
T ss_pred CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh
Confidence 899999999999999999999999999732 247899998642 3577888753
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.4e-71 Score=611.61 Aligned_cols=439 Identities=19% Similarity=0.268 Sum_probs=368.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|.+.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34579999999999999999999753 2 46999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++||+++.++.+++.+++++++++++|++......+.... ....++.++...
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~----~~~~~~~~~~~~---------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ----FNGQVEIFEEDT---------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC----CCSEEEECCCST----------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc----ccCceeeecchh----------------
Confidence 999999999999999999999999999999999999987655443221 111233322110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
+... .......+..++|+++|+|||||||.||||++||+++.+.+......+++.++|++++++|++|.+++...
T Consensus 167 ---~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 167 ---IKIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---TTTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---hccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0000 00111234568899999999999999999999999999888877777889999999999999999998877
Q ss_pred HHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCC
Q 007169 316 VMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGK 391 (615)
Q Consensus 316 ~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 391 (615)
+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+...
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------------- 290 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------------- 290 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------------
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------------
Confidence 88999999999876 5899999999999999999999988765320
Q ss_pred CCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC---CCCCCcCCC
Q 007169 392 NPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD---NLSGHVGSP 468 (615)
Q Consensus 392 ~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p 468 (615)
...++|.+++||+++++++.+++++ .++++++||+||++..++...... ...+++|+|
T Consensus 291 -----------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p 351 (563)
T 1amu_A 291 -----------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETIGHSVPIGAP 351 (563)
T ss_dssp -----------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEE
T ss_pred -----------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccCCCCCcccce
Confidence 0148999999999999999999877 478999999999987655433222 355789999
Q ss_pred CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCC------CCeeecccEEEEecCCcEEEEc
Q 007169 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDE------DGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 469 ~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~------~gw~~TGDlg~~~~dG~l~i~G 542 (615)
+++++++|+| ++++.++.|+ .|||+|+|+++++|||++|+.|+++|.. +|||+|||+|++|+||+|+|+|
T Consensus 352 ~~~~~v~i~d-~~~~~~~~g~---~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~G 427 (563)
T 1amu_A 352 IQNTQIYIVD-ENLQLKSVGE---AGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLG 427 (563)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---EEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---cEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEec
Confidence 9999999999 6677888887 8999999999999999999999999843 4699999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~ 603 (615)
|+||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|+++ .+++++|++++
T Consensus 428 R~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~ 494 (563)
T 1amu_A 428 RIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEE 494 (563)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred cccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhh
Confidence 99999997 9999999999999999999999999997754 4789999864 57899999875
No 19
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6e-71 Score=600.95 Aligned_cols=441 Identities=19% Similarity=0.217 Sum_probs=375.4
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYH-GISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+. |.++|++|+++++|+++|++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999753 2 4699999999999999999885 888999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|++++|+++.++.+++.+++++++++++|++...... .. ........++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~---------------------~~~~~~~~~~ 124 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AV---------------------GQQIQTVSAE 124 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CC---------------------CCSSCEEEHH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hc---------------------ccccceecHh
Confidence 99999999999999999999999999999999997543210 00 0112345667
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
++...............++|+++|+|||||||.||||++||+++.+.+.+....+++.++|++++++|++|.+++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 125 ELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp HHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred hhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 77654433222334457899999999999999999999999999999988877788999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+++.++++++|++.++|+++..++...
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 252 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------------- 252 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------------
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------------
Confidence 999999999886 48999999999999999999999998876520
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCCCcCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSGHVGS 467 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~ 467 (615)
.......+++|.+++||+++++++.+++++.| +++++++||+||++..++..... .....++|+
T Consensus 253 ----------~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 322 (511)
T 3e7w_A 253 ----------GFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGF 322 (511)
T ss_dssp ----------TCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE
T ss_pred ----------ccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcc
Confidence 00011125899999999999999999999998 89999999999998766543322 245567999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC-CCC--eeecccEEEEecCCcEEEEccC
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID-EDG--WFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~-~~g--w~~TGDlg~~~~dG~l~i~GR~ 544 (615)
|+++++++|+| +++..++.|+ .|||+|+|+++++|||++|+.|++.|. .+| ||+|||+|++ +||+|+|+||+
T Consensus 323 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~ 397 (511)
T 3e7w_A 323 AKPDMNIFIMD-EEGQPLPEGE---KGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRL 397 (511)
T ss_dssp ECTTCEEEEEC-TTSCBCCTTC---CEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEES
T ss_pred eeCCCEEEEEC-CCCCCCCCCC---ceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccc
Confidence 99999999999 5678888887 899999999999999999999999983 233 7999999999 59999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHc
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASE 603 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~ 603 (615)
||+||+ +|++|+|.+||++|.+||+|.+|+|+|.+++ +.++|+|++++ ++++++++++
T Consensus 398 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 468 (511)
T 3e7w_A 398 DFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS 468 (511)
T ss_dssp SSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH
T ss_pred cCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh
Confidence 999997 9999999999999999999999999997644 58999999854 4677788764
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.7e-71 Score=603.97 Aligned_cols=442 Identities=19% Similarity=0.235 Sum_probs=369.4
Q ss_pred CCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHH
Q 007169 79 GTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHAC 158 (615)
Q Consensus 79 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 158 (615)
+|+.++|+++++++||++|+.+. + +++||+||+++++++|++|.+.|+++||+|+|+++|+++|++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999864 2 35999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHHH
Q 007169 159 SAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYSN 238 (615)
Q Consensus 159 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (615)
+++|+++||+++.++.+++.+++++++++++|++...... ..+ . .++.. ..+.+
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~~~-~-~~~~~------------------~~~~~ 125 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT------DLP-V-RIVSE------------------DNLKD 125 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS------CCS-S-EEEET------------------HHHHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc------ccc-c-ceech------------------hhhhh
Confidence 9999999999999999999999999999999997543210 000 0 01100 01222
Q ss_pred HHhcCc-cCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 239 LLSQGR-SNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 239 l~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
+..... ....+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 205 (512)
T 3fce_A 126 IFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYP 205 (512)
T ss_dssp HHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHH
T ss_pred hcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHH
Confidence 221111 1112233457899999999999999999999999999999888887889999999999999999999888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+++.++++++|++.++|+++..++...
T Consensus 206 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------------- 253 (512)
T 3fce_A 206 SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEA-------------------------------- 253 (512)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTST--------------------------------
T ss_pred HHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc--------------------------------
Confidence 999999999987 48999999999999999999999998875410
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCCC-----CCCCCcCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEGD-----NLSGHVGS 467 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----~~~~~vG~ 467 (615)
.......+++|.+++||+++++++.+++.+.| ++++++.||+||++..++...... ....++|.
T Consensus 254 ----------~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~ 323 (512)
T 3fce_A 254 ----------SFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGY 323 (512)
T ss_dssp ----------TCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEE
T ss_pred ----------cccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCcccc
Confidence 00011125899999999999999999999988 899999999999987665443221 35678999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEEEccC
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKIIDRK 544 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i~GR~ 544 (615)
|.++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.| +.+|||+|||+|++ +||+|+|+||+
T Consensus 324 ~~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~ 398 (512)
T 3fce_A 324 CKSDCRLLIMK-EDGTIAPDGE---KGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRL 398 (512)
T ss_dssp ECTTCEEEEEC-SSSCBCCTTS---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEG
T ss_pred ccCCcEEEEEC-CCCCCCCCCC---eEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEeccc
Confidence 99999999999 6777888887 89999999999999999999999998 45789999999999 79999999999
Q ss_pred CCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH----------HHHHHHHHHc
Q 007169 545 KNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ----------DALKAWAASE 603 (615)
Q Consensus 545 ~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~----------~~l~~~~~~~ 603 (615)
||+||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++++ ++++++++++
T Consensus 399 ~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 469 (512)
T 3fce_A 399 DFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER 469 (512)
T ss_dssp GGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT
T ss_pred CCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh
Confidence 999997 9999999999999999999999999987654 47899999854 3577888764
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=7.6e-71 Score=611.02 Aligned_cols=437 Identities=17% Similarity=0.144 Sum_probs=363.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
....|+.++|++.++++||++|+.+. + +.+||+||.++++++|++|++.|+++||+|+|+++|+++|++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 35679999999999999999999764 3 35999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++||+++.++.+++.++++++++++++++....... ..+.. ..
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~----------------------~~ 145 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPC----------------------VP 145 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCE----------------------EE
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCce----------------------ee
Confidence 99999999999999999999999999999999999765432110 01110 11
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHH
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQ 315 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~ 315 (615)
+..... ...........++|+++|+|||||||.||||+++|+++.+.+.. ...+++.++|++++.+|++|.+++...
T Consensus 146 ~~~~~~--~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 146 VRHLPA--APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp GGGCCC--CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred eccCCc--CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 111000 00111223356899999999999999999999999999887765 445788999999999999999999888
Q ss_pred HHHHHhCcEEEEec---CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCC
Q 007169 316 VMTVYSGVAVGFYQ---GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKN 392 (615)
Q Consensus 316 ~~~l~~G~~i~~~~---~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 392 (615)
+.+++.|+++++.+ .++..+++.++++++|+++++|++++.+.+...
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------------ 272 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------------ 272 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------------
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------------
Confidence 89999999999864 689999999999999999999999998865200
Q ss_pred CCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC----CCCCCCcCC
Q 007169 393 PSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG----DNLSGHVGS 467 (615)
Q Consensus 393 ~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~ 467 (615)
...++||.+++||++++++..+.+...+ +++++|+||+||++..++..... .....++|+
T Consensus 273 ---------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~ 337 (620)
T 4dg8_A 273 ---------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGK 337 (620)
T ss_dssp ---------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBE
T ss_pred ---------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCcee
Confidence 0015899999999999988888776665 88999999999998766543222 245678999
Q ss_pred CCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCC-------CeeecccEEEEecCCcEEE
Q 007169 468 PNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDED-------GWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 468 p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~-------gw~~TGDlg~~~~dG~l~i 540 (615)
|+++++++|+|.+....++.|. .|||||+|+++++|||++|+.|+++|..+ +||+|||+|++++||+|+|
T Consensus 338 p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~ 414 (620)
T 4dg8_A 338 AIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRF 414 (620)
T ss_dssp ECTTEEEEEECTTSCBCCSSSC---CEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEE
T ss_pred cccCcEEEEECccCCCCCCCCC---ceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEE
Confidence 9999999999944433366776 89999999999999999999999999543 7999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC--CeEEEEEEeCHHHHHHHHHH
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN--SALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~--~~~va~vv~~~~~l~~~~~~ 602 (615)
+||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++++++.+.+.+.+++++
T Consensus 415 ~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~ 477 (620)
T 4dg8_A 415 IGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLR 477 (620)
T ss_dssp EECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHH
T ss_pred EccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHH
Confidence 9999999998 8999999999999999999999999987654 46677777666555555554
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.5e-70 Score=607.76 Aligned_cols=460 Identities=20% Similarity=0.249 Sum_probs=388.3
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|+++++ ||++|+.+. + +.+||+||+++++++|++|++.|+++||+|+|+++|+++|++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 45789999999887 999999753 2 469999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccch-----HHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTL-----NSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+.++.+...+....
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 9999999999999999999999999999999999987654 233333334555666666544211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
..+.+....... .....+..++++++|+|||||||.||||+++|+++++.+......+++.++|++++++|++|.++
T Consensus 163 --~~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 239 (617)
T 3rg2_A 163 --HNLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYA 239 (617)
T ss_dssp --TBHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHH
T ss_pred --cchhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhh
Confidence 134444433222 22334457899999999999999999999999999999988888888999999999999999999
Q ss_pred HHH--HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Q 007169 312 RAN--QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAML 388 (615)
Q Consensus 312 ~~~--~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 388 (615)
+.. .+.+++.|+++++.+ .++..+++.++++++|++.++|+++..+.+.......
T Consensus 240 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---------------------- 297 (617)
T 3rg2_A 240 MSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES---------------------- 297 (617)
T ss_dssp HHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC----------------------
T ss_pred hhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc----------------------
Confidence 875 677899999999987 7899999999999999999999999988764221100
Q ss_pred cCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCC-CCCCCcCC
Q 007169 389 SGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGD-NLSGHVGS 467 (615)
Q Consensus 389 ~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~ 467 (615)
....+++|.+++||+++++++.+++.+.+++++++.||+||++..++...... ....++|.
T Consensus 298 ------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~ 359 (617)
T 3rg2_A 298 ------------------RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGY 359 (617)
T ss_dssp ------------------TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCE
T ss_pred ------------------cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccccccCCCc
Confidence 00115899999999999999999999999999999999999986544332211 23457899
Q ss_pred CC-CCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCC
Q 007169 468 PN-AACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKN 546 (615)
Q Consensus 468 p~-~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d 546 (615)
|+ ++++++|+| ++++.++.|. .|||+|+|+++++|||++|+.|+++|+.+|||+|||+|++++||.|+|+||+||
T Consensus 360 p~~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd 435 (617)
T 3rg2_A 360 PMCPDDEVWVAD-AEGNPLPQGE---VGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKD 435 (617)
T ss_dssp ESCTTCEEEEEC-TTSCBCCTTC---CEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSS
T ss_pred cCCCCceEEEEC-CCCCCCCCCC---ceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCC
Confidence 97 788999999 6778888887 899999999999999999999999999999999999999999999999999999
Q ss_pred eEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHcCCC
Q 007169 547 IFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASEGIQ 606 (615)
Q Consensus 547 ~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~~~~ 606 (615)
+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. .++++++++++.++
T Consensus 436 ~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp 501 (617)
T 3rg2_A 436 QINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIA 501 (617)
T ss_dssp EEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCC
T ss_pred EEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCc
Confidence 9997 8999999999999999999999999987643 5788999864 57899999876554
No 23
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=9.8e-71 Score=601.08 Aligned_cols=441 Identities=19% Similarity=0.216 Sum_probs=364.4
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
+.|+.++|++.++++||++|+.+. + +++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999753 2 4699999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|+++||+++.++.+++.+++++++++++|++.+....+ . +.....+.
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~----------------------~~~~~~~~ 124 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E----------------------GISLVSLS 124 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------------TSEEEEHH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------------cCcccchh
Confidence 999999999999999999999999999999999987542211 1 11233444
Q ss_pred HHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC--cccCCCcEEEEcCChHHHHHHH
Q 007169 238 NLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG--TKFYPSDVYISYLPLAHIYERA 313 (615)
Q Consensus 238 ~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~--~~~~~~d~~l~~lPl~h~~~~~ 313 (615)
++...... .........++|+++|+|||||||.||||++||+++++.+.+.... +.+.+++++++.+|++|.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 204 (521)
T 3l8c_A 125 EIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM 204 (521)
T ss_dssp HHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH
T ss_pred hhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH
Confidence 44322111 1122344678999999999999999999999999999887766554 6778999999999999999988
Q ss_pred HHHHHHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhc
Q 007169 314 NQVMTVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLS 389 (615)
Q Consensus 314 ~~~~~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 389 (615)
..+.++..|+++++.+ .++..+++.+.++++|++.++|+++..+.....
