Query 007170
Match_columns 615
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 18:58:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq9_A Bone marrow stromal ant 93.1 1.1 3.8E-05 45.4 13.2 62 34-102 404-468 (471)
2 1zxa_A CGMP-dependent protein 81.6 1.3 4.6E-05 36.6 3.9 35 74-108 22-56 (67)
3 3nmd_A CGMP dependent protein 77.2 3.4 0.00011 34.8 5.0 50 49-102 16-65 (72)
4 3efg_A Protein SLYX homolog; x 76.5 3.7 0.00013 34.3 5.2 53 60-112 11-63 (78)
5 3hnw_A Uncharacterized protein 74.0 20 0.00069 32.6 9.7 77 27-109 50-135 (138)
6 3oja_B Anopheles plasmodium-re 73.8 75 0.0026 32.8 15.2 37 76-112 543-579 (597)
7 2fxo_A Myosin heavy chain, car 73.6 48 0.0016 29.3 14.0 61 40-100 60-120 (129)
8 2ocy_A RAB guanine nucleotide 72.9 15 0.0005 34.5 8.7 87 15-113 61-151 (154)
9 3na7_A HP0958; flagellar bioge 72.4 11 0.00037 36.4 8.0 45 49-94 5-49 (256)
10 3cve_A Homer protein homolog 1 68.0 13 0.00043 31.2 6.4 49 59-107 3-51 (72)
11 2efr_A General control protein 67.2 65 0.0022 30.1 11.7 20 26-45 34-53 (155)
12 3vkg_A Dynein heavy chain, cyt 67.2 56 0.0019 42.5 14.7 34 68-101 2019-2052(3245)
13 3oja_B Anopheles plasmodium-re 66.9 32 0.0011 35.5 10.7 40 69-108 522-561 (597)
14 3vkg_A Dynein heavy chain, cyt 66.6 36 0.0012 44.2 12.9 35 77-111 2014-2048(3245)
15 3na7_A HP0958; flagellar bioge 65.3 71 0.0024 30.7 12.1 49 60-108 101-149 (256)
16 3mq7_A Bone marrow stromal ant 65.1 29 0.00098 31.7 8.6 28 85-112 72-99 (121)
17 1i84_S Smooth muscle myosin he 63.9 23 0.00078 41.1 9.7 25 79-103 929-953 (1184)
18 3aco_A Pacsin2, protein kinase 61.8 1.1E+02 0.0039 29.9 13.0 103 9-111 85-226 (350)
19 2b9c_A Striated-muscle alpha t 60.6 57 0.002 29.9 9.9 75 1-98 48-122 (147)
20 1gd2_E Transcription factor PA 58.4 12 0.00042 30.9 4.6 34 77-110 29-62 (70)
21 1zvu_A Topoisomerase IV subuni 58.1 34 0.0012 38.7 9.5 105 4-115 347-454 (716)
22 3i00_A HIP-I, huntingtin-inter 57.9 40 0.0014 30.2 8.2 58 56-113 26-83 (120)
23 3cvf_A Homer-3, homer protein 57.2 27 0.00093 29.6 6.6 49 59-107 9-57 (79)
24 1ic2_A Tropomyosin alpha chain 57.1 75 0.0026 26.0 9.2 66 35-102 7-73 (81)
25 2xcs_B DNA gyrase subunit B, D 57.0 64 0.0022 36.4 11.4 91 4-111 579-678 (692)
26 3nmd_A CGMP dependent protein 56.8 35 0.0012 28.7 7.1 50 67-117 23-72 (72)
27 1t2k_D Cyclic-AMP-dependent tr 52.1 31 0.0011 26.9 5.8 36 76-111 21-56 (61)
28 4dk0_A Putative MACA; alpha-ha 51.8 48 0.0016 32.1 8.3 36 77-112 115-150 (369)
29 2dgc_A Protein (GCN4); basic d 50.7 18 0.00061 29.0 4.3 34 74-107 27-60 (63)
30 2qyw_A Vesicle transport throu 49.8 42 0.0014 28.8 6.8 58 37-103 18-75 (102)
31 3onj_A T-snare VTI1; helix, HA 49.0 40 0.0014 28.6 6.5 56 38-103 5-60 (97)
32 3tnu_B Keratin, type II cytosk 48.8 82 0.0028 27.6 8.7 25 85-109 76-100 (129)
33 3ilw_A DNA gyrase subunit A; D 48.0 91 0.0031 33.7 10.4 62 44-112 396-458 (470)
34 2wt7_A Proto-oncogene protein 47.8 39 0.0013 26.7 5.8 37 75-111 21-57 (63)
35 3efg_A Protein SLYX homolog; x 47.5 31 0.0011 28.8 5.4 35 77-111 14-48 (78)
36 3m9b_A Proteasome-associated A 46.9 15 0.00051 36.9 4.0 37 76-112 60-96 (251)
37 3haj_A Human pacsin2 F-BAR; pa 46.7 2.4E+02 0.0082 29.3 13.1 63 48-110 146-218 (486)
38 2e7s_A RAB guanine nucleotide 46.6 5.3 0.00018 36.9 0.7 74 23-108 57-134 (135)
39 1vcs_A Vesicle transport throu 46.4 27 0.00092 29.9 5.0 53 39-101 10-62 (102)
40 1ci6_A Transcription factor AT 45.7 43 0.0015 26.6 5.8 28 81-108 34-61 (63)
41 2i1j_A Moesin; FERM, coiled-co 45.5 8.4 0.00029 41.7 2.1 28 25-52 354-381 (575)
42 3hnw_A Uncharacterized protein 45.5 34 0.0011 31.1 5.8 40 73-112 71-110 (138)
43 1gk4_A Vimentin; intermediate 44.9 64 0.0022 26.7 6.9 49 51-109 3-51 (84)
44 3abh_A Pacsin2, protein kinase 44.9 1.4E+02 0.0048 28.6 10.3 64 9-72 85-177 (312)
45 3azd_A Short alpha-tropomyosin 43.3 9.9 0.00034 27.9 1.6 25 76-100 10-34 (37)
46 3tnu_A Keratin, type I cytoske 43.1 61 0.0021 28.6 6.9 24 85-108 78-101 (131)
47 2inr_A DNA topoisomerase 4 sub 43.0 1.4E+02 0.0047 32.7 10.9 35 78-112 462-496 (514)
48 1jnm_A Proto-oncogene C-JUN; B 43.0 37 0.0013 26.6 5.0 38 75-112 20-57 (62)
49 3m0d_C TNF receptor-associated 42.4 36 0.0012 27.2 4.9 32 79-110 8-39 (65)
50 2dfs_A Myosin-5A; myosin-V, in 42.3 36 0.0012 39.6 6.8 29 83-111 976-1004(1080)
51 2xdj_A Uncharacterized protein 42.2 76 0.0026 26.8 7.0 37 76-112 19-55 (83)
52 1fxk_C Protein (prefoldin); ar 41.2 40 0.0014 29.2 5.4 37 75-111 93-129 (133)
53 3i00_A HIP-I, huntingtin-inter 41.2 1.1E+02 0.0036 27.5 8.2 61 52-112 15-75 (120)
54 1ci6_A Transcription factor AT 41.1 42 0.0014 26.7 5.0 37 75-111 21-57 (63)
55 4b4t_J 26S protease regulatory 40.8 33 0.0011 35.9 5.7 49 56-111 18-66 (405)
56 1dh3_A Transcription factor CR 40.5 70 0.0024 24.9 6.1 29 77-112 22-50 (55)
57 1wt6_A Myotonin-protein kinase 40.3 1.2E+02 0.0042 26.1 8.0 31 82-112 43-73 (81)
58 3fpp_A Macrolide-specific effl 39.1 93 0.0032 29.8 8.1 37 76-112 113-149 (341)
59 3mq9_A Bone marrow stromal ant 38.6 3.2E+02 0.011 27.5 13.7 30 82-111 441-470 (471)
60 1gd2_E Transcription factor PA 37.9 50 0.0017 27.2 5.1 33 78-110 37-69 (70)
61 2v71_A Nuclear distribution pr 37.5 1.6E+02 0.0056 28.3 9.4 33 80-112 45-77 (189)
62 2f1m_A Acriflavine resistance 37.2 1.4E+02 0.0049 27.7 8.9 43 76-120 97-139 (277)
63 1l8d_A DNA double-strand break 34.9 89 0.003 26.1 6.4 44 78-121 11-55 (112)
64 4etp_A Kinesin-like protein KA 34.0 83 0.0029 32.6 7.3 51 64-114 11-61 (403)
