Query 007174
Match_columns 614
No_of_seqs 101 out of 124
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 19:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wij_A Ethylene-insensitive3-l 100.0 1.6E-81 5.4E-86 568.2 3.4 138 166-304 2-139 (140)
2 3q7c_A Nucleoprotein; deddh ex 57.2 5.1 0.00017 39.9 2.5 72 219-290 60-172 (243)
3 3mwp_A Nucleoprotein; structur 41.4 12 0.00041 40.7 2.5 162 95-290 284-506 (577)
4 3h3g_B Parathyroid hormone-rel 33.0 18 0.00062 25.0 1.5 14 45-58 3-16 (24)
5 2hac_A T-cell surface glycopro 20.4 14 0.00048 27.2 -1.0 6 113-118 13-18 (33)
6 1g5h_A Mitochondrial DNA polym 19.5 25 0.00085 36.9 0.2 40 101-141 24-78 (454)
7 2d42_A Non-toxic crystal prote 12.6 82 0.0028 31.7 1.9 14 104-117 13-26 (249)
8 1zfd_A SWI5; DNA binding motif 11.8 48 0.0016 20.1 -0.0 25 398-427 2-26 (32)
9 2l58_A Activator of apoptosis 11.7 72 0.0025 23.3 0.9 11 47-57 21-32 (33)
10 2eod_A TNF receptor-associated 11.4 51 0.0017 23.9 -0.0 30 397-432 34-64 (66)
No 1
>1wij_A Ethylene-insensitive3-like 3 protein; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.140.5.1
Probab=100.00 E-value=1.6e-81 Score=568.21 Aligned_cols=138 Identities=71% Similarity=1.232 Sum_probs=126.5
Q ss_pred CCcccCccchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCcchhhhh
Q 007174 166 FGTVVSTPHTLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGPPPYKKPHDLKKAW 245 (614)
Q Consensus 166 ~~~~~~~~h~L~~LqDtTLgsllSaLmqHC~PpQRr~PlekG~~PPWWPtG~E~WW~~~g~~~~~gpPPYkkPhdLkKaw 245 (614)
+++.++++|+|+||||||||||||||||||+|||||||||||+||||||||+|+||+++|++++|+ |||||||||||||
T Consensus 2 ~~~~~~~~h~L~~Lqd~TLgsllsaLmqhC~PPQR~~Plekg~~PPWWPtG~E~WW~~lGl~~~~~-PPYkkPhdLkKaw 80 (140)
T 1wij_A 2 SSGSSGSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGNEEWWVKLGLPKSQS-PPYRKPHDLKKMW 80 (140)
T ss_dssp ------CCCCSTTSCHHHHHHHHHHHSSSSSSCTTSCCTTTCCHHHHCCCSCCHHHHHHTCCTTCC-CCCCCGGGCCHHH
T ss_pred CccccccHHHHHHHHHHhHHHHHHHHHhhCCCchhcCCCCCCCCcCCCCCCCchhHHhcCCCCCCC-CCCCCchhhhHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred hhhhhhhhhhccCcCHHHHHHHHHhhccccchhhHHhHhHHHHHHhhHHHhhhhcCCCC
Q 007174 246 KVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALSRKLYPDS 304 (614)
Q Consensus 246 KV~VLtAVIKHmsPd~~kir~lVrqSkclqdKmTakEs~tWl~vl~qEE~l~r~l~p~~ 304 (614)
||+|||||||||||||+|||+|||||||||||||||||+||++||||||+++|+++|+.