T Consensus 205 ~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------------- 257 (521)
T 3l8c_A 205 YWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--------------------------- 257 (521)
T ss_dssp HHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT---------------------------
T ss_pred HHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc---------------------------
Confidence 8888999999999876 389999999999999999999999987754100
Q ss_pred CCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCccccccccccccccccccCCC-----CCCCC
Q 007169 390 GKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQLDEG-----DNLSG 463 (615)
Q Consensus 390 ~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~-----~~~~~ 463 (615)
......+++|.+++||+++++++.+.+.+.+ +++++++||+||++..++..... ....+
T Consensus 258 ---------------~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 322 (521)
T 3l8c_A 258 ---------------FCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRL 322 (521)
T ss_dssp ---------------CSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSC
T ss_pred ---------------cccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCcc
Confidence 0001125899999999999999999999888 89999999999998766543322 13567
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhcc---CCCCeeecccEEEEecCCcEEE
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVI---DEDGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~---~~~gw~~TGDlg~~~~dG~l~i 540 (615)
++|+|+++++++|+| +++..++.|+ .|||+|+|++++.|||++|+.|++.| +.+|||+|||+|++|+||+|+|
T Consensus 323 ~vG~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~ 398 (521)
T 3l8c_A 323 PIGYPKPDSPTYIID-EDGKELSSGE---QGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLY 398 (521)
T ss_dssp EEEEECTTSCEEEEC-TTSCBCCTTC---CEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEE
T ss_pred ccccccCCCEEEEEC-CCcCCCCCCC---ceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEE
Confidence 899999999999999 6677788887 89999999999999999999999998 5678999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC----CeEEEEEEeCH-------------HHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN----SALVAIVSVDQ-------------DALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~----~~~va~vv~~~-------------~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|++++ ++++++++++
T Consensus 399 ~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~ 477 (521)
T 3l8c_A 399 GGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDH 477 (521)
T ss_dssp EEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGG
T ss_pred eCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhh
Confidence 9999999997 8999999999999999999999999986532 46899999764 3567777654
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-70 Score=641.87 Aligned_cols=468 Identities=25% Similarity=0.357 Sum_probs=344.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.|...|+.++|.++++++||++|+++. +. .+++||+||.++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 57 ~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~----~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~ 129 (979)
T 3tsy_A 57 IPNHLSLHDYIFQNISEFATKPCLING---PT----GHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLS 129 (979)
T ss_dssp CCTTSCHHHHHTTTGGGTTTSEEEEET---TT----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEEC---CC----CcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHH
Confidence 346689999999999999999999763 21 14699999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++||+++.++++++.+++++++++++|++....+.+....... .+ .++.++..... .......
T Consensus 130 ~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~------~~~~~~~ 201 (979)
T 3tsy_A 130 FLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GV-VIVCIDDNESV------PIPEGCL 201 (979)
T ss_dssp HHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CC-EEEECCCCTTS------CCCTTEE
T ss_pred HHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-Cc-eEEEeCCcccc------cCCcccc
Confidence 9999999999999999999999999999999999999988776655544332 22 34444432110 0111235
Q ss_pred eHHHHHhcCcc--CCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc----CcccCCCcEEEEcCChHH
Q 007169 235 TYSNLLSQGRS--NLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL----GTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 235 ~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~----~~~~~~~d~~l~~lPl~h 308 (615)
.|.++...... ...+.....++|+++|+|||||||.||||++||+++++.+..... .+.+.++|++++++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 281 (979)
T 3tsy_A 202 RFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFH 281 (979)
T ss_dssp EGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSS
T ss_pred cHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHH
Confidence 56665543322 112334567899999999999999999999999999988766543 356789999999999999
Q ss_pred HHHHHH-HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 309 IYERAN-QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 309 ~~~~~~-~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
.+++.. .+.++..|+++++.+ +++..+++.++++++|++.++|+++..+.+...
T Consensus 282 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------ 337 (979)
T 3tsy_A 282 IYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE------------------------ 337 (979)
T ss_dssp HHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG------------------------
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc------------------------
Confidence 999865 567899999999987 799999999999999999999999998876210
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh-CCcccccccccccccccccc-----CCCCC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF-GGRVTEGYGMTETSCLISQL-----DEGDN 460 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~-----~~~~~ 460 (615)
......++||.+++||+++++++.+++++.| +++++++||+||++.+++.. .+...
T Consensus 338 ------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~ 399 (979)
T 3tsy_A 338 ------------------TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPV 399 (979)
T ss_dssp ------------------GGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCC
T ss_pred ------------------ccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCcccc
Confidence 0011125899999999999999999999988 89999999999998765443 22235
Q ss_pred CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEE
Q 007169 461 LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKI 540 (615)
Q Consensus 461 ~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i 540 (615)
..+++|+|+++++++|+|+++++.++.|+ .|||+|+|+++++|||++|+.|++.|+.+|||+|||+|++|+||+|+|
T Consensus 400 ~~~~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~ 476 (979)
T 3tsy_A 400 KSGACGTVVRNAEMKIVDPDTGDSLSRNQ---PGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFI 476 (979)
T ss_dssp CTTCCCEECSSCEEEEECTTSCCBCCTTC---CEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred CCCCcCcccCCcEEEEEeCCCCCCCCCCC---ccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEE
Confidence 67899999999999999988788888887 899999999999999999999999999999999999999999999999
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC------HHHHHHHHHHc
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD------QDALKAWAASE 603 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~------~~~l~~~~~~~ 603 (615)
+||+||+||+ +|++|+|.|||++|.+||+|.+++|++.+++ +.++|+|++. +++++++++++
T Consensus 477 ~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~ 547 (979)
T 3tsy_A 477 VDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQ 547 (979)
T ss_dssp EEESCC------------------------------------------------------------------
T ss_pred ecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHh
Confidence 9999999997 8999999999999999999999999997654 5789999864 35677777764
No 25
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=9.4e-70 Score=590.43 Aligned_cols=450 Identities=20% Similarity=0.235 Sum_probs=361.6
Q ss_pred CHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHH
Q 007169 80 TTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACS 159 (615)
Q Consensus 80 tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 159 (615)
|+.++|+++++++||++|+.+. + +++||+||.++++++|++|.+. +||+|+|+++|+++|+++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6678899999999999999753 2 3699999999999999999987 89999999999999999999999
Q ss_pred hcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe-eHHH
Q 007169 160 AYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL-TYSN 238 (615)
Q Consensus 160 ~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~ 238 (615)
++|++++|+++.++.+++.+++++++++++|++........... ....+..+......... .. ........ ..+.
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 145 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGL-LD--NTMGIQYDTSNET 145 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC-------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccc-cc--cccccccccchhh
Confidence 99999999999999999999999999999999877544332211 11111111111000000 00 00000000 0111
Q ss_pred HHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHH
Q 007169 239 LLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMT 318 (615)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~ 318 (615)
+...............++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.+++...+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 146 VVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp ----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred ccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 11111100112234578999999999999999999999999999998888888899999999999999999999888889
Q ss_pred HHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchh
Q 007169 319 VYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMW 397 (615)
Q Consensus 319 l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 397 (615)
++.|+++++.+ +++..+++.++++++|+++++|+++..|.+...
T Consensus 226 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------------------- 270 (501)
T 3ipl_A 226 VIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGL----------------------------------- 270 (501)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTC-----------------------------------
T ss_pred HHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCC-----------------------------------
Confidence 99999999987 799999999999999999999999998876310
Q ss_pred hHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCC--CCCCCCcCCCCCCeeEE
Q 007169 398 DRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEG--DNLSGHVGSPNAACEIK 475 (615)
Q Consensus 398 d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ 475 (615)
....++|.+++||+++++++.+++++ +++++++.||+||+++.++...+. ....+++|+|+++++++
T Consensus 271 ----------~~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 339 (501)
T 3ipl_A 271 ----------HEPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVK 339 (501)
T ss_dssp ----------CSCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEE
T ss_pred ----------CCcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEE
Confidence 00027999999999999999999987 599999999999998655443332 24678899999999999
Q ss_pred EeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeee
Q 007169 476 LVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEY 555 (615)
Q Consensus 476 ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~ 555 (615)
|+|++ .+. .|||+|+|+.+++|||++|+.|.+ | .+|||+|||+|++|+||+|+|+||+||+||+ +|++
T Consensus 340 i~d~~------~~~---~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~G~~ 407 (501)
T 3ipl_A 340 IKNPN------KEG---HGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGDIAEIDHEGYVMIYDRRKDLIIS-GGEN 407 (501)
T ss_dssp EESCC------SSC---CEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEEEEEECTTSCEEEEEECCCCEEC-SSCE
T ss_pred EecCC------CCC---ccEEEEeccchhhhhCcChhhcch-h-cCCceecCCEEEEcCCCeEEEEccccceEEE-CCEE
Confidence 99943 233 799999999999999999999988 6 7899999999999999999999999999995 9999
Q ss_pred echHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe----CHHHHHHHHHHc
Q 007169 556 IAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV----DQDALKAWAASE 603 (615)
Q Consensus 556 v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~----~~~~l~~~~~~~ 603 (615)
|+|.+||++|.+||+|.+++|+|.+++ +.++|+|++ ++++++++++++
T Consensus 408 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~ 462 (501)
T 3ipl_A 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKH 462 (501)
T ss_dssp ECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred ECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhh
Confidence 999999999999999999999997654 467888886 457899999875
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.3e-70 Score=592.55 Aligned_cols=440 Identities=24% Similarity=0.298 Sum_probs=359.8
Q ss_pred CCCCHHHHHHHHHHhcCC-CceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRD-YKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
++.|+.+.|.++++++|+ ++|+.+. + +.+||+||.++++++|++|. .|++|+|+++|+++|++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 467888888888888887 9999763 2 46999999999999998774 4889999999999999999
Q ss_pred HHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEee
Q 007169 156 HACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILT 235 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
|||+++|+++|||++.++.+++.+++++++++++|++..... ......+..+. ++..
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~-~~~~----------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVD-VDVR----------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEE-CCTT-----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccc-cccc-----------------
Confidence 999999999999999999999999999999999999865210 00111222211 1110
Q ss_pred HHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHH-
Q 007169 236 YSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERAN- 314 (615)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~- 314 (615)
.....+.....++|+++|+|||||||.||||++||+++++.+......+++.++|++++.+|++|.+++..
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 00112233457899999999999999999999999999999988887788999999999999999999875
Q ss_pred HHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 315 QVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 315 ~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
.+.++..|+++++.+ +++..+++.+ ++++|+++++|+++..+.+.+.....
T Consensus 215 ~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~--------------------------- 266 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE--------------------------- 266 (505)
T ss_dssp THHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH---------------------------
T ss_pred HHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch---------------------------
Confidence 677899999999887 7899999999 88999999999999998763211000
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCee
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACE 473 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~e 473 (615)
....+ +++|.+++||+++++++.+++++.+++++++.||+||++..++.........+++|+|+++++
T Consensus 267 ----~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~ 334 (505)
T 3nyq_A 267 ----LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVE 334 (505)
T ss_dssp ----HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCE
T ss_pred ----hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCCCCCCCcccCCCCCE
Confidence 00001 378999999999999999999999999999999999998777766655677889999999999
Q ss_pred EEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccC-CCeEEcCC
Q 007169 474 IKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRK-KNIFKLAQ 552 (615)
Q Consensus 474 v~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~-~d~ikl~~ 552 (615)
++|+| +++..++...+.+.|||+|+|++++.|||++|+.|++.|+.+|||+|||+|++|+||+|+|+||+ ||+||+ +
T Consensus 335 ~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~-~ 412 (505)
T 3nyq_A 335 LRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKS-G 412 (505)
T ss_dssp EEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEE-T
T ss_pred EEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEe-C
Confidence 99999 45555554111138999999999999999999999999988999999999999999999999998 599996 8
Q ss_pred eeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeCH-------HHHHHHHHHc
Q 007169 553 GEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVDQ-------DALKAWAASE 603 (615)
Q Consensus 553 G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~~-------~~l~~~~~~~ 603 (615)
|++|+|.|||++|.+||+|.+|+|+|.+++ +.++|+|++.+ ++++++++++
T Consensus 413 G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~ 473 (505)
T 3nyq_A 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR 473 (505)
T ss_dssp TEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHH
T ss_pred CEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999997654 58999999753 6888998875
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.3e-69 Score=598.39 Aligned_cols=456 Identities=19% Similarity=0.219 Sum_probs=370.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVD 155 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 155 (615)
+...|+.++|.++++++||++|+.+. ++ +..+++||+||.++++++|++|.+.|+++||+|+|+++|+++|++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35689999999999999999999876 32 23467999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEecCCCC---CHHHHHHHHHhccceEEEEcccchHHHHhhh-ccCCCceEEEEECCCCCCCCCCCcCCCc
Q 007169 156 HACSAYSFISVPLYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 156 lA~~~~G~v~vpl~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
|||+++|++++|+++.+ ..+++.++++++++++++++.+....+.... ...+.+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------------------- 143 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI------------------- 143 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE-------------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc-------------------
Confidence 99999999999999988 4578999999999999999987665543322 112211111
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHH
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYE 311 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~ 311 (615)
.+..++++...... ........++|+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|.++
T Consensus 144 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 222 (590)
T 3kxw_A 144 PAIALESIELNRSS-SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMG 222 (590)
T ss_dssp EEEEGGGCCGGGGG-GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred ceeechhccccccc-cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchh
Confidence 11222222111111 12234567899999999999999999999999999999988888889999999999999999999
Q ss_pred HHH-HHHHHHhCcEEEEec-C----ChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 312 RAN-QVMTVYSGVAVGFYQ-G----DNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 312 ~~~-~~~~l~~G~~i~~~~-~----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
+.. .+.+++.|+++++.+ . ++..+++.++++++|++.++|.++..+.+.+....
T Consensus 223 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------------------- 282 (590)
T 3kxw_A 223 LIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK-------------------- 282 (590)
T ss_dssp HHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG--------------------
T ss_pred hHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh--------------------
Confidence 987 677899999999986 2 89999999999999999999999998876321100
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------CccccccccccccccccccCCC-
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLISQLDEG- 458 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~- 458 (615)
......++||.+++||+++++++.+++++.|+ ++++++||+||++.+++...+.
T Consensus 283 -------------------~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~ 343 (590)
T 3kxw_A 283 -------------------KEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGS 343 (590)
T ss_dssp -------------------GTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTS
T ss_pred -------------------ccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCC
Confidence 01111258999999999999999999999873 3699999999998776643221
Q ss_pred --------------------------CCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChh
Q 007169 459 --------------------------DNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEI 512 (615)
Q Consensus 459 --------------------------~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~ 512 (615)
....+++|+|+++ ++|+|++++..++.|+ .|||+|+|+++++|||++|+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~ 418 (590)
T 3kxw_A 344 SYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ---VGEIWVQSNSVAKGYWNQPE 418 (590)
T ss_dssp CCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB---CEEEEEESTTSCCCBTTCHH
T ss_pred CceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC---EEEEEEeCCcccccccCChh
Confidence 1234688999998 8899977688888887 89999999999999999999
Q ss_pred hhhhccCC------CC--eeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHH-hcCCCcc--eEEEEeeCC
Q 007169 513 QTKEVIDE------DG--WFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY-AKCKFVG--QCFVYGDSF 581 (615)
Q Consensus 513 ~t~~~~~~------~g--w~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l-~~~p~V~--~~~V~g~~~ 581 (615)
.|+++|.. +| ||+|||+|++| ||.|+|+||+||+||+ +|++|+|.+||++| ..+|.|. +|+|++.++
T Consensus 419 ~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~ 496 (590)
T 3kxw_A 419 ETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQE 496 (590)
T ss_dssp HHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEE
T ss_pred HHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccEEEEEecC
Confidence 99999953 24 99999999999 9999999999999997 89999999999999 8899998 788888654
Q ss_pred C--CeEEEEEEeCH--------HHHHHHHHH
Q 007169 582 N--SALVAIVSVDQ--------DALKAWAAS 602 (615)
Q Consensus 582 ~--~~~va~vv~~~--------~~l~~~~~~ 602 (615)
+ +.++++|++.+ +++.+++++
T Consensus 497 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~ 527 (590)
T 3kxw_A 497 EHEYKLTVMCEVKNRFMDDVAQDNLFNEIFE 527 (590)
T ss_dssp TTEEEEEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEeccccccchhHHHHHHHHHH
Confidence 3 57788887642 455666554
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3.4e-67 Score=580.74 Aligned_cols=441 Identities=20% Similarity=0.313 Sum_probs=364.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 75 HPEIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 75 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+...|+.++|+++++++|+.+++.. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|+++|+++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 90 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEA 90 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 45778999999999999999777632 222346799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCC-------HHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCc
Q 007169 155 DHACSAYSFISVPLYDTLG-------PDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPI 227 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~-------~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~ 227 (615)
++||+++|+++||+++.++ .+++.+++++++++++|++.+..+.+.......+.+..
