Query 007170
Match_columns 615
No_of_seqs 26 out of 28
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 18:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007170.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007170hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ykhb1 a.252.1.1 (B:2-130) RN 43.1 15 0.0011 31.0 5.1 34 74-107 88-125 (129)
2 d1qvra2 c.37.1.20 (A:149-535) 42.8 36 0.0026 32.6 8.6 35 78-112 297-334 (387)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 38.2 23 0.0016 28.5 5.4 36 76-111 94-129 (133)
4 d1vcsa1 a.47.2.1 (A:8-96) Vesi 37.2 29 0.0021 27.3 5.8 53 39-101 3-55 (89)
5 d1nkpa_ a.38.1.1 (A:) Myc prot 26.2 44 0.0032 25.4 5.0 47 64-111 40-86 (88)
6 d2efka1 a.238.1.4 (A:10-288) C 26.1 1.7E+02 0.013 24.3 13.4 64 9-72 59-143 (279)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 21.3 54 0.0039 24.5 4.5 34 76-109 46-79 (79)
8 d1nkpb_ a.38.1.1 (B:) Max prot 16.5 74 0.0054 23.8 4.3 47 64-111 35-81 (83)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 16.0 85 0.0062 24.5 4.8 34 77-110 72-105 (107)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 15.6 1E+02 0.0076 24.3 5.3 11 208-218 93-103 (133)
No 1
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.09 E-value=15 Score=31.03 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=21.6
Q ss_pred HhhhhhHHHHHHHhhhHH----HHHHHHHHHHHHHHHH
Q 007170 74 TKQRKVDELEAQLNEAED----VITDLRSELRWVTDKL 107 (615)
Q Consensus 74 ~~qrki~ELEaQL~eaed----~v~~Lr~ELr~~~~eL 107 (615)
.|.++|.+||+++++++. +|++....|.++..-|
T Consensus 88 ~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i 125 (129)
T d1ykhb1 88 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999988763 3444444444444333
No 2
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=42.79 E-value=36 Score=32.61 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=20.7
Q ss_pred hhHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHhc
Q 007170 78 KVDELEAQLNEAE---DVITDLRSELRWVTDKLEKVKN 112 (615)
Q Consensus 78 ki~ELEaQL~eae---d~v~~Lr~ELr~~~~eLEk~~~ 112 (615)
+.+.|++|...-. +-+.+|+.+|..++.+++.+..
T Consensus 297 ~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r 334 (387)
T d1qvra2 297 EIAKLRAEWEREREILRKLREAQHRLDEVRREIELAER 334 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555443333 4456677777777777776654
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=38.24 E-value=23 Score=28.52 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
.+||++|+.++...++-+..++..+.....+++++.
T Consensus 94 ~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777887777777777777777777777776653
No 4
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.16 E-value=29 Score=27.34 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=35.3
Q ss_pred HhhhhhhcHHHHHHHHHHhhhhhchhhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHH
Q 007170 39 FEKDLSNTKDEALRLLVRVKQMIDSTTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELR 101 (615)
Q Consensus 39 ~~qeL~~~KeeaL~~LlRLKqm~Daki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr 101 (615)
|+++.+..-.+.-+.|-++...- . | .....|.+.|.+|.||+++|..+..|++
T Consensus 3 YE~~y~~l~a~i~~kl~~i~~~~-g---e------erk~~l~~ie~~leEA~ell~qMelEvr 55 (89)
T d1vcsa1 3 YEQDFAVLTAEITSKIARVPRLP-P---D------EKKQMVANVEKQLEEARELLEQMDLEVR 55 (89)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSC-T---T------THHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-c---h------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56777777777777776665422 1 1 1235677888888888888887766643
No 5
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.22 E-value=44 Score=25.43 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=33.7
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 64 TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
+..-+++ .-.-..-|..|++++.+++.-+..|+.++..+..+|..++
T Consensus 40 k~sK~~i-L~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 40 KAPKVVI-LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp TCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445554 2233566888888888888888888888888888887664
No 6
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.14 E-value=1.7e+02 Score=24.30 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh---------------------hhhhhcHHHHHHHHHHhhhhhchhhhH
Q 007170 9 ALKKAYADIILNTAREAAARIMASERQALRFE---------------------KDLSNTKDEALRLLVRVKQMIDSTTKE 67 (615)
Q Consensus 9 ALkkAyadiilntaKEAAaRVm~aERkA~~~~---------------------qeL~~~KeeaL~~LlRLKqm~Daki~E 67 (615)
.+..||..++-.+-..|...--.++.-...+. ..+...-.++...|.+.|..++....|
T Consensus 59 s~~~~~~~~~~~~~~~a~~~~~~~~~l~~~i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e 138 (279)
T d2efka1 59 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 138 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666655554444443322211 222333345677777888888777777
Q ss_pred HHHhh
Q 007170 68 AEITS 72 (615)
Q Consensus 68 aE~~s 72 (615)
+|...
T Consensus 139 ~e~~~ 143 (279)
T d2efka1 139 AEKAA 143 (279)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.32 E-value=54 Score=24.45 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=24.4
Q ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007170 76 QRKVDELEAQLNEAEDVITDLRSELRWVTDKLEK 109 (615)
Q Consensus 76 qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk 109 (615)
..=|..|+.++...+.-+..|+.+.+..+..|++
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~~ 79 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567777777777777777777777777777653
No 8
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.46 E-value=74 Score=23.84 Aligned_cols=47 Identities=11% Similarity=0.201 Sum_probs=29.3
Q ss_pred hhhHHHHhhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Q 007170 64 TTKEAEITSLTKQRKVDELEAQLNEAEDVITDLRSELRWVTDKLEKVK 111 (615)
Q Consensus 64 ki~EaE~~sl~~qrki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~~ 111 (615)
+..-+++-. .-..=|..|+.+++..+.-+..|+.+...+..+|+.++
T Consensus 35 k~sK~~iL~-~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 81 (83)
T d1nkpb_ 35 KASRAQILD-KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444422 22345777777777777777777777777777766543
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.96 E-value=85 Score=24.53 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=24.9
Q ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007170 77 RKVDELEAQLNEAEDVITDLRSELRWVTDKLEKV 110 (615)
Q Consensus 77 rki~ELEaQL~eaed~v~~Lr~ELr~~~~eLEk~ 110 (615)
.+++.|+..+...+.-+..|+.+|...+..|.+|
T Consensus 72 ~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~~~ 105 (107)
T d1fxka_ 72 EKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777777777777765
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.62 E-value=1e+02 Score=24.31 Aligned_cols=11 Identities=27% Similarity=0.280 Sum_probs=4.8
Q ss_pred hhhHHHHhhhh
Q 007170 208 CTQRIRALESN 218 (615)
Q Consensus 208 cTQRIrAle~n 218 (615)
+..||..|+..
T Consensus 93 l~~ri~~l~~~ 103 (133)
T d1fxkc_ 93 IKSQKNELEST 103 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
Done!