T Consensus 81 KV~VLtAVIKHmsPd~~kir~lVrqSk~lqdKmTakEs~~W~~vl~~Ee~~~~~~~p~~ 139 (140)
T 1wij_A 81 KVGVLTAVINHMLPDIAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQSGPSS 139 (140)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTTCCSHHHHHHHHHHTTTTTCSCC-----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 2
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=57.24 E-value=5.1 Score=39.89 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=50.4
Q ss_pred CcccccCCCCCCCC-----C-------CCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------H
Q 007174 219 EWWPELGLPKDQGP-----P-------PYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------A 262 (614)
Q Consensus 219 ~WW~~~g~~~~~gp-----P-------PYkkPhdLkKaw-----------------KV~VLtAVIKHmsPd~-------~ 262 (614)
.|=.=.|-|.+++- | =||+|||.|-.= .-|+++|||+|+-++. +
T Consensus 60 tWiDIEG~p~DPVElAiyQP~sg~YIHcyR~P~D~K~FK~~SKySHGillkDl~~aqPGL~S~vi~~LP~nMVlT~QGsD 139 (243)
T 3q7c_A 60 TWMDIEGRPEDPVEIALYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSD 139 (243)
T ss_dssp CEEEEESCTTSCSEEEEEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCTTHHHHHHHHSCTTCEEEESSHH
T ss_pred eEEecCCCCCCCeEEEEeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChH
Confidence 45555577766531 1 399999986431 2489999999999986 8
Q ss_pred HHHHHHHh-----hccccchhhHHhHhHHHHHH
Q 007174 263 KIRKLVRQ-----SKCLQDKMTAKESATWLAII 290 (614)
Q Consensus 263 kir~lVrq-----SkclqdKmTakEs~tWl~vl 290 (614)
.||+|.-. =|-+-=|||+.+|......|
T Consensus 140 DIrkLld~hGRrDiKlIDV~lt~eqaR~FEd~V 172 (243)
T 3q7c_A 140 DIRKLLESQGRKDIKLIDIALSKTDSRKYENAV 172 (243)
T ss_dssp HHHHHHHHTTCTTSEEEECCCCHHHHTTTHHHH
T ss_pred HHHHHHHhcCCccceEEEeecCHHHHHHHHHHH
Confidence 89999843 35555689999887665444
No 3
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=41.36 E-value=12 Score=40.73 Aligned_cols=162 Identities=27% Similarity=0.395 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHhhccceeeecc----------------CCCccccCCChhh--HHHHhhhhcccccchhhhhhhhhc
Q 007174 95 DGILKYMLKMMEVCKAQGFVYGIIP----------------EKGKPVTGASDNL--RAWWKEKVRFDRNGPAAIAKYQAD 156 (614)
Q Consensus 95 DgiLkyMlKmMEvC~aqGFVYGIIp----------------ekGkPvsGaSdnl--R~WWKekVrFDrngPaAiaky~~~ 156 (614)
++|||-+|+ |=++-|-.-.-.| -.|=|-.||--.| |+|=---|-|+...+..
T Consensus 284 ~~iiK~~L~---vK~~e~MFVs~~PG~RNPYENlLYKlCLSGeGWPYI~SRsqI~GRaWdNT~vdl~~~~~~~------- 353 (577)
T 3mwp_A 284 DGILKSILK---VKKALGMFISDTPGERNPYENILYKICLSGDGWPYIASRTSITGRAWENTVVDLESDGKPQ------- 353 (577)
T ss_dssp HHHHHHHHH---HHHHHTCCCCSCCSSCCHHHHHHHHHHHCSSBCTTTSBCTTCCSCHHHHEEECC--------------
T ss_pred HHHHHHHHH---HHHhcCceecCCCCCCChHHHHHHHHhhCCCCCcceeeccccccccccCceEecCCCCCCC-------
Confidence 467777765 4455554434443 3577777776666 89988888888776322
Q ss_pred cCCCCCCCCCC--cccCccchhhhcchhhhhhHHHHhhhcCCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCC--
Q 007174 157 HAIPGKNEDFG--TVVSTPHTLQELQDTTLGSLLSALMQHCNPPQRRFPLEKGVAPPWWPTGTEEWWPELGLPKDQGP-- 232 (614)