T Consensus 91 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~---------------- 154 (576)
T 3gqw_A 91 FFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHV---------------- 154 (576)
T ss_dssp HHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEE----------------
T ss_pred HHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCccee----------------
Confidence 9999999999999999999 89999999999999999999887777665544443321
Q ss_pred CCCceEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC-cccCCCcEEEEcCCh
Q 007169 228 TTGVQILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG-TKFYPSDVYISYLPL 306 (615)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~-~~~~~~d~~l~~lPl 306 (615)
......... ...........++|+++|+|||||||.||||++||+++++.+...... +++.++|++++++|+
T Consensus 155 ------~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 155 ------LSHAWFKAL-PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp ------EEHHHHHTS-CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred ------cchhhhhcc-cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 111111111 111223344578999999999999999999999999999888776544 788999999999999
Q ss_pred HHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHH
Q 007169 307 AHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAY 380 (615)
Q Consensus 307 ~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 380 (615)
+|.+++.. .+.++..|+++++.+ .++..+++.++++++|+++++|+++..+.+....
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----------------- 290 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNE----------------- 290 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCH-----------------
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcc-----------------
Confidence 99999876 456788999988876 4889999999999999999999999877552111
Q ss_pred HHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHh------CCccccccccccccccccc
Q 007169 381 NAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICF------GGRVTEGYGMTETSCLISQ 454 (615)
Q Consensus 381 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~------g~~v~~~YG~TE~~~~~~~ 454 (615)
........+++|.+++||+++++++.+++.+.| ++++++.||+||++..++.
T Consensus 291 ----------------------~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~ 348 (576)
T 3gqw_A 291 ----------------------KDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF 348 (576)
T ss_dssp ----------------------HHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEE
T ss_pred ----------------------cccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeec
Confidence 011111236899999999999999999999988 6789999999999877665
Q ss_pred cCCCCC----------------------------CCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCccccc
Q 007169 455 LDEGDN----------------------------LSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKG 506 (615)
Q Consensus 455 ~~~~~~----------------------------~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~G 506 (615)
...... ...++|+|+++++++|+| +++..++.|+ .|||+|+|+++++|
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~---~GEl~v~g~~~~~g 424 (576)
T 3gqw_A 349 SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAERV---VGHICISGPSLMSG 424 (576)
T ss_dssp CCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCTTB---CEEEEEESTTSCCC
T ss_pred ccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCCCC---eEEEEEeCcccccc
Confidence 432210 113799999999999999 7778888887 89999999999999
Q ss_pred ccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC-CeE
Q 007169 507 YYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN-SAL 585 (615)
Q Consensus 507 Y~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~-~~~ 585 (615)
||++|+.+.+.+ .+|||+|||+|++ +||+|+|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.... +.+
T Consensus 425 Y~~~~~~~~~~~-~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~ 501 (576)
T 3gqw_A 425 YFGDQVSQDEIA-ATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKI 501 (576)
T ss_dssp BTTCHHHHHHHH-HHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSSCCTTSEEEEECTTSCE
T ss_pred ccCCcccccccc-CCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcccccccEEEEEcCCccE
Confidence 999999998877 7999999999999 69999999999999997 9999999999999999999998877765433 344
Q ss_pred EEEEE
Q 007169 586 VAIVS 590 (615)
Q Consensus 586 va~vv 590 (615)
+++++
T Consensus 502 ~~~~~ 506 (576)
T 3gqw_A 502 ILQIQ 506 (576)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.6e-68 Score=584.57 Aligned_cols=442 Identities=16% Similarity=0.145 Sum_probs=316.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCceEEEEEe-ecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHH
Q 007169 76 PEIGTTHDNFVRAVDTFRDYKYLGTRVR-VDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIV 154 (615)
Q Consensus 76 ~~~~tl~~~l~~~a~~~pd~~al~~~~~-~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 154 (615)
.+..|+.++|+++++++||++|+.+... .+......+++||+||.++++++|++|.+.|+ +||+|+|+++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 3567899999999999999999987510 01112234789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEe
Q 007169 155 DHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQIL 234 (615)
Q Consensus 155 ~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~ 234 (615)
+|||+++|+++||+++.++.+++.+++++++++++|++......+ ..+....++..+. .
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~----------------~ 154 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN----------------Q 154 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC----------------H
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc----------------h
Confidence 999999999999999999999999999999999999987654321 1111112221110 1
Q ss_pred eHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc--------CcccCCCcEEEEcCCh
Q 007169 235 TYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL--------GTKFYPSDVYISYLPL 306 (615)
Q Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~lPl 306 (615)
.+.+....... ........++++++|+|||||||.||||++||+++.+.+..... .+.+...+++++..|+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (562)
T 3ite_A 155 SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASR 233 (562)
T ss_dssp HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCT
T ss_pred hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCc
Confidence 22233222211 12223456788999999999999999999999999887765432 2457788999999999
Q ss_pred HHHHHHHHHHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHH
Q 007169 307 AHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKK 384 (615)
Q Consensus 307 ~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 384 (615)
+|..++...+.++..|+++++.+ ..+..+.+.++++++|++.++|++++.+...
T Consensus 234 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------------------------ 289 (562)
T 3ite_A 234 AFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------------------------ 289 (562)
T ss_dssp TSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------------------------
T ss_pred hhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------------------------
Confidence 99998887888999999998865 2457788999999999999999987654220
Q ss_pred HHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCC-CCCCCC
Q 007169 385 QAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDE-GDNLSG 463 (615)
Q Consensus 385 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~-~~~~~~ 463 (615)
....++||.+++||+++++++.+++++.++++++++||+||++..++.... .+...+
T Consensus 290 ----------------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 347 (562)
T 3ite_A 290 ----------------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPDSDTR 347 (562)
T ss_dssp ----------------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTTSCTT
T ss_pred ----------------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCCCCCc
Confidence 001158999999999999999999998889999999999999876655433 335667
Q ss_pred CcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCC--eeecccEEEEecCCcEEEE
Q 007169 464 HVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDG--WFHTGDIGMWIPGGRLKII 541 (615)
Q Consensus 464 ~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~g--w~~TGDlg~~~~dG~l~i~ 541 (615)
++|+|+++++++|+|++++..++.|+ .|||+|+|+++++|||++|+.|+..+ .+| ||+|||+|++|+||+|+|+
T Consensus 348 ~~G~p~~~~~~~i~d~~~~~~~~~g~---~GEl~v~g~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~ 423 (562)
T 3ite_A 348 CIGHPLGDSVAHVLAPGSNEHVKKGM---AGELVIEGSLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFL 423 (562)
T ss_dssp EEEEECTTCEEEEECTTSSCBCCTTS---CEEEEEESTTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEE
T ss_pred cccccCCCCeEEEEeCCCCCCCCCCC---ceEEEEeccccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEE
Confidence 89999999999999977777788887 89999999999999999999998876 455 9999999999999999999
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcC-CCcceEEEEeeCCC---C-eEEEEEEe
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKC-KFVGQCFVYGDSFN---S-ALVAIVSV 591 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~-p~V~~~~V~g~~~~---~-~~va~vv~ 591 (615)
||+||+||+ +|++|+|.|||++|.++ |.|.+++|++.+++ + .++++|..
T Consensus 424 GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~ 477 (562)
T 3ite_A 424 GRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVAS 477 (562)
T ss_dssp EEC----------------------------------------------------
T ss_pred ccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEec
Confidence 999999996 99999999999999998 78889998886644 2 34555543
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.3e-66 Score=618.89 Aligned_cols=441 Identities=21% Similarity=0.272 Sum_probs=373.3
Q ss_pred CCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHH
Q 007169 78 IGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHA 157 (615)
Q Consensus 78 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 157 (615)
..++.++|++.++++||++|+.+. + +.+||+||+++++++|++|.+.|+++|++|+|+++|+++|+++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 378999999999999999999753 2 3599999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECCCCCCCCCCCcCCCceEeeHH
Q 007169 158 CSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGGIDDQIPSLPITTGVQILTYS 237 (615)
Q Consensus 158 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 237 (615)
|+++|+++|||+|.++.+++.++++++++++++++....+.+. .++....++.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~------------------ 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT------------------ 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG------------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc------------------
Confidence 9999999999999999999999999999999999876543321 122222333332210
Q ss_pred HHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHH
Q 007169 238 NLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVM 317 (615)
Q Consensus 238 ~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~ 317 (615)
.. .. ....+.....++++++|+|||||||.||||+++|+++.+. ......+++.++|+++.+.|++|..+....+.
T Consensus 592 ~~-~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~ 667 (1304)
T 2vsq_A 592 RF-EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYA 667 (1304)
T ss_dssp GG-GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHH
T ss_pred cc-cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHHHHHH
Confidence 00 00 1111233457899999999999999999999999999876 44455678899999999999999998888888
Q ss_pred HHHhCcEEEEec----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCC
Q 007169 318 TVYSGVAVGFYQ----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNP 393 (615)
Q Consensus 318 ~l~~G~~i~~~~----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 393 (615)
+++.|+++++.+ .++..+.+.|+++++|++.++|++++.+.+....
T Consensus 668 ~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------------ 717 (1304)
T 2vsq_A 668 SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------------ 717 (1304)
T ss_dssp HHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------------
T ss_pred HHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------------
Confidence 999999999986 5899999999999999999999999988652000
Q ss_pred CchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC-CccccccccccccccccccCCC----CCCCCCcCCC
Q 007169 394 SPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG-GRVTEGYGMTETSCLISQLDEG----DNLSGHVGSP 468 (615)
Q Consensus 394 ~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g-~~v~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p 468 (615)
.+ .+||.+++||+++++++.+.+.+.++ ++++|+||+||++..++..... .....++|+|
T Consensus 718 -------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p 782 (1304)
T 2vsq_A 718 -------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP 782 (1304)
T ss_dssp -------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEE
T ss_pred -------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCcee
Confidence 00 37999999999999999999888774 7899999999998766544322 2345689999
Q ss_pred CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccC------CCCeeecccEEEEecCCcEEEEc
Q 007169 469 NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVID------EDGWFHTGDIGMWIPGGRLKIID 542 (615)
Q Consensus 469 ~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~------~~gw~~TGDlg~~~~dG~l~i~G 542 (615)
+++++++|+| ++++.++.|. .|||||+|+++++||+|+|+.|+++|. .++||+|||+|++++||.|+|+|
T Consensus 783 ~~~~~~~i~d-~~~~~~p~G~---~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~G 858 (1304)
T 2vsq_A 783 ISNASVYILN-EQSQLQPFGA---VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAG 858 (1304)
T ss_dssp CTTEEEEEEC-TTSCBCCTTC---CEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEE
T ss_pred eCCCEEEEEC-CCcCCCCCCC---ceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEc
Confidence 9999999999 6678888887 899999999999999999999999993 34599999999999999999999
Q ss_pred cCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC----HHHHHHHHHHc
Q 007169 543 RKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD----QDALKAWAASE 603 (615)
Q Consensus 543 R~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~----~~~l~~~~~~~ 603 (615)
|+||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. ..++|+|+++ .++++++++++
T Consensus 859 R~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~ 925 (1304)
T 2vsq_A 859 RIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQ 925 (1304)
T ss_dssp EGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999998 8999999999999999999999999997643 5899999964 57899998875
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=8.9e-63 Score=533.03 Aligned_cols=400 Identities=18% Similarity=0.219 Sum_probs=318.9
Q ss_pred CCCCHHHHHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHH
Q 007169 77 EIGTTHDNFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDH 156 (615)
Q Consensus 77 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 156 (615)
...|+.++|+++++++||++|+.+....++..+..+++||+||.++++++|++|.+.|+ +||+|+|+++|+++|++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999998862111223445789999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCeEEecCC---CCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCc--eEEEEECCCCCCCCCCCcCCCc
Q 007169 157 ACSAYSFISVPLYD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTV--RLIVVIGGIDDQIPSLPITTGV 231 (615)
Q Consensus 157 A~~~~G~v~vpl~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l--~~ii~~~~~~~~~~~~~~~~~~ 231 (615)
||+++|+++|||++ .++.+++.+++++++++++|++....+.+.+.....+.. ..++.++...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 788999999999999999999998887777655443322 1233322211
Q ss_pred eEeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCC------CcEEEEcCC
Q 007169 232 QILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYP------SDVYISYLP 305 (615)
Q Consensus 232 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~------~d~~l~~lP 305 (615)
... ..........++++++|+|||||||.||||++||+++++.+......+.+.+ +|++++++|
T Consensus 169 ---------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------ccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 000 1112233457889999999999999999999999999998887766666666 999999999
Q ss_pred hHHHHHHHH-HHHHHHhCcEEEEec-----CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHH
Q 007169 306 LAHIYERAN-QVMTVYSGVAVGFYQ-----GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAA 379 (615)
Q Consensus 306 l~h~~~~~~-~~~~l~~G~~i~~~~-----~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a 379 (615)
++|.+++.. .+.+++.|+++++.+ .++..+++.++++++| +..+|+++..++......
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~--------------- 302 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD--------------- 302 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT---------------
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc---------------
Confidence 999999875 567899999999986 3899999999999999 889999988876531000
Q ss_pred HHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhC------Ccccccccccccccccc
Q 007169 380 YNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFG------GRVTEGYGMTETSCLIS 453 (615)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g------~~v~~~YG~TE~~~~~~ 453 (615)
........++||.+++||+++++++.+++++.|+ +.++++||+||++..++
T Consensus 303 -----------------------~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 359 (480)
T 3t5a_A 303 -----------------------DDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVA 359 (480)
T ss_dssp -----------------------GGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEE
T ss_pred -----------------------ccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEe
Confidence 0011112268999999999999999999999874 36999999999998776
Q ss_pred ccCCCC-------------------------CCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCccccccc
Q 007169 454 QLDEGD-------------------------NLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYY 508 (615)
Q Consensus 454 ~~~~~~-------------------------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~ 508 (615)
...... ...+++|+|++ ++++|+|.+++..++.|+ .|||+|+|+++++|||
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~---~GEl~v~g~~v~~GY~ 435 (480)
T 3t5a_A 360 TSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT---VGEIWVHGDNVANGYW 435 (480)
T ss_dssp ECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB---CEEEEEESTTSCCCBT
T ss_pred ecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC---EEEEEEeCCccccccc
Confidence 554322 23458999999 999999977678888887 8999999999999999
Q ss_pred CChhhhhhccC-----------CCCeeecccEEEEecCCcEEEEcc
Q 007169 509 KDEIQTKEVID-----------EDGWFHTGDIGMWIPGGRLKIIDR 543 (615)
Q Consensus 509 ~~~~~t~~~~~-----------~~gw~~TGDlg~~~~dG~l~i~GR 543 (615)
++|++|+++|+ .+|||+|||+|++| ||+|+|+||
T Consensus 436 ~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 436 QKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred cCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999995 57899999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.7e-47 Score=393.18 Aligned_cols=272 Identities=17% Similarity=0.149 Sum_probs=231.3
Q ss_pred CCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccCcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecCChHH
Q 007169 255 PDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLGTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQGDNMK 334 (615)
Q Consensus 255 ~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~~~~~ 334 (615)
.||+++|+|||||||.||||++||+++++.+......+++.++|++++++|++|++++...+.++..|+++++... ...