65 2x3v_A Syndapin I, protein kin 33.9 3.3E+02 0.011 26.3 13.9 101 9-109 76-215 (337)
66 2no2_A HIP-I, huntingtin-inter 33.6 2.4E+02 0.0083 24.6 9.1 21 90-110 53-73 (107)
67 3u59_A Tropomyosin beta chain; 33.2 2.2E+02 0.0076 24.0 10.3 28 76-103 50-77 (101)
68 1yke_B RNA polymerase II holoe 33.2 58 0.002 30.1 5.3 43 73-115 88-134 (151)
69 3m91_A Proteasome-associated A 32.7 82 0.0028 24.8 5.3 36 76-111 15-50 (51)
70 2jee_A YIIU; FTSZ, septum, coi 32.6 68 0.0023 27.4 5.3 24 80-103 9-32 (81)
71 3m9b_A Proteasome-associated A 31.8 40 0.0014 33.8 4.3 37 76-112 53-89 (251)
72 2lw1_A ABC transporter ATP-bin 31.7 44 0.0015 27.8 3.9 32 78-109 37-74 (89)
73 2xkj_E Topoisomerase IV; type 31.2 2E+02 0.0067 33.0 10.1 98 5-109 642-742 (767)
74 2dfs_A Myosin-5A; myosin-V, in 30.9 1.2E+02 0.0042 35.3 8.7 10 93-102 993-1002(1080)
75 3trt_A Vimentin; cytoskeleton, 30.8 90 0.0031 24.9 5.5 26 86-111 51-76 (77)
76 3m91_A Proteasome-associated A 30.8 95 0.0032 24.4 5.4 34 78-111 10-43 (51)
77 2v0o_A FCHO2, FCH domain only 29.9 3.4E+02 0.011 25.1 13.6 59 44-102 128-188 (276)
78 1x8y_A Lamin A/C; structural p 29.4 92 0.0031 26.0 5.5 12 59-70 13-24 (86)
79 1m1j_C Fibrinogen gamma chain; 29.2 2.2E+02 0.0076 30.0 9.6 33 85-117 106-138 (409)
80 2lw1_A ABC transporter ATP-bin 29.2 89 0.0031 25.9 5.4 23 75-97 20-42 (89)
81 1t2k_D Cyclic-AMP-dependent tr 29.0 86 0.0029 24.4 4.9 31 77-107 29-59 (61)
82 3mov_A Lamin-B1; LMNB1, B-type 28.3 61 0.0021 27.8 4.3 24 85-108 38-61 (95)
83 2b5u_A Colicin E3; high resolu 28.1 1.7E+02 0.0057 32.4 8.5 26 87-112 345-370 (551)
84 2xnx_M M protein, M1-BC1; cell 28.0 1.6E+02 0.0056 27.6 7.4 57 53-111 51-107 (146)
85 3ni0_A Bone marrow stromal ant 27.7 3.2E+02 0.011 24.3 8.7 56 39-105 30-88 (99)
86 3kin_B Kinesin heavy chain; mo 27.5 85 0.0029 27.5 5.2 33 80-112 85-117 (117)
87 4ani_A Protein GRPE; chaperone 27.5 70 0.0024 31.2 5.1 35 78-112 60-94 (213)
88 2zdi_C Prefoldin subunit alpha 27.2 87 0.003 27.9 5.3 39 75-113 103-141 (151)
89 1zme_C Proline utilization tra 26.9 43 0.0015 25.5 2.9 24 78-101 45-68 (70)
90 2efl_A Formin-binding protein 26.5 4E+02 0.014 24.9 13.1 36 76-111 129-164 (305)
91 2er8_A Regulatory protein Leu3 26.0 28 0.00094 26.9 1.6 23 76-98 48-70 (72)
92 3gpv_A Transcriptional regulat 25.9 2.5E+02 0.0085 24.9 8.0 92 20-111 17-129 (148)
93 3m0a_A TNF receptor-associated 25.7 1.1E+02 0.0037 23.9 5.0 32 79-110 7-38 (66)
94 4dk0_A Putative MACA; alpha-ha 25.5 2.1E+02 0.0073 27.6 8.1 46 76-123 121-166 (369)
95 3ghg_A Fibrinogen alpha chain; 25.4 3.4E+02 0.012 30.1 10.3 45 75-119 122-166 (562)
96 1lwu_C Fibrinogen gamma chain; 25.3 98 0.0034 31.8 5.9 36 66-101 15-50 (323)
97 1c1g_A Tropomyosin; contractIl 24.7 3.5E+02 0.012 23.6 15.1 8 7-14 8-15 (284)
98 3u1c_A Tropomyosin alpha-1 cha 24.7 3.3E+02 0.011 23.2 10.3 35 66-102 42-76 (101)
99 2v4h_A NF-kappa-B essential mo 24.7 1.1E+02 0.0037 27.6 5.3 31 79-109 26-56 (110)
100 2nov_A DNA topoisomerase 4 sub 24.5 1.3E+02 0.0046 32.6 7.0 34 78-111 438-471 (496)
101 3he5_B Synzip2; heterodimeric 23.3 1.1E+02 0.0036 24.0 4.4 26 82-107 22-47 (52)
102 2wg5_A General control protein 23.1 71 0.0024 27.7 3.8 29 77-112 7-35 (109)
103 3tnu_B Keratin, type II cytosk 22.9 2.3E+02 0.0078 24.8 7.1 55 34-96 43-101 (129)
104 2p32_A Heat shock 70 kDa prote 22.7 2.7E+02 0.0091 23.7 7.4 45 41-87 14-63 (120)
105 2pms_C Pneumococcal surface pr 22.7 3.1E+02 0.011 25.1 8.0 26 26-51 12-37 (125)
106 1ykh_B RNA polymerase II holoe 22.6 1.4E+02 0.0047 26.8 5.7 36 73-111 88-123 (132)
107 1nkp_B MAX protein, MYC proto- 22.3 98 0.0033 25.1 4.3 47 63-110 34-80 (83)
108 3gp4_A Transcriptional regulat 22.1 3.8E+02 0.013 23.7 8.4 19 22-40 5-23 (142)
109 3oja_A Leucine-rich immune mol 21.7 1.9E+02 0.0064 29.4 7.2 83 26-108 304-398 (487)
110 3htk_A Structural maintenance 21.5 1.7E+02 0.0059 22.1 5.3 14 93-106 35-48 (60)
111 2z5i_A TM, general control pro 20.8 1E+02 0.0035 24.0 3.9 39 65-103 7-45 (52)
112 3p7i_A PHND, subunit of alkylp 20.8 1.3E+02 0.0045 29.3 5.6 40 49-93 264-307 (321)
113 1a93_B MAX protein, coiled coi 20.4 1.2E+02 0.0041 22.4 3.9 25 72-103 9-33 (34)
114 1go4_E MAD1 (mitotic arrest de 20.2 2.9E+02 0.0099 24.3 7.1 25 64-88 20-44 (100)
115 2wt7_B Transcription factor MA 20.0 1.7E+02 0.0059 25.3 5.5 33 79-111 50-82 (90)
No 1
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.09 E-value=1.1 Score=45.43 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhhcHHHH---HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007170 34 RQALRFEKDLSNTKDEA---LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (615)
Q Consensus 34 RkA~~~~qeL~~~Keea---L~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (615)
|+-.+++..+..++-+| =++.|-|-..+|.++.. +++||+|||+++.+.+.-+.+++.|++|
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 404 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ-------GQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444 35677777777666544 4469999999955555545555544444
No 2
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=81.57 E-value=1.3 Score=36.63 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=27.9
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007170 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (615)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (615)
.+.-+|.|||+.|.+..+.|+.||.+|.+.++.|.