Q Consensus 157 ~~~~~~~~~~~--~~~~~~h~L~~LqDtTLgsllSaLmqHC~PpQRr~PlekG~~PPWWPtG~E~WW~~~g~~~~~gp-- 232 (614)
..|..+++-. ..++ ...|.+.|-. +|...|+.-+|-- ..|-.-.|-|.|+.-
T Consensus 354 -~~p~rnG~~~~~~~~~-l~~L~~~qe~----~~k~~~~~ldp~~------------------ttWiDIEG~p~DPVE~A 409 (577)
T 3mwp_A 354 -KADSNNSSKSLQSAGF-TAGLTYSQLM----TLKDAMLQLDPNA------------------KTWMDIEGRPEDPVEIA 409 (577)
T ss_dssp --------------------CCCHHHHH----HHHHHGGGSCTTS------------------CEEEEEESCTTSCSEEE
T ss_pred -CCCccCcccccccCCc-ccCCCHHHHH----HHHHHHHhCCCCC------------------CeEEecCCCCCCCeEEE
Confidence 1233333211 1111 2344444433 4555666666632 345555566666531
Q ss_pred ----------CCCCCCcchhhhh-----------------hhhhhhhhhhccCcCH-------HHHHHHHHh-----hcc
Q 007174 233 ----------PPYKKPHDLKKAW-----------------KVGVLTAVIKHMSPDI-------AKIRKLVRQ-----SKC 273 (614)
Q Consensus 233 ----------PPYkkPhdLkKaw-----------------KV~VLtAVIKHmsPd~-------~kir~lVrq-----Skc 273 (614)
-=|++|||.|-.= .-|+++|||+|+-++. +.||+|.-. -|-
T Consensus 410 iyQP~~g~YiHcyR~P~D~K~FK~~SkysHGillkDl~~aqPGL~S~vi~~LP~~mV~T~QGsdDI~kLld~hGR~DiK~ 489 (577)
T 3mwp_A 410 LYQPSSGCYIHFFREPTDLKQFKQDAKYSHGIDVTDLFATQPGLTSAVIDALPRNMVITCQGSDDIRKLLESQGRKDIKL 489 (577)
T ss_dssp EEETTTTEEEEEECCCSCHHHHHHHHHHTTCBCGGGGGGBCTTHHHHHHHHSCTTCEEEESSHHHHHHHHHHTTCTTCEE
T ss_pred EeccCCCcEEEEecCCcchhhhcccCccccceehhhhhhcCCchHHHHHHhCCcCcEEEeeChHHHHHHHHhcCCccceE
Confidence 1399999986431 2489999999999886 889999843 355
Q ss_pred ccchhhHHhHhHHHHHH
Q 007174 274 LQDKMTAKESATWLAII 290 (614)
Q Consensus 274 lqdKmTakEs~tWl~vl 290 (614)
+-=|||+.+|......|
T Consensus 490 iDV~lt~eqaR~fEd~V 506 (577)
T 3mwp_A 490 IDIALSKTDSRKYENAV 506 (577)
T ss_dssp EECCCCHHHHTTTHHHH
T ss_pred EEeecCHHHHHHHHHHH
Confidence 55689999887664444
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=33.04 E-value=18 Score=25.04 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=10.7
Q ss_pred CHHHHHHhhhhhhH
Q 007174 45 DVDELERRMWRDRL 58 (614)
Q Consensus 45 ~~~eL~~rmWkDr~ 58 (614)
.+.||+||||-..+
T Consensus 3 s~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 3 SIQDLRRRFFLHHL 16 (26)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 46899999996543
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=20.43 E-value=14 Score=27.22 Aligned_cols=6 Identities=67% Similarity=1.752 Sum_probs=4.3
Q ss_pred ceeeec
Q 007174 113 FVYGII 118 (614)
Q Consensus 113 FVYGII 118 (614)
|+||||
T Consensus 13 ~iYgii 18 (33)
T 2hac_A 13 FIYGVI 18 (33)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677776
No 6
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=19.49 E-value=25 Score=36.89 Aligned_cols=40 Identities=23% Similarity=0.642 Sum_probs=27.1
Q ss_pred HHHHHHHHhhccceee---eccCCCccccCCC-----------hhhHH-HHhhhhc
Q 007174 101 MLKMMEVCKAQGFVYG---IIPEKGKPVTGAS-----------DNLRA-WWKEKVR 141 (614)
Q Consensus 101 MlKmMEvC~aqGFVYG---IIpekGkPvsGaS-----------dnlR~-WWKekVr 141 (614)
|-|+++.|+.+|||+. |-|-+ -+|+|.- .||.. ||++.+.