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~-~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP-TAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC-CSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc-ccc
Confidence 4789999999999999999999999999999888888999999999999999999999888889999999988762 223
Q ss_pred HHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhcCCCCCchhhHHhHHHHHhhcCCcEE
Q 007169 335 LMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAMLSGKNPSPMWDRLVFNKIKDKLGGRVR 414 (615)
Q Consensus 335 l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~lr 414 (615)
.++.++++++|++.++|+++..+++.... ....++||
T Consensus 115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-------------------------------------------~~~l~~lr 151 (358)
T 4gs5_A 115 PLAGLDHADFDFVAMVPMQLQSILENSAT-------------------------------------------SGQVDRLG 151 (358)
T ss_dssp TTTTCSSCCCSEEEECHHHHHHHHHCTTT-------------------------------------------GGGGGGGC
T ss_pred HHHHHHHhCCeEEEcChHHHHHhhccccc-------------------------------------------cccCCcce
Confidence 46678899999999999999988762100 00114899
Q ss_pred EEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcCCCCCCeeEEEeecCCCCCCCCCCCCCcc
Q 007169 415 FMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVGSPNAACEIKLVDVPEMNYTSEDQPCPRG 494 (615)
Q Consensus 415 ~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~~~~G 494 (615)
.+++||+++++++.+++++ ++++++++||+||+++.++.........+.+|.+.|++++++.+ .|
T Consensus 152 ~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~--------------~G 216 (358)
T 4gs5_A 152 KVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE--------------RG 216 (358)
T ss_dssp SEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT--------------TS
T ss_pred EEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccccceeeccCCCeEEEecC--------------cC
Confidence 9999999999999999987 59999999999999988877766667788999999999998754 79
Q ss_pred eEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCCcEEEEccCCCeEEcCCeeeechHHHHHHH---hcCCCc
Q 007169 495 EICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGGRLKIIDRKKNIFKLAQGEYIAAEKIENVY---AKCKFV 571 (615)
Q Consensus 495 Ei~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG~l~i~GR~~d~ikl~~G~~v~p~~IE~~l---~~~p~V 571 (615)
||+++|+.+ .+|||+|||+|++|+|| ++++||+||+||+ +|++|+|.+||++| .+||+|
T Consensus 217 el~~~g~~~----------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~p~V 278 (358)
T 4gs5_A 217 CLHISGAVT----------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAAVFHHLNI 278 (358)
T ss_dssp EEEEESGGG----------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHHHHHHHTC
T ss_pred ceEEecccc----------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHHhccCCCc
Confidence 999998742 68999999999999988 6778999999996 89999999999887 468999
Q ss_pred ceEEEE-eeCCC---CeEEEEEEeCH-----HHHHHHHHHc
Q 007169 572 GQCFVY-GDSFN---SALVAIVSVDQ-----DALKAWAASE 603 (615)
Q Consensus 572 ~~~~V~-g~~~~---~~~va~vv~~~-----~~l~~~~~~~ 603 (615)
.+++|+ +.+++ +.++|+|++.. ++++++|+++
T Consensus 279 ~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~ 319 (358)
T 4gs5_A 279 GNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSR 319 (358)
T ss_dssp CCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhh
Confidence 998876 44443 47888888653 5788888875
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.3e-44 Score=385.70 Aligned_cols=298 Identities=15% Similarity=0.163 Sum_probs=240.9
Q ss_pred EeeHHHHHhcCccCCCCCCCCCC-CCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc---cCcccCCCcEEEEcCChHH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKP-DDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPLAH 308 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl~h 308 (615)
+.+.+++.+... .......+ +++++|+|||||||.||||++||+++.+.+.... ..+++.++|++++++|+.|
T Consensus 65 ~~~~~~l~~~~p---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (436)
T 3qov_A 65 FTTKSDMRANYP---FGLVAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGM 141 (436)
T ss_dssp CBCHHHHHHTTT---TTTCCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTT
T ss_pred CCCHHHHHhcCC---CccccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECccccc
Confidence 345566654321 12233456 8999999999999999999999999977665543 3357889999999999977
Q ss_pred HHHHH-HHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Q 007169 309 IYERA-NQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQA 386 (615)
Q Consensus 309 ~~~~~-~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 386 (615)
..+.. ..+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++.......
T Consensus 142 ~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 201 (436)
T 3qov_A 142 FTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGI-------------------- 201 (436)
T ss_dssp CHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC--------------------
T ss_pred chhHHHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC--------------------
Confidence 66655 4567899999999876 7999999999999999999999999999874322110
Q ss_pred HhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCccccccccccccccccccCCCCCCCCCcC
Q 007169 387 MLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCLISQLDEGDNLSGHVG 466 (615)
Q Consensus 387 ~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG 466 (615)
.. ..+++|.+++||+++++++.+++++.||++++++||+||+++.++..... .....|
T Consensus 202 -----~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~ 259 (436)
T 3qov_A 202 -----DP---------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMH 259 (436)
T ss_dssp -----CT---------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEE
T ss_pred -----Cc---------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeE
Confidence 00 01489999999999999999999999999999999999996542222111 112366
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecCC------c---
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPGG------R--- 537 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~dG------~--- 537 (615)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++| +
T Consensus 260 ~~~~~~~v~i~d~~~g~~~~~g~---~Gel~v~~~------------~~~~~-~~~~y~TGDl~~~~~~gc~cG~~~~~i 323 (436)
T 3qov_A 260 FWEDCYLVEIIDPETGEPVPEGE---IGELVLTTL------------DREMM-PLIRYRTRDLTRILPGKCPCGRTHLRI 323 (436)
T ss_dssp ECTTTEEEEEECTTTCSBCSTTC---CEEEEEEES------------SCCSS-CCCSEEEEEEECEECSCCTTCCCSCEE
T ss_pred EccCceEEEEEECCCCCCCCCCC---ceEEEEecc------------CcCCc-eEEEEEcCCEEEEcCCCCCCCCCcccc
Confidence 77889999999988889998887 899999983 34455 78999999999999998 5
Q ss_pred EEEEccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeC
Q 007169 538 LKIIDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVD 592 (615)
Q Consensus 538 l~i~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~ 592 (615)
++|+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|+++
T Consensus 324 l~i~GR~dd~ik~-~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~ 380 (436)
T 3qov_A 324 DRIKGRSDDMFII-KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS 380 (436)
T ss_dssp CCCCCBSSSCEEE-TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CcccCccCCEEEE-CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc
Confidence 6999999999998 899999999999999999999999998664 36899999985
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.3e-44 Score=383.82 Aligned_cols=308 Identities=17% Similarity=0.135 Sum_probs=245.3
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhc---cCcccCCCcEEEEcCCh-HH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGAT---LGTKFYPSDVYISYLPL-AH 308 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~lPl-~h 308 (615)
+.+.+++.+... .......++++++|+|||||||.||||++||+++...+.... ..+++.++|++++.+|+ +|
T Consensus 70 ~~~~~~l~~~~~---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 70 FTTKGDLRDSYP---FGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146 (437)
T ss_dssp CBCHHHHHHTTT---TTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCCHHHHHhcCC---CccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEccccccc
Confidence 355666654431 112335678999999999999999999999999887654432 24678899999999998 78
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
..++...+.++..|+++++.+ +++..+++.|++++||+++++|+++..|++......
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~---------------------- 204 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQG---------------------- 204 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT----------------------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcC----------------------
Confidence 888777788899999998776 699999999999999999999999999887432110
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (615)
... ..+++|.+++||+++++++.+++++.||+++++.||+||+++. ++...+. ...+ ++
T Consensus 205 ---~~~---------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~~ 264 (437)
T 2y27_A 205 ---LDP---------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVE-TKDG-PT 264 (437)
T ss_dssp ---CCG---------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTT-TCSS-CE
T ss_pred ---CCc---------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCC-CCCc-ee
Confidence 000 0148999999999999999999999899999999999998433 3322221 1112 55
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec-CCcE-----EE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP-GGRL-----KI 540 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~-dG~l-----~i 540 (615)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|++++ +|++ +|
T Consensus 265 ~~~~~~~~~i~d~~~g~~~~~g~---~Gel~v~~~------------t~~~~-~~~~y~TGDl~~~~~~~G~~~~~i~~i 328 (437)
T 2y27_A 265 IWEDHFYPEIIDPETGEVLPDGE---LGELVFTSL------------TKEAL-PIIRYRTRDLTRLLPGTARTMRRMEKI 328 (437)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCCSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCceEEEEEcCCCCCCCCCCC---ccEEEEecC------------CcCCc-hhheeecCCEEEEeCCCCCCccccCcc
Confidence 67789999999977788888887 899999982 44556 689999999999999 6986 99
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH---------HHHHHHHHH
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ---------DALKAWAAS 602 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~---------~~l~~~~~~ 602 (615)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.+++++
T Consensus 329 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~ 401 (437)
T 2y27_A 329 TGRSDDMMIV-RGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAY 401 (437)
T ss_dssp CEEGGGCEEE-TTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHH
T ss_pred ccccCCeEEE-CCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHH
Confidence 9999999997 899999999999999999999998887542 368999999864 346666654
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.9e-44 Score=382.66 Aligned_cols=308 Identities=15% Similarity=0.121 Sum_probs=245.7
Q ss_pred EeeHHHHHhcCccCCCCCCCCCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc---CcccCCCcEEEEcCCh-HH
Q 007169 233 ILTYSNLLSQGRSNLQPFSPPKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPL-AH 308 (615)
Q Consensus 233 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl-~h 308 (615)
+.+.+++.+... .......++++++|+|||||||.||||++||+++...+..... .+++.++|++++.+|+ +|
T Consensus 72 ~~~~~~l~~~~p---~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 148 (443)
T 2y4o_A 72 FSTKNDLRDNYP---FGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLF 148 (443)
T ss_dssp CBCHHHHHTTTT---TTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSS
T ss_pred CCcHHHHHhhCC---CcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCccc
Confidence 456666654431 1123356789999999999999999999999998876544332 4678899999999999 57
Q ss_pred HHHHHHHHHHHHhCcEEEEec-CChHHHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Q 007169 309 IYERANQVMTVYSGVAVGFYQ-GDNMKLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQAM 387 (615)
Q Consensus 309 ~~~~~~~~~~l~~G~~i~~~~-~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 387 (615)
..++...+.++..|+++++.+ +++..+++.|+++++|+++++|+++..|++......
T Consensus 149 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~---------------------- 206 (443)
T 2y4o_A 149 TGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQG---------------------- 206 (443)
T ss_dssp HHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTT----------------------
T ss_pred ccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcC----------------------
Confidence 777777778899999998876 799999999999999999999999999877432110
Q ss_pred hcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHHHHhCCcccccccccccccc-ccccCCCCCCCCCcC
Q 007169 388 LSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLKICFGGRVTEGYGMTETSCL-ISQLDEGDNLSGHVG 466 (615)
Q Consensus 388 ~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~-~~~~~~~~~~~~~vG 466 (615)
.. ...+++|.+++||+++++++.+++++.||+++++.||+||+++. +....+. ...+ .+
T Consensus 207 ---~~---------------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~-~~~g-~~ 266 (443)
T 2y4o_A 207 ---MD---------------PAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVE-TKDG-PV 266 (443)
T ss_dssp ---CC---------------GGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTT-TCCS-EE
T ss_pred ---CC---------------cccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCC-CCCc-eE
Confidence 00 00148999999999999999999999899999999999997443 3222211 1112 45
Q ss_pred CCCCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC-CcE-----EE
Q 007169 467 SPNAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-GRL-----KI 540 (615)
Q Consensus 467 ~p~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-G~l-----~i 540 (615)
.|.++++++|+|++++..++.|+ .|||+|+|. |++.| .++||+|||+|+++++ |++ +|
T Consensus 267 ~~~~~~~~~i~d~~~g~~~~~G~---~Gel~v~~~------------t~~~~-p~~~y~TGDl~~~~~~cG~~~~~l~~i 330 (443)
T 2y4o_A 267 IWEDHFYPEIIDPVTGEVLPDGS---QGELVFTSL------------TKEAM-PVIRYRTRDLTALLPPTARAMRRLAKI 330 (443)
T ss_dssp ECTTTEEEEEECTTTCCBCCTTC---CEEEEEEES------------SCSSS-CCSSEEEEEEECEECCSSSSSCEECCC
T ss_pred EccCCeEEEEEcCCCCCCCCCCC---ceEEEEeCC------------CcccC-hhheeecCCEEEEcCCCCCCccccCcc
Confidence 56789999999977788888887 899999983 44556 6899999999999999 987 89
Q ss_pred EccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCC---CCeEEEEEEeCH-----------HHHHHHHHH
Q 007169 541 IDRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSF---NSALVAIVSVDQ-----------DALKAWAAS 602 (615)
Q Consensus 541 ~GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~---~~~~va~vv~~~-----------~~l~~~~~~ 602 (615)
+||+||+||+ +|++|+|.+||++|.+||+|.+++|++.++ .+.++|+|++++ +++.+++++
T Consensus 331 ~GR~~d~i~~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~ 405 (443)
T 2y4o_A 331 TGRSDDMLIV-RGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQH 405 (443)
T ss_dssp CEESSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccCCeEEE-CCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHH
Confidence 9999999997 899999999999999999999999887542 357899999876 356666654
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=5.1e-31 Score=274.25 Aligned_cols=237 Identities=15% Similarity=0.150 Sum_probs=176.1
Q ss_pred CCCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhh---ccCcccCCCcEEEEcCCh-HHHHHHHHHHHHHHhCcEEEEe
Q 007169 253 PKPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGA---TLGTKFYPSDVYISYLPL-AHIYERANQVMTVYSGVAVGFY 328 (615)
Q Consensus 253 ~~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~---~~~~~~~~~d~~l~~lPl-~h~~~~~~~~~~l~~G~~i~~~ 328 (615)
..++++++|+|||||||.||||+++|+++...+.+. ....++.++|++++.+|+ +|.+++...+.++..|+.++..
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 467899999999999999999999999999888744 344678899999999999 9999998888889999944333
Q ss_pred cCChH-----------------------HHHHHHHhhCCeEEeechHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHH
Q 007169 329 QGDNM-----------------------KLMDDMAALRPTVFCSVPRLYNRIYAGITSAVRTSGGLRERLFNAAYNAKKQ 385 (615)
Q Consensus 329 ~~~~~-----------------------~l~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 385 (615)
.+++. .+++.++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~--------------------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV--------------------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH---------------------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh---------------------
Confidence 36777 7788999999999999999999987631100
Q ss_pred HHhcCCCCCchhhHHhHHHHHhhcCCcEEEEEEcCCCCcHHHHHHHH-HHh-CCccccccccccccccccccCCCCCCCC
Q 007169 386 AMLSGKNPSPMWDRLVFNKIKDKLGGRVRFMGSGASPLSPDVLDFLK-ICF-GGRVTEGYGMTETSCLISQLDEGDNLSG 463 (615)
Q Consensus 386 ~~~~~~~~~~~~d~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~-~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~ 463 (615)
....+++|.+++||+++++++.++++ +.| ++++++.||+||+++++..... .
T Consensus 227 ---------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~-----~ 280 (369)
T 3hgu_A 227 ---------------------LQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI-----T 280 (369)
T ss_dssp ---------------------HHHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-----C
T ss_pred ---------------------ccccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-----c
Confidence 00013899999999999999999999 899 8999999999999876543221 1
Q ss_pred CcCCC------CCCeeEEEeecCCCCCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC--
Q 007169 464 HVGSP------NAACEIKLVDVPEMNYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG-- 535 (615)
Q Consensus 464 ~vG~p------~~~~ev~ivd~~~~~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d-- 535 (615)
++|.| .++++++|+|+++++.++.|+ .|||+|++.. ++.+ --+|+|||++.+.+.
T Consensus 281 ~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~---~GEl~vt~l~------------~~~~--l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 281 SESQQVIYDSFSPFITYDVVDSITAQTVEYGE---RGNVIVTHLS------------PWAF--YPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TTCSSCEEECCTTTEEEEEECTTTCSBCCTTC---EEEEEEEEEE------------TTEE--EEEEEEEEEEEEECCST
T ss_pred cCCCcccccCCCCCeEEEEECCCCCcCCCCCC---ceEEEEEEcC------------cccc--cccccCCceEEEecCCC
Confidence 58999 999999999976888998887 9999999742 1111 124778888777543
Q ss_pred C-------cEEEEccCCCeEEcCCee
Q 007169 536 G-------RLKIIDRKKNIFKLAQGE 554 (615)
Q Consensus 536 G-------~l~i~GR~~d~ikl~~G~ 554 (615)
| .+..++|.++..|| .|.
T Consensus 344 g~~~d~~~~v~~~~~~~~~~~i-~gv 368 (369)
T 3hgu_A 344 GFAGDRLADIEPLKISEGRKVI-EGV 368 (369)
T ss_dssp TCSSCEEEEEEECC------------
T ss_pred CCcCcccccceeccccCCCcee-eec
Confidence 2 34556677777776 454
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.96 E-value=2.1e-08 Score=107.28 Aligned_cols=163 Identities=12% Similarity=0.119 Sum_probs=96.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCC-CCCC-eeEEEeecCCC------
Q 007169 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAA-CEIKLVDVPEM------ 482 (615)
Q Consensus 413 lr~i~~gg~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~-~ev~ivd~~~~------ 482 (615)
+..+++||. ......++..+ +.+++ .+|++||+... .+......++..+. .+|+ .=+..++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~ 381 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECYFG--LNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSR 381 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCS
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCcccccceeee--eecCCCCCcccCceeecCCcEEEEEEecccccccccc
Confidence 555666662 44445566555 56766 99999997422 22111111122222 1222 22334443332
Q ss_pred ---------CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEE
Q 007169 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFK 549 (615)
Q Consensus 483 ---------~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ik 549 (615)
..+..|+ .+||.|... .|.|+ |++||+.+++. ...+.|+||.|++|.
