Query 007176
Match_columns 614
No_of_seqs 168 out of 291
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rq5_A Protein jumonji; develo 99.9 5.7E-23 2E-27 185.5 6.7 91 439-542 12-103 (121)
2 1ig6_A MRF-2, modulator recogn 99.9 5.6E-23 1.9E-27 180.0 4.1 89 439-540 3-92 (107)
3 2jxj_A Histone demethylase jar 99.9 7.4E-23 2.5E-27 175.7 4.2 92 434-540 2-94 (96)
4 1c20_A DEAD ringer protein; DN 99.8 4.5E-22 1.6E-26 179.6 5.8 91 438-541 21-112 (128)
5 2eqy_A RBP2 like, jumonji, at 99.8 7.2E-22 2.5E-26 177.5 7.0 92 438-544 12-104 (122)
6 2jrz_A Histone demethylase jar 99.8 6.1E-22 2.1E-26 176.7 6.1 92 437-543 9-101 (117)
7 2kk0_A AT-rich interactive dom 99.8 1.3E-21 4.5E-26 180.5 6.7 89 440-541 35-124 (145)
8 2cxy_A BAF250B subunit, HBAF25 99.8 1.5E-21 5E-26 175.8 6.8 89 438-540 20-109 (125)
9 2lm1_A Lysine-specific demethy 99.8 2.1E-21 7.1E-26 169.7 5.3 88 439-541 15-103 (107)
10 1kkx_A Transcription regulator 99.8 7.2E-21 2.5E-25 171.8 6.1 88 435-540 14-102 (123)
11 2li6_A SWI/SNF chromatin-remod 99.8 1.8E-20 6.2E-25 166.8 4.9 85 438-540 18-103 (116)
12 2k16_A Transcription initiatio 99.0 5.6E-11 1.9E-15 97.6 2.9 56 544-606 17-73 (75)
13 2e6r_A Jumonji/ARID domain-con 98.8 1.1E-09 3.6E-14 94.4 3.0 57 543-606 14-71 (92)
14 1we9_A PHD finger family prote 98.8 1.2E-09 4.1E-14 87.2 2.8 52 543-600 4-57 (64)
15 1wep_A PHF8; structural genomi 98.8 1.5E-09 5.1E-14 90.5 3.4 62 544-613 11-79 (79)
16 1wen_A Inhibitor of growth fam 98.8 3.2E-09 1.1E-13 87.8 5.0 52 544-605 15-69 (71)
17 1xwh_A Autoimmune regulator; P 98.8 4.1E-09 1.4E-13 85.4 4.2 58 543-609 6-63 (66)
18 1f62_A Transcription factor WS 98.8 2.9E-09 9.8E-14 81.7 2.8 47 547-600 2-49 (51)
19 2vpb_A Hpygo1, pygopus homolog 98.7 9.2E-10 3.2E-14 89.7 -1.1 56 543-599 6-64 (65)
20 1weu_A Inhibitor of growth fam 98.7 8.7E-09 3E-13 89.3 4.6 49 544-602 35-86 (91)
21 2jmi_A Protein YNG1, ING1 homo 98.7 6.2E-09 2.1E-13 90.1 2.7 51 543-603 24-78 (90)
22 2puy_A PHD finger protein 21A; 98.7 5.5E-09 1.9E-13 82.9 2.2 53 544-605 4-56 (60)
23 2yql_A PHD finger protein 21A; 98.6 1E-08 3.5E-13 80.5 3.1 50 542-600 6-55 (56)
24 1mm2_A MI2-beta; PHD, zinc fin 98.6 2.2E-08 7.6E-13 80.1 4.9 54 541-603 5-58 (61)
25 2xb1_A Pygopus homolog 2, B-ce 98.6 4E-09 1.4E-13 92.8 0.3 57 545-602 3-62 (105)
26 2lri_C Autoimmune regulator; Z 98.6 1.6E-08 5.5E-13 82.6 3.8 50 544-602 11-60 (66)
27 2l5u_A Chromodomain-helicase-D 98.6 1.6E-08 5.4E-13 81.0 3.5 52 542-602 8-59 (61)
28 2yt5_A Metal-response element- 98.6 1.6E-08 5.4E-13 81.0 2.9 58 543-606 4-66 (66)
29 2lv9_A Histone-lysine N-methyl 98.6 2.8E-08 9.7E-13 86.3 4.4 49 544-601 27-76 (98)
30 2g6q_A Inhibitor of growth pro 98.6 1.1E-08 3.6E-13 82.7 1.1 47 544-600 10-59 (62)
31 1wem_A Death associated transc 98.6 7.1E-09 2.4E-13 85.6 -0.1 55 541-601 12-70 (76)
32 2kgg_A Histone demethylase jar 98.6 1.4E-08 4.9E-13 78.8 1.6 45 548-599 5-52 (52)
33 3o70_A PHD finger protein 13; 98.6 2.4E-08 8.3E-13 81.8 3.0 49 543-600 17-66 (68)
34 3c6w_A P28ING5, inhibitor of g 98.5 1.3E-08 4.4E-13 81.4 1.1 47 544-600 8-57 (59)
35 3asl_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 81.2 3.6 49 547-601 20-69 (70)
36 1x4i_A Inhibitor of growth pro 98.5 2E-08 6.7E-13 82.9 2.0 50 545-604 6-58 (70)
37 2vnf_A ING 4, P29ING4, inhibit 98.5 1.5E-08 5.3E-13 81.0 1.1 50 541-600 6-58 (60)
38 1wee_A PHD finger family prote 98.5 3.1E-08 1.1E-12 81.2 2.2 51 542-600 13-65 (72)
39 3lqh_A Histone-lysine N-methyl 98.5 2.5E-08 8.4E-13 95.7 1.6 55 545-601 2-63 (183)
40 3u5n_A E3 ubiquitin-protein li 98.5 5.5E-08 1.9E-12 93.3 4.0 52 541-601 3-54 (207)
41 1wev_A Riken cDNA 1110020M19; 98.5 4.6E-08 1.6E-12 83.5 2.3 56 545-603 16-74 (88)
42 1fp0_A KAP-1 corepressor; PHD 98.5 1.4E-07 5E-12 81.4 5.3 51 543-602 23-73 (88)
43 1wew_A DNA-binding family prot 98.5 4.1E-08 1.4E-12 81.9 1.7 52 544-601 15-72 (78)
44 3kqi_A GRC5, PHD finger protei 98.5 2.7E-08 9.2E-13 82.3 0.6 50 546-602 11-62 (75)
45 2ku3_A Bromodomain-containing 98.4 3.3E-08 1.1E-12 81.8 1.1 52 542-602 13-67 (71)
46 2e6s_A E3 ubiquitin-protein li 98.4 1.3E-07 4.6E-12 79.3 4.5 48 547-600 28-76 (77)
47 3o36_A Transcription intermedi 98.4 1.2E-07 4E-12 89.2 4.6 50 544-602 3-52 (184)
48 2ri7_A Nucleosome-remodeling f 98.4 2.1E-08 7.1E-13 93.1 -1.6 52 543-602 6-60 (174)
49 2l43_A N-teminal domain from h 98.3 6.8E-08 2.3E-12 82.7 0.5 51 544-603 24-77 (88)
50 3shb_A E3 ubiquitin-protein li 98.3 2.6E-07 9E-12 77.7 3.6 48 547-600 28-76 (77)
51 2rsd_A E3 SUMO-protein ligase 98.3 1.9E-07 6.4E-12 76.0 2.6 50 545-600 10-64 (68)
52 3o7a_A PHD finger protein 13 v 98.3 1.6E-07 5.5E-12 72.7 1.9 43 550-600 8-51 (52)
53 2kwj_A Zinc finger protein DPF 98.3 1.9E-07 6.7E-12 82.6 2.3 52 547-605 60-112 (114)
54 3ask_A E3 ubiquitin-protein li 98.3 2.8E-07 9.4E-12 91.3 3.6 50 546-601 175-225 (226)
55 3pur_A Lysine-specific demethy 98.3 3.3E-07 1.1E-11 99.9 3.7 48 547-601 44-94 (528)
56 2ro1_A Transcription intermedi 98.2 7.8E-07 2.7E-11 84.9 4.4 49 545-602 2-50 (189)
57 4gne_A Histone-lysine N-methyl 98.1 1.3E-06 4.4E-11 77.7 4.2 56 541-607 11-68 (107)
58 3kv5_D JMJC domain-containing 98.1 3.9E-07 1.3E-11 98.4 0.2 49 545-601 37-88 (488)
59 3v43_A Histone acetyltransfera 98.1 2.2E-06 7.5E-11 75.5 4.3 47 547-600 63-111 (112)
60 2ysm_A Myeloid/lymphoid or mix 98.1 1.4E-06 4.7E-11 76.1 2.6 48 547-601 56-104 (111)
61 3kv4_A PHD finger protein 8; e 97.8 1.8E-06 6.1E-11 92.6 -1.7 46 550-602 9-57 (447)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 4.4E-06 1.5E-10 72.3 1.0 41 558-603 1-46 (140)
63 2ysm_A Myeloid/lymphoid or mix 97.4 0.00013 4.5E-09 63.6 4.7 49 544-599 6-55 (111)
64 4bbq_A Lysine-specific demethy 97.2 0.00018 6E-09 63.0 3.0 43 556-602 72-115 (117)
65 2lbm_A Transcriptional regulat 96.6 0.00089 3E-08 62.3 3.1 71 522-600 43-116 (142)
66 2kwj_A Zinc finger protein DPF 96.5 0.00082 2.8E-08 59.3 2.0 50 546-599 2-59 (114)
67 3v43_A Histone acetyltransfera 96.5 0.00065 2.2E-08 59.7 1.2 56 546-605 6-69 (112)
68 3ql9_A Transcriptional regulat 96.0 0.001 3.6E-08 61.0 -0.0 71 522-600 37-110 (129)
69 1wil_A KIAA1045 protein; ring 95.9 0.002 7E-08 55.8 1.2 55 545-600 15-75 (89)
70 3rsn_A SET1/ASH2 histone methy 91.6 0.14 4.7E-06 49.3 4.2 46 551-600 10-58 (177)
71 2d8s_A Cellular modulator of i 74.1 1.5 5E-05 36.5 2.2 61 544-613 14-80 (80)
72 1iym_A EL5; ring-H2 finger, ub 65.1 4 0.00014 30.0 2.6 46 545-601 5-52 (55)
73 1x41_A Transcriptional adaptor 62.7 6.9 0.00024 30.5 3.7 39 482-535 18-56 (60)
74 1x4j_A Ring finger protein 38; 61.8 1.2 4E-05 35.2 -0.9 49 542-601 20-69 (75)
75 1v87_A Deltex protein 2; ring- 61.8 3.3 0.00011 35.0 1.9 56 545-606 25-96 (114)
76 2ct0_A Non-SMC element 1 homol 60.5 4.6 0.00016 33.5 2.4 47 545-601 15-61 (74)
77 2kiz_A E3 ubiquitin-protein li 58.9 2.8 9.5E-05 32.3 0.8 51 542-603 11-62 (69)
78 1dx8_A Rubredoxin; electron tr 58.7 7.4 0.00025 32.2 3.4 36 573-614 26-63 (70)
79 1gvd_A MYB proto-oncogene prot 57.2 7.8 0.00027 29.1 3.1 39 482-535 13-51 (52)
80 1guu_A C-MYB, MYB proto-oncoge 53.8 11 0.00039 28.1 3.5 39 482-535 13-51 (52)
81 2ect_A Ring finger protein 126 53.2 12 0.0004 29.4 3.6 51 545-606 15-66 (78)
82 2kn9_A Rubredoxin; metalloprot 52.1 8.8 0.0003 32.8 2.9 38 559-601 27-69 (81)
83 3nw0_A Non-structural maintena 51.3 5.5 0.00019 39.2 1.7 46 545-601 180-226 (238)
84 2dim_A Cell division cycle 5-l 49.4 15 0.0005 29.3 3.6 39 482-535 19-57 (70)
85 2d9a_A B-MYB, MYB-related prot 49.3 15 0.00052 28.3 3.6 39 482-535 18-56 (60)
86 3a1b_A DNA (cytosine-5)-methyl 49.1 4.4 0.00015 38.5 0.6 75 520-601 57-134 (159)
87 2v3b_B Rubredoxin 2, rubredoxi 47.2 11 0.00039 29.7 2.6 36 561-601 5-45 (55)
88 1s24_A Rubredoxin 2; electron 46.2 10 0.00035 32.8 2.4 24 573-601 54-77 (87)
89 2yum_A ZZZ3 protein, zinc fing 45.7 16 0.00053 29.4 3.3 49 481-539 17-65 (75)
90 2elk_A SPCC24B10.08C protein; 45.6 26 0.00088 27.1 4.4 39 482-534 19-57 (58)
91 2ysl_A Tripartite motif-contai 45.4 7.3 0.00025 30.1 1.2 47 545-601 20-66 (73)
92 1v5n_A PDI-like hypothetical p 45.3 10 0.00034 32.2 2.2 33 545-577 47-79 (89)
93 2pv0_B DNA (cytosine-5)-methyl 45.2 6.2 0.00021 42.0 1.0 76 519-601 70-148 (386)
94 1ity_A TRF1; helix-turn-helix, 44.1 26 0.0009 27.8 4.4 42 482-536 20-61 (69)
95 1yk4_A Rubredoxin, RD; electro 43.9 15 0.0005 28.8 2.7 36 561-601 4-44 (52)
96 2ep4_A Ring finger protein 24; 43.9 9.7 0.00033 29.6 1.8 48 544-603 14-63 (74)
97 1vyx_A ORF K3, K3RING; zinc-bi 43.5 2.6 8.7E-05 33.3 -1.7 52 541-601 2-56 (60)
98 2ecm_A Ring finger and CHY zin 43.4 7.6 0.00026 28.3 1.0 47 544-601 4-52 (55)
99 3k1l_B Fancl; UBC, ring, RWD, 42.9 23 0.00078 37.8 4.8 53 544-600 307-369 (381)
100 2lo0_A Uncharacterized protein 41.4 13 0.00045 31.5 2.3 21 436-456 35-55 (75)
101 1e8j_A Rubredoxin; iron-sulfur 40.6 22 0.00075 27.8 3.3 23 574-601 23-45 (52)
102 2l7p_A Histone-lysine N-methyl 39.7 9.3 0.00032 33.8 1.1 16 556-571 25-40 (100)
103 2cu7_A KIAA1915 protein; nucle 39.7 30 0.001 27.7 4.1 42 482-539 19-60 (72)
104 4rxn_A Rubredoxin; electron tr 37.2 21 0.0007 28.3 2.7 36 561-601 5-45 (54)
105 1bax_A M-PMV MA, M-PMV matrix 36.1 17 0.00058 31.9 2.2 55 440-512 8-66 (94)
106 2egp_A Tripartite motif-contai 34.4 17 0.00059 28.3 1.8 51 545-602 12-63 (79)
107 2yus_A SWI/SNF-related matrix- 30.4 24 0.00084 29.3 2.2 36 481-532 27-62 (79)
108 2ysj_A Tripartite motif-contai 30.2 13 0.00045 28.0 0.5 44 545-598 20-63 (63)
109 2l0b_A E3 ubiquitin-protein li 28.2 13 0.00043 30.7 0.0 47 544-601 39-86 (91)
110 2ecv_A Tripartite motif-contai 27.7 9.4 0.00032 29.8 -0.8 50 545-602 19-69 (85)
111 6rxn_A Rubredoxin; electron tr 27.6 33 0.0011 26.3 2.3 17 581-601 23-39 (46)
112 4a0k_B E3 ubiquitin-protein li 27.6 15 0.0005 32.8 0.4 28 563-601 82-109 (117)
113 2e61_A Zinc finger CW-type PWW 27.5 24 0.00083 29.1 1.6 16 556-571 15-32 (69)
114 2ct2_A Tripartite motif protei 27.2 14 0.00046 29.4 0.1 48 545-601 15-65 (88)
115 1w0t_A Telomeric repeat bindin 27.0 83 0.0029 23.6 4.5 39 482-533 12-50 (53)
116 4bbq_A Lysine-specific demethy 26.0 15 0.00051 31.7 0.1 26 547-578 9-34 (117)
117 2d8t_A Dactylidin, ring finger 24.3 27 0.00093 27.0 1.3 46 543-601 13-58 (71)
118 2din_A Cell division cycle 5-l 23.9 80 0.0027 24.6 4.0 42 482-540 19-60 (66)
119 1bor_A Transcription factor PM 23.1 53 0.0018 24.6 2.7 44 543-603 4-48 (56)
120 2k9n_A MYB24; R2R3 domain, DNA 22.7 63 0.0022 27.5 3.5 39 482-535 11-49 (107)
121 3l11_A E3 ubiquitin-protein li 22.4 40 0.0014 28.4 2.1 45 545-601 15-59 (115)
122 2ecj_A Tripartite motif-contai 22.4 29 0.001 25.3 1.1 43 545-598 15-58 (58)
123 1gv2_A C-MYB, MYB proto-oncoge 22.2 56 0.0019 27.5 3.0 40 482-536 14-53 (105)
124 4gne_A Histone-lysine N-methyl 20.7 63 0.0022 28.5 3.1 29 547-578 60-88 (107)
125 2ecl_A Ring-box protein 2; RNF 20.7 32 0.0011 27.7 1.1 46 545-601 15-73 (81)
126 3dpl_R Ring-box protein 1; ubi 20.7 16 0.00055 31.7 -0.7 31 560-601 68-98 (106)
127 2lk0_A RNA-binding protein 5; 20.0 44 0.0015 23.5 1.5 15 592-606 5-19 (32)
No 1
