Query 007174
Match_columns 614
No_of_seqs 101 out of 124
Neff 2.7
Searched_HMMs 46136
Date Thu Mar 28 19:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03109 ETHYLENE-INSENSITIVE3 100.0 3E-148 7E-153 1163.6 35.3 301 32-335 25-334 (599)
2 PF04873 EIN3: Ethylene insens 100.0 5E-116 1E-120 893.5 1.1 347 47-427 1-354 (354)
3 PF11001 DUF2841: Protein of u 97.0 0.0011 2.5E-08 61.4 5.5 82 175-272 16-103 (126)
4 PF00843 Arena_nucleocap: Aren 46.9 14 0.0003 41.6 2.5 160 95-290 269-487 (533)
5 PHA02767 hypothetical protein; 36.1 27 0.0006 31.8 2.2 26 80-105 43-68 (101)
6 KOG3263 Nucleic acid binding p 33.9 24 0.00052 35.6 1.6 22 100-128 145-166 (196)
7 KOG4215 Hepatocyte nuclear fac 33.4 9.1 0.0002 42.1 -1.4 23 411-433 40-62 (432)
8 PF07440 Caerin_1: Caerin 1 pr 23.4 36 0.00078 24.4 0.6 15 247-261 3-17 (24)
9 PF11628 TCR_zetazeta: T-cell 22.2 19 0.00042 27.5 -1.0 6 113-118 13-18 (33)
10 COG2091 Sfp Phosphopantetheiny 20.6 91 0.002 31.7 3.1 36 88-126 41-78 (223)
No 1
>PLN03109 ETHYLENE-INSENSITIVE3-like3 protein; Provisional
Probab=100.00 E-value=3e-148 Score=1163.59 Aligned_cols=301 Identities=64% Similarity=1.115 Sum_probs=280.3
Q ss_pred cccccccCccccCCHHHHHHhhhhhhHHHHHhhhhhcccccc--ccccccccHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 007174 32 ETAVEEDCSDEEVDVDELERRMWRDRLLLKRLKEQNKSKEGV--DSAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCK 109 (614)
Q Consensus 32 ~~~~e~~~sdeei~~~eL~~rmWkDr~~lkrlke~~~~~~~~--~~~~~~~~~eq~rrKkMsRAQDgiLkyMlKmMEvC~ 109 (614)
++++|+|+||||||+||||||||||||+||||||++|..+.. +..|+++++||||||||+||||||||||||||||||
T Consensus 25 ~~~~~~~~sdeei~~~el~rrmwkd~~~l~rlke~~~~~~~~~~e~~~~~~~~~~arrkkm~raqdgilkymlk~me~c~ 104 (599)
T PLN03109 25 DNLTENDVSDEEIEAEDLERRMWKDRIKLKRIKERQKKLQQAALEKSKPKKISDQARRKKMSRAQDGILKYMLKLMEVCK 104 (599)
T ss_pred CCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999998875443 477889999999999999999999999999999999
Q ss_pred hccceeeeccCCCccccCCChhhHHHHhhhhcccccchhhhhhhhhccCCCCCCCCCCcccCccchhhhcchhhhhhHHH
Q 007174 110 AQGFVYGIIPEKGKPVTGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNEDFGTVVSTPHTLQELQDTTLGSLLS 189 (614)
Q Consensus 110 aqGFVYGIIpekGkPvsGaSdnlR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllS 189 (614)
||||||||||||||||||||||||+|||||||||||||||||||++||++++.++.... +++|+|+||||||||||||
T Consensus 105 a~gfvygiipekgkpvsg~sd~lr~wwk~~v~fd~~gp~ai~ky~~~~~~~~~~~~~~~--~~~~~l~~lqd~tLgslls 182 (599)
T PLN03109 105 ARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMGEAESSGN--NSQHSLQDLQDATLGSLLS 182 (599)
T ss_pred hcceeEEeccCCCCCCCCCchHHHHHHHHhcccccccHHHHHHhhhhcccccccccCCc--ccHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888765553 8999999999999999999
Q ss_pred HhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhccCcCHHHHHHHHH
Q 007174 190 ALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVR 269 (614)