T Consensus 382 ~~~~~~v~l~eVe~G~---~YelViTt~---~GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~ 441 (609)
T 4b2g_A 382 DSPPRLVDLAHVEVGK---EYELVITTY---AGLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLS 441 (609)
T ss_dssp SSCCCCEEGGGCCTTC---EEEEEEECT---TSCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCccccHhHcCCCC---eEEEehhhh---hhhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEE
Confidence 1223343 788988653 35542 99999999984 468999999999999
Q ss_pred cCCeeeechHHHHHHHhc------CCC--cceEEEEeeCCC--CeEEEEEEe---------CHHHHHHHHH
Q 007169 550 LAQGEYIAAEKIENVYAK------CKF--VGQCFVYGDSFN--SALVAIVSV---------DQDALKAWAA 601 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~------~p~--V~~~~V~g~~~~--~~~va~vv~---------~~~~l~~~~~ 601 (615)
+ .|+++.+++||+++.+ ..+ |.|-.++.+... .+-+.++.+ +++.+.++|.
T Consensus 442 ~-~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~ 511 (609)
T 4b2g_A 442 I-DSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCL 511 (609)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEEEESCGGGCCCHHHHHHHHH
T ss_pred c-cccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEEecccccCCCCHHHHHHHHH
Confidence 7 8999999999999963 223 455555554322 244433332 4566666654
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.88 E-value=1.3e-07 Score=100.96 Aligned_cols=130 Identities=13% Similarity=0.142 Sum_probs=81.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCCC-CCC-eeEEEeecCCC------
Q 007169 413 VRFMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGSP-NAA-CEIKLVDVPEM------ 482 (615)
Q Consensus 413 lr~i~~gg~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~-~ev~ivd~~~~------ 482 (615)
+..+++||. ......++..+ +.+++ .+|+.||+... .+......+..+|.. +|+ .=+..++.++.
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~~v 376 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFG--INLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDVV 376 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEE--ECSCTTSCGGGCCEEECTTSSEEEEEECSTTCCSSCE
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceee--eccCCCCCcccCceeecCCcEEEEEEeccccCCCcEe
Confidence 666666773 44455566555 67777 99999996422 221111111222221 222 22344443322
Q ss_pred --CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEec----CCcEEEEccCCCeEEcCCeeee
Q 007169 483 --NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIP----GGRLKIIDRKKNIFKLAQGEYI 556 (615)
Q Consensus 483 --~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~----dG~l~i~GR~~d~ikl~~G~~v 556 (615)
..+..|+ .+||.|...+ |.|+ |++||+.++.. ...+.|+||.|+++.+ .||++
T Consensus 377 ~l~eVe~G~---~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl 435 (581)
T 4eql_A 377 DLEDVKLGC---TYEPVVTNFA---GLYR--------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKT 435 (581)
T ss_dssp EGGGCCTTC---EEEEEEECSS---SCCS--------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCE
T ss_pred CHHHcCCCc---eEEEEEeecc---ceee--------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeEC
Confidence 1123343 7899987642 3321 89999999986 3579999999999997 89999
Q ss_pred chHHHHHHHhcC
Q 007169 557 AAEKIENVYAKC 568 (615)
Q Consensus 557 ~p~~IE~~l~~~ 568 (615)
++++||+++.+.
T Consensus 436 ~~~~v~~al~~a 447 (581)
T 4eql_A 436 NEEDLFKAVSQA 447 (581)
T ss_dssp EHHHHHHHHHHC
T ss_pred CHHHHHHHHHHH
Confidence 999999999744
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.75 E-value=1.1e-07 Score=101.23 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=95.1
Q ss_pred CcEE---EEEEcCCCCcHHHHHHHHHHh-CCccc-cccccccccccccccCCCCCCCCCcCC-CCCCe-eEEEeecCCC-
Q 007169 411 GRVR---FMGSGASPLSPDVLDFLKICF-GGRVT-EGYGMTETSCLISQLDEGDNLSGHVGS-PNAAC-EIKLVDVPEM- 482 (615)
Q Consensus 411 ~~lr---~i~~gg~~l~~~~~~~~~~~~-g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-ev~ivd~~~~- 482 (615)
.+++ .+++|+ + ......++..+ +.+++ .+|++||+... .+......++.++. .+|+. =+..+..++.
T Consensus 302 Pnl~~i~~~~~G~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~g--i~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGS--M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIA--ANVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGG--G-GGGHHHHHHHHTTSCEEECCEEETTEEEE--ECCCTTSCTTTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCC--h-HHHHHHHHHHcCCCccccCceeccceeee--eecCCCCCccccceeecCCcEEEEEEeccccc
Confidence 4664 344443 2 33445566555 67777 99999997422 22211222222222 22222 1223332221
Q ss_pred ---------CCCCCCCCCCcceEEEecCcccccccCChhhhhhccCCCCeeecccEEEEecC----CcEEEEccCCCeEE
Q 007169 483 ---------NYTSEDQPCPRGEICVRGPLIFKGYYKDEIQTKEVIDEDGWFHTGDIGMWIPG----GRLKIIDRKKNIFK 549 (615)
Q Consensus 483 ---------~~~~~~~~~~~GEi~vrg~~v~~GY~~~~~~t~~~~~~~gw~~TGDlg~~~~d----G~l~i~GR~~d~ik 549 (615)
..+..|+ .+||.|...+ |-|. |++||+.++..- ..+.|+||.++++.
T Consensus 377 ~~~~~~v~l~eve~G~---~YelviTt~~---GL~R--------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~ 436 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGE---EYEVVITNYA---GLYR--------------YRLGDVVKVIGFYNNTPQLKFICRRNLILS 436 (581)
T ss_dssp ---CCCEEGGGCCTTC---EEEEEEESTT---SCSS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBC
T ss_pred CCCCceeeHHHcCCCC---eEEEEEeecc---ceee--------------EEcCCEEEEecccCCCcEEEEEeecCCeEE
Confidence 1233444 7999997642 3331 899999999742 47999999999999
Q ss_pred cCCeeeechHHHHHHHhc------CCC--cceEEEEeeCCC--CeEEEEEEe----CHHHHHHHH
Q 007169 550 LAQGEYIAAEKIENVYAK------CKF--VGQCFVYGDSFN--SALVAIVSV----DQDALKAWA 600 (615)
Q Consensus 550 l~~G~~v~p~~IE~~l~~------~p~--V~~~~V~g~~~~--~~~va~vv~----~~~~l~~~~ 600 (615)
+ .|+++++.+||+++.+ ..+ |.|-.++.+... .+-+.++.. +++.+.++|
T Consensus 437 ~-~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~~~~~~~~l~~~~ 500 (581)
T 4epl_A 437 I-NIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 500 (581)
T ss_dssp S-SSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEESSCCCHHHHHHHH
T ss_pred e-eeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeecCCCCHHHHHHHH
Confidence 7 8999999999999964 223 556666665432 344444553 445566554
No 40
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=98.59 E-value=5e-08 Score=81.28 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=43.2
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEeC
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSVD 592 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~~ 592 (615)
.|.|||||+ +|.||+|.+||+++.+||+|.+++|++.++. +.++++|+..
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~ 53 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELS 53 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEe
Confidence 389999997 8999999999999999999999999886543 4677888764
No 41
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.55 E-value=6.7e-08 Score=80.43 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=42.4
Q ss_pred ccCCCeEEcCCeeeechHHHHHHHhcCCCcceEEEEeeCCC---CeEEEEEEe
Q 007169 542 DRKKNIFKLAQGEYIAAEKIENVYAKCKFVGQCFVYGDSFN---SALVAIVSV 591 (615)
Q Consensus 542 GR~~d~ikl~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~---~~~va~vv~ 591 (615)
||.||||++ +|+||+|.+||+++.+||+|.++++++.++. +.++++|++
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~ 52 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL 52 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE
Confidence 899999997 8999999999999999999998887765432 578888886
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.93 E-value=1.2 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.069 Sum_probs=89.3
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (615)
.++.++++.. ..|..|. ...+|.+.+...+..++..+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3455665543 2555443 34579999988888888888888999999999888853 3334557888999999887
Q ss_pred cCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
+.. ..++.+...+++.++.++++....+..+.+... ..+.++.+++-++
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 665 478899999999999999998887776655432 1246776666543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.80 E-value=1.3 Score=45.76 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=89.0
Q ss_pred CCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEec
Q 007169 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPL 168 (615)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl 168 (615)
++.++++.. ..|..|. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455565443 2555554 34579999988888888888888999999999888863 33445678888999998877
Q ss_pred CCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
... .++.+...+++.++.++++....+..+.+... ..+.++.+++-++
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 654 78899999999999999998887776655422 1256777766543
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.40 E-value=1.4 Score=45.48 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=89.9
Q ss_pred CCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEecC
Q 007169 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVPLY 169 (615)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vpl~ 169 (615)
+.++++.. ..|..|. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+..+++++..|+.+++..
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 45565544 2555443 34579999998888888888889999999999988753 444556788899999988765
Q ss_pred CCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
. ..++.+...+++.++.+++.....+..+.+... .++.++.+++-++
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 216 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAE 216 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESS
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCC
Confidence 4 467899999999999999998887776655422 1456777776554
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=81.13 E-value=27 Score=36.82 Aligned_cols=120 Identities=9% Similarity=-0.060 Sum_probs=85.0
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HH-HHHHHHhcCCeEE
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LI-VDHACSAYSFISV 166 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~--~~-~~lA~~~~G~v~v 166 (615)
.|+.+|++.. ..|..|. ...+|.+.+...+..... ..++.++|++...+|-...+ .. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777655 2444332 345799988776655544 34788999998888876443 22 4788899999887
Q ss_pred ecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh----ccCCCceEEEEECC
Q 007169 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (615)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~ 217 (615)
... ...++.+...+++.++..++.....+..+.+.. ..+++++.+++-++
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 654 567899999999999999999888777665432 24567887776554
No 46
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=79.63 E-value=30 Score=35.93 Aligned_cols=119 Identities=15% Similarity=0.027 Sum_probs=83.4
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (615)
.++.+|++.. ..|..|. ...+|.+.+...+..+.. ..++.++|++..++|-...+ +..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777655 2454443 345799888776665544 45899999998888775332 33467788899988766
Q ss_pred CCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccC-CCceEEEEEC
Q 007169 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEV-PTVRLIVVIG 216 (615)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~-~~l~~ii~~~ 216 (615)
. ...++.+...+++.++..+++....+..+.+..... ..++.+++-+
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG 283 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGG 283 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeC
Confidence 5 578999999999999999999988877776644322 2566655533
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=79.58 E-value=13 Score=39.52 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=82.0
Q ss_pred CCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEecC
Q 007169 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVPLY 169 (615)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vpl~ 169 (615)
+.+|++.. ..|..|. ...+|.+.+...+......+...++.++|++..+++-...+ ...+++++ .|+.++.+.
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66776654 2444332 34579998877766555443335788999998888775443 33456777 999887765
Q ss_pred CCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEEC
Q 007169 170 DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (615)
Q Consensus 170 ~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~ 216 (615)
...++.+...+++.++..+++....+..+.+... .++.++.+++-+
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 318 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcC
Confidence 5788999999999999999998887777665321 345677666543
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.45 E-value=24 Score=37.16 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=83.8
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH---HHHHHHhcCCeEE
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI---VDHACSAYSFISV 166 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~v~v 166 (615)
.++.+|++.. ..|..|. ...+|.+.+...+..++.. .++.++|++..++|-...+-. .+++++..|+.++
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3567777654 2444332 3457999888776665543 489999999999886654433 3678889999887
Q ss_pred ecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEECC
Q 007169 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (615)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (615)
... ...++.+...+++.++..+++....+..+.+... .++.++.+++-++
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGA 317 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCC
Confidence 654 4678889999999999999998877766655432 3466777776554
No 49
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.74 E-value=11 Score=37.64 Aligned_cols=105 Identities=12% Similarity=-0.043 Sum_probs=70.1
Q ss_pred cCCCceEEEEEeecCccCce--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HhHHHHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNR--PEWLIVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 167 (615)
.++.++.+.. ..|..|.. ..+|.+.+...+..++..+...|+.++|++..+++-+ .--+...+++...|+++++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3455566544 25554433 3468888888887777777778999999999988862 2223444555889996655
Q ss_pred cCCCCCHH-----------------------HHHHHHHhccceEEEEcccchHHHH
Q 007169 168 LYDTLGPD-----------------------AVKYIVNHASVQAVFCVPQTLNSLL 200 (615)
Q Consensus 168 l~~~~~~~-----------------------~l~~il~~~~~~~vi~~~~~~~~l~ 200 (615)
.. ..+. .+...+++.++.++++....+..+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 3444 6666889999999998877665553
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=76.39 E-value=31 Score=36.08 Aligned_cols=118 Identities=15% Similarity=0.065 Sum_probs=80.0
Q ss_pred CCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH--HHHHHHhcCCeEEec
Q 007169 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI--VDHACSAYSFISVPL 168 (615)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~--~~lA~~~~G~v~vpl 168 (615)
|+.+|++.. ..|..|. ...+|.+.+...+..++.. .++.++|++...+|-....-. .+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 466666654 2454443 3457999887777665544 489999999988887644333 345555 88888766
Q ss_pred CCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh----ccCCCceEEEEECC
Q 007169 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~~ 217 (615)
+...++.+...+++.++..+++....+..+.+.. ..++.++.+++-++
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 4578999999999999999999888776665432 24567776666443
No 51
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=73.49 E-value=19 Score=37.61 Aligned_cols=119 Identities=15% Similarity=0.090 Sum_probs=81.5
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEcCCCHhHH--HHHHHHHhcCCeE
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGI--SKGSCIGLYFVNRPEWL--IVDHACSAYSFIS 165 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv--~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~ 165 (615)
.|+.+|++.. ..|..|. ...+|.+.+...+..+.. ..++ .++|++..++|-....- ..+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4677777655 2444433 345788888766655443 3477 77888888887654432 4578889999998
Q ss_pred EecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh-c-----cCCCceEEEEEC
Q 007169 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-S-----EVPTVRLIVVIG 216 (615)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~-----~~~~l~~ii~~~ 216 (615)
+... ...++.+...+++.++.+++.....+..+.+.. . .++.++.+++-+
T Consensus 226 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG 281 (504)
T 1t5h_X 226 VVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAG 281 (504)
T ss_dssp EECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECC
T ss_pred EeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcC
Confidence 8765 467889999999999999999888877776543 1 245677666543
No 52
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.76 E-value=58 Score=34.87 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=83.0
Q ss_pred CCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHH---HHHHHHhcCCeEEe
Q 007169 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWLI---VDHACSAYSFISVP 167 (615)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~---~~lA~~~~G~v~vp 167 (615)
|+.+|++.. ..|..|. ...+|.+.+...+...... .++.++|++..+++-...+-. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 567777654 2444332 3457998887666655443 478999999999886544332 47888889998876
Q ss_pred cCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
... ..+..+...+++.++.++.+....+..+.+... .++.++.+++-++
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 654 577888889999999999998877766654322 4566787776554
No 53
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=72.47 E-value=33 Score=36.45 Aligned_cols=121 Identities=11% Similarity=-0.002 Sum_probs=80.9
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (615)
.++.+|++.. ..|..|. ...+|.+ +........ ....++.++|++..+++-....- ..+++++..|+..+.