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=99.87 E-value=5.7e-23 Score=185.53 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCCc
Q 007176 439 SEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNR 517 (614)
Q Consensus 439 ~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~t 517 (614)
..++||++|.+||++||+|+. +.|+|+|++||||+||+.|+++|||++|++ ++|+ +|+..|+ ++.+
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~---------~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~-~Va~~lg---~p~~ 78 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMD---------ELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWN-KLADMLR---IPKT 78 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS---------SCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHH-HHHHHTC---CCTT
T ss_pred CcHHHHHHHHHHHHHcCCCCC---------CCCcCCCEeccHHHHHHHHHHcCcHHHhcccCcHH-HHHHHhC---CCCC
Confidence 478999999999999999964 257999999999999999999999999955 5899 9999998 6778
Q ss_pred cccHHHHHHHHHHHhhhhhhccccc
Q 007176 518 MTGVGNTLKRHYETYLLEYELAHDD 542 (614)
Q Consensus 518 ~Tsag~~LK~hYERyLleYE~ahdD 542 (614)
+|++++.||+||+|||++||...++
T Consensus 79 ~~sa~~~Lr~~Y~k~L~~YE~~~~~ 103 (121)
T 2rq5_A 79 AQDRLAKLQEAYCQYLLSYDSLSPE 103 (121)
T ss_dssp CSSHHHHHHHHHHTTHHHHHHCCHH
T ss_pred cCcHHHHHHHHHHHHhHHHHCcCHH
Confidence 8999999999999999999997654
No 2
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=99.86 E-value=5.6e-23 Score=180.01 Aligned_cols=89 Identities=21% Similarity=0.424 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCCc
Q 007176 439 SEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNR 517 (614)
Q Consensus 439 ~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~t 517 (614)
++++||++|++||++||+++.. .|+|+|++||||+||++|+++|||++|++ ++|+ +|++.|+ ++.+
T Consensus 3 e~~~Fl~~L~~F~~~rg~~~~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~~~ 69 (107)
T 1ig6_A 3 DEQAFLVALYKYMKERKTPIER---------IPYLGFKQINLWTMFQAAQKLGGYETITARRQWK-HIYDELG---GNPG 69 (107)
T ss_dssp HHHHHHHHHHHHHHTTTCCGGG---------CCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHH-HHHHHHT---CCTT
T ss_pred hHHHHHHHHHHHHHHcCCCCCc---------CceECCEeecHHHHHHHHHHhcCHHHhcccCcHH-HHHHHhC---CCCC
Confidence 5789999999999999999633 57999999999999999999999999965 6899 9999999 5667
Q ss_pred cccHHHHHHHHHHHhhhhhhccc
Q 007176 518 MTGVGNTLKRHYETYLLEYELAH 540 (614)
Q Consensus 518 ~Tsag~~LK~hYERyLleYE~ah 540 (614)
+|++++.||++|+|||++||...
T Consensus 70 ~~s~~~~Lk~~Y~k~L~~yE~~~ 92 (107)
T 1ig6_A 70 STSAATCTRRHYERLILPYERFI 92 (107)
T ss_dssp CTTTTTTHHHHHHHHTTTTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999854
No 3
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=99.86 E-value=7.4e-23 Score=175.72 Aligned_cols=92 Identities=34% Similarity=0.554 Sum_probs=80.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCC
Q 007176 434 PIQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNH 512 (614)
Q Consensus 434 Pl~~~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~ 512 (614)
|...+.+++|+++|++||++||+++. .|+++||+||||+||++|+++|||++|++ ++|+ +|++.|+
T Consensus 2 p~~~r~~~~F~~~L~~F~~~~g~~l~----------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~v~~~lg-- 68 (96)
T 2jxj_A 2 PLGSRVRLDFLDQLAKFWELQGSTLK----------IPVVERKILDLYALSKIVASKGGFEMVTKEKKWS-KVGSRLG-- 68 (96)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTCCCC----------CCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHH-HHHHHHT--
T ss_pred chhhHHHHHHHHHHHHHHHHcCCCCC----------CCcCCCEeccHHHHHHHHHHcCCHHHHccCCcHH-HHHHHhC--
Confidence 55667799999999999999999962 36999999999999999999999999965 6899 9999998
Q ss_pred cCCCccccHHHHHHHHHHHhhhhhhccc
Q 007176 513 TLTNRMTGVGNTLKRHYETYLLEYELAH 540 (614)
Q Consensus 513 ~~p~t~Tsag~~LK~hYERyLleYE~ah 540 (614)
++.. +++++.||++|+|||++||...
T Consensus 69 -~~~~-~~~~~~Lk~~Y~k~L~~yE~~~ 94 (96)
T 2jxj_A 69 -YLPG-KGTGSLLKSHYERILYPYELFQ 94 (96)
T ss_dssp -CCSC-SCHHHHHHHHHTTTTHHHHHHH
T ss_pred -CCCc-CcHHHHHHHHHHHHHHHHHHHh
Confidence 4433 3789999999999999999753
No 4
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=99.85 E-value=4.5e-22 Score=179.56 Aligned_cols=91 Identities=30% Similarity=0.521 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCC
Q 007176 438 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 516 (614)
Q Consensus 438 ~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~ 516 (614)
.++++|+++|++||++||+++. +.|+++||+||||+||++|+++|||++|++ ++|+ +|+..|+ ++.
T Consensus 21 ~~~~~Fl~~L~~F~~~rG~~l~---------~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~-~Va~~lg---~~~ 87 (128)
T 1c20_A 21 PKRKEFLDDLFSFMQKRGTPIN---------RLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQ-EIIKGLH---LPS 87 (128)
T ss_dssp HHHHHHHHHHHHHHTTTSSCSS---------CCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHH-HHHHHTC---CCS
T ss_pred hHHHHHHHHHHHHHHHcCCCCc---------cceeECCEeecHHHHHHHHHHhcCHHHcCccCcHH-HHHHHhC---CCC
Confidence 4689999999999999999953 257999999999999999999999999965 6899 9999998 666
Q ss_pred ccccHHHHHHHHHHHhhhhhhcccc
Q 007176 517 RMTGVGNTLKRHYETYLLEYELAHD 541 (614)
Q Consensus 517 t~Tsag~~LK~hYERyLleYE~ahd 541 (614)
++|++++.||++|+|||++||....
T Consensus 88 ~~~sa~~~Lk~~Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 88 SITSAAFTLRTQYMKYLYPYECEKK 112 (128)
T ss_dssp SCCSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999774
No 5
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=7.2e-22 Score=177.51 Aligned_cols=92 Identities=29% Similarity=0.453 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCC
Q 007176 438 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 516 (614)
Q Consensus 438 ~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~ 516 (614)
+.++.|+++|++||++||+++. .|+|+||+||||+||++|+++|||++|++ ++|+ +|++.|+ ++.
T Consensus 12 ~~~~~Fl~~L~~F~~~rG~~l~----------~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~-~V~~~lg---~~~ 77 (122)
T 2eqy_A 12 RVKLNFLDQIAKYWELQGSTLK----------IPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWT-KIATKMG---FAP 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCC----------CCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHH-HHHHHTT---CCS
T ss_pred hHHHHHHHHHHHHHHHcCCCCC----------CCeECCEeccHHHHHHHHHHccCHHHHcCCCcHH-HHHHHhC---CCC
Confidence 4578999999999999999952 46999999999999999999999999954 5899 9999998 443
Q ss_pred ccccHHHHHHHHHHHhhhhhhccccccc
Q 007176 517 RMTGVGNTLKRHYETYLLEYELAHDDVD 544 (614)
Q Consensus 517 t~Tsag~~LK~hYERyLleYE~ahdDed 544 (614)
++++++.||++|+|||++||....+..
T Consensus 78 -~~~~~~~Lr~~Y~k~L~~yE~~~~~~~ 104 (122)
T 2eqy_A 78 -GKAVGSHIRGHYERILNPYNLFLSGDS 104 (122)
T ss_dssp -SSHHHHHHHHHHHHTHHHHHHHHHCCT
T ss_pred -CCcHHHHHHHHHHHHhHHHHHHHhcCC
Confidence 467899999999999999999776554
No 6
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=99.85 E-value=6.1e-22 Score=176.67 Aligned_cols=92 Identities=22% Similarity=0.448 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCC
Q 007176 437 VCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLT 515 (614)
Q Consensus 437 ~~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p 515 (614)
.+.+++|+++|++||+.||+++. .|+++||+||||+||++|+++|||++|++ ++|+ +|++.|+ ++
T Consensus 9 ~r~~~~Fl~~L~~F~~~rG~~l~----------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~ 74 (117)
T 2jrz_A 9 TRVKLNYLDQIAKFWEIQGSSLK----------IPNVERRILDLYSLSKIVVEEGGYEAICKDRRWA-RVAQRLN---YP 74 (117)
T ss_dssp TTTHHHHHHHHHHHHHTTTSCCC----------CCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHH-HHHHHTT---CC
T ss_pred hhHHHHHHHHHHHHHHHcCCCCC----------CCeECCEeecHHHHHHHHHHccCHHHhcccCcHH-HHHHHhC---CC
Confidence 45688999999999999999952 36999999999999999999999999955 5899 9999999 44
Q ss_pred CccccHHHHHHHHHHHhhhhhhcccccc
Q 007176 516 NRMTGVGNTLKRHYETYLLEYELAHDDV 543 (614)
Q Consensus 516 ~t~Tsag~~LK~hYERyLleYE~ahdDe 543 (614)
.+ +++++.||++|+|||++||......
T Consensus 75 ~~-~~a~~~Lk~~Y~k~L~~yE~~~~~~ 101 (117)
T 2jrz_A 75 PG-KNIGSLLRSHYERIVYPYEMYQSGA 101 (117)
T ss_dssp TT-CTHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44 8999999999999999999977543
No 7
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=180.54 Aligned_cols=89 Identities=30% Similarity=0.503 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCCcc
Q 007176 440 EEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNRM 518 (614)
Q Consensus 440 eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~t~ 518 (614)
+++|+++|++||++||+|+.. .|+|+|++||||+||++|+++|||++|++ ++|+ +|+..|+ ++.++
T Consensus 35 ~~~Fl~~L~~F~~~rG~pl~~---------~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~~~~ 101 (145)
T 2kk0_A 35 RKEFLDDLFSFMQKRGTPVNR---------IPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR-EITKGLN---LPTSI 101 (145)
T ss_dssp HHHHHHHHHHHHHHTTCCCSS---------CCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHH-HHHHHTT---CCTTS
T ss_pred HHHHHHHHHHHHHHcCCCCcc---------ceeECCEEecHHHHHHHHHHhCCHHHhcccCcHH-HHHHHhC---CCCCc
Confidence 789999999999999999532 57999999999999999999999999965 6899 9999998 66678
Q ss_pred ccHHHHHHHHHHHhhhhhhcccc
Q 007176 519 TGVGNTLKRHYETYLLEYELAHD 541 (614)
Q Consensus 519 Tsag~~LK~hYERyLleYE~ahd 541 (614)
|++++.||++|+|||++||....
T Consensus 102 tsa~~~Lk~~Y~k~L~~yE~~~~ 124 (145)
T 2kk0_A 102 TSAAFTLRTQYMKYLYPYECEKR 124 (145)
T ss_dssp TTHHHHHHHHHHHHSSHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 8
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=99.84 E-value=1.5e-21 Score=175.81 Aligned_cols=89 Identities=24% Similarity=0.422 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCC
Q 007176 438 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 516 (614)
Q Consensus 438 ~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~ 516 (614)
..++.|+++|++||++||+++.. .|+++||+||||+||++|+++|||++|++ ++|+ +|++.|+ ++.
T Consensus 20 ~~~~~Fl~~L~~F~~~rG~~~~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~~ 86 (125)
T 2cxy_A 20 PERKLWVDRYLTFMEERGSPVSS---------LPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWR-ELATNLN---VGT 86 (125)
T ss_dssp TTHHHHHHHHHHHHHHTTCCCCB---------CCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHH-HHHHHTT---SCS
T ss_pred hhHHHHHHHHHHHHHHcCCCCCC---------CeeECCEeecHHHHHHHHHHcCCHHHhcccCcHH-HHHHHhC---CCC
Confidence 35788999999999999999532 57999999999999999999999999955 5899 9999998 443
Q ss_pred ccccHHHHHHHHHHHhhhhhhccc
Q 007176 517 RMTGVGNTLKRHYETYLLEYELAH 540 (614)
Q Consensus 517 t~Tsag~~LK~hYERyLleYE~ah 540 (614)
++++++.||++|+|||++||..+
T Consensus 87 -~~s~~~~Lk~~Y~k~L~~yE~~~ 109 (125)
T 2cxy_A 87 -SSSAASSLKKQYIQYLFAFECKI 109 (125)
T ss_dssp -SHHHHHHHHHHHHHHTHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999985
No 9
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.1e-21 Score=169.66 Aligned_cols=88 Identities=31% Similarity=0.518 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCCc
Q 007176 439 SEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTNR 517 (614)
Q Consensus 439 ~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~t 517 (614)
.++.|+++|.+||++||+++. .|.++||+||||+||++|+++|||++|++ ++|+ +|+..|+ ++.