Q Consensus 190 aLmqHC~PpQRr~PlekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLtAVIKHmsPd~~kir~lVr 269 (614)
||||||+|||||||||||+||||||||+|+||++||+|++++ |||||||||||||||||||||||||||||+|||+|||
T Consensus 183 almqhC~Ppqr~~plekg~~PPWWPtg~E~WW~~~g~~~~~~-pPykkphdLkK~wKv~vl~avikhmsPd~~kir~~vr 261 (599)
T PLN03109 183 SLMQHCDPPQRKYPLEKGVPPPWWPSGNEDWWVKLGLPKGQS-PPYKKPHDLKKMWKVGVLTAVIKHMSPDFDKIRRHVR 261 (599)
T ss_pred HHHhhcCChhhcCCCCCCCCCCCCCCCCcchhhhcCCCCCCC-CCCCCchhhhhHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999865 9999999999999999999999999999999999999
Q ss_pred hhccccchhhHHhHhHHHHHHhhHHHhhhhcCCCCC-------CCCCCCCCCcccccCCCcccccccccccch
Q 007174 270 QSKCLQDKMTAKESATWLAIINQEEALSRKLYPDSC-------IPASTGGSGSFIISDISDYDVEGVDNERNV 335 (614)
Q Consensus 270 qSkclqdKmTakEs~tWl~vl~qEE~l~r~l~p~~~-------p~~s~~g~~~~~~~~~~eYDV~g~~~~~~~ 335 (614)
||||||||||||||+||++||+|||+|++++..+.. |+.+.++....++|+++||||||+||.+..
T Consensus 262 ~Sk~lqdkmtakEs~~W~~vl~~Ee~~~~~~s~DNGtS~ITe~P~g~~~~rk~~~~SSdsdYDVDg~eD~~gS 334 (599)
T PLN03109 262 QSKCLQDKMTAKESLIWLGVLNREESLIRQPSSDNGTSGITETPRGGHEDRNKDAISSDSDYDVDGLEDAPGS 334 (599)
T ss_pred hchhHHhhhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccCCCCccccCCCCCcCCCcccccccccCCCCC
Confidence 999999999999999999999999999999877653 232344455668899999999999998754
No 2
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=100.00 E-value=5.1e-116 Score=893.55 Aligned_cols=347 Identities=43% Similarity=0.774 Sum_probs=95.9
Q ss_pred HHHHHhhhhhhHHHHHhhhhhcc----ccc-cccccccccHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccceeeeccCC
Q 007174 47 DELERRMWRDRLLLKRLKEQNKS----KEG-VDSAKHRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEK 121 (614)
Q Consensus 47 ~eL~~rmWkDr~~lkrlke~~~~----~~~-~~~~~~~~~~eq~rrKkMsRAQDgiLkyMlKmMEvC~aqGFVYGIIpek 121 (614)
|||++|||||+|+|+||++++.. ++. ....|..+..||+|||+|+||||||||||+||||||||+||||||||++
T Consensus 1 EElkk~~~~dq~~~r~~~~r~~~~~~~~e~a~~~~k~~~~~eq~~kr~~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~ 80 (354)
T PF04873_consen 1 EELKKRMWKDQMPVRRLHSRKLQLMEDQEPATGAKKSNKPNEQIRKRKMSRAQDGILKYMFPEMELCNAPGFVYTIISSS 80 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhhhccChhhcchHHHHhhcccccccccccccccccCCcHHHHHhhhhhhhhhHHHHhhccccccccCceeeecCCCCC
Confidence 79999999999999999998644 222 3344567889999999999999999999999999999999999999999
Q ss_pred CccccCCChhhHHHHhhhhcccccchhhhhhhhhccCCCCCCCCCCc-ccCccchhhhcchhhhhhHHHHhhhcCCCCcc
Q 007174 122 GKPVTGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNEDFGT-VVSTPHTLQELQDTTLGSLLSALMQHCNPPQR 200 (614)
Q Consensus 122 GkPvsGaSdnlR~WWKekVrFDrngPaAiaky~~~~~~~~~~~~~~~-~~~~~h~L~~LqDtTLgsllSaLmqHC~PpQR 200 (614)
||||+|+|||||+||||+|+||+|||+||+||++++.+.+...++.. .....|+|++|||||||||||||||||+||||
T Consensus 81 ~k~~~~~s~slr~wwke~v~~~~ng~~~vs~~~~~~l~ls~~~~lq~~rs~~~~sl~~vpDTd~gSLL~a~~q~~~~p~~ 160 (354)