T Consensus 204 ~~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 4566777654 2454443 2356888 443211111 14468899999988888765443 346788888998876
Q ss_pred cCC-CCCHHHHHHHHHhccceEEEEcccchHHHHhhh---ccCCCceEEEEECC
Q 007169 168 LYD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL---SEVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~~-~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~---~~~~~l~~ii~~~~ 217 (615)
... ...++.+...+++.++..++.....+..+.+.. ..++.++.+++-++
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe 332 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGE 332 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESS
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCC
Confidence 653 678999999999999999999888777766532 13466777776554
No 54
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=72.02 E-value=55 Score=33.95 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=77.2
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH--HHHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW--LIVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vp 167 (615)
.++.+|++.. ..|..|. ...+|.+.+...+..+.. ..++.++|++..++|-...+ ...+.+++..|..+++
T Consensus 158 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIH--TAAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEE--EEC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 4667776654 2454443 345789888776665544 45899999999888875433 2333344555555544
Q ss_pred cCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh--ccCCCceEEEEEC
Q 007169 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL--SEVPTVRLIVVIG 216 (615)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~--~~~~~l~~ii~~~ 216 (615)
. ...++.+...+++.++.+++.....+..+.+.. ..++.++.++.-+
T Consensus 233 ~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 233 A--KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp S--SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred c--ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccC
Confidence 3 678999999999999999999888777766542 2345566665443
No 55
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=71.50 E-value=16 Score=36.34 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=76.6
Q ss_pred HhcCCCceEEEEEeecCccCce--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEE
Q 007169 90 DTFRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISV 166 (615)
Q Consensus 90 ~~~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~v 166 (615)
+-++|.+|++.. -.|..|.. ..+|.+.+...+..++. ..++.++|++..++|-.... +..++.++..|+..+
T Consensus 33 ~w~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~ 107 (358)
T 4gs5_A 33 KWLGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELT 107 (358)
T ss_dssp HHHHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEE
Confidence 345677887755 25554433 45799988777665554 35899999999888765332 344556677787777
Q ss_pred ecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc---cCCCceEEEEEC
Q 007169 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIG 216 (615)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~---~~~~l~~ii~~~ 216 (615)
...+.... ...+++.++..++.....+..+.+... .++.++.+++-+
T Consensus 108 ~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG 157 (358)
T 4gs5_A 108 VTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGG 157 (358)
T ss_dssp EECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECS
T ss_pred ecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcc
Confidence 66654332 345778889999888777766654332 345566555533
No 56
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=71.17 E-value=33 Score=35.78 Aligned_cols=120 Identities=8% Similarity=-0.017 Sum_probs=82.3
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (615)
.++.+|++.. ..|..|. ...+|.+.+...+..+.. ..++.++|++..+++-+... +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3566776654 2555443 345788888766655443 45889999999988876433 34578889999988776
Q ss_pred CCC--CCHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEEC
Q 007169 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (615)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~ 216 (615)
... ..++.+...+++.++.+++.....+..+..... .++.++.++.-+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G 269 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCG 269 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEec
Confidence 543 467888999999999999998877766654321 245566665544
No 57
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=70.42 E-value=30 Score=36.40 Aligned_cols=122 Identities=15% Similarity=-0.020 Sum_probs=81.3
Q ss_pred cCCCceEEEEEeecCccCce--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH-HHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 168 (615)
.++.+|++.. ..|..|.. ..+|.+.+...+.... .....++.++|++..++|-....- ...++++..|+..+..
T Consensus 174 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 174 PERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp CTTSEEEEEE--ECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCCcEEEEE--CCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 3566776544 25554432 3578887754433211 112347889999988887653332 2457788889998887
Q ss_pred CCCCCHHHHHHHHHhccceEEEEcccchHHHHhhh----ccCCCceEEEEEC
Q 007169 169 YDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL----SEVPTVRLIVVIG 216 (615)
Q Consensus 169 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~----~~~~~l~~ii~~~ 216 (615)
.+...++.+...+++.++.+++.....+..+.+.. ..++.++.+++-+
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG 302 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG 302 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECS
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECC
Confidence 76678999999999999999999887776665432 2456777766644
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=69.75 E-value=22 Score=37.09 Aligned_cols=121 Identities=11% Similarity=0.011 Sum_probs=80.9
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (615)
.++.+|++.. ..|..|. ...+|.+.+...+..... ..++.++|++..++|-+... +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3566676654 2454443 345798888766554443 45899999999988876432 34578889999998877
Q ss_pred CCC--CCHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEECC
Q 007169 169 YDT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (615)
... ..++.+...+++.++.+++.....+..+..... .++.++.+++-++
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 653 467889999999999999998877666544321 3456776665443
No 59
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.65 E-value=26 Score=36.93 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=80.4
Q ss_pred CCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecCC
Q 007169 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLYD 170 (615)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 170 (615)
+.+|++.. ..|..|. ...+|.+.+...+......+...++.++|++..++|-...+ +...++++..|+.++.+.
T Consensus 190 ~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 55666554 2444332 34578888776655544443345788999998888876432 345567788999887764
Q ss_pred CCCHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEECC
Q 007169 171 TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIGG 217 (615)
Q Consensus 171 ~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~~ 217 (615)
...++.+...+++.++..+++....+..+.+... .++.++.+++-++
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 5788999999999999999998887776655321 3567777666443
No 60
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.17 E-value=32 Score=37.31 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=81.9
Q ss_pred cCCCceEEEEEeecCccCce--eEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGEY--KWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (615)
.++.++++.. ..|..|.. ..+|.+.+...+.... -...++.++|++...++-+...- ..+++++..|++.+.
T Consensus 254 ~~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 254 NAEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTF--KYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp ETTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHH--HHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHH--HHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3566776654 25554433 3467776654432211 12358899999888877664432 346789999999887
Q ss_pred cCCC---CCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 168 LYDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~~~---~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
.... ..++.+..++++.++.++++....+..+.+... ++++++.+++-++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGE 388 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESS
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecC
Confidence 6542 467889999999999999998887777665432 3567887777654
No 61
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.17 E-value=34 Score=36.31 Aligned_cols=120 Identities=3% Similarity=-0.184 Sum_probs=82.9
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (615)
.|+.+|++.. ..|..|. ...+|.+.+...+..+.. ..++.++|++..++|-...+- ..+++++..|+..+.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4677777665 2454443 345799988877666554 458999999999988875543 347888899998887
Q ss_pred cCCCC---CHHHHHHHHHhccceEEEEcccchHHHHhhh-------ccCCCceEEEEEC
Q 007169 168 LYDTL---GPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-------SEVPTVRLIVVIG 216 (615)
Q Consensus 168 l~~~~---~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-------~~~~~l~~ii~~~ 216 (615)
..+.. .++.+...+++.++.++.........+.+.. .+++.++.++.-+
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGA 298 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCC
Confidence 65432 5678888999999999888776665554431 1345667666543
No 62
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=65.96 E-value=12 Score=28.14 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=36.6
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~ 602 (615)
..++++.+.+.|.|.+|..+.-+ .++++-+.+++.+++.++..+
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~-~D~ll~v~~~d~~~l~~~i~~ 58 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGE-YDLIVKVETDTLKDLDQFITE 58 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSS-CSEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCeeEEEEEccc-CCEEEEEEECCHHHHHHHHHH
Confidence 37899999999999999876543 568888888999999999863
No 63
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=65.51 E-value=49 Score=34.80 Aligned_cols=118 Identities=13% Similarity=0.026 Sum_probs=81.9
Q ss_pred CCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecCC
Q 007169 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLYD 170 (615)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 170 (615)
+.+|++.. ..|..|. ...+|.+.+...+..++.. .++.++|++..++|-...+ +..++.++..|+..+.+.
T Consensus 180 ~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~- 253 (549)
T 3g7s_A 180 EDVALIPY--TGGTTGMPKGVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG- 253 (549)
T ss_dssp TSEEECCE--ECCCCC-CEEEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-
T ss_pred CCEEEEEE--CCCccCCCceEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-
Confidence 56666543 2454443 3457999888877766554 4789999998888765432 233667788898887665
Q ss_pred CCCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 171 TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 171 ~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
...++.+...+++.++.++++....+..+.+... .++.++.++.-+.
T Consensus 254 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~ 306 (549)
T 3g7s_A 254 MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306 (549)
T ss_dssp SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESS
T ss_pred CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCc
Confidence 6788999999999999999999887776655432 3456676665443
No 64
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=60.36 E-value=38 Score=35.75 Aligned_cols=122 Identities=10% Similarity=-0.049 Sum_probs=80.6
Q ss_pred CCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeE
Q 007169 94 DYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIY-----HGISKGSCIGLYFVNRPEW-LIVDHACSAYSFIS 165 (615)
Q Consensus 94 d~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~-----~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~ 165 (615)
+.+|++.. ..|..|. ...+|.+.+...+..++..+.. ..+...+++..+.+..... +..++.++..|+..
T Consensus 175 ~~~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLY--TSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEE--CCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 44455443 2555443 3357999998888887776652 3567778888777766543 33466788889888
Q ss_pred EecCCCCCHHHHHHHHHhccceEEEEcccchHHHHhhhccCCCceEEEEECC
Q 007169 166 VPLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLSEVPTVRLIVVIGG 217 (615)
Q Consensus 166 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~~~~~l~~ii~~~~ 217 (615)
+........+.+...+++.++..++.....+..+.....+++.++.+++-+.
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~ 304 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGE 304 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGGGSTTCCEEEEESS
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCccccCceEEEEEecC
Confidence 7654433356677889999999999888766655444445677887776554
No 65
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=60.26 E-value=14 Score=27.50 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007169 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~ 602 (615)
.++++.+.+.|.|.+|..+..+ .+.++-+.+++.+++.++..+
T Consensus 16 ~~~~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~~~~ 58 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVVYGV-YDIVVKVEADSMDKLKDFVTN 58 (83)
T ss_dssp HHHHHHHTTCTTEEEEEECSSS-CSEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEEEecc-CCEEEEEEECCHHHHHHHHHH
Confidence 6899999999999999876543 467777788899999998864
No 66
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=60.14 E-value=39 Score=36.70 Aligned_cols=122 Identities=11% Similarity=-0.065 Sum_probs=79.0
Q ss_pred cCCCceEEEEEeecCccCcee--EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGEYK--WMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (615)
.++.++++.. ..|..|..+ .+|.+.+...+.... -...++.++|++...++-+...- ..+++.+..|++.+.
T Consensus 260 ~~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~ 335 (663)
T 1ry2_A 260 DSEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLV 335 (663)
T ss_dssp ETTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEE
T ss_pred CCCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEE
Confidence 3566776654 255544433 356666543332211 12468899999887776654322 345788999998887
Q ss_pred cCCC---CCHHHHHHHHHhccceEEEEcccchHHHHhhhc------cCCCceEEEEECC
Q 007169 168 LYDT---LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS------EVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~~~---~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~------~~~~l~~ii~~~~ 217 (615)
.... ..++.+..++++.++.++++....+..+.+... +++.++.+++-++
T Consensus 336 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 336 FEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp ECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred ECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 6542 367889999999999999998887776655432 3456776666544
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=59.95 E-value=38 Score=36.04 Aligned_cols=121 Identities=11% Similarity=-0.104 Sum_probs=78.5
Q ss_pred cCCCceEEEEEeecCccCceeE--eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGEYKW--MTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~~~~--~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vp 167 (615)
.++.+|++.. ..|..|..+- +|...+...+ .......++.+++++...++...... ..+++.+..|+.++.
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYF--SSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEE--eCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 4566777654 2565554443 4554333222 12222357889998887777654433 346788999998887
Q ss_pred cC-CCCCHHHHHHHHHhccceEEEEcccchHHHHhhhc---cCCCceEEEEECC
Q 007169 168 LY-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS---EVPTVRLIVVIGG 217 (615)
Q Consensus 168 l~-~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~---~~~~l~~ii~~~~ 217 (615)
.+ ....++.+...+++.++..+++....+..+.+... .++.++.+++-++
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSS
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccC
Confidence 75 56789999999999999999998877766655321 2456776666443
No 68
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=58.81 E-value=64 Score=34.62 Aligned_cols=120 Identities=11% Similarity=-0.000 Sum_probs=83.1
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 168 (615)
.|+.+|++.. ..|..|. ...+|.+.+...+. .....++.++|++..+++-+.+. +..+++++..|+.++..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4677777655 2555443 33578877754332 22345889999999998876543 34467888999987765
Q ss_pred C-CCCCHHHHHHHHHhccceEEEEcccchHHHHhhh-ccCCCceEEEEECC
Q 007169 169 Y-DTLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~-~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~ 217 (615)
+ ....++.+...+++.++..++.....+..+.+.. ..++.++.+++-++
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe 286 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGD 286 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeC
Confidence 3 3568899999999999999999887777665432 24567887777654
No 69
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=56.50 E-value=50 Score=34.63 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=70.9
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~- 329 (615)
.|+.++++.. .+| -.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+...
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 4677776542 222 358999887766554433 678999999999887532 2334567788999888766
Q ss_pred -CChHHHHHHHHhhCCeEEeechHHHHHHHH
Q 007169 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (615)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (615)
.....+...++..++.+++..+.....+.+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 578889999999999999998877666544
No 70
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=55.28 E-value=48 Score=35.12 Aligned_cols=120 Identities=11% Similarity=-0.032 Sum_probs=82.3
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-hHHHHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRP-EWLIVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 168 (615)
.|+.+|++.. ..|..|. ...+|.+.+...... ....++.++|++..+++-+. -....+++++..|+.++..
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4677777654 2444332 235788877433221 22347889999998888753 3445677888999988776
Q ss_pred CC-CCCHHHHHHHHHhccceEEEEcccchHHHHhhh-ccCCCceEEEEECC
Q 007169 169 YD-TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-SEVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~~-~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-~~~~~l~~ii~~~~ 217 (615)
.. ...++.+...+++.++..++.....+..+.+.. ..++.++.++.-++
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~ 336 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGE 336 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESS
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecc
Confidence 54 467889999999999999999888777766543 24567887776554
No 71
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=51.37 E-value=1.1e+02 Score=31.61 Aligned_cols=103 Identities=9% Similarity=-0.041 Sum_probs=72.8
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEe
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVP 167 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vp 167 (615)
.++.+|++.. ..|..|. ...+|.+.+...+..+...+ ++.++|++...++-... ++..+++++..|+.++.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4567777655 2555443 34579998888777666544 78899998887776433 33457888999998876
Q ss_pred cCCCCCHHHHHHHHHhccceEEEEcccchHHHHh
Q 007169 168 LYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (615)
Q Consensus 168 l~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~ 201 (615)
. +...++.+...+ +.++..++.....+..+.+
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 456777777777 6789999888777666654
No 72
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=46.34 E-value=1.5e+02 Score=30.08 Aligned_cols=104 Identities=10% Similarity=0.028 Sum_probs=70.2
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhccC---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEecC
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQG 330 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~~ 330 (615)
.|+.+|++.........-....+|.+.+...+..+... .+. ++|++..+++-...+ ....+.++..|+..+....
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEeeCC
Confidence 46778876654221111134679999987766554433 454 899999888865322 3345677889998887642
Q ss_pred -----ChHHHHHHHHhhCCeEEeechHHHHHHHH
Q 007169 331 -----DNMKLMDDMAALRPTVFCSVPRLYNRIYA 359 (615)
Q Consensus 331 -----~~~~l~~~i~~~~~t~~~~~P~~~~~l~~ 359 (615)
....+...++..++.+++..+.....+.+
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 46778888999999999998877665543
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=45.71 E-value=80 Score=33.20 Aligned_cols=120 Identities=8% Similarity=-0.092 Sum_probs=79.1
Q ss_pred CCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHh--HHHHHHHHHhcCCeEEec
Q 007169 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPE--WLIVDHACSAYSFISVPL 168 (615)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e--~~~~~lA~~~~G~v~vpl 168 (615)
|+.+|++.. ..|..|. ...+|.+.+...+..+... ..++.++|++..++|-... +...+++.+..|+.++.+
T Consensus 175 ~~d~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 175 PNDIAYLQY--TSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp TTSEEEEEC--TTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCeEEEEe--CCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 577777654 2444333 3457998887665544321 2588999999988887654 344567788888887766
Q ss_pred CC---CCCHHHHHHHHHhccceEEEEcccchHHHHhhh-------ccCCCceEEEEEC
Q 007169 169 YD---TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCL-------SEVPTVRLIVVIG 216 (615)
Q Consensus 169 ~~---~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~-------~~~~~l~~ii~~~ 216 (615)
.+ ...++.+...+++.++.++++.......+.... .+++.++.++.-+
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 308 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGA 308 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECS
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccC
Confidence 54 235678889999999999998876655443322 1345667666543
No 74
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=43.78 E-value=33 Score=26.12 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=35.7
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHH
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAA 601 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~ 601 (615)
..++++.+.++|.|.+|..+.-+ .+.++-+.+++.+++.++..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~-~D~ll~v~~~d~~~l~~~l~ 57 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGP-YDLVALVRLKDVEELDDVVT 57 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSS-SSEEEEEEESSGGGHHHHCC
T ss_pred HHHHHHHHhcCCCeEEEEEeecC-CCEEEEEEECCHHHHHHHHH
Confidence 47889999999999999876543 56788888899999999874
No 75
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=42.45 E-value=1.4e+02 Score=31.34 Aligned_cols=92 Identities=10% Similarity=0.036 Sum_probs=65.7
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc---CcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~- 329 (615)
.|+.+|++. . +-.+|.+.+...+..+.. ..++.++|++..++|-.-. .....+.++..|+..+...