T Consensus 15 ~~~~F~~~L~~F~~~~g~~l~----------~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~-~va~~lg---~~~- 79 (107)
T 2lm1_A 15 VKLNFLDQIAKFWELQGSSLK----------IPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWA-KVANRMQ---YPS- 79 (107)
T ss_dssp HHHHHHHHHHHHHTTTCCCCS----------CCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHH-HHHHHTT---CCC-
T ss_pred HHHHHHHHHHHHHHHcCCCCC----------CCeECCEeecHHHHHHHHHHhcCHHHhcccCcHH-HHHHHhC---CCC-
Confidence 467899999999999999852 46999999999999999999999999954 5899 9999998 443
Q ss_pred cccHHHHHHHHHHHhhhhhhcccc
Q 007176 518 MTGVGNTLKRHYETYLLEYELAHD 541 (614)
Q Consensus 518 ~Tsag~~LK~hYERyLleYE~ahd 541 (614)
++++++.||++|+|||++||....
T Consensus 80 ~~~~~~~lk~~Y~k~L~~yE~~~~ 103 (107)
T 2lm1_A 80 SKSVGATLKAHYERILHPFEVYTS 103 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhHHHHHHHh
Confidence 389999999999999999998654
No 10
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=99.82 E-value=7.2e-21 Score=171.83 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=77.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCc
Q 007176 435 IQVCSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHT 513 (614)
Q Consensus 435 l~~~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~ 513 (614)
.....+++|+++|++||++||+|+.. .|+|+||+||||+||++|+++|||++|++ ++|+ +|++.|+
T Consensus 14 ~~~~~~~~Fl~~L~~F~~~rG~pl~~---------~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~-~Va~~lg--- 80 (123)
T 1kkx_A 14 SNNKQYELFMKSLIENCKKRNMPLQS---------IPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWS-MVAQRLQ--- 80 (123)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTCSSSS---------CCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHH-HHHHHHT---
T ss_pred CcchhHHHHHHHHHHHHHHcCCCCCc---------CceECCEeecHHHHHHHHHHhcCHHhccccccHH-HHHHHHC---
Confidence 45567999999999999999999532 57999999999999999999999999966 5799 9999998
Q ss_pred CCCccccHHHHHHHHHHHhhhhhhccc
Q 007176 514 LTNRMTGVGNTLKRHYETYLLEYELAH 540 (614)
Q Consensus 514 ~p~t~Tsag~~LK~hYERyLleYE~ah 540 (614)
++. ++.||++|+|||++||...
T Consensus 81 ~~~-----~~~Lr~~Y~k~L~~yE~~~ 102 (123)
T 1kkx_A 81 ISD-----YQQLESIYFRILLPYERHM 102 (123)
T ss_dssp CCC-----HHHHHHHHHHHHHHHHHHS
T ss_pred CCh-----HHHHHHHHHHHHHHHHHHH
Confidence 443 8999999999999999965
No 11
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-20 Score=166.79 Aligned_cols=85 Identities=21% Similarity=0.311 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC-CCCHHHHHHhccCCcCCC
Q 007176 438 CSEEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG-INWKGQVFSKMRNHTLTN 516 (614)
Q Consensus 438 ~~eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk-kkWkgEV~~~Mgn~~~p~ 516 (614)
..++.|+++|.+||+++|+++. +.|+|+|++||||+||++|+++|||++|++ ++|+ +|+..|+ ++.
T Consensus 18 ~~~~~F~~~L~~F~~~~G~pl~---------~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~-~Va~~lg---~~~ 84 (116)
T 2li6_A 18 KQYELFMKSLIENCKKRNMPLQ---------SIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWS-MVAQRLQ---ISD 84 (116)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCS---------SCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHH-HHHHHHT---SCC
T ss_pred hhHHHHHHHHHHHHHHcCCCCC---------CCceECCEeecHHHHHHHHHHhcCHHHccccCcHH-HHHHHhC---CCh
Confidence 4689999999999999999953 257999999999999999999999999955 6899 9999998 433
Q ss_pred ccccHHHHHHHHHHHhhhhhhccc
Q 007176 517 RMTGVGNTLKRHYETYLLEYELAH 540 (614)
Q Consensus 517 t~Tsag~~LK~hYERyLleYE~ah 540 (614)
++.||++|+|||++||...
T Consensus 85 -----~~~Lr~~Y~k~L~~yE~~~ 103 (116)
T 2li6_A 85 -----YQQLESIYFRILLPYERHM 103 (116)
T ss_dssp -----TTHHHHHHHHHHSHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999854
No 12
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.05 E-value=5.6e-11 Score=97.62 Aligned_cols=56 Identities=21% Similarity=0.546 Sum_probs=43.6
Q ss_pred ccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccCC
Q 007176 544 DGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKK 606 (614)
Q Consensus 544 d~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k~ 606 (614)
+...|..|+..+ .++||.||+|++|||+.|+.++.. ..+.+ .|.||.|....-++|
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~----~~~~~---~w~C~~C~~~~~k~k 73 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAA----PPEEM---QWFCPKCANKIKKDK 73 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSC----CCSSS---CCCCTTTHHHHCSCC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCcc----CCCCC---CEEChhccCchhhcc
Confidence 347899999886 458999999999999999999852 22223 599999987655444
No 13
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-09 Score=94.43 Aligned_cols=57 Identities=19% Similarity=0.476 Sum_probs=48.6
Q ss_pred cccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccCC
Q 007176 543 VDGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKK 606 (614)
Q Consensus 543 ed~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k~ 606 (614)
++...|..|+.+. ++.+|+||.|++|||..|+.|++ ...++++ |.||.|...++.|+
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl----~~~P~g~---W~C~~C~~~~~~~~ 71 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPL----PEIPRGI---WRCPKCILAECKQP 71 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCC----SSCCSSC---CCCHHHHHHHHSCC
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCc----ccCCCCC---cCCccCcCccccCC
Confidence 3456899999875 68999999999999999999987 3677776 99999999888665
No 14
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.82 E-value=1.2e-09 Score=87.22 Aligned_cols=52 Identities=29% Similarity=0.618 Sum_probs=40.4
Q ss_pred cccccccccCCCC--CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 543 VDGECCLLCHSSA--AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 543 ed~~~C~~C~~~~--~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
+....|..|+... +++||.||.|++|||+.|+.++. +.++ .-..|.||.|..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~-----~~~~-~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITP-----ARAE-HIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCT-----TGGG-GCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcCh-----hHhc-CCCcEECCCCcC
Confidence 3457899999873 68999999999999999999883 1111 112799999975
No 15
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.82 E-value=1.5e-09 Score=90.47 Aligned_cols=62 Identities=26% Similarity=0.573 Sum_probs=44.1
Q ss_pred ccccccccCCCC--CCCeEecCCCCCccccCcccCCCCCcccCccccCC-ceeecCCccccc----ccCCCCCCCCC
Q 007176 544 DGECCLLCHSSA--AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDG-LEYVCPQCSVTN----FKKKSQKTSNG 613 (614)
Q Consensus 544 d~~~C~~C~~~~--~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg-~~Y~CP~Cs~~~----~~k~~~~~~~~ 613 (614)
....| .|+... +++||.||.|++|||+.|+.++. ...+. ..|.||.|.... .+|++.++..|
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~-------~~~~~~~~~~C~~C~~~~~~~~~K~~~~~~~~~ 79 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEE-------ENAVDIDIYHCPDCEAVFGPSIMKNWHSGPSSG 79 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCH-------HHHTTCSBBCCTTTTTTSCSCBCCCCCCSCCCC
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCccc-------ccccCCCeEECCCcccccCCCceeeeccccCCC
Confidence 34567 898874 68999999999999999998873 21222 379999998654 33444444433
No 16
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.81 E-value=3.2e-09 Score=87.84 Aligned_cols=52 Identities=31% Similarity=0.832 Sum_probs=41.2
Q ss_pred ccccccccCCCCCCCeEecCC--CC-CccccCcccCCCCCcccCccccCCceeecCCcccccccC
Q 007176 544 DGECCLLCHSSAAGDWVNCGI--CG-EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKK 605 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~--C~-~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k 605 (614)
+...| .|+..+.++||.||. |. +|||+.|+.++. .++++ |.||.|....-+|
T Consensus 15 ~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~------~p~g~---w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 15 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT------KPRGK---WFCPRCSQESGPS 69 (71)
T ss_dssp SCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSS------CCSSC---CCCTTTSSCSSSC
T ss_pred CCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCc------CCCCC---EECCCCCcccccc
Confidence 44688 799987789999999 66 899999999763 45554 9999998765443
No 17
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.77 E-value=4.1e-09 Score=85.37 Aligned_cols=58 Identities=16% Similarity=0.502 Sum_probs=46.6
Q ss_pred cccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccCCCCC
Q 007176 543 VDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKKSQK 609 (614)
Q Consensus 543 ed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k~~~~ 609 (614)
.....|..|+.+ +.+|.||.|++|||..|+.|++ +..++++ |.||.|.....++..++
T Consensus 6 ~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl----~~~P~g~---W~C~~C~~~~~~~~~~~ 63 (66)
T 1xwh_A 6 KNEDECAVCRDG--GELICCDGCPRAFHLACLSPPL----REIPSGT---WRCSSCLQATVQEVQPR 63 (66)
T ss_dssp SCCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCC----SSCCSSC---CCCHHHHHTCCCCCCCC
T ss_pred CCCCCCccCCCC--CCEEEcCCCChhhcccccCCCc----CcCCCCC---eECccccCcccccCccc
Confidence 345789999875 6899999999999999999987 3567665 99999987666555444
No 18
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.76 E-value=2.9e-09 Score=81.67 Aligned_cols=47 Identities=21% Similarity=0.567 Sum_probs=40.5
Q ss_pred cccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 547 CCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 547 ~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
.|..|+.+ +++++|.||.|++|||.+|+.|++ +..++++ |.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l----~~~P~g~---W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL----YEVPDGE---WQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC----CSCCSSC---CSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCc----CCCCCCc---EECcCccc
Confidence 59999887 478999999999999999999886 3567665 99999975
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.71 E-value=9.2e-10 Score=89.74 Aligned_cols=56 Identities=20% Similarity=0.406 Sum_probs=39.5
Q ss_pred cccccccccCCC--CCCCeEecC-CCCCccccCcccCCCCCcccCccccCCceeecCCcc
Q 007176 543 VDGECCLLCHSS--AAGDWVNCG-ICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCS 599 (614)
Q Consensus 543 ed~~~C~~C~~~--~~~~wi~CD-~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs 599 (614)
+..+.|+.|+.. ++.+||.|| +|++|||+.|+.++- .+++...+....+|.||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~-~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTE-TAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCH-HHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccCCCH-HHHHHhhccCCCcEECcCcc
Confidence 345899999987 477999999 999999999999983 11111111122379999996
No 20
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.71 E-value=8.7e-09 Score=89.34 Aligned_cols=49 Identities=33% Similarity=0.921 Sum_probs=39.6
Q ss_pred ccccccccCCCCCCCeEecCC--CC-CccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 544 DGECCLLCHSSAAGDWVNCGI--CG-EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~--C~-~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
+...| .|+..+.++||.||. |. +|||+.|+.++. .++++ |.||.|....
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~------~p~g~---W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT------KPRGK---WFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSS------CCCSS---CCCTTTCCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCc------CCCCC---EECcCccCcC
Confidence 34678 999887789999999 55 899999999873 45554 9999997644
No 21
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.67 E-value=6.2e-09 Score=90.12 Aligned_cols=51 Identities=25% Similarity=0.649 Sum_probs=40.4
Q ss_pred cccccccccCCCCCCCeEecCCCC---CccccCcccCCCCCcccCccccCCceeecCC-cccccc
Q 007176 543 VDGECCLLCHSSAAGDWVNCGICG---EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQ-CSVTNF 603 (614)
Q Consensus 543 ed~~~C~~C~~~~~~~wi~CD~C~---~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~-Cs~~~~ 603 (614)
.+...| .|+..+.++||.||.|+ +|||+.|+.++. .+++ .|.||. |....-
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~------~p~~---~W~Cp~cC~~~~k 78 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQ------APKG---KWYCSKDCKEIAN 78 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSS------CTTS---CCCSSHHHHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCc------CCCC---CccCChhhcchhh
Confidence 344678 89987778899999988 999999998873 4444 599999 875443
No 22
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.67 E-value=5.5e-09 Score=82.94 Aligned_cols=53 Identities=28% Similarity=0.670 Sum_probs=43.7
Q ss_pred ccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccC
Q 007176 544 DGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKK 605 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k 605 (614)
+...|..|+.+ +.+|.||.|++|||..|+.|++ +..++++ |.||.|+...-+|
T Consensus 4 ~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl----~~~p~g~---W~C~~C~~~~~~~ 56 (60)
T 2puy_A 4 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPL----KTIPKGM---WICPRCQDQMLKK 56 (60)
T ss_dssp CCSSCTTTCCC--SSCEECSSSSCEECGGGSSSCC----SSCCCSC---CCCHHHHHHHHHT
T ss_pred CCCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCc----CCCCCCc---eEChhccChhhch
Confidence 55789999875 6899999999999999999986 3566665 9999998765533
No 23
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1e-08 Score=80.47 Aligned_cols=50 Identities=26% Similarity=0.650 Sum_probs=41.7
Q ss_pred ccccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 542 DVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 542 Ded~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
+.+...|..|+.+ +.+|.||.|++|||..|+.|++ +..++++ |.||.|..
T Consensus 6 ~~~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl----~~~p~g~---W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPL----KTIPKGM---WICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCC----CSCCCSS---CCCHHHHC
T ss_pred CCCCCCCccCCCC--CeEEEcCCCCcceECccCCCCc----CCCCCCc---eEChhhhC
Confidence 3345789999875 5899999999999999999987 3567765 99999964
No 24
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.64 E-value=2.2e-08 Score=80.14 Aligned_cols=54 Identities=22% Similarity=0.645 Sum_probs=43.5
Q ss_pred cccccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccc
Q 007176 541 DDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 603 (614)
Q Consensus 541 dDed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~ 603 (614)
+|.+...|..|+.+ +.+|.||.|+++||..|+.+++ ++.++++ |.||.|....-
T Consensus 5 ~d~~~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl----~~~p~g~---W~C~~C~~~~~ 58 (61)
T 1mm2_A 5 SDHHMEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPL----PEIPNGE---WLCPRCTCPAL 58 (61)
T ss_dssp SCSSCSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCC----SSCCSSC---CCCTTTTTTCC
T ss_pred ccCCCCcCCCCCCC--CCEEEcCCCCHHHcccccCCCc----CcCCCCc---cCChhhcCchh
Confidence 34455789999864 6899999999999999999986 3567665 99999986543
No 25
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.63 E-value=4e-09 Score=92.84 Aligned_cols=57 Identities=23% Similarity=0.444 Sum_probs=40.8
Q ss_pred cccccccCCC--CCCCeEecC-CCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 545 GECCLLCHSS--AAGDWVNCG-ICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 545 ~~~C~~C~~~--~~~~wi~CD-~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
.+.|++|+.. ++++||.|| +|++|||+.|+.++.. .+++.......+|.||.|....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~-~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTES-AYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHH-HHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHH-HHHhhccCCCCCEECccccCcC
Confidence 3689999988 577899998 9999999999998831 1111100111479999998654
No 26
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.63 E-value=1.6e-08 Score=82.64 Aligned_cols=50 Identities=26% Similarity=0.543 Sum_probs=42.1
Q ss_pred ccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 544 DGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
....|..|+.+ +.+|+||.|+++||..|+.|++ ++.++++ |.|+.|++..