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34568999999999999999999999999888776
No 3
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.20 E-value=3.4 Score=34.76 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007170 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (615)
Q Consensus 49 eaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (615)
|+.-++-.|+..+.-++ .| ...+..+|++||.+|.+-++.|+.||.||..
T Consensus 16 ~~mgti~eLq~~L~~K~--eE--Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 16 EGRGSLRDLQYALQEKI--EE--LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ---CHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554332 22 3345556899999988888777777776643
No 4
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=76.51 E-value=3.7 Score=34.31 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=41.6
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 60 m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.++.+|.+.|+...-|..-|++|-..+-.-+..|..|+..|+.+...|..+..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46778999999888888889999999888888888888888888888777664
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.01 E-value=20 Score=32.57 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHHHHHH----HHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH-----HhhhhhHHHHHHHhhhHHHHHHHH
Q 007170 27 ARIMASERQA----LRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSL-----TKQRKVDELEAQLNEAEDVITDLR 97 (615)
Q Consensus 27 aRVm~aERkA----~~~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl-----~~qrki~ELEaQL~eaed~v~~Lr 97 (615)
.+++-.+|.| .-+..||.-++++.-.+.-.|... +.|+.+| ..|-++++++.++.+++.-+..|+
T Consensus 50 ~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~------~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 50 YRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK------DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 456788888888865554443332 4444444 446778888888888888888888
Q ss_pred HHHHHHHHHHHH
Q 007170 98 SELRWVTDKLEK 109 (615)
Q Consensus 98 ~ELr~~~~eLEk 109 (615)
.++.++.++|+.
T Consensus 124 ~~~~~le~~~~~ 135 (138)
T 3hnw_A 124 KNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888887764
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.78 E-value=75 Score=32.81 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
++++++||.++.+.++.+..|+.|+...+.+|.++..
T Consensus 543 ~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 543 EQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888877764
No 7
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=73.55 E-value=48 Score=29.27 Aligned_cols=61 Identities=21% Similarity=0.281 Sum_probs=31.9
Q ss_pred hhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHH
Q 007170 40 EKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSEL 100 (615)
Q Consensus 40 ~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~EL 100 (615)
++++.+-.++-+..|..-|+-++.+|.+.+-..-..-....+|.+.-..+++-|.+|+..|
T Consensus 60 E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 60 EQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666676667766666666654333333344444444444444444444333
No 8
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.93 E-value=15 Score=34.52 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=60.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhhhh----cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhH
Q 007170 15 ADIILNTAREAAARIMASERQALRFEKDLSN----TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAE 90 (615)
Q Consensus 15 adiilntaKEAAaRVm~aERkA~~~~qeL~~----~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eae 90 (615)
....--.+.|.+.|. .+|+.-..+++||.. .=+||=.|. .+|-+..-.-.+|.+.|++||.+++
T Consensus 61 ~~L~~~l~~E~~~R~-~aE~~~~~ie~ElEeLTasLFeEAN~MV-----------a~ar~~~~~~e~r~~~L~~ql~e~~ 128 (154)
T 2ocy_A 61 KRLREDIAKENELRT-KAEEEADKLNKEVEDLTASLFDEANNMV-----------ADARKEKYAIEILNKRLTEQLREKD 128 (154)
T ss_dssp HHHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554 556666777888743 345555443 4555555566789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 007170 91 DVITDLRSELRWVTDKLEKVKNN 113 (615)
Q Consensus 91 d~v~~Lr~ELr~~~~eLEk~~~~ 113 (615)
.++..|+.+|..++..++.|.+-
T Consensus 129 ~~l~~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 129 TLLDTLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999988877653
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=72.41 E-value=11 Score=36.41 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHH
Q 007170 49 EALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVIT 94 (615)
Q Consensus 49 eaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~ 94 (615)
+-|..|+.| |-+|.+|.+.+-.--.-...+++|++++.++++-+.
T Consensus 5 ~~L~~L~~L-Q~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~ 49 (256)
T 3na7_A 5 THLKQLIEI-SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAIL 49 (256)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456667776 345555544333222224445555444444443333
No 10
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.99 E-value=13 Score=31.20 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=35.9
Q ss_pred hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007170 59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (615)
Q Consensus 59 qm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (615)
|.+..|+.++|...-.=..++..||.+|..++.-=..++.||+++..-|
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888887777677788888888777777777777777765444
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=67.20 E-value=65 Score=30.10 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 007170 26 AARIMASERQALRFEKDLSN 45 (615)
Q Consensus 26 AaRVm~aERkA~~~~qeL~~ 45 (615)
--|+-++|.|...++.+|.+
T Consensus 34 EERae~aE~k~~eLEeeL~~ 53 (155)
T 2efr_A 34 EERAELSEGKSAELEEELKT 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666654
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=67.17 E-value=56 Score=42.52 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007170 68 AEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (615)
Q Consensus 68 aE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (615)
||......+.+.++++++|.+.|+.|+.|+.++.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=66.86 E-value=32 Score=35.53 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=16.7
Q ss_pred HHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007170 69 EITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (615)
Q Consensus 69 E~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (615)
|..-...++.++++.+++...+.-+..|+..++..++.++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 3333334444444444444444444444443333333333
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.56 E-value=36 Score=44.17 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=17.4
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.+++++|++|..|+.....++.+|+.+.++|++++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~ 2048 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYK 2048 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444443
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.26 E-value=71 Score=30.69 Aligned_cols=49 Identities=8% Similarity=0.088 Sum_probs=28.5
Q ss_pred hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007170 60 MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLE 108 (615)
Q Consensus 60 m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (615)
....++...|-.-+..-.+|+++++.+.+++..+..++.+|.....+++
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666666655555444
No 16
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=65.09 E-value=29 Score=31.72 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=21.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 85 QLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
++.+.|+-|.+|..+|+.+-.++|.+|.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444588888888888888888885
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=63.85 E-value=23 Score=41.09 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=5.3
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 79 VDELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
+++|+++|.+.++.+.+|..+++.+
T Consensus 929 l~ele~elee~ee~l~el~~e~~~l 953 (1184)
T 1i84_S 929 LHEMEARIEEEEERSQQLQAEKKKM 953 (1184)
T ss_dssp HHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 18
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=61.81 E-value=1.1e+02 Score=29.95 Aligned_cols=103 Identities=9% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh--------------------------hhh---hhcHHHHHHHHHHhhh
Q 007170 9 ALKKAYADIILNTAREAAARIMASERQALRFE--------------------------KDL---SNTKDEALRLLVRVKQ 59 (615)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~~~--------------------------qeL---~~~KeeaL~~LlRLKq 59 (615)
.|..||..|+-.|...|..+...|+.=..... .++ .......+..|-+.|.
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 164 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776666666666665555543221111 111 2223445566777788
Q ss_pred hhchhhhHHHHhhHHh----------hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 60 MIDSTTKEAEITSLTK----------QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 60 m~Daki~EaE~~sl~~----------qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.++..-.|+|...... ++.++-+++++..++..+...+.+.+..-..+..++
T Consensus 165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~ 226 (350)
T 3aco_A 165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGT 226 (350)
T ss_dssp THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777654422 355566667776666666666665555544444443
No 19
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=60.60 E-value=57 Score=29.93 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhH
Q 007170 1 MAESEKMVALKKAYADIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVD 80 (615)
Q Consensus 1 Maese~l~ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ 80 (615)
|.|.+++.-|....-+.- .+|++|--..--+.||...++.+|..+.+-|-.. ..+|.