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCC
Confidence 356677653 1 236899988766655443 3578899999998886532 2234566788899888766
Q ss_pred -CChHHHHHHHHhhCCeEEeechHHHH
Q 007169 330 -GDNMKLMDDMAALRPTVFCSVPRLYN 355 (615)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~ 355 (615)
.....+...++..++.+++..+....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 57788888999999999998876543
No 76
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=41.48 E-value=45 Score=34.82 Aligned_cols=105 Identities=12% Similarity=-0.071 Sum_probs=69.6
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHH-HHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH--HHHHHHHhcCCeEE
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEA-GTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL--IVDHACSAYSFISV 166 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el-~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~v 166 (615)
.|+.+|++.. ..|..|. ...+|.+.+ ....... ....++.++|++..+++-...+- ..++..+..|+..+
T Consensus 181 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 255 (529)
T 2v7b_A 181 GCDDIAFWLY--SSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAI 255 (529)
T ss_dssp CTTSEEEEEE--C-----CCCEEEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEE
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEE
Confidence 3567777654 2444332 345788877 3222111 11247889999988888765543 34567888999988
Q ss_pred ecCCCCCHHHHHHHHHhccceEEEEcccchHHHHh
Q 007169 167 PLYDTLGPDAVKYIVNHASVQAVFCVPQTLNSLLS 201 (615)
Q Consensus 167 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~ 201 (615)
.+.+...++.+...+++.++.+++.....+..+..
T Consensus 256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 256 LMAERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp CCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 87777789999999999999999988776665543
No 77
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=38.85 E-value=2.1e+02 Score=29.53 Aligned_cols=121 Identities=10% Similarity=-0.038 Sum_probs=77.1
Q ss_pred CCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhH-HHHHHHHHhcCCeEEecC
Q 007169 93 RDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEW-LIVDHACSAYSFISVPLY 169 (615)
Q Consensus 93 pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~ 169 (615)
++.+|++.. ..|..|. ...+|.+.+...+..+... ...++.+++++..+.+-+... +..+++++..|+..+.+.
T Consensus 144 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIF--TSGTTGQPKGVQISHDNLLSFTNWMIED-AAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEE--CCC---CCCEEEEEHHHHHHHHHHHHHC-TTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEE--cCCCCCCCCEEEEehHHHHHHHHHHhhc-cccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 466666654 2444332 3457998887655433321 124678888888777765433 445677888999887765
Q ss_pred CC--CCHHHHHHHHHhccceEEEEcccchHHHHhhhc----cCCCceEEEEEC
Q 007169 170 DT--LGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS----EVPTVRLIVVIG 216 (615)
Q Consensus 170 ~~--~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~----~~~~l~~ii~~~ 216 (615)
.. ...+.+...+.+.++.+++........+..... .++.++.+++-+
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDG 273 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECS
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEec
Confidence 43 367888999999999999988876665543321 345666666543
No 78
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=38.76 E-value=38 Score=28.20 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=36.4
Q ss_pred CeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC
Q 007169 552 QGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ 606 (615)
Q Consensus 552 ~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~ 606 (615)
..+.+.+++++..+...|.+ |++++|-..+... +. .+++++++++|+.
T Consensus 49 ~~~~l~~e~l~~l~~~~p~p-evliiGTG~~~~~-----l~-p~l~~~l~~~GI~ 96 (135)
T 2fvt_A 49 KPEQIDRYSLQRVFDNANAI-DTLIVGTGADVWI-----AP-RQLREALRGVNVV 96 (135)
T ss_dssp STTCCCTTTTHHHHHTTTSC-SEEEEECTTSCCC-----CC-HHHHHHHHTTTCE
T ss_pred CcccCCHHHHHHHHhcCCCC-CEEEEcCCCCCCc-----CC-HHHHHHHHHcCCE
Confidence 46778899999999888765 8899998755432 23 5778888899886
No 79
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=37.98 E-value=66 Score=27.03 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=36.2
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~ 602 (615)
..++++.+.++|.|.+|+.+..+ -+.++-+.+.+.+++.++..+
T Consensus 82 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~ 125 (152)
T 2cg4_A 82 YPSALAKLESLDEVTEAYYTTGH-YSIFIKVMCRSIDALQHVLIN 125 (152)
T ss_dssp HHHHHHHHHTCTTEEEEEEESSS-CSEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcCeEEEEEEecc-cCEEEEEEECCHHHHHHHHHH
Confidence 46889999999999999887433 467888888999999999864
No 80
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=37.07 E-value=1.4e+02 Score=30.85 Aligned_cols=82 Identities=13% Similarity=-0.015 Sum_probs=61.3
Q ss_pred EecHHHHHHHHHhhccC---cccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEee
Q 007169 275 VLSHGNLIASVAGATLG---TKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (615)
Q Consensus 275 ~~th~~l~~~~~~~~~~---~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~ 349 (615)
.+|.+.+...+..+... .++.++|++..++|-... .....+.++..|+..+... .....+...++..++.+++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 58999887766554433 578899999999886632 2334566788898888776 57788889999999999998
Q ss_pred chHHHHHH
Q 007169 350 VPRLYNRI 357 (615)
Q Consensus 350 ~P~~~~~l 357 (615)
.+.....+
T Consensus 107 ~~~~~~~~ 114 (503)
T 4fuq_A 107 DPSKRDGI 114 (503)
T ss_dssp CGGGTTTT
T ss_pred CchhhHHH
Confidence 87655433
No 81
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=36.30 E-value=1.3e+02 Score=29.29 Aligned_cols=66 Identities=6% Similarity=-0.008 Sum_probs=46.9
Q ss_pred HHHHcC-CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc
Q 007169 129 GLIYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (615)
Q Consensus 129 ~L~~~G-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (615)
.+.+.| +++|+.|.+....+---..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344556 488988645555566667777888888987765555544555667788999999999764
No 82
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=35.91 E-value=3e+02 Score=26.35 Aligned_cols=78 Identities=9% Similarity=0.086 Sum_probs=45.0
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC----CCCHHHHHHHHHhccceEEEEccc--------chHHHHhh
Q 007169 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD----TLGPDAVKYIVNHASVQAVFCVPQ--------TLNSLLSC 202 (615)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~----~~~~~~l~~il~~~~~~~vi~~~~--------~~~~l~~~ 202 (615)
+++||.|.+..+.-..+. .++...|+.++.++. ....+++...++. +.++++.... ..+.+.++
T Consensus 105 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 105 LDTTTNTVMATPTFVQYR---QNALIEGAEVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp CSTTCEEEEEESSCHHHH---HHHHHHTCEEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ccCCCEEEEcCCChHHHH---HHHHHcCCEEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 578999998887665543 345556776554432 2356777777753 5666665321 23455555
Q ss_pred hccCCCceEEEEECC
Q 007169 203 LSEVPTVRLIVVIGG 217 (615)
Q Consensus 203 ~~~~~~l~~ii~~~~ 217 (615)
...+.. ..++++|+
T Consensus 181 ~~~~~~-~~~li~De 194 (363)
T 3ffh_A 181 LDRVPS-DVLVVLDE 194 (363)
T ss_dssp HTTSCT-TSEEEEEC
T ss_pred HHhCCC-CcEEEEeC
Confidence 554443 44555554
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=34.37 E-value=2.1e+02 Score=24.23 Aligned_cols=88 Identities=8% Similarity=-0.038 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hccceEEEEcccchHH
Q 007169 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNS 198 (615)
Q Consensus 122 ~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~ 198 (615)
....+...|... ++..+.|+++.....-.+.-.+...|..+..++..++.++-..+++ ..+.+++++......-
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 97 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARG 97 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcC
Confidence 444454444433 4568999988766555555555667888889999998877665554 4567888887543222
Q ss_pred HHhhhccCCCceEEEEECC
Q 007169 199 LLSCLSEVPTVRLIVVIGG 217 (615)
Q Consensus 199 l~~~~~~~~~l~~ii~~~~ 217 (615)
+ ++|.+..+|.++.
T Consensus 98 i-----d~~~~~~Vi~~d~ 111 (175)
T 2rb4_A 98 I-----DVKQVTIVVNFDL 111 (175)
T ss_dssp T-----CCTTEEEEEESSC
T ss_pred C-----CcccCCEEEEeCC
Confidence 2 5677788877664
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=33.84 E-value=1.3e+02 Score=26.13 Aligned_cols=89 Identities=8% Similarity=0.029 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHH---HHHHhccceEEEEcccchHH
Q 007169 122 ARTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVK---YIVNHASVQAVFCVPQTLNS 198 (615)
Q Consensus 122 ~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~---~il~~~~~~~vi~~~~~~~~ 198 (615)
....+...|.+.+ ++..+.|+++.....-.+.-.+...|..+..++..++.++.. ..++..+.+++++......-
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 3344555555543 566888888876554444445556788888888877665433 34455677888877543222
Q ss_pred HHhhhccCCCceEEEEECC
Q 007169 199 LLSCLSEVPTVRLIVVIGG 217 (615)
Q Consensus 199 l~~~~~~~~~l~~ii~~~~ 217 (615)
+ ++|.+..+|.++.
T Consensus 110 l-----di~~~~~VI~~d~ 123 (185)
T 2jgn_A 110 L-----DISNVKHVINFDL 123 (185)
T ss_dssp ------CCCSBSEEEESSC
T ss_pred C-----CcccCCEEEEeCC
Confidence 2 5677777777654
No 85
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=33.28 E-value=98 Score=35.27 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=69.3
Q ss_pred CCCCeEEEEeccCCCCCCcEEEecHHHHHHHHHhhcc---CcccCCCcEEEEcCChHHHHHHHHHHHHHHhCcEEEEec-
Q 007169 254 KPDDVATICYTSGTTGTPKGAVLSHGNLIASVAGATL---GTKFYPSDVYISYLPLAHIYERANQVMTVYSGVAVGFYQ- 329 (615)
Q Consensus 254 ~~~~~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~lPl~h~~~~~~~~~~l~~G~~i~~~~- 329 (615)
.|+.+|++.. .+| -.+|.+.+...+..+.. ..++.++|++..++|-... .....+.++..|+..+...
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e-~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPE-FVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHH-HHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHH-HHHHHHHHHHcCCEEEeeCC
Confidence 4677886642 222 45899888766655443 3678899999999887632 2334567888999888776
Q ss_pred -CChHHHHHHHHhhCCeEEeechHHHHHH
Q 007169 330 -GDNMKLMDDMAALRPTVFCSVPRLYNRI 357 (615)
Q Consensus 330 -~~~~~l~~~i~~~~~t~~~~~P~~~~~l 357 (615)
..+..+...++..++.+++..+.....+
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 5788899999999999999887665444
No 86
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.88 E-value=73 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~ 602 (615)
.+++.+.+.++|.|.+|+.+... -++++-+.+++.+++.++..+
T Consensus 79 ~~~~~~~l~~~peV~~~~~vtG~-~D~~l~v~~~d~~~l~~~l~~ 122 (162)
T 3i4p_A 79 LKRFSEVVSEFPEVVEFYRMSGD-VDYLLRVVVPDIAAYDAFYKR 122 (162)
T ss_dssp HHHHHHHHHHCTTEEEEEECCSS-CSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeeecCCC-CCEEEEEEECCHHHHHHHHHH
Confidence 46788899999999999875432 467777778899988888654
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=32.76 E-value=1.1e+02 Score=30.16 Aligned_cols=61 Identities=10% Similarity=-0.074 Sum_probs=41.2
Q ss_pred HHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC-----CCCHHHHHHHHHhcc--ceEEEEc
Q 007169 129 GLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD-----TLGPDAVKYIVNHAS--VQAVFCV 192 (615)
Q Consensus 129 ~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~-----~~~~~~l~~il~~~~--~~~vi~~ 192 (615)
.|...++++||.|.+-.+....+ ..++...|+.++.++. ....+.+...+..-+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 34555789999998887766554 3456778987765542 247888888774434 6777644
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=32.55 E-value=1.2e+02 Score=29.49 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCH------hHHH-HHHHHHhcCCeEEecCCCC------------CHHHHHHHHHhccceEEEEcc
Q 007169 134 GISKGSCIGLYFVNRP------EWLI-VDHACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (615)
Q Consensus 134 Gv~~gd~V~i~~~n~~------e~~~-~~lA~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (615)
-+++||+|+|++|.+. +-+- +.--+-..|.-++.-.... ..+++..++.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999853 2221 2222345687766432211 134566777777888888864
No 89
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=32.22 E-value=94 Score=26.37 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=36.1
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHc
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASE 603 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~ 603 (615)
.+++++.+.++|.|.+|+.+..+ .++++-+.+.+.+++.++..++
T Consensus 85 ~~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~d~~~l~~~l~~~ 129 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALTGE-TDYLLQAFFTDMNAFSHFVLDT 129 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEESSS-CSEEEEEEESSHHHHHHHHHHT
T ss_pred HHHHHHHHhcChhhhEeeeecCC-CCEEEEEEECCHHHHHHHHHHH
Confidence 56788999999999999876433 4677788888999999998643
No 90
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=31.82 E-value=91 Score=26.03 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=33.5
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCCCeEEEEEE-eCHHHHHHHHH
Q 007169 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVS-VDQDALKAWAA 601 (615)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv-~~~~~l~~~~~ 601 (615)
+++++.+.++|.|.+|+.+..+ .+.++-+.+ ++.+++.++..
T Consensus 83 ~~~~~~l~~~peV~~~~~vtG~-~d~~~~v~~~~d~~~l~~~~~ 125 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGVGR-YNIIVRLLLPKDIKDAENLIS 125 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEESS-CSEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeEecCC-CCEEEEEEEcCCHHHHHHHHH
Confidence 5788999999999999876443 457777777 88899988873
No 91
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=31.55 E-value=1.6e+02 Score=27.62 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCceEEEEEeecCccCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH
Q 007169 84 NFVRAVDTFRDYKYLGTRVRVDGTVGEYKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL 152 (615)
Q Consensus 84 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~ 152 (615)
++++..+..|+...+.+. |....+|-..|..++.+++.+.+..|.+.|++ ..++.-|+.-.+
T Consensus 20 v~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 456667789999888776 66666777789999999999999999998764 555555666543
No 92
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=31.12 E-value=1.2e+02 Score=35.91 Aligned_cols=120 Identities=13% Similarity=-0.009 Sum_probs=81.1
Q ss_pred cCCCceEEEEEeecCccCc--eeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHhHH-HHHHHHHhcCCeEEec
Q 007169 92 FRDYKYLGTRVRVDGTVGE--YKWMTYGEAGTARTEVGSGLIYHGISKGSCIGLYFVNRPEWL-IVDHACSAYSFISVPL 168 (615)
Q Consensus 92 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 168 (615)
.|+.+|++.. ..|..|. ...+|.+.+... .......++.++|++..+.+-+.+.. .-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4677777655 2554443 335788877532 12223347889999988888765543 4467888899988876
Q ss_pred CC--CCCHHHHHHHHHhccceEEEEcccchHHHHhhhc-cCCCceEEEEECC
Q 007169 169 YD--TLGPDAVKYIVNHASVQAVFCVPQTLNSLLSCLS-EVPTVRLIVVIGG 217 (615)
Q Consensus 169 ~~--~~~~~~l~~il~~~~~~~vi~~~~~~~~l~~~~~-~~~~l~~ii~~~~ 217 (615)
++ ...++.+...+++.++.+++.....+..+.+... .++.++.+++-++
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe 730 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGE 730 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESS
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecC
Confidence 65 3578899999999999999988877766654321 2355777776554
No 93
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.06 E-value=1.4e+02 Score=26.91 Aligned_cols=53 Identities=9% Similarity=-0.128 Sum_probs=36.9
Q ss_pred CcEEEEcCCh-HHHHHHHHH-HHHHHhCcEEEEec--CChHHHHHHHHhhCCeEEee
Q 007169 297 SDVYISYLPL-AHIYERANQ-VMTVYSGVAVGFYQ--GDNMKLMDDMAALRPTVFCS 349 (615)
Q Consensus 297 ~d~~l~~lPl-~h~~~~~~~-~~~l~~G~~i~~~~--~~~~~l~~~i~~~~~t~~~~ 349 (615)
+.+++...+- .|..|.... ...-..|..++... -.+..+.+.+++++|+++..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3444444443 488887654 44556788887765 57899999999999997666
No 94
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=30.25 E-value=2.2e+02 Score=23.79 Aligned_cols=86 Identities=3% Similarity=0.011 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hccceEEEEcccchHHHH
Q 007169 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNSLL 200 (615)
Q Consensus 124 ~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~l~ 200 (615)
..+...|.+. ++.++.|+++.....-.+.-.+...|..+..++..++.++-..+++ ..+.+++++......