T PF04873_consen 81 GKPVEGVSPSLRAWWKEEVEFDRNGPIQVSKYDPKDLVLSGERGLQTERSSESTSLSLVPDTDLGSLLSALMQHCTPPQR 160 (354)
T ss_dssp -------------------------------------------------------STTS-HHHHHHHHHHHSSSSSS-TT
T ss_pred CCccCCcCCcccchhhhhhhcCcccccccCCcchhhhcccCCCCcccccccccccccccCCcccccccccccccCCCCcc
Confidence 99999999999999999999999999999999999999888777644 57889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhccCcCHHHHHHHHHhhccccchhhH
Q 007174 201 RFPLEKGVAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTA 280 (614)
Q Consensus 201 r~PlekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLtAVIKHmsPd~~kir~lVrqSkclqdKmTa 280 (614)
||||++|++|||||||+|.||+++|+++++||||||+||||||||||+||+||||||+|+|.+||++|++|+|||+|||+
T Consensus 161 ~~~~~~~~~~Pwwp~gkE~~~~~~g~s~~~~~~~~k~p~~lkk~~k~~~L~~~ikH~~~~~~~me~seldtq~LQnK~Sk 240 (354)
T PF04873_consen 161 CFPLEKGIEPPWWPTGKELWWGELGCSKDTGPPPYKKPHDLKKAWKVSVLRAEIKHMSPTFDEMEESELDTQYLQNKMSK 240 (354)
T ss_dssp S--TTT--HHHH---S--HHHHHHT--TT--------GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--S
T ss_pred CcccccccCCCCCCCCccccccccCCcCCCCCCCccChHHhhhcccccchhhhhccCCcchHHHHHhhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhHHHHHHhhHHHhhhhcCCCCCCCCCCCCCCcccccCCCcccccccccccchhhhhcCccccccccccccccccccC
Q 007174 281 KESATWLAIINQEEALSRKLYPDSCIPASTGGSGSFIISDISDYDVEGVDNERNVEVEEIKPLEANLFNMGAMGSRDRLM 360 (614)
Q Consensus 281 kEs~tWl~vl~qEE~l~r~l~p~~~p~~s~~g~~~~~~~~~~eYDV~g~~~~~~~~v~~~kp~~~~~~n~~~~~~~~~~~ 360 (614)
+||.||+++++|||++++.+|++ +.....++..++++.+.+|||+|.++.....++.....
T Consensus 241 rqSfa~~s~~~qEEk~~~~v~a~--s~S~~kqsp~vt~e~~qeee~qG~~Es~i~~vq~~~~~----------------- 301 (354)
T PF04873_consen 241 RQSFAWFSNPGQEEKECRTVCAH--SRSLRKQSPKVTLECEQEEEVQGKEESKIKHVQAVSAT----------------- 301 (354)
T ss_dssp HHHHHHHHHHTTTTT-S---------------------------------------------------------------
T ss_pred hhhhhhhcccCchhhhccccCCC--cchhhccCCCccccccchhhccCccccccccccccccc-----------------
Confidence 99999999999999999999988 22234455666777888999999877554433321110
Q ss_pred CCCCCCCCccccccccchhhHhhhcc-CCCCCCCCCCCcccccCCCCCCCCCCCCCCCCccccCCccc
Q 007174 361 MPPSLVPRIKGEVFETHSESIQKRRQ-SADEPHMTIDQKIYTCEFTQCPYNDYHHGFLDRTSRNNHQL 427 (614)
Q Consensus 361 ~~~~~~~~~k~e~~~~~~~f~~KRk~-~~~e~~~~~dqkvYTCen~qCP~Sd~~~GF~DRnsR~nHq~ 427 (614)
.+..++.||+. +.......+...+|+|+++|||+|+..+||.|+|.|++|+|
T Consensus 302 ---------------~~~~~v~Qrkrkpgd~a~~s~~~~srlCqssq~~gsE~eli~~Dkn~isqn~y 354 (354)
T PF04873_consen 302 ---------------NGFPVVCQRKRKPGDYAKCSIKGVSRLCQSSQCPGSETELIFADKNGISQNPY 354 (354)
T ss_dssp --------------------------------------------------------------------
T ss_pred ---------------cCCccccccCCCCCccccccccccccCCccccCCCcccccCcCCccccccCCC
Confidence 24566777773 33333333333479999999999999999999999999997
No 3
>PF11001 DUF2841: Protein of unknown function (DUF2841); InterPro: IPR021264 This family of proteins with unknown function are all present in yeast.
