BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007174
         (614 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WIJ|A Chain A, Solution Structure Of The Dna-Binding Domain Of Ethylene-
           Insensitive3-Like3
          Length = 140

 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/130 (66%), Positives = 100/130 (76%), Gaps = 1/130 (0%)

Query: 175 TLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAXXXXXXXXXXXXXXLGLPKDQGPPP 234
            LQ+LQD TLGSLLS+LMQHC+PPQR++PLEKG                LGLPK Q PP 
Sbjct: 11  VLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQSPP- 69

Query: 235 YKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEE 294
           Y+KPHDLKK WKVGVLTAVI HM PDIAKI++ VRQSKCLQDKMTAKESA WLA++NQEE
Sbjct: 70  YRKPHDLKKMWKVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEE 129

Query: 295 ALSRKLYPDS 304
           +L ++  P S
Sbjct: 130 SLIQQSGPSS 139


>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri
 pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Substrate
           Dihydrouracil
 pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
 pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
 pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
 pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
           Saccharomyces Kluyveri In Complex With The Reaction
           Product N-carbamyl-beta-alanine
          Length = 559

 Score = 32.7 bits (73), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 96  GILKYMLKMMEV-CKAQGFVYGIIPEKGKPVTGASD-NLRAWWKEKVRFDRN 145
           G L  M+K++E+ C     VYG+ P+KG  + G SD +L  W+ +  + + N
Sbjct: 411 GNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYN 462


>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
 pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
          Length = 453

 Score = 28.9 bits (63), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 97  ILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLRAW 135
           +L   LK   V +AQ      +P++GKP+T    + R+W
Sbjct: 35  LLDICLKRATVQRAQHVFQHAVPQEGKPITNQKSSGRSW 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,473,792
Number of Sequences: 62578
Number of extensions: 680097
Number of successful extensions: 1303
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1298
Number of HSP's gapped (non-prelim): 7
length of query: 614
length of database: 14,973,337
effective HSP length: 105
effective length of query: 509
effective length of database: 8,402,647
effective search space: 4276947323
effective search space used: 4276947323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)