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l----~~~P~g~---W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAG----TSRPGTG---LRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTT----CCCCSSS---CCCTTTTTCC
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCcc----CcCCCCC---EECccccCCC
Confidence 34679999854 5699999999999999999997 4778776 9999998653
No 27
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.62 E-value=1.6e-08 Score=80.97 Aligned_cols=52 Identities=19% Similarity=0.563 Sum_probs=42.8
Q ss_pred ccccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 542 DVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 542 Ded~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
+.+...|..|+.+ +.+|.||.|++|||..|+.+++ +..++++ |.||.|+.+.
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l----~~~p~g~---W~C~~C~~~g 59 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDM----EKAPEGK---WSCPHCEKEG 59 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTC----CSCCCSS---CCCTTGGGGS
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCC----CCCCCCc---eECccccccc
Confidence 3445789999874 6899999999999999999986 3567775 9999998653
No 28
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.60 E-value=1.6e-08 Score=81.04 Aligned_cols=58 Identities=22% Similarity=0.521 Sum_probs=44.9
Q ss_pred cccccccccCCC---CCCCeEecCCCCCccccCcccCCCCCcccC-c-cccCCceeecCCcccccccCC
Q 007176 543 VDGECCLLCHSS---AAGDWVNCGICGEWAHFGCDRRQGLGAFKD-Y-AKTDGLEYVCPQCSVTNFKKK 606 (614)
Q Consensus 543 ed~~~C~~C~~~---~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd-~-ak~eg~~Y~CP~Cs~~~~~k~ 606 (614)
.....|..|+.+ +++.+|.||+|+++||.+|+.|++. .+ . ++++ |.|+.|....-.|+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~---~~~~~p~~~---W~C~~C~~~~~~kr 66 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHID---SSVIDSDEK---WLCRQCVFATTTKR 66 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCC---HHHHHSSCC---CCCHHHHHTTSCCC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCccc---ccccCCCCC---EECCCCcCccccCC
Confidence 345789999887 3589999999999999999999862 11 1 4554 99999987655543
No 29
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.59 E-value=2.8e-08 Score=86.25 Aligned_cols=49 Identities=24% Similarity=0.711 Sum_probs=38.7
Q ss_pred ccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 544 DGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 544 d~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
+...| .|+... +++||.||.|++|||..|+.++. .+++. .|.||.|...
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~----~~~p~----~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDR----QHIPD----TYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCT----TSCCS----SBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCc----cCCCC----CEECCCCcCC
Confidence 34578 788774 78999999999999999999985 23432 4999999743
No 30
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.57 E-value=1.1e-08 Score=82.73 Aligned_cols=47 Identities=30% Similarity=0.763 Sum_probs=38.4
Q ss_pred ccccccccCCCCCCCeEecCCCC---CccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 544 DGECCLLCHSSAAGDWVNCGICG---EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~C~---~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
+...| .|+..+.++||.||.|+ +|||+.|+.++. .+++ .|.||.|..
T Consensus 10 e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvgl~~------~p~~---~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTY------KPKG---KWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS------CCSS---CCCCHHHHT
T ss_pred CCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCCcCc------CCCC---CEECcCccc
Confidence 34678 89987778999999966 999999999873 4455 499999965
No 31
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.56 E-value=7.1e-09 Score=85.57 Aligned_cols=55 Identities=25% Similarity=0.698 Sum_probs=40.0
Q ss_pred cccccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCcccc---CCceeecCCcccc
Q 007176 541 DDVDGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKT---DGLEYVCPQCSVT 601 (614)
Q Consensus 541 dDed~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~---eg~~Y~CP~Cs~~ 601 (614)
.|.....| .|+... .++||.||.|++|||+.|+.++. ..++. ....|.||.|...
T Consensus 12 ~d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~-----~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 12 YDPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISE-----ARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCH-----HHHHHHHHHTCCCCCHHHHHH
T ss_pred cCCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccch-----hhhhhccCCCCeEECcCCcCc
Confidence 33345678 799885 46999999999999999998873 11110 1236999999754
No 32
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=98.56 E-value=1.4e-08 Score=78.80 Aligned_cols=45 Identities=31% Similarity=0.795 Sum_probs=34.3
Q ss_pred ccccCCC--CCCCeEecC-CCCCccccCcccCCCCCcccCccccCCceeecCCcc
Q 007176 548 CLLCHSS--AAGDWVNCG-ICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCS 599 (614)
Q Consensus 548 C~~C~~~--~~~~wi~CD-~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs 599 (614)
|.+|+.. ++++||.|| .|++|||+.|+.++. +.+ +...|.||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~-----~~~--~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSP-----EMA--ENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCH-----HHH--HHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCc-----ccc--CCCCEECCCCC
Confidence 6778776 367899999 899999999998873 221 11369999995
No 33
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.56 E-value=2.4e-08 Score=81.85 Aligned_cols=49 Identities=20% Similarity=0.645 Sum_probs=38.4
Q ss_pred cccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 543 VDGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 543 ed~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
.+...| .|+... .++||.||.|++|||+.|+.++. +..+. .|.||.|..
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~-----~~~~~---~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRK-----SNVPE---VFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCT-----TSCCS---SCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCc-----ccCCC---cEECCCCCC
Confidence 345678 999885 56899999999999999999984 12222 699999964
No 34
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.55 E-value=1.3e-08 Score=81.40 Aligned_cols=47 Identities=34% Similarity=0.931 Sum_probs=38.1
Q ss_pred ccccccccCCCCCCCeEecCC--CC-CccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 544 DGECCLLCHSSAAGDWVNCGI--CG-EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~--C~-~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
+...| .|+..+.++||.||. |. +|||+.|+.++. .+++ .|.||.|..
T Consensus 8 e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~------~p~~---~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTT------KPKG---KWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS------CCSS---CCCCHHHHC
T ss_pred CCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCccc------CCCC---CEECcCccC
Confidence 45678 899877789999999 66 899999999873 4444 499999965
No 35
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.54 E-value=3.5e-08 Score=81.25 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=40.5
Q ss_pred cccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 547 CCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 547 ~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.|..|+.+ +++.+|.||+|+++||.+|+.|++ +..+++ .+|.||.|+.+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl----~~~P~g--~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL----SSVPSE--DEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCC----SSCCSS--SCCCCTTTSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCc----CCCCCC--CCcCCcCccCc
Confidence 56778877 478999999999999999999997 456766 24999999854
No 36
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=2e-08 Score=82.91 Aligned_cols=50 Identities=30% Similarity=0.785 Sum_probs=39.8
Q ss_pred cccccccCCCCCCCeEecCCCC---CccccCcccCCCCCcccCccccCCceeecCCccccccc
Q 007176 545 GECCLLCHSSAAGDWVNCGICG---EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFK 604 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~---~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~ 604 (614)
...|. |+..+.++||.||.|+ +|||+.|+.++. .+++ .|.||.|....-+
T Consensus 6 ~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~------~p~~---~w~Cp~C~~~~~k 58 (70)
T 1x4i_A 6 SGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE------APKG---KWYCPQCTAAMKR 58 (70)
T ss_dssp CCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS------CCSS---CCCCHHHHHHHHH
T ss_pred CeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc------CCCC---CEECCCCCccccc
Confidence 45675 9888788999999997 999999999873 3455 4999999865543
No 37
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.53 E-value=1.5e-08 Score=81.01 Aligned_cols=50 Identities=32% Similarity=0.810 Sum_probs=38.2
Q ss_pred cccccccccccCCCCCCCeEecCCCC---CccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 541 DDVDGECCLLCHSSAAGDWVNCGICG---EWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 541 dDed~~~C~~C~~~~~~~wi~CD~C~---~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
|+.+...| .|+..+.++||.||+|+ +|||+.|+.++. .++++ |.||.|..
T Consensus 6 d~~e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvgl~~------~p~g~---w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT------KPRGK---WFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS------CCSSC---CCCHHHHC
T ss_pred CCCCCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCCCCc------CCCCC---EECcCccC
Confidence 33345678 79988778999999955 999999999763 45554 99999964
No 38
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.50 E-value=3.1e-08 Score=81.18 Aligned_cols=51 Identities=24% Similarity=0.489 Sum_probs=38.2
Q ss_pred ccccccccccCCCC-C-CCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 542 DVDGECCLLCHSSA-A-GDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 542 Ded~~~C~~C~~~~-~-~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
|.....| .|+... + ++||.||.|++|||+.|+.++.. +. .-..|.||.|..
T Consensus 13 ~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~----~~---~~~~~~C~~C~~ 65 (72)
T 1wee_A 13 DNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNA----DA---LPSKFLCFRCIE 65 (72)
T ss_dssp CSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTT----SC---CCSCCCCHHHHH
T ss_pred CCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCcc----cc---CCCcEECCCccC
Confidence 3344678 699874 4 48999999999999999998731 11 123699999975
No 39
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.49 E-value=2.5e-08 Score=95.68 Aligned_cols=55 Identities=24% Similarity=0.745 Sum_probs=37.9
Q ss_pred cccccccCCCC--C---CCeEecCCCCCccccCcccCCCC--CcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSA--A---GDWVNCGICGEWAHFGCDRRQGL--GAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~--~---~~wi~CD~C~~wyH~~C~~~~~~--g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
+..|..|+... + .+||.||+|++|||+.|+.++.. -..++.+ +..+|+||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~p--e~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLP--ESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSH--HHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCC--CCCeeECcCCCCC
Confidence 45799998862 2 35999999999999999988720 0000011 2237999999754
No 40
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.49 E-value=5.5e-08 Score=93.30 Aligned_cols=52 Identities=25% Similarity=0.675 Sum_probs=42.7
Q ss_pred cccccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 541 DDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 541 dDed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
||.....|..|+.+ +.+|+||+|+++||..|+.|++ ...++++ |.||.|...
T Consensus 3 ~d~~~~~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p~l----~~~p~~~---W~C~~C~~~ 54 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG--GDLLCCEKCPKVFHLTCHVPTL----LSFPSGD---WICTFCRDI 54 (207)
T ss_dssp CCSSCSSBTTTCCC--EEEEECSSSSCEECTTTSSSCC----SSCCSSC---CCCTTTSCS
T ss_pred CCCCCCCCCCCCCC--CceEEcCCCCCccCCccCCCCC----CCCCCCC---EEeCceeCc
Confidence 34445789999866 4599999999999999999987 3567776 999999854
No 41
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.46 E-value=4.6e-08 Score=83.53 Aligned_cols=56 Identities=20% Similarity=0.487 Sum_probs=43.0
Q ss_pred cccccccCCCC---CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccc
Q 007176 545 GECCLLCHSSA---AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 603 (614)
Q Consensus 545 ~~~C~~C~~~~---~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~ 603 (614)
...|..|+.++ ++.+|.||.|++.||.+|+.|++.-.-...++++ |.|+.|....-
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~---W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLV---WYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCC---CCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCC---eeCccccchhh
Confidence 46899999874 4799999999999999999999620000146665 99999985543
No 42
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.46 E-value=1.4e-07 Score=81.42 Aligned_cols=51 Identities=25% Similarity=0.599 Sum_probs=43.1
Q ss_pred cccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 543 VDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 543 ed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
.....|..|+.+ +.+|+||.|++.||.+|+.|++ ++.++++ |.||.|....
T Consensus 23 ~n~~~C~vC~~~--g~LL~CD~C~~~fH~~Cl~PpL----~~~P~g~---W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP--GDLVMCNQCEFCFHLDCHLPAL----QDVPGEE---WSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS--SCCEECTTSSCEECTTSSSTTC----CCCCSSS---CCCCSCCCCC
T ss_pred CCCCcCcCcCCC--CCEEECCCCCCceecccCCCCC----CCCcCCC---cCCccccCCC
Confidence 345789999976 4799999999999999999987 4678776 9999998653
No 43
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.45 E-value=4.1e-08 Score=81.86 Aligned_cols=52 Identities=23% Similarity=0.554 Sum_probs=39.9
Q ss_pred ccccccccCCC-CCCCeEecC--CCCCccccCcccCCCCCcccCccc---cCCceeecCCcccc
Q 007176 544 DGECCLLCHSS-AAGDWVNCG--ICGEWAHFGCDRRQGLGAFKDYAK---TDGLEYVCPQCSVT 601 (614)
Q Consensus 544 d~~~C~~C~~~-~~~~wi~CD--~C~~wyH~~C~~~~~~g~~kd~ak---~eg~~Y~CP~Cs~~ 601 (614)
....| .|+.. +.++||.|| .|+.|||+.|+.++. ..+. ..-..|.||.|...
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~-----~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPD-----KPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCC-----TTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEcccc-----ccccccccCCCCEECCCCCcc
Confidence 44688 79998 688999999 999999999999984 1211 11127999999764
No 44
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.45 E-value=2.7e-08 Score=82.28 Aligned_cols=50 Identities=28% Similarity=0.653 Sum_probs=37.0
Q ss_pred ccccccCCC-C-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 546 ECCLLCHSS-A-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 546 ~~C~~C~~~-~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
..| .|+.. + +++||.||.|++|||+.|+.++. +.+ .+...|.||.|....
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~-----~~~-~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEE-----EEA-PDIDIYHCPNCEKTH 62 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCT-----TTG-GGBSSCCCHHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccc-----ccc-CCCCEEECCCCcccC
Confidence 345 78876 3 57999999999999999999873 111 111269999998543
No 45
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.45 E-value=3.3e-08 Score=81.81 Aligned_cols=52 Identities=15% Similarity=0.427 Sum_probs=43.4
Q ss_pred ccccccccccCCC---CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 542 DVDGECCLLCHSS---AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 542 Ded~~~C~~C~~~---~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
+.....|..|+.+ +++.+|.||.|++|||.+|+.++. .++++ |.|+.|....
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~------vP~g~---W~C~~C~~~~ 67 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY------IPEGQ---WLCRHCLQSR 67 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS------CCSSC---CCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc------CCCCC---cCCccCcCcC
Confidence 3455789999876 478999999999999999999984 67776 9999997643
No 46
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-07 Score=79.32 Aligned_cols=48 Identities=19% Similarity=0.443 Sum_probs=40.9
Q ss_pred cccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 547 CCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 547 ~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
.|..|+.. +.+.+|.||.|+++||.+|+.|++ +..+++ ..|.||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl----~~~P~g--~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPL----DKVPEE--EYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCC----SSCCCS--SCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCc----cCCCCC--CCcCCcCccC
Confidence 78999987 478999999999999999999997 356766 2499999974
No 47
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.44 E-value=1.2e-07 Score=89.21 Aligned_cols=50 Identities=18% Similarity=0.662 Sum_probs=41.3
Q ss_pred ccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 544 DGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 544 d~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
..+.|..|+.+ |.+++||+|+++||..|+.|++ ...++++ |.||.|+...