T Consensus 48 ~~deEr~~~lE~qLkeak-~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a----------------------E~k~~ 104 (147)
T 2b9c_A 48 QKDEEKMEIQEIQLKEAK-HIAEDADRKYEEVARKLVIIESDLERAEERAELS----------------------EGKCA 104 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
T ss_pred cccHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHH
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 007170 81 ELEAQLNEAEDVITDLRS 98 (615)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ 98 (615)
+||.+|...-+.+.+|.+
T Consensus 105 eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 105 ELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHH
No 20
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=58.36 E-value=12 Score=30.85 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=18.6
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
..|.+||.++.+.+....+|..|-..++..++.+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555555544444444443
No 21
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=58.05 E-value=34 Score=38.69 Aligned_cols=105 Identities=14% Similarity=0.211 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhH
Q 007170 4 SEKMVALKKAYA--DIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVD 80 (615)
Q Consensus 4 se~l~ALkkAya--diilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKqm~Daki~EaE~~sl~~qrki~ 80 (615)
-+.+++|.+||. |-+..+-+.+.. .|+ .|...+.-+..||=+.| |||.+..--.+.+.+.+--.-+.+|+
T Consensus 347 ~hiLegl~ia~~~iDeVI~iIR~s~~------~k~-~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~ 419 (716)
T 1zvu_A 347 LHILEGLLVAFLNIDEVIEIIRNEDE------PKP-ALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERD 419 (716)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHSSS------HHH-HHHHSTTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhhHHHHHHHHHhcCc------hHH-HHHHhcCCCHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 356788888885 333334433321 122 23333444556666555 67777654443333332223334455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007170 81 ELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPL 115 (615)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (615)
+|++=|..-+.+..-++.||+....+.-.-|....
T Consensus 420 ~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RRT~I 454 (716)
T 1zvu_A 420 QLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 454 (716)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCB
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 55555555555555556666655555544444443
No 22
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=57.89 E-value=40 Score=30.23 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=39.2
Q ss_pred HhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007170 56 RVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN 113 (615)
Q Consensus 56 RLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (615)
+||+-++.-..|+-..-..=..+|-+||++|.+........++|...++.+|+.++..
T Consensus 26 ~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 26 GLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555556677777777777777777788888888888877653
No 23
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=57.22 E-value=27 Score=29.63 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred hhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007170 59 QMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (615)
Q Consensus 59 qm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (615)
.-+..|+.++|...-.=..+|..||.+|.+++.-=..++.||+++..-|
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888887777777777777777777776677777777665443
No 24
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=57.15 E-value=75 Score=26.04 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHhhhhhhcHHHHHHHHHHhhhhhch-hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007170 35 QALRFEKDLSNTKDEALRLLVRVKQMIDS-TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (615)
Q Consensus 35 kA~~~~qeL~~~KeeaL~~LlRLKqm~Da-ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (615)
|-..+..++.++.+.|-.+--.|+..-.. .-.|.|+.+| ++||.-||.+|..++.-+.+....|..
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L--~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVAL--QKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444433221 1245555554 688999999988777766655555443
No 25
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=57.00 E-value=64 Score=36.41 Aligned_cols=91 Identities=22% Similarity=0.374 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHH--HHH------hhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHH
Q 007170 4 SEKMVALKKAYAD--IIL------NTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLT 74 (615)
Q Consensus 4 se~l~ALkkAyad--iil------ntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKqm~Daki~EaE~~sl~ 74 (615)
-+.+++|.+|+.. -|. ...+||-+++|. .| .-+..+|-+.| |||.++.--.+.+.+
T Consensus 579 ~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~------~f----~lse~Qa~aIL~m~L~rLt~le~~kl~----- 643 (692)
T 2xcs_B 579 AHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQ------RF----KLSEKQAQAILDMRLRRLTGLERDKIE----- 643 (692)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTCSSHHHHHHHHHH------HH----TCCHHHHHHHHTCBGGGGSTTHHHHHH-----
T ss_pred HHHHhhHHHHHHhHHHHHHHHHhCCCHHHHHHHHhh------cc----CCCHHHHHHHHHhHHHHhhhHHHHHHH-----
Confidence 3566778887763 222 233444444442 12 23444444433 466665544433333
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
..++||++++.+.++++++-..=.+-..+||+.++
T Consensus 644 --~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 678 (692)
T 2xcs_B 644 --AEYNELLNYISELETILADEEVLLQLVRDELTEIR 678 (692)
T ss_dssp --HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34555566666666666554433444455555554
No 26
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.76 E-value=35 Score=28.66 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=33.0
Q ss_pred HHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007170 67 EAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQP 117 (615)
Q Consensus 67 EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp 117 (615)
|.+...-.....|...|+.+.+.|..+.....|++.++.+|.|.+. .++|
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS-Vl~p 72 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS-VIRP 72 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCC
Confidence 3333333344455666777778888888888888888888888876 4443
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=52.10 E-value=31 Score=26.93 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
...+++||.+....+..-.+|+.|+..++.++..++
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888888887777665
No 28
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.82 E-value=48 Score=32.14 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=24.5
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
...++.++++..|+.-+..++.+|+.++.+|+.++.
T Consensus 115 ~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666677777777777777777664
No 29
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.71 E-value=18 Score=29.02 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=22.1
Q ss_pred HhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007170 74 TKQRKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (615)
Q Consensus 74 ~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (615)
..+..+++||.++...+..-..|+.|+..++.+|
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888886666666666666666655554
No 30
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.83 E-value=42 Score=28.77 Aligned_cols=58 Identities=16% Similarity=0.328 Sum_probs=41.2
Q ss_pred HHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 37 LRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 37 ~~~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
..|+++....-.+.-+.|-+|...... | .....|.+.|..|.||+++|..+..|++.+
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~---e------~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGT---E------EKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCS---H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCc---H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457888888888877777766433211 1 123458899999999999999988887653
No 31
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=49.02 E-value=40 Score=28.57 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 38 RFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 38 ~~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
.|+++...+-++.-+.|-+|...- .| .....|.+.|..|.||+++|..+..|++-+
T Consensus 5 ~YE~df~~~~~~i~~~l~~~~~~~----ge------~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 5 SYESDFKTTLEQAKASLAEAPSQP----LS------QRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSC----HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC----hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 477888888888877777664111 11 123457888999999999999999888877
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.77 E-value=82 Score=27.65 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=16.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Q 007170 85 QLNEAEDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk 109 (615)
+|..++.+|..|..||++++.+++.
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445566677777777777766654
No 33
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=48.01 E-value=91 Score=33.72 Aligned_cols=62 Identities=15% Similarity=0.306 Sum_probs=36.9
Q ss_pred hhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 44 SNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 44 ~~~KeeaL~~L-lRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.-+..+|=+.| |||.++..-.+.+. +..++||++++.+.++++++-..-.+-..+||+.+++
T Consensus 396 ~lse~Qa~aIl~mrL~rLt~le~~kl-------~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~ 458 (470)
T 3ilw_A 396 DIDEIQAQAILDMQLRRLAALERQRI-------IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVD 458 (470)
T ss_dssp TCCHHHHHHHHTCBGGGGSHHHHHHH-------HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34566776666 67776654333222 3345666666666677766666556666666666654
No 34
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.82 E-value=39 Score=26.71 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=26.0
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.+..|++||.+....+..-..|+.|+..+..++..+.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777777777777777777777777777766654
No 35
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=47.47 E-value=31 Score=28.77 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=27.0
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.||.+||.+|--.+++|.+|-..+-+-+.++++++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998888888887777666666666655
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.90 E-value=15 Score=36.92 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
++.++.|++|.+-..+.+..||.||.+++.||++++.
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566777777777778888999999999999999885
No 37
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=46.75 E-value=2.4e+02 Score=29.34 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhchhhhHHHHhhHHh----------hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 48 DEALRLLVRVKQMIDSTTKEAEITSLTK----------QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 48 eeaL~~LlRLKqm~Daki~EaE~~sl~~----------qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
++.+..|-+.|..++..-.|+|...... ++.++-+++++..++..+...+.+.+..-..+++.