Probab=97.01 E-value=0.0011 Score=61.36 Aligned_cols=82 Identities=24% Similarity=0.624 Sum_probs=65.8
Q ss_pred hhhhcchhhhhhHHHHhhhcCCC-CccCCCCCCC--CCCCCCCCCCCCcccccCCCCCCCCCCCCCCcchhhhhhhhhhh
Q 007174 175 TLQELQDTTLGSLLSALMQHCNP-PQRRFPLEKG--VAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAWKVGVLT 251 (614)
Q Consensus 175 ~L~~LqDtTLgsllSaLmqHC~P-pQRr~PlekG--~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKawKV~VLt 251 (614)
.+..||-+.--.+..|-..-=.| -|.+||-.+| ..|+|||.+ .++|-|.-|+|.-.|.+|+
T Consensus 16 ~F~~lqQ~~Ck~IAKawIK~IEPkKQ~~~PY~~g~~tkP~WWP~~----------------V~HkEPDHL~K~eRi~LLi 79 (126)
T PF11001_consen 16 AFKALQQVNCKQIAKAWIKVIEPKKQAKYPYNGGDKTKPPWWPED----------------VRHKEPDHLKKPERIRLLI 79 (126)
T ss_pred HHHHcChhHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCC----------------CCcCCCCccCHHHHHHHHH
Confidence 35667777777777777766666 5899999999 599999944 6899999999999999999
Q ss_pred hhhhccCc---CHHHHHHHHHhhc
Q 007174 252 AVIKHMSP---DIAKIRKLVRQSK 272 (614)
Q Consensus 252 AVIKHmsP---d~~kir~lVrqSk 272 (614)
.+++.+.+ ..++++.+.+.+.
T Consensus 80 hIlr~l~~~~~t~~kL~~a~~~~~ 103 (126)
T PF11001_consen 80 HILRNLRPHGITVDKLEEATQDVR 103 (126)
T ss_pred HHHHhccccCCcHHHHHHHHHHHH
Confidence 99999877 6677777665553
No 4
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=46.94 E-value=14 Score=41.55 Aligned_cols=160 Identities=26% Similarity=0.409 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHhhccceeeeccC----------------CCccccCCChhh--HHHHhhhhcccccchhhhhhhhhc
Q 007174 95 DGILKYMLKMMEVCKAQGFVYGIIPE----------------KGKPVTGASDNL--RAWWKEKVRFDRNGPAAIAKYQAD 156 (614)
Q Consensus 95 DgiLkyMlKmMEvC~aqGFVYGIIpe----------------kGkPvsGaSdnl--R~WWKekVrFDrngPaAiaky~~~ 156 (614)
+.|||-+|+ |=++-|-.-+..|- .|=|-.||--.| |+|=---|-|+...+..-
T Consensus 269 ~~iiK~~L~---vK~~e~MFv~~~pG~RNPYENlLYKlCLSGeGWPYI~SRSqI~GRAWDNT~VDl~~~p~~~~------ 339 (533)
T PF00843_consen 269 STIIKAVLK---VKRREGMFVSETPGQRNPYENLLYKLCLSGEGWPYIGSRSQIKGRAWDNTTVDLTGKPDSGP------ 339 (533)
T ss_dssp HHHHHHHHH---HHHHHT----SSSSS--HHHHHHHHHHH-SSB-TTTSBGTT--S-HHHHEEEE---------------
T ss_pred HHHHHHHHH---HHHhcCcccCCCCCCCCcHHHHHHHHhcCCCCCCceeecccccccccCCcEEeCCCCCCCCC------
Confidence 467776664 44555544454443 567777776666 899888899988765111