T Consensus 3 ~~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l----~~~p~~~---W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTL----TNFPSGE---WICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC--SSCEECSSSSCEECTTTSSSCC----SSCCSSC---CCCTTTSCSS
T ss_pred CCCccccCCCC--CeeeecCCCCcccCccccCCCC----CCCCCCC---EECccccCcc
Confidence 34679999866 5699999999999999999987 3567776 9999998543
No 48
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.39 E-value=2.1e-08 Score=93.09 Aligned_cols=52 Identities=29% Similarity=0.685 Sum_probs=39.1
Q ss_pred cccccccccCCCC--CCCeEecCCCCCccccCcccCCCCCcccCccccC-CceeecCCccccc
Q 007176 543 VDGECCLLCHSSA--AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTD-GLEYVCPQCSVTN 602 (614)
Q Consensus 543 ed~~~C~~C~~~~--~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~e-g~~Y~CP~Cs~~~ 602 (614)
.....| .|+... .++||.||.|++|||+.|+.++. ...+ ...|.||.|...+
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~-------~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQ-------SEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCH-------HHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCch-------hhccCccCeecCCCcchh
Confidence 345678 999863 67999999999999999998762 1111 2269999998654
No 49
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.34 E-value=6.8e-08 Score=82.68 Aligned_cols=51 Identities=16% Similarity=0.464 Sum_probs=42.5
Q ss_pred ccccccccCCC---CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccc
Q 007176 544 DGECCLLCHSS---AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 603 (614)
Q Consensus 544 d~~~C~~C~~~---~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~ 603 (614)
....|..|+.+ +++.+|.||.|+.|||.+|+.++. .++++ |.|+.|+....
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~------vP~g~---W~C~~C~~~~~ 77 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY------IPEGQ---WLCRHCLQSRA 77 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS------CCSSC---CCCHHHHHHTT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc------cCCCc---eECccccCccc
Confidence 34689999876 467999999999999999999984 57775 99999986543
No 50
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.32 E-value=2.6e-07 Score=77.68 Aligned_cols=48 Identities=23% Similarity=0.483 Sum_probs=38.3
Q ss_pred cccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 547 CCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 547 ~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
.|..|+... ++.+|.||.|+++||.+|+.|++. ..+++ .+|.||.|++
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~----~~P~g--~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLS----SVPSE--DEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCS----SCCSS--SCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCccc----CCCCC--CceECcCccc
Confidence 566677664 679999999999999999999973 55644 3599999975
No 51
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=98.32 E-value=1.9e-07 Score=76.00 Aligned_cols=50 Identities=20% Similarity=0.634 Sum_probs=37.0
Q ss_pred cccccccCCC-CCCCeEecCC--CCCccccCcccCCCCCcccCccccCCc--eeecCCccc
Q 007176 545 GECCLLCHSS-AAGDWVNCGI--CGEWAHFGCDRRQGLGAFKDYAKTDGL--EYVCPQCSV 600 (614)
Q Consensus 545 ~~~C~~C~~~-~~~~wi~CD~--C~~wyH~~C~~~~~~g~~kd~ak~eg~--~Y~CP~Cs~ 600 (614)
...| .|+.. ++++||.||+ |+.|||+.|+.++. ..++..-+ .|.||.|..
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~-----~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPD-----KPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCS-----STTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCc-----ccccccCCCCcEECcCccC
Confidence 4567 69887 4789999996 99999999998863 12221111 699999964
No 52
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.31 E-value=1.6e-07 Score=72.74 Aligned_cols=43 Identities=21% Similarity=0.709 Sum_probs=33.7
Q ss_pred ccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 550 LCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 550 ~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
.|+... .++||.||.|++|||+.|+.++. +..+. .|.||.|..
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~-----~~~~~---~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRK-----SNVPE---VFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCG-----GGCCS---SCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCc-----ccCCC---cEECcCCCC
Confidence 477764 56999999999999999999883 22222 699999964
No 53
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.29 E-value=1.9e-07 Score=82.56 Aligned_cols=52 Identities=21% Similarity=0.428 Sum_probs=43.4
Q ss_pred cccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccC
Q 007176 547 CCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKK 605 (614)
Q Consensus 547 ~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k 605 (614)
.|..|+..+ ++.+|.||.|+++||.+|+.|++ ++.++++ |.||.|....-.|
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl----~~~P~g~---W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPV----AEPPEGS---WSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCC----SSCCSSC---CCCHHHHHHHHHT
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCc----cCCCCCC---eECccccchhhcc
Confidence 688888874 78999999999999999999987 4677776 9999998655443
No 54
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.29 E-value=2.8e-07 Score=91.34 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=37.4
Q ss_pred ccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 546 ECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 546 ~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
..|..|+.++ .+.+|+||+|+++||..|+.||+ +..+++ ..|.||.|...
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL----~~vP~G--~~W~Cp~C~~~ 225 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL----SSVPSE--DEWYCPECRND 225 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCC----CSCCSS--SCCCCGGGC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCc----ccCCCC--CCCCCcCCcCc
Confidence 3699999874 78999999999999999999997 356766 14999999753
No 55
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.26 E-value=3.3e-07 Score=99.94 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=37.1
Q ss_pred cccccCC--CCCCCeEecCCCCCccccCcccCCCCCcccCccccCCc-eeecCCcccc
Q 007176 547 CCLLCHS--SAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGL-EYVCPQCSVT 601 (614)
Q Consensus 547 ~C~~C~~--~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~-~Y~CP~Cs~~ 601 (614)
.|..+|- +.+.+||.||.|++|||+.|+.++ ...++.+ +|.||.|...
T Consensus 44 s~kk~~~~~n~~~~mI~CD~C~~WfH~~CVgi~-------~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 44 SKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLE-------QFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp SCCCTTTTTTSTTSEEECTTTCCEEEGGGTTCC-------GGGTTTEEECCCTTTHHH
T ss_pred cccccccCCCcCCCEEECCCCCcCCCCcCCCCC-------hhHhcCCCeEECcCCcCC
Confidence 4445555 357899999999999999999998 3344544 8999999854
No 56
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.20 E-value=7.8e-07 Score=84.90 Aligned_cols=49 Identities=27% Similarity=0.640 Sum_probs=41.2
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
...|..|+.+ +.+++||+|++.||..|+.|++ ++.++++ |.||.|+...
T Consensus 2 ~~~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p~l----~~~p~g~---W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP--GDLVMCNQCEFCFHLDCHLPAL----QDVPGEE---WSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC--SSCCCCTTTCCBCCSTTSTTCC----SSCCCTT---CCTTTTSCSC
T ss_pred CCcCccCCCC--CceeECCCCCchhccccCCCCc----ccCCCCC---CCCcCccCCC
Confidence 3579999966 4699999999999999999986 4677776 9999998653
No 57
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.14 E-value=1.3e-06 Score=77.69 Aligned_cols=56 Identities=18% Similarity=0.440 Sum_probs=46.0
Q ss_pred cccccccccccCCCCCCCeEecC--CCCCccccCcccCCCCCcccCccccCCceeecCCcccccccCCC
Q 007176 541 DDVDGECCLLCHSSAAGDWVNCG--ICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKKS 607 (614)
Q Consensus 541 dDed~~~C~~C~~~~~~~wi~CD--~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k~~ 607 (614)
++++.+.|..|+. .+.+|+|| +|.+|||..|+..+ .+++++ |.||.|.-..|.|++
T Consensus 11 ~~~~~~~C~~C~~--~G~ll~CD~~~Cp~~fH~~Cl~L~------~~P~g~---W~Cp~c~C~~C~k~~ 68 (107)
T 4gne_A 11 KQMHEDYCFQCGD--GGELVMCDKKDCPKAYHLLCLNLT------QPPYGK---WECPWHQCDECSSAA 68 (107)
T ss_dssp CCSSCSSCTTTCC--CSEEEECCSTTCCCEECTGGGTCS------SCCSSC---CCCGGGBCTTTCSBC
T ss_pred cCCCCCCCCcCCC--CCcEeEECCCCCCcccccccCcCC------cCCCCC---EECCCCCCCcCCCCC
Confidence 3345578999984 46899999 99999999999743 578876 999999988888774
No 58
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.11 E-value=3.9e-07 Score=98.39 Aligned_cols=49 Identities=27% Similarity=0.669 Sum_probs=37.9
Q ss_pred cccccccCCC-C-CCCeEecCCCCCccccCcccCCCCCcccCccccCC-ceeecCCcccc
Q 007176 545 GECCLLCHSS-A-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDG-LEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~-~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg-~~Y~CP~Cs~~ 601 (614)
...| .|+.. + +++||.||.|++|||+.|+.++- ...+. -.|.||.|...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~-------~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEE-------HHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCG-------GGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCc-------ccccCCCEEECCCCcCC
Confidence 3567 89886 3 78999999999999999998872 22222 27999999743
No 59
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.08 E-value=2.2e-06 Score=75.52 Aligned_cols=47 Identities=21% Similarity=0.509 Sum_probs=39.8
Q ss_pred cccccCCC--CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccc
Q 007176 547 CCLLCHSS--AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 547 ~C~~C~~~--~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~ 600 (614)
+|..|+.. +++.+|.||.|+++||.+|+.|++ ++.++++ |.||.|..
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l----~~~P~~~---W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPL----TRMPKGM---WICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCC----SSCCSSC---CCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCC----CCCCCCC---eECCCCCC
Confidence 68888864 467999999999999999999986 4677775 99999964
No 60
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.06 E-value=1.4e-06 Score=76.11 Aligned_cols=48 Identities=21% Similarity=0.500 Sum_probs=40.1
Q ss_pred cccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 547 CCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 547 ~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.|..|+.+. ++.+|.||.|+++||..|+.|++ +..++++ |.||.|...
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl----~~~P~g~---W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVM----KSVPTNG---WKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCC----SSCCSSC---CCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCcc----ccCCCCC---cCCcCCcCc
Confidence 688888774 67999999999999999999987 4567665 999999653
No 61
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.79 E-value=1.8e-06 Score=92.55 Aligned_cols=46 Identities=28% Similarity=0.686 Sum_probs=35.8
Q ss_pred ccCCCC--CCCeEecCCCCCccccCcccCCCCCcccCccccCC-ceeecCCccccc
Q 007176 550 LCHSSA--AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDG-LEYVCPQCSVTN 602 (614)
Q Consensus 550 ~C~~~~--~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg-~~Y~CP~Cs~~~ 602 (614)
.|+... .++||.||.|++|||+.|+.++- ..++. ..|.||.|....
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~-------~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEE-------EKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCH-------HHHTTEEECCCHHHHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCc-------ccccCCCEEECCCCcccc
Confidence 787763 68999999999999999998872 22233 379999997543
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.79 E-value=4.4e-06 Score=72.32 Aligned_cols=41 Identities=22% Similarity=0.801 Sum_probs=30.1
Q ss_pred CeEecCCCCCccccCcccCCCCCcccCc----cc-cCCceeecCCcccccc
Q 007176 558 DWVNCGICGEWAHFGCDRRQGLGAFKDY----AK-TDGLEYVCPQCSVTNF 603 (614)
Q Consensus 558 ~wi~CD~C~~wyH~~C~~~~~~g~~kd~----ak-~eg~~Y~CP~Cs~~~~ 603 (614)
.||.||+|++|||+.|..++. |+ ++ .+...|.||.|.....
T Consensus 1 ~mi~c~~c~~w~H~~c~~~~~-----~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCENLSD-----EMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCCSCCSSCHHHHHCCCCH-----HHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred CccccccCCCccCCcccccCH-----HHHHHHhhccccceeeCcccccccc
Confidence 379999999999999998762 10 11 2455799999985433
No 63
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=97.39 E-value=0.00013 Score=63.57 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=38.8
Q ss_pred ccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcc
Q 007176 544 DGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCS 599 (614)
Q Consensus 544 d~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs 599 (614)
..+.|..|+.+. .+.+|.||.|.+.||..|+.++.. ..+++ .|.||.|.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~----~~~~~---~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT----PLKRA---GWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC----TTTST---TCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc----ccccc---CccCCcCC
Confidence 346899999885 468899999999999999999852 22233 49999995
No 64
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.17 E-value=0.00018 Score=62.97 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=30.2
Q ss_pred CCCeEecCCCCCccccCcccCCCCCcccCccccCCc-eeecCCccccc
Q 007176 556 AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGL-EYVCPQCSVTN 602 (614)
Q Consensus 556 ~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~-~Y~CP~Cs~~~ 602 (614)
++.|+.||.|++|||..|+.++..+.. ..+-+ .|.||.|..+.
T Consensus 72 ~~~m~~C~~C~~~~H~~C~~~~~~~~~----~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 72 EKKLMECCICNEIVHPGCLQMDGEGLL----NEELPNCWECPKCYQED 115 (117)
T ss_dssp GGSCEEETTTCCEECGGGCCSCCCCEE----CSSSSSEEECTTTC---
T ss_pred CcceEEeeecCCeEECCCCCCCccccc----cccCCCCeECCCCcCCC
Confidence 567999999999999999998753221 12222 59999997543
No 65
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=96.63 E-value=0.00089 Score=62.29 Aligned_cols=71 Identities=17% Similarity=0.298 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhhhhccccccccccccccCCCCCCCeEecCCCCCccccCcccCCCC-CcccC--ccccCCceeecCCc
Q 007176 522 GNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGL-GAFKD--YAKTDGLEYVCPQC 598 (614)
Q Consensus 522 g~~LK~hYERyLleYE~ahdDed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~-g~~kd--~ak~eg~~Y~CP~C 598 (614)
-..=+..|....+.|+ ||.....|..|+.+ |.+++||.|-+.||..|+.|++- |..++ .+.+ .|.||.|
T Consensus 43 C~~C~~~y~~~~~~~d---~Dg~~d~C~vC~~G--G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~---~W~C~~C 114 (142)
T 2lbm_A 43 CKNCFKYYMSDDISRD---SDGMDEQCRWCAEG--GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN---QWYCYIC 114 (142)
T ss_dssp EHHHHHHHHHSCCCBC---TTSCBCSCSSSCCC--SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT---CCCCTTT
T ss_pred cHHHHHHHhcCCceec---CCCCCCeecccCCC--CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC---CCEeecc
Confidence 3444555555544332 33344799999976 46999999999999999998851 11112 1344 4999999
Q ss_pred cc
Q 007176 599 SV 600 (614)
Q Consensus 599 s~ 600 (614)
..