T Consensus 146 ~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~ 218 (486)
T 3haj_A 146 AKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQG 218 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777766666553221 24455566666666655555555555554444433
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.57 E-value=5.3 Score=36.90 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh----cHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHH
Q 007170 23 REAAARIMASERQALRFEKDLSN----TKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRS 98 (615)
Q Consensus 23 KEAAaRVm~aERkA~~~~qeL~~----~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ 98 (615)
.|.+.| ..||..-..+++||.. .=+||=.|. .+|-+..-.-.+|.+.|++||.+++.++..|+.
T Consensus 57 eE~~~R-~~aE~~~~~ie~ElE~LTasLFeEAN~MV-----------a~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~ 124 (135)
T 2e7s_A 57 KENELR-TKAEEEADKLNKEVEDLTASLFDEANNLV-----------ADARMEKYAIEILNKRLTEQLREKDMLLDTLTL 124 (135)
T ss_dssp HTTSHH-HHHHHTTHHHHHHHHHHHHHHHHHHHHHH-----------HHTTHHHHHHHHHHHHHHHTTTHHHHCC-----
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 3456666667777643 335554443 333344444578899999999999999999999
Q ss_pred HHHHHHHHHH
Q 007170 99 ELRWVTDKLE 108 (615)
Q Consensus 99 ELr~~~~eLE 108 (615)
.|+.++..++
T Consensus 125 QL~~LK~v~~ 134 (135)
T 2e7s_A 125 QLKNLKKVMH 134 (135)
T ss_dssp ----------
T ss_pred HHHHHHHHhc
Confidence 9998877664
No 39
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=46.41 E-value=27 Score=29.91 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=33.6
Q ss_pred HhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007170 39 FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (615)
Q Consensus 39 ~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (615)
|+++....-.+.-+.|-+|... + --.....|.+.|..|.||+++|..+..|++
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~-~---------geerk~~i~~ie~~l~EA~ell~qMelE~r 62 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRL-P---------PDEKKQMVANVEKQLEEARELLEQMDLEVR 62 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGS-C---------TTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-C---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766665432 1 011234577788888888888877666644
No 40
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.74 E-value=43 Score=26.61 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=12.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 007170 81 ELEAQLNEAEDVITDLRSELRWVTDKLE 108 (615)
Q Consensus 81 ELEaQL~eaed~v~~Lr~ELr~~~~eLE 108 (615)
+|+.+-.+.+.-|..|+.|+.++...|.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333345555555555555443
No 41
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.46 E-value=8.4 Score=41.67 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcHHHHHH
Q 007170 25 AAARIMASERQALRFEKDLSNTKDEALR 52 (615)
Q Consensus 25 AAaRVm~aERkA~~~~qeL~~~KeeaL~ 52 (615)
|-.-+.-+|++|..|+.++.-+.+||..
T Consensus 354 ~~~~l~~~~~~~~~l~e~~~~~~~e~~~ 381 (575)
T 2i1j_A 354 SQANLLEAQDMILRLEEQLRQLQAAKEE 381 (575)
T ss_dssp HHHHHHHHHHC-----------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344566788888888888887777653
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=45.46 E-value=34 Score=31.11 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=30.1
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
+.-++++++|++++.+.+.-+-+|+.||..++-++|.+.+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888888877777776653
No 43
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.87 E-value=64 Score=26.73 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007170 51 LRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 51 L~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (615)
|.-|...+..++..|.|+|- ..+.++..++.+|..|..||.+++.+++.
T Consensus 3 l~~l~~~~~sLE~~l~e~e~----------~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEE----------NFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 44
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=44.86 E-value=1.4e+02 Score=28.60 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhh-----------------------------hhcHHHHHHHHHHhhh
Q 007170 9 ALKKAYADIILNTAREAAARIMASERQALRFEKDL-----------------------------SNTKDEALRLLVRVKQ 59 (615)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~~~qeL-----------------------------~~~KeeaL~~LlRLKq 59 (615)
.|..||..|+-.|...|..+...|+.=.......| .......+..|-+.|.
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~ 164 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777676666666555554322221111 1223344555667777
Q ss_pred hhchhhhHHHHhh
Q 007170 60 MIDSTTKEAEITS 72 (615)
Q Consensus 60 m~Daki~EaE~~s 72 (615)
-++..-.|+|...
T Consensus 165 ~Y~~~c~e~e~a~ 177 (312)
T 3abh_A 165 AHHAACKEEKLAI 177 (312)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
No 45
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=43.26 E-value=9.9 Score=27.95 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHH
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSEL 100 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~EL 100 (615)
++||+.|+.|+..||+-+..|..+|
T Consensus 10 KkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 10 RRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999888766
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.12 E-value=61 Score=28.63 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=13.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 007170 85 QLNEAEDVITDLRSELRWVTDKLE 108 (615)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLE 108 (615)
+|..++.+|..|..||++++.+++
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 47
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=42.99 E-value=1.4e+02 Score=32.66 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=18.4
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.++||++++.+.++++++-..=..-..+||+.+++
T Consensus 462 E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~ 496 (514)
T 2inr_A 462 EHKELEALIKQLRHILDNHDALLNVIKEELNEIKK 496 (514)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34555566555666555543334444555555553
No 48
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.96 E-value=37 Score=26.60 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=29.9
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
....|++||.++.+.+..-..|+.|+..+..++..++.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888888888888888888888877654
No 49
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=42.44 E-value=36 Score=27.23 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.4
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
|-+||+.+...|.||..|..|+.|...+||..
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~ 39 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55678888888999988888888888888865
No 50
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.25 E-value=36 Score=39.60 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=15.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 83 EAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 83 EaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
++++++++..|..|..|+...+.+++++.
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555544
No 51
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.15 E-value=76 Score=26.84 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.+-.-+|.-||...+.=|+.||-.+.+...+|+++..
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344556666666666677777777777777777764
No 52
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.21 E-value=40 Score=29.16 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
=.+|++.|+.++...+..+..++..+..+...|+++.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999998875
No 53
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.16 E-value=1.1e+02 Score=27.50 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=45.4
Q ss_pred HHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 52 RLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 52 ~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.++-+|+.-++.-..|-|..-...|+-|..|+.|+.+.|.-+..=|.+.+.+..+.+.++.
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~ 75 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRA 75 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888888888888888888666666666666666666677777773
No 54
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.06 E-value=42 Score=26.70 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=31.4
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
...++++|+.++++.+....+|+.++..+..|+..++
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999999998887765
No 55
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.79 E-value=33 Score=35.91 Aligned_cols=49 Identities=29% Similarity=0.484 Sum_probs=29.8
Q ss_pred HhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 56 RVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 56 RLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.|++.+..+|.|.|..-...+..+..||+|... |..+.++.++|++.++
T Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-------l~~~~~~~~~e~~~l~ 66 (405)
T 4b4t_J 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNA-------LNDKVRFIKDELRLLQ 66 (405)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 357778888888888777777777888888554 4555555556665544
No 56
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.47 E-value=70 Score=24.91 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=20.3
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.-+++||.+ |..|..|-..+..+++.++.
T Consensus 22 ~~~~~LE~~-------v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 22 EYVKSLENR-------VAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 337888888 66677777777777776664
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.28 E-value=1.2e+02 Score=26.05 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=23.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 82 LEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
++.+|.+|+-.-.+|..|++.++.+|+.++.
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666688888888888888888764
No 58
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=39.10 E-value=93 Score=29.82 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
+...++.++++..++.-+..++.+|..++..|+.++.
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKT 149 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777777777776664
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.57 E-value=3.2e+02 Score=27.54 Aligned_cols=30 Identities=23% Similarity=0.363 Sum_probs=22.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 82 LEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
-++.++|.|.-|+.|-.+|+....+.|..|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446777777778888888888777777654
No 60
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.87 E-value=50 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=20.5
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
++.+||.....+..-...||.++..+..||+..