Q ss_pred cCCCCCCCCCCcccCccchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC----
Q 007174 157 HAIPGKNEDFGTVVSTPHTLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGP---- 232 (614)
Q Consensus 157 ~~~~~~~~~~~~~~~~~h~L~~LqDtTLgsllSaLmqHC~PpQRr~PlekG~~PPWWPtG~E~WW~~~g~~~~~gp---- 232 (614)
..|..+ ...+.+..|.+.|-.. |...|+.-+|-- ..|=.=.|-|.|++-
T Consensus 340 -~~p~~n----g~~~~l~~Lt~~qe~~----lk~am~~Ldp~~------------------ttWiDIEG~p~DPVElAiy 392 (533)
T PF00843_consen 340 -PPPVRN----GGNPRLSGLTESQEMQ----LKDAMEKLDPNA------------------TTWIDIEGPPNDPVELAIY 392 (533)
T ss_dssp -----------------SSS-HHHHHH----HHHHHCCS-TTS-------------------EEEEEESETTSESEEEEE
T ss_pred -CCccCC----CCCCCCCCCCHHHHHH----HHHHHHhCCCCC------------------CeeEecCCCCCCCeEEEEe
Confidence 112222 1223334455555444 444555555532 234444566655431
Q ss_pred --------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHH-----hhcccc
Q 007174 233 --------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVR-----QSKCLQ 275 (614)
Q Consensus 233 --------PPYkkPhdLkKaw-----------------KV~VLtAVIKHmsPd~-------~kir~lVr-----qSkclq 275 (614)
-=||+|||.|-.= .-|+++|||+|+-++. +.||+|.- .=|-+-
T Consensus 393 QP~sg~YiHcyR~P~D~K~FK~~SKysHGillkDl~~aqPGL~S~vi~~LP~~MVlT~QGsDDIrkLld~hGRrDiKlvD 472 (533)
T PF00843_consen 393 QPSSGNYIHCYREPHDEKQFKNQSKYSHGILLKDLENAQPGLTSAVIELLPKNMVLTCQGSDDIRKLLDMHGRRDIKLVD 472 (533)
T ss_dssp ETTTTEEEEEE---S-HHHHHHHHHHTT-B-GGGCTTB-TTHHHHHHHHS-TT-EEEESSHHHHHHHHHCTT-TTSEEEE
T ss_pred ccCCCcEEEEecCCcchhhhcccccccccccHHHHhhhccchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCCcceEEE
Confidence 1399999987431 2489999999999986 88999973 235555
Q ss_pred chhhHHhHhHHHHHH
Q 007174 276 DKMTAKESATWLAII 290 (614)
Q Consensus 276 dKmTakEs~tWl~vl 290 (614)
=|||+.+|......+
T Consensus 473 V~lt~eqaR~FEd~V 487 (533)
T PF00843_consen 473 VKLTSEQARKFEDQV 487 (533)
T ss_dssp ----HHHHTTTHHHH
T ss_pred eecCHHHHHHHHHHH
Confidence 689999887654433
No 5
>PHA02767 hypothetical protein; Provisional
Probab=36.08 E-value=27 Score=31.76 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.2
Q ss_pred ccHHHHHHhhhhhhhhhHHHHHHHHH
Q 007174 80 QSQEQARRKKMSRAQDGILKYMLKMM 105 (614)
Q Consensus 80 ~~~eq~rrKkMsRAQDgiLkyMlKmM 105 (614)
|.+=-.|.|.|..|-|.||||+||..