T Consensus 115 ~~ 116 (142)
T 2lbm_A 115 HP 116 (142)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 66
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.53 E-value=0.00082 Score=59.35 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=36.0
Q ss_pred ccccccCCC--------CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcc
Q 007176 546 ECCLLCHSS--------AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCS 599 (614)
Q Consensus 546 ~~C~~C~~~--------~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs 599 (614)
..|..|.++ +.+.+|.||.|.+.||..|+.++.. .-+.++++ .|.||+|.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~-~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLN-MTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHH-HHHHHHHT---TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhh-hhhccCCC---ccCccccC
Confidence 468999654 2579999999999999999987620 00123444 49999994
No 67
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=96.50 E-value=0.00065 Score=59.74 Aligned_cols=56 Identities=16% Similarity=0.463 Sum_probs=37.8
Q ss_pred ccccccCCC-------CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcc-cccccC
Q 007176 546 ECCLLCHSS-------AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCS-VTNFKK 605 (614)
Q Consensus 546 ~~C~~C~~~-------~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs-~~~~~k 605 (614)
.+|..|++. ..|.+|.|+.|+++||.+|+..... .-+..+++ .|.||+|. =..|.+
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~-~~~~~~~~---~W~C~~C~~C~vC~~ 69 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPE-LTVRVKAL---RWQCIECKTCSSCRD 69 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHH-HHHHHHTS---CCCCTTTCCBTTTCC
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHH-HHHHhhcc---ccccccCCccccccC
Confidence 579999664 3679999999999999999965310 00112233 59999994 344443
No 68
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=96.03 E-value=0.001 Score=60.97 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhhhhccccccccccccccCCCCCCCeEecCCCCCccccCcccCCCC-CcccCc--cccCCceeecCCc
Q 007176 522 GNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGL-GAFKDY--AKTDGLEYVCPQC 598 (614)
Q Consensus 522 g~~LK~hYERyLleYE~ahdDed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~-g~~kd~--ak~eg~~Y~CP~C 598 (614)
-..=+..|....+.|+ ||.....|..|+.+ +.+++||.|-+.||..|+.|++- |+.++. +.+ .|+|+.|
T Consensus 37 C~~C~~~y~~~~~~~d---~Dg~~~~C~vC~dG--G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~---~W~C~~C 108 (129)
T 3ql9_A 37 CKNCFKYYMSDDISRD---SDGMDEQCRWCAEG--GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENN---QWYCYIC 108 (129)
T ss_dssp EHHHHHHHHHSCCCBC---TTSCBSSCTTTCCC--SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTS---CCCCTTT
T ss_pred CHhHHhhhhccccccC---CCCCCCcCeecCCC--CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCC---CeEcCCc
Confidence 3344555555444432 23233679999976 67999999999999999998741 111222 233 5999999
Q ss_pred cc
Q 007176 599 SV 600 (614)
Q Consensus 599 s~ 600 (614)
..
T Consensus 109 ~~ 110 (129)
T 3ql9_A 109 HP 110 (129)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 69
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=95.91 E-value=0.002 Score=55.83 Aligned_cols=55 Identities=29% Similarity=0.557 Sum_probs=40.9
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCCCCCccc------CccccCCceeecCCccc
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFK------DYAKTDGLEYVCPQCSV 600 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~k------d~ak~eg~~Y~CP~Cs~ 600 (614)
...|..|+.-..+.++-|.+|.+-||..|+++.+..... .-|+++ +-|.|+.|-+
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~-~GWSC~~Cen 75 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTE-TGWSCHYCDN 75 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSS-SSCCCTTTCC
T ss_pred CcccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCC-CCccccccch
Confidence 357999998889999999999999999999997521111 111111 3699999953
No 70
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=91.55 E-value=0.14 Score=49.35 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=31.8
Q ss_pred cCCC-C-CCCeEecCCCCCccccCcccCCCCCcccCccccCCc-eeecCCccc
Q 007176 551 CHSS-A-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGL-EYVCPQCSV 600 (614)
Q Consensus 551 C~~~-~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~-~Y~CP~Cs~ 600 (614)
||+. + ...++.|+.|.+|||..|+..+. |.. .+ ++.- .+.|-.|+.
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~-~~~--lp-~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDT-SSC--LP-FMTNYSFHCNVCHH 58 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCC-TTC--CT-TCCSEEEECTTTST
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccc-cCc--cc-cceeEEEEccccCC
Confidence 6664 2 66899999999999999998763 111 00 0111 789999985
No 71
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.12 E-value=1.5 Score=36.45 Aligned_cols=61 Identities=18% Similarity=0.386 Sum_probs=38.3
Q ss_pred ccccccccCCC-C-CCCeE---ecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccccc-CCCCCCCCC
Q 007176 544 DGECCLLCHSS-A-AGDWV---NCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFK-KKSQKTSNG 613 (614)
Q Consensus 544 d~~~C~~C~~~-~-~~~wi---~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~-k~~~~~~~~ 613 (614)
+...|.+|... + ++.++ .|.|...+||..|+..=+. .+. ...||-|...-.- .+.+++++|
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~------~~~---~~~CplCr~~~~~~~~~~P~~~~ 80 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIK------SSD---TRCCELCKYEFIMETKLSGPSSG 80 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHH------HHC---CSBCSSSCCBCCCCCCSCCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHh------hCC---CCCCCCCCCeeecCcccCCCCCC
Confidence 34689999865 2 34455 3455569999999977641 111 3689999865443 333445655
No 72
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=65.11 E-value=4 Score=29.96 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=32.0
Q ss_pred cccccccCCC-C-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSS-A-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~-~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
...|.+|... . .+.......|+-.||..|+..-+ +. ...||-|+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--------~~---~~~CP~Cr~~ 52 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--------GS---HSTCPLCRLT 52 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT--------TT---CCSCSSSCCC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHH--------Hc---CCcCcCCCCE
Confidence 4579999876 2 33445555799999999997653 11 2579999753
No 73
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=62.73 E-value=6.9 Score=30.51 Aligned_cols=39 Identities=26% Similarity=0.466 Sum_probs=28.5
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLle 535 (614)
.|.+.|...|= .+|. +|+..|. .+ .+.+.|.+|.+||.+
T Consensus 18 ~L~~~v~~~G~------~~W~-~Ia~~~~-----~R---t~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 18 ALLEAVMDCGF------GNWQ-DVANQMC-----TK---TKEECEKHYMKYFSG 56 (60)
T ss_dssp HHHHHHHHTCT------TCHH-HHHHHHT-----TS---CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCc------CcHH-HHHHHhC-----CC---CHHHHHHHHHHHccC
Confidence 35566666661 4899 9999886 22 267999999999864
No 74
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.84 E-value=1.2 Score=35.20 Aligned_cols=49 Identities=18% Similarity=0.443 Sum_probs=33.2
Q ss_pred ccccccccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 542 DVDGECCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 542 Ded~~~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
+.+...|.+|... .++.-+..--|+-.||..|+..-+ +. ...||-|+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~--------~~---~~~CP~Cr~~ 69 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--------KA---NRTCPICRAD 69 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHH--------HH---CSSCTTTCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHH--------Hc---CCcCcCcCCc
Confidence 3445789999876 344444444599999999997642 11 2589999753
No 75
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=61.81 E-value=3.3 Score=34.98 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=34.0
Q ss_pred cccccccCCCC----------------CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccCC
Q 007176 545 GECCLLCHSSA----------------AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKK 606 (614)
Q Consensus 545 ~~~C~~C~~~~----------------~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k~ 606 (614)
.+.|.+|...- ....+..-.|+-.||..|+..-+ +...+ .....||-|+..-..|+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl----~~~~~--~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY----CNGNK--DGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH----HHTCC--SSCCBCTTTCCBSSSCS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH----HcccC--CCCCcCCCCCCccCCCC
Confidence 45799995541 11233355789999999997542 11010 12478999997655444
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.50 E-value=4.6 Score=33.46 Aligned_cols=47 Identities=30% Similarity=0.588 Sum_probs=33.6
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
...|.+|...-. .-+.|..|+--||..|+..=+ +.-. .=+||.|..+
T Consensus 15 i~~C~IC~~~i~-~g~~C~~C~h~fH~~Ci~kWl----~~~~-----~~~CP~Cr~~ 61 (74)
T 2ct0_A 15 VKICNICHSLLI-QGQSCETCGIRMHLPCVAKYF----QSNA-----EPRCPHCNDY 61 (74)
T ss_dssp SCBCSSSCCBCS-SSEECSSSCCEECHHHHHHHS----TTCS-----SCCCTTTCSC
T ss_pred CCcCcchhhHcc-cCCccCCCCchhhHHHHHHHH----HhcC-----CCCCCCCcCc
Confidence 356999988742 236899999999999997653 1111 1479999855
No 77
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=58.88 E-value=2.8 Score=32.31 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=33.5
Q ss_pred ccccccccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccc
Q 007176 542 DVDGECCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 603 (614)
Q Consensus 542 Ded~~~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~ 603 (614)
+.....|.+|... ..+.-+..--|+-.||..|+..-+ +. ...||-|+..-.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~--------~~---~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWL--------IT---NKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHH--------HH---CSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHH--------Hc---CCCCcCcCcccc
Confidence 3344789999776 233334444699999999996642 11 246999986543
No 78
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=58.65 E-value=7.4 Score=32.20 Aligned_cols=36 Identities=28% Similarity=0.686 Sum_probs=20.3
Q ss_pred cccCCCCCcccCccccCCceeecCCccc--ccccCCCCCCCCCC
Q 007176 573 CDRRQGLGAFKDYAKTDGLEYVCPQCSV--TNFKKKSQKTSNGY 614 (614)
Q Consensus 573 C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~--~~~~k~~~~~~~~~ 614 (614)
..+++++ .|.|.+. .|+||-|.+ ..+.+- ..+..||
T Consensus 26 ~gi~pGT-~f~~lPd----dw~CP~Cga~K~~F~~~-~~~~sgf 63 (70)
T 1dx8_A 26 AGIPPGT-PFVDLSD----SFMCPACRSPKNQFKSI-KKVIAGF 63 (70)
T ss_dssp TTCCSSC-CGGGSCT----TCBCTTTCCBGGGEEEC-CCBCCCS
T ss_pred cCcCCCC-chhhCCC----CCcCCCCCCCHHHceEc-cccCCCh
Confidence 3445543 5667663 399999974 344333 3334454
No 79
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=57.20 E-value=7.8 Score=29.09 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=28.3
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLle 535 (614)
.|...|...| .++|. +|...|. ++ .+.+.|.+|.+||.+
T Consensus 13 ~L~~~v~~~G------~~~W~-~Ia~~~~-----~R---t~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 13 RLIKLVQKYG------PKRWS-VIAKHLK-----GR---IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHC------TTCHH-HHHTTST-----TC---CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHC------cChHH-HHHHHcC-----CC---CHHHHHHHHHHHcCc
Confidence 4566676666 24799 9998764 22 267999999999864
No 80
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=53.79 E-value=11 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLle 535 (614)
.|...|..+|- .+|. +|+..|. ++ .+.+.|.+|.+||.+
T Consensus 13 ~L~~~v~~~G~------~~W~-~Ia~~~~-----~R---t~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 13 KLKKLVEQNGT------DDWK-VIANYLP-----NR---TDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHCS------SCHH-HHHHTST-----TC---CHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCC------CCHH-HHHHHcC-----CC---CHHHHHHHHHHHcCc
Confidence 45666666652 4899 9998774 22 367999999999864
No 81
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=53.20 E-value=12 Score=29.41 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=32.9
Q ss_pred cccccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccccCC
Q 007176 545 GECCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNFKKK 606 (614)
Q Consensus 545 ~~~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~~k~ 606 (614)
...|.+|... .+..-+.---|+-.||..|+..-+ +. ...||-|+..-..+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~--------~~---~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWL--------EQ---HDSCPVCRKSLTGQN 66 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHH--------TT---TCSCTTTCCCCCCSC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHH--------Hc---CCcCcCcCCccCCcc
Confidence 4689999776 232222222489999999997652 11 258999986655443
No 82
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=52.15 E-value=8.8 Score=32.81 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=22.9
Q ss_pred eEecCCCCCcccc-----CcccCCCCCcccCccccCCceeecCCcccc
Q 007176 559 WVNCGICGEWAHF-----GCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 559 wi~CD~C~~wyH~-----~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
--.|.+|+--|-. ...+++++ .|.|.+. .|+||-|.+.
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT-~fedlPd----dW~CPvCga~ 69 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGT-RWDDIPD----DWSCPDCGAA 69 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTC-CTTTSCT----TCCCTTTCCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCC-ChhHCCC----CCcCCCCCCC
Confidence 3445556544433 34555553 5777764 3999999753
No 83
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.34 E-value=5.5 Score=39.25 Aligned_cols=46 Identities=30% Similarity=0.662 Sum_probs=34.1
Q ss_pred cccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
...|.+|.+.- .+ ..|.-|+.-||..|...-. +. ..+-+||.|...
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~----~~-----~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYF----QS-----NAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHT----TT-----CSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHH----Hh-----CCCCCCCCCCCC
Confidence 57799999873 33 8899999999999996531 11 113689999764
No 84
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.41 E-value=15 Score=29.29 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLle 535 (614)
.|...|..+| ..+|. +|+..|. .+ .+.+.|..|.+||.+
T Consensus 19 ~L~~~v~~~G------~~~W~-~Ia~~l~-----~R---t~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 19 ILKAAVMKYG------KNQWS-RIASLLH-----RK---SAKQCKARWYEWLDP 57 (70)
T ss_dssp HHHHHHHHTC------SSCHH-HHHHHST-----TC---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHC------cCCHH-HHHHHhc-----CC---CHHHHHHHHHHHcCC
Confidence 4677777776 25899 9999875 22 377999999999875
No 85
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=49.29 E-value=15 Score=28.29 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLle 535 (614)
.|...|..+| .++|. +|...|. .+ .+.+.|.+|.+||.+
T Consensus 18 ~L~~~v~~~G------~~~W~-~Ia~~~~-----~R---t~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 18 QLRALVRQFG------QQDWK-FLASHFP-----NR---TDQQCQYRWLRVLSG 56 (60)
T ss_dssp HHHHHHHHTC------TTCHH-HHHHHCS-----SS---CHHHHHHHHHHTSCS
T ss_pred HHHHHHHHhC------CCCHH-HHHHHcc-----CC---CHHHHHHHHHHHcCC
Confidence 4666777666 25899 9998875 22 267999999999864
No 86
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=49.08 E-value=4.4 Score=38.47 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=51.0
Q ss_pred cHHHHHHHHHHHhhhhhhccccccccccccccCCCCCCCeEecC--CCCCccccCcccCCC-CCcccCccccCCceeecC
Q 007176 520 GVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCG--ICGEWAHFGCDRRQG-LGAFKDYAKTDGLEYVCP 596 (614)
Q Consensus 520 sag~~LK~hYERyLleYE~ahdDed~~~C~~C~~~~~~~wi~CD--~C~~wyH~~C~~~~~-~g~~kd~ak~eg~~Y~CP 596 (614)
.+-..=+..|....+.|+ ||-....|..|+.+ +.+++|| .|.+-|=..|+.+-. .|+.++.... ..|.|-
T Consensus 57 ~lC~~Ck~~y~e~~f~~D---eDG~~~yC~wC~~G--g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~--d~W~Cy 129 (159)
T 3a1b_A 57 GMCQNCKNCFLECAYQYD---DDGYQSYCTICCGG--REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKE--DPWNCY 129 (159)
T ss_dssp EECHHHHHHHHHHTTCBC---TTSSBSSCTTTSCC--SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTS--SSCCCT
T ss_pred hhhHHHHHHHhhcccccC---CCCCcceeeEecCC--CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhcc--CCCEEE
Confidence 444455777777666652 22122689999976 5899999 899999999998864 2334333222 379999
Q ss_pred Ccccc
Q 007176 597 QCSVT 601 (614)
Q Consensus 597 ~Cs~~ 601 (614)
-|...