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555667777777777777654
No 61
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=37.46 E-value=1.6e+02 Score=28.32 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=25.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 80 DELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.|||++|..++...++|+..+.++..+++..+.
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~ 77 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKE 77 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888877764
No 62
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=37.16 E-value=1.4e+02 Score=27.70 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNG 120 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~ 120 (615)
+..+++.++++..|+.-+..++.+|+.++..|+.+.- .-|.+|
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I--~AP~~G 139 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAAKAAVETARINLAYTKV--TSPISG 139 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEE--CCSSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEE--ECCCCe
Confidence 3456677777777777788888888888888876542 345555
No 63
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.86 E-value=89 Score=26.12 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=32.3
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCC
Q 007170 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN-NPLQPVNGQ 121 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~-~~~qp~n~q 121 (615)
+++++..+|.+..+.++.|+.++......|..+.. +..+|+=|+
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs 55 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGR 55 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 56777777777777788888888888888877766 555665553
No 64
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.05 E-value=83 Score=32.60 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=30.8
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007170 64 TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNP 114 (615)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~ 114 (615)
+|.+.+.....-+++|+++++.+.+.+..+.....+-|++..+|..++.+.
T Consensus 11 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 11 KIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 344444444444556666666666666666666666666777777777543
No 65
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=33.93 E-value=3.3e+02 Score=26.28 Aligned_cols=101 Identities=11% Similarity=0.194 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHhhh----------------------hhhcHHHHHHHHHHhhh
Q 007170 9 ALKKAYADIILNTAREAAARIMASERQAL-------RFEKD----------------------LSNTKDEALRLLVRVKQ 59 (615)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~-------~~~qe----------------------L~~~KeeaL~~LlRLKq 59 (615)
.|..||..|+-.+...|..+...|+.=.. .|..| +.....+.+..|-+.|.
T Consensus 76 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk 155 (337)
T 2x3v_A 76 SLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKK 155 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667777776666666665554443321 11111 22333445667788888
Q ss_pred hhchhhhHHHHhhHH----------hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007170 60 MIDSTTKEAEITSLT----------KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 60 m~Daki~EaE~~sl~----------~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (615)
.++..-.|+|.+... -.+.++-+++++..++..+...+.+.+..-..++.
T Consensus 156 ~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~ 215 (337)
T 2x3v_A 156 AYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGK 215 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887754321 12345555666666655555555554444333333
No 66
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=33.63 E-value=2.4e+02 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007170 90 EDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 90 ed~v~~Lr~ELr~~~~eLEk~ 110 (615)
.+.|..|+-||....++|..+
T Consensus 53 ~~~le~lk~eL~~~~~el~~l 73 (107)
T 2no2_A 53 LEVLESLKQELATSQRELQVL 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444443
No 67
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.22 E-value=2.2e+02 Score=24.05 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
++||.-||.+|..+++-+.+++..|...
T Consensus 50 ~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 50 QKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444443
No 68
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.16 E-value=58 Score=30.08 Aligned_cols=43 Identities=30% Similarity=0.353 Sum_probs=27.5
Q ss_pred HHhhhhhHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHhcCCC
Q 007170 73 LTKQRKVDELEAQLNEAED----VITDLRSELRWVTDKLEKVKNNPL 115 (615)
Q Consensus 73 l~~qrki~ELEaQL~eaed----~v~~Lr~ELr~~~~eLEk~~~~~~ 115 (615)
-.|.++|.+||+++.+++. .|..-...|.+++.-|..+..+++
T Consensus 88 eeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l 134 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIA 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999987753 444445555555555555555554
No 69
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=32.73 E-value=82 Score=24.76 Aligned_cols=36 Identities=14% Similarity=0.380 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
++++.-|-++-+...+...+-|.||..++.+|+++.
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555557777777777777777777663
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.59 E-value=68 Score=27.42 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=12.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 80 DELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
+.||++++.|=|+|+-||.|+.+.
T Consensus 9 eqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554433
No 71
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.77 E-value=40 Score=33.84 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
-.++.+|+.|+..++.-...|..+|+.++.||++++.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999985
No 72
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.73 E-value=44 Score=27.77 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=17.5
Q ss_pred hhHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHH
Q 007170 78 KVDELEAQLNEA------EDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 78 ki~ELEaQL~ea------ed~v~~Lr~ELr~~~~eLEk 109 (615)
+|.+|+++|... -+.+..|..+|..+..+|+.
T Consensus 37 ~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 37 KLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666666432 13455666666666665554
No 73
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=31.16 E-value=2e+02 Score=32.95 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=48.4
Q ss_pred HHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcHHHHHHHH-HHhhhhhchhhhHHHHhhHHhhhhhHH
Q 007170 5 EKMVALKKAYA--DIILNTAREAAARIMASERQALRFEKDLSNTKDEALRLL-VRVKQMIDSTTKEAEITSLTKQRKVDE 81 (615)
Q Consensus 5 e~l~ALkkAya--diilntaKEAAaRVm~aERkA~~~~qeL~~~KeeaL~~L-lRLKqm~Daki~EaE~~sl~~qrki~E 81 (615)
+.+++|..||. |-+..+-+.+.. .|+. +...+.-+..+|-+.| |||.++.--.+.+.+.+--.-+.+|++
T Consensus 642 hiLegl~ia~~~iD~vI~iIr~s~~------~k~~-L~~~f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~ 714 (767)
T 2xkj_E 642 HILAGLLIAYLDIDTVIRIIREEDQ------PKPV-LMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAI 714 (767)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHCSS------HHHH-HHHHHTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHhccc------hHHH-HHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 46678888873 333333333221 1222 2233444566776666 477777655444443333333344555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007170 82 LEAQLNEAEDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (615)
|+.-|..-+-+..-++.||.....+.-.
T Consensus 715 l~~iL~~~~~~~~~i~~el~~~~~~yg~ 742 (767)
T 2xkj_E 715 IREQLENPESLKNLIISELKEDAKKFGD 742 (767)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 5554444444444455555555555433
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.90 E-value=1.2e+02 Score=35.30 Aligned_cols=10 Identities=50% Similarity=0.647 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 007170 93 ITDLRSELRW 102 (615)
Q Consensus 93 v~~Lr~ELr~ 102 (615)
+..|+.++..
T Consensus 993 ~~~l~~~~~~ 1002 (1080)
T 2dfs_A 993 IAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 75
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.84 E-value=90 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=17.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 86 LNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 86 L~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
|+.+..-|.+||.-++++..+|+-++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556667777777777777777664
No 76
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.83 E-value=95 Score=24.39 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=21.8
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
+..+|.+|+..+..--..|-..|++++++|++++
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666667777777776665
No 77
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=29.90 E-value=3.4e+02 Score=25.11 Aligned_cols=59 Identities=15% Similarity=0.145 Sum_probs=36.2
Q ss_pred hhcHHHHHHHHHHhhhhhchhhhHHHHhhH--HhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007170 44 SNTKDEALRLLVRVKQMIDSTTKEAEITSL--TKQRKVDELEAQLNEAEDVITDLRSELRW 102 (615)
Q Consensus 44 ~~~KeeaL~~LlRLKqm~Daki~EaE~~sl--~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (615)
..-..+++..|-+.|..++..-.|+|.... .-.+.++.+++++..|++-....-..+..