T Consensus 43 QIk~~~k~~~~EK~~~~I~kYl~~TF 68 (101)
T PHA02767 43 QIKINMKKKEYEKAGMSILKYLVHTF 68 (101)
T ss_pred EEEehhhHHHHHHHHHHHHHHHHHHc
Confidence 44557889999999999999999864
No 6
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=33.90 E-value=24 Score=35.58 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccceeeeccCCCccccCC
Q 007174 100 YMLKMMEVCKAQGFVYGIIPEKGKPVTGA 128 (614)
Q Consensus 100 yMlKmMEvC~aqGFVYGIIpekGkPvsGa 128 (614)
-|+|||. |+ |+=--|||+|.|+
T Consensus 145 EMmk~MG------f~-gFDtTkgkkv~g~ 166 (196)
T KOG3263|consen 145 EMMKIMG------FS-GFDTTKGKKVGGS 166 (196)
T ss_pred HHHHHhC------cC-cccCCCCccccCc
Confidence 4888885 55 6678999999886
No 7
>KOG4215 consensus Hepatocyte nuclear factor 4 and similar steroid hormone receptors [Transcription]
Probab=33.44 E-value=9.1 Score=42.13 Aligned_cols=23 Identities=39% Similarity=0.808 Sum_probs=20.5
Q ss_pred CCCCCCCCccccCCccccCCCCC
Q 007174 411 DYHHGFLDRTSRNNHQLNCPYRN 433 (614)
Q Consensus 411 d~~~GF~DRnsR~nHq~~C~yr~ 433 (614)
|.+=||--|+.|.||||+|+|..
T Consensus 40 dGCKGFFRRSVrk~~~YtCRF~k 62 (432)
T KOG4215|consen 40 DGCKGFFRRSVRKNHQYTCRFNK 62 (432)
T ss_pred CcchHHHHHHHHhcceeeeeccc
Confidence 46789999999999999999973
No 8
>PF07440 Caerin_1: Caerin 1 protein; InterPro: IPR010000 This family consists of several caerin 1 proteins from Litoria species, Australian tree frogs. The caerin 1 peptides are among the most powerful of the broad-spectrum antibiotic amphibian peptides []. These peptides are excreted from amphibian skin, and can interact with and disrupt bacterial membranes, leading to the permeabilisation of the cell membrane. Caerin 1.1 forms a helix-bend-helix sturcture, where both helices are required for activity, as well as the bend region for flexibility.; GO: 0005576 extracellular region
Probab=23.38 E-value=36 Score=24.40 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=12.9
Q ss_pred hhhhhhhhhccCcCH
Q 007174 247 VGVLTAVIKHMSPDI 261 (614)
Q Consensus 247 V~VLtAVIKHmsPd~ 261 (614)
.+||.+|.||+.|..
T Consensus 3 ~~vlgsvakhvlphv 17 (24)
T PF07440_consen 3 FSVLGSVAKHVLPHV 17 (24)
T ss_pred HHHHHHHHHHhcccc
Confidence 579999999999865
No 9
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=22.18 E-value=19 Score=27.51 Aligned_cols=6 Identities=83% Similarity=1.802 Sum_probs=4.4
Q ss_pred ceeeec
Q 007174 113 FVYGII 118 (614)
Q Consensus 113 FVYGII 118 (614)
|+||||
T Consensus 13 ~iYgii 18 (33)
T PF11628_consen 13 FIYGII 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677776
No 10
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=20.65 E-value=91 Score=31.69 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=30.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhcc--ceeeeccCCCcccc
Q 007174 88 KKMSRAQDGILKYMLKMMEVCKAQG--FVYGIIPEKGKPVT 126 (614)
Q Consensus 88 KkMsRAQDgiLkyMlKmMEvC~aqG--FVYGIIpekGkPvs 126 (614)
+.|-.|.+++|++.|+.|.-|..+. |.|| +.|||.=
T Consensus 41 r~r~l~~~~~lr~lls~~l~~~~~~~~~~~~---~~GKP~~ 78 (223)
T COG2091 41 RERFLASRLLLRALLSIALGLDPELLQISYG---ERGKPYL 78 (223)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccceeeEC---CCCCccc
Confidence 6788999999999999999998776 4444 8999963
Done!