T Consensus 24 ~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~--- 97 (163)
T 2hjv_A 24 SLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAAR--- 97 (163)
T ss_dssp HHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTT---
T ss_pred HHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhc---
Confidence 3444444443 3457888887765554444555667888889999988776665554 456778887743222
Q ss_pred hhhccCCCceEEEEECC
Q 007169 201 SCLSEVPTVRLIVVIGG 217 (615)
Q Consensus 201 ~~~~~~~~l~~ii~~~~ 217 (615)
.-++|.+..+|.++.
T Consensus 98 --Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 98 --GIDIENISLVINYDL 112 (163)
T ss_dssp --TCCCSCCSEEEESSC
T ss_pred --CCchhcCCEEEEeCC
Confidence 225677788877664
No 95
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=30.24 E-value=2e+02 Score=24.53 Aligned_cols=87 Identities=3% Similarity=-0.030 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHH---hccceEEEEcccchHHH
Q 007169 123 RTEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVN---HASVQAVFCVPQTLNSL 199 (615)
Q Consensus 123 ~~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~---~~~~~~vi~~~~~~~~l 199 (615)
...+...|.+. ++..+.|+++.....-.+.-.+...|..+..++..++.++-..+++ ..+.+++++......-+
T Consensus 19 ~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 19 NRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp HHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 34444445543 3457888887765555454555567888889999998876655554 45678888875432211
Q ss_pred HhhhccCCCceEEEEECC
Q 007169 200 LSCLSEVPTVRLIVVIGG 217 (615)
Q Consensus 200 ~~~~~~~~~l~~ii~~~~ 217 (615)
++|.+..+|.++.
T Consensus 96 -----di~~~~~Vi~~d~ 108 (172)
T 1t5i_A 96 -----DIERVNIAFNYDM 108 (172)
T ss_dssp -----CGGGCSEEEESSC
T ss_pred -----chhhCCEEEEECC
Confidence 4456677776554
No 96
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=29.64 E-value=1.2e+02 Score=25.14 Aligned_cols=44 Identities=9% Similarity=0.210 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHH
Q 007169 558 AEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAAS 602 (615)
Q Consensus 558 p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~ 602 (615)
.+++++.+.++|.|.+|+.+..+ .+.++-+.+.+.+++.++..+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~~~~~l~~~~~~ 121 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGA-ACYMLKINAESLEAVEDFINK 121 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESS-SSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHhcChhhheeeeeeCC-CCEEEEEEECCHHHHHHHHHH
Confidence 46788889999999999865433 467777778899999888754
No 97
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=29.53 E-value=2.5e+02 Score=23.50 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHH---HhccceEEEEcccchHHHH
Q 007169 124 TEVGSGLIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIV---NHASVQAVFCVPQTLNSLL 200 (615)
Q Consensus 124 ~~la~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il---~~~~~~~vi~~~~~~~~l~ 200 (615)
..+...|.+. ++.++.|++++....-.+.-.+...|..+..++..++.++...++ +..+.+++++......
T Consensus 19 ~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~--- 92 (165)
T 1fuk_A 19 ECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR--- 92 (165)
T ss_dssp HHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT---
T ss_pred HHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc---
Confidence 3344444443 345788888776555444445556788888999998877665555 4456778887643222
Q ss_pred hhhccCCCceEEEEECC
Q 007169 201 SCLSEVPTVRLIVVIGG 217 (615)
Q Consensus 201 ~~~~~~~~l~~ii~~~~ 217 (615)
.-++|.+..+|.++.
T Consensus 93 --G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 93 --GIDVQQVSLVINYDL 107 (165)
T ss_dssp --TCCCCSCSEEEESSC
T ss_pred --CCCcccCCEEEEeCC
Confidence 225677788877664
No 98
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=28.17 E-value=1.9e+02 Score=28.26 Aligned_cols=53 Identities=8% Similarity=0.050 Sum_probs=33.9
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCC----------CCCHHHHHHHHHhccceEEEE
Q 007169 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYD----------TLGPDAVKYIVNHASVQAVFC 191 (615)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~----------~~~~~~l~~il~~~~~~~vi~ 191 (615)
+++||.|.+..++-..+. .++...|+.+++++. ....+.+...++. +.+++++
T Consensus 123 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 185 (407)
T 3nra_A 123 VARGDKVAIVQPDYFANR---KLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLF 185 (407)
T ss_dssp CCTTCEEEEEESCCTHHH---HHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEE
T ss_pred CCCCCEEEEcCCcccchH---HHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEE
Confidence 568898888777665443 455667776554432 1357788888876 5665544
No 99
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=28.07 E-value=81 Score=30.85 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=36.4
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHH-HHHhcCCeEEecCCCC------------CHHHHHHHHHhccceEEEEcc
Q 007169 134 GISKGSCIGLYFVNRPE------WLIVDH-ACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (615)
Q Consensus 134 Gv~~gd~V~i~~~n~~e------~~~~~l-A~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (615)
-+++||+|+|++|.+.- -+-.-. -+-..|.-++.-.... ..+++..++.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999832 222222 2334788776432111 123566667777778888754
No 100
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=26.24 E-value=95 Score=25.46 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=34.5
Q ss_pred eeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC
Q 007169 554 EYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ 606 (615)
Q Consensus 554 ~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~ 606 (615)
+.+.+++++..+...|.+ |++++|-..+. ..+. .+++++++++|+.
T Consensus 52 ~~l~~~~l~~l~~~~p~p-evliiGtG~~~-----~~l~-p~~~~~l~~~GI~ 97 (128)
T 2fi9_A 52 PVPTQEDISRVLEESDQI-EVLLIGTGVEL-----LRLP-EELRVLLWEKRIS 97 (128)
T ss_dssp SSCCTGGGHHHHHTGGGC-SEEEEECTTSC-----CCCC-HHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHhcCCCC-CEEEECCCCCC-----CCCC-HHHHHHHHHcCCE
Confidence 678899999999877654 78999987441 1233 4678888999986
No 101
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=25.38 E-value=1.8e+02 Score=28.76 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=36.6
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHH-HHHhcCCeEEecCCCC------------CHHHHHHHHHhccceEEEEcc
Q 007169 134 GISKGSCIGLYFVNRPE------WLIVDH-ACSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (615)
Q Consensus 134 Gv~~gd~V~i~~~n~~e------~~~~~l-A~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (615)
-+++||+|+|++|.+.- -+-.-. -+-..|..++.-.... ..+++..++.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 58899999999998742 222222 2334788776432211 123556666777778888754
No 102
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=24.39 E-value=1.9e+02 Score=28.06 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=37.0
Q ss_pred CCCCCCEEEEEcCCCHh------HHHHHHH-HHhcCCeEEecCCCC------------CHHHHHHHHHhccceEEEEcc
Q 007169 134 GISKGSCIGLYFVNRPE------WLIVDHA-CSAYSFISVPLYDTL------------GPDAVKYIVNHASVQAVFCVP 193 (615)
Q Consensus 134 Gv~~gd~V~i~~~n~~e------~~~~~lA-~~~~G~v~vpl~~~~------------~~~~l~~il~~~~~~~vi~~~ 193 (615)
-+++||+|+|++|.+.- -+-.-.. +-..|..++.-...+ ..+++..++.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998742 2222222 334788776432211 134566677777888888864
No 103
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.10 E-value=1.1e+02 Score=25.66 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007169 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (615)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~ 600 (615)
+++.+.+.++|.|.+|+.+..+ -+.++-+.+++.+++.++.
T Consensus 81 ~~~~~~l~~~p~V~~~~~~tG~-~d~~~~v~~~d~~~l~~~~ 121 (151)
T 2cyy_A 81 SEVASNLAKYPEIVEVYETTGD-YDMVVKIRTKNSEELNNFL 121 (151)
T ss_dssp HHHHHHHHTCTTEEEEEECSSS-SSEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCeeEeeEecCC-CCEEEEEEECCHHHHHHHH
Confidence 6789999999999999876432 4577777788999988887
No 104
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=23.65 E-value=1.1e+02 Score=26.53 Aligned_cols=41 Identities=12% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHH
Q 007169 559 EKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWA 600 (615)
Q Consensus 559 ~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~ 600 (615)
+++++.+.++|.|.+|+.+..+ -+.++-+.+++.+++.++.
T Consensus 101 ~~v~~~l~~~peV~~~~~vtG~-~d~l~~v~~~d~~~l~~~l 141 (171)
T 2e1c_A 101 SEVASNLAKYPEIVEVYETTGD-YDMVVKIRTKNSEELNNFL 141 (171)
T ss_dssp HHHHHHHHTSTTEEEEEECSSS-SSEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEeeCC-CCEEEEEEECCHHHHHHHH
Confidence 6889999999999999876432 4577777788988888877
No 105
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=23.37 E-value=1.4e+02 Score=24.56 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCeeeechHHHHHHHhcCCCcceEEEEeeCCCCeEEEEEEeCHHHHHHHHHHcCCC
Q 007169 551 AQGEYIAAEKIENVYAKCKFVGQCFVYGDSFNSALVAIVSVDQDALKAWAASEGIQ 606 (615)
Q Consensus 551 ~~G~~v~p~~IE~~l~~~p~V~~~~V~g~~~~~~~va~vv~~~~~l~~~~~~~~~~ 606 (615)
..++.+.+++++.++..- -|++++|-..+.. .+. .+++++++++|+.
T Consensus 47 ~~~~~l~~e~l~~ll~~~---pevliiGTG~~~~-----~l~-p~~~~~l~~~GI~ 93 (132)
T 2gm2_A 47 PSLGQLQPAHMDAVLALN---PAVILLGTGERQQ-----FPS-TDVLAACLTRGIG 93 (132)
T ss_dssp SSGGGCCTTTSHHHHHHC---CSEEEEECTTSCC-----CCC-HHHHHHHHHHTCE
T ss_pred CCcccCCHHHHHHHHhcC---CCEEEECCCCCCC-----cCC-HHHHHHHHHcCCE
Confidence 357788999999888754 4789999875533 223 4578888888886
No 106
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=23.28 E-value=2.2e+02 Score=27.73 Aligned_cols=65 Identities=6% Similarity=-0.019 Sum_probs=48.1
Q ss_pred HHHcC-CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCCCCHHHHHHHHHhccceEEEEccc
Q 007169 130 LIYHG-ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDTLGPDAVKYIVNHASVQAVFCVPQ 194 (615)
Q Consensus 130 L~~~G-v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~vi~~~~ 194 (615)
+.+.| +++|.+..+....+---..+-++|.++|.-++.+-|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444 678876666777777777888899999987766655555566677889999999999754
No 107
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=22.79 E-value=5e+02 Score=24.71 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEec--CC--CCCHHHHHHHHHhccceEEEEc
Q 007169 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPL--YD--TLGPDAVKYIVNHASVQAVFCV 192 (615)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl--~~--~~~~~~l~~il~~~~~~~vi~~ 192 (615)
+++||.|.+..+.-..+.. ++...|+.++.+ ++ ....+++...++..+.++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 5789999888776655433 355678766544 43 3578899998887677777764
No 108
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.95 E-value=3.8e+02 Score=25.54 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecC--C----CCCHHHHHHHHHh----ccceEEEEc
Q 007169 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY--D----TLGPDAVKYIVNH----ASVQAVFCV 192 (615)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~--~----~~~~~~l~~il~~----~~~~~vi~~ 192 (615)
+++||.|.+..+....+... +...|+.++.++ . ....+++...+++ -+++++++.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46899998887766555444 667788776665 2 2367888888874 355666554
No 109
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=21.66 E-value=2.7e+02 Score=27.26 Aligned_cols=72 Identities=8% Similarity=0.041 Sum_probs=44.9
Q ss_pred HHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCC----CCHHHHHHHHHhc--cceEEEEcc-----cchHHH
Q 007169 131 IYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT----LGPDAVKYIVNHA--SVQAVFCVP-----QTLNSL 199 (615)
Q Consensus 131 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~----~~~~~l~~il~~~--~~~~vi~~~-----~~~~~l 199 (615)
...++++||.|.+..+....+.. ++...|+.++.++.. ...+.+...++.. +.++|++.. ...+.+
T Consensus 65 ~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i 141 (394)
T 1o69_A 65 RVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEI 141 (394)
T ss_dssp HHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHH
T ss_pred HHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEECCCCChhhHHHH
Confidence 33457899999998887766543 445578776655432 4678888888753 466666543 233445
Q ss_pred Hhhhcc
Q 007169 200 LSCLSE 205 (615)
Q Consensus 200 ~~~~~~ 205 (615)
.++..+
T Consensus 142 ~~l~~~ 147 (394)
T 1o69_A 142 VEICKE 147 (394)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 110
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=21.41 E-value=2.5e+02 Score=27.14 Aligned_cols=55 Identities=9% Similarity=-0.100 Sum_probs=37.2
Q ss_pred CCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecCCC-------CCHHHHHHHHHhccceEEEEc
Q 007169 135 ISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLYDT-------LGPDAVKYIVNHASVQAVFCV 192 (615)
Q Consensus 135 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~-------~~~~~l~~il~~~~~~~vi~~ 192 (615)
+++||.|.+..+.-..+ ..++...|+.++.++.. ...+.+...+++.++++|++.
T Consensus 106 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMF---YSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHH---HHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHH---HHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 46888888766655543 34556778877666542 678888888876677776553
No 111
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.65 E-value=3e+02 Score=27.63 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=12.1
Q ss_pred HHHhccceEEEEcccchHHHHhh
Q 007169 180 IVNHASVQAVFCVPQTLNSLLSC 202 (615)
Q Consensus 180 il~~~~~~~vi~~~~~~~~l~~~ 202 (615)
.+...++++++++....+.+.+.
T Consensus 141 ~~~~~G~~~~~v~~~d~~~l~~a 163 (430)
T 3ri6_A 141 TLPSFGIEVRFVDVMDSLAVEHA 163 (430)
T ss_dssp HHHHTTCEEEEECTTCHHHHHHH
T ss_pred HHHHcCCEEEEeCCCCHHHHHHh
Confidence 44555666666655444444443
No 112
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=20.16 E-value=2.2e+02 Score=27.71 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHcCCCCCCEEEEEcCCCHhHHHHHHHHHhcCCeEEecC--C---CCCHHHHHHHHHhccceEEEEc
Q 007169 130 LIYHGISKGSCIGLYFVNRPEWLIVDHACSAYSFISVPLY--D---TLGPDAVKYIVNHASVQAVFCV 192 (615)
Q Consensus 130 L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~--~---~~~~~~l~~il~~~~~~~vi~~ 192 (615)
+...++++||.|.+..+....+. .++...|+.++.++ + ....+.+...++. ++++|++.
T Consensus 71 ~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMALGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHTTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHcCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 33445788999888777666543 45566787665543 2 2467777777754 56666654
No 113
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=20.02 E-value=69 Score=30.15 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCC
Q 007169 124 TEVGSGLIYHGISKGSCIGLYFVN 147 (615)
Q Consensus 124 ~~la~~L~~~Gv~~gd~V~i~~~n 147 (615)
..+...|+++||++||.|.|.+.=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 345667999999999999999863
Done!