T Consensus 130 ~C~P~ 134 (159)
T 3a1b_A 130 MCGHK 134 (159)
T ss_dssp TTCSS
T ss_pred ecCCc
Confidence 99743
No 87
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=47.17 E-value=11 Score=29.67 Aligned_cols=36 Identities=28% Similarity=0.642 Sum_probs=21.4
Q ss_pred ecCCCCCcccc-----CcccCCCCCcccCccccCCceeecCCcccc
Q 007176 561 NCGICGEWAHF-----GCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 561 ~CD~C~~wyH~-----~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.|..|+--|-. ...+.+++ .|.|.+. .|+||.|.+.
T Consensus 5 ~C~~CGyvYd~~~Gdp~~gi~pGt-~f~~lP~----dw~CP~Cga~ 45 (55)
T 2v3b_B 5 QCVVCGFIYDEALGLPEEGIPAGT-RWEDIPA----DWVCPDCGVG 45 (55)
T ss_dssp EETTTCCEEETTTCBTTTTBCTTC-CGGGSCT----TCCCTTTCCC
T ss_pred EeCCCCeEECCCcCCcccCcCCCC-ChhHCCC----CCcCCCCCCC
Confidence 35556544433 23445543 5777764 3999999764
No 88
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=46.17 E-value=10 Score=32.80 Aligned_cols=24 Identities=29% Similarity=0.729 Sum_probs=15.9
Q ss_pred cccCCCCCcccCccccCCceeecCCcccc
Q 007176 573 CDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 573 C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
..+.++. .|.|.+. .|+||-|.+.
T Consensus 54 ~gI~pGT-~fedlPd----dW~CPvCga~ 77 (87)
T 1s24_A 54 EGFTPGT-RFEDIPD----DWCCPDCGAT 77 (87)
T ss_dssp TTCCSCC-CGGGCCT----TCCCSSSCCC
T ss_pred cCcCCCC-ChhHCCC----CCCCCCCCCC
Confidence 4455553 5777764 3999999753
No 89
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.67 E-value=16 Score=29.45 Aligned_cols=49 Identities=12% Similarity=0.247 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhhhhcc
Q 007176 481 FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELA 539 (614)
Q Consensus 481 ykLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLleYE~a 539 (614)
-.|.+.|..+|-- .....+|. .|+..|. ++ .+.+.|.+|.+||.+-...
T Consensus 17 ~~L~~~v~~~g~~-~~~~~~W~-~IA~~~~-----~R---t~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 17 KKLEQLLIKYPPE-EVESRRWQ-KIADELG-----NR---TAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp HHHHHHHHHSCCC-SCHHHHHH-HHHHHHS-----SS---CHHHHHHHHHHHHGGGSTT
T ss_pred HHHHHHHHHhCCC-CCCcccHH-HHHHHhC-----CC---CHHHHHHHHHHHHHHHHhc
Confidence 3566777777721 11125899 9999886 22 2679999999999876543
No 90
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=45.57 E-value=26 Score=27.15 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=29.1
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLL 534 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLl 534 (614)
.|...|...| ..+|. +|+..|+ . . -.+.+.|.+|.+|+.
T Consensus 19 ~L~~~v~~~G------~~~W~-~IA~~~~---~-~---Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 19 LLIDACETLG------LGNWA-DIADYVG---N-A---RTKEECRDHYLKTYI 57 (58)
T ss_dssp HHHHHHHHTT------TTCHH-HHHHHHC---S-S---CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC------cCCHH-HHHHHHC---C-C---CCHHHHHHHHHHHcc
Confidence 5677787776 25899 9999886 1 1 237799999999875
No 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.37 E-value=7.3 Score=30.07 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=32.4
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
...|.+|...-.+-.+. .|+-.||..|+..-+. ..+....||-|+..
T Consensus 20 ~~~C~IC~~~~~~~~~~--~CgH~fC~~Ci~~~~~--------~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKPVTI--DCGHNFCLKCITQIGE--------TSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSEEEC--TTCCEEEHHHHHHHCS--------SSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCeEEc--CCCChhhHHHHHHHHH--------cCCCCCCCCCCCCc
Confidence 46899998874333333 7999999999976531 11235799999865
No 92
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=45.31 E-value=10 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.3
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCC
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQ 577 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~ 577 (614)
.+.|..|+....++--.|+.|+-..|..|...+
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCS
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCC
Confidence 367999988877788899999999999999776
No 93
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=45.17 E-value=6.2 Score=42.03 Aligned_cols=76 Identities=24% Similarity=0.416 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHHhhhhhhccccccccccccccCCCCCCCeEecC--CCCCccccCcccCCC-CCcccCccccCCceeec
Q 007176 519 TGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCG--ICGEWAHFGCDRRQG-LGAFKDYAKTDGLEYVC 595 (614)
Q Consensus 519 Tsag~~LK~hYERyLleYE~ahdDed~~~C~~C~~~~~~~wi~CD--~C~~wyH~~C~~~~~-~g~~kd~ak~eg~~Y~C 595 (614)
..+-..=+..|...++.|. ||-....|..|+.+ +.+++|| .|.+-|=..|+++.+ -|+.++.- +--.|+|
T Consensus 70 v~lC~~Ck~~y~~~~f~~D---~DG~~~yCr~C~~G--g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~--~~d~W~C 142 (386)
T 2pv0_B 70 GGICAPCKDKFLDALFLYD---DDGYQSYCSICCSG--ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVH--AMSNWVC 142 (386)
T ss_dssp SBCCHHHHHHHHTTTTCBC---SSSSBCSCTTTCCC--SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHH--HCSSCCC
T ss_pred cchhhHHHHHHhccCcccC---CCCCcccceEcCCC--CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhh--ccCCceE
Confidence 3444555666666666552 22223689999976 4799999 999999999999875 12222221 1126999
Q ss_pred CCcccc
Q 007176 596 PQCSVT 601 (614)
Q Consensus 596 P~Cs~~ 601 (614)
--|...
T Consensus 143 f~C~p~ 148 (386)
T 2pv0_B 143 YLCLPS 148 (386)
T ss_dssp TTTSSC
T ss_pred EEcCCc
Confidence 999643
No 94
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=44.14 E-value=26 Score=27.77 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=30.3
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEY 536 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLleY 536 (614)
.|...|..+| ..+|. +|...|. +.++ .+.++|..|.+||.+-
T Consensus 20 ~L~~~v~~~G------~~~W~-~Ia~~~~---~~~R---t~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 20 NLRSGVRKYG------EGNWS-KILLHYK---FNNR---TSVMLKDRWRTMKKLK 61 (69)
T ss_dssp HHHHHHHHHC------SSCHH-HHHHHSC---CSSC---CHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHC------CCcHH-HHHHHcC---cCCC---CHHHHHHHHHHHcCCC
Confidence 4677777776 24899 9999875 2122 3779999999998763
No 95
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=43.88 E-value=15 Score=28.77 Aligned_cols=36 Identities=31% Similarity=0.715 Sum_probs=21.6
Q ss_pred ecCCCCCcccc-----CcccCCCCCcccCccccCCceeecCCcccc
Q 007176 561 NCGICGEWAHF-----GCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 561 ~CD~C~~wyH~-----~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.|..|+--|-. ...+.+++ .|.|.+. .|+||.|.+.
T Consensus 4 ~C~~CGyvYd~~~Gdp~~gi~pGt-~f~~lP~----dw~CP~Cg~~ 44 (52)
T 1yk4_A 4 SCKICGYIYDEDEGDPDNGISPGT-KFEDLPD----DWVCPLCGAP 44 (52)
T ss_dssp EESSSSCEEETTTCBGGGTBCTTC-CGGGSCT----TCBCTTTCCB
T ss_pred EeCCCCeEECCCcCCcccCcCCCC-CHhHCCC----CCcCCCCCCC
Confidence 45666644433 23445543 5667664 3999999864
No 96
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.87 E-value=9.7 Score=29.60 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=31.9
Q ss_pred ccccccccCCCC--CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccc
Q 007176 544 DGECCLLCHSSA--AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 603 (614)
Q Consensus 544 d~~~C~~C~~~~--~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~ 603 (614)
....|.+|...- ....... -|+-.||..|+..-+ +. ...||-|+..-.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~--------~~---~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWL--------EV---RKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHH--------HH---CSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHH--------Hc---CCcCCCcCcccc
Confidence 346899998762 3333333 499999999997642 11 248999986544
No 97
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=43.47 E-value=2.6 Score=33.27 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=34.3
Q ss_pred cccccccccccCCCCCC-CeEe--cCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 541 DDVDGECCLLCHSSAAG-DWVN--CGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 541 dDed~~~C~~C~~~~~~-~wi~--CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
||++...|.+|....++ ...- |.+.-+++|..|+..=+. .++ ...||-|...
T Consensus 2 e~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~------~~~---~~~C~~C~~~ 56 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLT------ISR---NTACQICGVV 56 (60)
T ss_dssp TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHH------HHT---CSBCTTTCCB
T ss_pred CCCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHH------hCC---CCccCCCCCe
Confidence 45566789999776433 3333 555567999999987631 112 3789999754
No 98
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=43.36 E-value=7.6 Score=28.31 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=33.0
Q ss_pred ccccccccCCC--CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 544 DGECCLLCHSS--AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 544 d~~~C~~C~~~--~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
+...|.+|... +.+.....-.|+-.||..|+..-+ +.. ..||-|+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~--------~~~---~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEML--------KEG---YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHH--------HHT---CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHH--------HcC---CcCCCCCCc
Confidence 34679999876 234456666799999999996542 111 689999753
No 99
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=42.89 E-value=23 Score=37.79 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=34.4
Q ss_pred ccccccccCCCC-C-C--CeEecC--CCCCccccCcccCCCCCcccCcccc----CCceeecCCccc
Q 007176 544 DGECCLLCHSSA-A-G--DWVNCG--ICGEWAHFGCDRRQGLGAFKDYAKT----DGLEYVCPQCSV 600 (614)
Q Consensus 544 d~~~C~~C~~~~-~-~--~wi~CD--~C~~wyH~~C~~~~~~g~~kd~ak~----eg~~Y~CP~Cs~ 600 (614)
....|++|-+.- + + --..|+ -|+.-||..|+..=+ +..+.+ +.+.-.||-|+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWL----rs~~~sRqSFnvi~G~CPyCr~ 369 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWF----KTLMDGKTFLEVSFGQCPFCKA 369 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHH----HHHHSSSCTTTCCEEECTTTCC
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHH----HhCCCccccccccCCCCCCCCC
Confidence 346899996652 2 2 335798 899999999995532 111110 234678999975
No 100
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=41.40 E-value=13 Score=31.48 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCC
Q 007176 436 QVCSEEEFLRDVMQFLILRGH 456 (614)
Q Consensus 436 ~~~~eeeFL~dL~kFhe~RGt 456 (614)
...+-++||+||.-|+++|=.
T Consensus 35 ~vl~TeeFW~DL~gFL~qRlk 55 (75)
T 2lo0_A 35 SVVATEAFWDDLQGFLEQRLK 55 (75)
T ss_dssp TTTTSHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHhcC
Confidence 345678999999999998843
No 101
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=40.60 E-value=22 Score=27.77 Aligned_cols=23 Identities=26% Similarity=0.823 Sum_probs=15.2
Q ss_pred ccCCCCCcccCccccCCceeecCCcccc
Q 007176 574 DRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 574 ~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.+.+++ .|.|.+. .|+||.|.+.
T Consensus 23 gi~pGt-~f~~lP~----dw~CP~Cg~~ 45 (52)
T 1e8j_A 23 GIKPGT-KFEDLPD----DWACPVCGAS 45 (52)
T ss_dssp TCCSSC-CTTSSCT----TCCCSSSCCC
T ss_pred CcCCCC-chHHCCC----CCcCCCCCCc
Confidence 344443 5667664 3999999864
No 102
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=39.69 E-value=9.3 Score=33.80 Aligned_cols=16 Identities=31% Similarity=1.010 Sum_probs=14.0
Q ss_pred CCCeEecCCCCCcccc
Q 007176 556 AGDWVNCGICGEWAHF 571 (614)
Q Consensus 556 ~~~wi~CD~C~~wyH~ 571 (614)
.+.|+.||.|.||.-.
T Consensus 25 ~~~WVQCD~C~KWRrL 40 (100)
T 2l7p_A 25 ESAWVRCDDCFKWRRI 40 (100)
T ss_dssp SSEEEECTTTCCEEEE
T ss_pred CCeEEeeCCCCccccC
Confidence 6789999999999754
No 103
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.66 E-value=30 Score=27.72 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=30.7
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhhhhcc
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELA 539 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLleYE~a 539 (614)
.|.+.|..+| .+|. +|+..|. ++ ...++|.+|.+||..-...
T Consensus 19 ~l~~~~~~~G-------~~W~-~Ia~~~~-----~R---t~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 19 LFEQGLAKFG-------RRWT-KISKLIG-----SR---TVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp HHHHHHHHTC-------SCHH-HHHHHHS-----SS---CHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHC-------cCHH-HHHHHcC-----CC---CHHHHHHHHHHHHHHHHhc
Confidence 4556666666 3899 9998765 22 2679999999999886554
No 104
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=37.23 E-value=21 Score=28.31 Aligned_cols=36 Identities=33% Similarity=0.723 Sum_probs=20.4
Q ss_pred ecCCCCCccccC-----cccCCCCCcccCccccCCceeecCCcccc
Q 007176 561 NCGICGEWAHFG-----CDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 561 ~CD~C~~wyH~~-----C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.|.+|+--|-.. =.+++++ .|.|.+. .|+||.|.+.
