BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007170
(615 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2GBA4|RUVC_NOVAD Crossover junction endodeoxyribonuclease RuvC OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=ruvC PE=3 SV=1
Length = 158
Score = 38.9 bits (89), Expect = 0.11, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 437 LLRLDPGLTLIRSGVDPVSGSKNVTVS---VKALNKCGLVQKTEEKDAELKSESALVKPD 493
+L +DPGLT+ GV SGS+ V+ ++ NK + ++ E D+ L + + KPD
Sbjct: 3 ILGIDPGLTVTGWGVVAKSGSRLSHVANGQIRTDNKATMAERLVELDSALAAVIDIYKPD 62
Query: 494 GGAVENSMV 502
GAVE V
Sbjct: 63 TGAVEEVFV 71
>sp|Q8TUV8|GGR2_METKA Digeranylgeranylglycerophospholipid reductase 2 OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK1645 PE=3 SV=2
Length = 396
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 460 VTVSVKALNKCGLVQKTEEKDAELKSESA-LVKPDGGAVENSMVVCSELGGEVVNEPLLS 518
V V+V + CG V++T L ++A V P G ++ +VC + GEV E +
Sbjct: 252 VEVNVGGVPVCGPVERTYGDGILLVGDAARQVNPLTGGGLHTSLVCGRIAGEVAAEAIEE 311
Query: 519 DSKDAKSSIETDESPSEPDFNRVLKYTFQRKRKKDSMSN 557
D A S ++ + E +F + KY + + MSN
Sbjct: 312 DDTSA-SFLKRYQDRWEEEFGKTFKYALKASKIFSEMSN 349
>sp|P48354|GYRA_MYCS2 DNA gyrase subunit A OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=gyrA PE=3 SV=1
Length = 842
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 70 ITSLTKQRKVDEL---EAQLNEAEDVITD-------LRSELRWVTDKLEKVKNNPLQPVN 119
+ +L +Q+ VD+L EA++ + ED++ +R EL+ + DK + + P +
Sbjct: 444 LAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPAD 503
Query: 120 GQTTKEDAYSHEDVKV 135
G+ + ED + EDV V
Sbjct: 504 GEVSDEDLIAREDVVV 519
>sp|Q8A9U9|ATPF_BACTN ATP synthase subunit b OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=atpF
PE=3 SV=1
Length = 167
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 6 KMVALKKAYADIILNTAREAAARI--MASERQALRFEKDLSNTKDEALRLLVRVKQMIDS 63
KMV +K Y D L AREA A++ + E +AL ++ E R+L + D
Sbjct: 35 KMVEGRKTYIDQSLEVAREANAQLAHLKEEGEAL-----VAAANKEQGRILKEAMEERDK 89
Query: 64 TTKEA-EITSLTKQRKVDELEAQLN-EAEDVITDLRSELRWVT-DKLEKVKNNPLQPVNG 120
EA + + Q+++D ++ Q+ E ++ I D+R ++ ++ D EKV LQ
Sbjct: 90 IVHEARKQAEIAAQKELDAVKQQIQIEKDEAIRDIRRQVAVLSVDIAEKVLRKNLQDKES 149
Query: 121 Q 121
Q
Sbjct: 150 Q 150
>sp|Q64UA6|ATPF_BACFR ATP synthase subunit b OS=Bacteroides fragilis (strain YCH46)
GN=atpF PE=3 SV=1
Length = 165
Score = 33.9 bits (76), Expect = 4.3, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 6 KMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQ----MI 61
KMV +K Y D L AREA A++ + + E ++ E R++ Q +I
Sbjct: 35 KMVEGRKTYIDESLEVAREANAQLSRLKEEG---EAIVAAANKEQGRIMKEAMQEREKII 91
Query: 62 DSTTKEAEITSLTKQRKVDELEAQLN-EAEDVITDLRSELRWVT-DKLEKV 110
K+AEI + Q+++DE++ Q+ E ++ I D+R ++ ++ D EKV
Sbjct: 92 YEARKQAEIAA---QKELDEVKRQIQIEKDEAIRDIRRQVALLSVDIAEKV 139
>sp|Q5LD84|ATPF_BACFN ATP synthase subunit b OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=atpF PE=3 SV=1
Length = 165
Score = 33.9 bits (76), Expect = 4.3, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 6 KMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQ----MI 61
KMV +K Y D L AREA A++ + + E ++ E R++ Q +I
Sbjct: 35 KMVEGRKTYIDESLEVAREANAQLSRLKEEG---EAIVAAANKEQGRIMKEAMQEREKII 91
Query: 62 DSTTKEAEITSLTKQRKVDELEAQLN-EAEDVITDLRSELRWVT-DKLEKV 110
K+AEI + Q+++DE++ Q+ E ++ I D+R ++ ++ D EKV
Sbjct: 92 YEARKQAEIAA---QKELDEVKRQIQIEKDEAIRDIRRQVALLSVDIAEKV 139
>sp|Q9NSB8|HOME2_HUMAN Homer protein homolog 2 OS=Homo sapiens GN=HOMER2 PE=1 SV=1
Length = 354
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 72/130 (55%), Gaps = 24/130 (18%)
Query: 2 AESEKM-VALKKAYA-----DIILNTAREAAARIMASERQAL----RFEKDLSNTKDEAL 51
+E++K+ +AL ++ A +I L T RE+ AR+ + +++ ++++ S +DE
Sbjct: 164 SENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDEND 223
Query: 52 RLLVRVKQMIDSTT---KEAEITSLTKQRKVDELEAQLNEAEDVITDLR----------S 98
RL ++ ++ + + +E E + K R+++ELEA+L E E + DLR S
Sbjct: 224 RLRNKIDELEEQCSEINREKEKNTQLK-RRIEELEAELREKETELKDLRKQSEIIPQLMS 282
Query: 99 ELRWVTDKLE 108
E +V++KLE
Sbjct: 283 ECEYVSEKLE 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.125 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,148,992
Number of Sequences: 539616
Number of extensions: 9007118
Number of successful extensions: 28795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 28335
Number of HSP's gapped (non-prelim): 872
length of query: 615
length of database: 191,569,459
effective HSP length: 124
effective length of query: 491
effective length of database: 124,657,075
effective search space: 61206623825
effective search space used: 61206623825
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)