T Consensus 128 ~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~ 188 (276)
T 2v0o_A 128 VQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYAL 188 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677888899999888888886431 12355666777777666544333333333
No 78
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.39 E-value=92 Score=26.00 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=6.6
Q ss_pred hhhchhhhHHHH
Q 007170 59 QMIDSTTKEAEI 70 (615)
Q Consensus 59 qm~Daki~EaE~ 70 (615)
..++..+.|+|-
T Consensus 13 ~~Le~~l~e~E~ 24 (86)
T 1x8y_A 13 AAKEAKLRDLED 24 (86)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345556666554
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.23 E-value=2.2e+02 Score=30.02 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007170 85 QLNEAEDVITDLRSELRWVTDKLEKVKNNPLQP 117 (615)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp 117 (615)
++...|.++..++..|..+...+.++......|
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~~~~ 138 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKIAQLESHCQEP 138 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcc
Confidence 333333334444444555455454444444333
No 80
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.23 E-value=89 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=9.1
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHH
Q 007170 75 KQRKVDELEAQLNEAEDVITDLR 97 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr 97 (615)
+||.++.|++++...|.-|+.|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le 42 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333
No 81
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.96 E-value=86 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.8
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKL 107 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eL 107 (615)
.++++|+.+-.+.+..|..|+.|+.++...|
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777777777888888888877655
No 82
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=28.26 E-value=61 Score=27.84 Aligned_cols=24 Identities=17% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 007170 85 QLNEAEDVITDLRSELRWVTDKLE 108 (615)
Q Consensus 85 QL~eaed~v~~Lr~ELr~~~~eLE 108 (615)
++...+.+|..|..||++++.+++
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~ 61 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQ 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544
No 83
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=28.11 E-value=1.7e+02 Score=32.38 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 87 NEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 87 ~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.-++.++-++|.||..++..|-.+-.
T Consensus 345 ~~t~~~~~~~~~~~~~~n~~~~~~~~ 370 (551)
T 2b5u_A 345 AKAVQVYNSRKSELDAANKTLADAIA 370 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHH
Confidence 35667788888888877777765543
No 84
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=28.05 E-value=1.6e+02 Score=27.60 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=40.6
Q ss_pred HHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 53 LLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 53 ~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
++=-..-.|.+.|.|+++.++. |.++...+-+.+++.-++.|+.++..+..++.++.
T Consensus 51 i~eas~~~~~~~~le~~~~~l~--rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLe 107 (146)
T 2xnx_M 51 IDQASQDYNRANVLEKELEAIT--REQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLE 107 (146)
T ss_dssp HHHHHHTTTTHHHHTTTTTTHH--HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhhhhhhhhhhHhhHHHHH--HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344567778888888874 55666677777777778888888888888887765
No 85
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.65 E-value=3.2e+02 Score=24.30 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=31.1
Q ss_pred HhhhhhhcHHHHH---HHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 007170 39 FEKDLSNTKDEAL---RLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTD 105 (615)
Q Consensus 39 ~~qeL~~~KeeaL---~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~ 105 (615)
-+..|..+..+|- ++++-|+..++.+ -..+..+|.+++||+.. |..|..+|+.+..
T Consensus 30 Aq~~l~~~eaQAaTCNqTV~tL~~SL~ke----kaq~q~qq~~v~elqgE-------I~~Lnq~Lqda~~ 88 (99)
T 3ni0_A 30 TQDSLLQAETQANSCNLTVVTLQESLEKK----VSQALEQQARIKELENE-------VTKLNQELENLRI 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 3344444444443 3455665554432 12345566677777666 7777777777664
No 86
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.49 E-value=85 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 80 DELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 80 ~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
++|..++......+..|+..+.....||+.+|+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455555555555667777777777777777664
No 87
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.48 E-value=70 Score=31.16 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=21.9
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
.++.|+++|.+++.-+++|+..+.|+..+++.+|+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666677777766664
No 88
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=27.17 E-value=87 Score=27.88 Aligned_cols=39 Identities=13% Similarity=0.379 Sum_probs=34.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNN 113 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~ 113 (615)
=.+|++.|+.++...+..+..++..+..+...|+++...
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999988753
No 89
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.91 E-value=43 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=17.1
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHH
Q 007170 78 KVDELEAQLNEAEDVITDLRSELR 101 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr 101 (615)
.|++||.++...|..|..|+..|+
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377788887777777777776553
No 90
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=26.48 E-value=4e+02 Score=24.85 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=17.3
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
++.+.+....|..|...-..+-.|+..++..++++.
T Consensus 129 ~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~ 164 (305)
T 2efl_A 129 QQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMD 164 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444445555555555544443
No 91
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=25.95 E-value=28 Score=26.89 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHH
Q 007170 76 QRKVDELEAQLNEAEDVITDLRS 98 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ 98 (615)
..+|++||+++.+.+..|..|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888887777776666543
No 92
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.94 E-value=2.5e+02 Score=24.90 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hhhh--cH---------HHHHHHHHHhhhhhchhhhHHHHhhHHh---------hhh
Q 007170 20 NTAREAAARIMASERQALRFEK-DLSN--TK---------DEALRLLVRVKQMIDSTTKEAEITSLTK---------QRK 78 (615)
Q Consensus 20 ntaKEAAaRVm~aERkA~~~~q-eL~~--~K---------eeaL~~LlRLKqm~Daki~EaE~~sl~~---------qrk 78 (615)
=+..|.|.+.=++-+--..|+. +|.. .+ ++.|..|..++.+-+.-+.=+|+..+.. ...
T Consensus 17 ~~I~evA~~~gvs~~tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~ 96 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHR 96 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHH
Confidence 3567777777777766666654 3442 22 4556555555554443333333333332 123
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.+-|++|+.+.+.-|.+|+.-+..+...++..+
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666665554
No 93
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=25.67 E-value=1.1e+02 Score=23.94 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.1
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
+..||+.+...|+||..+..|+.|....++..
T Consensus 7 ~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~ 38 (66)
T 3m0a_A 7 CESLEKKTATFENIVCVLNREVERVAMTAEAC 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44568888888999999888888888888865
No 94
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.50 E-value=2.1e+02 Score=27.58 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=32.9
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcc
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVNGQTT 123 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n~q~~ 123 (615)
+...+.++++|..++.-+..++.+|..++..|+.+. ..-|.+|-..
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~--i~AP~~G~V~ 166 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK--ITSPIDGTVI 166 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS--CCCSCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE--EECCCCeEEE
Confidence 445566777777777778888889988888887654 3457777443
No 95
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.40 E-value=3.4e+02 Score=30.13 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=28.7
Q ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007170 75 KQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKNNPLQPVN 119 (615)
Q Consensus 75 ~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~~~~qp~n 119 (615)
=+++|+.-=.+|.-+|.+|+++++|++++.--+.-....+.-||.
T Consensus 122 LKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 122 LKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 344454444677778888999999999987554433333444444
No 96
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.30 E-value=98 Score=31.76 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=20.6
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007170 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (615)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (615)
..-|..-+.+..+|..|+++|...+..|..|...|.
T Consensus 15 ~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 15 RILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666666665555555544443
No 97
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=24.70 E-value=3.5e+02 Score=23.55 Aligned_cols=8 Identities=38% Similarity=0.202 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 007170 7 MVALKKAY 14 (615)
Q Consensus 7 l~ALkkAy 14 (615)
+.+|+.-|
T Consensus 8 ~~~l~~~~ 15 (284)
T 1c1g_A 8 MQMLKLDK 15 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 33444333
No 98
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.67 E-value=3.3e+02 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=18.6
Q ss_pred hHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHH
Q 007170 66 KEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRW 102 (615)
Q Consensus 66 ~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~ 102 (615)
.|.|+.+| ++||.-||..|..+++-+.+....|..
T Consensus 42 ~E~Ei~sL--~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 42 LEDDIVQL--EKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554 455666666665555555554444443
No 99
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.66 E-value=1.1e+02 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=14.5
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007170 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (615)
|++|-++|..||..++.-+.+..+++.++++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444444444433
No 100
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=24.47 E-value=1.3e+02 Score=32.59 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=16.5
Q ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 78 KVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 78 ki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.++||++++.+.++++++-..=..-..+||+.++
T Consensus 438 E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~ 471 (496)
T 2nov_A 438 EEAELREKIAMLAAIIGDERTMYNLMKKELREVK 471 (496)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3455555555555555543222333445555544
No 101
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.27 E-value=1.1e+02 Score=24.05 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007170 82 LEAQLNEAEDVITDLRSELRWVTDKL 107 (615)
Q Consensus 82 LEaQL~eaed~v~~Lr~ELr~~~~eL 107 (615)
||..-+..|.||+.||.|+-|+..|.