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt-~fe~lP~----dw~CP~Cg~~ 45 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGT-DFKDIPD----DWVCPLCGVG 45 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTC-CGGGSCT----TCBCTTTCCB
T ss_pred ECCCCCeEECCCcCCcccCcCCCC-ChhHCCC----CCcCcCCCCc
Confidence 466666444321 1233332 5666663 4999999864
No 105
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=36.10 E-value=17 Score=31.94 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhCCccccCCCCCCCCCCcccCCeechHHHHHHHHhhcCceeeccC----CCCHHHHHHhccCC
Q 007176 440 EEEFLRDVMQFLILRGHTRLVPQGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNG----INWKGQVFSKMRNH 512 (614)
Q Consensus 440 eeeFL~dL~kFhe~RGtp~liP~g~~s~fP~PvV~GK~LDLykLYk~V~sRGGF~kVnk----kkWkgEV~~~Mgn~ 512 (614)
+..|+..|.+++.+||..+.. -||.++|..|.+..=+=.+++ ..|+ .|.+.|..+
T Consensus 8 ~q~fi~~lk~lLk~RgIkVkk-----------------~~L~~Ff~fi~~~cPWFp~eGtl~l~~W~-kVG~~L~~~ 66 (94)
T 1bax_A 8 HERYVEQLKQALKTRGVKVKY-----------------ADLLKFFDFVKDTCPWFPQEGTIDIKRWR-RVGDCFQDY 66 (94)
T ss_pred chHHHHHHHHHHHHcCeeecH-----------------HHHHHHHHHHHHhCCCcCcCCcccHHHHH-HHHHHHHHH
Confidence 367999999999999987433 589999999988765555543 3699 888887744
No 106
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=34.42 E-value=17 Score=28.26 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=32.5
Q ss_pred cccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 545 GECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 545 ~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
...|.+|...- +-..+ -|+-.||..|...-.. ......+....||.|+..-
T Consensus 12 ~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~~~~----~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEPLSL---DCGHSLCRACITVSNK----EAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSCCCC---SSSCCCCHHHHSCCCC----CCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCeeEC---CCCCHHHHHHHHHHHH----hcccCCCCCCcCCCCCCcC
Confidence 46799998763 32332 5899999999976542 1111112368999998553
No 107
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=30.39 E-value=24 Score=29.31 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=27.7
Q ss_pred HHHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHh
Q 007176 481 FNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETY 532 (614)
Q Consensus 481 ykLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERy 532 (614)
..|...|..+| .+|. +|+..|+ + -...+.+.||.++
T Consensus 27 ~~Ll~~v~~~G-------~~W~-~IA~~v~-----~---RT~~qcr~r~~~~ 62 (79)
T 2yus_A 27 LLLLEALEMYK-------DDWN-KVSEHVG-----S---RTQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHHSS-------SCHH-HHHHHHS-----S---CCHHHHHHHHTTS
T ss_pred HHHHHHHHHhC-------CCHH-HHHHHcC-----C---CCHHHHHHHHHHh
Confidence 45667788887 5899 9999886 1 2267999999886
No 108
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.16 E-value=13 Score=28.00 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=29.5
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCc
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQC 598 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~C 598 (614)
...|.+|...-.+-.+. .|+-.||..|+..-+ +..+...+||-|
T Consensus 20 ~~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~--------~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKPVTI--DCGHNFCLKCITQIG--------ETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSCEEC--TTSSEECHHHHHHHH--------HHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCeEEe--CCCCcchHHHHHHHH--------HcCCCCCcCcCC
Confidence 46899998774333333 799999999986642 111234789987
No 109
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=28.20 E-value=13 Score=30.66 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=30.7
Q ss_pred ccccccccCCC-CCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 544 DGECCLLCHSS-AAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 544 d~~~C~~C~~~-~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
+...|.+|... .++.-+..--|+-.||..|+..-+ +. ...||-|+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl--------~~---~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWL--------QK---SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHH--------TT---TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHH--------Hc---CCcCcCcCcc
Confidence 34689999866 233333223499999999986642 11 2589999854
No 110
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.72 E-value=9.4 Score=29.84 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=31.5
Q ss_pred cccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCccccc
Q 007176 545 GECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTN 602 (614)
Q Consensus 545 ~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~ 602 (614)
...|.+|...- +-..+ .|+-.||..|+..-. +. ...++....||.|+..-
T Consensus 19 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~----~~-~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL---DCGHSFCQACLTANH----KK-SMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCSCCSSCBCC---SSSCCBCTTHHHHHH----HH-HHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCcccCCceeC---CCCCHHHHHHHHHHH----HH-hhcCCCCCcCCCCCCcc
Confidence 36899998874 32222 699999999986532 11 11112258999998543
No 111
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.63 E-value=33 Score=26.30 Aligned_cols=17 Identities=29% Similarity=0.993 Sum_probs=12.0
Q ss_pred cccCccccCCceeecCCcccc
Q 007176 581 AFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 581 ~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.|.|.+. .|+||.|.+.
T Consensus 23 ~f~~lP~----dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPD----DWCCPVCGVS 39 (46)
T ss_dssp CGGGSCT----TCBCTTTCCB
T ss_pred chhhCCC----CCcCcCCCCc
Confidence 3566653 3999999864
No 112
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=27.59 E-value=15 Score=32.79 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=0.0
Q ss_pred CCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 563 GICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 563 D~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.-|+-.||..|...=+. . +-.||-|+..
T Consensus 82 ~~C~H~FH~~CI~~Wl~--------~---~~~CP~Cr~~ 109 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLK--------T---RQVCPLDNRE 109 (117)
T ss_dssp ---------------------------------------
T ss_pred CCcCceEcHHHHHHHHH--------c---CCcCCCCCCe
Confidence 46999999999876531 1 3579999876
No 113
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=27.46 E-value=24 Score=29.08 Aligned_cols=16 Identities=38% Similarity=1.167 Sum_probs=14.0
Q ss_pred CCCeEecC--CCCCcccc
Q 007176 556 AGDWVNCG--ICGEWAHF 571 (614)
Q Consensus 556 ~~~wi~CD--~C~~wyH~ 571 (614)
...||.|| .|.+|.-.
T Consensus 15 ~~~WVQCd~p~C~KWR~L 32 (69)
T 2e61_A 15 CLVWVQCSFPNCGKWRRL 32 (69)
T ss_dssp CCCEEECSSTTTCCEEEC
T ss_pred CCeEEEeCccccCcccCC
Confidence 57999999 99999754
No 114
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.23 E-value=14 Score=29.38 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=31.4
Q ss_pred cccccccCCCC-C-CC-eEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSA-A-GD-WVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~-~-~~-wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
...|.+|...- + +. .+.- .|+-.||..|...-. +..+....||-|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~--------~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLL--------ASSINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHH--------HHCSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHH--------HcCCCCcCCCCCCCc
Confidence 36799998763 2 21 3333 699999999996642 111124899999854
No 115
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=26.98 E-value=83 Score=23.56 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=27.8
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYL 533 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyL 533 (614)
.|...|...| ..+|. +|...|. +.++ .+.++|..|..+|
T Consensus 12 ~L~~~v~~~G------~~~W~-~Ia~~~~---~~~R---t~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 12 NLRSGVRKYG------EGNWS-KILLHYK---FNNR---TSVMLKDRWRTMK 50 (53)
T ss_dssp HHHHHHHHHC------TTCHH-HHHHHSC---CSSC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHC------cCCHH-HHHHHcC---CCCC---CHHHHHHHHHHHH
Confidence 4667777776 24899 9999876 2222 3679999998876
No 116
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=26.04 E-value=15 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.520 Sum_probs=19.4
Q ss_pred cccccCCCCCCCeEecCCCCCccccCcccCCC
Q 007176 547 CCLLCHSSAAGDWVNCGICGEWAHFGCDRRQG 578 (614)
Q Consensus 547 ~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~ 578 (614)
+|..|+..+ ||.|+..||..|...++
T Consensus 9 ~C~~C~~~~------C~~C~~c~~~~~~~~~~ 34 (117)
T 4bbq_A 9 KCKACVQGE------CGVCHYCRDMKKFGGPG 34 (117)
T ss_dssp CSHHHHSCC------CSCSHHHHHSGGGTSCC
T ss_pred cCcCcCCcC------CCCCCCCcCCcccCCCC
Confidence 455555532 99999999999987764
No 117
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.34 E-value=27 Score=27.00 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=30.9
Q ss_pred cccccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 543 VDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 543 ed~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.+...|.+|...-..-... -|+-.||..|+..-+. + ...||-|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~--~CgH~fC~~Ci~~~~~-------~----~~~CP~Cr~~ 58 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSL--PCKHVFCYLCVKGASW-------L----GKRCALCRQE 58 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEE--TTTEEEEHHHHHHCTT-------C----SSBCSSSCCB
T ss_pred CCCCCCccCCcccCCCEEc--cCCCHHHHHHHHHHHH-------C----CCcCcCcCch
Confidence 3457899998764322222 5999999999976431 1 1689999855
No 118
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.91 E-value=80 Score=24.64 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhhhhccc
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAH 540 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLleYE~ah 540 (614)
.|.+.|...| .+|. +|+..++ + .+.+.|.+|..||.+-....
T Consensus 19 ~L~~~~~~~g-------~~W~-~Ia~~~g------R---t~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 19 KLLHLAKLMP-------TQWR-TIAPIIG------R---TAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp HHHHHHHHCT-------TCHH-HHHHHHS------S---CHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHcC-------CCHH-HHhcccC------c---CHHHHHHHHHHHhChHhcCC
Confidence 3455565554 3899 9998333 2 27799999999998765433
No 119
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=23.13 E-value=53 Score=24.55 Aligned_cols=44 Identities=20% Similarity=0.328 Sum_probs=28.7
Q ss_pred cccccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccccc
Q 007176 543 VDGECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVTNF 603 (614)
Q Consensus 543 ed~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~~~ 603 (614)
.+...|.+|...- +-..+ -|+-.|+..|+.. ....||-|+..-.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l---~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLL---PCLHTLCSGCLEA--------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCS---TTSCCSBTTTCSS--------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEc---CCCCcccHHHHcc--------------CCCCCCcCCcEee
Confidence 3446799998763 33333 3777888888744 1367999976533
No 120
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=22.70 E-value=63 Score=27.47 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=29.2
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLE 535 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLle 535 (614)
.|...|..+|. .+|. +|+..|. ++ .+.+.+..|.+||.+
T Consensus 11 ~L~~~v~~~g~------~~W~-~Ia~~~~-----~R---t~~qcr~Rw~~~L~p 49 (107)
T 2k9n_A 11 KLQQLVMRYGA------KDWI-RISQLMI-----TR---NPRQCRERWNNYINP 49 (107)
T ss_dssp HHHHHHHHHCS------SCHH-HHHHHTT-----TS---CHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCC------CCHH-HHhhhcC-----CC---CHHHHHHHHHHHHcc
Confidence 46677777773 5899 9999875 22 267899999999865
No 121
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=22.36 E-value=40 Score=28.40 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=30.9
Q ss_pred cccccccCCCCCCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
...|.+|...-..-... .|+-.||..|...-. .++ ...||.|+..
T Consensus 15 ~~~C~iC~~~~~~p~~~--~CgH~fC~~Ci~~~~-------~~~---~~~CP~Cr~~ 59 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL--PCNHTLCKPCFQSTV-------EKA---SLCCPFCRRR 59 (115)
T ss_dssp HHBCTTTCSBCSSCEEC--TTSCEECHHHHCCCC-------CTT---TSBCTTTCCB
T ss_pred CCCCccCCcccCceeEc--CCCCHHhHHHHHHHH-------hHC---cCCCCCCCcc
Confidence 36799998764332222 699999999987653 122 3789999864
No 122
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=29 Score=25.28 Aligned_cols=43 Identities=23% Similarity=0.507 Sum_probs=28.5
Q ss_pred cccccccCCCC-CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCc
Q 007176 545 GECCLLCHSSA-AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQC 598 (614)
Q Consensus 545 ~~~C~~C~~~~-~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~C 598 (614)
...|.+|...- +...+ .|+-.||..|+..-. ++. + ....||-|
T Consensus 15 ~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~----~~~-~---~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVII---ECGHNFCKACITRWW----EDL-E---RDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCC---SSCCCCCHHHHHHHT----TSS-C---CSCCCSCC
T ss_pred CCCCccCCcccCccEeC---CCCCccCHHHHHHHH----Hhc-C---CCCCCCCC
Confidence 46899998873 33333 589999999997653 111 1 24789987
No 123
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=22.20 E-value=56 Score=27.45 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHhhcCceeeccCCCCHHHHHHhccCCcCCCccccHHHHHHHHHHHhhhhh
Q 007176 482 NLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEY 536 (614)
Q Consensus 482 kLYk~V~sRGGF~kVnkkkWkgEV~~~Mgn~~~p~t~Tsag~~LK~hYERyLleY 536 (614)
.|.+.|...|. .+|. +|+..|. ++ .+.+.+.+|.++|.+-
T Consensus 14 ~L~~~v~~~g~------~~W~-~Ia~~l~-----~R---t~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 14 RVIKLVQKYGP------KRWS-VIAKHLK-----GR---IGKQCRERWHNHLNPE 53 (105)
T ss_dssp HHHHHHHHHCT------TCHH-HHHTTST-----TC---CHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCC------CcHH-HHhhhhc-----CC---CHHHHHHHHHhccCCc
Confidence 46677777764 4799 9998764 22 2678999999998653
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=20.74 E-value=63 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.7
Q ss_pred cccccCCCCCCCeEecCCCCCccccCcccCCC
Q 007176 547 CCLLCHSSAAGDWVNCGICGEWAHFGCDRRQG 578 (614)
Q Consensus 547 ~C~~C~~~~~~~wi~CD~C~~wyH~~C~~~~~ 578 (614)
.|..|+..+. +.|..|...||..|+...+
T Consensus 60 ~C~~C~k~~~---~~C~~Cp~sfC~~c~~g~l 88 (107)
T 4gne_A 60 QCDECSSAAV---SFCEFCPHSFCKDHEKGAL 88 (107)
T ss_dssp BCTTTCSBCC---EECSSSSCEECTTTCTTSC
T ss_pred CCCcCCCCCC---cCcCCCCcchhhhccCCcc
Confidence 4666776654 8999999999999998776
No 125
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.72 E-value=32 Score=27.71 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=29.4
Q ss_pred cccccccCCCC-------------CCCeEecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 545 GECCLLCHSSA-------------AGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 545 ~~~C~~C~~~~-------------~~~wi~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
.+.|.+|...- ++..+.-..|+-.||..|+..=+. . +-.||-|+..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~--------~---~~~CP~CR~~ 73 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK--------Q---NNRCPLCQQD 73 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT--------T---CCBCTTTCCB
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH--------h---CCCCCCcCCC
Confidence 34588886542 122333336999999999976531 1 1389999865
No 126
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.68 E-value=16 Score=31.66 Aligned_cols=31 Identities=39% Similarity=0.600 Sum_probs=22.5
Q ss_pred EecCCCCCccccCcccCCCCCcccCccccCCceeecCCcccc
Q 007176 560 VNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPQCSVT 601 (614)
Q Consensus 560 i~CD~C~~wyH~~C~~~~~~g~~kd~ak~eg~~Y~CP~Cs~~ 601 (614)
+.---|+-.||..|...=+ +. +..||-|+..
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl--------~~---~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWL--------KT---RQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHH--------TT---CSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHH--------Hc---CCcCcCCCCc
Confidence 3334799999999986643 11 3679999987
No 127
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=20.02 E-value=44 Score=23.52 Aligned_cols=15 Identities=33% Similarity=1.198 Sum_probs=11.9
Q ss_pred eeecCCcccccccCC
Q 007176 592 EYVCPQCSVTNFKKK 606 (614)
Q Consensus 592 ~Y~CP~Cs~~~~~k~ 606 (614)
+|.||+|...++.+.
T Consensus 5 DW~C~~C~~~Nfa~r 19 (32)
T 2lk0_A 5 DWLCNKCCLNNFRKR 19 (32)
T ss_dssp EEECTTTCCEEETTC
T ss_pred CCCcCcCcCCcChhc
Confidence 399999988877655
Done!