T Consensus 24 ~~~~~~l~krrgf~~~s~eiy~g~-~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~ 78 (454)
T 1g5h_A 24 REALVDLCRRRHFLSGTPQQLSTA-ALLSGCHARFGPLGVELRKNLASQWWSSMVV 78 (454)
T ss_dssp -CHHHHHHHHTTSBCCCGGGGSHH-HHHHCCSCCBCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCccccchhcccC-CCCCcceeeeCchHHHHHHHHHHHHHHHHhh
Confidence 6789999999999763 22211 3677755 48877 8887554
No 7
>2d42_A Non-toxic crystal protein; parasporin, bacterial toxin, beta-pore-forming toxin, parasporal inclusion, hinge-bending motion; 2.07A {Bacillus thuringiensis}
Probab=12.62 E-value=82 Score=31.67 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=9.4
Q ss_pred HHHHHhhccceeee
Q 007174 104 MMEVCKAQGFVYGI 117 (614)
Q Consensus 104 mMEvC~aqGFVYGI 117 (614)
|||+|+|+|+-||.
T Consensus 13 ~~~~~~~~~~ty~~ 26 (249)
T 2d42_A 13 GMQYANSHQYTYGS 26 (249)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHhhhccceecc
Confidence 46777777777763
No 8
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=11.82 E-value=48 Score=20.09 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=17.2
Q ss_pred cccccCCCCCCCCCCCCCCCCccccCCccc
Q 007174 398 KIYTCEFTQCPYNDYHHGFLDRTSRNNHQL 427 (614)
Q Consensus 398 kvYTCen~qCP~Sd~~~GF~DRnsR~nHq~ 427 (614)
+.|.|....|. ..|..+..+..|+.
T Consensus 2 k~~~C~~~~C~-----k~f~~~~~L~~H~~ 26 (32)
T 1zfd_A 2 RPYSCDHPGCD-----KAFVRNHDLIRHKK 26 (32)
T ss_dssp CSBCCCCTTCC-----CCBSSSHHHHHHHG
T ss_pred CCCcCcCCCCC-----CccCCHHHHHHHHH
Confidence 46888766774 55777777777764
No 9
>2l58_A Activator of apoptosis harakiri; BCL-2, BH3-only, intrinsically disorder protein; NMR {Synthetic}
Probab=11.71 E-value=72 Score=23.29 Aligned_cols=11 Identities=73% Similarity=1.356 Sum_probs=7.1
Q ss_pred HHHH-Hhhhhhh
Q 007174 47 DELE-RRMWRDR 57 (614)
Q Consensus 47 ~eL~-~rmWkDr 57 (614)
|||. |-|||.|
T Consensus 21 del~~rtmwrrr 32 (33)
T 2l58_A 21 DELHQRTMWRRR 32 (33)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhc
Confidence 4564 4599865
No 10
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=11.38 E-value=51 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=22.7
Q ss_pred CcccccCCCCCCCCCCCCCCCCccccCCcccc-CCCC
Q 007174 397 QKIYTCEFTQCPYNDYHHGFLDRTSRNNHQLN-CPYR 432 (614)
Q Consensus 397 qkvYTCen~qCP~Sd~~~GF~DRnsR~nHq~~-C~yr 432 (614)
.+.|.|.+ .|. ..|..+..+..|+.. |+.+
T Consensus 34 ~~p~~C~~-~C~-----k~f~~~~~L~~H~~~hc~~~ 64 (66)
T 2eod_A 34 RLPVACPN-QCG-----VGTVAREDLPGHLKDSCNTA 64 (66)
T ss_dssp SSEEECTT-CCS-----CCEEETTTHHHHHHTTSSSC
T ss_pred CcCccCCc-ccC-----cccccHHHHHHHHHhhcccC
Confidence 46899976 664 468888888899875 8765
Done!