T Consensus 22 lerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 22 LERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 45555678899999999999887654
No 102
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.14 E-value=71 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.417 Sum_probs=18.7
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
-+.+.|+++ ..+|+.|+++.+++|+.++.
T Consensus 7 ~~~~~l~~~-------~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 7 HRMKQLEDK-------VEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp --CHHHHHH-------HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHhC
Confidence 345667777 55666677777777777775
No 103
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=22.90 E-value=2.3e+02 Score=24.80 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhH----HhhhhhHHHHHHHhhhHHHHHHH
Q 007170 34 RQALRFEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSL----TKQRKVDELEAQLNEAEDVITDL 96 (615)
Q Consensus 34 RkA~~~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl----~~qrki~ELEaQL~eaed~v~~L 96 (615)
|....++-||.+ |...+..++..|.|+|-.-- .-|.+|.+||++|..+..-++..
T Consensus 43 r~iq~L~~el~~--------l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 43 RMIQRLRAEIDN--------VKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555543 33446667777777765332 23556667777765554444443
No 104
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=22.75 E-value=2.7e+02 Score=23.73 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=28.5
Q ss_pred hhhhhcHHHHHHHHHHhhhhhch-----hhhHHHHhhHHhhhhhHHHHHHHh
Q 007170 41 KDLSNTKDEALRLLVRVKQMIDS-----TTKEAEITSLTKQRKVDELEAQLN 87 (615)
Q Consensus 41 qeL~~~KeeaL~~LlRLKqm~Da-----ki~EaE~~sl~~qrki~ELEaQL~ 87 (615)
.+++.+|.+|=.++..++..++. ++.+.|+..+ ...|++|+.-|.
T Consensus 14 re~iEarN~aEsliy~~e~~L~e~~~~dkl~~eek~~I--~~~i~el~~~L~ 63 (120)
T 2p32_A 14 LVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKI--EDKCDEILKWLD 63 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCTTTGGGSCHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhccCCHHHHHHH--HHHHHHHHHHHH
Confidence 46777888888888888887764 4555555443 234455555444
No 105
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=22.70 E-value=3.1e+02 Score=25.09 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhcHHHHH
Q 007170 26 AARIMASERQALRFEKDLSNTKDEAL 51 (615)
Q Consensus 26 AaRVm~aERkA~~~~qeL~~~KeeaL 51 (615)
.+.|--.|.+.+.++..|...+++..
T Consensus 12 ~~KvAElekkv~~lek~lk~~~e~d~ 37 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEIDESES 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 45666788899999998888877654
No 106
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.55 E-value=1.4e+02 Score=26.85 Aligned_cols=36 Identities=25% Similarity=0.335 Sum_probs=23.9
Q ss_pred HHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 73 LTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 73 l~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
-.|.++|.+||+++++++. .|+..++++...|++++
T Consensus 88 e~Q~~ri~~L~~E~~~~~~---el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVED---EKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3678999999999888764 34444555555555544
No 107
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.25 E-value=98 Score=25.14 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=33.3
Q ss_pred hhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 63 STTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 63 aki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
.+..-+++- -.-..=|..|+.+.+..+.-+..|+.|...+...|..+
T Consensus 34 ~k~sK~~iL-~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 34 EKASRAQIL-DKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp SCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555553 33355688888888888888888888888888777654
No 108
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.06 E-value=3.8e+02 Score=23.65 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007170 22 AREAAARIMASERQALRFE 40 (615)
Q Consensus 22 aKEAAaRVm~aERkA~~~~ 40 (615)
..|.|.+.=++-+--..|+
T Consensus 5 I~e~A~~~gvs~~tLR~Ye 23 (142)
T 3gp4_A 5 IKEASEKSGVSADTIRYYE 23 (142)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 3455555555544444444
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.72 E-value=1.9e+02 Score=29.39 Aligned_cols=83 Identities=16% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHH---------HHHHhhhhhhcHHHHHHHHHHhhhhhch---hhhHHHHhhHHhhhhhHHHHHHHhhhHHHH
Q 007170 26 AARIMASERQ---------ALRFEKDLSNTKDEALRLLVRVKQMIDS---TTKEAEITSLTKQRKVDELEAQLNEAEDVI 93 (615)
Q Consensus 26 AaRVm~aERk---------A~~~~qeL~~~KeeaL~~LlRLKqm~Da---ki~EaE~~sl~~qrki~ELEaQL~eaed~v 93 (615)
+.|+++.+|+ ...|+.|+.....=-=+-||+|.....+ ++...+.....-+++-++||.++...+...
T Consensus 304 ~~~l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV~L~gyC~s~~~~~~~~~~~~~~l~~~~~~le~~~~~~~~~~ 383 (487)
T 3oja_A 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383 (487)
T ss_dssp HHHHHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhcccccHHHHHHHHHHHhcccccchhhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 007170 94 TDLRSELRWVTDKLE 108 (615)
Q Consensus 94 ~~Lr~ELr~~~~eLE 108 (615)
.+.+.+++.....+|
T Consensus 384 ~~~~~~~~~~~~~~e 398 (487)
T 3oja_A 384 AELDGTLQQAVGQIE 398 (487)
T ss_dssp HHHHHHHHHHTTSSC
T ss_pred hhhhhhHHHhhchhh
No 110
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.50 E-value=1.7e+02 Score=22.15 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 007170 93 ITDLRSELRWVTDK 106 (615)
Q Consensus 93 v~~Lr~ELr~~~~e 106 (615)
+..+..+|..+++.
T Consensus 35 ~~~~~~~l~~~~~~ 48 (60)
T 3htk_A 35 INEIFEKLNTIRDE 48 (60)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 111
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.83 E-value=1e+02 Score=23.97 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=27.2
Q ss_pred hhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 65 TKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 65 i~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
-..||..--.=|+.|+.||..|-........++.||...
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345666666667788888888777776677777666654
No 112
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=20.76 E-value=1.3e+02 Score=29.28 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=27.2
Q ss_pred HHHHHHHHhhh----hhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHH
Q 007170 49 EALRLLVRVKQ----MIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVI 93 (615)
Q Consensus 49 eaL~~LlRLKq----m~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v 93 (615)
+.++.|.+.|+ +-|+.+.++|. |.|+.+++++|.+.+.-+
T Consensus 264 ~~ir~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 307 (321)
T 3p7i_A 264 VPIRQLALFKEMQSVKDNKGLNEQDK-----LAKTTAIQAQLDDLDRLN 307 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCChHHH-----HHHHHHHHHHHHHHHHHH
Confidence 56777777777 55566666665 678899999976554333
No 113
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.41 E-value=1.2e+02 Score=22.42 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.4
Q ss_pred hHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
Q 007170 72 SLTKQRKVDELEAQLNEAEDVITDLRSELRWV 103 (615)
Q Consensus 72 sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~ 103 (615)
.-++|.-|+||..| -+-|+.++||+
T Consensus 9 n~a~qqDIddlkrQ-------N~~Le~Qir~l 33 (34)
T 1a93_B 9 NDTHQQDIDDLKRQ-------NALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHC
T ss_pred hHhhHhhHHHHHHH-------HHHHHHHHHhc
Confidence 55788999999999 66677777763
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.20 E-value=2.9e+02 Score=24.33 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=15.6
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhh
Q 007170 64 TTKEAEITSLTKQRKVDELEAQLNE 88 (615)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~e 88 (615)
+|.+.|+..-.=.+++++||.+|..
T Consensus 20 ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 20 KVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556677888888765
No 115
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=20.01 E-value=1.7e+02 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=23.4
Q ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 79 VDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 79 i~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
+.+||.+....+.-|..|+.|+.+...|+..++
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777776665
Done!